RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] (292 letters) >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. Length = 286 Score = 402 bits (1034), Expect = e-113 Identities = 167/286 (58%), Positives = 216/286 (75%) Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61 KGI+LAGGSGTRL P+T +SKQ+LPIY+KPMIYYP+STLM AGIR+ILIISTP+D P Sbjct: 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 60 Query: 62 KEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFH 121 ++ LG G +WGV SY Q P GLAQ++I+G +FIG S L+LGDN+FYG D+SD+ Sbjct: 61 QQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDLLK 120 Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181 +A AR + ATV V +P+RYGVVE DS+ +AISIEEKP PKS++AVTG+YFYD VV Sbjct: 121 RAAARESGATVFAYQVSDPERYGVVEFDSNGRAISIEEKPAQPKSNYAVTGLYFYDNRVV 180 Query: 182 NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNIE 241 IAR ++PSARGELEITD+N YL++G L+VE L G AW D GT +SLL+ + F++ IE Sbjct: 181 EIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQTIE 240 Query: 242 NRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVE 287 R GL VACPEEIA+R+ +I++ Q +L + YG YL +++E Sbjct: 241 KRQGLKVACPEEIAWRNGWIDDEQLEELARPLAKNGYGQYLLRLLE 286 >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional. Length = 292 Score = 334 bits (857), Expect = 2e-92 Identities = 154/286 (53%), Positives = 207/286 (72%) Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61 KGI+LAGGSGTRL P+T +SKQ+LPIY+KPMIYYP+STLM AGIR+ILIISTP+D P Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64 Query: 62 KEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFH 121 ++ LG G +WG+ Y Q P GLAQ++I+G EFIG L+LGDN+FYG D+ + Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLME 124 Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181 A + + ATV HV +P+RYGVVE D + AIS+EEKP PKS++AVTG+YFYD +VV Sbjct: 125 AAVNKESGATVFAYHVNDPERYGVVEFDQNGTAISLEEKPLQPKSNYAVTGLYFYDNDVV 184 Query: 182 NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNIE 241 +A+N++PSARGELEITD+N Y+++G L+V + G AW D GT +SL++ + F+ IE Sbjct: 185 EMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIE 244 Query: 242 NRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVE 287 R GL V+CPEEIA+R FI+ Q L + + YG YL ++++ Sbjct: 245 ERQGLKVSCPEEIAFRKGFIDAEQVKVLAEPLKKNAYGQYLLKMIK 290 >gnl|CDD|162250 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase. Length = 353 Score = 196 bits (499), Expect = 7e-51 Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 2/231 (0%) Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61 K ++LA G GTRLRPLT KQ++P+ NKP++ Y + L +AGI +I I+ P + Sbjct: 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEI 60 Query: 62 KEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFH 121 KE +G GE++G + +YI Q P GLA + +F+GD V+ LGDN+ IS Sbjct: 61 KEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQD-GISRFVK 119 Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181 + A ++ V++P +GV ++ + + + EKP P S+ AV G+Y + + Sbjct: 120 SFEEKDYDALILLTKVRDPTAFGVAVLEDGKRILKLVEKPKEPPSNLAVVGLYMFRPLIF 179 Query: 182 NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLD 232 +NI+PS RGELEITD + ++KG V + W D G PE LLD Sbjct: 180 EAIKNIKPSWRGELEITDAIQWLIEKG-YKVGGSKVTGWWKDTGKPEDLLD 229 >gnl|CDD|162203 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF. Length = 260 Score = 88.9 bits (221), Expect = 1e-18 Identities = 68/269 (25%), Positives = 111/269 (41%), Gaps = 45/269 (16%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILII--STPRDL 58 K ++ A G GTR P T + K+MLPI +KP+I Y V ++AGI +ILI+ R + Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAI 60 Query: 59 -------PVLKEFLGSGEKWG--------------VQFSYIEQLVPAGLAQSYILGAEFI 97 L+ L EK G Y+ Q GL + + F+ Sbjct: 61 EDHFDTSYELEHQL---EKRGKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFV 117 Query: 98 GDSSSVLILGDNVF--YGSDISDIFHKARARRNSA----TVVGCHVQNPQRYGVVEVDSS 151 GD +ILGD++ + + S V V +YGV++ + Sbjct: 118 GDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKEEV---SKYGVIDGEGV 174 Query: 152 NQAI----SIEEKPN--NPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYL 205 + + + EKP S+ A+ G Y ++ ++ P A GE+++TD L Sbjct: 175 EEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLL 234 Query: 206 DKG-LLAVEFLREGSAWFDAGTPESLLDT 233 +K + A +F +G +D G+ L Sbjct: 235 EKETVYAYKF--KGKR-YDCGSKLGYLKA 260 >gnl|CDD|162696 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. Length = 361 Score = 77.7 bits (192), Expect = 3e-15 Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 36/207 (17%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLPVL 61 +VLAGG G+RL PLT +K +P K +I +P+S +++GIR I +++ + L Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSH-SL 59 Query: 62 KEFLGSGEKW---GVQFSYIEQLVPAGLAQSYILGAE-FIGDSSS--------------- 102 + G W G ++ L+P AQ G + + G + + Sbjct: 60 NRHIQRG--WDFDGFIDGFVT-LLP---AQQRESGTDWYQGTADAVYQNLDLIEDYDPEY 113 Query: 103 VLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQ--RYGVVEVDSSNQAISIEEK 160 VLIL + Y D + T+ V + R+GV++VD + + EEK Sbjct: 114 VLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEK 173 Query: 161 PNNPKS-------SFAVTGIYFYDQEV 180 P NP S + A GIY +D++V Sbjct: 174 PANPPSIPGMPDFALASMGIYIFDKDV 200 >gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional. Length = 302 Score = 66.5 bits (162), Expect = 8e-12 Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 40/244 (16%) Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61 K ++ G GTR+ P T + K+MLP+ +KP+I Y V+ + AGI EI++++ + Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69 Query: 62 KEFLGSGE---------------------KWGVQFSYIEQLVPAGLAQSYILGAEFIGDS 100 F S E V + Q + GL + + +GD Sbjct: 70 NHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDE 129 Query: 101 SSVLILGDNVF--YGSDISDIFHKARARRNSATVVGCH------VQNPQRYGVVEVD--- 149 +IL D + Y SD+S RR T G V + YGVV+ Sbjct: 130 PVAVILPDVILDEYESDLSQDNLAEMIRRFDET--GHSQIMVEPVADVTAYGVVDCKGVE 187 Query: 150 ----SSNQAISIEEKP--NNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSY 203 S + + EKP + S+ A+ G Y ++ + P A E+++TD Sbjct: 188 LAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDM 247 Query: 204 YLDK 207 ++K Sbjct: 248 LIEK 251 >gnl|CDD|172831 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 459 Score = 62.5 bits (152), Expect = 1e-10 Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 15/214 (7%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 I+LA G GTR++ +DL+ K M P+ +PM+ +PV+ +AG I+++ + V + Sbjct: 7 IILAAGKGTRMK--SDLV-KVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREH 63 Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDN-VFYGSDISDIFH 121 F G G+ V F+ E+ + G A + A G S +VLIL GD + + + Sbjct: 64 FAGDGD---VSFALQEEQLGTGHAVACAAPA-LDGFSGTVLILCGDVPLLRAETLQGMLA 119 Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNPKSSFAV---TGIYFYD 177 RA + TV+ ++NP YG + D+ + + I EEK P+ +GIY + Sbjct: 120 AHRATGAAVTVLTARLENPFGYGRIVRDADGRVLRIVEEKDATPEERSIREVNSGIYCVE 179 Query: 178 QEVV--NIARNIRPSARGELEITDVNSYYLDKGL 209 + I R +A+GE +TD+ + +GL Sbjct: 180 AAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGL 213 >gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional. Length = 297 Score = 62.2 bits (151), Expect = 1e-10 Identities = 58/237 (24%), Positives = 93/237 (39%), Gaps = 38/237 (16%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 +K ++ G G + P T + K+MLPI +KPMI Y V ++ AGI+EI++++ V Sbjct: 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63 Query: 61 LKEFLGSGE---------------------KWGVQFSYIEQLVPAGLAQSYILGAEFIGD 99 F S E GV + Q P GL S + IGD Sbjct: 64 ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGD 123 Query: 100 SSSVLILGDNVFYGSDISDIFHK-----ARARRNSATVVGCH--VQNPQRYGVVE----V 148 + V++L D V + + + AR + V + Y V++ + Sbjct: 124 NPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPL 183 Query: 149 DSSNQAISIE---EKPNNPK---SSFAVTGIYFYDQEVVNIARNIRPSARGELEITD 199 D + I EKP+ P+ S G Y ++ P A G +++TD Sbjct: 184 DREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLTD 240 >gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose. Length = 297 Score = 60.0 bits (145), Expect = 6e-10 Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 38/237 (16%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 +K ++ G G + P T + K+MLPI +KPMI Y V ++ AGI+EI++++ V Sbjct: 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63 Query: 61 LKEFLGSGE---------------------KWGVQFSYIEQLVPAGLAQSYILGAEFIGD 99 F S E GV + Q P GL S + +GD Sbjct: 64 ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGD 123 Query: 100 SSSVLILGDNVFYGSDISDIFHKAR---ARRN----SATVVGCHVQNPQRYGVVE----V 148 + V++L D + + + + AR N S + + Y V++ + Sbjct: 124 NPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPL 183 Query: 149 DSSNQAISIE---EKPNNPK---SSFAVTGIYFYDQEVVNIARNIRPSARGELEITD 199 D + I EKP+ P+ S G Y ++ P A G +++TD Sbjct: 184 DREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTD 240 >gnl|CDD|179099 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional. Length = 425 Score = 57.9 bits (141), Expect = 3e-09 Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 53/215 (24%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLPVLK 62 ++LAGG G+RL+ LTD +K + K +I + +S +++GIR I +++ + +++ Sbjct: 19 LILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIR 78 Query: 63 E------FLGS--GEKWGVQFSYIEQLVPA-----------GLAQS-----YILGAEFIG 98 F GE +++ L+PA G A + I+ Sbjct: 79 HIQRGWSFFREELGE-------FVD-LLPAQQRVDEENWYRGTADAVYQNLDIIRRY--- 127 Query: 99 DSSSVLIL-GDNVFYGSDISDIFHKARARRNSATV-VGCHVQNP----QRYGVVEVDSSN 152 D V+IL GD++ Y D S + A + A V C ++ P +GV+ VD ++ Sbjct: 128 DPKYVVILAGDHI-YKMDYSRML--ADHVESGADCTVAC-LEVPREEASAFGVMAVDEND 183 Query: 153 QAISIEEKPNNPKS-------SFAVTGIYFYDQEV 180 + + EKP NP + S A GIY ++ + Sbjct: 184 RITAFVEKPANPPAMPGDPDKSLASMGIYVFNADY 218 >gnl|CDD|172834 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 481 Score = 55.8 bits (134), Expect = 1e-08 Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 18/249 (7%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 ++LA G GTR++ L K + P+ +PM+ + V D G R+I++++ V Sbjct: 11 VILAAGQGTRMK---SALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAA 67 Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFI--GDSSSVLILGDNVFYGSD-ISDIF 120 GS GV F+ EQ + G +++ GA + GD+ +++ GD D + + Sbjct: 68 LQGS----GVAFARQEQQL--GTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALV 121 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAV----TGIYFY 176 RA+ ++ T++ + + YG + + I E+ + + A+ +G+Y + Sbjct: 122 ADHRAQGSAMTILTGELPDATGYGRIVRGADGAVERIVEQKDATDAEKAIGEFNSGVYVF 181 Query: 177 DQEVVNIARNI-RPSARGELEITDVNSYYLDKGLLAVEF-LREGSAWFDAGTPESLLDTA 234 D +AR I + GE +TD+ Y G F L + A L Sbjct: 182 DARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLE 241 Query: 235 VFVRNIENR 243 +R N Sbjct: 242 ATLRRRINE 250 >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional. Length = 380 Score = 54.9 bits (133), Expect = 2e-08 Identities = 71/256 (27%), Positives = 117/256 (45%), Gaps = 35/256 (13%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLP 59 M ++LAGG GTRL LT ++K +P K +I + +S ++GI + +++ + L Sbjct: 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPL- 62 Query: 60 VLKEFLGSGEKWGV--QFSYIEQLVP----------AGLAQSYILGAEFIG--DSSSVLI 105 L +G G W + + L P G A + ++I D VLI Sbjct: 63 ELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLI 122 Query: 106 