Query         gi|254780923|ref|YP_003065336.1| hypothetical protein CLIBASIA_04110 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 365
No_of_seqs    111 out of 158
Neff          5.0 
Searched_HMMs 13730
Date          Wed Jun  1 10:46:20 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780923.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1qg8a_ c.68.1.1 (A:) Spore co  89.7    0.58 4.2E-05   23.2  11.6  114  116-254     1-126 (255)
  2 d1vkra_ c.44.2.1 (A:) PTS syst  42.4     9.3 0.00068   15.9   4.3   36  138-177    44-79  (97)
  3 d1xhba2 c.68.1.17 (A:95-422) P  23.6      19  0.0014   14.0  15.5  203  114-354    20-245 (328)
  4 d1wb9a4 d.75.2.1 (A:2-116) DNA  18.0      17  0.0013   14.3   0.8   53  305-358    45-98  (115)
  5 d1omza_ c.68.1.15 (A:) Alpha-1  17.1      27   0.002   13.1  11.3  163  116-313     3-169 (265)
  6 d2nqra3 c.57.1.2 (A:178-326) M  15.8      28   0.002   13.1   1.4   40  127-166    50-92  (149)
  7 d1ewqa4 d.75.2.1 (A:1-120) DNA  15.4      23  0.0017   13.6   0.9   31  326-357    70-100 (120)
  8 d1s1ma2 c.37.1.10 (A:1-266) CT  14.7      31  0.0023   12.8   3.3   52  157-209   123-180 (266)
  9 d1ny1a_ c.6.2.3 (A:) Probable   12.9      35  0.0025   12.5   3.7   31  329-360   204-234 (235)
 10 d1ik0a_ a.26.1.2 (A:) Interleu  12.1      23  0.0017   13.6   0.1   27  274-300     9-35  (113)

No 1  
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=89.65  E-value=0.58  Score=23.18  Aligned_cols=114  Identities=14%  Similarity=0.312  Sum_probs=68.2

Q ss_pred             CCEEEEEEEC-CHHHHHHHHHHHHHCCC-CCCEEEEECCCHHHHHHHHHHHC-CCCEEEEECCC---------CCHHHHH
Q ss_conf             7559999943-67779999999981899-83189980863179999998525-88379994566---------7317899
Q gi|254780923|r  116 AKIAIVVHLY-YIDLWIEIANLLSNLSI-SFDLHVTLVTESASIKSEILKIF-PAARIHIMENH---------GRDVLPF  183 (365)
Q Consensus       116 ~KIAV~lHly-Y~DLl~Ei~~~L~~ip~-~~DL~ITt~~~~~~~~~~i~~~~-~~~~I~vv~NR---------GRDI~Pf  183 (365)
                      |||.|++=.| ..+.+.++++-+.+-.. .+.++|--....... .++++.+ ....|+++.|.         +.-.+.-
T Consensus         1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a   79 (255)
T d1qg8a_           1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEET-LNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAAL   79 (255)
T ss_dssp             CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHH-HHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCC
T ss_conf             97999996279889999999999828899859999989897318-99999964301222111123454322321000012


Q ss_pred             HHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             97506445268688999656867677777334478999999875599999999999986289648981566
Q gi|254780923|r  184 LILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRA  254 (365)
Q Consensus       184 Lv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~  254 (365)
                      +..  .....+.|+|+.+++=                     .++ .++.++.++..|.++|++++++...
T Consensus        80 ~N~--gi~~a~g~~i~~lD~D---------------------d~~-~p~~l~~~~~~~~~~~~~~~v~~~~  126 (255)
T d1qg8a_          80 INQ--AIEMAEGEYITYATDD---------------------NIY-MPDRLLKMVRELDTHPEKAVIYSAS  126 (255)
T ss_dssp             HHH--HHHHCCCSEEEEEETT---------------------EEE-CTTHHHHHHHHHHHCTTCCEEEEEE
T ss_pred             CCC--CCCCCCCCCCCCCCCC---------------------CCC-CCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf             222--2234566634333665---------------------320-0255889999998498777686310


No 2  
>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component {Escherichia coli [TaxId: 562]}
Probab=42.44  E-value=9.3  Score=15.92  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=23.0

Q ss_pred             HHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             8189983189980863179999998525883799945667
Q gi|254780923|r  138 SNLSISFDLHVTLVTESASIKSEILKIFPAARIHIMENHG  177 (365)
Q Consensus       138 ~~ip~~~DL~ITt~~~~~~~~~~i~~~~~~~~I~vv~NRG  177 (365)
                      ..+|...|++||+    .++...+.+..+++.|..+.|-=
T Consensus        44 ~~~~~d~DlIvt~----~~l~~~~~~~~~~~~vi~v~n~l   79 (97)
T d1vkra_          44 NNLPPDVDLVITH----RDLTERAMRQVPQAQHISLTNFL   79 (97)
T ss_dssp             TCCCTTCSEEEEE----HHHHHHHHHHCTTSEEEEESCTT
T ss_pred             HHCCCCCCEEEEC----HHHHHHHHHHCCCCEEEEEEECC
T ss_conf             3388999899986----89999998438998499998468


