HHsearch alignment for GI: 254780924 and conserved domain: TIGR03082
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PMID:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PMID 8002588), although we did not manage to trace t
Probab=96.06 E-value=0.095 Score=28.87 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC---H
Q ss_conf 99999999999998708886--799999999627410385584789999999999999988254168899984151---5
Q gi|254780924|r 6 WGFVLAFIFGAIANRCRLPT--LIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLISVRG---I 80 (609)
Q Consensus 6 ~~l~~a~i~g~la~rl~lP~--i~~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~---~ 80 (609)
T Consensus 2 i~~~i~~~gg~l~~~l~lP~~~llGpm~~~~~~~~~~~~~~~~P~~---~~~~~q~iiG~~iG~~f~~~~~~~~~~~~~~ 78 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPW---LLALAQVVIGILIGSRFTREVLAELKRLWPA 78 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999999998867799999999999999806765789999---9999999999999826489999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 889989999999999999999967886899999
Q gi|254780924|r 81 ALPGALIQIILGTALGALMGMVMGWSLGGSVVF 113 (609)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~all~ 113 (609)
T Consensus 79 ~l~~~~~~i~~~~~~~~~l~~~~~~~~~ta~la 111 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPLTAFLA 111 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 999999999999999999999989999899999