L-GDNVFYGSDISDI--FHKARARRNSATVVGCHVQNPQ--RYGVVEVDSSNQAISIEEK 160 L GD++ Y D + +HK + T+ V + R+G++ D + + + EEK Sbjct: 123 LSGDHI-YKMDYDKMLDYHKEKEA--DVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEK 179 Query: 161 PNNPKSSFAVTGIYFYDQEV-----VNIARNIRPSAR-GELEITDVNSYYLDKGLLAVEF 214 P NPKS+ A GIY ++ + + +N S G+ +V YL++G + Sbjct: 180 PKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGK----NVIPLYLEEGEKLYAY 235 Query: 215 LREGSAWFDAGTPESL 230 +G W D GT ESL Sbjct: 236 PFKGY-WKDVGTIESL 250 >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 458 Score = 53.3 bits (129), Expect = 8e-08 Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 23/217 (10%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLPVLK 62 I+LA G GTR++ L K + + KPM+ + V ++ AGI +I ++ + +K Sbjct: 6 IILAAGKGTRMK---SKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEE--VK 60 Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSS-SVLIL-GDN-VFYGSDISDI 119 E LG ++ +Q EQL G + + EF+ D + L++ GD + + ++ Sbjct: 61 EVLGDRSEFALQ---EEQL---GTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNL 114 Query: 120 FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNPKSSFAV----TGIY 174 + +AT++ +NP YG + + + + I E+K + + TG Y Sbjct: 115 IDFHEEHKAAATILTAIAENPTGYGRIIRNENGEVEKIVEQKDATEEEK-QIKEINTGTY 173 Query: 175 FYD-QEVVNIARNIRP-SARGELEITDVNSYYLDKGL 209 +D + + + I +A+GE +TDV ++G Sbjct: 174 CFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGE 210 >gnl|CDD|184644 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 448 Score = 52.5 bits (126), Expect = 1e-07 Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 19/207 (9%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 M+ +VLA G GTR++ + K + I KPMI + + T + +++ +L Sbjct: 1 MRALVLAAGKGTRMK---SKIPKVLHKISGKPMINWVIDTAKKVAQKVGVVLGHEAEL-- 55 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSD-ISD 118 +K+ L +W F EQL G A + + +FI +LIL GD + + Sbjct: 56 VKKLL---PEWVKIFLQEEQL---GTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKR 109 Query: 119 IFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEK--PNNPKSSFAV-TGIYF 175 + + + T++ +++P YG + D I +E+K P K + TGIY Sbjct: 110 LIEEHNRKGADVTILVADLEDPTGYGRIIRDGGKYRI-VEDKDAPEEEKKIKEINTGIYV 168 Query: 176 YDQEVV--NIARNIRPSARGELEITDV 200 + + + + + +A+GE +TD Sbjct: 169 FSGDFLLEVLPKIKNENAKGEYYLTDA 195 >gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. Length = 254 Score = 51.3 bits (123), Expect = 3e-07 Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 50/193 (25%) Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61 K ++LAGG GTR+ T L K M+ I KP++++ + GI + +I + V+ Sbjct: 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGY-VI 59 Query: 62 KEFLGS-----------------------GEKWGVQFSYIEQLVPAGLAQSYILG----- 93 KE+ + E W V LV G + G Sbjct: 60 KEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRV------TLVDTG-ESTQTGGRLKRV 112 Query: 94 AEFIGDSSSVLILGDNVFYGSDISDI-----FHKARARRNSATVVGCHVQNPQRYGVVEV 148 E++ D + GD V +DI DI FH+ ++ ATV VQ P R+G +++ Sbjct: 113 REYLDDEAFCFTYGDGV---ADI-DIKALIAFHRKHGKK--ATVTA--VQPPGRFGALDL 164 Query: 149 DSSNQAISIEEKP 161 + Q S +EKP Sbjct: 165 E-GEQVTSFQEKP 176 >gnl|CDD|129545 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. Length = 217 Score = 51.1 bits (123), Expect = 3e-07 Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 14/105 (13%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDA-GIREILIISTPRDLPVLK 62 ++ A G GTR + KQ L + +P++ + + + I E++++ +P D + Sbjct: 3 VIPAAGRGTRFGSG---VPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQ 59 Query: 63 EFLGSGEKWGVQFSYIEQLVPAGL--AQSYILGAEFIGDSSSVLI 105 ++L + ++V G S G + + D+ VL+ Sbjct: 60 KYLVARAVP--------KIVAGGDTRQDSVRNGLKALKDAEWVLV 96 >gnl|CDD|162697 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. Length = 369 Score = 49.3 