HHsearch alignment for GI: 254780924 and conserved domain: PRK09836
>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=95.79 E-value=0.089 Score=29.08 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=62.9
Q ss_pred CEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0899719989999999----76992999789998999848931467999935996-899999999999589880899946
Q gi|254780924|r 473 ALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSISTA-FEAAYITQEARNSNPSILIIALAD 547 (609)
Q Consensus 473 ~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~ 547 (609)
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~-~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lta 80 (226)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLAD-NGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA 80 (226)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 899993999999999999987899999989-9999999985189999998899999987204356776167960999944
Q ss_pred CHHHHH--HHHHCCCCEEECHHH
Q ss_conf 989999--999769987876589
Q gi|254780924|r 548 SDSEVE--HLTRYGADTVVMSAR 568 (609)
Q Consensus 548 ~~~~~~--~l~~~Ga~~vi~p~~ 568 (609)
T Consensus 81 ~~~~~d~i~~l~~GADDYl~KPf 103 (226)
T PRK09836 81 LGTIEHRVKGLELGADDYLVKPF 103 (226)
T ss_pred CCCHHHHHHHHHCCCCEEEECCC
T ss_conf 58988999999769968863687