Query gi|254780923|ref|YP_003065336.1| hypothetical protein CLIBASIA_04110 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 365
No_of_seqs 111 out of 158
Neff 5.0
Searched_HMMs 33803
Date Wed Jun 1 19:26:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780923.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3ckj_A Putative uncharacteriz 94.3 0.18 5.3E-06 28.6 6.8 178 106-309 38-228 (329)
2 >1omz_A Alpha-1,4-N-acetylhexo 92.9 0.53 1.6E-05 25.8 7.2 123 107-255 19-145 (293)
3 >2z86_A Chondroitin synthase; 87.0 2.1 6.3E-05 22.2 12.4 120 111-255 30-155 (295)
4 >1qg8_A Protein (spore coat po 83.4 3.2 9.4E-05 21.1 6.5 162 116-312 1-174 (255)
5 >3f1y_A Mannosyl-3-phosphoglyc 83.3 3.2 9.4E-05 21.1 8.6 178 106-309 84-273 (387)
6 >2ffu_A Ppgalnact-2, polypepti 72.0 6.9 0.0002 19.1 11.9 179 107-311 57-253 (370)
7 >2d7i_A Polypeptide N-acetylga 65.1 9.7 0.00029 18.2 10.6 128 101-254 41-178 (360)
8 >1pjc_A Protein (L-alanine deh 49.3 18 0.00053 16.6 4.0 47 288-336 79-131 (169)
9 >1fo8_A Alpha-1,3-mannosyl-gly 49.2 18 0.00053 16.6 10.2 187 116-356 2-208 (230)
10 >3cnf_A VP1; cytoplasmic polyh 37.9 18 0.00052 16.6 1.8 34 306-339 40-73 (103)
11 >3h14_A Aminotransferase, clas 36.9 19 0.00057 16.4 1.8 105 215-342 41-145 (156)
12 >3brq_A HTH-type transcription 35.0 30 0.00089 15.2 6.0 74 106-181 10-92 (144)
13 >1yt5_A Inorganic polyphosphat 28.6 39 0.0011 14.6 6.3 59 117-178 2-74 (78)
14 >2dri_A D-ribose-binding prote 27.9 40 0.0012 14.5 6.0 82 115-201 1-89 (139)
15 >2d1c_A Isocitrate dehydrogena 26.3 43 0.0013 14.3 3.3 80 142-244 20-101 (126)
16 >1vkr_A Mannitol-specific PTS 24.0 47 0.0014 14.1 4.3 33 138-174 54-86 (125)
17 >1s1m_A CTP synthase; CTP synt 20.6 55 0.0016 13.6 3.2 52 156-208 122-179 (269)
18 >2czr_A TBP-interacting protei 20.5 55 0.0016 13.6 3.2 16 162-177 53-68 (82)
No 1
>>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A (A:)
Probab=94.33 E-value=0.18 Score=28.60 Aligned_cols=178 Identities=13% Similarity=-0.000 Sum_probs=93.2
Q ss_pred CCCCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHHCC--CCCCEEEEECC--C-HHHHHHHHHHHCCCCEEEE---ECCC
Q ss_conf 787543122475599999436-777999999998189--98318998086--3-1799999985258837999---4566
Q gi|254780923|r 106 MGKVMQIAIKAKIAIVVHLYY-IDLWIEIANLLSNLS--ISFDLHVTLVT--E-SASIKSEILKIFPAARIHI---MENH 176 (365)
Q Consensus 106 ~~~~~~~~~k~KIAV~lHlyY-~DLl~Ei~~~L~~ip--~~~DL~ITt~~--~-~~~~~~~i~~~~~~~~I~v---v~NR 176 (365)
.++.+.....++|+|++=.|= .+.+.++++.+.+-. .++.++|.-+. + ..++.++.....+...+.+ -.|.
T Consensus 38 ~~~~~~~~~~p~vsIiIp~yN~~~~l~~~l~sl~~q~~~~~~eiivvDd~S~D~t~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (329)
T 3ckj_A 38 VAELEAAKAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRP 117 (329)
T ss_dssp HHHHHHTTTTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCCC
T ss_pred HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC
T ss_conf 45565333799799998268788899999999985157999689999896963489999872322235541577244300
Q ss_pred CCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 73178999750644526868899965686767777733447899999987559999999999998628964898156654
Q gi|254780923|r 177 GRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYR 256 (365)
Q Consensus 177 GRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~ 256 (365)
|.- +..-.++ ...+.|+|+.+.+=- .+-+++.++.++..++.+|..+++++....
