HHsearch alignment for GI: 254780924 and conserved domain: PRK09935

>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=94.63  E-value=0.27  Score=25.75  Aligned_cols=109  Identities=7%  Similarity=0.111  Sum_probs=56.8

Q ss_pred             CCEEEECCCHHHHHHHHH-----CCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             908997199899999997-----699299978999899984893146799993599-68999999999995898808999
Q gi|254780924|r  472 IALLVIEDSEKKIEELRS-----LGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSNPSILIIAL  545 (609)
Q Consensus       472 ~~v~vid~~~~~~~~~~~-----~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~~~~~iia~  545 (609)
T Consensus         4 ~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~p~~~ilvl   83 (210)
T PRK09935          4 ASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQETVKVLFL   83 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf             88999859699999999999629892899998999999999974799999988999998864056789873899708997


Q ss_pred             ECC--HHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHH
Q ss_conf             469--899999997699878765899999999998742
Q gi|254780924|r  546 ADS--DSEVEHLTRYGADTVVMSAREIALGMLDRLNQV  581 (609)
Q Consensus       546 ~~~--~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~  581 (609)
T Consensus        84 s~~~~~~~~~~a~~~Ga~g~l~K~~-~~~~l~~ai~~v  120 (210)
T PRK09935         84 SSKSECFYAGRAIRAGANGFVSKRK-DLNDIYNAVQMI  120 (210)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHH
T ss_conf             1767299999999668776886789-999999999999