>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

Probab=95.66 E-value=0.066 Score=29.98 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=65.3 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH-- Q ss_conf 7817997377489999999984799-089971998999999976-992999789998999848931467999935996-- Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTA-- 523 (609) Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-- 523 (609) T Consensus 19 ~k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~~~~~~~~---~-~~~~~~dliIN~tp~G~~ 94 (155) T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDL---E-ELLAEADLIINTTPVGMK 94 (155) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCH---H-HHHCCCCEEEECCCCCCC T ss_conf 999999867589999999999719982288608999999999985013664010453---4-431568879876778777 Q ss_pred -HHHHHHHHHHHHHCCCCEEEEEEC---CHHHHHHHHHCCCCEEECH Q ss_conf -899999999999589880899946---9899999997699878765 Q gi|254780924|r 524 -FEAAYITQEARNSNPSILIIALAD---SDSEVEHLTRYGADTVVMS 566 (609) Q Consensus 524 -~~n~~~~~~~~~~~~~~~iia~~~---~~~~~~~l~~~Ga~~vi~p 566 (609) T Consensus 95 ~~~~~p~--~~~~~~~~~~~~D~iY~P~~T~ll~~a~~~g~~-~i~G 138 (155) T cd01065 95 PGDELPL--PPSLLKPGGVVYDVVYNPLETPLLKEARALGAK-TIDG 138 (155) T ss_pred CCCCCCC--CHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCE-EECC T ss_conf 8776767--887759986898653178788999999998395-8773

HHsearch alignment for GI: 254780924 and conserved domain: cd01065