T Consensus 118 g~~-~a~n~~~---~~a~~~~i~~~D~Dd---------------------~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~ 172 (329)
T 3ckj_A 118 GKG-EALWRSL---AASRGDIVVFVDSDL---------------------INPHPMFVPWLVGPLLTGDGVHLVKSFYRR 172 (329)
T ss_dssp SHH-HHHHHHH---HHCCCSEEEECCTTE---------------------ESCCTTHHHHHHHHHHSCSSCCEEEEEEEC
T ss_pred HHH-HHHHHHH---HHCCCCCEEEECCCC---------------------CCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 499-9999999---964746069973788---------------------889999999999999739865422013300
Q ss_pred CCCCCCCC--CCCCHHHH--HHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHH
Q ss_conf 43333234--45410228--9999999984899873326637701477329888878
Q gi|254780923|r 257 YPNKYCDY--TCSLGKNR--EMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPI 309 (365)
Q Consensus 257 ~~~~~~~~--~~~wg~N~--~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL 309 (365)
........ ...+..+. ........... .........+.|+.+-.|.+++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~ 228 (329)
T 3ckj_A 173 PLNVGDAGGGAGATGGGRVTELVARPLLAAL-RPELGCILQPLGGEYAATRELLTSV 228 (329)
T ss_dssp C---------------CHHHHHTHHHHHHHH-CGGGGGCSCTTCSCEEEEHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCEEECCCCCEEEEHHHHHHC
T ss_conf 2555544554332222188999999999986-4220330015764478749999768
No 2
>>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} (A:)
Probab=92.93 E-value=0.53 Score=25.76 Aligned_cols=123 Identities=11% Similarity=0.009 Sum_probs=80.9
Q ss_pred CCCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHHCCCCCCEEEEECCCH---HHHHHHHHHHCCCCEEEEECCCCCHHHH
Q ss_conf 87543122475599999436-7779999999981899831899808631---7999999852588379994566731789
Q gi|254780923|r 107 GKVMQIAIKAKIAIVVHLYY-IDLWIEIANLLSNLSISFDLHVTLVTES---ASIKSEILKIFPAARIHIMENHGRDVLP 182 (365)
Q Consensus 107 ~~~~~~~~k~KIAV~lHlyY-~DLl~Ei~~~L~~ip~~~DL~ITt~~~~---~~~~~~i~~~~~~~~I~vv~NRGRDI~P 182 (365)
.+......+++|+|++=.|= .+.++++++.+.+-..+.+.+|-.+... .+...+.....+...+..-+|.|--.+-
T Consensus 19 ~~~~~~~~~p~isViIp~yN~~~~l~~~l~sl~~q~~~~~~iiv~d~ss~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 98 (293)
T 1omz_A 19 IKSPSKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNR 98 (293)
T ss_dssp -------CTTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGG
T ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHH
T ss_conf 66867688898799996689879999999999819999809999899999878999997478987799962788847763
Q ss_pred HHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9975064452686889996568676777773344789999998755999999999999862896489815665
Q gi|254780923|r 183 FLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAY 255 (365)
Q Consensus 183 fLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~ 255 (365)
-.+ ....+.|+|+.+.+-= .+ +++.++.+++.++++|..+++++...
T Consensus 99 -n~~---~~~a~~~~i~~lD~D~---------------------~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 145 (293)
T 1omz_A 99 -LQV---FPEVETNAVLMVDDDT---------------------LI-SAQDLVFAFSIWQQFPDQIIGFVPRK 145 (293)
T ss_dssp -GSC---CTTCCSSEEEEECTTE---------------------EE-CHHHHHHHHHHHTTSTTSEEESCEEE
T ss_pred -CHH---HHHCCCCEEEEECCCC---------------------CC-CHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf -440---7656847799986864---------------------21-37899999999997887679643210
No 3
>>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* (A:59-353)
Probab=87.04 E-value=2.1 Score=22.15 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=79.7
Q ss_pred CCCCCCCEEEEEEEC-CHHHHHHHHHHHHHCC--CCCCEEEEEC--CC-HHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
Q ss_conf 312247559999943-6777999999998189--9831899808--63-1799999985258837999456673178999
Q gi|254780923|r 111 QIAIKAKIAIVVHLY-YIDLWIEIANLLSNLS--ISFDLHVTLV--TE-SASIKSEILKIFPAARIHIMENHGRDVLPFL 184 (365)
Q Consensus 111 ~~~~k~KIAV~lHly-Y~DLl~Ei~~~L~~ip--~~~DL~ITt~--~~-~~~~~~~i~~~~~~~~I~vv~NRGRDI~PfL 184 (365)
+....++|+|++=.| -++.+.++++.+.+-. ..+.++|.-+ ++ ..++.++.....+.+.+...++.+.=-...-
T Consensus 30 ~~~~~p~isViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivvDd~S~D~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 109 (295)
T 2z86_A 30 KQLIIDGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAVRN 109 (295)
T ss_dssp --CCCCCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHH
T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 66868998999963799899999999997169999859999989898218999997513699699996899857899999
Q ss_pred HHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 75064452686889996568676777773344789999998755999999999999862896489815665
Q gi|254780923|r 185 ILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAY 255 (365)
Q Consensus 185 v~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~ 255 (365)
.+.. ..+.|+|+.+.+=-- + .++.+..++..+..+|..+++++...
