RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780922|ref|YP_003065335.1| glucose-1-phosphate
thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(292 letters)
>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of
glucose-1-phosphate thymidylyltransferase. This family
is the short form of glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.There are two forms of Glucose-1-phosphate
thymidylyltransferase in bacteria and archeae; short
form and long form. The homotetrameric, feedback
inhibited short form is found in numerous bacterial
species that produce dTDP-L-rhamnose. The long form,
which has an extra 50 amino acids c-terminal, is found
in many species for which it serves as a
sugar-activating enzyme for antibiotic biosynthesis and
or other, unknown pathways, and in which dTDP-L-rhamnose
is not necessarily produced.
Length = 240
Score = 394 bits (1014), Expect = e-110
Identities = 148/240 (61%), Positives = 185/240 (77%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
MKGI+LAGGSGTRL PLT ++SKQ+LP+Y+KPMIYYP+STLM AGIREILIISTP DLP+
Sbjct: 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPL 60
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
KE LG G G++ +Y Q P GLAQ++I+G EFIGD LILGDN+FYG +S I
Sbjct: 61 FKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPIL 120
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
+A A++ ATV G V +P+RYGVVE D + + +SIEEKP PKS++AVTG+YFYD +V
Sbjct: 121 QRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSIEEKPKKPKSNYAVTGLYFYDNDV 180
Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
IA+ ++PSARGELEITDVN+ YL+KG L+VE L G AW D GT ESLL+ + FV+ I
Sbjct: 181 FEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQTI 240
>gnl|CDD|31402 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 286
Score = 346 bits (890), Expect = 3e-96
Identities = 140/289 (48%), Positives = 183/289 (63%), Gaps = 3/289 (1%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
MKG++LAGGSGTRLRPLT ++ KQ+LP+Y+KPMIYYP+ TLM AGIR+ILI+ P D P
Sbjct: 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
KE LG G +GV +Y Q P GLA + ++ +F+GD VL LGDN+F +S++
Sbjct: 61 FKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQD-GLSELL 119
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
+ AT++ V +P RYGVVE D + I +EEKP PKS+ AVTG+YFYD V
Sbjct: 120 EHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEPKSNLAVTGLYFYDPSV 179
Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
+ I+PSARGELEITD Y++KG L V L G W D GTPESLL+ FVR +
Sbjct: 180 FEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRG-WWLDTGTPESLLEANNFVRTV 238
Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKK 289
R G +ACPEEIA+ +I+ L S YG YL +++ +
Sbjct: 239 SKRQGFKIACPEEIAWN-GWIDGPGLIGLASQLEKSGYGQYLLELLRAR 286
>gnl|CDD|144176 pfam00483, NTP_transferase, Nucleotidyl transferase. This family
includes a wide range of enzymes which transfer
nucleotides onto phosphosugars.
Length = 247
Score = 254 bits (651), Expect = 2e-68
Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 8/247 (3%)
Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLPV 60
K I+LAGGSGTRL PLT L+K ++P+ +K PMI Y +S LM+AGIRE ++I T +
Sbjct: 1 KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS--VLILGDNVFYGSDISD 118
+ E LG G K+G+Q +Y Q P G A + L A+F+GD VL+LG + Y D +
Sbjct: 61 VAEQLGDGSKFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDFEE 120
Query: 119 I--FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPK-SSFAVTGIYF 175
+A+A + T V++P YGV+E D + + I EKP+ PK S++A GIYF
Sbjct: 121 AVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVEKPDLPKASNYASMGIYF 180
Query: 176 YDQEVV-NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSA-WFDAGTPESLLDT 233
++ V +A+ ++ ARGE EITD L+ G L + FL G A W D GT +SL +
Sbjct: 181 FNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEA 240
Query: 234 AVFVRNI 240
+ +
Sbjct: 241 NLKLLTG 247
>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of
glucose-1-phosphate thymidylyltransferase. This family
is the long form of Glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.There are two forms of Glucose-1-phosphate
thymidylyltransferase in bacteria and archeae; short
form and long form. The long form, which has an extra
50 amino acids c-terminal, is found in many species for
which it serves as a sugar-activating enzyme for
antibiotic biosynthesis and or other, unknown pathways,
and in which dTDP-L-rhamnose is not necessarily
produced.The long from enzymes also have a left-handed
parallel helix domain at the c-terminus, whereas, th
eshort form enzymes do not have this domain. The
homotetrameric, feedback inhibited short form is found
in numerous bacterial species that produce
dTDP-L-rhamnose.
Length = 236
Score = 225 bits (575), Expect = 2e-59
Identities = 88/233 (37%), Positives = 136/233 (58%), Gaps = 6/233 (2%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLP 59
MKG++LAGG GTRLRPLT KQ++P+ KP+I Y + L +AGI +I +++ +
Sbjct: 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEE- 59
Query: 60 VLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDI 119
+KE LG G ++GV+ +YI Q P GLA + + +F+GD V+ LGDN+ IS +
Sbjct: 60 -IKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQE-GISPL 117
Query: 120 FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQE 179
A+++ V++P+R+GV VD + + + EKP P S+ A+ G+Y +
Sbjct: 118 VRDFLEEDADASILLAEVEDPRRFGVAVVD-DGRIVRLVEKPKEPPSNLALVGVYAFTPA 176
Query: 180 VVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLD 232
+ + ++PS RGELEITD + +D+G + G W D GTPE LL+
Sbjct: 177 IFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTG-WWKDTGTPEDLLE 228
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of
nucleotides onto phosphosugars. Nucleotidyltransferases
transfer nucleotides onto phosphosugars. The enzyme
family includes Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase, Mannose-1-phosphate
guanyltransferase, and Glucose-1-phosphate
thymidylyltransferase. The products are activated sugars
that are precursors for synthesis of lipopolysaccharide,
glycolipids and polysaccharides.
