RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] (292 letters) >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296 Score = 402 bits (1035), Expect = e-113 Identities = 146/291 (50%), Positives = 198/291 (68%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 MKGI+LAGGSGTRL P+T +SKQ+LPIY+KPMIYYP+S LM AGIREILII+TP D Sbjct: 4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 63 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 + LG G ++G+Q Y EQ P GLAQ++I+G F+ S L+LGDN+F+G S Sbjct: 64 FQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSCLVLGDNIFFGQGFSPKL 123 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 AR ATV G V +P+R+GVVE D + +AIS+EEKP PKS++AVTG+YFYD +V Sbjct: 124 RHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEKPKQPKSNWAVTGLYFYDSKV 183 Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240 V A+ ++PS RGELEIT +N YL+ G L VE L G AW D GT +SL++ + FV+ + Sbjct: 184 VEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQTV 243 Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKR 291 E R G +AC EEIA+R+ ++++ + + YG YL +++ + R Sbjct: 244 EKRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKTGYGQYLLELLRARPR 294 >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold, structural genomics, PSI; HET: TYD; 1.70A {Methanothermobacterthermautotrophicus} SCOP: c.68.1.6 Length = 295 Score = 352 bits (904), Expect = 6e-98 Identities = 155/289 (53%), Positives = 203/289 (70%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 MKGIVLAGGSGTRL P+T +SKQ+LPIY+KPMIYYP+S LM AGIR+ILIISTPRDLP+ Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 ++ LG G ++GV+FSY Q P G+A ++I+G +FIGDS L+LGDNVFYG S+I Sbjct: 64 YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGDSKVALVLGDNVFYGHRFSEIL 123 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 +A + + A + G +V++P+ +GVVE DS + ISIEEKP+ PKS++ V G+YFYD +V Sbjct: 124 RRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRPKSNYVVPGLYFYDNQV 183 Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240 V IAR I PS RGELEIT VN YL G L VE + G AW D GT + LL+ + F+ I Sbjct: 184 VEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIETI 243 Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKK 289 + R G Y+AC EEIAY + +I ++ + + YG YLR + E Sbjct: 244 QKRQGFYIACLEEIAYNNGWITREDVLEMAEKLEKTDYGKYLRDLAEGN 292 >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 1mp5_A* 1mp3_A* 1mp4_A* Length = 293 Score = 286 bits (732), Expect = 5e-78 Identities = 158/289 (54%), Positives = 210/289 (72%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 KGI+LAGGSGTRL P T +SKQ+LP+Y+KPMIYYP+STLM AGIREILIISTP+D P Sbjct: 3 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 62 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 ++ LG G WG+ Y Q P GLAQ++++G FIG+ S L+LGDN++YG D ++ Sbjct: 63 FQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNLYYGHDFHELL 122 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 A R+ A+V HV +P+RYGVVE D +AIS+EEKP PKS++AVTG+YFYDQ+V Sbjct: 123 GSASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQV 182 Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240 V+IAR+++PS RGELEITDVN YL++G L+VE + G AW D GT +SLL+ F+ + Sbjct: 183 VDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIATL 242 Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKK 289 ENR GL VACPEEIAYR +I+ +Q +L + YG YL++++ + Sbjct: 243 ENRQGLKVACPEEIAYRQKWIDAAQLEKLAAPLAKNGYGQYLKRLLTET 291 >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Length = 281 Score = 206 bits (524), Expect = 7e-54 Identities = 62/276 (22%), Positives = 113/276 (40%), Gaps = 38/276 (13%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 K + A G GTR P+T + K+MLPI +KP+I Y V M+AG + I++ + Sbjct: 3 KKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSL 62 Query: 61 LKEF----------LGSGEKWG----------VQFSYIEQLVPAGLAQSYILGAEFIGDS 100 F G+ ++ FSY+ Q GL + + G IG+ Sbjct: 63 EDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNE 122 Query: 101 SSVLILGDNVFYGSDISDIFHK-----ARARRNSATVVGCHVQNPQRY----GVVEVDSS 151 +IL D++ D + + + + + + ++ +Y G + Sbjct: 123 PFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEEGV 182 Query: 152 NQAISIEEKPN--NPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKG- 208 + + EKPN + S+ AV G Y ++ I +P E++ITD + Sbjct: 183 YEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAKRKR 242 Query: 209 LLAVEFLREGSAWFDAGTPESLLDTAVFV---RNIE 241 ++A +F +G +D G+ E ++ + R +E Sbjct: 243 IIAYQF--KG-KRYDCGSVEGYIEASNAYYKKRLLE 275 >3hl3_A Glucose-1-phosphate thymidylyltransferase; IDP01254, sucrose, structural genomics, center for structural genomics of infectious diseases; HET: SUC; 2.76A {Bacillus anthracis} Length = 269 Score = 205 bits (522), Expect = 1e-53 Identities = 101/241 (41%), Positives = 149/241 (61%), Gaps = 4/241 (1%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 MKGI+LAGG+G+RL P+T + +K +LP+ PMIY+ V L I +I+II+ + Sbjct: 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGD 84 