RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780922|ref|YP_003065335.1| glucose-1-phosphate
thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(292 letters)
>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short
form. This model describes a tightly conserved but
broadly distributed subfamily (here designated as short
form) of known and putative bacterial
glucose-1-phosphate thymidylyltransferases. It is well
characterized in several species as the first of four
enzymes involved in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.
Length = 286
Score = 402 bits (1034), Expect = e-113
Identities = 167/286 (58%), Positives = 216/286 (75%)
Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61
KGI+LAGGSGTRL P+T +SKQ+LPIY+KPMIYYP+STLM AGIR+ILIISTP+D P
Sbjct: 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 60
Query: 62 KEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFH 121
++ LG G +WGV SY Q P GLAQ++I+G +FIG S L+LGDN+FYG D+SD+
Sbjct: 61 QQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGGDPSALVLGDNIFYGHDLSDLLK 120
Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181
+A AR + ATV V +P+RYGVVE DS+ +AISIEEKP PKS++AVTG+YFYD VV
Sbjct: 121 RAAARESGATVFAYQVSDPERYGVVEFDSNGRAISIEEKPAQPKSNYAVTGLYFYDNRVV 180
Query: 182 NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNIE 241
IAR ++PSARGELEITD+N YL++G L+VE L G AW D GT +SLL+ + F++ IE
Sbjct: 181 EIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQTIE 240
Query: 242 NRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVE 287
R GL VACPEEIA+R+ +I++ Q +L + YG YL +++E
Sbjct: 241 KRQGLKVACPEEIAWRNGWIDDEQLEELARPLAKNGYGQYLLRLLE 286
>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA;
Provisional.
Length = 292
Score = 334 bits (857), Expect = 2e-92
Identities = 154/286 (53%), Positives = 207/286 (72%)
Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61
KGI+LAGGSGTRL P+T +SKQ+LPIY+KPMIYYP+STLM AGIR+ILIISTP+D P
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 KEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFH 121
++ LG G +WG+ Y Q P GLAQ++I+G EFIG L+LGDN+FYG D+ +
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLPKLME 124
Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181
A + + ATV HV +P+RYGVVE D + AIS+EEKP PKS++AVTG+YFYD +VV
Sbjct: 125 AAVNKESGATVFAYHVNDPERYGVVEFDQNGTAISLEEKPLQPKSNYAVTGLYFYDNDVV 184
Query: 182 NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNIE 241
+A+N++PSARGELEITD+N Y+++G L+V + G AW D GT +SL++ + F+ IE
Sbjct: 185 EMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIE 244
Query: 242 NRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVE 287
R GL V+CPEEIA+R FI+ Q L + + YG YL ++++
Sbjct: 245 ERQGLKVSCPEEIAFRKGFIDAEQVKVLAEPLKKNAYGQYLLKMIK 290
>gnl|CDD|162250 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase,
long form. Alternate name: dTDP-D-glucose synthase.
Length = 353
Score = 196 bits (499), Expect = 7e-51
Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 2/231 (0%)
Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61
K ++LA G GTRLRPLT KQ++P+ NKP++ Y + L +AGI +I I+ P +
Sbjct: 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEI 60
Query: 62 KEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFH 121
KE +G GE++G + +YI Q P GLA + +F+GD V+ LGDN+ IS
Sbjct: 61 KEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQD-GISRFVK 119
Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181
+ A ++ V++P +GV ++ + + + EKP P S+ AV G+Y + +
Sbjct: 120 SFEEKDYDALILLTKVRDPTAFGVAVLEDGKRILKLVEKPKEPPSNLAVVGLYMFRPLIF 179
Query: 182 NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLD 232
+NI+PS RGELEITD + ++KG V + W D G PE LLD
Sbjct: 180 EAIKNIKPSWRGELEITDAIQWLIEKG-YKVGGSKVTGWWKDTGKPEDLLD 229
>gnl|CDD|162203 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase.
Built to distinquish between the highly similar genes
galU and galF.