Length = 217
Score = 193 bits (493), Expect = 5e-50
Identities = 77/223 (34%), Positives = 119/223 (53%), Gaps = 6/223 (2%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
++LA G GTRLRPLTD K +LPI KP++ Y + L AGI EI+++ ++
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLG-EQIE 59
Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHK 122
E+ G G K+GV Y+ Q P G A + +F+GD +++ GD + D+S++
Sbjct: 60 EYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTD-LDLSELLRF 118
Query: 123 ARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVN 182
R + AT+ V++P RYGVVE+D + EKP P+S+ A GIY ++ E+++
Sbjct: 119 HREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEKPTLPESNLANAGIYIFEPEILD 178
Query: 183 IARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAG 225
I P RGE E+TD +++G + W D G
Sbjct: 179 YIPEILP--RGEDELTDAIPLLIEEGKVYG--YPVDGYWLDIG 217
>gnl|CDD|31401 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 140 bits (355), Expect = 3e-34
Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 10/235 (4%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
MK ++LAGG GTRLRPLTD K +LPI KP+I Y + L AG+ EI+++
Sbjct: 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLG-EQ 60
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
++E+ G GE GV+ +Y+ + P G A + + +G +++ GD + D+S++
Sbjct: 61 IEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLT-DLDLSELL 119
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAI-SIEEKP--NNPKSSFAVTGIYFYD 177
+ + AT+ V +P +GVVE D + + EKP P S+ GIY +D
Sbjct: 120 EFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFD 179
Query: 178 QEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLD 232
EV + E ++ KG ++ EG W D GTPE LL+
Sbjct: 180 PEVFDYIEKGERFDFEE----ELLPALAAKGEDVYGYVFEGY-WLDIGTPEDLLE 229
>gnl|CDD|31403 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 291
Score = 110 bits (277), Expect = 5e-25
Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 38/269 (14%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDL-- 58
K ++ A G GTR P T + K+MLPI +KP+I Y V + AGI EILI++
Sbjct: 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAI 64
Query: 59 -------PVLKEFLGSGEKW-----------GVQFSYIEQLVPAGLAQSYILGAEFIGDS 100
L+ L K V S++ Q P GL + + F+GD
Sbjct: 65 EDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDE 124
Query: 101 SSVLILGDNVFYGS-----DISDIFHKARARRNSATVVGCHVQNPQRYGVVEV-----DS 150
++L D++ + +++ + V ++ +YGV++
Sbjct: 125 PFAVLLPDDLVDSEKPCLKQMIELY--EETGGSVIGVEEVPPEDVSKYGVIDPGEPVEKG 182
Query: 151 SNQAISIEEKP--NNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITD-VNSYYLDK 207
+ + EKP S+ A+ G Y E+ +I +P A GE+++TD + +
Sbjct: 183 VYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLKKE 242
Query: 208 GLLAVEFLREGSAWFDAGTPESLLDTAVF 236
+LA F EG +D G+ + V
Sbjct: 243 PVLAYVF--EGKR-YDCGSKLGYIKANVE 268
>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 220
Score = 109 bits (275), Expect = 9e-25
Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 20/231 (8%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
+++AGG GTRLRPLT+ K ML + KP++ + + G R IS ++++
Sbjct: 2 VIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNF-YISVNYLAEMIED 60
Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKA 123
+ G G K+GV SY+ + P G A + L E D L++ ++ + +
Sbjct: 61 YFGDGSKFGVNISYVREDKPLGTAGALSLLPEKPTD--PFLVMNGDILTNLNYEHLLDFH 118
Query: 124 RARRNSATVVGC--HVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181
+ ATV VQ P YGVVE + SIEEKP + S GIY + EV+
Sbjct: 119 KENNADATVCVREYEVQVP--YGVVETEGGR-ITSIEEKPTH--SFLVNAGIYVLEPEVL 173
Query: 182 N-IARNIRPSARGELEITDVNSYYLDKGLLAVEF-LREGSAWFDAGTPESL 230
+ I +N ++ D+ + +G F + E W D G PE
Sbjct: 174 DLIPKNEF------FDMPDLIEKLIKEGKKVGVFPIHE--YWLDIGRPEDY 216
>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the
synthesis of UDP-glucose. Prokaryotic UDP-Glucose
Pyrophosphorylase (UGPase) catalyzes a reversible
production of UDP-Glucose and pyrophosphate (PPi) from
glucose-1-phosphate and UTP. UDP-glucose plays pivotal
roles in galactose utilization, in glycogen synthesis,
and in the synthesis of the carbohydrate moieties of
glycolipids , glycoproteins , and proteoglycans. UGPase
is found in both prokaryotes and eukaryotes, although
prokaryotic and eukaryotic forms of UGPase catalyze the
same reaction, they share low sequence similarity.
Length = 267
Score = 108 bits (272), Expect = 2e-24
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 43/266 (16%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPR---- 56
K ++ A G GTR P T + K+MLPI +KP+I Y V + AGI +I+I++
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAI 60
Query: 57 -----DLPVLKEFLGSGEKW-----------GVQFSYIEQLVPAGLAQSYILGAEFIGDS 100
L+E L K Y+ Q P GL + + FIGD
Sbjct: 61 EDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDE 120
Query: 101 SSVLILGDNVFYG-----SDISDIFHKARARRNSATVVGCHVQNP---QRYGVVEVDSSN 152
++LGD++ + + + K A+V+ P +YG+V+ + +
Sbjct: 121 PFAVLLGDDLIDSKEPCLKQLIEAYEKTG-----ASVIAVEEVPPEDVSKYGIVKGEKID 175
Query: 153 QAI----SIEEKPN--NPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITD-VNSYYL 205
+ + EKP S+ A+ G Y ++ +I N +P GE+++TD +
Sbjct: 176 GDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLE 235
Query: 206 DKGLLAVEFLREGSAWFDAGTPESLL 231
++ + A F EG +D G L
Sbjct: 236 EEPVYAYVF--EGK-RYDCGNKLGYL 258
>gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose
pyrophosphorylase/mannose-1-phosphate
guanylyltransferase [Cell wall/membrane/envelope
biogenesis].
Length = 371
Score = 104 bits (261), Expect = 3e-23
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 27/248 (10%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+K I+L GG GTRLRPLT K ++P NKPMI + + L+++GI +I++ + +
Sbjct: 10 VKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESL 69
Query: 61 LKEFLGS-GEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS--VLILGDNVFYGSDIS 117
+ + G++ GV+ + P G A L +F+ +L +V
Sbjct: 70 NRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYK 129
Query: 118 DIFHKARARRNSATVVGCHVQNPQRYGVVEVD-SSNQAISIEEKPNNPKSSFAVTGIYFY 176
++ RA T+V V P +YGVV +D + + I EKP + S+ GIY
Sbjct: 130 EMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYIL 189
Query: 177 DQEVV--------NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPE 228
+ EV+ +I + I P+ E + + ++ L W D G P+
Sbjct: 190 NPEVLDRILLRPTSIEKEIFPAMAEEHQ---LYAFDLP------------GFWMDIGQPK 234
Query: 229 SLLDTAVF 236
L F
Sbjct: 235 DFLTGFSF 242
>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the
M1P-guanylyltransferase B-isoform like proteins.
GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain and a C-terminal Lefthanded-beta-Helix
fold domain. GDP-d-mannose is the activated form of
mannose for formation of cell wall lipoarabinomannan and
various mannose-containing glycolipids and
polysaccharides. The function of GDP-mannose
pyrophosphorylase is essential for cell wall integrity,
morphogenesis and viability. Repression of GDP-mannose
pyrophosphorylase in yeast leads to phenotypes, such as
cell lysis, defective cell wall, and failure of
polarized growth and cell separation.