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 + FLGSG+++GV F+Y Q G+AQ+ L +F+G+ V+ILGDN + DI Sbjct: 85 VVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFVGNDRMVVILGDN-IFSDDIRPYV 143 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 + ++ A V+ V +P+R+GV + + + I IEEKP PKSS+AVTGIY YD +V Sbjct: 144 EEFTNQKEGAKVLLQSVDDPERFGVANIQ-NRKIIEIEEKPKEPKSSYAVTGIYLYDSKV 202 Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240 + + ++PSARGELEITD+N++YL +G+L + W DAGT SL R+I Sbjct: 203 FSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSG--WWTDAGTHVSLQRANALARDI 260 Query: 241 E 241 Sbjct: 261 N 261 >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 Score = 158 bits (401), Expect = 9e-40 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 15/236 (6%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 MK +LA GSG RL P+T K +PI +KP+I Y + L GIR+I +I + ++ Sbjct: 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKEY 60 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 ++ L + S + Q + IL A+F + LI+ ++F+ ++ Sbjct: 61 FEKKLK-------EISIVTQKDDIKGTGAAILSAKFNDE---ALIIYGDLFF---SNEKE 107 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 ++G V NP+ YGV+ +D+ N I EKP P S+ GIY + ++ Sbjct: 108 ICNIITLKENAIIGVKVSNPKDYGVLVLDNQNNLSKIIEKPEIPPSNLINAGIYKLNSDI 167 Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVF 236 I S RGELE+TD + V+ + W D G P +++D + Sbjct: 168 FTYLDKISISERGELELTDAINLMAKDH--RVKVIEYEGYWMDIGKPWNIIDVNKW 221 >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Length = 297 Score = 155 bits (391), Expect = 1e-38 Identities = 54/266 (20%), Positives = 97/266 (36%), Gaps = 32/266 (12%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIIS------- 53 K + G GTR P T + K+MLP+ ++P+I Y V ++AGI +++ ++ Sbjct: 15 RKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSAL 74 Query: 54 ------------TPRDLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSS 101 T + L +Y+ Q P GL + + +GD Sbjct: 75 EDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGDEP 134 Query: 102 SVLILGDNVFYGSDIS-DIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQ------- 153 ++L D+ +G A + + V + Q + + Q Sbjct: 135 FAVLLPDDFMFGQPGCLKQMVDAYNKVGGNLICAEEVPDDQTHRYGIITPGTQDGVLTEV 194 Query: 154 -AISIEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKG-LLA 211 + + P S+ +V G Y EV+ I N A GE+++TD + Sbjct: 195 KGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQRMIGDQPFHG 254 Query: 212 VEFLREGSAWFDAGTPESLLDTAVFV 237 V F +G+ +D G + + V Sbjct: 255 VTF--QGT-RYDCGDKAGFIQANLAV 277 >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Length = 302 Score = 154 bits (389), Expect = 2e-38 Identities = 55/294 (18%), Positives = 102/294 (34%), Gaps = 50/294 (17%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 K ++ G GTR+ P T + K+MLP+ +KP+I Y V+ + AGI EI++++ + Sbjct: 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSI 68 Query: 61 LKEFLGSGE---------------------KWGVQFSYIEQLVPAGLAQSYILGAEFIGD 99 F S E V + Q + GL + + +GD Sbjct: 69 ENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD 128 Query: 100 SSSVLILGDNVFYGSDISDIFH------KARARRNSATVVGCHVQNPQRYGVVEVDSSNQ 153 +IL D + + + + ++ V + YGVV+ Sbjct: 129 EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDCKGVEL 188 Query: 154 AISIEEK---------PNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYY 204 A + S+ A+ G Y ++ + P A E+++TD Sbjct: 189 APGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDML 248 Query: 205 LDKGLLAVEFLREGSAWFDAGTPESLLDTAV------------FVRNIENRLGL 246 ++K + ++ D G + V F +E +G+ Sbjct: 249 IEKETVEAYHMKG--KSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWLEEEMGI 300 >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 323 Score = 145 bits (367), Expect = 8e-36 Identities = 57/267 (21%), Positives = 99/267 (37%), Gaps = 33/267 (12%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 +V A G GTR P T + K++LP+ + P I + + G + II+ P V Sbjct: 13 KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGV 72 Query: 61 LKEFLGSGE--------------------KWGVQFSYIEQLVPAGLAQSYILGAEFIGD- 99 L F S E ++ + Q P GL + L + D Sbjct: 73 LAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDD 132 Query: 100 ---SSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAIS 156 + +L + G +A + V + +YG+ E+++ + Sbjct: 133 EDVVAVMLPDDLVLPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADTKDSD 192 Query: 157 IEEK--------PNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKG 208 +++ + S A TG Y D+++ + R I P A GEL++TD +D+G Sbjct: 193 VKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEG 252 Query: 209 LLAVEFLREGSAWFDAGTPESLLDTAV 235 + +G D G P + V Sbjct: 253 HPVHIVIHQGK-RHDLGNPGGYIPACV 278 >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 Score = 143 bits (362), Expect = 3e-35 Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 36/256 (14%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 +K I+LA G GTRLRPLT+ K ++ + KP+I Y + L + GI +I+II Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQF 85 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 