Length = 260
Score = 88.9 bits (221), Expect = 1e-18
Identities = 68/269 (25%), Positives = 111/269 (41%), Gaps = 45/269 (16%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILII--STPRDL 58
K ++ A G GTR P T + K+MLPI +KP+I Y V ++AGI +ILI+ R +
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAI 60
Query: 59 -------PVLKEFLGSGEKWG--------------VQFSYIEQLVPAGLAQSYILGAEFI 97
L+ L EK G Y+ Q GL + + F+
Sbjct: 61 EDHFDTSYELEHQL---EKRGKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFV 117
Query: 98 GDSSSVLILGDNVF--YGSDISDIFHKARARRNSA----TVVGCHVQNPQRYGVVEVDSS 151
GD +ILGD++ + + S V V +YGV++ +
Sbjct: 118 GDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKEEV---SKYGVIDGEGV 174
Query: 152 NQAI----SIEEKPN--NPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYL 205
+ + + EKP S+ A+ G Y ++ ++ P A GE+++TD L
Sbjct: 175 EEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLL 234
Query: 206 DKG-LLAVEFLREGSAWFDAGTPESLLDT 233
+K + A +F +G +D G+ L
Sbjct: 235 EKETVYAYKF--KGKR-YDCGSKLGYLKA 260
>gnl|CDD|162696 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This
enzyme, glucose-1-phosphate adenylyltransferase, is also
called ADP-glucose pyrophosphorylase. The plant form is
an alpha2,beta2 heterodimer, allosterically regulated in
plants. Both subunits are homologous and included in
this model. In bacteria, both homomeric forms of GlgC
and more active heterodimers of GlgC and GlgD have been
described. This model describes the GlgC subunit only.
This enzyme appears in variants of glycogen synthesis
pathways that use ADP-glucose, rather than UDP-glucose
as in animals.
Length = 361
Score = 77.7 bits (192), Expect = 3e-15
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 36/207 (17%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLPVL 61
+VLAGG G+RL PLT +K +P K +I +P+S +++GIR I +++ + L
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSH-SL 59
Query: 62 KEFLGSGEKW---GVQFSYIEQLVPAGLAQSYILGAE-FIGDSSS--------------- 102
+ G W G ++ L+P AQ G + + G + +
Sbjct: 60 NRHIQRG--WDFDGFIDGFVT-LLP---AQQRESGTDWYQGTADAVYQNLDLIEDYDPEY 113
Query: 103 VLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQ--RYGVVEVDSSNQAISIEEK 160
VLIL + Y D + T+ V + R+GV++VD + + EEK
Sbjct: 114 VLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEK 173
Query: 161 PNNPKS-------SFAVTGIYFYDQEV 180
P NP S + A GIY +D++V
Sbjct: 174 PANPPSIPGMPDFALASMGIYIFDKDV 200
>gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase
subunit GalU; Provisional.
Length = 302
Score = 66.5 bits (162), Expect = 8e-12
Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 40/244 (16%)
Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61
K ++ G GTR+ P T + K+MLP+ +KP+I Y V+ + AGI EI++++ +
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69
Query: 62 KEFLGSGE---------------------KWGVQFSYIEQLVPAGLAQSYILGAEFIGDS 100
F S E V + Q + GL + + +GD
Sbjct: 70 NHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDE 129
Query: 101 SSVLILGDNVF--YGSDISDIFHKARARRNSATVVGCH------VQNPQRYGVVEVD--- 149
+IL D + Y SD+S RR T G V + YGVV+
Sbjct: 130 PVAVILPDVILDEYESDLSQDNLAEMIRRFDET--GHSQIMVEPVADVTAYGVVDCKGVE 187
Query: 150 ----SSNQAISIEEKP--NNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSY 203
S + + EKP + S+ A+ G Y ++ + P A E+++TD
Sbjct: 188 LAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDM 247
Query: 204 YLDK 207
++K
Sbjct: 248 LIEK 251
>gnl|CDD|172831 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 62.5 bits (152), Expect = 1e-10
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 15/214 (7%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
I+LA G GTR++ +DL+ K M P+ +PM+ +PV+ +AG I+++ + V +
Sbjct: 7 IILAAGKGTRMK--SDLV-KVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREH 63
Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDN-VFYGSDISDIFH 121
F G G+ V F+ E+ + G A + A G S +VLIL GD + + +
Sbjct: 64 FAGDGD---VSFALQEEQLGTGHAVACAAPA-LDGFSGTVLILCGDVPLLRAETLQGMLA 119
Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNPKSSFAV---TGIYFYD 177
RA + TV+ ++NP YG + D+ + + I EEK P+ +GIY +
Sbjct: 120 AHRATGAAVTVLTARLENPFGYGRIVRDADGRVLRIVEEKDATPEERSIREVNSGIYCVE 179
Query: 178 QEVV--NIARNIRPSARGELEITDVNSYYLDKGL 209
+ I R +A+GE +TD+ + +GL
Sbjct: 180 AAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGL 213
>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional.