No 3  
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.56  E-value=19  Score=14.00  Aligned_cols=203  Identities=10%  Similarity=0.003  Sum_probs=98.1

Q ss_pred             CCCCEEEEEEECC--HHHHHHHHHHHHHCCCCC---CEEEEEC--CC--HHHHHHHHHHHCC-CCEEEEE-CCCCCHHHH
Q ss_conf             2475599999436--777999999998189983---1899808--63--1799999985258-8379994-566731789
Q gi|254780923|r  114 IKAKIAIVVHLYY--IDLWIEIANLLSNLSISF---DLHVTLV--TE--SASIKSEILKIFP-AARIHIM-ENHGRDVLP  182 (365)
Q Consensus       114 ~k~KIAV~lHlyY--~DLl~Ei~~~L~~ip~~~---DL~ITt~--~~--~~~~~~~i~~~~~-~~~I~vv-~NRGRDI~P  182 (365)
                      .-|+|.|++=.|=  .+.+.++++.+.+-..+.   .|+|--+  ++  .+++..+..+..+ .+.|... +|.|. .++
T Consensus        20 ~~P~vSIIIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~-~~a   98 (328)
T d1xhba2          20 NLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGL-IRA   98 (328)
T ss_dssp             CCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCH-HHH
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHH
T ss_conf             9998899992267817999999999996477779729999979997035799999999856897099973244321-688


Q ss_pred             HHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC----
Q ss_conf             9975064452686889996568676777773344789999998755999999999999862896489815665443----
Q gi|254780923|r  183 FLILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYP----  258 (365)
Q Consensus       183 fLv~~~~~~l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~----  258 (365)
                      .=.++.   ..+-|+|+.+.+==-.                      .++.++.++..|++++..+.+.+......    
T Consensus        99 ~N~Gi~---~a~gd~i~flD~D~~~----------------------~p~~l~~l~~~~~~~~~~~v~~~~~~i~~~~~~  153 (328)
T d1xhba2          99 RLKGAA---VSRGQVITFLDAHCEC----------------------TAGWLEPLLARIKHDRRTVVCPIIDVISDDTFE  153 (328)
T ss_dssp             HHHHHH---HCCSSEEEEEESSEEE----------------------CTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCC
T ss_pred             HHHHHH---HHHCCEEEECCCCCCC----------------------CHHHHHHHHHHHHCCCCEEEECCEEEECCCCEE
T ss_conf             789998---6311002201765566----------------------736999999999638974774104466167602


Q ss_pred             --CCCCCC--CCCCHHH----HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf             --333234--4541022----89999999984899873326637701477329888878718997121865558888739
Q gi|254780923|r  259 --NKYCDY--TCSLGKN----REMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKNLRLSRYFEPKVHKALDGEI  330 (365)
Q Consensus       259 --~~~~~~--~~~wg~N----~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~dl~l~~~dFpeE~g~~DGTL  330 (365)
                        ......  ...|..+    .....+.....+....+....+..|.++-+|.+++..+=-.+   +.|.. .|.-|-- 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~vGgfD---e~~~~-~g~ED~D-  228 (328)
T d1xhba2         154 YMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYD---AGMDI-WGGENLE-  228 (328)
T ss_dssp             EECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCC---TTSCT-TCCCCSH-
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEECCEEEEEEHHHHHHHCCCC---CCCCC-CCCHHHH-
T ss_conf             215775333443312232224562454320234556663234132211132299999818999---87767-6756999-


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEHH
Q ss_conf             999999999998873987887266
Q gi|254780923|r  331 EHAVERCFSLSVKKANFRISDVDC  354 (365)
Q Consensus       331 aHAIERl~~~iv~~aGyri~~v~~  354 (365)
                             +.+-+.++|++|.-+-+
T Consensus       229 -------l~~R~~~~G~~i~~~p~  245 (328)
T d1xhba2         229 -------ISFRIWQCGGTLEIVTC  245 (328)
T ss_dssp             -------HHHHHHHTTCEEEEEEE
T ss_pred             -------HHHHHHHHCCEEEEECC
T ss_conf             -------99999980991999377


No 4  
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]}
Probab=17.96  E-value=17  Score=14.28  Aligned_cols=53  Identities=15%  Similarity=0.080  Sum_probs=34.0

