Query gi|254780923|ref|YP_003065336.1| hypothetical protein CLIBASIA_04110 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 365
No_of_seqs 111 out of 158
Neff 5.0
Searched_HMMs 23785
Date Tue May 31 22:45:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780923.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qg8_A Protein (spore coat pol 95.2 0.16 6.5E-06 28.1 10.0 115 116-253 1-125 (255)
2 2z86_A Chondroitin synthase; G 93.4 0.39 1.6E-05 25.7 19.5 116 113-255 372-493 (625)
3 2ffu_A Ppgalnact-2, polypeptid 86.3 1.6 6.9E-05 21.9 12.8 202 116-355 66-285 (501)
4 1omz_A Alpha-1,4-N-acetylhexos 47.2 14 0.00057 16.4 12.1 117 113-255 25-145 (293)
5 1vkr_A Mannitol-specific PTS s 46.7 14 0.00058 16.3 4.3 32 140-175 56-87 (125)
6 3bcv_A Putative glycosyltransf 32.2 24 0.00099 14.9 10.3 204 114-356 3-221 (240)
7 2rbg_A Putative uncharacterize 24.5 32 0.0014 14.1 5.4 23 183-205 49-71 (126)
8 1qwj_A Cytidine monophospho-N- 20.1 40 0.0017 13.6 6.8 96 129-251 30-130 (229)
9 2bw2_A Bypass of forespore C; 19.9 37 0.0015 13.8 1.6 46 45-90 38-90 (140)
10 2rps_A Chemokine; peptide, imm 17.4 31 0.0013 14.2 0.7 12 61-72 10-21 (32)
No 1
>1qg8_A Protein (spore coat polysaccharide biosynthesis protein SPSA); glycosyltransferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=95.21 E-value=0.16 Score=28.07 Aligned_cols=115 Identities=16% Similarity=0.267 Sum_probs=68.4
Q ss_pred CCEEEEEEEC-CHHHHHHHHHHHHHCCC-CCCEEEEECCCHHHHHHHHHHHCC--CCEEEEECCCC-----CHHHHHHHH
Q ss_conf 7559999943-67779999999981899-831899808631799999985258--83799945667-----317899975
Q gi|254780923|r 116 AKIAIVVHLY-YIDLWIEIANLLSNLSI-SFDLHVTLVTESASIKSEILKIFP--AARIHIMENHG-----RDVLPFLIL 186 (365)
Q Consensus 116 ~KIAV~lHly-Y~DLl~Ei~~~L~~ip~-~~DL~ITt~~~~~~~~~~i~~~~~--~~~I~vv~NRG-----RDI~PfLv~ 186 (365)
|||.|++=.| -++.+.++++-+.+-.. .++++|.-..........+.+..+ ++++...+|.| +..+.- ..
T Consensus 1 P~vSIiip~yN~~~~l~~~l~Si~~qt~~~~eiiivdd~S~d~t~~~~~~~~~~~~i~~~~~~~~~~~~~~~n~g~~-~a 79 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYA-AL 79 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHH-HH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHH-HH
T ss_conf 97999995389889999999999828899859999989797318999999732011110002344320011335599-99
Q ss_pred HCH-HHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 064-4526868899965686767777733447899999987559999999999998628964898156
Q gi|254780923|r 187 LET-EQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSR 253 (365)
Q Consensus 187 ~~~-~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~ 253 (365)
.+. ....+.|+|+.+++= .++ +++.++.+++.|+++|++++|++.