Length = 297
Score = 62.2 bits (151), Expect = 1e-10
Identities = 58/237 (24%), Positives = 93/237 (39%), Gaps = 38/237 (16%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+K ++ G G + P T + K+MLPI +KPMI Y V ++ AGI+EI++++ V
Sbjct: 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63
Query: 61 LKEFLGSGE---------------------KWGVQFSYIEQLVPAGLAQSYILGAEFIGD 99
F S E GV + Q P GL S + IGD
Sbjct: 64 ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGD 123
Query: 100 SSSVLILGDNVFYGSDISDIFHK-----ARARRNSATVVGCH--VQNPQRYGVVE----V 148
+ V++L D V + + + AR + V + Y V++ +
Sbjct: 124 NPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPL 183
Query: 149 DSSNQAISIE---EKPNNPK---SSFAVTGIYFYDQEVVNIARNIRPSARGELEITD 199
D + I EKP+ P+ S G Y ++ P A G +++TD
Sbjct: 184 DREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLTD 240
>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase,
non-catalytic GalF subunit. GalF is a non-catalytic
subunit of the UTP-glucose pyrophosphorylase modulating
the enzyme activity to increase the formation of
UDP-glucose.
Length = 297
Score = 60.0 bits (145), Expect = 6e-10
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 38/237 (16%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
+K ++ G G + P T + K+MLPI +KPMI Y V ++ AGI+EI++++ V
Sbjct: 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63
Query: 61 LKEFLGSGE---------------------KWGVQFSYIEQLVPAGLAQSYILGAEFIGD 99
F S E GV + Q P GL S + +GD
Sbjct: 64 ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGD 123
Query: 100 SSSVLILGDNVFYGSDISDIFHKAR---ARRN----SATVVGCHVQNPQRYGVVE----V 148
+ V++L D + + + + AR N S + + Y V++ +
Sbjct: 124 NPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPL 183
Query: 149 DSSNQAISIE---EKPNNPK---SSFAVTGIYFYDQEVVNIARNIRPSARGELEITD 199
D + I EKP+ P+ S G Y ++ P A G +++TD
Sbjct: 184 DREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTD 240
>gnl|CDD|179099 PRK00725, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 425
Score = 57.9 bits (141), Expect = 3e-09
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 53/215 (24%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
++LAGG G+RL+ LTD +K + K +I + +S +++GIR I +++ + +++
Sbjct: 19 LILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIR 78
Query: 63 E------FLGS--GEKWGVQFSYIEQLVPA-----------GLAQS-----YILGAEFIG 98
F GE +++ L+PA G A + I+
Sbjct: 79 HIQRGWSFFREELGE-------FVD-LLPAQQRVDEENWYRGTADAVYQNLDIIRRY--- 127
Query: 99 DSSSVLIL-GDNVFYGSDISDIFHKARARRNSATV-VGCHVQNP----QRYGVVEVDSSN 152
D V+IL GD++ Y D S + A + A V C ++ P +GV+ VD ++
Sbjct: 128 DPKYVVILAGDHI-YKMDYSRML--ADHVESGADCTVAC-LEVPREEASAFGVMAVDEND 183
Query: 153 QAISIEEKPNNPKS-------SFAVTGIYFYDQEV 180
+ + EKP NP + S A GIY ++ +
Sbjct: 184 RITAFVEKPANPPAMPGDPDKSLASMGIYVFNADY 218
>gnl|CDD|172834 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 481
Score = 55.8 bits (134), Expect = 1e-08
Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 18/249 (7%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
++LA G GTR++ L K + P+ +PM+ + V D G R+I++++ V
Sbjct: 11 VILAAGQGTRMK---SALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAA 67
Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFI--GDSSSVLILGDNVFYGSD-ISDIF 120
GS GV F+ EQ + G +++ GA + GD+ +++ GD D + +
Sbjct: 68 LQGS----GVAFARQEQQL--GTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALV 121
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAV----TGIYFY 176
RA+ ++ T++ + + YG + + I E+ + + A+ +G+Y +
Sbjct: 122 ADHRAQGSAMTILTGELPDATGYGRIVRGADGAVERIVEQKDATDAEKAIGEFNSGVYVF 181
Query: 177 DQEVVNIARNI-RPSARGELEITDVNSYYLDKGLLAVEF-LREGSAWFDAGTPESLLDTA 234
D +AR I + GE +TD+ Y G F L + A L
Sbjct: 182 DARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLE 241
Query: 235 VFVRNIENR 243
+R N
Sbjct: 242 ATLRRRINE 250
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 380
Score = 54.9 bits (133), Expect = 2e-08
Identities = 71/256 (27%), Positives = 117/256 (45%), Gaps = 35/256 (13%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLP 59
M ++LAGG GTRL LT ++K +P K +I + +S ++GI + +++ + L
Sbjct: 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPL- 62
Query: 60 VLKEFLGSGEKWGV--QFSYIEQLVP----------AGLAQSYILGAEFIG--DSSSVLI 105
L +G G W + + L P G A + ++I D VLI
Sbjct: 63 ELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLI 122