Length = 233
Score = 95.7 bits (239), Expect = 1e-20
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 36/232 (15%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIRE-ILIIS-TPRDL 58
MK ++L GG GTRLRPLT + K ++ NKPMI + + L AG++E IL ++ P D+
Sbjct: 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60
Query: 59 -PVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFY--GSD 115
P LKE+ +K G++ ++ + P G A L + +GD D F+ SD
Sbjct: 61 VPFLKEY---EKKLGIKITFSIETEPLGTAGPLALARDLLGD-------DDEPFFVLNSD 110
Query: 116 -ISDI-------FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAI-SIEEKPNNPKS 166
I D FHK T++ V++P +YGVV D + I EKP
Sbjct: 111 VICDFPLAELLDFHKKHGAE--GTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVG 168
Query: 167 SFAVTGIYFYDQEVVN--------IARNIRP--SARGELEITDVNSYYLDKG 208
+ GIY + V++ I + I P ++ G+L ++ +++D G
Sbjct: 169 NKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIG 220
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
nucleotidyl transferases. WcbM protein of Burkholderia
mallei is involved in the biosynthesis, export or
translocation of capsule. It is a subfamily of
nucleotidyl transferases that transfer nucleotides onto
phosphosugars.
Length = 223
Score = 85.7 bits (213), Expect = 1e-17
Identities = 59/228 (25%), Positives = 98/228 (42%), Gaps = 11/228 (4%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
++LAGG GTRLR + L K + P+ +P + Y + L GI I ++S ++E
Sbjct: 2 VILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRI-VLSVGYLAEQIEE 60
Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKA 123
+ G G + G++ Y+ + P G + + + +++ GD ++ D+ +
Sbjct: 61 YFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQFLVLNGDT-YFDVDLLALLAAL 119
Query: 124 RARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVNI 183
RA AT+ V + RYG V VD + I+ EK G+Y +E++
Sbjct: 120 RASGADATMALRRVPDASRYGNVTVDGDGRVIAFVEKGPGAAPGLINGGVYLLRKEILAE 179
Query: 184 ARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWF-DAGTPESL 230
S LE DV + +G L E +F D G PE
Sbjct: 180 IPADAFS----LE-ADVLPALVKRGRLYG---FEVDGYFIDIGIPEDY 219
>gnl|CDD|30797 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 393
Score = 84.5 bits (209), Expect = 3e-17
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 20/197 (10%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLPVL 61
I+LAGG G+RL PLT +K +P K +I + +S +++GIR I +++ + L
Sbjct: 8 AIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSH-SL 66
Query: 62 KEFLGSGEKWGVQF--SYIEQLVP---AGLAQSYILGAEFI---------GDSSSVLILG 107
+ +G G W + + L G + Y A+ I D VLIL
Sbjct: 67 NDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILS 126
Query: 108 DNVFYGSDISDIFHKARARRNSATVVGCHV--QNPQRYGVVEVDSSNQAISIEEKPNN-- 163
+ Y D SD+ TV V + R+GV+ VD + + I EKP +
Sbjct: 127 GDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEKPADGP 186
Query: 164 PKSSFAVTGIYFYDQEV 180
P +S A GIY ++ ++
Sbjct: 187 PSNSLASMGIYIFNTDL 203
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit
of the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of gamma subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
gamma shares sequence similarity with epsilon subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 214
Score = 72.3 bits (178), Expect = 1e-13
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRD 57
+ ++LAGG G+RL PLTD + K +LP+ NKPMI+YP+ L AG +++++ +
Sbjct: 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEE 57
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 221
Score = 71.4 bits (176), Expect = 2e-13
Identities = 58/242 (23%), Positives = 93/242 (38%), Gaps = 31/242 (12%)
Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILI-ISTPRDLPV 60
K ++LA G GTR+RPLTD K ++P+ KP+I + + L AGIR I++ D
Sbjct: 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQ-- 58
Query: 61 LKEFLGSGEKWG--VQFSYIEQLVPA----GLAQSYILGAEFIGDSSSVLILGDNV-FYG 113
++ LG ++G + S E G+ + +GD +++ GD +
Sbjct: 59 IEAHLGD-SRFGLRITISD-EPDELLETGGGIKK----ALPLLGDEPFLVVNGDILWDGD 112
Query: 114 SDISDIFHKARARRNSATVVG--CHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVT 171
+ H R + N G +D+ + + + F T
Sbjct: 113 LAPLLLLHAWRMDALLLLLPLVRNPGHNG--VGDFSLDADGR---LRRGGGGAVAPFTFT 167
Query: 172 GIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLL 231
GI E+ I P G+ + + + G L WFD GTPE LL
Sbjct: 168 GIQILSPELF---AGIPP---GKFSLNPLWDRAIAAGRLFGLVYD--GLWFDVGTPERLL 219
Query: 232 DT 233
Sbjct: 220 AA 221
>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like
is predicted to have glycosyltransferase activity.
N-terminal domain of eEIF-2B epsilon and gamma, subunits
of eukaryotic translation initiators, is a subfamily of
glycosyltranferase 2 and is predicted to have
glycosyltranferase activity. eIF-2B is a guanine
nucleotide-exchange factor which mediates the exchange
of GDP (bound to initiation factor eIF2) for GTP,
generating active eIF2.GTP complex. EIF2B is a complex
multimeric protein consisting of five subunits named
alpha, beta, gamma, delta and epsilon. Subunit epsilon
shares sequence similarity with gamma subunit, and with
a family of bifunctional nucleotide-binding enzymes such
as ADP-glucose pyrophosphorylase, suggesting that
epsilon subunit may play roles in nucleotide binding
activity. In yeast, eIF2B gamma enhances the activity of
eIF2B-epsilon leading to the idea that these subunits
form the catalytic subcomplex.
Length = 216
Score = 65.7 bits (161), Expect = 2e-11
Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 23/188 (12%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+ +VLA G G+R PLT + K +LP+ N P+I Y + L AG+ E+ ++ +
Sbjct: 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS------VLILGDNVFYGS 114
++ L S KW S + V A + D +L+ D +
Sbjct: 61 IEHLLKS--KWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIRSDFLLLSCD-LVSNI 117
Query: 115 DISDIFHKARA--RRNSATVVGCHVQNPQR---------YGVVEVDSSNQA---ISIEEK 160
+S++ + R + AT+ P V+ VDS Q + EE
Sbjct: 118 PLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEED 177
Query: 161 PNNPKSSF 168
+
Sbjct: 178 LDEDLELI 185
>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU. The
N-terminal domain of N-Acetylglucosamine-1-phosphate
uridyltransferase (GlmU). GlmU is an essential bacterial
enzyme with both an acetyltransferase and an
uridyltransferase activity which have been mapped to the
C-terminal and N-terminal domains, respectively. This
family represents the N-terminal uridyltransferase. GlmU
performs the last two steps in the synthesis of
UDP-N-acetylglucosamine (UDP-GlcNAc), which is an
essential precursor in both the peptidoglycan and the
lipopolysaccharide metabolic pathways in Gram-positive
and Gram-negative bacteria, respectively.
