HHsearch alignment for GI: 254780924 and conserved domain: TIGR00946
>TIGR00946 2a69 Auxin Efflux Carrier; InterPro: IPR014024 This entry is mostly composed of known or predicted PIN proteins from plants, though some homologous prokaryotic proteins are also included. The PIN proteins are components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells , . Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments..
Probab=96.56 E-value=0.051 Score=30.71 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1002466666422202------7614568999997668999999998865--3114798862025677776555422122
Q gi|254780924|r 255 GVSLSLGAFFAGMILA------ESELSQSAAQESLPLRDAFSVLFFISVG--MMFNPDILISNPILLMMAVIIVIIGKAL 326 (609)
Q Consensus 255 g~s~~lgaf~aG~~l~------~~~~~~~~~~~~~~~~~~~~~~fFv~iG--~~l~~~~l~~~~~~~l~~~~~~~~~k~~ 326 (609)
T Consensus 458 ~~~P~~~~~Lls~il~lv~~~~n~~~P~~~~~s~~~Ls~a~~p~alfslGlfl~L~~~~~~~~~~~~~~a~~~rf~~~Pa 537 (608)
T TIGR00946 458 IRFPPLIASLLSLILSLVGFKWNFTMPGLILKSISILSGAALPMALFSLGLFLALQPRKLKLGVADAILALIVRFLVGPA 537 (608)
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 32542689999999999861146604789999987532789999999999999753568762414899999999999999
Q ss_pred HHHHHHCCCC--CCHHHH--HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3211000255--879999--99864321220256788988764178786687787788899999999999867
Q gi|254780924|r 327 IAFIVVIAFG--RSVATA--LTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVLA 395 (609)
Q Consensus 327 ~~~~~~~~~~--~~~~~~--~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~~~ 395 (609)
T Consensus 538 ~~~~~~~~~GGsl~g~~~~vai~~aA~P~----~~v~~Vla~~y~~d~~~~~~~~~~s~~lsL~~~p~~~~ll 606 (608)
T TIGR00946 538 VMAVISKLIGGSLRGLELSVAIVQAALPQ----GIVAAVLAKEYEVDVELASTAVILSTVLSLLVLPLYIILL 606 (608)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999726544227899999998355----6889887654056788998899999999999999999997