EK+GV+ + ++ S L E + +S + DN + + + Sbjct: 86 DYLK----EKYGVRLVFNDKYADYNNFYSLYLVKEELANSYVIDA--DNYLFKNMFRNDL 139 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 + +T + ++ + + I K+ ++G+ F+D Sbjct: 140 TR-------STYFSVYREDCTNEWFLVYGDDYKVQDIIVD---SKAGRILSGVSFWDAPT 189 Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240 + A E D+ ++D +++ + V+V + Sbjct: 190 AEKIVSFIDKAYVSGEFVDL--------------------YWDNMVKDNIKELDVYVEEL 229 Query: 241 ENRLGLYVACPEEIAY 256 E + ++ Sbjct: 230 EGNSIYEIDSVQDYRK 245 >2x65_A Mannose-1-phosphate guanylyltransferase; GDP-mannose biosynthesis, nucleotidyltransferas; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* Length = 336 Score = 140 bits (353), Expect = 4e-34 Identities = 38/268 (14%), Positives = 81/268 (30%), Gaps = 36/268 (13%) Query: 1 MKGIVLAGGSGTRLRPL-TDLLSKQMLPIY-NKPMIYYPVSTL-MDAGIREILIISTPRD 57 MK ++LAGGSG R PL T KQ L ++ NK ++ + + + +++++++ Sbjct: 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDY 61 Query: 58 LPVLKEFLGSGEKWGVQFSY--IEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD 115 + K+ L + + E + + + D + Sbjct: 62 VERTKKELPELPDENIIAEPMKKNTAPACFIGTKLADDDEPVLVLPADHRIPDTKKFWKT 121 Query: 116 ISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAIS------IEEKPNNPKSSFA 169 + T + YG +E+ + E+ F Sbjct: 122 VKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFV 181 Query: 170 VTGIYFYDQEVVNIA--------RNIRPSARGELEITD-----------------VNSYY 204 +G + ++ + + PS L+ D Y Sbjct: 182 ESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYA 241 Query: 205 LDKGLLAVEFLREGSAWFDAGTPESLLD 232 + + V ++ W D G S+ + Sbjct: 242 VMEKSKKVRVVKADFEWSDLGNWSSVRE 269 >3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann-like fold, LEFT-handed-beta-helix, trimer, cell shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A 3d98_A* 3dj4_A 3foq_A 2qkx_A* Length = 495 Score = 121 bits (303), Expect = 2e-28 Identities = 28/179 (15%), Positives = 65/179 (36%), Gaps = 7/179 (3%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 +VLA G GTR+R T K + + + M+ + + + + ++++ + Sbjct: 10 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 66 Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIG----DSSSVLILGDNVFYGSDISDI 119 + G Q P G + + G + + V + ++D+ Sbjct: 67 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 126 Query: 120 FHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQ 178 RA + TV+ + +P YG + ++ ++I E+ + S + + Sbjct: 127 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVY 185 >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 Score = 112 bits (281), Expect = 7e-26 Identities = 58/309 (18%), Positives = 105/309 (33%), Gaps = 45/309 (14%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPI-YNKPMIYYPVSTLMDAGIREILIISTPRDLP 59 + GI+L GG+GTRL PLT +K +P+ N +I PVS +++ I +I +++ Sbjct: 21 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSAS 80 Query: 60 VLKEF-------LGSGEKWGVQFSYIEQLVPA----------GLAQSYILGAEFIGDSSS 102 + + +G + G Q P + Q L E Sbjct: 81 LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVL--E 138 Query: 103 VLILGDNVFYGSDISDIFHKARARRNSATV--VGCHVQNPQRYGVVEVDSSNQAISIEEK 160 LIL + Y D R TV + + +G++++D + I EK Sbjct: 139 YLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEK 198 Query: 161 PNNPK---------------------SSFAVTGIYFYDQEVVNIARNIRPSARGELEITD 199 P + A GIY ++V+ + ++ Sbjct: 199 PQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFP-GANDFGSE 257 Query: 200 VNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNIENRLGLYVACPEEIAYRHD 259 V G+ +L +G W D GT E+ + + + + I + Sbjct: 258 VIPGATSLGMRVQAYLYDGY-WEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPR 316 Query: 260 FINESQFFQ 268 ++ S+ Sbjct: 317 YLPPSKMLD 325 >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* Length = 456 Score = 110 bits (276), Expect = 3e-25 Identities = 42/214 (19%), Positives = 83/214 (38%), Gaps = 14/214 (6%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 + ++LA G GTR+ K + I KPM+ + + T G I +I + Sbjct: 6 LSAVILAAGKGTRMYSDL---PKVLHTIAGKPMVKHVIDTAHQLGSENIHLI-YGHGGDL 61 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 ++ L + Q +++ Q G A + A F D+ ++++L + + + Sbjct: 62 MRTHLANE-----QVNWVLQTEQLGTAHAVQQAAPFFKDNENIVVLYGDAPLITKETLEK 116 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPN---NPKSSFAVTGIYFYD 177 N ++ ++ NP YG + ++ N +E+K TG+ D Sbjct: 117 LIEAKPENGIALLTVNLDNPTGYGRIIRENGNVVAIVEQKDANAEQLNIKEVNTGVMVSD 176 Query: 178 QEVV--NIARNIRPSARGELEITDVNSYYLDKGL 209 +AR +A+GE +TD+ + Sbjct: 177 GASFKKWLARVGNNNAQGEYYLTDLIALANQDNC 210 >1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel beta-helix, transferase; HET: COA UD1; 2.10A {Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A* 2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A* Length = 456 Score = 107 bits (266), Expect = 4e-24 Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 14/214 (6%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 M ++LA G GTR+ K + + K M+ + + + G + ++ + Sbjct: 6 