Length = 229
Score = 63.7 bits (156), Expect = 6e-11
Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 30/221 (13%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLPVLK 62
++LA G GTR++ +DL K + P+ KPM+ + + G I +++ + V K
Sbjct: 2 VILAAGKGTRMK--SDL-PKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQ-VKK 57
Query: 63 EFLGSGEKWGVQFSYIEQLVPAG-LAQSYILGAEFIGDSSSVLILGDNVFYG-------S 114
++ +Q EQL + Q+ +F GD VL+L YG
Sbjct: 58 ALANPNVEFVLQ---EEQLGTGHAVKQALPALKDFEGD---VLVL-----YGDVPLITPE 106
Query: 115 DISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNP---KSSFAV 170
+ + R TV+ +++P YG + D + + + I EEK
Sbjct: 107 TLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEEEKAIREVN 166
Query: 171 TGIYFYDQEVVNIA-RNIRPS-ARGELEITDVNSYYLDKGL 209
GIY +D E + A + + A+GE +TD+ + + GL
Sbjct: 167 AGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGL 207
>gnl|CDD|36673 KOG1460, KOG1460, KOG1460, GDP-mannose pyrophosphorylase
[Carbohydrate transport and metabolism, Cell
wall/membrane/envelope biogenesis, Posttranslational
modification, protein turnover, chaperones].
Length = 407
Score = 63.0 bits (153), Expect = 9e-11
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 10/196 (5%)
Query: 1 MKGIVLAGG--SGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMD-AGIREILIISTPRD 57
+K ++L GG GTR RPL+ + K + PI PMI++ +S +G+ EIL++ +
Sbjct: 3 VKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEE 62
Query: 58 LPVLKEFLGS-GEKWGVQFSYIEQLVPAGLAQSYILGAEFI--GDSSSVLILGDNVFYGS 114
V +F+ + +++ V Y+ + P G A + I G S+V +L +V
Sbjct: 63 -RVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSF 121
Query: 115 DISDIFHKARARRNSATVVGCHVQNPQ--RYG-VVEVDSSNQAISIEEKPNNPKSSFAVT 171
+ D+ R T++ V Q +G +VE S+ + + EKP+ S
Sbjct: 122 PLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINC 181
Query: 172 GIYFYDQEVVNIARNI 187
G+Y + E+ N +
Sbjct: 182 GVYLFTPEIFNAIAEV 197
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
cytidylyltransferases catalyze the synthesis of
CDP-choline. This family contains proteins similar to
prokaryotic phosphocholine (P-cho)
cytidylyltransferases. Phosphocholine (PC)
cytidylyltransferases catalyze the transfer of a
cytidine monophosphate from CTP to phosphocholine to
form CDP-choline. PC is the most abundant phospholipid
in eukaryotic membranes and it is also important in
prokaryotic membranes. For pathogenic prokaryotes, the
cell surface PC facilitates the interaction with host
surface and induces attachment and invasion. In addition
cell wall PC serves as scaffold for a group of
choline-binding proteins that are secreted from the
cells. Phosphocholine (PC) cytidylyltransferase is a key
enzyme in the prokaryotic choline metabolism pathway. It
has been hypothesized to consist of a choline transport
system, a choline kinase, CTP:phosphocholine
cytidylyltransferase, and a choline phosphotransferase
that transfers P-Cho from CDP-Cho to either lipoteichoic
acid or lipopolysaccharide.
Length = 229
Score = 62.2 bits (152), Expect = 2e-10
Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 19/235 (8%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
I+LA G G+RLRPLT+ K +L I KP++ + TL +AGI +I+I++ + ++E
Sbjct: 2 IILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKK-EQIEE 60
Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSDISDIFHK 122
L ++F Y S L +F+ + L+L GD VF I +
Sbjct: 61 LLKKYPN--IKFVYNPDYAETNNIYSLYLARDFLDE--DFLLLEGDVVFD----PSILER 112
Query: 123 ARA--RRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVT-GIYFYD-- 177
+ N+ V + Y D+ I K N + GI +
Sbjct: 113 LLSSPADNAILVDKKTKEWEDEYVKDLDDAGVLLGII-SKAKNLEEIQGEYVGISKFSPE 171
Query: 178 --QEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESL 230
+ + + R L D + + + V+ + W++ E L
Sbjct: 172 DADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDI-SDGFWYEIDDLEDL 225
>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of
M1P_guanylyl_A_ like proteins are likely to be a isoform
of GDP-mannose pyrophosphorylase. N-terminal domain of
the M1P-guanylyltransferase A-isoform like proteins:
The proteins of this family are likely to be a isoform
of GDP-mannose pyrophosphorylase. Their sequences are
highly conserved with mannose-1-phosphate
guanyltransferase, but generally about 40-60 bases
longer. GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain that resembles a dinucleotide-binding
Rossmann fold and a C-terminal LbH fold domain.
GDP-d-mannose is the activated form of mannose for
formation of cell wall lipoarabinomannan and various
mannose-containing glycolipids and polysaccharides. The
function of GDP-mannose pyrophosphorylase is essential
for cell wall integrity, morphogenesis and viability.
Repression of GDP-mannose pyrophosphorylase in yeast
leads to phenotypes including cell lysis, defective cell
wall, and failure of polarized growth and cell
separation.
Length = 257
Score = 60.3 bits (147), Expect = 5e-10
Identities = 52/224 (23%), Positives = 101/224 (45%), Gaps = 18/224 (8%)
Query: 3 GIVLAGG--SGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMD-AGIREILIISTPRDLP 59
++L GG GTR RPL+ + K + P+ KPMI++ + ++E+L+I +
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPES- 59
Query: 60 VLKEFLGSG-EKWGVQFSYIEQLVPAGLA------QSYILGAEFIGDSSSVLILGDNVFY 112
V +F+ +++ V Y+++ P G A + IL G+ S+ +L +V
Sbjct: 60 VFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILA----GNPSAFFVLNADVCC 115
Query: 113 GSDISDIFHKARARRNSATVVGCHVQNPQ--RYG-VVEVDSSNQAISIEEKPNNPKSSFA 169
+ ++ + S T++G Q YG +VE S+ + + EKP S
Sbjct: 116 DFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLI 175
Query: 170 VTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVE 213
G+Y + E+ + + S + E ++ D N+ ++ +E
Sbjct: 176 NCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLE 219
>gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B,
gamma subunit (eIF-2Bgamma/GCD1) [Translation,
ribosomal structure and biogenesis].
