HHsearch alignment for GI: 254780924 and conserved domain: TIGR00946

>TIGR00946 2a69 Auxin Efflux Carrier; InterPro: IPR014024 This entry is mostly composed of known or predicted PIN proteins from plants, though some homologous prokaryotic proteins are also included. The PIN proteins are components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells , . Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments..
Probab=96.56  E-value=0.051  Score=30.71  Aligned_cols=137  Identities=18%  Similarity=0.201  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1002466666422202------7614568999997668999999998865--3114798862025677776555422122
Q gi|254780924|r  255 GVSLSLGAFFAGMILA------ESELSQSAAQESLPLRDAFSVLFFISVG--MMFNPDILISNPILLMMAVIIVIIGKAL  326 (609)
Q Consensus       255 g~s~~lgaf~aG~~l~------~~~~~~~~~~~~~~~~~~~~~~fFv~iG--~~l~~~~l~~~~~~~l~~~~~~~~~k~~  326 (609)
T Consensus       458 ~~~P~~~~~Lls~il~lv~~~~n~~~P~~~~~s~~~Ls~a~~p~alfslGlfl~L~~~~~~~~~~~~~~a~~~rf~~~Pa  537 (608)
T TIGR00946       458 IRFPPLIASLLSLILSLVGFKWNFTMPGLILKSISILSGAALPMALFSLGLFLALQPRKLKLGVADAILALIVRFLVGPA  537 (608)
T ss_pred             HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             32542689999999999861146604789999987532789999999999999753568762414899999999999999


Q ss_pred             HHHHHHCCCC--CCHHHH--HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3211000255--879999--99864321220256788988764178786687787788899999999999867
Q gi|254780924|r  327 IAFIVVIAFG--RSVATA--LTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVLA  395 (609)
Q Consensus       327 ~~~~~~~~~~--~~~~~~--~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~~~  395 (609)
T Consensus       538 ~~~~~~~~~GGsl~g~~~~vai~~aA~P~----~~v~~Vla~~y~~d~~~~~~~~~~s~~lsL~~~p~~~~ll  606 (608)
T TIGR00946       538 VMAVISKLIGGSLRGLELSVAIVQAALPQ----GIVAAVLAKEYEVDVELASTAVILSTVLSLLVLPLYIILL  606 (608)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999726544227899999998355----6889887654056788998899999999999999999997