HHsearch alignment for GI: 254780922 and conserved domain: cd06442
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=92.75 E-value=0.12 Score=30.57 Aligned_cols=186 Identities=17% Similarity=0.152 Sum_probs=84.4
Q ss_pred EEEECCE-EHHHHHHHHHHHC--CCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2247837-4799999999978--986-89999777656431112222222211112223333224468521011123356
Q gi|254780922|r 25 MLPIYNK-PMIYYPVSTLMDA--GIR-EILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDS 100 (292)
Q Consensus 25 Llpi~gk-plI~~~l~~l~~~--Gi~-~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~p~Gta~Ai~~a~~~i~~~ 100 (292)
T Consensus 2 IIP~yNEe~~i~~~l~~i~~~~~~~~~eIIvVdD-gStD~T~~i~~~l~~~~~~~~~i~~~~n~G~g~Ai~~G~~~a~~~ 80 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDD-NSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAARGD 80 (224)
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9995487888999999999860689949999989-697371788865422477247863366787279999999860178
Q ss_pred CCCEEECCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCC--CCCCCCCCCCCCHHHCCCCCC--CCCCCCCHHHHHHH
Q ss_conf 75213214432111100001110000011100122221000--122212222100010013333--32222220245541
Q gi|254780922|r 101 SSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQ--RYGVVEVDSSNQAISIEEKPN--NPKSSFAVTGIYFY 176 (292)
Q Consensus 101 ~~~lilgDni~~~~~l~~~l~~~~~~~~~~ti~~~~v~~p~--~yGvv~~d~~~~i~~i~EKP~--~~~sn~a~~GiY~f 176 (292)
T Consensus 81 ~i~~~DaD~q~~p~~i~~li~~~~~~~~d~V~GsR~~~~~~~~~~~~~r~-~~s~~~~~i~~~l~~~~i~D-~~~gfr~~ 158 (224)
T cd06442 81 VIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRK-LISRGANLLARLLLGRKVSD-PTSGFRAY 158 (224)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHH-HHHHHHHHHHHHCCCCEECC-CCCCEEEE
T ss_conf 46886599976277789999998718872479887627986357706667-88888887632305842431-79963998
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEE
Q ss_conf 00022432200467533333334320000013204631
Q gi|254780922|r 177 DQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEF 214 (292)
Q Consensus 177 ~~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~ 214 (292)
T Consensus 159 ~~~~~~~i~~~~~~~~f~~~-~ei~~~~~~~~~ki~ev 195 (224)
T cd06442 159 RREVLEKLIDSLVSKGYKFQ-LELLVRARRLGYRIVEV 195 (224)
T ss_pred EHHHHHHHHHHCCCCCCCCH-HHHHHHHHHCCCEEEEE
T ss_conf 89999988775456663018-99999999889989999