HHsearch alignment for GI: 254780924 and conserved domain: COG0786
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism].
Probab=97.19 E-value=0.016 Score=34.12 Aligned_cols=273 Identities=16% Similarity=0.112 Sum_probs=132.5
Q ss_pred HHHHCCCCHH-HHHHHHHHHHCCHHCCCCCCHHHHHH-HHHHHHHHHHH-HHHHCCCHHHHHHHCCHHHHHHHHHHHHH-
Q ss_conf 9987088867-99999999627410385584789999-99999999998-82541688999841515889989999999-
Q gi|254780924|r 17 IANRCRLPTL-IGYLVAGILVGPRTPGFVASQSLVPA-LAEIGIILLMF-GVGLHFSVKDLISVRGIALPGALIQIILG- 92 (609)
Q Consensus 17 la~rl~lP~i-~~~il~GillGp~~l~~i~~~~~l~~-l~~lgl~~llF-~~Gleld~~~l~~~~~~~~~~~~~~~~~~- 92 (609)
T Consensus 30 fl~k~~IPepVvgG~i-~a~l~~~~~~~~~~~~~fd~~l~~~-fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~ 107 (404)
T COG0786 30 FLKKYCIPEPVVGGLI-FAILLLLLHGFGGVSLNFDTSLQDV-FMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAV 107 (404)
T ss_pred HHHHCCCCCCHHHHHH-HHHHHHHHHHCCEEEEECCCCCCCH-HHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 9988079850387799-9999999976035998677654359-9999999702103616788567448999999999999
Q ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf --9999999999678868999999999742--3899-9987656554114405789899877778999999999986134
Q gi|254780924|r 93 --TALGALMGMVMGWSLGGSVVFGLALSIA--STVV-LLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATN 167 (609)
Q Consensus 93 --~~~~~~~~~~lg~~~~~all~g~~l~~t--s~~v-v~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~ 167 (609)
T Consensus 108 ~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~~f~~~G~~~A--~~va~A~A-------------------- 165 (404)
T COG0786 108 LQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGPTFEDLGAEGA--TEVAMASA-------------------- 165 (404)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCCCH--HHHHHHHH--------------------
T ss_conf 98779999999748547889872561104778417887788985699626--89999999--------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH------------------HHHHCCC
Q ss_conf 4433013567899998876532101479999999841010000100034454387------------------7642035
Q gi|254780924|r 168 YSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWI------------------LHMIFYT 229 (609)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~ 229 (609)
T Consensus 166 ---------------------------------TfGlv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (404)
T COG0786 166 ---------------------------------TFGLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKST 212 (404)
T ss_pred ---------------------------------HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHCCCCC
T ss_conf ---------------------------------89888767507288999999569899988772232001554222100
Q ss_pred --CCHH--HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf --6736--8999999999999998887411-----00246666642220276145----689999976689999999988
Q gi|254780924|r 230 --GSRE--LFRLGVLAIALGFAYGSSKLFG-----VSLSLGAFFAGMILAESELS----QSAAQESLPLRDAFSVLFFIS 296 (609)
Q Consensus 230 --~~~~--~~~~~~l~~~~~~~~~~~~~~g-----~s~~lgaf~aG~~l~~~~~~----~~~~~~~~~~~~~~~~~fFv~ 296 (609)
T Consensus 213 ~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflam 292 (404)
T COG0786 213 RLITAEPLIETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAM 292 (404)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 40008889999999999999999999998633524447999999999998799883756455888878746789999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 653114798862025677776555-42212232110002558799999986
Q gi|254780924|r 297 VGMMFNPDILISNPILLMMAVIIV-IIGKALIAFIVVIAFGRSVATALTIA 346 (609)
Q Consensus 297 iG~~l~~~~l~~~~~~~l~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~~g 346 (609)
T Consensus 293 ALmSlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~ 343 (404)
T COG0786 293 ALMSLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAA 343 (404)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 999899999973164178999999999999999998987471453898842