MSVVILAAGKGTRMYSDL---PKVLHTLAGKAMVQHVIDAANELGAAHVHLV-YGHGGDL 61 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 LK+ L +++ Q G + A F D +L+L +V S + Sbjct: 62 LKQALKDDN-----LNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQR 116 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPN---NPKSSFAVTGIYFYD 177 + + ++ + +P YG + ++ +E K + TGI + Sbjct: 117 LRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIAN 176 Query: 178 QEVV--NIARNIRPSARGELEITDVNSYYLDKGL 209 + +A+ +A+GE ITD+ + +G Sbjct: 177 GADMKRWLAKLTNNNAQGEYYITDIIALAYQEGR 210 >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase; acetyltransferase, bifunctional, crystallography, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 1g97_A* 1g95_A* Length = 468 Score = 103 bits (257), Expect = 4e-23 Identities = 37/215 (17%), Positives = 79/215 (36%), Gaps = 19/215 (8%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 I+LA G GTR++ K + + M+ + ++ + + + +++E Sbjct: 15 IILAAGKGTRMKSDL---PKVLHKVAGISMLEHVFRSVGAIQPEKTVTV-VGHKAELVEE 70 Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS---VLILGDNVFYGSDISDIF 120 L ++ Q G + ++ + S V+ + G + ++ Sbjct: 71 VLAGQ------TEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLI 124 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI----EEKPNNPKSSFAVTGIYFY 176 +N AT++ NP YG + + + + + I + + TG Y + Sbjct: 125 DFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVF 184 Query: 177 DQEV--VNIARNIRPSARGELEITDVNSYYLDKGL 209 D E + +A+GE ITDV + + G Sbjct: 185 DNERLFEALKNINTNNAQGEYYITDVIGIFRETGE 219 >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 Score = 98.2 bits (243), Expect = 2e-21 Identities = 45/252 (17%), Positives = 86/252 (34%), Gaps = 33/252 (13%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 K ++LAGG GTRL T + K M+ I KP++++ + GI++ II V Sbjct: 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDF-IICCGYKGYV 61 Query: 61 LKEFLGSGEKWGVQF---------------------SYIEQLVPAGLAQSYILGAEFIGD 99 +KE+ + + ++ + AE++ D Sbjct: 62 IKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD 121 Query: 100 SSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEE 159 + L + DI +A AT+ P R+G +++ + + Sbjct: 122 DEAFLFTYGDGVADLDIKATIDFHKAHGKKATL--TATFPPGRFGALDIQ--AGQVRSFQ 177 Query: 160 KPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGS 219 + + G + + V+++ N + E +T L+A E G Sbjct: 178 EKPKGDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQ----QGELMAFEH--PG- 230 Query: 220 AWFDAGTPESLL 231 W T + Sbjct: 231 FWQPMDTLRDKV 242 >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 Score = 95.8 bits (237), Expect = 9e-21 Identities = 43/224 (19%), Positives = 72/224 (32%), Gaps = 18/224 (8%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKP-MIYYPVSTLMDAGIREILIISTPRDLP 59 VLAGG G+RL+ LTD +K + K +I + +S +++GIR I + T Sbjct: 13 AMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVA-TQYKAH 71 Query: 60 VLKEFLGSGEKWG------------VQFSYIEQLVPAGLAQSYILGAEFIGDSSS--VLI 105 L L G + E G A + + I + ++I Sbjct: 72 SLIRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVI 131 Query: 106 LGDNVFYGSDISDIFHKARARRNS--ATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNN 163 L + Y D + + + +GV+ V+ ++ I EKP + Sbjct: 132 LAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPAD 191 Query: 164 PKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDK 207 P G + A +S K Sbjct: 192 PPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGK 235 >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori 26695} Length = 308 Score = 87.7 bits (216), Expect = 3e-18 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 9/172 (5%) Query: 1 MKGIVLAGGSGTRLRPL-TDLLSKQMLPIYNKPMIYYPVSTL-MDAGIREILIISTPRDL 58 +K I+L+GGSG RL PL L KQ L +++ ++ + +A + + +I Sbjct: 5 IKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFE--LSFKRNASLVDETLIVCNEKH 62 Query: 59 PVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDIS- 117 L E ++ + + A + L A +++ + + Sbjct: 63 YFLALEEIKNEIKNKSVGFLLESLSKNTANAIALSALMSDKEDLLIVTPSDHLIKDLQAY 122 Query: 118 ----DIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPK 165 + T + +G +E + EKP+ K Sbjct: 123 ENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESPNGLDVKRFIEKPSLDK 174 >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236 Score = 69.7 bits (169), Expect = 6e-13 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 6/230 (2%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 + +LAGG+GTR+ L KQ L + ++P++ + + + E +++ D Sbjct: 3 IYAGILAGGTGTRMG--ISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVS 60 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 E L + I A S E I D+ L D V + Sbjct: 61 HAEDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAI-DAYRPLTPEDIVVTHDSVRPFI 119 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 + N + V + S I + PN T F ++ Sbjct: 120 TLRMIQDNIQLAQNHDAVDTVVEAVDTIVESTNGQFITDIPNRAHLYQGQTPQTFRCKDF 179 Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESL 230 +++ ++ S + +TD ++ KG V + + T L Sbjct: 180 