Query: 106 L-GDNVFYGSDISDI--FHKARARRNSATVVGCHVQNPQ--RYGVVEVDSSNQAISIEEK 160
L GD++ Y D + +HK + T+ V + R+G++ D + + + EEK
Sbjct: 123 LSGDHI-YKMDYDKMLDYHKEKEA--DVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEK 179
Query: 161 PNNPKSSFAVTGIYFYDQEV-----VNIARNIRPSAR-GELEITDVNSYYLDKGLLAVEF 214
P NPKS+ A GIY ++ + + +N S G+ +V YL++G +
Sbjct: 180 PKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGK----NVIPLYLEEGEKLYAY 235
Query: 215 LREGSAWFDAGTPESL 230
+G W D GT ESL
Sbjct: 236 PFKGY-WKDVGTIESL 250
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 53.3 bits (129), Expect = 8e-08
Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 23/217 (10%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLPVLK 62
I+LA G GTR++ L K + + KPM+ + V ++ AGI +I ++ + +K
Sbjct: 6 IILAAGKGTRMK---SKLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEE--VK 60
Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSS-SVLIL-GDN-VFYGSDISDI 119
E LG ++ +Q EQL G + + EF+ D + L++ GD + + ++
Sbjct: 61 EVLGDRSEFALQ---EEQL---GTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNL 114
Query: 120 FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNPKSSFAV----TGIY 174
+ +AT++ +NP YG + + + + I E+K + + TG Y
Sbjct: 115 IDFHEEHKAAATILTAIAENPTGYGRIIRNENGEVEKIVEQKDATEEEK-QIKEINTGTY 173
Query: 175 FYD-QEVVNIARNIRP-SARGELEITDVNSYYLDKGL 209
+D + + + I +A+GE +TDV ++G
Sbjct: 174 CFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGE 210
>gnl|CDD|184644 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 52.5 bits (126), Expect = 1e-07
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 19/207 (9%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
M+ +VLA G GTR++ + K + I KPMI + + T + +++ +L
Sbjct: 1 MRALVLAAGKGTRMK---SKIPKVLHKISGKPMINWVIDTAKKVAQKVGVVLGHEAEL-- 55
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSD-ISD 118
+K+ L +W F EQL G A + + +FI +LIL GD + +
Sbjct: 56 VKKLL---PEWVKIFLQEEQL---GTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKR 109
Query: 119 IFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEK--PNNPKSSFAV-TGIYF 175
+ + + T++ +++P YG + D I +E+K P K + TGIY
Sbjct: 110 LIEEHNRKGADVTILVADLEDPTGYGRIIRDGGKYRI-VEDKDAPEEEKKIKEINTGIYV 168
Query: 176 YDQEVV--NIARNIRPSARGELEITDV 200
+ + + + + +A+GE +TD
Sbjct: 169 FSGDFLLEVLPKIKNENAKGEYYLTDA 195
>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase.
Members of this family are the enzyme
glucose-1-phosphate cytidylyltransferase, also called
CDP-glucose pyrophosphorylase, the product of the rfbF
gene.
Length = 254
Score = 51.3 bits (123), Expect = 3e-07
Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 50/193 (25%)
Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61
K ++LAGG GTR+ T L K M+ I KP++++ + GI + +I + V+
Sbjct: 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGY-VI 59
Query: 62 KEFLGS-----------------------GEKWGVQFSYIEQLVPAGLAQSYILG----- 93
KE+ + E W V LV G + G
Sbjct: 60 KEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRV------TLVDTG-ESTQTGGRLKRV 112
Query: 94 AEFIGDSSSVLILGDNVFYGSDISDI-----FHKARARRNSATVVGCHVQNPQRYGVVEV 148
E++ D + GD V +DI DI FH+ ++ ATV VQ P R+G +++
Sbjct: 113 REYLDDEAFCFTYGDGV---ADI-DIKALIAFHRKHGKK--ATVTA--VQPPGRFGALDL 164
Query: 149 DSSNQAISIEEKP 161
+ Q S +EKP
Sbjct: 165 E-GEQVTSFQEKP 176
>gnl|CDD|129545 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase. Members of this protein family
are 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase, the IspD protein of the
deoxyxylulose pathway of IPP biosynthesis. In about
twenty percent of bacterial genomes, this protein occurs
as IspDF, a bifunctional fusion protein.
Length = 217
Score = 51.1 bits (123), Expect = 3e-07
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDA-GIREILIISTPRDLPVLK 62
++ A G GTR + KQ L + +P++ + + + I E++++ +P D +
Sbjct: 3 VIPAAGRGTRFGSG---VPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQ 59
Query: 63 EFLGSGEKWGVQFSYIEQLVPAGL--AQSYILGAEFIGDSSSVLI 105
++L + ++V G S G + + D+ VL+
Sbjct: 60 KYLVARAVP--------KIVAGGDTRQDSVRNGLKALKDAEWVLV 96
>gnl|CDD|162697 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD
subunit. This family is GlgD, an apparent regulatory
protein that appears in an alpha2/beta2 heterotetramer
with GlgC (glucose-1-phosphate adenylyltransferase,
TIGR02091) in a subset of bacteria that use GlgC for
glycogen biosynthesis.