Length = 433
Score = 58.4 bits (141), Expect = 2e-09
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+ +VLAGG GTR+ +T L K +LPI NKPMI YP+++L AG EI+++ +
Sbjct: 10 FQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLD 69
Query: 61 LKEFLGSGEKWGVQFSYIE 79
++ LGS + Y+E
Sbjct: 70 IESALGSNIDLKKRPDYVE 88
>gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 57.9 bits (140), Expect = 3e-09
Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 26/223 (11%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLP 59
+ ++LA G GTR++ +DL K + P+ KPM+ + + G +I +++ +
Sbjct: 3 LSAVILAAGKGTRMK--SDL-PKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQ- 58
Query: 60 VLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYG------ 113
V + E+ V+F + Q G + + + D +L V YG
Sbjct: 59 VREAL---AERDDVEF--VLQEEQLGTGHAVLQALPALADDYDGDVL---VLYGDVPLIT 110
Query: 114 -SDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNP---KSSF 168
+ ++ A +ATV+ + +P YG + D + + +I EEK + +
Sbjct: 111 AETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKE 170
Query: 169 AVTGIYFYDQEVVNIA-RNIRPS-ARGELEITDVNSYYLDKGL 209
TGIY +D + A + + A+GE +TDV + ++G
Sbjct: 171 INTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGE 213
>gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved
in the biosynthesis of glycogen or starch. ADP-glucose
pyrophosphorylase (glucose-1-phosphate
adenylyltransferase) catalyzes a very important step in
the biosynthesis of alpha 1,4-glucans (glycogen or
starch) in bacteria and plants: synthesis of the
activated glucosyl donor, ADP-glucose, from
glucose-1-phosphate and ATP. ADP-glucose
pyrophosphorylase is a tetrameric allosterically
regulated enzyme. While a homotetramer in bacteria, in
plant chloroplasts and amyloplasts, it is a
heterotetramer of two different, yet evolutionary
related, subunits. There are a number of conserved
regions in the sequence of bacterial and plant
ADP-glucose pyrophosphorylase subunits. It is a
subfamily of a very diverse glycosy transferase family
2.
Length = 200
Score = 57.6 bits (140), Expect = 4e-09
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPI---YNKPMIYYPVSTLMDAGIREILIISTPRDLP 59
I+LAGG GTRL PLT +K +P Y +I +P+S ++++GIR + ++ T
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYR--LIDFPLSNMVNSGIRNVGVL-TQYKSR 57
Query: 60 VLKEFLGSGEKW-------GVQFSYIEQLVP----AGLAQSYILGAEFIGDSSS--VLIL 106
L + LGSG++W G+ +Q G A + ++I S VLIL
Sbjct: 58 SLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLIL 117
Query: 107 GDNVFYGSDISDIFHKARARRNSATVV 133
+ Y D ++ TVV
Sbjct: 118 SGDHIYNMDYREMLDFHIESGADITVV 144
>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase
catalyzes the production of CDP-D-Glucose.
Alpha-D-Glucose-1-phosphate Cytidylyltransferase
catalyzes the production of CDP-D-Glucose from
alpha-D-Glucose-1-phosphate and MgCTP as substrate.
CDP-D-Glucose is the precursor for synthesizing four of
the five naturally occurring 3,6-dideoxy sugars-abequose
(3,6-dideoxy-D-Xylo-hexose), ascarylose
(3,6-dideoxy-L-arabino-hexose), paratose
(3,6-dideoxy-D-ribohexose), and tyvelose
(3,6-dideoxy-D-arabino-hexose. Deoxysugars are
ubiquitous in nature where they function in a variety of
biological processes, including cell adhesion, immune
response, determination of ABO blood groups,
fertilization, antibiotic function, and microbial
pathogenicity.
Length = 253
Score = 56.4 bits (137), Expect = 8e-09
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 56/195 (28%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDA----GIRE-ILIISTPRDL 58
++LAGG GTRL T+L K M+ I +P++++ +M G + IL +
Sbjct: 2 VILAGGLGTRLSEETELKPKPMVEIGGRPILWH----IMKIYSHYGHNDFILCLGYKGH- 56
Query: 59 PVLKEF--------------LGSGEKWGVQF--SYIEQ----LVPAGLAQSYILG----- 93
V+KE+ LG+ ++ S IE LV GL + G
Sbjct: 57 -VIKEYFLNYFLHNSDVTIDLGTNR---IELHNSDIEDWKVTLVDTGLN-TMTGGRLKRV 111
Query: 94 AEFIGDSSSVLILGDNVFYGSDISDI-------FHKARARRNSATVVGCHVQNPQRYGVV 146
++GD + ++ YG +SD+ FH++ + ATV V P R+G +
Sbjct: 112 RRYLGDDETFMLT-----YGDGVSDVNINALIEFHRSHGK--LATVTA--VHPPGRFGEL 162
Query: 147 EVDSSNQAISIEEKP 161
++D Q S EKP
Sbjct: 163 DLDDDGQVTSFTEKP 177
>gnl|CDD|34365 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in
choline phosphorylation for cell surface LPS epitopes
[Cell envelope biogenesis, outer membrane].
Length = 231
Score = 54.9 bits (132), Expect = 3e-08
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 20/164 (12%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
M I+LA G G+R PLT K +L + +P+I + L +AGI +I I+
Sbjct: 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVG-----Y 55
Query: 61 LKE-FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDI 119
LKE F +K+ V Y + S L +F+ + + +I DN +I
Sbjct: 56 LKEQFEYLKDKYDVTLVYNPKYREYNNIYSLYLARDFLNN--TYIIDSDNYLT----KNI 109
Query: 120 FHKARARRNSATVV--GCHVQNPQRYGV------VEVDSSNQAI 155
F + V G + Y V++ N I
Sbjct: 110 FLTKESHSKYFAVYRSGKTNEWLLIYNSDGKITRVDIGGLNGYI 153
>gnl|CDD|31406 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 54.5 bits (131), Expect = 3e-08
Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 36/242 (14%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
MK ++LA G G+RL P + K ++ + + +IY + L AGI E ++++ +
Sbjct: 4 MKAVILAAGFGSRLGPD---IPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADL 60
Query: 61 LKEFLGSGEKWGVQFSYIEQLVP------AGLAQSYILGAEFIGDSSSVLILGDNVFYGS 114
++EFL ++ + ++V S +L +++ +++ + Y
Sbjct: 61 VEEFLK-------KYPFNAKIVINSDYEKTNTGYSLLLAKDYMDG--RFILVMSDHVYEP 111
Query: 115 DISDIFHKARARRNSATVVGCHVQNPQRYGVVEV----DSSNQAISIEEKPNNPKSSFAV 170
I + +A + P+ GV E D + + I +
Sbjct: 112 SILERLLEAPGEGLIV------DRRPRYVGVEEATKVKDEGGRIVEIGKDLTEY--DGED 163
Query: 171 TGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLRE--GSAWFDAGTPE 228
GI+ + E D + GL E G W + TPE
Sbjct: 164 IGIFILSDSIFEDTYE----LLVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPE 219
Query: 229 SL 230
L
Sbjct: 220 DL 221
>gnl|CDD|36674 KOG1461, KOG1461, KOG1461, Translation initiation factor 2B,
epsilon subunit (eIF-2Bepsilon/GCD6) [Translation,
ribosomal structure and biogenesis].