bits (118), Expect = 1e-06 Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 17/195 (8%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLP 59 M I+ S L PLT + LP + +I +P+S +++AGIR + I ++ Sbjct: 3 MSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQ 62 Query: 60 VLKEFLGSGEKWGVQ------FSYIEQ----LVPAGLAQSYILGAEFIGDSSS--VLILG 107 L + LGSG +W + F + L G EF+ S+S ++L Sbjct: 63 SLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGKRYFSQN-LEFLKRSTSEYTVVLN 121 Query: 108 DNVFYGSDISDIFHKARARRNSATVVGCHVQNPQ---RYGVVEVDSSNQAISIEEKPNNP 164 ++ D+ + TVV V+ ++ D S + SI + N Sbjct: 122 SHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPE 181 Query: 165 KSSFAVTGIYFYDQE 179 + IY + Sbjct: 182 EEENISLDIYIVSTD 196 >gnl|CDD|179140 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional. Length = 407 Score = 49.4 bits (119), Expect = 1e-06 Identities = 56/215 (26%), Positives = 82/215 (38%), Gaps = 53/215 (24%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLP---IYNKPMIYYPVSTLMDAGIREILIISTPRDLP 59 IVLAGG G RL PLT +K +P Y +I + +S L+++G I Sbjct: 8 AIVLAGGEGKRLMPLTADRAKPAVPFGGSYR--LIDFVLSNLVNSGYLRIY--------- 56 Query: 60 VLKEFLGSG------EKW---GVQFSYIEQLVPA----------GLAQSYILGAEFIGDS 100 VL ++ + W G+ +YI VPA G A + I D Sbjct: 57 VLTQYKSHSLDRHISQTWRLSGLLGNYIT-PVPAQQRLGKRWYLGSADAIYQSLNLIEDE 115 Query: 101 SS--VLILG-DNVFYGSDISDI--FHKARARRNSATVVGCHV---QNPQRYGVVEVDSSN 152 V++ G D+V Y D + FH TV V + +GV+EVD Sbjct: 116 DPDYVVVFGADHV-YRMDPRQMVDFHIESGA--GVTVAAIRVPREEASA-FGVIEVDPDG 171 Query: 153 QAISIEEKPNNPKS-------SFAVTGIYFYDQEV 180 + EKP +P + A G Y + + Sbjct: 172 RIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDA 206 >gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. Length = 451 Score = 48.4 bits (116), Expect = 2e-06 Identities = 49/212 (23%), Positives = 94/212 (44%), Gaps = 17/212 (8%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 ++LA G GTR++ L K + P+ KPM+ + + G ++I ++ V K Sbjct: 4 VILAAGKGTRMK---SDLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKA 60 Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSDISDIFHK 122 W + Q G + + F+ D VL+L GD ++ + + Sbjct: 61 LANRDVNW------VLQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLE 114 Query: 123 ARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNP--KSSFAV-TGIYFYDQ 178 A R+N T++ + +P YG + ++ + +I E+K N K+ + TG+Y +D Sbjct: 115 A-HRQNGITLLTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINTGVYVFDG 173 Query: 179 EVVN--IARNIRPSARGELEITDVNSYYLDKG 208 + + + +A+GE +TDV + + G Sbjct: 174 AALKRWLPKLSNNNAQGEYYLTDVIALAVADG 205 >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional. Length = 429 Score = 44.1 bits (105), Expect = 4e-05 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILII 52 I+L GG+GTRL PLT L +K +P+ K +I P+S +++GI +I ++ Sbjct: 6 AIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVL 56 >gnl|CDD|178905 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed. Length = 227 Score = 42.0 bits (100), Expect = 2e-04 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 10/64 (15%) Query: 4 IVLAGGSGTRL---RPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLP 59 I+ A G G+R+ RP KQ LP+ KP++ + + + I EI+++ P D P Sbjct: 7 IIPAAGKGSRMGADRP------KQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRP 60 Query: 60 VLKE 63 E Sbjct: 61 DFAE 64 >gnl|CDD|177884 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase. Length = 436 Score = 40.2 bits (95), Expect = 6e-04 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPI---YNKPMIYYPVSTLMDAGIREILII 52 I+L GG+GTRL PLT +K +PI Y +I P+S +++GI +I ++ Sbjct: 6 AIILGGGAGTRLFPLTKRRAKPAVPIGGNYR--LIDIPMSNCINSGINKIYVL 56 Score = 29.8 bits (68), Expect = 0.93 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 103 