Length = 369
Score = 49.3 bits (118), Expect = 1e-06
Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 17/195 (8%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILIISTPRDLP 59
M I+ S L PLT + LP + +I +P+S +++AGIR + I ++
Sbjct: 3 MSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQ 62
Query: 60 VLKEFLGSGEKWGVQ------FSYIEQ----LVPAGLAQSYILGAEFIGDSSS--VLILG 107
L + LGSG +W + F + L G EF+ S+S ++L
Sbjct: 63 SLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGKRYFSQN-LEFLKRSTSEYTVVLN 121
Query: 108 DNVFYGSDISDIFHKARARRNSATVVGCHVQNPQ---RYGVVEVDSSNQAISIEEKPNNP 164
++ D+ + TVV V+ ++ D S + SI + N
Sbjct: 122 SHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPE 181
Query: 165 KSSFAVTGIYFYDQE 179
+ IY +
Sbjct: 182 EEENISLDIYIVSTD 196
>gnl|CDD|179140 PRK00844, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 407
Score = 49.4 bits (119), Expect = 1e-06
Identities = 56/215 (26%), Positives = 82/215 (38%), Gaps = 53/215 (24%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLP---IYNKPMIYYPVSTLMDAGIREILIISTPRDLP 59
IVLAGG G RL PLT +K +P Y +I + +S L+++G I
Sbjct: 8 AIVLAGGEGKRLMPLTADRAKPAVPFGGSYR--LIDFVLSNLVNSGYLRIY--------- 56
Query: 60 VLKEFLGSG------EKW---GVQFSYIEQLVPA----------GLAQSYILGAEFIGDS 100
VL ++ + W G+ +YI VPA G A + I D
Sbjct: 57 VLTQYKSHSLDRHISQTWRLSGLLGNYIT-PVPAQQRLGKRWYLGSADAIYQSLNLIEDE 115
Query: 101 SS--VLILG-DNVFYGSDISDI--FHKARARRNSATVVGCHV---QNPQRYGVVEVDSSN 152
V++ G D+V Y D + FH TV V + +GV+EVD
Sbjct: 116 DPDYVVVFGADHV-YRMDPRQMVDFHIESGA--GVTVAAIRVPREEASA-FGVIEVDPDG 171
Query: 153 QAISIEEKPNNPKS-------SFAVTGIYFYDQEV 180
+ EKP +P + A G Y + +
Sbjct: 172 RIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDA 206
>gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis, LPS
biosynthesis in species with LPS, and certain other
processes.
Length = 451
Score = 48.4 bits (116), Expect = 2e-06
Identities = 49/212 (23%), Positives = 94/212 (44%), Gaps = 17/212 (8%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
++LA G GTR++ L K + P+ KPM+ + + G ++I ++ V K
Sbjct: 4 VILAAGKGTRMK---SDLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKA 60
Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSDISDIFHK 122
W + Q G + + F+ D VL+L GD ++ + +
Sbjct: 61 LANRDVNW------VLQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLE 114
Query: 123 ARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI-EEKPNNP--KSSFAV-TGIYFYDQ 178
A R+N T++ + +P YG + ++ + +I E+K N K+ + TG+Y +D
Sbjct: 115 A-HRQNGITLLTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINTGVYVFDG 173
Query: 179 EVVN--IARNIRPSARGELEITDVNSYYLDKG 208
+ + + +A+GE +TDV + + G
Sbjct: 174 AALKRWLPKLSNNNAQGEYYLTDVIALAVADG 205
>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 429
Score = 44.1 bits (105), Expect = 4e-05
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNK-PMIYYPVSTLMDAGIREILII 52
I+L GG+GTRL PLT L +K +P+ K +I P+S +++GI +I ++
Sbjct: 6 AIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVL 56
>gnl|CDD|178905 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase; Reviewed.
Length = 227
Score = 42.0 bits (100), Expect = 2e-04
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 4 IVLAGGSGTRL---RPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLP 59
I+ A G G+R+ RP KQ LP+ KP++ + + + I EI+++ P D P
Sbjct: 7 IIPAAGKGSRMGADRP------KQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRP 60
Query: 60 VLKE 63
E
Sbjct: 61 DFAE 64
>gnl|CDD|177884 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase.