Q ss_pred             HHHHHHCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHH
Q ss_conf             888787189971218-655588887399999999999988739878872664216
Q gi|254780923|r  305 ALDPIKNLRLSRYFE-PKVHKALDGEIEHAVERCFSLSVKKANFRISDVDCILGY  358 (365)
Q Consensus       305 AL~pL~dl~l~~~dF-peE~g~~DGTLaHAIERl~~~iv~~aGyri~~v~~~~g~  358 (365)
                      .+.+++++.+..... ...+.+.-|--.|++++-+.-.++ +||+|+-++|...-
T Consensus        45 ~~~~~L~i~lt~~~~~~~~~v~m~GfP~~~l~~yl~~Lv~-~G~kVai~eQ~~~~   98 (115)
T d1wb9a4          45 RASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVN-QGESVAICEQIGDP   98 (115)
T ss_dssp             HHHHHHTCCCEEECCSSSCCEEEEEEEGGGHHHHHHHHHH-TTCCEEEEEECSCG
T ss_pred             HHHHHHEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHH-CCCEEEEEEECCCC
T ss_conf             9876320588425778898637971678887899999997-89669999742574


No 5  
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.08  E-value=27  Score=13.15  Aligned_cols=163  Identities=9%  Similarity=0.016  Sum_probs=86.5

Q ss_pred             CCEEEEEEEC-CHHHHHHHHHHHHHCCCCCCEEEEEC---CCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCHHH
Q ss_conf             7559999943-67779999999981899831899808---6317999999852588379994566731789997506445
Q gi|254780923|r  116 AKIAIVVHLY-YIDLWIEIANLLSNLSISFDLHVTLV---TESASIKSEILKIFPAARIHIMENHGRDVLPFLILLETEQ  191 (365)
Q Consensus       116 ~KIAV~lHly-Y~DLl~Ei~~~L~~ip~~~DL~ITt~---~~~~~~~~~i~~~~~~~~I~vv~NRGRDI~PfLv~~~~~~  191 (365)
                      -|+.|++=.| -++.+.++++.+.+.+.+-.++|-..   ++..+...+.....+...++.-+|.|---+ .-.+++   
T Consensus         3 ~~~tvii~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~~~~g~~~a-~n~~~~---   78 (265)
T d1omza_           3 DSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRN-RLQVFP---   78 (265)
T ss_dssp             TCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGG-GGSCCT---
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHH---
T ss_conf             8689999727998999999999973899596999989899960999998753565389872378882345-425488---


Q ss_pred             HCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             26868899965686767777733447899999987559999999999998628964898156654433332344541022
Q gi|254780923|r  192 LSNYDYVCKIHGKKSKRKGYSWWEGDLWRRWLFYDLLGAPGVVFKIIRTFDTHRDIGMIGSRAYRYPNKYCDYTCSLGKN  271 (365)
Q Consensus       192 l~~YD~v~kiHTKKS~~~~~h~~~G~~WR~~Ll~~LLGs~~~V~~Il~~F~~np~lGlv~P~~~~~~~~~~~~~~~wg~N  271 (365)
                      ..+-|+|+.+.+=                     ..+ .++.++.++..++++|..+..+....................
T Consensus        79 ~a~ge~i~~lD~D---------------------~~~-~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  136 (265)
T d1omza_          79 EVETNAVLMVDDD---------------------TLI-SAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGIYSYGGFEL  136 (265)
T ss_dssp             TCCSSEEEEECTT---------------------EEE-CHHHHHHHHHHHTTSTTSEEESCEEEEEEEETTEEEEECTTS
T ss_pred             HCCCCEEEEECCC---------------------CCC-CHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             6896789996765---------------------577-879999999999858874221133200126776421244322


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCC
Q ss_conf             899999999848998733266377014773298888787189
Q gi|254780923|r  272 REMICTLAGRMGITFQDQKLDFFAGTMFWVRTEALDPIKNLR  313 (365)
Q Consensus       272 ~~~~~~L~~rlgi~~~~~~~~FpaGSMFW~Rp~AL~pL~dl~  313 (365)
                              .+.+. ..........|++..+|..+++......
T Consensus       137 --------~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~  169 (265)
T d1omza_         137 --------QTPGP-GNGDQYSMVLIGASFFNSKYLELFQKQP  169 (265)
T ss_dssp             --------CCCSS-SSSCCBSEECTTEEEEETHHHHHHHTSC
T ss_pred             --------CCCCC-CCCCCCCEECCCEEEECHHHHHHHHHHH
T ss_conf             --------45543-4455320002431685178999986627