T Consensus 110 ~~~~---~a~~d~i~~lD~D~~---------------------~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (295)
T 2z86_A 110 LGLR---AAKYNYVAILDCDMA---------------------P-NPLWVQSYMELLAVDDNVALIGPRKY 155 (295)
T ss_dssp HHHH---HCCSSEEEEECTTEE---------------------E-CTTHHHHHHHHHHHCTTEEEECCEEE
T ss_pred HHHH---HCCCCEEEEECCCCC---------------------C-CHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 9999---759998999889724---------------------4-81399999999984998599987774
No 4
>>1qg8_A Protein (spore coat polysaccharide biosynthesis protein SPSA); glycosyltransferase; 1.50A {Bacillus subtilis} (A:)
Probab=83.36 E-value=3.2 Score=21.10 Aligned_cols=162 Identities=14% Similarity=0.153 Sum_probs=84.7
Q ss_pred CCEEEEEEEC-CHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHH---HCCCCE-----EEEE-CCCCCHHH-HH
Q ss_conf 7559999943-6777999999998189-9831899808631799999985---258837-----9994-56673178-99
Q gi|254780923|r 116 AKIAIVVHLY-YIDLWIEIANLLSNLS-ISFDLHVTLVTESASIKSEILK---IFPAAR-----IHIM-ENHGRDVL-PF 183 (365)
Q Consensus 116 ~KIAV~lHly-Y~DLl~Ei~~~L~~ip-~~~DL~ITt~~~~~~~~~~i~~---~~~~~~-----I~vv-~NRGRDI~-Pf 183 (365)
|+|+|++=.| -++.+.++++.+.+.. .++.++|..+.........+.+ ..+... +.++ .+++.-.+ ..
T Consensus 1 P~isViip~yn~~~~l~~~l~sl~~q~~~~~eiiivdd~S~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 97999995389889999999999828899859999989797308999999743012221111234321121345599999
Q ss_pred HHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
Q ss_conf 97506445268688999656867677777334478999999875599999999999986289648981566544333323
Q gi|254780923|r 184 LILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNKYCD 263 (365)
Q Consensus 184 Lv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~~~~ 263 (365)
-.++ ...+.|+|+.+++== .+ +++.+..++..++++|..+++++........
T Consensus 81 ~~~~---~~a~~d~i~~lD~D~---------------------~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--- 132 (255)
T 1qg8_A 81 NQAI---EMAEGEYITYATDDN---------------------IY-MPDRLLKMVRELDTHPEKAVIYSASKTYHLN--- 132 (255)
T ss_dssp HHHH---HHCCCSEEEEEETTE---------------------EE-CTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---
T ss_pred HHHH---HHCCCCEEEEECCCC---------------------CC-CCCHHHHHHHHHHHCCCEEEEEEEEEEEEEC---
T ss_conf 9987---616876689960674---------------------31-0238999999998689815999433999967---
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCC
Q ss_conf 4454102289999999984899873326637701477329888878718
Q gi|254780923|r 264 YTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKNL 312 (365)
Q Consensus 264 ~~~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~dl 312 (365)
.+....... .............+..|+..-++..+++...-.
T Consensus 133 ------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (255)
T 1qg8_A 133 ------ENRDIVKET-VRPAAQVTWNAPCAIDHCSVMHRYSVLEKVKEK 174 (255)
T ss_dssp ---------CEEEEE-EECCCSCBSCCTTTSCGGGEEEETHHHHHHHHH
T ss_pred ------CCCCEECCC-CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf ------986352444-474045566403667666147799999998776
No 5
>>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, GDP- mannose; 2.20A {Rubrobacter xylanophilus} (A:)
Probab=83.33 E-value=3.2 Score=21.09 Aligned_cols=178 Identities=11% Similarity=-0.020 Sum_probs=92.1
Q ss_pred CCCCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHH----CCCCCCEEEEEC--CC-HHHHHHHHHHHCCCCEEEE---EC
Q ss_conf 787543122475599999436-7779999999981----899831899808--63-1799999985258837999---45
Q gi|254780923|r 106 MGKVMQIAIKAKIAIVVHLYY-IDLWIEIANLLSN----LSISFDLHVTLV--TE-SASIKSEILKIFPAARIHI---ME 174 (365)
Q Consensus 106 ~~~~~~~~~k~KIAV~lHlyY-~DLl~Ei~~~L~~----ip~~~DL~ITt~--~~-~~~~~~~i~~~~~~~~I~v---v~ 174 (365)
.+...+...+++|.|++=.|= .+.+.++++.+.+ -..++.++|.-+ ++ ..++..+.....+...+.+ -+
T Consensus 84 ~~~~~~~~~~~~iSViIp~yN~~~~l~~~l~sl~~~~~q~~~~~EIIVVDdgStD~t~~i~~~~~~~~~~~~~~~~~~~~ 163 (387)
T 3f1y_A 84 DLARRKRELGLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGD 163 (387)
T ss_dssp HHHHHHHHHTCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCS
T ss_pred HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 99974124899899996768787799999999999863679982899998959716799999861522566536763124
Q ss_pred CCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 66731789997506445268688999656867677777334478999999875599999999999986289648981566
Q gi|254780923|r 175 NHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRA 254 (365)
Q Consensus 175 NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~ 254 (365)
|.|.-- ++-.++. ..+.|+|+.+.+=-. +-+++.++.++..+.++|+++++.+..