Length = 436
Score = 40.2 bits (95), Expect = 6e-04
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPI---YNKPMIYYPVSTLMDAGIREILII 52
I+L GG+GTRL PLT +K +PI Y +I P+S +++GI +I ++
Sbjct: 6 AIILGGGAGTRLFPLTKRRAKPAVPIGGNYR--LIDIPMSNCINSGINKIYVL 56
Score = 29.8 bits (68), Expect = 0.93
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 103 VLIL-GDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQ--RYGVVEVDSSNQAISIEE 159
VLIL GD++ Y D D K R T+ V + +G++++D + + I E
Sbjct: 125 VLILSGDHL-YRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSE 183
Query: 160 KP 161
KP
Sbjct: 184 KP 185
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 446
Score = 39.8 bits (94), Expect = 8e-04
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63
I+LA G GTR++ L K + P+ +PM+ + ++ G + ++ +
Sbjct: 9 IILAAGEGTRMK---SSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVV-VGPGAEAVAA 64
Query: 64 FLGSGEKWGVQFSYIEQL-----VPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSDIS 117
F E+L V A A+ + A GD VL+L GD I+
Sbjct: 65 AAAKIAPDAEIFVQKERLGTAHAVLA--AREAL--AGGYGD---VLVLYGDTPL----IT 113
Query: 118 -DIFHKARARR---NSATVVGCHVQNPQRYG-VVEVDSSNQAISIEEK 160
+ + R R V+G +P YG ++ AI +EEK
Sbjct: 114 AETLARLRERLADGADVVVLGFRAADPTGYGRLIVKGGRLVAI-VEEK 160
>gnl|CDD|129546 TIGR00454, TIGR00454, conserved hypothetical protein TIGR00454. At
this time this gene appears to be present only in
Archea.
Length = 183
Score = 38.4 bits (89), Expect = 0.002
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
M +++AGG GTRL + K ++ + + +I + +S L+ + + I+I ++P P
Sbjct: 1 MDALIMAGGKGTRL----GGVEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSP-HTPK 55
Query: 61 LKEFLGSGEKWGVQFS---YIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDIS 117
+E++ S K S YIE L + F+ SS ++ L + I
Sbjct: 56 TEEYINSAYKDYKNASGKGYIEDLNECIGELYF--SEPFLVVSSDLINLRSKII--DSIV 111
Query: 118 DIFHKARA 125
D ++ +A
Sbjct: 112 DYYYCIKA 119
>gnl|CDD|181813 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase/2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase protein; Provisional.
Length = 378
Score = 38.3 bits (90), Expect = 0.002
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLK 62
+++A G TR KQ L I KP+ + + L A +EI+++ P D+ +K
Sbjct: 9 VIVAAGRSTRFSAEVK---KQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMK 65
Query: 63 EFLG 66
+ L
Sbjct: 66 KALP 69
>gnl|CDD|163213 TIGR03310, matur_ygfJ, molybdenum hydroxylase accessory protein,
YgfJ family. Members of this protein family are
probable accessory proteins for the biosynthesis of
enzymes related to xanthine dehydrogenase. Comparative
genomics suggests a role in the maturation of
selenium-dependent molybdenum hydroxylases, although a
tenuous alternative hypothesis is a role for this
protein (with a requirement for SelD, the selenium donor
protein in the selenocysteine and selenouridine
biosynthesis pathways) metabolizing a
selenium-containing substrate such as selenate.
Length = 188
Score = 37.7 bits (88), Expect = 0.003
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
I+LA G +R+ +K +LP K ++ + V + E++++ +
Sbjct: 2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADEL-- 54
Query: 63 EFLGSGEKWGVQFSYIEQLVPA-GLAQSYILGAEFIGDSSSVLI-LGDNVFYGSDISDIF 120
+ + A G + S LG E S L LGD F DI +
Sbjct: 55 -VALLANHSNIT--LVHNPQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLL 111
Query: 121 HKARARRNSATVV 133
+A A +N VV
Sbjct: 112 LEAFALKNDEIVV 124
>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 482
Score = 34.5 bits (80), Expect = 0.034
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 82 VPAGLAQSYILGAEFIGDSSSVLIL-GDN-VFYGSDISDIFHKARARRNSATVVGCHVQN 139
V L L A+F G +V++ GD + G ++D+ A N+ TV+ + +
Sbjct: 87 VQCALEA---LPADFDG---TVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDD 140
Query: 140 PQRYGVVEVDSSNQAISI-EEKPNNPKSSFAV----TGIYFYDQEVVN--IARNIRPSAR 192
P YG + D + +I E+K P S A+ +G+Y +D V+ +AR +A+
Sbjct: 141 PTGYGRILRDQDGEVTAIVEQKDATP-SQRAIREVNSGVYAFDAAVLRSALARLSSDNAQ 199
Query: 193 GELEITDV 200
GEL +TDV
Sbjct: 200 GELYLTDV 207
>gnl|CDD|162382 TIGR01479, GMP_PMI, mannose-1-phosphate
guanylyltransferase/mannose-6-phosphate isomerase.