MDLYGSL--SDEEKEILTDACKIFVIKG-KDVALAKGEYSNLKITTVTDL 226 >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.90A {Thermus thermophilus HB8} SCOP: c.68.1.19 Length = 232 Score = 64.9 bits (157), Expect = 2e-11 Identities = 35/247 (14%), Positives = 69/247 (27%), Gaps = 32/247 (12%) Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDL 58 M+ IVLAGG SK ++P +PM+ + + L AG+ + + P + Sbjct: 1 MRPSAIVLAGGKEAWAERFGVG-SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV 59 Query: 59 PVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISD 118 P L ++ E + V + Sbjct: 60 PAPALTLPDRGGL---------------LENLEQALEHVEGRVLVATGDIPHLTEEAVRF 104 Query: 119 IFHKARARRNSATVVGCHV---QNPQRYGVV----EVDSSNQAISIEEKPNNPKSSFAVT 171 + KA +V + P+ E + + + +K K+ Sbjct: 105 VLDKAPEAALVYPIVPKEAVEARFPRTKRTYARLREGTFTGGNLLLLDKSLFRKALPLAR 164 Query: 172 GIYFYDQEVVNIARNIRPSA-----RGELEITDVNSY--YLDKGLLAVEFLREGSAWFDA 224 + + + +AR + G L + +V + + D Sbjct: 165 RVVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDV 224 Query: 225 GTPESLL 231 E L+ Sbjct: 225 DREEDLV 231 >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246 Score = 59.9 bits (144), Expect = 7e-10 Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 19/213 (8%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLP-- 59 +LAGG GTR+ ++ + KQ LP+ KP+I + V + +ILI S + Sbjct: 6 AQILAGGKGTRMGNVS--MPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHA 63 Query: 60 -VLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSD-I 116 + S ++ V ++ ++ + D ++ F I Sbjct: 64 EDNIKKYISDDRIVVIEGGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRII 123 Query: 117 SDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFY 176 + A TV+ +VE + I + P T F Sbjct: 124 EENIDAALETGAVDTVI------EALDTIVESSNHEV---ITDIPVRDHMYQGQTPQSFN 174 Query: 177 DQEVVNIARNIRPSARGELEITDVNSYYLDKGL 209 ++V N +N+ + + +TD L G Sbjct: 175 MKKVFNHYQNL--TPEKKQILTDACKICLLAGD 205 >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A Length = 197 Score = 57.3 bits (138), Expect = 4e-09 Identities = 33/186 (17%), Positives = 56/186 (30%), Gaps = 19/186 (10%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 + G+VLA G RL KQ+LP + ++ + AG ++++ V Sbjct: 6 ITGVVLAAGRSNRLGT-----PKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAV 60 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSS--VLILGDNVFYGSD-IS 117 G V G A S + + ++ VL+LGD + Sbjct: 61 RAAMALDGTDVVVVEDVER-----GCAASLRVALARVHPRATGIVLMLGDQPQVAPATLR 115 Query: 118 DIFHKARARRNSATVVGCHVQNPQRYG------VVEVDSSNQAISIEEKPNNPKSSFAVT 171 I A V +P + + + + +P AV Sbjct: 116 RIIDVGPATEIMVCRYADGVGHPFWFSRTVFGELARLHGDKGVWKLVHSGRHPVRELAVD 175 Query: 172 GIYFYD 177 G D Sbjct: 176 GCVPLD 181 >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A Length = 228 Score = 56.1 bits (134), Expect = 9e-09 Identities = 20/229 (8%), Positives = 63/229 (27%), Gaps = 20/229 (8%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62 ++LA + L K + + ++ + ++ + + + +I+ST + + Sbjct: 7 AVILARQNSKGLP------LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTD-GGLIAE 59 Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLIL-GDNVFYGSDISDIFH 121 E G + ++ + + + ++ +S +V +L + Sbjct: 60 EAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAF 119 Query: 122 KARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVV 181 + +VV + ++ + + + Q Sbjct: 120 SLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSDLE---------QPRQQLPQ 170 Query: 182 NIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESL 230 N + N +++ ++ D T L Sbjct: 171 AFRPNGAIYINDTASLIANNCFFIAP---TKLYIMSHQDSIDIDTELDL 216 >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate guanyltransferase, structural genomics; 2.20A {Thermus thermophilus HB8} SCOP: b.81.4.1 c.68.1.20 Length = 337 Score = 56.1 bits (134), Expect = 9e-09 Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 14/183 (7%) Query: 1 MK--GIVLAGGSGTRLRPL-TDLLSKQMLPIY-NKPMIYYPVSTLMDAGIREILIISTPR 56 MK +V+AGG G RL PL + K LP++ K ++ + L E +++ R Sbjct: 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60 Query: 57 DLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDI 116 D +E + G++ A + + +L+L + + G D Sbjct: 61 D----QEAVARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDE 116 Query: 117 SDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFY 176 + A + G V G+ + I P + Sbjct: 117 AYREALATMLEAAEE--GFVVA----LGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKP 170 Query: 177 DQE 179 Sbjct: 171 SYA 173 >3okr_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TB structural genomics consortium, TBSGC, tryptophan synthes 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase; 2.40A {Mycobacterium tuberculosis} Length = 231 Score = 55.5 bits (133), Expect = 1e-08 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 14/197 (7%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62 IV A GSG RL + K + + +I V L+D+G+ + ++++ P D Sbjct: 10 AIVPAAGSGERLAVG---VPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEA 66 Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHK 122 + V +L + V + + ++ + Sbjct: 67 RQILGHRAMIVAGGSNRT--DTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEA 124 Query: 123 ARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVN 182 R + V P + VD++ + E+ AV + +++ Sbjct: 125 LRDGYAAVVPV-----LPLSDTIKAVDANGVVLGTPER----AGLRAVQTPQGFTTDLLL 175 Query: 183 IARNIRPSARGELEITD 199 + E TD Sbjct: 176 RSYQRGSLDLPAAEYTD 192 >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Length = 201 Score = 51.4 bits (122), Expect = 2e-07 Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 49/230 (21%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 + G+VLAGG R+ + K +L + KP+ + LM ++ + +++ Sbjct: 7 ITGVVLAGGKARRMGG----VDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIY- 61 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120 + G++ G + + + D + D Sbjct: 62 --------QASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPD--LAA 111 Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180 R+++ V + + + + + + E Sbjct: 112 RLNHQRKDAPVVW--VHDGERDHPTIALVNRAIEPLLLEYL------------------- 150 Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESL 230 GE + G AV+F A+ + TPE L Sbjct: 151 ----------QAGERRVMVF---MRLAGGHAVDFSDHKDAFVNVNTPEEL 187 >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199 Score = 50.8 bits (121), Expect = 3e-07 Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 9/145 (6%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60 + G+VLA G RL KQ+LP+ + ++ ++ ++++ V Sbjct: 6 VTGVVLAAGYSRRLGT-----PKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEV 60 Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD-ISDI 119 L++ G + + L VL+LGD + ++ + Sbjct: 61 LEKVELDGLDIVLVDDAGLG---CSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASL 117 Query: 120 FHKARARRNSATVVGCHVQNPQRYG 144 R + + +P Sbjct: 118 IAGGRGATIAVCEYANGIGHPFWVS 142 >1w77_A 2C-methyl-D-erythritol 4-phosphate cytidylyltransferase; plantherbicide, non-mevalonate pathway, isoprenoid; HET: C5P; 2.00A {Arabidopsis thaliana} SCOP: c.68.1.13 Length = 228 Score = 50.4 bits (119), Expect = 4e-07 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRD 57 I+LAGG G R++ KQ +P+ +P+ Y T + +++ Sbjct: 8 ILLAGGQGKRMKMSM---PKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPF 58 >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TM1393, structural genomics, JCSG, joint center for structural genomics, PSI; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234 Score = 49.3 bits (116), Expect = 1e-06 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 1 MK-GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRD 57 M I+LA G G R+ + + KQ L I + + YP+ST + + + ++I T R+ Sbjct: 13 MNVAILLAAGKGERMS---ENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRRE 67 >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197 Score = 47.9 bits (113), Expect = 3e-06 Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 20/149 (13%) Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDL 58 M I+LA G G R K + I N P+I + + +I+I+ + Sbjct: 1 MNIGVIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIY--GDLEKIIIVGKYVNE 53 Query: 59 PVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLI-LGDNVFYGSDIS 117 + Q G++ S LG F D +VL+ LGD F + Sbjct: 54 ML--------PLLMDQIVIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTKE-- 103 Query: 118 DIFHKARARRNSATVVGCHVQNPQRYGVV 146 D+ + + V + + V+ Sbjct: 104 DVNKIINTFKPNCKAVIPTHKGERGNPVL 132 >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP), isoprenoid biosynthesys; HET: CTP; 1.50A {Escherichia coli K12} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 1h3m_A Length = 236 Score = 46.8 bits (110), Expect = 5e-06 Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 16/206 (7%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 +V A G G R++ KQ L I N+ ++ + V L+ + ++I+ + Sbjct: 11 VVPAAGFGRRMQ---TECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ 67 Query: 64 FLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKA 123 A S + G + GD+ VL+ D D+ Sbjct: 68 L-----PLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVH-DAARPCLHQDDLARLL 121 Query: 124 RARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVNI 183 S T E + A +++ A+T +F + + + Sbjct: 122 ALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLW----HALTPQFFPRELLHDC 177 Query: 184 ARNIRPSARGELEITDVNSYYLDKGL 209 ITD S G Sbjct: 178 LTRA---LNEGATITDEASALEYCGF 200 >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231 Score = 45.4 bits (106), Expect = 1e-05 Identities = 15/150 (10%), Positives = 43/150 (28%), Gaps = 8/150 (5%) Query: 1 MK----GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMD-AGIREILIISTP 55 +K ++ A G G R KQ + I +K ++ + + + +++ +P Sbjct: 3 LKRKNIALIPAAGIGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSP 59 Query: 56 RDLPVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD 115 D K + + + + +L ++ ++L+ Sbjct: 60 EDTFADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPS 119 