T Consensus 164 ~~g~~~-a~n~g~~---~a~gd~i~~lD~D~~---------------------~~~~~~l~~l~~~~~~~~~~~~v~~~~ 218 (387)
T 3f1y_A 164 AHGKGD-AMWRALS---VTRGDLVLYIDADTR---------------------DFRPQLAYGVLGPVLEVPGVRFVKAAY 218 (387)
T ss_dssp CCSHHH-HHHHHTT---TCCSSEEEECCTTCS---------------------SCCTHHHHTTHHHHHHSTTCCEEEEEE
T ss_pred CCCCHH-HHHHHHH---HHCCCCCEEECCCCC---------------------CCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 688237-7500355---412331214437677---------------------799999999999998489730563211
Q ss_pred CCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHH
Q ss_conf 54433332344-54102289999999984899873326637701477329888878
Q gi|254780923|r 255 YRYPNKYCDYT-CSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPI 309 (365)
Q Consensus 255 ~~~~~~~~~~~-~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL 309 (365)
......-.... ..+............+..... ........|.++-.|.+++..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 273 (387)
T 3f1y_A 219 RRPFRKGESIEEDGGGRVTELTAKPLFNLFYPE-LAGFVQPLAGEFVADRELFCSI 273 (387)
T ss_dssp ECC-------CCBCCSHHHHHTHHHHHHHHCGG-GTTCSCTTCSCEEEEHHHHTTS
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEECCCCCCEEEEHHHHHCC
T ss_conf 013477763223320345555543565410234-4530036655367877663256
No 6
>>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* (A:1-370)
Probab=72.03 E-value=6.9 Score=19.06 Aligned_cols=179 Identities=7% Similarity=-0.044 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCEEEEEEECC-HH-HHHHHHHHHHHCCCC---CCEEEEECCCHHHHHHHHHHHCCCCEEEE-ECCCCCHH
Q ss_conf 87543122475599999436-77-799999999818998---31899808631799999985258837999-45667317
Q gi|254780923|r 107 GKVMQIAIKAKIAIVVHLYY-ID-LWIEIANLLSNLSIS---FDLHVTLVTESASIKSEILKIFPAARIHI-MENHGRDV 180 (365)
Q Consensus 107 ~~~~~~~~k~KIAV~lHlyY-~D-Ll~Ei~~~L~~ip~~---~DL~ITt~~~~~~~~~~i~~~~~~~~I~v-v~NRGRDI 180 (365)
.......-.++|.|++=.|= .+ ++.++++.+.+-..+ +.++|.-+.........+.+..++..+.. -+|+|.-
T Consensus 57 ~~~~~~~~~p~iSIIIp~yN~~e~~l~~~l~Si~~Q~~~~~~~EIIvVDDgStD~t~~~~~~~~~~~~~i~~~~n~G~~- 135 (370)
T 2ffu_A 57 QRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLM- 135 (370)
T ss_dssp GGCCCCSSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECSSCCHHH-
T ss_pred CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCHH-
T ss_conf 1366799999727999767581799999999999649352088799997899756799999628880599788986748-
Q ss_pred HHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 89997506445268688999656867677777334478999999875599999999999986289648981566544333
Q gi|254780923|r 181 LPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNK 260 (365)
Q Consensus 181 ~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~ 260 (365)
+++-.+++ ..+.|+|+.+.+= ..+ .++.+..++..++++|..++++.........
T Consensus 136 ~a~N~gi~---~a~ge~i~flD~D---------------------d~~-~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 190 (370)
T 2ffu_A 136 RSRVRGAD---AAQAKVLTFLDSH---------------------CEC-NEHWLEPLLERVAEDRTRVVSPIIDVINMDN 190 (370)
T ss_dssp HHHHHHHH---HCCSSEEEECCSS---------------------EEE-CTTCHHHHHHHHHHCTTEEEEEEEEEECTTT
T ss_pred HHHHHHHH---HCCCCEEEEECCC---------------------CCC-CCHHHHHHHHHHHHCCCCCCCCEEEECCCCC
T ss_conf 99999888---6689889995353---------------------030-5018999999986267630122354207987
Q ss_pred CCC------------CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHC
Q ss_conf 323------------445410228999999998489987332663770147732988887871
Q gi|254780923|r 261 YCD------------YTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKN 311 (365)
Q Consensus 261 ~~~------------~~~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~d 311 (365)
... .............................+..|....+|.+++..+--
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (370)
T 2ffu_A 191 FQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGK 253 (370)
T ss_dssp CCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTC
T ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCC
T ss_conf 033045544355422243333243443554301234456543553121689999999998399
No 7
>>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* (A:57-416)
Probab=65.06 E-value=9.7 Score=18.18 Aligned_cols=128 Identities=9% Similarity=0.049 Sum_probs=81.8
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECC--HHHHHHHHHHHHHCCCC---CCEEEEEC--CC-HHH-HHHHHHHHCCCCEEE
Q ss_conf 15877787543122475599999436--77799999999818998---31899808--63-179-999998525883799
Q gi|254780923|r 101 WESPAMGKVMQIAIKAKIAIVVHLYY--IDLWIEIANLLSNLSIS---FDLHVTLV--TE-SAS-IKSEILKIFPAARIH 171 (365)
Q Consensus 101 ~~~p~~~~~~~~~~k~KIAV~lHlyY--~DLl~Ei~~~L~~ip~~---~DL~ITt~--~~-~~~-~~~~i~~~~~~~~I~ 171 (365)
...+...........++|.|++=.|= .+.+.++++.+.+-..+ +.++|--+ ++ ..+ +........+...+.