This enzyme is known to be bifunctional, as both
mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and
mannose-1-phosphate guanylyltransferase (EC 2.7.7.22)
in Pseudomonas aeruginosa, Xanthomonas campestris, and
Gluconacetobacter xylinus. The literature on the enzyme
from E. coli attributes mannose-6-phosphate isomerase
activity to an adjacent gene, but the present sequence
has not been shown to lack the activity. The PMI domain
is C-terminal.
Length = 468
Score = 33.8 bits (78), Expect = 0.046
Identities = 15/26 (57%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 4 IVLAGGSGTRLRPLT-DLLSKQMLPI 28
++LAGGSGTRL PL+ +L KQ L +
Sbjct: 4 VILAGGSGTRLWPLSRELYPKQFLAL 29
>gnl|CDD|178976 PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis
protein MobA; Reviewed.
Length = 193
Score = 30.9 bits (71), Expect = 0.35
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 1 MKGIVLAGGSGTRL--RPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDL 58
+ G++LAGG R+ K + + KP+I + + L A + ++I+ R+L
Sbjct: 4 ITGVILAGGRSRRMGGVD------KGLQELNGKPLIQHVIERL--APQVDEIVINANRNL 55
Query: 59 PVLKEF 64
F
Sbjct: 56 ARYAAF 61
>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 450
Score = 29.9 bits (68), Expect = 0.85
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 96 FIGDSSSVLILGDNV--FYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQ 153
F GD +L+L +V + + + R+ T++ + NP+ YG V D +N
Sbjct: 93 FEGD---LLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNL 149
Query: 154 AISI-EEKPNNP---KSSFAVTGIY-FYDQEVVNIARNIRP-SARGELEITDVNSYYLDK 207
I E++ P +++ GIY F + + + + + E +TD S LD
Sbjct: 150 VEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVS-LLDP 208
Query: 208 GLLAVE 213
++AVE
Sbjct: 209 -VMAVE 213
>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 29.6 bits (67), Expect = 0.85
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREI-LIISTPRDLP 59
M ++LA G GTR+ +D L K + + KPM+ + + + G + + L+ DL
Sbjct: 6 MSVVILAAGKGTRM--YSD-LPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDL- 61
Query: 60 VLKEFLGSGE-KWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GD 108
LK+ L W +Q EQL G + A F D +L+L GD
Sbjct: 62 -LKQTLADEPLNWVLQ---AEQL---GTGHAMQQAAPFFADDEDILMLYGD 105
>gnl|CDD|184645 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 430
Score = 29.6 bits (67), Expect = 0.90
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYY 36
I+LA G GTR++ K + I KPM++Y
Sbjct: 6 IILAAGKGTRMKSSL---PKVLHTICGKPMLFY 35
>gnl|CDD|185357 PRK15460, cpsB, mannose-1-phosphate guanyltransferase;
Provisional.
Length = 478
Score = 29.6 bits (66), Expect = 1.0
Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 4 IVLAGGSGTRLRPLTDLL-SKQML 26
+V+AGGSG+RL PL+ +L KQ L
Sbjct: 9 VVMAGGSGSRLWPLSRVLYPKQFL 32
>gnl|CDD|163336 TIGR03584, PseF, pseudaminic acid CMP-transferase. The sequences
in this family include the pfam02348
(cytidyltransferase) domain and are homologous to the
NeuA protein responsible for the transfer of CMP to
neuraminic acid. According to, this gene is responsible
for the transfer of CMP to the structurally related
sugar, pseudaminic acid which is observed as a
component of sugar modifications of flagellin in
Campylobacter species. This gene is commonly observed
in apparent operons with other genes responsible for
the biosynthesis of pseudaminic acid and as a component
of flagellar and exopolysaccharide biosynthesis loci.
Length = 222
Score = 29.2 bits (66), Expect = 1.4
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIIST 54
I+ A G R+ K + P KPMI Y + +++G+ + +++ST
Sbjct: 3 IIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVST 47
>gnl|CDD|179687 PRK03968, PRK03968, DNA primase large subunit; Validated.
Length = 399
Score = 28.9 bits (65), Expect = 1.6
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 251 PEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI 292
+ Y D + F+ L+ SPYG VVE +I
Sbjct: 58 HSDYEYLFDLL---SFYALLGALAFSPYGREAELVVESNGKI 96
>gnl|CDD|152575 pfam12140, DUF3588, Protein of unknown function (DUF3588). This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 129 and 866 amino
acids in length, and the family is found in association
with pfam02820. The exact function of this family is not
known.
