BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780922|ref|YP_003065335.1| glucose-1-phosphate
thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(292 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 292
Score = 598 bits (1541), Expect = e-173, Method: Compositional matrix adjust.
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV
Sbjct: 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPV 60
Query: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF
Sbjct: 61 LKEFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIF 120
Query: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV
Sbjct: 121 HKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEV 180
Query: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI
Sbjct: 181 VNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNI 240
Query: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI 292
ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI
Sbjct: 241 ENRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVEKKKRI 292
>gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 299
Score = 51.6 bits (122), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 101/235 (42%), Gaps = 40/235 (17%)
Query: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61
K + G G R P++ ++ K+ML I ++P+I Y + ++AG+ + + + T R ++
Sbjct: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFV-TGRGKGLI 67
Query: 62 KEFLG---------SGEKWGVQFSYIEQLVPA-------------GLAQSYILGAEFIGD 99
K++ + + + + +P+ GL + IGD
Sbjct: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127
Query: 100 SSSVLILGDNVF-------YGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSS- 151
+ L+L D + +++ ++ K A N V C Q +YG+V+V +
Sbjct: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKEGA--NILAVSECDPQLSCKYGMVQVGKAI 185
Query: 152 -NQAISIEEKPNNPKSS-----FAVTGIYFYDQEVVNIARNIRPS-ARGELEITD 199
+Q I + P SS F + G Y ++ +I + + + +GE+++TD
Sbjct: 186 DHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240
>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 442
Score = 39.3 bits (90), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 44/199 (22%)
Query: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
IVLA G G R++ + SK + I KPMI + + T+ AGI + ++
Sbjct: 7 AIVLAAGRGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVALV---------- 53
Query: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD------- 115
LG G + + ++ P L+ Y + G + +VL D + G D
Sbjct: 54 --LGYGAEEITRINF-----PPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYG 106
Query: 116 -----ISDIFHKAR---ARRNSATVVGCHVQNPQRYG--------VVEVDSSNQAISIEE 159
S KA A+ S VVG + NP+ YG ++ + N A E
Sbjct: 107 DVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEER 166
Query: 160 KPNNPKSSF-AVTGIYFYD 177
K + S A+ G+Y D
Sbjct: 167 KIHYCNSGLMAIDGLYIMD 185
>gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter
asiaticus str. psy62]
Length = 300
Score = 29.6 bits (65), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 25/168 (14%)
Query: 116 ISDIFHKARARRNSATVVG---CHVQNPQRYGVVEVDSSNQAISIEE---KPNNPKSSFA 169
+S+ + K R R A ++G + +P++ + S ISI P+NP++
Sbjct: 1 MSNNYSKRRLGRGLAALIGEVNQSIDSPEKKTET-IPESQDCISIHSIVPNPHNPRN--- 56
Query: 170 VTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPES 229
YF + + ++ ++I+ + G ++ V + +D GL + G F A S
Sbjct: 57 ----YFESEGLEDLCQSIK--SHGIIQPLIVRA--IDNGLYKIIA---GERRFRAAKMAS 105
Query: 230 LLDTAVFVRNIENRLGLYVACPEEIAYRHDF--INES-QFFQLIDHFG 274
L + V +RN++N+ L +A E + R D + E+ + QLI +G
Sbjct: 106 LSEVPVIIRNVDNKSSLEIAIVENVQ-RKDLNPLEEALGYEQLISEYG 152
>gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 230
Score = 26.2 bits (56), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 244 LGLYVACPEEIAYRHDFINESQFFQL-IDHFGNSPYGLYLRQ 284
LGL V+ P IAY + FI +S+ F + ++ F N + RQ
Sbjct: 184 LGLCVSIPSSIAY-NKFIEDSKKFAMQMEGFANEFSAILSRQ 224
>gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 578
Score = 25.8 bits (55), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 210 LAVEFLREGSAWFDAGTPESLLDTAVFVRNIENRLGLYVACPEEIAYRHDFINESQFFQL 269
L+++F R + A P S+ D VFV + R+ Y++ E +R + I QL
Sbjct: 422 LSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRRIK-YISGSTEQGFRFNEIT-----QL 475
Query: 270 IDHFGN 275
DH N
Sbjct: 476 ADHLFN 481
>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
str. psy62]
Length = 686
Score = 24.3 bits (51), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 17/74 (22%)
Query: 12 TRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGS---- 67
+R + L ++L+ Q+ T MDA R +L + +DL LK+ S
Sbjct: 615 SRFKGLGEMLASQL------------KETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
Query: 68 -GEKWGVQFSYIEQ 80
G K +F +I++
Sbjct: 663 MGTKADERFKFIQE 676
>gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 254
Score = 23.1 bits (48), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 248 VACPEEIAYRHDFINESQFFQLIDHFGNSPY 278
V+C EEIA + + ++I+H N PY
Sbjct: 119 VSCAEEIAETDEKFDIILNMEVIEHVDNIPY 149
>gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 23.1 bits (48), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 44 AGIREILIISTPRDLPVLKE 63
AG+ E L+I+ P D P+ +
Sbjct: 96 AGVMEFLLINHPLDCPICDQ 115
>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 652
Score = 23.1 bits (48), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 104 LILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQ 153
++LG+ FYG I A R + P R+ V+S ++
Sbjct: 467 VLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSE 516
>gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal
peptide protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 288
Score = 23.1 bits (48), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 74 QFSYIEQLVPAGLAQSYILGAEF 96
QF Y LV G+ S+ LGA F
Sbjct: 171 QFFYALDLVKKGVISSHALGATF 193
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,852
Number of Sequences: 1233
Number of extensions: 7922
Number of successful extensions: 27
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 14
length of query: 292
length of database: 328,796
effective HSP length: 73
effective length of query: 219
effective length of database: 238,787
effective search space: 52294353
effective search space used: 52294353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)