HHsearch alignment for GI: 254780922 and conserved domain: TIGR03584
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=98.30 E-value=7e-07 Score=63.36 Aligned_cols=202 Identities=15% Similarity=0.212 Sum_probs=106.6
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7992488874553344389822224783747999999999789-868999977765643111222222221111222333
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL 81 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~ 81 (292)
T Consensus 2 aiIPaR~gSkri~------~KN~~~~~g~pLi~~~i~~~~~s~~~d~i~-vST-D~~~i~-~---ia~~~~~~~~~~Rp~ 69 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDEVV-VST-DDEEIA-E---VAKSYGASVPFMRPA 69 (222)
T ss_pred EEECCCCCCCCCC------CCCHHHHCCCCHHHHHHHHHHHCCCCCEEE-ECC-CHHHHH-H---HHHCCCCCCEEECCH
T ss_conf 8984377887678------601256589285999999998579965388-727-889987-5---552169864251865
Q ss_pred CCC----CCCCCCCCCCCCCCC---CC-CCEEECCCCCC-CCCCCCHHHHHCCCHHHHHCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 322----446852101112335---67-52132144321-11100001110000011100122221-0001222122221
Q gi|254780922|r 82 VPA----GLAQSYILGAEFIGD---SS-SVLILGDNVFY-GSDISDIFHKARARRNSATVVGCHVQ-NPQRYGVVEVDSS 151 (292)
Q Consensus 82 ~p~----Gta~Ai~~a~~~i~~---~~-~~lilgDni~~-~~~l~~~l~~~~~~~~~~ti~~~~v~-~p~~yGvv~~d~~ 151 (292)
T Consensus 70 ~ls~d~~~~~~vi~~~l~~~~~~~~~d~i~~l~pTsP~r~~~~I~~ai~~~~~~~~ds~~sv~~~~~~~~~~--~~~~~~ 147 (222)
T TIGR03584 70 ELSDDFTGTAPVVAHAIERLQLQKQPDHACCIYATAPLLQAKILKEAFELLKQPNKHFVFTVTEFAFPIQRA--FSLKEN 147 (222)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH--EEECCC
T ss_conf 555886214599999999998658999899954897615899999999999726998550653377685893--798679
Q ss_pred CCHHHCCCCCCCC-----CCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCC
Q ss_conf 0001001333332-----2222-202455410002243220046753333333432000001320463135412563278
Q gi|254780922|r 152 NQAISIEEKPNNP-----KSSF-AVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAG 225 (292)
Q Consensus 152 ~~i~~i~EKP~~~-----~sn~-a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~G 225 (292)
T Consensus 148 ~~~~~~~~~~~~~r~Qdl~~~y~~~G~~y~~~~~~~~~~~~-----------------~~~~~-~~~~~~~~~-~siDID 208 (222)
T TIGR03584 148 GGVTMFFPEHYNTRSQDLEEAYHDAGQFYWGKSQAWLESGP-----------------IFSPH-SIPIILPRH-LVQDID 208 (222)
T ss_pred CCEEECCHHHHHHHHHHCCCCEEECCEEEEEEHHHHHHCCC-----------------CCCCC-EEEEEECCC-CCCCCC
T ss_conf 94633474552024442443375447899988999984497-----------------02898-799998998-628999
Q ss_pred CHHHHHHHHHHH
Q ss_conf 457799999999
Q gi|254780922|r 226 TPESLLDTAVFV 237 (292)
Q Consensus 226 t~e~l~~As~~i 237 (292)
T Consensus 209 ~~~D~~~Ae~l~ 220 (222)
T TIGR03584 209 TLEDWERAELLY 220 (222)
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999986