Length = 118
Score = 28.9 bits (65), Expect = 1.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 260 FINESQFFQLIDHFGNSPYGLYLRQVVE 287
++++ + QL DHFG P + L++VV+
Sbjct: 18 YLDKKKVQQLPDHFGPGPVNVVLKEVVQ 45
>gnl|CDD|184401 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 28.1 bits (64), Expect = 2.6
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 2 KGIVLAGGSGTRLRPLTDLLSKQM-LPIY 29
+GIVL GG G LR L LLS++ LP++
Sbjct: 278 RGIVLTGG-GALLRGLDKLLSEETGLPVH 305
>gnl|CDD|184686 PRK14454, PRK14454, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 342
Score = 27.3 bits (61), Expect = 5.1
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 18 TDLLSKQMLPIYNKPMIYYPVSTLMDA 44
D L K+M+PI NK Y + L++A
Sbjct: 218 NDELRKKMMPIANK----YSIEELIEA 240
>gnl|CDD|183106 PRK11375, PRK11375, allantoin permease; Provisional.
Length = 484
Score = 27.1 bits (60), Expect = 5.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 76 SYIEQLV--PAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDI 119
S+ Q + GL +YIL A +S +I G ++ YG+D ++
Sbjct: 256 SFRAQALGQTLGLVVAYILFAV----ASVCIIAGASIHYGADTWNV 297
>gnl|CDD|178329 PLN02728, PLN02728, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase.
Length = 252
Score = 27.0 bits (60), Expect = 6.0
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMD-AGIREILIISTP 55
I+LAGG G R+ + KQ LP+ +P+ Y + T ++EI+++ P
Sbjct: 28 ILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDP 77
>gnl|CDD|183141 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 26.8 bits (60), Expect = 6.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 105 ILGDNVFYGSDISDIFHKARARRNSAT 131
LG F +I D+FHK R N A
Sbjct: 69 RLGKEGFLPDEILDVFHKLRKIGNKAV 95
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
A close homolog is found in the Archaeon
Methanobacterium thermoautotrophicum, and a more distant
homolog in Archaeoglobus fulgidus. The family is related
to cell division protein FtsA and heat shock protein
DnaK.
Length = 333
Score = 26.6 bits (59), Expect = 7.1
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 2 KGIVLAGGSGTRLRPLTDLLSKQM-LPIY 29
+GIVL GG G LR L LLSK+ LP+
Sbjct: 281 RGIVLTGG-GALLRNLDKLLSKETGLPVI 308
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 26.6 bits (59), Expect = 8.5
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 26 LPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKW 71
LP+Y+ + +M G ILI S PRDLP + + LG KW
Sbjct: 258 LPLYHIYAFTFHCMAMMLIGNHNILI-SNPRDLPAMVKELG---KW 299
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 26.3 bits (58), Expect = 8.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 197 ITDVNSYYLDKGLLAVEFLREGSAWFDAGTPE 228
IT + Y+ + LAVE +R G A+ D TPE
Sbjct: 333 ITYTSDYFQELYELAVELIRRGHAYVDHQTPE 364
>gnl|CDD|180277 PRK05826, PRK05826, pyruvate kinase; Provisional.
Length = 465
Score = 26.3 bits (59), Expect = 9.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 225 GTPESLLDTAVFVRNIENRLGLYVA 249
G+ E A VR I +LG VA
Sbjct: 40 GSHEEHGKRAALVREIAAKLGRPVA 64
>gnl|CDD|165142 PHA02777, PHA02777, major capsid L1 protein; Provisional.
Length = 555
Score = 26.1 bits (57), Expect = 9.8
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 48 EILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILG 107
E + STP + ++E + +G QF Q + A F+ D ++VL
Sbjct: 268 EAFLTSTPDPVLPIQEAIAPIRPYGRQFG-----------QVRVGDAAFL-DRAAVLFQA 315
Query: 108 DNVFYGSDISDIFHK 122
+N + +DIS +F
Sbjct: 316 ENPAFDADISILFED 330
>gnl|CDD|178528 PLN02940, PLN02940, riboflavin kinase.
Length = 382
Score = 26.3 bits (58), Expect = 9.9
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 99 DSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSS-NQAISI 157
+S SV++ GD V G DIF +A A+R + C V GV+ ++ + I++
Sbjct: 135 ESFSVIVGGDEVEKGKPSPDIFLEA-AKRLNVEPSNCLVIEDSLPGVMAGKAAGMEVIAV 193
Query: 158 EEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARG 193
P+ PK T +Y EV+N +++P G
Sbjct: 194 ---PSIPKQ----THLYSSADEVINSLLDLQPEKWG 222
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.139 0.404
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,987,572
Number of extensions: 330535
Number of successful extensions: 639
Number of sequences better than 10.0: 1
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 62
Length of query: 292
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 199
Effective length of database: 3,984,929
Effective search space: 793000871
Effective search space used: 793000871
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)