HHsearch alignment for GI: 254780922 and conserved domain: cd02518
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=98.55 E-value=5.8e-07 Score=63.87 Aligned_cols=221 Identities=18% Similarity=0.189 Sum_probs=118.1
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7992488874553344389822224783747999999999789-8689999777656-4311122222222111122233
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDL-PVLKEFLGSGEKWGVQFSYIEQ 80 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~-~~~~~~l~~g~~~g~~i~y~~q 80 (292)
T Consensus 2 ~iI~aR~~S~RLp------~K~L~~i~~~~~i~~~i~r~k~~~~~~~IivaTs~~~~Dd~l~~~~---~~~~i~~--frG 70 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALA---KKLGVKV--FRG 70 (233)
T ss_pred EEEECCCCCCCCC------CCCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH---HHCCEEE--EEC
T ss_conf 8996077883789------8600230995799999999996689884999817865226999999---7484899--957
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 33224468521011123356752132144321111-00001110000011100122221000122212222100010013
Q gi|254780922|r 81 LVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD-ISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEE 159 (292)
Q Consensus 81 ~~p~Gta~Ai~~a~~~i~~~~~~lilgDni~~~~~-l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~~i~E 159 (292)
T Consensus 71 s~~dvl-~R~~~a~~~~~~d~ivri~gD~P~idp~~id~~i~~~~~~~~Dyvsn~~~~~~P~G~~~ei~s~~-~L~~~~~ 148 (233)
T cd02518 71 SEEDVL-GRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLPRTYPDGLDVEVFTRD-ALERAAA 148 (233)
T ss_pred CCCHHH-HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEHHH-HHHHHHH
T ss_conf 830588-99999987157888999768777589899999999985079998944789988881699988199-9999997
Q ss_pred CCCCCCCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 3333222222024554100-022432200467533333334320000013204631354125632784577999999999
Q gi|254780922|r 160 KPNNPKSSFAVTGIYFYDQ-EVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVR 238 (292)
Q Consensus 160 KP~~~~sn~a~~GiY~f~~-~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~e~l~~As~~i~ 238 (292)
T Consensus 149 ~~~~~-~~rEHvt~y~~~n~~~fki~-~~~~------------------~~---~~~-~~-~rltlD~~eD~~~~~~I~~ 203 (233)
T cd02518 149 EADDP-YEREHVTPYIRRHPELFRIG-YLEA------------------PP---DRL-SD-LRLTVDTPEDFELIKEIYE 203 (233)
T ss_pred HCCCC-CCCCCCHHHHHHCCHHCEEE-EECC------------------CC---CCC-CC-CEEEECCHHHHHHHHHHHH
T ss_conf 44784-42100039988492022488-7448------------------74---346-55-5698368999999999999
Q ss_pred HHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 9888809866209999988689898999998864258
Q gi|254780922|r 239 NIENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGN 275 (292)
Q Consensus 239 ~~e~~~g~~i~~~ee~a~~~~~i~~~~l~~~~~~~~~ 275 (292)
T Consensus 204 ~l~--------------~~~~~~s~~dIi~~l~knp~ 226 (233)
T cd02518 204 ALY--------------PKNPDFSLEDIIELLDKNPE 226 (233)
T ss_pred HHC--------------CCCCCCCHHHHHHHHHHCCC
T ss_conf 855--------------77899899999999997966