T Consensus 41 ~~~~~~~~~~~~~~~p~vSIIIP~yN~~e~~l~~~l~Si~~Qt~~~~~~eIIivDd~s~d~t~~~i~~~~~~~~~~~~~i 120 (360)
T 2d7i_A 41 IRHPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRIL 120 (360)
T ss_dssp CSCGGGGTCCEESSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEE
T ss_pred CCCHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 88954500667778996799998576838999999999995588668858999989999726789999999648988999
Q ss_pred EE-CCCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 94-56673178999750644526868899965686767777733447899999987559999999999998628964898
Q gi|254780923|r 172 IM-ENHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMI 250 (365)
Q Consensus 172 vv-~NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv 250 (365)
.- +|+|.- .++-.+++ ..+.|||+.+++== .+ .++.++.+++.++++|..+.+
T Consensus 121 ~~~~n~G~~-~a~N~g~~---~a~gdyi~flD~Dd---------------------~~-~~~~l~~~~~~~~~~~~~~~~ 174 (360)
T 2d7i_A 121 RTKKREGLI-RTRMLGAS---VATGDVITFLDSHC---------------------EA-NVNWLPPLLDRIARNRKTIVC 174 (360)
T ss_dssp ECSSCCCHH-HHHHHHHH---HCCSSEEEECCSSE---------------------EE-CTTCSHHHHHHHHHCTTEEEE
T ss_pred ECCCCCCHH-HHHHHHHH---HCCCCEEEEECCCE---------------------EE-CCCHHHHHHHHHHCCCCCEEE
T ss_conf 888986749-99999999---70699799935874---------------------98-810999999998628873361
Q ss_pred ECCC
Q ss_conf 1566
Q gi|254780923|r 251 GSRA 254 (365)
Q Consensus 251 ~P~~ 254 (365)
++..
T Consensus 175 ~~~~ 178 (360)
T 2d7i_A 175 PMID 178 (360)
T ss_dssp EEEE
T ss_pred CEEE
T ss_conf 1032
No 8
>>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} (A:1-123,A:316-361)
Probab=49.25 E-value=18 Score=16.56 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=36.6
Q ss_pred CCCCCCCCEEEEEE------EHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 33266377014773------29888878718997121865558888739999999
Q gi|254780923|r 288 DQKLDFFAGTMFWV------RTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVER 336 (365)
Q Consensus 288 ~~~~~FpaGSMFW~------Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIER 336 (365)
++-..+..|++.|. .++.++.|.+.+...-+ -|..+.++|+++.+|=
T Consensus 79 ~ei~~lk~G~~lis~l~p~~n~~ll~~l~~kgitaia--lE~IpRist~~y~~~~ 131 (169)
T 1pjc_A 79 AEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIA--YETVELPNTLPYVVKL 131 (169)
T ss_dssp GGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEE--GGGCCCTTHHHHHHHH
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEEC--CCCCCCCCHHHHHHHH
T ss_conf 8986314675899953011587999999746873441--3121247999999999
No 9
>>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} (A:1-230)
Probab=49.20 E-value=18 Score=16.56 Aligned_cols=187 Identities=12% Similarity=0.011 Sum_probs=96.2
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHCC---CCCCEEEEECCCHHHHHHHH---HHHCCCCEEEEEC-CC----CCHHHHH-
Q ss_conf 75599999436777999999998189---98318998086317999999---8525883799945-66----7317899-
Q gi|254780923|r 116 AKIAIVVHLYYIDLWIEIANLLSNLS---ISFDLHVTLVTESASIKSEI---LKIFPAARIHIME-NH----GRDVLPF- 183 (365)
Q Consensus 116 ~KIAV~lHlyY~DLl~Ei~~~L~~ip---~~~DL~ITt~~~~~~~~~~i---~~~~~~~~I~vv~-NR----GRDI~Pf- 183 (365)
++|+|++=.|=.+.+.++++.+.+.. ..+.++|--+.......+.+ ....+.+.+...+ ++ ++-++.-
T Consensus 2 p~isViIp~yn~~~l~~~l~si~~q~~~~~~~eIivvDd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (230)
T 1fo8_A 2 AVIPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (230)
T ss_dssp CCCCEEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 72218999757889999999998448677883699997599641799999976550266346766652450354313338
Q ss_pred ------HHHHCH-HHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf ------975064-4526868899965686767777733447899999987559999999999998628964898156654
Q gi|254780923|r 184 ------LILLET-EQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYR 256 (365)
Q Consensus 184 ------Lv~~~~-~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~ 256 (365)
-..... ....+.|+|+.+.+-=.. .++.+..++..++++|....+++....
