HHsearch alignment for GI: 254780924 and conserved domain: PRK10693

>PRK10693 response regulator of RpoS; Provisional.
Probab=96.83  E-value=0.034  Score=31.95  Aligned_cols=97  Identities=15%  Similarity=0.280  Sum_probs=67.6

Q ss_pred             CCCCEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             7990899719989999999----7699299978999899984893146799993599-6899999999999589880899
Q gi|254780924|r  470 AGIALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSNPSILIIA  544 (609)
Q Consensus       470 ~~~~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~~~~~iia  544 (609)
T Consensus         6 ~gkkILIVDDd~~~r~~l~~~L~~~G~~V~~A~-nG~eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIv   84 (337)
T PRK10693          6 VGKQILIVEDEPVFRSLLDSWFSSLGATTVLAA-DGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLV   84 (337)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             899899994999999999999997899999989-9999999986589999999689999998999999998589964999


Q ss_pred             EECCH--HHHHHHHHCCCCEEECHH
Q ss_conf             94698--999999976998787658
Q gi|254780924|r  545 LADSD--SEVEHLTRYGADTVVMSA  567 (609)
Q Consensus       545 ~~~~~--~~~~~l~~~Ga~~vi~p~  567 (609)
T Consensus        85 lTa~~~~~d~v~al~~GA~DyL~KP  109 (337)
T PRK10693         85 ISATENMADIAKALRLGVEDVLLKP  109 (337)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECC
T ss_conf             9868999999999974995899789