RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780923|ref|YP_003065336.1| hypothetical protein
CLIBASIA_04110 [Candidatus Liberibacter asiaticus str. psy62]
         (365 letters)



>gnl|CDD|184645 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 430

 Score = 35.0 bits (81), Expect = 0.036
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 15/65 (23%)

Query: 115 KAKIAIVVH-------LYYIDLWIEIANLLSNLSISFDLHVTLVTESASIKSEILKIFPA 167
           K+ +  V+H       L+YI   ++ A      +IS D+HV L  +   IK  +L+ FP 
Sbjct: 17  KSSLPKVLHTICGKPMLFYI---LKEA-----FAISDDVHVVLHHQKERIKEAVLEYFPG 68

Query: 168 ARIHI 172
              H 
Sbjct: 69  VIFHT 73


>gnl|CDD|183011 PRK11171, PRK11171, hypothetical protein; Provisional.
          Length = 266

 Score = 28.7 bits (65), Expect = 2.1
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 11/42 (26%)

Query: 142 ISFDLHVTLVT--ESASIKSEILKIFPAARIHIMENHGRDVL 181
           + FD+HV +VT    ASI        P    H+ME HG  VL
Sbjct: 180 LRFDMHVNIVTFEPGASI--------PFVETHVME-HGLYVL 212


>gnl|CDD|118101 pfam09565, RE_NgoFVII, NgoFVII restriction endonuclease.  This
           family includes the NgoFVII (recognizes GCSGC but
           cleavage site unknown) restriction endonuclease.
          Length = 296

 Score = 28.2 bits (63), Expect = 4.0
 Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 128 DLWIEIANLLSNLSISFD--LHVTLVTESASIKSEILKIF--PAARIHIMENHGRDVLPF 183
           DL+  + + +  L ++ +  +   +V E  S  + I  +     + I ++ N G D   F
Sbjct: 128 DLYEFLLSNIVCLHVNIEDSIEPQIVIEYNSPLTTIAGVTGIADSTIQLLMNKGFDYS-F 186

Query: 184 LILLETEQLSNYDYVCKIHGKKSKRKGYSWWEGDL 218
            I L+  + SN ++   +  K  +RK  +W+E  +
Sbjct: 187 DIPLKVPESSNLNWSYGLARKNGQRKARNWYEAYI 221


>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein.  This family consists of
           bacterial MreB and Mbl proteins as well as two related
           archaeal sequences. MreB is known to be a rod
           shape-determining protein in bacteria and goes to make
           up the bacterial cytoskeleton. Genes coding for MreB/Mbl
           are only found in elongated bacteria, not in coccoid
           forms. It has been speculated that constituents of the
           eukaryotic cytoskeleton (tubulin, actin) may have
           evolved from prokaryotic precursor proteins closely
           related to today's bacterial proteins FtsZ and MreB/Mbl.
          Length = 327

 Score = 27.9 bits (63), Expect = 4.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 157 IKSEILKIFPAARIHIMENHGRDV---LPFLILLETEQLSN 194
           IK EI   +P      ME  GRD+   LP  I + +E++  
Sbjct: 204 IKIEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEISSEEVRE 244


>gnl|CDD|163612 pfam11885, DUF3405, Protein of unknown function (DUF3405).  This
           family of proteins are functionally uncharacterized.
           This protein is found in bacteria and eukaryotes.
           Proteins in this family are typically between 636 to 810
           amino acids in length.
          Length = 488

 Score = 27.0 bits (60), Expect = 7.9
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 203 GKKSKRKGYSWW-----EGDLWRRWLFYDLLGAPGVVFKI 237
            ++   +G SW+       +L+RRWL Y + G  G  +++
Sbjct: 431 DREHNFRGTSWYYRAGFARNLYRRWLGYKVDGDGGREWEL 470


>gnl|CDD|165335 PHA03042, PHA03042, CD47-like protein; Provisional.
          Length = 286

 Score = 26.6 bits (59), Expect = 9.7
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 107 GKVMQIAIK-AKIAIVVHLYYIDLWIEIANLLSNLSISFD 145
           G ++ +  K  K+  +++LY I +WI +  L+    I  +
Sbjct: 130 GTIITLTFKINKLKKIIYLYAISIWITLIMLVGQYMIGLN 169


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.327    0.141    0.458 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,098,032
Number of extensions: 390323
Number of successful extensions: 862
Number of sequences better than 10.0: 1
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 14
Length of query: 365
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 270
Effective length of database: 3,941,713
Effective search space: 1064262510
Effective search space used: 1064262510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.1 bits)