Length = 673
Score = 53.8 bits (129), Expect = 6e-08
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 17/179 (9%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
I+LA TR RPLT + +LP+ N PMI Y + L AG+ E+ + + +++
Sbjct: 28 ILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEY 87
Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQS------YILGAEFIGDSSSVLILGDNVFYGSDIS 117
S +W + S+I + +G ++S I + I + +++ + +
Sbjct: 88 IEKS--EWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLI--TGDFILVSGDTVSNMPLR 143
Query: 118 DI--FHKARARRNSATVVG-CHVQNPQRYG----VVEVDSSNQAISIEEKPNNPKSSFA 169
++ H+ R + + ++ ++ R V+ VDS + +K K
Sbjct: 144 NVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVREKHDIQ 202
>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit
of the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of epsilon subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
epsilon shares sequence similarity with gamma subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 217
Score = 46.4 bits (111), Expect = 1e-05
Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 36/192 (18%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILII-STPRDLPVL 61
+VLA R RPLT + +LP+ N P+I Y + L G+ E+ + + D +
Sbjct: 3 AVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQ--I 60
Query: 62 KEFLGSGEKWGVQFSY-IEQLVPAGLAQSYILGAEFIGD------------SSSVLILGD 108
KE++ + + S I ++ + +S +GD +L+ GD
Sbjct: 61 KEYIEKSKWSKPKSSLMIVIIIMSEDCRS-------LGDALRDLDAKGLIRGDFILVSGD 113
Query: 109 NVFYGSDISDIFHKARARR-----NSATVV--GCHVQNPQRYG----VVEVD-SSNQAIS 156
V D+ +I + + RR T+V + R V+ VD +++ +
Sbjct: 114 VV-SNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLH 172
Query: 157 IEEKPNNPKSSF 168
EE P + S
Sbjct: 173 YEELPGSKYRSI 184
>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production.
4-diphosphocytidyl-2-methyl-D-erythritol synthase
(CDP-ME), also called 2C-methyl-d-erythritol
4-phosphate cytidylyltransferase catalyzes the third
step in the alternative (non-mevalonate) pathway of
Isopentenyl diphosphate (IPP) biosynthesis: the
formation of 4-diphosphocytidyl-2C-methyl-D-erythritol
from CTP and 2C-methyl-D-erythritol 4-phosphate. This
mevalonate independent pathway that utilizes pyruvate
and glyceraldehydes 3-phosphate as starting materials
for production of IPP occurs in a variety of bacteria,
archaea and plant cells, but is absent in mammals.
Thus, CDP-ME synthetase is an attractive targets for
the structure-based design of selective antibacterial,
herbicidal and antimalarial drugs.
Length = 218
Score = 45.6 bits (109), Expect = 2e-05
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLK 62
I+LA GSG+R+ KQ L + KP++ + + + I EI+++ P D+ + K
Sbjct: 4 IILAAGSGSRMGADI---PKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAK 60
Query: 63 E 63
E
Sbjct: 61 E 61
>gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the
biosynthesis of the polysaccharide capsule.
GT2_BcbE_like: The bcbE gene is one of the genes in the
capsule biosynthetic locus of Pasteurella multocida. Its
deducted product is likely involved in the biosynthesis
of the polysaccharide capsule, which is found on surface
of a wide range of bacteria. It is a subfamily of
Glycosyltransferase Family GT2, which includes diverse
families of glycosyltransferases with a common GT-A type
structural fold, which has two tightly associated
beta/alpha/beta domains that tend to form a continuous
central sheet of at least eight beta-strands. These are
enzymes that catalyze the transfer of sugar moieties
from activated donor molecules to specific acceptor
molecules, forming glycosidic bonds.
Length = 231
Score = 44.6 bits (106), Expect = 3e-05
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 7/175 (4%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
I+ G G+R + K ++ + KPMI + + +L + I RD K
Sbjct: 2 IIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFIC--RDEHNTKF 59
Query: 64 FLGSGEKWGVQFSYIEQL--VPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFH 121
L K + + +L G A + +L A+ I + +LI + SD+
Sbjct: 60 HLDESLKLLAPNATVVELDGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLA 119
Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFY 176
R R V+ +P R+ V++D + + I EK P S A G+Y++
Sbjct: 120 AFRERDLDGGVLTFFSSHP-RWSYVKLDENGRVIETAEK--EPISDLATAGLYYF 171
>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the
glycosyltransferase family 2 (GT-2) with unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 186
Score = 44.5 bits (106), Expect = 4e-05
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 12/136 (8%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
I+LA G +R+ +K +LP+ KP++ + + + AG+ ++++ V
Sbjct: 3 AIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRA 57
Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFI-GDSSSVLI-LGDNVFYGSDISDIF 120
G + + E G++ S G E + D+ +VLI L D ++
Sbjct: 58 ALAGLPVVVVINPDWEE-----GMSSSLAAGLEALPADADAVLILLADQPLVTAETLRAL 112
Query: 121 HKARARRNSATVVGCH 136
A + V +
Sbjct: 113 IDAFREDGAGIVAPVY 128
>gnl|CDD|31404 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase
[Lipid metabolism].
Length = 230
Score = 43.3 bits (102), Expect = 8e-05
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVL 61
++LA G G+R+ + KQ L + +P++ + + +++ I EI+++ +P D P
Sbjct: 7 AVILAAGFGSRMGNP---VPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYF 63
Query: 62 KEFL 65
++
Sbjct: 64 EKLP 67
>gnl|CDD|32251 COG2068, COG2068, Uncharacterized MobA-related protein [General
function prediction only].
Length = 199
Score = 43.0 bits (101), Expect = 1e-04
Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 13/139 (9%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
+VLA G +R+ K + P+ KP++ T + AG+ +++++ R ++
Sbjct: 8 AVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVE 62
Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSS--SVLILGDNVFYGSDISDIF 120
L GV GL+ S G VL+LGD +
Sbjct: 63 ALLAQL---GVTVVVNPD-YAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPA--TVR 116
Query: 121 HKARARRNSATVVGCHVQN 139
A R V
Sbjct: 117 RLIAAFRARGAAVRPVYGG 135
>gnl|CDD|32447 COG2266, COG2266, GTP:adenosylcobinamide-phosphate
guanylyltransferase [Coenzyme metabolism].
Length = 177
Score = 41.4 bits (97), Expect = 3e-04
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
M I++AGG GTR+ K +L + KP+I + L + EI++ +P P
Sbjct: 1 MMAIIMAGGRGTRM----GRPEKPLLEVCGKPLIDRVLEALRKI-VDEIIVAISP-HTPK 54
Query: 61 LKEFLGSGEKWGVQF------SYIEQL 81
KE+L E GV+ Y+E L
Sbjct: 55 TKEYL---ESVGVKVIETPGEGYVEDL 78
>gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase
catalyzes the formation of GDP-Mannose.
GDP-mannose-1-phosphate guanylyltransferase, also
called GDP-mannose pyrophosphorylase (GDP-MP),
catalyzes the formation of GDP-Mannose from
mannose-1-phosphate and GTP. Mannose is a key
monosaccharide for glycosylation of proteins and
lipids. GDP-Mannose is the activated donor for
mannosylation of various biomolecules. This enzyme is
known to be bifunctional, as both mannose-6-phosphate
isomerase and mannose-1-phosphate guanylyltransferase.
