HHsearch alignment for GI: 254780924 and conserved domain: PRK09561
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed.
Probab=98.63 E-value=3.4e-05 Score=52.63 Aligned_cols=262 Identities=15% Similarity=0.163 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHH----HHHCCHH--HHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHH
Q ss_conf 9999999999999882541688999----8415158--899899999999999999999-----6788689999999997
Q gi|254780924|r 50 VPALAEIGIILLMFGVGLHFSVKDL----ISVRGIA--LPGALIQIILGTALGALMGMV-----MGWSLGGSVVFGLALS 118 (609)
Q Consensus 50 l~~l~~lgl~~llF~~Gleld~~~l----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----lg~~~~~all~g~~l~ 118 (609)
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGm~vPAlIY~~~n~~~~~~~~GW~I---------P~ 130 (388)
T PRK09561 60 LLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADPITREGWAI---------PA 130 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC---------CC
T ss_conf 999865799999999999999998738779878988789999805509899897410588542356342---------35
Q ss_pred HHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4238999987656554-114405789899877778999999999986134443301356789999887653210147999
Q gi|254780924|r 119 IASTVVLLKALQENRI-LETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLI 197 (609)
Q Consensus 119 ~ts~~vv~~~l~~~~~-~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (609)
T Consensus 131 ATDIAFAlgvLallg~rvP~~lrvFLlaLAIvDDlgAIlVIAiFY---t~~i~-~~----------------------~L 184 (388)
T PRK09561 131 ATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFY---TNDLS-MA----------------------SL 184 (388)
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEC---CCCCC-HH----------------------HH
T ss_conf 205999999999955668879999999999986311124667530---78866-99----------------------99
Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----
Q ss_conf 999984101000010003445438776420356736899999999999999888741100246666642220276-----
Q gi|254780924|r 198 MITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAES----- 272 (609)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~----- 272 (609)
T Consensus 185 ~~a~~----~~~~l~~---------ln~~-~v~~~~~Y~~lG~~-----lW~~~~~SGvHaTiAGV~la~~iP~~~~~~~ 245 (388)
T PRK09561 185 GVAAV----AIAVLAV---------LNLC-GVRRTGVYILVGVV-----LWTAVLKSGVHATLAGVIVGFFIPLKEKHGR 245 (388)
T ss_pred HHHHH----HHHHHHH---------HHHC-CCCCHHHHHHHHHH-----HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999----9999999---------9984-99614799999999-----9999985045189998999950366655678
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCC----------CCCH
Q ss_conf 14568999997668999999998865311479--8862-025677776555422122321100025----------5879
Q gi|254780924|r 273 ELSQSAAQESLPLRDAFSVLFFISVGMMFNPD--ILIS-NPILLMMAVIIVIIGKALIAFIVVIAF----------GRSV 339 (609)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~--~l~~-~~~~~l~~~~~~~~~k~~~~~~~~~~~----------~~~~ 339 (609)
T Consensus 246 sp~~rleh~l~p~v~~~ilPlFAfaNAGV~l~~~~~~~l~~~v~lGI~~GL~iGK~lGI~~~~~la~kl~~a~lP~~~~w 325 (388)
T PRK09561 246 SPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTY 325 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 96999998751047889889999850475646663776417489999999981642879999999998276779999988
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999864321220256788988764
Q gi|254780924|r 340 ATALTIAASLSQIGEFSFILANLGVE 365 (609)
Q Consensus 340 ~~~~~~g~~l~~~g~~~~v~a~~a~~ 365 (609)
T Consensus 326 ~~l~gv~~LaGIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 326 QQIMAVGILCGIGFTMSIFIASLAFG 351 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999988889999999985268