T Consensus 80 ~N~gi~~a~g~~i~~lD~D---------------------d~~-~p~~l~~~~~~~~~~~~~~~v~~~ 125 (255)
T 1qg8_A 80 INQAIEMAEGEYITYATDD---------------------NIY-MPDRLLKMVRELDTHPEKAVIYSA 125 (255)
T ss_dssp HHHHHHHCCCSEEEEEETT---------------------EEE-CTTHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHCCCCCEEEEECCC---------------------CCC-CCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf 9855431587546773266---------------------431-123799999999868981699933
No 2
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=93.41 E-value=0.39 Score=25.67 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=71.1
Q ss_pred CCCCCEEEEEEEC-CHHHHHHHHHHHHHCC-CCCCEEEEEC--C-CHHHHHHHHHHHCCCCEEEEECCCCCHHHHH-HHH
Q ss_conf 2247559999943-6777999999998189-9831899808--6-3179999998525883799945667317899-975
Q gi|254780923|r 113 AIKAKIAIVVHLY-YIDLWIEIANLLSNLS-ISFDLHVTLV--T-ESASIKSEILKIFPAARIHIMENHGRDVLPF-LIL 186 (365)
Q Consensus 113 ~~k~KIAV~lHly-Y~DLl~Ei~~~L~~ip-~~~DL~ITt~--~-~~~~~~~~i~~~~~~~~I~vv~NRGRDI~Pf-Lv~ 186 (365)
...++|.|++-.| -++.+.++++.+.+-. ..+.++|.-+ + +..++..+.....+.+.+...+|.|. +.- =.+
T Consensus 372 ~~~p~vsvii~~~n~~~~l~~~l~Si~~q~~~~~eiiivdd~s~~~t~~~l~~~~~~~~~i~~~~~~n~g~--~~a~N~~ 449 (625)
T 2z86_A 372 KRVPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFISQKNKGI--GSASNTA 449 (625)
T ss_dssp CSSCSEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEEECCCCH--HHHHHHH
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCH--HHHHHHH
T ss_conf 67864777403445177788876521011223278999747998427999999863288189995689888--9999999
Q ss_pred HCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 064452686889996568676777773344789999998755999999999999862896489815665
Q gi|254780923|r 187 LETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAY 255 (365)
Q Consensus 187 ~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~ 255 (365)
+ ...+-|||+.+++-= ++ .++.++.++..|+++|.+++|++...
T Consensus 450 i---~~a~g~~i~~ld~Dd---------------------~~-~p~~l~~~~~~~~~~~~~~~v~~~~~ 493 (625)
T 2z86_A 450 V---RLCRGFYIGQLDSDD---------------------FL-EPDAVELCLDEFRKDLSLACVYTTNR 493 (625)
T ss_dssp H---HHCCSSEEEECCTTC---------------------EE-CTTHHHHHHHHHHHCTTCSEEEEEEE
T ss_pred H---HHCCCCEEEEECCCC---------------------CC-CHHHHHHHHHHHHHCCCCCEEECCEE
T ss_conf 9---858988899976897---------------------60-82799999999984988536841348
No 3
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=86.26 E-value=1.6 Score=21.90 Aligned_cols=202 Identities=9% Similarity=0.039 Sum_probs=99.7
Q ss_pred CCEEEEEEECCH--H-HHHHHHHHHHHCCCCC--CEEEEECCCHHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHCH
Q ss_conf 755999994367--7-7999999998189983--189980863179999998525883799945-667317899975064
Q gi|254780923|r 116 AKIAIVVHLYYI--D-LWIEIANLLSNLSISF--DLHVTLVTESASIKSEILKIFPAARIHIME-NHGRDVLPFLILLET 189 (365)
Q Consensus 116 ~KIAV~lHlyY~--D-Ll~Ei~~~L~~ip~~~--DL~ITt~~~~~~~~~~i~~~~~~~~I~vv~-NRGRDI~PfLv~~~~ 189 (365)
|+|-|++-.|=. . |+..+-..++.-|..+ .|+|--+-........+.+..+++.|...+ |.|. +++...+++
T Consensus 66 P~vSVII~~~Ne~~~~L~rti~Svl~~tp~~ll~EIIvVDDgStd~t~~~l~~~~~~ikii~~~~n~G~-~~ArN~G~~- 143 (501)
T 2ffu_A 66 PATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGL-MRSRVRGAD- 143 (501)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECSSCCHH-HHHHHHHHH-
T ss_pred CCEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHH-
T ss_conf 985899984008479999999999855951039889999899993289999861998799989998588-999999999-
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC------CCCCCCC-
Q ss_conf 452686889996568676777773344789999998755999999999999862896489815665------4433332-
Q gi|254780923|r 190 EQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAY------RYPNKYC- 262 (365)
Q Consensus 190 ~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~------~~~~~~~- 262 (365)
...-|+|+++.+== .+ +++.++.++..+++++..+.+..-.. .+.....