This CD covers the N-terminal GDP-mannose-1-phosphate
guanylyltransferase domain, whereas the isomerase
function is located at the C-terminal half. GDP-MP is a
member of the nucleotidyltransferase family of enzymes.
Length = 274
Score = 39.9 bits (94), Expect = 0.001
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 1 MKGIVLAGGSGTRLRPL-TDLLSKQMLPIY-NKPMI 34
+ ++LAGGSGTRL PL + KQ L ++ +K ++
Sbjct: 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLL 36
>gnl|CDD|31089 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis
protein A [Coenzyme metabolism].
Length = 192
Score = 38.4 bits (89), Expect = 0.002
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
M G++LAGG R+R K +LP+ +P+I + + L ++++IS R+
Sbjct: 5 MTGVILAGGKSRRMRD------KALLPLNGRPLIEHVIDRL--RPQVDVVVISANRNQGR 56
Query: 61 LKEF 64
EF
Sbjct: 57 YAEF 60
>gnl|CDD|31178 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell
envelope biogenesis, outer membrane].
Length = 333
Score = 34.4 bits (79), Expect = 0.033
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 1 MKGIVLAGGSGTRLRPL-TDLLSKQMLPIY-NKPMIYYPVSTLMD-AGIREILIIS 53
M ++LAGGSG+RL PL KQ L ++ + ++ V L I E L+++
Sbjct: 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVT 57
>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin
guanine dinucleotide. The prokaryotic enzyme
molybdopterin-guanine dinucleotide biosynthesis protein
A (MobA). All mononuclear molybdoenzymes bind
molybdenum in complex with an organic cofactor termed
molybdopterin (MPT). In many bacteria, including
Escherichia coli, molybdopterin can be further modified
by attachment of a GMP group to the terminal phosphate
of molybdopterin to form molybdopterin guanine
dinucleotide (MGD). This GMP attachment step is
catalyzed by MobA, by linking a guanosine 5'-phosphate
to MPT forming molybdopterin guanine dinucleotide. This
reaction requires GTP, MgCl2, and the MPT form of the
cofactor. It is a reaction unique to prokaryotes, and
therefore may represent a potential drug target.
Length = 181
Score = 34.5 bits (80), Expect = 0.041
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 1 MKGIVLAGGSGTRL-RPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLP 59
+ G++LAGG R+ K +L + KP++ + + L + + ++IS RD
Sbjct: 1 ITGVILAGGKSRRMGGD------KALLELGGKPLLEHVLERL--KPLVDEVVISANRDQE 52
Query: 60 VLKEF 64
Sbjct: 53 RYALL 57
>gnl|CDD|31280 COG1083, NeuA, CMP-N-acetylneuraminic acid synthetase [Cell
envelope biogenesis, outer membrane].
Length = 228
Score = 31.8 bits (72), Expect = 0.22
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 21/110 (19%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
I+ A G ++ +K + KP+I Y + +++ + + ++IS+ + E
Sbjct: 7 IIPARGGSKGIK------NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSE-----E 55
Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSY-------ILGAEFIGDSSSVLIL 106
L +K+G + P LA + E LIL
Sbjct: 56 ILEEAKKYGAKVFLKR---PKELASDRASTIDAALHALESFNIDEDTLIL 102
>gnl|CDD|32046 COG1861, SpsF, Spore coat polysaccharide biosynthesis protein F,
CMP-KDO synthetase homolog [Cell envelope biogenesis,
outer membrane].
Length = 241
Score = 31.0 bits (70), Expect = 0.34
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
I+ A TRL K +LP+ +PMI Y + + + + ++++T D
Sbjct: 6 VIIQARMGSTRLP------GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATS-DKEEDD 58
Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISD 118
G Y+ + + Q +I+ + V + GDN F ++ D
Sbjct: 59 ALEEVCRSHGF---YVFRGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVD 111
>gnl|CDD|145475 pfam02348, CTP_transf_3, Cytidylyltransferase. This family
consists of two main Cytidylyltransferase activities:
1) 3-deoxy-manno-octulosonate cytidylyltransferase,,
EC:2.7.7.38 catalysing the reaction:- CTP +
3-deoxy-D-manno-octulosonate <=> diphosphate +
CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate
cytidylyltransferase EC:2.7.7.43,, catalysing the
reaction:- CTP + N-acylneuraminate <=> diphosphate +
CMP-N-acylneuraminate. NeuAc cytydilyltransferase of
Mannheimia haemolytica has been characterized
describing kinetics and regulation by substrate charge,
energetic charge and amino-sugar demand.
Length = 197
Score = 30.0 bits (68), Expect = 0.90
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIIST 54
I+ A RL K +L + KP+I + + + + + ++++T
Sbjct: 2 AIIPARSGSKRLP------GKNLLKLGGKPLIARVIEAALQSKLFDKVVVAT 47
>gnl|CDD|107344 cd06349, PBP1_ABC_ligand_binding_like_14, Type I periplasmic
ligand-binding domain of uncharacterized ABC (Atpase
Binding Cassette)-type active transport systems. This
subgroup includes the type I periplasmic ligand-binding
domain of uncharacterized ABC (Atpase Binding
Cassette)-type active transport systems that are
predicted to be involved in the uptake of amino acids,
peptides, or inorganic ions. This subgroup has high
sequence similarity to members of the family of
hydrophobic amino acid transporters (HAAT), such as
leucine/isoleucine/valine binding protein (LIVBP);
however its ligand specificity has not been determined
experimentally.
Length = 340
Score = 28.9 bits (65), Expect = 1.7
Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 98 GDSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI 157
V IL N +G +DIF KA + V V + +
Sbjct: 133 LGFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVA--------HEEYVPGEKDFRPTIT 184
Query: 158 EEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARG-ELEITDVNSYY----LDKGLLAV 212
+ NP + ++ Y + IAR R A G ++ + +S Y ++ G AV
Sbjct: 185 RLRDANPDAIILIS----YYNDGAPIARQAR--AVGLDIPVVASSSVYSPKFIELGGDAV 238
Query: 213 EFLREGSAWF-DAGTPE 228
E + +A+F PE
Sbjct: 239 EGVYTPTAFFPGDPRPE 255
>gnl|CDD|177015 CHL00076, chlB, photochlorophyllide reductase subunit B.
Length = 513
Score = 28.8 bits (65), Expect = 1.8
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 204 YLDKGLLAVEFL-REGSAWFDAGTPESLLDTAVFVRNIENRLGLYVACPEEIAYRHD-FI 261
Y + GL+ ++L +E + + TP ++DTA +R I+ L + E ++ +I
Sbjct: 222 YREVGLMTAKYLEKEFGMPYISTTPMGIVDTAECIRQIQKILNKLASDILEKKVDYEKYI 281
Query: 262 NESQFF 267
++ F
Sbjct: 282 DQQTRF 287
>gnl|CDD|144061 pfam00328, Acid_phosphat_A, Histidine acid phosphatase.