VLIL-GDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQ--RYGVVEVDSSNQAISIEE 159 VLIL GD++ Y D D K R T+ V + +G++++D + + I E Sbjct: 125 VLILSGDHL-YRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSE 183 Query: 160 KP 161 KP Sbjct: 184 KP 185 >gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 446 Score = 39.8 bits (94), Expect = 8e-04 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 27/168 (16%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 I+LA G GTR++ L K + P+ +PM+ + ++ G + ++ + Sbjct: 9 IILAAGEGTRMK---SSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVV-VGPGAEAVAA 64 Query: 64 FLGSGEKWGVQFSYIEQL-----VPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSDIS 117 F E+L V A A+ + A GD VL+L GD I+ Sbjct: 65 AAAKIAPDAEIFVQKERLGTAHAVLA--AREAL--AGGYGD---VLVLYGDTPL----IT 113 Query: 118 -DIFHKARARR---NSATVVGCHVQNPQRYG-VVEVDSSNQAISIEEK 160 + + R R V+G +P YG ++ AI +EEK Sbjct: 114 AETLARLRERLADGADVVVLGFRAADPTGYGRLIVKGGRLVAI-VEEK 160 >gnl|CDD|129546 TIGR00454, TIGR00454, conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea. Length = 183 Score = 38.4 bits (89), Expect = 0.002 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 12/128 (9%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 M +++AGG GTRL + K ++ + + +I + +S L+ + + I+I ++P P Sbjct: 1 MDALIMAGGKGTRL----GGVEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSP-HTPK 55 Query: 61 LKEFLGSGEKWGVQFS---YIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDIS 117 +E++ S K S YIE L + F+ SS ++ L + I Sbjct: 56 TEEYINSAYKDYKNASGKGYIEDLNECIGELYF--SEPFLVVSSDLINLRSKII--DSIV 111 Query: 118 DIFHKARA 125 D ++ +A Sbjct: 112 DYYYCIKA 119 >gnl|CDD|181813 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional. Length = 378 Score = 38.3 bits (90), Expect = 0.002 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLK 62 +++A G TR KQ L I KP+ + + L A +EI+++ P D+ +K Sbjct: 9 VIVAAGRSTRFSAEVK---KQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMK 65 Query: 63 EFLG 66 + L Sbjct: 66 KALP 69 >gnl|CDD|163213 TIGR03310, matur_ygfJ, molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. Length = 188 Score = 37.7 bits (88), Expect = 0.003 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 12/133 (9%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62 I+LA G +R+ +K +LP K ++ + V + E++++ + Sbjct: 2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADEL-- 54 Query: 63 EFLGSGEKWGVQFSYIEQLVPA-GLAQSYILGAEFIGDSSSVLI-LGDNVFYGSDISDIF 120 + + A G + S LG E S L LGD F DI + Sbjct: 55 -VALLANHSNIT--LVHNPQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLL 111 Query: 121 HKARARRNSATVV 133 +A A +N VV Sbjct: 112 LEAFALKNDEIVV 124 >gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 482 Score = 34.5 bits (80), Expect = 0.034 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 16/128 (12%) Query: 82 VPAGLAQSYILGAEFIGDSSSVLIL-GDN-VFYGSDISDIFHKARARRNSATVVGCHVQN 139 V L L A+F G +V++ GD + G ++D+ A N+ TV+ + + Sbjct: 87 VQCALEA---LPADFDG---TVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDD 140 Query: 140 PQRYGVVEVDSSNQAISI-EEKPNNPKSSFAV----TGIYFYDQEVVN--IARNIRPSAR 192 P YG + D + +I E+K P S A+ +G+Y +D V+ +AR +A+ Sbjct: 141 PTGYGRILRDQDGEVTAIVEQKDATP-SQRAIREVNSGVYAFDAAVLRSALARLSSDNAQ 199 Query: 193 GELEITDV 200 GEL +TDV Sbjct: 200 GELYLTDV 207 >gnl|CDD|162382 TIGR01479, GMP_PMI, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. Length = 468 Score = 33.8 bits (78), Expect = 0.046 Identities = 15/26 (57%), Positives = 20/26 (76%), Gaps = 1/26 (3%) Query: 4 IVLAGGSGTRLRPLT-DLLSKQMLPI 28 ++LAGGSGTRL PL+ +L KQ L + Sbjct: 4 VILAGGSGTRLWPLSRELYPKQFLAL 29 >gnl|CDD|178976 PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed. Length = 193 Score = 30.9 bits (71), Expect = 0.35 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 