HHsearch alignment for GI: 254780924 and conserved domain: cd01493

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=94.19  E-value=0.33  Score=25.10  Aligned_cols=99  Identities=14%  Similarity=0.126  Sum_probs=0.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCH--------------------------HHHHHHHHC-CCCEEECCC
Q ss_conf             7817997377489999999984799-089971998--------------------------999999976-992999789
Q gi|254780924|r  448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSE--------------------------KKIEELRSL-GIDVIYGNA  499 (609)
Q Consensus       448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~--------------------------~~~~~~~~~-g~~~~~gd~  499 (609)
T Consensus        20 ~s~VLiiG~~glG~EiaKNLvLaGV~svti~D~~~v~~~DLg~nFfl~~~diGk~Raea~~~~L~eLNp~V~v~~~~~~~   99 (425)
T cd01493          20 SAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEESP   99 (425)
T ss_pred             HCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf             69399999971199999872132897699995991878885766156677858839999999999847868547870687


Q ss_pred             CCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             998999848931467999935996899999999999589880899946
Q gi|254780924|r  500 TITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALAD  547 (609)
Q Consensus       500 ~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~  547 (609)
T Consensus       100 ~~~~~~~~~~~~~f~vVV~t~~~~~~~~~in~~cr~~~i~-fI~~~~~  146 (425)
T cd01493         100 EALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIP-LLYVRSY  146 (425)
T ss_pred             HHHHHCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC-EEEEEEE
T ss_conf             8864268767528338998288999999999999986997-8999824