HHsearch alignment for GI: 254780924 and conserved domain: PRK09836

>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=95.79  E-value=0.089  Score=29.08  Aligned_cols=95  Identities=20%  Similarity=0.181  Sum_probs=62.9

Q ss_pred             CEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             0899719989999999----76992999789998999848931467999935996-899999999999589880899946
Q gi|254780924|r  473 ALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSISTA-FEAAYITQEARNSNPSILIIALAD  547 (609)
Q Consensus       473 ~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~  547 (609)
T Consensus         2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~-~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lta   80 (226)
T PRK09836          2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLAD-NGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA   80 (226)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf             899993999999999999987899999989-9999999985189999998899999987204356776167960999944


Q ss_pred             CHHHHH--HHHHCCCCEEECHHH
Q ss_conf             989999--999769987876589
Q gi|254780924|r  548 SDSEVE--HLTRYGADTVVMSAR  568 (609)
Q Consensus       548 ~~~~~~--~l~~~Ga~~vi~p~~  568 (609)
T Consensus        81 ~~~~~d~i~~l~~GADDYl~KPf  103 (226)
T PRK09836         81 LGTIEHRVKGLELGADDYLVKPF  103 (226)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCC
T ss_conf             58988999999769968863687