HHsearch alignment for GI: 254780924 and conserved domain: PRK09935
>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=94.63 E-value=0.27 Score=25.75 Aligned_cols=109 Identities=7% Similarity=0.111 Sum_probs=56.8
Q ss_pred CCEEEECCCHHHHHHHHH-----CCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 908997199899999997-----699299978999899984893146799993599-68999999999995898808999
Q gi|254780924|r 472 IALLVIEDSEKKIEELRS-----LGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSNPSILIIAL 545 (609)
Q Consensus 472 ~~v~vid~~~~~~~~~~~-----~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~~~~~iia~ 545 (609)
T Consensus 4 ~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~p~~~ilvl 83 (210)
T PRK09935 4 ASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQETVKVLFL 83 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 88999859699999999999629892899998999999999974799999988999998864056789873899708997
Q ss_pred ECC--HHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHH
Q ss_conf 469--899999997699878765899999999998742
Q gi|254780924|r 546 ADS--DSEVEHLTRYGADTVVMSAREIALGMLDRLNQV 581 (609)
Q Consensus 546 ~~~--~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~ 581 (609)
T Consensus 84 s~~~~~~~~~~a~~~Ga~g~l~K~~-~~~~l~~ai~~v 120 (210)
T PRK09935 84 SSKSECFYAGRAIRAGANGFVSKRK-DLNDIYNAVQMI 120 (210)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHH
T ss_conf 1767299999999668776886789-999999999999