HHsearch alignment for GI: 254780924 and conserved domain: PRK13856
>PRK13856 two-component response regulator VirG; Provisional.
Probab=95.32 E-value=0.18 Score=27.00 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=64.9
Q ss_pred CCEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 90899719989999999----7699299978999899984893146799993599-689999999999958988089994
Q gi|254780924|r 472 IALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 472 ~~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~~~~~iia~~ 546 (609)
T Consensus 2 ~~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~-~~~~~~~~l~~~~~DlvIlDi~lp~~~Gl~~~~~ir~~~~~-piiilt 79 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVA-DSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATKSDV-PIIIIS 79 (241)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCCCC-CEEEEE
T ss_conf 9899996989999999999987799999989-99999999865999999996999876613455564036997-369997
Q ss_pred C---CHHHHHHHHHCCCCEEECHHHHHHH
Q ss_conf 6---9899999997699878765899999
Q gi|254780924|r 547 D---SDSEVEHLTRYGADTVVMSAREIAL 572 (609)
Q Consensus 547 ~---~~~~~~~l~~~Ga~~vi~p~~~~a~ 572 (609)
T Consensus 80 ~~~~~~~d~i~~l~~GADDYl~KPf~~~E 108 (241)
T PRK13856 80 GDRLEEADKVVALELGATDFIAKPFGTRE 108 (241)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 26787899999987699889977767779