HHsearch alignment for GI: 254780924 and conserved domain: PRK10403
>PRK10403 transcriptional regulator NarP; Provisional.
Probab=94.98 E-value=0.22 Score=26.34 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=59.9
Q ss_pred CCCEEEECCCHHHHHHHHH-----CCCCEEECCCCCHHHHHHCCHHHCCEEEEECC-CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9908997199899999997-----69929997899989998489314679999359-96899999999999589880899
Q gi|254780924|r 471 GIALLVIEDSEKKIEELRS-----LGIDVIYGNATITKILLMANIEKARSLVVSIS-TAFEAAYITQEARNSNPSILIIA 544 (609)
Q Consensus 471 ~~~v~vid~~~~~~~~~~~-----~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~-~~~~n~~~~~~~~~~~~~~~iia 544 (609)
T Consensus 6 pirIlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~~~~~~~~~~~pDlvllD~~lp~~~G~~~~~~l~~~~p~~~iiv 85 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIII 85 (215)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCEEE
T ss_conf 75799983989999999999975899289999899999999986449989998089989987412335654188773688
Q ss_pred EE--CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHH
Q ss_conf 94--6989999999769987876589999999999874
Q gi|254780924|r 545 LA--DSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQ 580 (609)
Q Consensus 545 ~~--~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~ 580 (609)
T Consensus 86 lt~~~~~~~~~~al~~Ga~gyl~K~~-~~~~l~~ai~~ 122 (215)
T PRK10403 86 LTVSDASSDIFALIDAGADGYLLKDS-DPEVLLEAIRA 122 (215)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHH
T ss_conf 63243236789987468766884899-99999999999