HHsearch alignment for GI: 254780924 and conserved domain: cd01493
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=94.19 E-value=0.33 Score=25.10 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCH--------------------------HHHHHHHHC-CCCEEECCC
Q ss_conf 7817997377489999999984799-089971998--------------------------999999976-992999789
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSE--------------------------KKIEELRSL-GIDVIYGNA 499 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~--------------------------~~~~~~~~~-g~~~~~gd~ 499 (609)
T Consensus 20 ~s~VLiiG~~glG~EiaKNLvLaGV~svti~D~~~v~~~DLg~nFfl~~~diGk~Raea~~~~L~eLNp~V~v~~~~~~~ 99 (425)
T cd01493 20 SAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEESP 99 (425)
T ss_pred HCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 69399999971199999872132897699995991878885766156677858839999999999847868547870687
Q ss_pred CCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 998999848931467999935996899999999999589880899946
Q gi|254780924|r 500 TITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALAD 547 (609)
Q Consensus 500 ~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~ 547 (609)
T Consensus 100 ~~~~~~~~~~~~~f~vVV~t~~~~~~~~~in~~cr~~~i~-fI~~~~~ 146 (425)
T cd01493 100 EALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIP-LLYVRSY 146 (425)
T ss_pred HHHHHCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC-EEEEEEE
T ss_conf 8864268767528338998288999999999999986997-8999824