Query: 116 ISDIFHKARARRNSATVVGCHVQNPQRYGV 145 + +A + + Sbjct: 120 EALARLIEQAGNAAEGGILAVPVADTLKRA 149 >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371 Score = 45.2 bits (106), Expect = 2e-05 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKE 63 I+LA G+ TR + KQ L + N P+ Y L + +++++ ++ +K+ Sbjct: 7 IMLAAGNSTRFN---TKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKK 62 Query: 64 FL 65 F Sbjct: 63 FT 64 >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Length = 236 Score = 45.0 bits (105), Expect = 2e-05 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRD 57 M+ ++ A G+G RL K L + + ++ + ++ D E+L+ P Sbjct: 24 MEVSVLIPAAGNGLRLGRG----PKAFLQVGGRTLLEWTLAAFRD--AAEVLVALPPGA 76 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.5 bits (105), Expect = 3e-05 Identities = 55/344 (15%), Positives = 99/344 (28%), Gaps = 129/344 (37%) Query: 8 GGSGTRLRPLTDLLSKQMLPIYNKPMIYYP-VSTLMDAGIREIL--IISTPRDLPVLKEF 64 GG G +L +Y Y+ V L+ E L +I T D ++ Sbjct: 161 GGQGNTDDYFEELRD-----LYQ---TYHVLVGDLIKF-SAETLSELIRTTLDA---EKV 208 Query: 65 LGSG---EKW--------GVQFSYIEQLVPA-------GLAQ--SY-----ILG---AEF 96 G +W + L+ G+ Q Y +LG E Sbjct: 209 FTQGLNILEWLENPSNTPDKDY-----LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263 Query: 97 I-------GDS----SSVLILGDNVFYGSDISDIFHKARARRNSATVV------GCHVQN 139 G S ++V I +D + F + + G Sbjct: 264 RSYLKGATGHSQGLVTAVAIAE------TDSWESFFV-----SVRKAITVLFFIGVRCY- 311 Query: 140 PQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELE--I 197 + Y + S S+E P +++ + + +++ + Sbjct: 312 -EAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-----------------TQEQVQDYV 353 Query: 198 TDVNSYYL--DKGL-LAVEFLREGSAWFD-AGTPESLLDTAVFVRNIENRLGLYVACPEE 253 NS+ L K + ++ L G+ +G P+SL + +R + GL + Sbjct: 354 NKTNSH-LPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS---R 406 Query: 254 IAYRH---DFINESQF------FQLIDHFGNSPYGLYLRQVVEK 288 I + F N +F F H S L + Sbjct: 407 IPFSERKLKFSN--RFLPVASPF----H---SH---LLVPASDL 438 Score = 42.6 bits (100), Expect = 9e-05 Identities = 51/327 (15%), Positives = 86/327 (26%), Gaps = 124/327 (37%) Query: 10 SGTRLRPLTDLLS----KQMLPIYNKPMIYYPV-STLMDAGIREILIISTPRDLPVLKEF 64 RPLT LS + +L + P + + S L + + + P + + Sbjct: 2 DAYSTRPLT--LSHGSLEHVLLV---PTASFFIASQLQEQFNKI---LPEPTEGFAADD- 52 Query: 65 LGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFI---------GDSSSVL--ILGD---NV 110 E PA L ++ ++ G VL L + Sbjct: 53 --------------EPTTPAELVGKFL---GYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95 Query: 111 FYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVE-----VDSSNQAISIEEKP---- 161 G+DI H A+ + +++ + + + Sbjct: 96 LEGNDI----HALAAKLLQENDTTL----VKTKELIKNYITARIMAKRPFDKKSNSALFR 147 Query: 162 --NNPKSS-FAVTG------IYF------YDQEVVNIARNIRPSAR--GEL--EITDVNS 202 + A+ G YF Y V + I+ SA EL D Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207 Query: 203 YYLDKGLLAVEFLREGSAWFDAGTPES------LLDTAVFVRNIENRLGL------YVAC 250 + +GL L W + P + LL + I G+ V Sbjct: 208 VFT-QGL---NIL----EWLE--NPSNTPDKDYLLSIPISCPLI----GVIQLAHYVVTA 253 Query: 251 ------PEEIAYR------HDFINESQ 265 P E+ H SQ Sbjct: 254 KLLGFTPGELRSYLKGATGH-----SQ 275 >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} Length = 208 Score = 41.5 bits (97), Expect = 2e-04 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 7/42 (16%) Query: 1 MKGIVLAGGSGTRL-RPLTDLLSKQMLPIYNKPMIYYPVSTL 41 MK VL GG G R+ K + + K +I + + Sbjct: 1 MKVAVLVGGVGRRIGME------KTEVMLCGKKLIEWVLEKY 36 >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} Length = 252 Score = 38.3 bits (88), Expect = 0.002 Identities = 24/138 (17%), Positives = 38/138 (27%), Gaps = 12/138 (8%) Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDL 58 M ++ A TRL P K + I KPMI + M AG ++I + + Sbjct: 1 MSFTVVIPARYQSTRL-P-----GKPLADIGGKPMIQWVYEQAMQAGADRVIIATDDERV 54 Query: 59 PVLKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISD 118 + G V + + D V + GD I Sbjct: 55 EQAVQAFG----GVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIR 110 Query: 119 IFHKARARRNSATVVGCH 136 A ++ Sbjct: 111 QVADNLAACSAPMATLAV 128 >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* Length = 262 Score = 37.0 bits (84), Expect = 0.005 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 9/56 (16%) Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIIST 54 M I+ A + +RL K + I KPMI + + +G + II+T Sbjct: 1 MSFTVIIPARFASSRLP------GKPLADIKGKPMIQHVFEKALQSGASRV-IIAT 49 >2e8b_A Probable molybdopterin-guanine dinucleotide biosynthesis protein A; putative protein, molybdenum cofactor, structural genomics, NPPSFA; 1.61A {Aquifex aeolicus VF5} Length = 201 Score = 36.4 bits (83), Expect = 0.008 Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 7/54 (12%) Query: 3 GIVLAGGSGTRL-RPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTP 55 VLAGG R K + I K +I T ++ Sbjct: 17 CYVLAGGKSKRFGED------KLLYEIKGKKVIERVYETAKSVFKEVYIVAKDR 64 >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, cytoplasm, lipopolysaccharide