T Consensus 82 ~~~~g~~~a~~~~~~~a~~~~i~~lD~D~~~----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (230)
T 1fo8_A 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEV----------------------APDFFEYFQATYPLLKADPSLWCVSAW 139 (230)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEE----------------------CTTHHHHHHHHHHHHHHCTTEEEEESC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCC----------------------CCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8887899999999864378779998378651----------------------700899999999997429980699431
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCC-CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 433332344541022899999999848998733266377014773298888787189-9712186555888873999999
Q gi|254780923|r 257 YPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKNLR-LSRYFEPKVHKALDGEIEHAVE 335 (365)
Q Consensus 257 ~~~~~~~~~~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~dl~-l~~~dFpeE~g~~DGTLaHAIE 335 (365)
... .+..... ...........+..|+.+-+|.++++.+-... ...+ +
T Consensus 140 ~~~----------~~~~~~~-----~~~~~~~~~~~~~~g~~~~~r~~~~~~~~~~~~~~~e-----------------D 187 (230)
T 1fo8_A 140 NDN----------GKEQMVD-----SSKPELLYRTDFFPGLGWLLLAELWAELEPKWPKAFW-----------------D 187 (230)
T ss_dssp CTT----------CBGGGSC-----TTCTTCEEEESSCCCSSEEEEHHHHHHHGGGCCSSCH-----------------H
T ss_pred CCC----------CCCCCCC-----CCCCCEEEECCCCCCHHHHCCHHHHHHHCCCCCCCCC-----------------C
T ss_conf 256----------8666666-----7887447751467712077049989962744676566-----------------2
Q ss_pred HHHHHHHHHCCCEEEEEHHHH
Q ss_conf 999999887398788726642
Q gi|254780923|r 336 RCFSLSVKKANFRISDVDCIL 356 (365)
Q Consensus 336 Rl~~~iv~~aGyri~~v~~~~ 356 (365)
.-+.+-+..+|+++.-+....
T Consensus 188 ~~~~~~~~~~g~~~~~~~~~~ 208 (230)
T 1fo8_A 188 DWMRRPEQRKGRACVRPEISR 208 (230)
T ss_dssp HHHTSHHHHTTCEEEEESSBS
T ss_pred HHHHHHHHHCCCEEEECCCEE
T ss_conf 666557863598577346333
No 10
>>3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1} (A:323-375,A:969-994,A:1252-1275)
Probab=37.95 E-value=18 Score=16.61 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=18.4
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8878718997121865558888739999999999
Q gi|254780923|r 306 LDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFS 339 (365)
Q Consensus 306 L~pL~dl~l~~~dFpeE~g~~DGTLaHAIERl~~ 339 (365)
|+.|.+.+...+|-.--|-.....+-|||||+--
T Consensus 40 lralmeanvtaddralmptlstsqirhaieriaq 73 (103)
T 3cnf_A 40 LRALMEANVTADDRALMPTLSTSQIRHAIERIAQ 73 (103)
T ss_pred HHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 9999864366899901888676999999999999
No 11
>>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO2589, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} (A:1-41,A:277-391)
Probab=36.89 E-value=19 Score=16.40 Aligned_cols=105 Identities=10% Similarity=-0.046 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 44789999998755999999999999862896489815665443333234454102289999999984899873326637
Q gi|254780923|r 215 EGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNKYCDYTCSLGKNREMICTLAGRMGITFQDQKLDFF 294 (365)
Q Consensus 215 ~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~~~~~~~~wg~N~~~~~~L~~rlgi~~~~~~~~Fp 294 (365)
-|+.|-..+...+- ...+.+++.|.+.|.+-.+.|.+-.+. |..+........+....|+++.|+-..+...-++
T Consensus 41 ~~d~~i~~~r~~l~---~rr~~l~~~L~~~~~v~v~~P~GG~fi--w~~l~~~~~s~~e~~~~Ll~e~gV~v~PGs~F~~ 115 (156)
T 3h14_A 41 PCDAELQANLDVYK---ANRKLXLERLPKAGFTRIAPPDGAFYV--YADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP 115 (156)
T ss_dssp CCHHHHHHHHHHHH---HHHHHHHHHHHHHTCCCBCCCCBTTEE--EEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT
T ss_pred CCCHHHHHHHHHHH---HHHHHHHHHHCCCCCEEECCCCEEEEE--EEECCCCCCCHHHHHHHHHHHCCEEEECCHHCCC
T ss_conf 93202578999876---544444443111243175588834799--8989888889999999999849999984221199
Q ss_pred CEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 701477329888878718997121865558888739999999999998
Q gi|254780923|r 295 AGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVERCFSLSV 342 (365)
Q Consensus 295 aGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIERl~~~iv 342 (365)
.++--|+|-.. ...+-.+..|++||--.+-
T Consensus 116 ~~~~~~iRi~f------------------a~~~e~l~eai~rL~~al~ 145 (156)
T 3h14_A 116 ERGAGTLRFSY------------------ARATADIEEGLDRLEAFXQ 145 (156)
T ss_dssp TTGGGEEEEEC------------------CSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEE------------------CCCHHHHHHHHHHHHHHHH
T ss_conf 88999899997------------------3999999999999999999
No 12
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:1-121,A:255-277)
Probab=34.98 E-value=30 Score=15.21 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCEEEEE------EECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH---CCCCEEEEECCC
Q ss_conf 78754312247559999------943677799999999818998318998086317999999852---588379994566
Q gi|254780923|r 106 MGKVMQIAIKAKIAIVV------HLYYIDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKI---FPAARIHIMENH 176 (365)
Q Consensus 106 ~~~~~~~~~k~KIAV~l------HlyY~DLl~Ei~~~L~~ip~~~DL~ITt~~~~~~~~~~i~~~---~~~~~I~vv~NR 176 (365)
..+.........||+++ .-||.+++..+.+.+... .+++.+..+....+.+.+..+. ..---|.++++.