T Consensus 144 --~A~Gd~I~fLD~D~---------------------~~-~~~wLe~Ll~~i~~~~~~~v~p~i~~~~~~~~~~~~~~~~ 199 (501)
T 2ffu_A 144 --AAQAKVLTFLDSHC---------------------EC-NEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASAD 199 (501)
T ss_dssp --HCCSSEEEECCSSE---------------------EE-CTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECBCSS
T ss_pred --HCCCCEEEEECCCC---------------------CC-CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEECCCCCC
T ss_conf --72799899988998---------------------77-9769999999998199717730475117886022155544
Q ss_pred -----CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -----344541022899999999848998733266377014773298888787189971218655588887399999999
Q gi|254780923|r 263 -----DYTCSLGKNREMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVERC 337 (365)
Q Consensus 263 -----~~~~~wg~N~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIERl 337 (365)
.+................+......+....+.+|..|-+|.+++..+=-.+-....+--| +--
T Consensus 200 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~irR~~f~~iGgfDe~~~~~g~E------------D~d 267 (501)
T 2ffu_A 200 LKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGE------------NLE 267 (501)
T ss_dssp EEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCCTTCCSSSSH------------HHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCH------------HHH
T ss_conf 35532113333434355466541013545543344201123456899999718999864566620------------799
Q ss_pred HHHHHHHCCCEEEEEHHH
Q ss_conf 999988739878872664
Q gi|254780923|r 338 FSLSVKKANFRISDVDCI 355 (365)
Q Consensus 338 ~~~iv~~aGyri~~v~~~ 355 (365)
+.+-+..+|++|.-+-|.
T Consensus 268 ls~R~~~~Gg~i~~~P~s 285 (501)
T 2ffu_A 268 ISFRVWQCGGSLEIIPCS 285 (501)
T ss_dssp HHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHCCCCEEEECCE
T ss_conf 999987547849994873
No 4
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=47.23 E-value=14 Score=16.37 Aligned_cols=117 Identities=10% Similarity=0.037 Sum_probs=74.0
Q ss_pred CCCCCEEEEEEECC-HHHHHHHHHHHHHCCCCCCEEEEECCC---HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 22475599999436-777999999998189983189980863---17999999852588379994566731789997506
Q gi|254780923|r 113 AIKAKIAIVVHLYY-IDLWIEIANLLSNLSISFDLHVTLVTE---SASIKSEILKIFPAARIHIMENHGRDVLPFLILLE 188 (365)
Q Consensus 113 ~~k~KIAV~lHlyY-~DLl~Ei~~~L~~ip~~~DL~ITt~~~---~~~~~~~i~~~~~~~~I~vv~NRGRDI~PfLv~~~ 188 (365)
...++++|++=-|= +|++.++++.+.+.+....++|-.... ..+...+.....+...+..-+|.|---+ .-.+++
T Consensus 25 ~~~~~~tviI~tynr~~~L~~~l~sl~~~~~~~~iiVV~n~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a-~n~g~~ 103 (293)
T 1omz_A 25 SALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRN-RLQVFP 103 (293)
T ss_dssp -CTTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGG-GGSCCT
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHH-HHHHHH
T ss_conf 8899779999468998999999999980899983999989999976899986407899789996289880878-766687
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 4452686889996568676777773344789999998755999999999999862896489815665
Q gi|254780923|r 189 TEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAY 255 (365)
Q Consensus 189 ~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~ 255 (365)
..+.|+|..+-+= .++ .++.+++++..|+++|..++.++...
T Consensus 104 ---~a~~d~i~~lDdD---------------------~~~-~p~~L~~~~~~~~~~~~~~v~~~~~~ 145 (293)
T 1omz_A 104 ---EVETNAVLMVDDD---------------------TLI-SAQDLVFAFSIWQQFPDQIIGFVPRK 145 (293)
T ss_dssp ---TCCSSEEEEECTT---------------------EEE-CHHHHHHHHHHHTTSTTSEEESCEEE
T ss_pred ---HCCCCEEEEECCC---------------------CCC-HHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf ---6695779998751---------------------120-06899999999986985379743221
No 5
>1vkr_A Mannitol-specific PTS system enzyme iiabc components; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli O157} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=46.65 E-value=14 Score=16.32 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=15.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899831899808631799999985258837999456
Q gi|254780923|r 140 LSISFDLHVTLVTESASIKSEILKIFPAARIHIMEN 175 (365)
Q Consensus 140 ip~~~DL~ITt~~~~~~~~~~i~~~~~~~~I~vv~N 175 (365)
++..+||+||+ ..+...+....+++.|..|.|
T Consensus 56 ~~~~~DlIvst----~~l~~~~~~~~~~~~vi~V~n 87 (125)
T 1vkr_A 56 LPPDVDLVITH----RDLTERAMRQVPQAQHISLTN 87 (125)
T ss_dssp CCTTCSEEEEE----HHHHHHHHHHCTTSEEEEESC
T ss_pred CCCCCCEEEEC----HHHHHHHHHHCCCCEEEEEEC
T ss_conf 79899899987----899899983199983999832
No 6
