HHsearch alignment for GI: 254780924 and conserved domain: COG2855
>COG2855 Predicted membrane protein [Function unknown].
Probab=98.25 E-value=0.00042 Score=45.08 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=83.0
Q ss_pred HHHHHHHH--HHHCCCCHHHHHHHHHHHHCCHHCCCCCCHH----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHH
Q ss_conf 99999999--9870888679999999962741038558478----99999999999999882541688999841515889
Q gi|254780924|r 10 LAFIFGAI--ANRCRLPTLIGYLVAGILVGPRTPGFVASQS----LVPALAEIGIILLMFGVGLHFSVKDLISVRGIALP 83 (609)
Q Consensus 10 ~a~i~g~l--a~rl~lP~i~~~il~GillGp~~l~~i~~~~----~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~ 83 (609)
T Consensus 22 ~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLl----G~~ltl~~i~~~G~~~v~ 97 (334)
T COG2855 22 LAMLLGAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLL----GFRLTLSDIADVGGSGVL 97 (334)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHH----CCEEEHHHHHHCCCCHHH
T ss_conf 9999853477752585178999999999850023403525620013887999999998----360139999872711799
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_conf 98999999999999999996788689999999997423899---998765
Q gi|254780924|r 84 GALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIASTVV---LLKALQ 130 (609)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~lg~~~~~all~g~~l~~ts~~v---v~~~l~ 130 (609)
T Consensus 98 ~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvik 147 (334)
T COG2855 98 IIAITLSSTFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIK 147 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999995998878999980211547999998387678