biosynthesis, magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A* Length = 264 Score = 30.9 bits (68), Expect = 0.33 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 8/57 (14%) Query: 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTP 55 M I+ A + TRL K ++ I KPMI + + ++G I++ + Sbjct: 17 MSFVVIIPARYASTRLP------GKPLVDINGKPMIVHVLERARESGAERIIVATDH 67 >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 Length = 229 Score = 30.3 bits (67), Expect = 0.49 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTP 55 +VLA G + K + + P+I + + +DAG+ + + +ST Sbjct: 6 ALVLARGGSKGIP------LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTD 52 >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Length = 245 Score = 29.9 bits (66), Expect = 0.75 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 6/51 (11%) Query: 4 IVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIIST 54 ++ A +RL K +L I KPMI + + + ++T Sbjct: 6 VIPARYGSSRLP------GKPLLDIVGKPMIQHVYERALQVAGVAEVWVAT 50 >2ftz_A Geranyltranstransferase; TM0161, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima MSB8} Length = 284 Score = 29.2 bits (64), Expect = 1.0 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLM 42 M GG R+RPL L + L + + ++ V+ + Sbjct: 38 MLYSATVGGX--RIRPLLVLTLGEDLGVEEEXLLDVAVAVEL 77 >1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP} SCOP: c.1.8.4 PDB: 1gon_A Length = 479 Score = 27.4 bits (60), Expect = 4.0 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 15/51 (29%) Query: 141 QRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSA 191 +R+G V VD PK+S +Y EV + P+A Sbjct: 444 KRFGAVYVDYPTGT-------RIPKASA-----RWY-AEV--ARTGVLPTA 479 >1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3 Length = 90 Score = 27.4 bits (61), Expect = 4.2 Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 5/40 (12%) Query: 252 EEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKR 291 IA + Q L +H Y + + +R Sbjct: 27 SAIAEELGYDLLGQIGSLENH-----YLFKHKSHPRRSRR 61 >2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii OT3} Length = 222 Score = 27.1 bits (60), Expect = 4.3 Identities = 10/42 (23%), Positives = 21/42 (50%) Query: 251 PEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI 292 ++ + + ++ +QF+ L+ SPYG+ L V + I Sbjct: 51 IDKFLDQDNVMDLAQFYALLGALSYSPYGIELELVKKANLII 92 >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* Length = 344 Score = 27.0 bits (59), Expect = 5.1 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%) Query: 2 KGIVLAGGSGTRLRPLTDLLSK 23 +GI L GG + LR L LL K Sbjct: 279 RGIFLTGGG-SLLRGLDTLLQK 299 >3gzs_A Uncharacterized SUSD superfamily protein; structural genomics, joint center for structural genomics, JCSG; 2.09A {Bacteroides fragilis nctc 9343} Length = 515 Score = 26.9 bits (58), Expect = 6.3 Identities = 18/141 (12%), Positives = 36/141 (25%), Gaps = 19/141 (13%) Query: 157 IEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLA---VE 213 I P P Y + N+ +++ P VN Y + L Sbjct: 5 INRNPLLPTKEDEKMDGVIYGAYLPNLEKSVIPIGTASESTEPVNRYQIGVNLAGDAWAG 64 Query: 214 FLREGSAWFDAGTPESLLD----------TAVFVRNIENRLGLYVACPEEIAYRHDFINE 263 ++ F+ + + + + + +E + Sbjct: 65 YMSPRDNKFNGSKNFTNYFMYENWVNYVYSFMVTDVYSPWMQIKRISQDEGTRNDEIYAL 124 Query: 264 SQ------FFQLIDHFGNSPY 278 +Q + D FG PY Sbjct: 125 AQIIKIAALHRTTDMFGPIPY 145 >3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding protein; 3.10A {Sulfolobus solfataricus} Length = 255 Score = 26.3 bits (58), Expect = 7.9 Identities = 5/20 (25%), Positives = 10/20 (50%) Query: 270 IDHFGNSPYGLYLRQVVEKK 289 +D F G L + ++K+ Sbjct: 218 VDAFSGRFIGDQLNEQLKKR 237 >3id5_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransferase, RNA-binding, rRNA processing, transferase; HET: SAM; 4.01A {Sulfolobus solfataricus} Length = 388 Score = 26.4 bits (58), Expect = 8.5 Identities = 5/20 (25%), Positives = 10/20 (50%) Query: 270 IDHFGNSPYGLYLRQVVEKK 289 +D F G L + ++K+ Sbjct: 351 VDAFSGRFIGDQLNEQLKKR 370 >2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8 Length = 178 Score = 26.2 bits (58), Expect = 8.9 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 15/89 (16%) Query: 112 YGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVT 171 YG + + + VVG P+ Y E+ N +I P S A Sbjct: 84 YGIPLPQKLEEIKRADKVLVVVGAEKVPPEVY---ELCDLNISIG-----TQPHSEVAAL 135 Query: 172 GIYF-------YDQEVVNIARNIRPSARG 193 ++ +D + + PS RG Sbjct: 136 AVFLDRVLGKVFDISFDDAKIKVIPSERG 164 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.139 0.404 Gapped Lambda K H 0.267 0.0534 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,591,673 Number of extensions: 122244 Number of successful extensions: 441 Number of sequences better than 10.0: 1 Number of HSP's gapped: 391 Number of HSP's successfully gapped: 58 Length of query: 292 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 200 Effective length of database: 3,462,782 Effective search space: 692556400 Effective search space used: 692556400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.8 bits)