HHsearch alignment for GI: 254780924 and conserved domain: TIGR00946
>TIGR00946 2a69 Auxin Efflux Carrier; InterPro: IPR014024 This entry is mostly composed of known or predicted PIN proteins from plants, though some homologous prokaryotic proteins are also included. The PIN proteins are components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells , . Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments..
Probab=96.05 E-value=0.096 Score=28.84 Aligned_cols=125 Identities=14% Similarity=0.258 Sum_probs=78.6
Q ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHCCHHCCC---CCC--HHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHCCHHHH
Q ss_conf 9999999870-8886799999999627410385---584--78999999999999998825--41688999841515889
Q gi|254780924|r 12 FIFGAIANRC-RLPTLIGYLVAGILVGPRTPGF---VAS--QSLVPALAEIGIILLMFGVG--LHFSVKDLISVRGIALP 83 (609)
Q Consensus 12 ~i~g~la~rl-~lP~i~~~il~GillGp~~l~~---i~~--~~~l~~l~~lgl~~llF~~G--leld~~~l~~~~~~~~~ 83 (609)
T Consensus 448 ~~l~~~~k~~~~~P~~~~~Ll-s~il~lv~~~~n~~~P~~~~~s~~~Ls~a~~p~alfslGlfl~L~~~~~~~~~~~~~~ 526 (608)
T TIGR00946 448 LILIMVWKKLIRFPPLIASLL-SLILSLVGFKWNFTMPGLILKSISILSGAALPMALFSLGLFLALQPRKLKLGVADAIL 526 (608)
T ss_pred HHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999999732542689999-9999998611466047899999875327899999999999997535687624148999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 989999999999999999967--8868999999999742389999876565541144
Q gi|254780924|r 84 GALIQIILGTALGALMGMVMG--WSLGGSVVFGLALSIASTVVLLKALQENRILETD 138 (609)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~lg--~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~ 138 (609)
T Consensus 527 a~~~rf~~~Pa~~~~~~~~~GGsl~g~~-~~vai~~aA~P~~~v~~Vla~~y~~d~~ 582 (608)
T TIGR00946 527 ALIVRFLVGPAVMAVISKLIGGSLRGLE-LSVAIVQAALPQGIVAAVLAKEYEVDVE 582 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999999999999726544227-8999999983556889887654056788