HHsearch alignment for GI: 254780924 and conserved domain: PRK10816
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional.
Probab=94.41 E-value=0.21 Score=26.54 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=58.7
Q ss_pred CEEEECCCHHHHH----HHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0899719989999----99976992999789998999848931467999935996-899999999999589880899946
Q gi|254780924|r 473 ALLVIEDSEKKIE----ELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA-FEAAYITQEARNSNPSILIIALAD 547 (609)
Q Consensus 473 ~v~vid~~~~~~~----~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~ 547 (609)
T Consensus 2 kILivEdd~~~~~~l~~~L~~~g~~V~~a~-~~~~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~~~~piI~lta 80 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAE-DAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCEEEEEC
T ss_conf 899995989999999999997899999989-9999999997579989999799989886400120110489876899944
Q ss_pred CHHHH--HHHHHCCCCEEECHHH
Q ss_conf 98999--9999769987876589
Q gi|254780924|r 548 SDSEV--EHLTRYGADTVVMSAR 568 (609)
Q Consensus 548 ~~~~~--~~l~~~Ga~~vi~p~~ 568 (609)
T Consensus 81 ~~~~~~~~~al~~Gaddyl~KP~ 103 (223)
T PRK10816 81 RESWQDKVEVLSAGADDYVTKPF 103 (223)
T ss_pred CCCHHHHHHHHHCCCCEEECCCC
T ss_conf 45677899999869988641897