T Consensus 10 ~Ar~L~~~~s~~Igiiip~~~~~~~f~~~i~~gi~~~~~~~--gy~v~i~~~~~d~~~~~~~i~~l~~~~vDGiIi~~~~ 87 (144)
T 3brq_A 10 LARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARXAEEK--GRQLLLADGKHSAEEERQAIQYLLDLRCDAIXIYPRF 87 (144)
T ss_dssp ---------CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--TCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99997418999799995886546879999999999999985--9999999689998999999998863465302440333
Q ss_pred CCHHH
Q ss_conf 73178
Q gi|254780923|r 177 GRDVL 181 (365)
Q Consensus 177 GRDI~ 181 (365)
-+|..
T Consensus 88 ~~~~~ 92 (144)
T 3brq_A 88 LSVDE 92 (144)
T ss_dssp SCHHH
T ss_pred CCHHH
T ss_conf 21178
No 13
>>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-78)
Probab=28.63 E-value=39 Score=14.56 Aligned_cols=59 Identities=19% Similarity=0.091 Sum_probs=34.0
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHC-------------CCCCCEEEEECCCHHHHHHHHHHHC-CCCEEEEECCCCC
Q ss_conf 559999943677799999999818-------------9983189980863179999998525-8837999456673
Q gi|254780923|r 117 KIAIVVHLYYIDLWIEIANLLSNL-------------SISFDLHVTLVTESASIKSEILKIF-PAARIHIMENHGR 178 (365)
Q Consensus 117 KIAV~lHlyY~DLl~Ei~~~L~~i-------------p~~~DL~ITt~~~~~~~~~~i~~~~-~~~~I~vv~NRGR 178 (365)
||+++.|-..++..+++.+.++.. +..+|+.||.= ..-.+ -...+.+ .++-|.-+ |.||
T Consensus 2 ki~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Dlvi~iG-GDGT~-L~a~~~~~~~~PvlGi-N~G~ 74 (78)
T 1yt5_A 2 KIAILYREEREKEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVG-GDGTV-LKAAKKAADGTPMVGF-KAGR 74 (78)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTTTSEEEEEEESSSCSCBCCSEEEEEE-CHHHH-HHHHTTBCTTCEEEEE-ESSS
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEC-CCHHH-HHHHHHHCCCCCEEEE-ECCC
T ss_conf 899998887467899999998876063223034745567878999989-85999-9999971779988976-0365
No 14
>>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:1-104,A:237-271)
Probab=27.86 E-value=40 Score=14.48 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=49.7
Q ss_pred CCCEEEEE----EECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHC--CCCEEEEECCCC-CHHHHHHHHH
Q ss_conf 47559999----9436777999999998189983189980863179999998525--883799945667-3178999750
Q gi|254780923|r 115 KAKIAIVV----HLYYIDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIF--PAARIHIMENHG-RDVLPFLILL 187 (365)
Q Consensus 115 k~KIAV~l----HlyY~DLl~Ei~~~L~~ip~~~DL~ITt~~~~~~~~~~i~~~~--~~~~I~vv~NRG-RDI~PfLv~~ 187 (365)
|.+||+++ +-||.++...+.+.++.. ++++.+..+....+.+.+..+.+ .+++-.++-+-+ ....|.+..+
T Consensus 1 K~tIgvi~~~~~~~f~~~i~~gi~~~a~~~--G~~l~i~~~~~~~~~~~~~i~~li~~~vdgiIi~~~~~~~~~~~l~~l 78 (139)
T 2dri_A 1 KDTIALVVSTLNNPFFVSLKDGAQKEADKL--GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (139)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--TCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 988999928898989999999999999985--998999958999999999999998618764432122222316899999
Q ss_pred CHHHHCCCCEEEEE
Q ss_conf 64452686889996
Q gi|254780923|r 188 ETEQLSNYDYVCKI 201 (365)
Q Consensus 188 ~~~~l~~YD~v~ki 201 (365)
.+. +--+|+-=
T Consensus 79 ~~~---gIPvV~id 89 (139)
T 2dri_A 79 NQA---NIPVITLD 89 (139)
T ss_dssp HHT---TCCEEEES
T ss_pred HHC---CCCCCCCC
T ss_conf 863---77532356
No 15
>>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8} (A:371-496)
Probab=26.31 E-value=43 Score=14.31 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=48.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHH--HCCCCEEEEECCCCCHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 9831899808631799999985--25883799945667317899975064452686889996568676777773344789
Q gi|254780923|r 142 ISFDLHVTLVTESASIKSEILK--IFPAARIHIMENHGRDVLPFLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLW 219 (365)
Q Consensus 142 ~~~DL~ITt~~~~~~~~~~i~~--~~~~~~I~vv~NRGRDI~PfLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~W 219 (365)
...|+||-......++...+.+ ..++.++..+-|||--|-|- +.. +..---.+-|.+..+.....
