HHsearch alignment for GI: 254780924 and conserved domain: PRK10693
>PRK10693 response regulator of RpoS; Provisional.
Probab=96.83 E-value=0.034 Score=31.95 Aligned_cols=97 Identities=15% Similarity=0.280 Sum_probs=67.6
Q ss_pred CCCCEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7990899719989999999----7699299978999899984893146799993599-6899999999999589880899
Q gi|254780924|r 470 AGIALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSNPSILIIA 544 (609)
Q Consensus 470 ~~~~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~~~~~iia 544 (609)
T Consensus 6 ~gkkILIVDDd~~~r~~l~~~L~~~G~~V~~A~-nG~eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIv 84 (337)
T PRK10693 6 VGKQILIVEDEPVFRSLLDSWFSSLGATTVLAA-DGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLV 84 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 899899994999999999999997899999989-9999999986589999999689999998999999998589964999
Q ss_pred EECCH--HHHHHHHHCCCCEEECHH
Q ss_conf 94698--999999976998787658
Q gi|254780924|r 545 LADSD--SEVEHLTRYGADTVVMSA 567 (609)
Q Consensus 545 ~~~~~--~~~~~l~~~Ga~~vi~p~ 567 (609)
T Consensus 85 lTa~~~~~d~v~al~~GA~DyL~KP 109 (337)
T PRK10693 85 ISATENMADIAKALRLGVEDVLLKP 109 (337)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECC
T ss_conf 9868999999999974995899789