10/66 (15%) Query: 1 MKGIVLAGGSGTRL--RPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDL 58 + G++LAGG R+ K + + KP+I + + L A + ++I+ R+L Sbjct: 4 ITGVILAGGRSRRMGGVD------KGLQELNGKPLIQHVIERL--APQVDEIVINANRNL 55 Query: 59 PVLKEF 64 F Sbjct: 56 ARYAAF 61 >gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 450 Score = 29.9 bits (68), Expect = 0.85 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 13/126 (10%) Query: 96 FIGDSSSVLILGDNV--FYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQ 153 F GD +L+L +V + + + R+ T++ + NP+ YG V D +N Sbjct: 93 FEGD---LLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNL 149 Query: 154 AISI-EEKPNNP---KSSFAVTGIY-FYDQEVVNIARNIRP-SARGELEITDVNSYYLDK 207 I E++ P +++ GIY F + + + + + E +TD S LD Sbjct: 150 VEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVS-LLDP 208 Query: 208 GLLAVE 213 ++AVE Sbjct: 209 -VMAVE 213 >gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 456 Score = 29.6 bits (67), Expect = 0.85 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 14/111 (12%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLP 59 M ++LA G GTR+ +D L K + + KPM+ + + + G + + L+ DL Sbjct: 6 MSVVILAAGKGTRM--YSD-LPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDL- 61 Query: 60 VLKEFLGSGE-KWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GD 108 LK+ L W +Q EQL G + A F D +L+L GD Sbjct: 62 -LKQTLADEPLNWVLQ---AEQL---GTGHAMQQAAPFFADDEDILMLYGD 105 >gnl|CDD|184645 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 430 Score = 29.6 bits (67), Expect = 0.90 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYY 36 I+LA G GTR++ K + I KPM++Y Sbjct: 6 IILAAGKGTRMKSSL---PKVLHTICGKPMLFY 35 >gnl|CDD|185357 PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional. Length = 478 Score = 29.6 bits (66), Expect = 1.0 Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%) Query: 4 IVLAGGSGTRLRPLTDLL-SKQML 26 +V+AGGSG+RL PL+ +L KQ L Sbjct: 9 VVMAGGSGSRLWPLSRVLYPKQFL 32 >gnl|CDD|163336 TIGR03584, PseF, pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Length = 222 Score = 29.2 bits (66), Expect = 1.4 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 6/51 (11%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIIST 54 I+ A G R+ K + P KPMI Y + +++G+ + +++ST Sbjct: 3 IIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVST 47 >gnl|CDD|179687 PRK03968, PRK03968, DNA primase large subunit; Validated. Length = 399 Score = 28.9 bits (65), Expect = 1.6 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%) Query: 251 PEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI 292 + Y D + F+ L+ SPYG VVE +I Sbjct: 58 HSDYEYLFDLL---SFYALLGALAFSPYGREAELVVESNGKI 96 >gnl|CDD|152575 pfam12140, DUF3588, Protein of unknown function (DUF3588). This family of proteins is found in eukaryotes. Proteins in this family are typically between 129 and 866 amino acids in length, and the family is found in association with pfam02820. The exact function of this family is not known. Length = 118 Score = 28.9 bits (65), Expect = 1.6 Identities = 10/28 (35%), Positives = 19/28 (67%) Query: 260 FINESQFFQLIDHFGNSPYGLYLRQVVE 287 ++++ + QL DHFG P + L++VV+ Sbjct: 18 YLDKKKVQQLPDHFGPGPVNVVLKEVVQ 45 >gnl|CDD|184401 PRK13927, PRK13927, rod shape-determining protein MreB; Provisional. Length = 334 Score = 28.1 bits (64), Expect = 2.6 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%) Query: 2 KGIVLAGGSGTRLRPLTDLLSKQM-LPIY 29 +GIVL GG G LR L LLS++ LP++ Sbjct: 278 RGIVLTGG-GALLRGLDKLLSEETGLPVH 305 >gnl|CDD|184686 PRK14454, PRK14454, ribosomal RNA large subunit methyltransferase N; Provisional. Length = 342 Score = 27.3 bits (61), Expect = 5.1 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%) Query: 18 TDLLSKQMLPIYNKPMIYYPVSTLMDA 44 D L K+M+PI