No 6  
>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}
Probab=15.83  E-value=28  Score=13.05  Aligned_cols=40  Identities=13%  Similarity=0.008  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEC---CCHHHHHHHHHHHCC
Q ss_conf             7779999999981899831899808---631799999985258
Q gi|254780923|r  127 IDLWIEIANLLSNLSISFDLHVTLV---TESASIKSEILKIFP  166 (365)
Q Consensus       127 ~DLl~Ei~~~L~~ip~~~DL~ITt~---~~~~~~~~~i~~~~~  166 (365)
                      +|-.+++.+.+...-..+|++|||-   ....+...++++.+.
T Consensus        50 ~Dd~~~i~~~l~~~~~~~DivittGG~s~g~~D~~~~~l~~~G   92 (149)
T d2nqra3          50 RDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELG   92 (149)
T ss_dssp             CSSHHHHHHHHHHHHHHCSEEEECSSSCSSSCSHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf             8749999999874034558899807866781488999999759


No 7  
>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]}
Probab=15.39  E-value=23  Score=13.57  Aligned_cols=31  Identities=23%  Similarity=0.203  Sum_probs=24.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHH
Q ss_conf             88739999999999998873987887266421
Q gi|254780923|r  326 LDGEIEHAVERCFSLSVKKANFRISDVDCILG  357 (365)
Q Consensus       326 ~DGTLaHAIERl~~~iv~~aGyri~~v~~~~g  357 (365)
                      .-|--.|++|+-+.-.++ +||++.-++|...
T Consensus        70 maGfP~~~l~~yl~~L~~-~GytV~v~eQ~e~  100 (120)
T d1ewqa4          70 MAGIPLRAFEAYAERLLK-MGFRLAVADQVEP  100 (120)
T ss_dssp             EEEEEGGGHHHHHHHHHH-TTCCEEEEEECSC
T ss_pred             CCCCCHHHHHHHHHHHHH-CCCEEEEEEECCC
T ss_conf             026877578999999998-7945999987146


No 8  
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.66  E-value=31  Score=12.77  Aligned_cols=52  Identities=19%  Similarity=0.169  Sum_probs=31.5

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCHHH-----HHHHHHCHHHHC-CCCEEEEECCCCCCCC
Q ss_conf             9999985258837999456673178-----999750644526-8688999656867677
Q gi|254780923|r  157 IKSEILKIFPAARIHIMENHGRDVL-----PFLILLETEQLS-NYDYVCKIHGKKSKRK  209 (365)
Q Consensus       157 ~~~~i~~~~~~~~I~vv~NRGRDI~-----PfLv~~~~~~l~-~YD~v~kiHTKKS~~~  209 (365)
                      ++..+.+...+.+|.++| .|=-|+     |||.+++....+ +.+-+|++|--=-|+.
T Consensus       123 Ik~~I~~~~~~~Di~ivE-iGGTVGDIEs~pFlEAiRQl~~e~g~~n~~~iHvtlvP~l  180 (266)
T d1s1ma2         123 IKERVLEGGEGHDVVLVE-IGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYM  180 (266)
T ss_dssp             HHHHHHHHHTTCSEEEEE-ECSCTTSSTTHHHHHHHHHHHHHHCTTSEEEEEEEECCEE
T ss_pred             HHHHHHHCCCCCCEEEEE-CCCEECHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCEEE
T ss_conf             999998337788779996-2650000101549999999997629777899963241035


No 9  
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]}
Probab=12.88  E-value=35  Score=12.47  Aligned_cols=31  Identities=13%  Similarity=0.250  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHH
Q ss_conf             39999999999998873987887266421665
Q gi|254780923|r  329 EIEHAVERCFSLSVKKANFRISDVDCILGYRK  360 (365)
Q Consensus       329 TLaHAIERl~~~iv~~aGyri~~v~~~~g~~~  360 (365)
                      +.+.|+++++..+ ++.||++.+++..++..+
T Consensus       204 ~t~~aL~~lI~~l-k~~Gy~fvtl~ell~~~~  234 (235)
T d1ny1a_         204 DNAEALDDAITDL-KKQGYTFKSIDDLMFEKE  234 (235)
T ss_dssp             THHHHHHHHHHHH-HHHTCEEECHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH-HHCCCEEEEHHHHCCCCC
T ss_conf             0999999999999-978999988699405855


No 10 
>d1ik0a_ a.26.1.2 (A:) Interleukin-13 (IL-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.05  E-value=23  Score=13.59  Aligned_cols=27  Identities=26%  Similarity=0.409  Sum_probs=0.0

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf             999999984899873326637701477
Q gi|254780923|r  274 MICTLAGRMGITFQDQKLDFFAGTMFW  300 (365)
Q Consensus       274 ~~~~L~~rlgi~~~~~~~~FpaGSMFW  300 (365)
                      .+++|.+.+--..-+++..-..|||.|
T Consensus         9 aLkELIeeL~nitqnqkapLCNGSMVW   35 (113)
T d1ik0a_           9 ALRELIEELVNITQNQKAPLCNGSMVW   35 (113)
T ss_dssp             HHHHHHHHHHHHHHSCSSCSSSSCEEE
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf             999999999851655657666773588


Done!