HHsearch alignment for GI: 254780924 and conserved domain: PRK09958
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional.
Probab=94.03 E-value=0.36 Score=24.89 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCEEEECCCHHHHHHHHH----CCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHH-HHHHHHHHHHCCCCEEEEEE
Q ss_conf 908997199899999997----6992999789998999848931467999935996899-99999999958988089994
Q gi|254780924|r 472 IALLVIEDSEKKIEELRS----LGIDVIYGNATITKILLMANIEKARSLVVSISTAFEA-AYITQEARNSNPSILIIALA 546 (609)
Q Consensus 472 ~~v~vid~~~~~~~~~~~----~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n-~~~~~~~~~~~~~~~iia~~ 546 (609)
T Consensus 1 m~vlivDDh~lvr~gl~~ll~~~~~~vv~~~~~~~~~l~~~~~~~pDvvllDl~lp~~~G~~~~~~ir~~~~~~~viv~s 80 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 80 (204)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 98999869899999999999868998999979999999998743979999958999998416788898727980599997
Q ss_pred --CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf --698999999976998787658999999999987421002
Q gi|254780924|r 547 --DSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHHEK 585 (609)
Q Consensus 547 --~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~~~~~ 585 (609)
T Consensus 81 ~~~~~~~~~~a~~~Ga~g~l~K~~-~~~~l~~aI~~v~~G~ 120 (204)
T PRK09958 81 AKNDHFYGKHCADAGANGFVSKKE-GMNNIIAAIEAAKNGY 120 (204)
T ss_pred CCCCCHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHCCC
T ss_conf 246521144335268637997899-9999999999997799