HHsearch alignment for GI: 254780922 and conserved domain: cd02513
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=98.51 E-value=1.4e-07 Score=67.70 Aligned_cols=200 Identities=15% Similarity=0.229 Sum_probs=105.4
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7992488874553344389822224783747999999999789-868999977765643111222222221111222333
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL 81 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~ 81 (292)
T Consensus 4 aiIpAR~gSkri~------~KN~~~i~gkpLi~~~i~~a~ks~~~d~Iiv-ST-Ds~~i~-~~---~~k~~~~~~~~Rpk 71 (223)
T cd02513 4 AIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVV-ST-DDEEIA-EV---ARKYGAEVPFLRPA 71 (223)
T ss_pred EEECCCCCCCCCC------CHHHHHHCCCCHHHHHHHHHHHCCCCCEEEE-EC-CHHHHH-HH---HCCCCCEEEECCCH
T ss_conf 9986787787899------7004463895969999999996699550789-55-878975-42---12456417973846
Q ss_pred CC----CCCCCCCCCCCCCCCC-----CCCCEEECCCCCCC-CCCCCHHHHHCCCHHHHHCCCCCCCC-CCCCCCCCCCC
Q ss_conf 32----2446852101112335-----67521321443211-11000011100000111001222210-00122212222
Q gi|254780922|r 82 VP----AGLAQSYILGAEFIGD-----SSSVLILGDNVFYG-SDISDIFHKARARRNSATVVGCHVQN-PQRYGVVEVDS 150 (292)
Q Consensus 82 ~p----~Gta~Ai~~a~~~i~~-----~~~~lilgDni~~~-~~l~~~l~~~~~~~~~~ti~~~~v~~-p~~yGvv~~d~ 150 (292)
T Consensus 72 ~ls~d~~~~~dvi~~~l~~~~~~~~~~d~iv~l~pTsP~r~~~~I~~~i~~~~~~k~dsl~sv~~~~~~~~~~~~--~~~ 149 (223)
T cd02513 72 ELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALG--LDD 149 (223)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHEE--ECC
T ss_conf 876886780677778998899868998999996279762789999999999985799999999854768188567--626
Q ss_pred CCCHHHCCCC-CCC------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEEC
Q ss_conf 1000100133-333------222222024554100022432200467533333334320000013204631354125632
Q gi|254780922|r 151 SNQAISIEEK-PNN------PKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFD 223 (292)
Q Consensus 151 ~~~i~~i~EK-P~~------~~sn~a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D 223 (292)
T Consensus 150 ~~-~~~~~~~~~~~~~rQ~~~~~y~~~g~~yi~~~~~~~k~~~-----------------~~~~k-~~~~~~~~-~~siD 209 (223)
T cd02513 150 NG-LEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNS-----------------FFGGK-TGPYEMPR-ERSID 209 (223)
T ss_pred CC-CCCCCCCHHHCCCCCCCCEEEEECCEEEEEEHHHHHHCCC-----------------CCCCC-EEEEEECC-CCEEC
T ss_conf 87-0213686110676446760478604899999999985498-----------------03897-79999488-71684
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 7845779999999
Q gi|254780922|r 224 AGTPESLLDTAVF 236 (292)
Q Consensus 224 ~Gt~e~l~~As~~ 236 (292)
T Consensus 210 ID~~~Dl~~Ae~l 222 (223)
T cd02513 210 IDTEEDFELAEAL 222 (223)
T ss_pred CCCHHHHHHHHHH
T ss_conf 8999999999986