T Consensus 20 VGVDVfv~w~~~~~~L~~~l~~l~~~~~lkL~~IsnRGvkVWP~--~~~-et~~tDhwrCRF~~~~~~~i---------- 86 (126)
T 2d1c_A 20 VGVDVFVETNLLPEALGKALEDLAAGTPFRLKMISNRGTQVYPP--TGG-LTDLVDHYRCRFLYTGEGEA---------- 86 (126)
T ss_dssp EEEEEEEECCSCHHHHHHHHHHHHTTSSEEEEEEEETTEEEESC--CSC-CCCCCSEEEEEEEECSSSCC----------
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEECCC--CCC-CCCCCCCEEEEEEECCCCCC----------
T ss_conf 87689997599989999999850469980799993298678999--998-76555665888875798867----------
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999987559999999999998628
Q gi|254780923|r 220 RRWLFYDLLGAPGVVFKIIRTFDTH 244 (365)
Q Consensus 220 R~~Ll~~LLGs~~~V~~Il~~F~~n 244 (365)
+...|.++|..++..
T Consensus 87 ----------~~~~I~~LL~~l~a~ 101 (126)
T 2d1c_A 87 ----------KDPEILDLVSRVASR 101 (126)
T ss_dssp ----------CHHHHHHHHHHHHTT
T ss_pred ----------CHHHHHHHHHHHHCC
T ss_conf ----------789999999999759
No 16
>>1vkr_A Mannitol-specific PTS system enzyme iiabc components; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli O157} (A:)
Probab=24.03 E-value=47 Score=14.05 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=16.1
Q ss_pred HHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8189983189980863179999998525883799945
Q gi|254780923|r 138 SNLSISFDLHVTLVTESASIKSEILKIFPAARIHIME 174 (365)
Q Consensus 138 ~~ip~~~DL~ITt~~~~~~~~~~i~~~~~~~~I~vv~ 174 (365)
..++..+|++||| ..+..++....+.+.|..+.
T Consensus 54 ~~~~~~~DlIitt----~~l~~~~~~~~~~~~vi~v~ 86 (125)
T 1vkr_A 54 NNLPPDVDLVITH----RDLTERAMRQVPQAQHISLT 86 (125)
T ss_dssp TCCCTTCSEEEEE----HHHHHHHHHHCTTSEEEEES
T ss_pred HCCCCCCCEEEEC----HHHHHHHHHCCCCCEEEEEE
T ss_conf 2178898799988----78889998229998399982
No 17
>>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5'-triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} (A:1-269)
Probab=20.60 E-value=55 Score=13.63 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHH-----HHHHHHCHHHHC-CCCEEEEECCCCCCC
Q ss_conf 99999985258837999456673178-----999750644526-868899965686767
Q gi|254780923|r 156 SIKSEILKIFPAARIHIMENHGRDVL-----PFLILLETEQLS-NYDYVCKIHGKKSKR 208 (365)
Q Consensus 156 ~~~~~i~~~~~~~~I~vv~NRGRDI~-----PfLv~~~~~~l~-~YD~v~kiHTKKS~~ 208 (365)
+++..+.+.....+|.++| .|=-|+ |||.+.+....+ +.+-+|.+|.-=-|.
T Consensus 122 eIk~~I~~~a~~~Di~ivE-IGGTVGDIES~pFlEAirQl~~~~g~~n~~~iHvtlvPy 179 (269)
T 1s1m_A 122 AIKERVLEGGEGHDVVLVE-IGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPY 179 (269)
T ss_dssp HHHHHHHHHHTTCSEEEEE-ECSCTTSSTTHHHHHHHHHHHHHHCTTSEEEEEEEECCE
T ss_pred HHHHHHHHCCCCCCEEEEE-CCCHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9999997046778679997-132044553064999999998760887689995124443
No 18
>>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription regulator; 2.30A {Thermococcus kodakarensis KOD1} (A:14-95)
Probab=20.51 E-value=55 Score=13.62 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=9.1
Q ss_pred HHHCCCCEEEEECCCC
Q ss_conf 8525883799945667
Q gi|254780923|r 162 LKIFPAARIHIMENHG 177 (365)
Q Consensus 162 ~~~~~~~~I~vv~NRG 177 (365)
.+.-+...|.+|||.|
T Consensus 53 ~k~~~Gi~i~vvP~kg 68 (82)
T 2czr_A 53 GKDVNGIHIVAIPDNG 68 (82)
T ss_dssp SCCCSSEEEEEESCTT
T ss_pred CCCCCCEEEEEECCCC
T ss_conf 0557981899977997
Done!