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI- II, NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis nctc 9343}
Probab=32.16 E-value=24 Score=14.93 Aligned_cols=204 Identities=11% Similarity=0.089 Sum_probs=106.4
Q ss_pred CCCCEEEEEEECCH-HHHHHHHHHHHHCC-CCCCEEEEEC---CCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 24755999994367-77999999998189-9831899808---6317999999852588379994566731789997506
Q gi|254780923|r 114 IKAKIAIVVHLYYI-DLWIEIANLLSNLS-ISFDLHVTLV---TESASIKSEILKIFPAARIHIMENHGRDVLPFLILLE 188 (365)
Q Consensus 114 ~k~KIAV~lHlyY~-DLl~Ei~~~L~~ip-~~~DL~ITt~---~~~~~~~~~i~~~~~~~~I~vv~NRGRDI~PfLv~~~ 188 (365)
+-++|.|++=.|=. +.++++++.+.+.. .++.++|.-+ ++..++.++..+..+...+..-+|+|.- ..+-.+++
T Consensus 3 ~~p~isIiIptyN~~~~l~~~l~Si~~q~~~~~eiIIvDd~S~d~t~~~~~~~~~~~~~~~~~~~~n~G~~-~a~n~gi~ 81 (240)
T 3bcv_A 3 LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG-MACNSGLD 81 (240)
T ss_dssp CCCSEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEECCCCCHH-HHHHHHHH
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCEEECCCCCCHH-HHHHHHHH
T ss_conf 89906999973788899999999998087988599999897986643000120233221013123689989-99999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCC-CC------CC
Q ss_conf 445268688999656867677777334478999999875599999999999986289648981566544-33------33
Q gi|254780923|r 189 TEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRY-PN------KY 261 (365)
Q Consensus 189 ~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~-~~------~~ 261 (365)
..++|+|+.+++==-. +++.+.+++.++.+++. ++|....... .. ..
T Consensus 82 ---~a~~~~i~~ld~Dd~~----------------------~~~~l~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~ 135 (240)
T 3bcv_A 82 ---VATGEYVAFCDSDDYV----------------------DSDMYMTMYNVAQKYTC-DAVFTGLKRITMAGIPTGTVT 135 (240)
T ss_dssp ---HCCSSEEEECCTTCCC----------------------CTTHHHHHHHHHHHHTC-SEEEC----------------
T ss_pred ---HCCCCEEEEECCCCCC----------------------CCHHHHHHHHHHHHCCC-CEEEECCEEECCCCCCCCCCC
T ss_conf ---7787989998688776----------------------92699999999982899-899957189857896234312
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC---CCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 23445410228999999998489987---332663770147732988887871899712186555888873999999999
Q gi|254780923|r 262 CDYTCSLGKNREMICTLAGRMGITFQ---DQKLDFFAGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGEIEHAVERCF 338 (365)
Q Consensus 262 ~~~~~~wg~N~~~~~~L~~rlgi~~~---~~~~~FpaGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGTLaHAIERl~ 338 (365)
.........+......+...+-.... ........|..+.+|.++|+.. ++ .|+.|.+. - +=...+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kr~~l~~~---~~---~~~~~~~~-~-----~eD~~f 203 (240)
T 3bcv_A 136 HQKEFKLYKNKNEIHTLLKDLIASDPYAREERAIQVSAKVVLYRRNLIEKK---HL---RFVSERIL-P-----SEDLIF 203 (240)
T ss_dssp ----CEEECSHHHHHHHHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHHHHT---TC---CCCCTTTC-T-----THHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHHH---CC---CCCCCCCC-C-----HHHHHH
T ss_conf 332111124515788887654204520001344300112146359999981---89---88876667-3-----339999
Q ss_pred HHHHHHCCCEEEEEHHHH
Q ss_conf 999887398788726642
Q gi|254780923|r 339 SLSVKKANFRISDVDCIL 356 (365)
Q Consensus 339 ~~iv~~aGyri~~v~~~~ 356 (365)
.+-+..+|.+|.-+...+
T Consensus 204 ~~r~~~~g~~i~~~~~~l 221 (240)
T 3bcv_A 204 NVDVLANSNIVCVLPQTF 221 (240)
T ss_dssp HHHHHTTCSCEEECC---
T ss_pred HHHHHHHCCEEEEECCCE
T ss_conf 999998099899989988
No 7
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=24.52 E-value=32 Score=14.11 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=12.8
Q ss_pred HHHHHCHHHHCCCCEEEEECCCC
Q ss_conf 99750644526868899965686
Q gi|254780923|r 183 FLILLETEQLSNYDYVCKIHGKK 205 (365)
Q Consensus 183 fLv~~~~~~l~~YD~v~kiHTKK 205 (365)
|+...++.+++|-|+=.-+|+=|
T Consensus 49 ~v~~aREAlLdNIDlG~ely~WK 71 (126)
T 2rbg_A 49 LVTLIREALLENIDIGYELFLWK 71 (126)
T ss_dssp HHHHTHHHHHHTTTSEEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 99999999884345452899867
No 8
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=20.08 E-value=40 Score=13.57 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEE-CCCCCH----HHHHHHHHCHHHHCCCCEEEEECC
Q ss_conf 799999999818998318998086317999999852588379994-566731----789997506445268688999656
Q gi|254780923|r 129 LWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIFPAARIHIM-ENHGRD----VLPFLILLETEQLSNYDYVCKIHG 203 (365)
Q Consensus 129 Ll~Ei~~~L~~ip~~~DL~ITt~~~~~~~~~~i~~~~~~~~I~vv-~NRGRD----I~PfLv~~~~~~l~~YD~v~kiHT 203 (365)
|++-.++.+.....--+++|+|+++.. .. ...... +.+..- +.-.-| ...+...+. .....|+++-++.