NK Y + L++A Sbjct: 218 NDELRKKMMPIANK----YSIEELIEA 240 >gnl|CDD|183106 PRK11375, PRK11375, allantoin permease; Provisional. Length = 484 Score = 27.1 bits (60), Expect = 5.3 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 6/46 (13%) Query: 76 SYIEQLV--PAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDI 119 S+ Q + GL +YIL A +S +I G ++ YG+D ++ Sbjct: 256 SFRAQALGQTLGLVVAYILFAV----ASVCIIAGASIHYGADTWNV 297 >gnl|CDD|178329 PLN02728, PLN02728, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Length = 252 Score = 27.0 bits (60), Expect = 6.0 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMD-AGIREILIISTP 55 I+LAGG G R+ + KQ LP+ +P+ Y + T ++EI+++ P Sbjct: 28 ILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDP 77 >gnl|CDD|183141 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional. Length = 1123 Score = 26.8 bits (60), Expect = 6.1 Identities = 11/27 (40%), Positives = 13/27 (48%) Query: 105 ILGDNVFYGSDISDIFHKARARRNSAT 131 LG F +I D+FHK R N A Sbjct: 69 RLGKEGFLPDEILDVFHKLRKIGNKAV 95 >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. Length = 333 Score = 26.6 bits (59), Expect = 7.1 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Query: 2 KGIVLAGGSGTRLRPLTDLLSKQM-LPIY 29 +GIVL GG G LR L LLSK+ LP+ Sbjct: 281 RGIVLTGG-GALLRNLDKLLSKETGLPVI 308 >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated. Length = 562 Score = 26.6 bits (59), Expect = 8.5 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Query: 26 LPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKW 71 LP+Y+ + +M G ILI S PRDLP + + LG KW Sbjct: 258 LPLYHIYAFTFHCMAMMLIGNHNILI-SNPRDLPAMVKELG---KW 299 >gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase. Length = 788 Score = 26.3 bits (58), Expect = 8.9 Identities = 14/32 (43%), Positives = 19/32 (59%) Query: 197 ITDVNSYYLDKGLLAVEFLREGSAWFDAGTPE 228 IT + Y+ + LAVE +R G A+ D TPE Sbjct: 333 ITYTSDYFQELYELAVELIRRGHAYVDHQTPE 364 >gnl|CDD|180277 PRK05826, PRK05826, pyruvate kinase; Provisional. Length = 465 Score = 26.3 bits (59), Expect = 9.7 Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 225 GTPESLLDTAVFVRNIENRLGLYVA 249 G+ E A VR I +LG VA Sbjct: 40 GSHEEHGKRAALVREIAAKLGRPVA 64 >gnl|CDD|165142 PHA02777, PHA02777, major capsid L1 protein; Provisional. Length = 555 Score = 26.1 bits (57), Expect = 9.8 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 12/75 (16%) Query: 48 EILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILG 107 E + STP + ++E + +G QF Q + A F+ D ++VL Sbjct: 268 EAFLTSTPDPVLPIQEAIAPIRPYGRQFG-----------QVRVGDAAFL-DRAAVLFQA 315 Query: 108 DNVFYGSDISDIFHK 122 +N + +DIS +F Sbjct: 316 ENPAFDADISILFED 330 >gnl|CDD|178528 PLN02940, PLN02940, riboflavin kinase. Length = 382 Score = 26.3 bits (58), Expect = 9.9 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 9/96 (9%) Query: 99 DSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSS-NQAISI 157 +S SV++ GD V G DIF +A A+R + C V GV+ ++ + I++ Sbjct: 135 ESFSVIVGGDEVEKGKPSPDIFLEA-AKRLNVEPSNCLVIEDSLPGVMAGKAAGMEVIAV 193 Query: 158 EEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARG 193 P+ PK T +Y EV+N +++P G Sbjct: 194 ---PSIPKQ----THLYSSADEVINSLLDLQPEKWG 222 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.139 0.404 Gapped Lambda K H 0.267 0.0719 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,987,572 Number of extensions: 330535 Number of successful extensions: 639 Number of sequences better than 10.0: 1 Number of HSP's gapped: 620 Number of HSP's successfully gapped: 62 Length of query: 292 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 199 Effective length of database: 3,984,929 Effective search space: 793000871 Effective search space used: 793000871 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.8 bits)