HHsearch alignment for GI: 254780924 and conserved domain: cd05291
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.20 E-value=0.02 Score=33.61 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=59.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHC--------CCCEEECCCCCHHHHHHCCHHHCCEEEEE
Q ss_conf 17997377489999999984799--089971998999999976--------99299978999899984893146799993
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSL--------GIDVIYGNATITKILLMANIEKARSLVVS 519 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~--------g~~~~~gd~~~~~~l~~~~i~~a~~vi~~ 519 (609)
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~G~a~DL~~~~~~~~~~~~i~~~-~~~-----~~~~aDvvVit 75 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAG-DYS-----DCKDADIVVIT 75 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEC-CHH-----HHCCCCEEEEC
T ss_conf 599999698899999999857998779998189870176999887013305997399608-878-----84789999990
Q ss_pred CCC---------H--HHHHH----HHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 599---------6--89999----999999958988089994698999
Q gi|254780924|r 520 IST---------A--FEAAY----ITQEARNSNPSILIIALADSDSEV 552 (609)
Q Consensus 520 ~~~---------~--~~n~~----~~~~~~~~~~~~~iia~~~~~~~~ 552 (609)
T Consensus 76 AG~~rk~g~~R~dLl~~N~~I~k~i~~~i~~~~p~aiv-ivvtNPvDv 122 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIF-LVASNPVDV 122 (306)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCCHHH
T ss_conf 67667999987899997899999999998722997189-993581678