T Consensus 30 Li~~~i~~~~~~~~~~~Iivstd~~~i--~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~iv~~~~ 103 (229)
T 1qwj_A 30 LIGWVLRAALDAGVFQSVWVSTDHDEI--EN-VAKQFG-AQVHRRSSETSKDSSTSLDAIVEFLN--YHNEVDIVGNIQA 103 (229)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEESCHHH--HH-HHHHTT-CEEEECCGGGSSTTCCHHHHHHHHHT--TCTTCSEEEEECT
T ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHH--CC-CHHCCC-CCCCCCCCCCCCCCCHHHHHHCCCCC--CCCCCCEEEECCC
T ss_conf 799999999966998879995440211--02-010258-51024435324663012222100002--3555788997236
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 867677777334478999999875599999999999986289648981
Q gi|254780923|r 204 KKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIG 251 (365)
Q Consensus 204 KKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~ 251 (365)
-|| +-+++.+.+.++.|.++..-.++.
T Consensus 104 -~~P--------------------~~~~~~I~~~i~~~~~~~~d~~~~ 130 (229)
T 1qwj_A 104 -TSP--------------------CLHPTDLQKVAEMIREEGYDSVFS 130 (229)
T ss_dssp -TCT--------------------TCCHHHHHHHHHHHHSSCCSEEEE
T ss_pred -CCC--------------------CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf -776--------------------578899999999998579977999
No 9
>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis}
Probab=19.93 E-value=37 Score=13.78 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=32.8
Q ss_pred HHHHHHCCC---CCCCHHEEEEEECCCCCHHHHHHHHHHH----CCCCCCCCH
Q ss_conf 868775186---8641101222101584012111134430----257667640
Q gi|254780923|r 45 LFYKRSKKL---CYDENYVVAYGSRSGKKFFAQSNLYMME----RELHFDGQR 90 (365)
Q Consensus 45 ~~~~~~~~~---~~~~~~~~~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~ 90 (365)
=+|++|+++ ++....++++-.-+|.||..|.|.|+.- +=+-|.|.|
T Consensus 38 ~~~~~y~gW~l~~~~~~~vvl~r~vdd~~P~~k~~~y~gi~~dG~vaIy~G~p 90 (140)
T 2bw2_A 38 DFWAAYAGWTLVEQKKGYVLFRKQMDDISPLSKVNGYIGVSDNGVISTFHGRP 90 (140)
T ss_dssp HHHHHSTTSEEEEEETTEEEEEEECSSCCTGGGTCCCEEEETTTEEEEBSSSC
T ss_pred HHHHHCCCCEEEECCCCEEEEEEEECCCCHHHHCCCEEEECCCCEEEEEECCC
T ss_conf 99846899789977899899999803369556507479873699899995588
No 10
>2rps_A Chemokine; peptide, immune system; NMR {Pseudaletia separata}
Probab=17.43 E-value=31 Score=14.21 Aligned_cols=12 Identities=25% Similarity=-0.034 Sum_probs=9.8
Q ss_pred EEEEECCCCCHH
Q ss_conf 222101584012
Q gi|254780923|r 61 VAYGSRSGKKFF 72 (365)
Q Consensus 61 ~~~~~r~~~~~~ 72 (365)
-|++.|+|+|+-
T Consensus 10 gm~mlrsgqc~~ 21 (32)
T 2rps_A 10 GMQMLRSGQCVA 21 (32)
T ss_dssp TEEECSSSCEEE
T ss_pred HHHHHHCCCCCC
T ss_conf 777865476325
Done!