Length = 330
Score = 28.6 bits (64), Expect = 2.0
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 36 YPVSTL---MDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYIL 92
P L ++A ++L L WG QL P G Q++ L
Sbjct: 15 TPTKKLPKDLEAWPFKLLSAKHKFGKYDFLNKLQWPLGWG-------QLTPEGRQQAFEL 67
Query: 93 GAEF 96
G
Sbjct: 68 GRYL 71
>gnl|CDD|32607 COG2710, NifD, Nitrogenase molybdenum-iron protein, alpha and beta
chains [Energy production and conversion].
Length = 456
Score = 27.3 bits (60), Expect = 5.4
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 187 IRPSARGELEITDVNSYYLDKGLLAVEFLRE--GSAWFDAGTPESLLDTAVFVRNIENRL 244
IR + +L + G +L E G W + +P + +T F+RN+ L
Sbjct: 227 IRRAPNAKLNL----VLCSRSGRYLARYLEERFGIPWIEVPSPLGIENTDRFLRNLAKLL 282
Query: 245 GLYVACPEEI 254
G PEE+
Sbjct: 283 GKIEEIPEEV 292
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal
enzymes that cleave bonds in peptides at acidic pH.
Pepsin-like aspartic proteases are found in mammals,
plants, fungi and bacteria. These well known and
extensively characterized enzymes include pepsins,
chymosin, renin, cathepsins, and fungal aspartic
proteases. Several have long been known to be medically
(renin, cathepsin D and E, pepsin) or commercially
(chymosin) important. Structurally, aspartic proteases
are bilobal enzymes, each lobe contributing a catalytic
Aspartate residue, with an extended active site cleft
localized between the two lobes of the molecule. The N-
and C-terminal domains, although structurally related by
a 2-fold axis, have only limited sequence homology
except the vicinity of the active site. This suggests
that the enzymes evolved by an ancient duplication
event. Most members of the pepsin family specifically
cleave bonds in peptides that are at least six residues
in length, with hydrophobic residues in both the P1 and
P1' positions. The active site is located at the groove
formed by the two lobes, with an extended loop
projecting over the cleft to form an 11-residue flap,
which encloses substrates and inhibitors in the active
site. Specificity is determined by nearest-neighbor
hydrophobic residues surrounding the catalytic
aspartates, and by three residues in the flap.The
enzymes are mostly secreted from cells as inactive
proenzymes that activate autocatalytically at acidic pH.
This family of aspartate proteases is classified by
MEROPS as the peptidase family A1 (pepsin A, clan AA).
Length = 283
Score = 27.0 bits (60), Expect = 5.9
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 74 QFSYIEQLVPAGLAQ----SYILGAEFIGDSSSVLILG--DNVFYGSDIS 117
S+ +QL GL S+ LG + G + L G D Y D++
Sbjct: 121 VPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLT 170
>gnl|CDD|143916 pfam00148, Oxidored_nitro, Nitrogenase component 1 type
Oxidoreductase.
Length = 398
Score = 26.4 bits (59), Expect = 8.5
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 208 GLLAVEFLRE--GSAWFDAGTPESLLDTAVFVRNIENRLGLYVACPEEIA 255
G A ++L E G + + G+P + T F+R + LG VA PE IA
Sbjct: 205 GRYAAKYLEERFGVPYIELGSPIGIEATDRFLRALAELLGKEVA-PEVIA 253
>gnl|CDD|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR
calcium-sensing receptor, which is a member of the
family C receptors within the G-protein coupled receptor
superfamily. Ligand-binding domain of the CaSR
calcium-sensing receptor, which is a member of the
family C receptors within the G-protein coupled receptor
superfamily. CaSR provides feedback control of
extracellular calcium homeostasis by responding
sensitively to acute fluctuations in extracellular
ionized Ca2+ concentration. This ligand-binding domain
has homology to the bacterial leucine-isoleucine-valine
binding protein (LIVBP) and a leucine binding protein
(LBP). CaSR is widely expressed in mammalian tissues and
is active in tissues that are not directly involved in
extracellular calcium homeostasis. Moreover, CaSR
responds to aromatic, aliphatic, and polar amino acids,
but not to positively charged or branched chain amino
acids, which suggests that changes in plasma amino acid
levels are likely to modulate whole body calcium
metabolism. Additionally, the family C GPCRs includes at
least two receptors with broad-spectrum amino
acid-sensing properties: GPRC6A which recognizes basic
and various aliphatic amino acids, its gold-fish homolog
the 5.24 chemoreceptor, and a specific taste receptor
(T1R) which responds to aliphatic, polar, charged, and
branched amino acids, but not to aromatic amino acids.
Length = 510
Score = 26.5 bits (58), Expect = 8.6
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 157 IEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEF 214
+E+ P N G + N + RP G+ I V + YLD L + +
Sbjct: 341 LEDSPKNALPVDTFLGHEESGDDSENGSTAFRPLCTGDENIASVETPYLDYTHLRISY 398
>gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes
the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine
(UDPGlcNAc) pyrophosphorylase (UAP) (also named
GlcNAc1P uridyltransferase), catalyzes the reversible
conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc.
UDP-N-acetylglucosamine (UDPGlcNAc), the activated form
of GlcNAc, is a key precursor of N- and O-linked
glycosylations. It is essential for the synthesis of
chitin (a major component of the fungal cell wall) and
of the glycosylphosphatidylinositol (GPI) linker which
anchors a variety of cell surface proteins to the
plasma membrane. In bacteria, UDPGlcNAc represents an
essential precursor for both peptidoglycan and
lipopolysaccharide biosynthesis. Human UAP has two
isoforms, resulting from alternative splicing of a
single gene and differing by the presence or absence of
17 amino acids. UDPGlcNAc pyrophosphorylase shares
significant sequence and structure conservation with
UDPglucose pyrophosphorylase.
Length = 323
Score = 26.4 bits (59), Expect = 8.6
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 4 IVLAGGSGTRL 14
++LAGG GTRL
Sbjct: 19 LLLAGGQGTRL 29
>gnl|CDD|38785 KOG3578, KOG3578, KOG3578, Uncharacterized conserved protein
[Function unknown].
Length = 1058
Score = 26.6 bits (58), Expect = 8.8
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 7/128 (5%)
Query: 165 KSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDA 224
F V + D+E I + R LEI N+ + + A+ F + D
Sbjct: 773 VQKFYVFSTFVPDEE---IKSRLLKEHRFSLEIKAPNNAKVYPRMRAIAFRKYIRVLGDP 829
Query: 225 GTPESLLD-TAVFVRNIENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLR 283
+S +D + + N +G YV + + +F F + S L++
Sbjct: 830 DLGQSYIDEFRAIIDQLGNAVG-YVRLLQAGSKNANFFT--HFVTNRFYCYFSQGYLFIE 886
Query: 284 QVVEKKKR 291
+ + KKR
Sbjct: 887 EATDSKKR 894
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.139 0.404
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,650,819
Number of extensions: 197249
Number of successful extensions: 528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 61
Length of query: 292
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,254,100
Effective search space: 846565900
Effective search space used: 846565900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)