RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780923|ref|YP_003065336.1| hypothetical protein
CLIBASIA_04110 [Candidatus Liberibacter asiaticus str. psy62]
         (365 letters)



>d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase
           {Haemophilus influenzae [TaxId: 727]}
          Length = 357

 Score = 28.2 bits (62), Expect = 1.2
 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 28/151 (18%)

Query: 2   PVSGCSKGYFLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWTLFYKRSKKLCYDENYVV 61
           P  G S    L    +++    +  F     +    +  +F              E+Y+ 
Sbjct: 203 PDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQV------------ESYLS 250

Query: 62  AYGSRSGKKFFAQSNLYMMERELHFDGQRIHHFPQLLHGWESPAMGKVMQIAIKAKIAIV 121
             G +  ++F A S L+++     +D                  + + +   IKA+  +V
Sbjct: 251 YQGKKFLERFDANSYLHLLRALDMYD-----------PSLGYENVKEALS-RIKARYTLV 298

Query: 122 V----HLYYIDLWIEIANLLSNLSISFDLHV 148
                 L+      +   LL    +    + 
Sbjct: 299 SVTTDQLFKPIDLYKSKQLLEQSGVDLHFYE 329


>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016)
           {Bacillus anthracis [TaxId: 1392]}
          Length = 244

 Score = 26.2 bits (56), Expect = 4.1
 Identities = 14/140 (10%), Positives = 33/140 (23%), Gaps = 3/140 (2%)

Query: 11  FLFTSHFKSWNFYSDHFNIEKVNLWGGFFFWFWTLFYKRSKKLCYDENYVVAYGSRSGKK 70
              +   +       +   E + +      +  T+       +       +   S     
Sbjct: 99  GFHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMRITAGNDIVVYSADSSY 158

Query: 71  FFAQSNLYMMERELHFDGQRIHHFPQLLHGWESPAMGKVMQIAIKAKIAIVVHLYYIDLW 130
                           +     H      G  +      +      K  ++ HL +    
Sbjct: 159 IPEFIPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASIAKDANVKELLLTHLPH---T 215

Query: 131 IEIANLLSNLSISFDLHVTL 150
              A+L++     F  H+TL
Sbjct: 216 GNPADLVTEAKQIFSGHITL 235


>d1gkga2 g.18.1.1 (A:1023-1092) Complement receptor 1, cr1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 70

 Score = 25.9 bits (56), Expect = 4.9
 Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 1/41 (2%)

Query: 249 MIGSRAYRYP-NKYCDYTCSLGKNREMICTLAGRMGITFQD 288
            I +    +       Y C+LG     +  L G   I    
Sbjct: 14  FISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTS 54


>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus
           subtilis [TaxId: 1423]}
          Length = 372

 Score = 26.1 bits (57), Expect = 4.9
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 142 ISFDLHVTLVTESASIKSEILK-----IFPAARIHIMENHGRDVLPFLILLETE 190
           IS    +T+       ++   +       P A  H +EN G + L FL + + +
Sbjct: 278 ISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDD 331


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.458 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,521,418
Number of extensions: 74575
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 15
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)