HHsearch alignment for GI: 254780922 and conserved domain: TIGR03584

>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=98.30  E-value=7e-07  Score=63.36  Aligned_cols=202  Identities=15%  Similarity=0.212  Sum_probs=106.6

Q ss_pred             EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7992488874553344389822224783747999999999789-868999977765643111222222221111222333
Q gi|254780922|r    3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL   81 (292)
Q Consensus         3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~   81 (292)
T Consensus         2 aiIPaR~gSkri~------~KN~~~~~g~pLi~~~i~~~~~s~~~d~i~-vST-D~~~i~-~---ia~~~~~~~~~~Rp~   69 (222)
T TIGR03584         2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDEVV-VST-DDEEIA-E---VAKSYGASVPFMRPA   69 (222)
T ss_pred             EEECCCCCCCCCC------CCCHHHHCCCCHHHHHHHHHHHCCCCCEEE-ECC-CHHHHH-H---HHHCCCCCCEEECCH
T ss_conf             8984377887678------601256589285999999998579965388-727-889987-5---552169864251865


Q ss_pred             CCC----CCCCCCCCCCCCCCC---CC-CCEEECCCCCC-CCCCCCHHHHHCCCHHHHHCCCCCCC-CCCCCCCCCCCCC
Q ss_conf             322----446852101112335---67-52132144321-11100001110000011100122221-0001222122221
Q gi|254780922|r   82 VPA----GLAQSYILGAEFIGD---SS-SVLILGDNVFY-GSDISDIFHKARARRNSATVVGCHVQ-NPQRYGVVEVDSS  151 (292)
Q Consensus        82 ~p~----Gta~Ai~~a~~~i~~---~~-~~lilgDni~~-~~~l~~~l~~~~~~~~~~ti~~~~v~-~p~~yGvv~~d~~  151 (292)
T Consensus        70 ~ls~d~~~~~~vi~~~l~~~~~~~~~d~i~~l~pTsP~r~~~~I~~ai~~~~~~~~ds~~sv~~~~~~~~~~--~~~~~~  147 (222)
T TIGR03584        70 ELSDDFTGTAPVVAHAIERLQLQKQPDHACCIYATAPLLQAKILKEAFELLKQPNKHFVFTVTEFAFPIQRA--FSLKEN  147 (222)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH--EEECCC
T ss_conf             555886214599999999998658999899954897615899999999999726998550653377685893--798679


Q ss_pred             CCHHHCCCCCCCC-----CCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCC
Q ss_conf             0001001333332-----2222-202455410002243220046753333333432000001320463135412563278
Q gi|254780922|r  152 NQAISIEEKPNNP-----KSSF-AVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAG  225 (292)
Q Consensus       152 ~~i~~i~EKP~~~-----~sn~-a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~G  225 (292)
T Consensus       148 ~~~~~~~~~~~~~r~Qdl~~~y~~~G~~y~~~~~~~~~~~~-----------------~~~~~-~~~~~~~~~-~siDID  208 (222)
T TIGR03584       148 GGVTMFFPEHYNTRSQDLEEAYHDAGQFYWGKSQAWLESGP-----------------IFSPH-SIPIILPRH-LVQDID  208 (222)
T ss_pred             CCEEECCHHHHHHHHHHCCCCEEECCEEEEEEHHHHHHCCC-----------------CCCCC-EEEEEECCC-CCCCCC
T ss_conf             94633474552024442443375447899988999984497-----------------02898-799998998-628999


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             457799999999
Q gi|254780922|r  226 TPESLLDTAVFV  237 (292)
Q Consensus       226 t~e~l~~As~~i  237 (292)
T Consensus       209 ~~~D~~~Ae~l~  220 (222)
T TIGR03584       209 TLEDWERAELLY  220 (222)
T ss_pred             CHHHHHHHHHHH
T ss_conf             999999999986