PSIBLAST alignment of GI: 254780922 and protein with PDB id: 1mc3

>gi|27065634|pdb|1MC3|A Chain A, Crystal Structure Of Rffh Length = 296
>gi|27065635|pdb|1MC3|B Chain B, Crystal Structure Of Rffh Length = 296
 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 143/290 (49%), Positives = 195/290 (67%)

Query: 2   KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61
           KGI+LAGGSGTRL P+T  +SKQ+LPIY+KP IYYP+S L  AGIREILII+TP D    
Sbjct: 5   KGIILAGGSGTRLHPITRGVSKQLLPIYDKPXIYYPLSVLXLAGIREILIITTPEDKGYF 64

Query: 62  KEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFH 121
           +  LG G ++G+Q  Y EQ  P GLAQ++I+G  F+    S L+LGDN+F+G   S    
Sbjct: 65  QRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKLR 124

Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181
              AR   ATV G  V +P+R+GVVE D + +AIS+EEKP  PKS++AVTG+YFYD +VV
Sbjct: 125 HVAARTEGATVFGYQVXDPERFGVVEFDDNFRAISLEEKPKQPKSNWAVTGLYFYDSKVV 184

Query: 182 NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNIE 241
             A+ ++PS RGELEIT +N  YL+ G L VE L  G AW D GT +SL++ + FV+ +E
Sbjct: 185 EYAKQVKPSERGELEITSINQXYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQTVE 244

Query: 242 NRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKR 291
            R G  +AC EEIA+R+ ++++    +       + YG YL +++  + R
Sbjct: 245 KRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKTGYGQYLLELLRARPR 294