Query gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 609
No_of_seqs 277 out of 5093
Neff 9.0
Searched_HMMs 39220
Date Mon May 30 02:17:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780924.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10669 putative cation:proto 100.0 0 0 716.5 59.4 548 1-586 8-555 (558)
2 PRK03659 glutathione-regulated 100.0 0 0 714.3 58.3 547 2-602 8-554 (602)
3 PRK03562 glutathione-regulated 100.0 0 0 709.9 59.0 547 2-602 7-553 (615)
4 COG0475 KefB Kef-type K+ trans 100.0 0 0 365.3 37.7 374 2-402 9-387 (397)
5 COG4651 RosB Kef-type K+ trans 100.0 0 0 369.1 25.8 390 1-405 8-397 (408)
6 pfam00999 Na_H_Exchanger Sodiu 100.0 0 0 344.1 38.3 364 6-393 3-371 (371)
7 TIGR00932 2a37 transporter, mo 100.0 0 0 347.0 20.1 279 8-302 1-314 (314)
8 PRK05326 potassium/proton anti 100.0 5E-36 1.3E-40 265.2 28.8 375 5-411 12-394 (563)
9 KOG1650 consensus 100.0 6.2E-31 1.6E-35 230.1 25.6 378 3-403 27-429 (769)
10 PRK10537 voltage-gated potassi 100.0 2.1E-27 5.4E-32 205.7 30.5 134 446-581 202-335 (356)
11 COG0025 NhaP NhaP-type Na+/H+ 100.0 1.4E-24 3.5E-29 186.4 39.8 335 3-360 10-364 (429)
12 COG3263 NhaP-type Na+/H+ and K 100.0 1.2E-25 3.1E-30 193.6 28.1 373 7-412 15-394 (574)
13 PRK09496 trkA potassium transp 99.9 6.5E-27 1.7E-31 202.4 14.4 161 447-609 231-396 (455)
14 PRK09496 trkA potassium transp 99.9 1.9E-25 4.9E-30 192.2 14.1 160 450-609 2-171 (455)
15 COG0569 TrkA K+ transport syst 99.9 1.5E-24 3.8E-29 186.1 14.6 160 450-609 2-166 (225)
16 pfam02254 TrkA_N TrkA-N domain 99.9 3.3E-24 8.3E-29 183.7 15.3 115 451-566 1-115 (115)
17 TIGR00831 a_cpa1 Na+/H+ antipo 99.7 6.8E-16 1.7E-20 126.4 19.1 265 16-305 15-292 (541)
18 TIGR00844 c_cpa1 sodium/hydrog 99.7 2.9E-15 7.4E-20 122.0 18.8 334 10-363 26-382 (923)
19 COG1226 Kch Kef-type K+ transp 99.7 3.3E-15 8.3E-20 121.7 18.6 141 443-583 16-157 (212)
20 KOG1965 consensus 99.7 3.5E-14 8.9E-19 114.6 22.1 317 3-342 39-384 (575)
21 KOG4505 consensus 99.6 7.7E-13 2E-17 105.3 21.2 328 16-364 31-382 (467)
22 TIGR00840 b_cpa1 sodium/hydrog 99.3 1.8E-09 4.5E-14 82.1 18.7 357 11-387 21-431 (627)
23 PRK09561 nhaA pH-dependent sod 98.6 3.4E-05 8.7E-10 52.6 19.6 262 50-365 60-351 (388)
24 KOG1966 consensus 98.5 2.1E-07 5.3E-12 67.9 6.4 312 4-336 44-378 (670)
25 PRK12460 2-keto-3-deoxyglucona 98.5 3.5E-05 9E-10 52.5 15.9 279 28-397 14-302 (308)
26 pfam05368 NmrA NmrA-like famil 98.4 1.8E-05 4.7E-10 54.5 12.6 91 451-543 1-99 (232)
27 pfam03812 KdgT 2-keto-3-deoxyg 98.3 6.3E-05 1.6E-09 50.8 14.9 249 58-397 51-311 (314)
28 pfam03601 Cons_hypoth698 Conse 98.3 0.00029 7.5E-09 46.2 22.4 113 5-121 4-125 (305)
29 CHL00194 ycf39 Ycf39; Provisio 98.3 2E-05 5E-10 54.3 12.0 118 451-570 3-148 (319)
30 pfam06965 Na_H_antiport_1 Na+/ 98.3 0.00013 3.3E-09 48.6 15.9 268 49-366 50-347 (374)
31 PRK09560 nhaA pH-dependent sod 98.3 0.00012 2.9E-09 49.0 15.5 295 50-394 52-375 (382)
32 PRK03659 glutathione-regulated 98.3 0.00039 9.9E-09 45.3 17.4 15 464-478 436-450 (602)
33 COG2855 Predicted membrane pro 98.3 0.00042 1.1E-08 45.1 21.9 117 10-130 22-147 (334)
34 COG1748 LYS9 Saccharopine dehy 98.2 8.7E-05 2.2E-09 49.8 12.9 114 449-566 2-123 (389)
35 PRK03562 glutathione-regulated 98.2 0.0005 1.3E-08 44.6 16.6 34 496-534 497-530 (615)
36 pfam03435 Saccharop_dh Sacchar 98.2 7.9E-05 2E-09 50.1 12.1 109 451-563 1-119 (384)
37 PRK03818 hypothetical protein; 98.2 8.9E-05 2.3E-09 49.7 12.3 134 11-145 18-159 (552)
38 PRK08306 dipicolinate synthase 98.1 0.00014 3.6E-09 48.4 12.2 129 448-585 152-289 (296)
39 PRK05562 precorrin-2 dehydroge 98.0 0.0001 2.7E-09 49.3 10.9 95 448-552 24-121 (222)
40 pfam05684 DUF819 Protein of un 98.0 0.0012 3E-08 42.0 34.1 313 22-393 24-370 (379)
41 pfam03446 NAD_binding_2 NAD bi 98.0 5.7E-05 1.4E-09 51.1 9.0 106 450-564 3-118 (163)
42 PRK09599 6-phosphogluconate de 98.0 0.00049 1.2E-08 44.6 13.0 112 450-566 2-119 (301)
43 pfam03616 Glt_symporter Sodium 97.9 0.0017 4.4E-08 40.9 21.0 277 17-344 28-340 (368)
44 PRK12490 6-phosphogluconate de 97.9 0.00079 2E-08 43.2 13.7 108 451-563 3-116 (298)
45 PRK05274 2-keto-3-deoxyglucona 97.9 0.00031 7.9E-09 46.0 11.6 243 58-391 54-304 (305)
46 PRK07417 arogenate dehydrogena 97.9 0.00021 5.3E-09 47.2 10.5 86 450-544 3-89 (280)
47 PRK11559 garR tartronate semia 97.9 0.00055 1.4E-08 44.3 12.5 110 450-567 3-121 (295)
48 PRK10669 putative cation:proto 97.9 0.002 5E-08 40.5 17.4 39 473-512 419-460 (558)
49 PRK08229 2-dehydropantoate 2-r 97.9 0.00024 6.1E-09 46.8 10.5 105 450-555 4-116 (341)
50 PRK06522 2-dehydropantoate 2-r 97.9 0.00037 9.3E-09 45.5 11.4 112 450-561 2-118 (307)
51 PRK06718 precorrin-2 dehydroge 97.8 0.00051 1.3E-08 44.5 10.7 96 448-553 10-107 (202)
52 PRK06719 precorrin-2 dehydroge 97.8 0.00028 7.1E-09 46.3 9.2 94 448-553 13-107 (157)
53 PRK04972 hypothetical protein; 97.7 0.00087 2.2E-08 42.9 11.3 122 4-131 17-144 (558)
54 TIGR03466 HpnA hopanoid-associ 97.7 0.00046 1.2E-08 44.8 9.6 66 451-517 3-69 (328)
55 pfam02558 ApbA Ketopantoate re 97.7 0.00069 1.8E-08 43.6 10.3 113 451-564 1-119 (150)
56 PRK07502 cyclohexadienyl dehyd 97.7 0.0005 1.3E-08 44.6 9.5 86 448-539 6-93 (307)
57 pfam00670 AdoHcyase_NAD S-aden 97.7 0.00012 3.1E-09 48.8 6.3 99 449-559 24-125 (162)
58 COG0475 KefB Kef-type K+ trans 97.7 0.0041 1.1E-07 38.3 17.9 134 248-383 22-159 (397)
59 COG1648 CysG Siroheme synthase 97.7 0.00073 1.9E-08 43.4 10.2 83 449-537 13-97 (210)
60 TIGR02964 xanthine_xdhC xanthi 97.6 0.00039 9.9E-09 45.3 8.3 115 446-562 113-238 (270)
61 pfam03721 UDPG_MGDP_dh_N UDP-g 97.6 0.0017 4.3E-08 40.9 11.4 129 450-580 2-165 (185)
62 COG3004 NhaA Na+/H+ antiporter 97.6 0.0043 1.1E-07 38.1 13.2 224 58-335 71-314 (390)
63 pfam10727 Rossmann-like Rossma 97.6 0.00047 1.2E-08 44.8 8.2 99 453-560 2-104 (111)
64 PRK05708 2-dehydropantoate 2-r 97.6 0.0015 3.9E-08 41.2 10.7 108 449-556 3-114 (305)
65 COG1893 ApbA Ketopantoate redu 97.6 0.0022 5.7E-08 40.1 11.3 112 450-562 2-117 (307)
66 PRK02006 murD UDP-N-acetylmura 97.6 0.00078 2E-08 43.2 8.9 12 567-578 479-490 (501)
67 COG2084 MmsB 3-hydroxyisobutyr 97.6 0.0041 1E-07 38.3 12.5 108 450-566 2-120 (286)
68 PRK08507 prephenate dehydrogen 97.5 0.00091 2.3E-08 42.8 9.0 82 450-540 2-85 (275)
69 cd01075 NAD_bind_Leu_Phe_Val_D 97.5 0.0045 1.2E-07 38.0 12.5 100 448-560 28-133 (200)
70 PRK10637 cysG siroheme synthas 97.5 0.0029 7.5E-08 39.3 11.5 118 445-583 212-345 (457)
71 TIGR02853 spore_dpaA dipicolin 97.5 0.0012 3E-08 42.0 9.5 188 369-580 83-284 (288)
72 PRK03369 murD UDP-N-acetylmura 97.5 0.00084 2.1E-08 43.0 8.6 36 451-486 353-391 (487)
73 COG0499 SAM1 S-adenosylhomocys 97.5 0.00036 9.2E-09 45.6 6.4 66 449-523 210-275 (420)
74 PRK00141 murD UDP-N-acetylmura 97.5 0.00047 1.2E-08 44.7 7.0 11 532-542 400-410 (476)
75 pfam01210 NAD_Gly3P_dh_N NAD-d 97.5 0.0018 4.7E-08 40.7 9.7 95 450-546 2-104 (159)
76 pfam03956 DUF340 Membrane prot 97.5 0.0048 1.2E-07 37.8 11.8 88 28-118 3-95 (191)
77 TIGR00745 apbA_panE 2-dehydrop 97.4 0.005 1.3E-07 37.7 11.6 111 450-560 1-125 (332)
78 PRK06249 2-dehydropantoate 2-r 97.4 0.0043 1.1E-07 38.1 11.2 115 447-564 4-125 (313)
79 TIGR03026 NDP-sugDHase nucleot 97.4 0.0046 1.2E-07 37.9 11.3 74 458-543 333-406 (411)
80 PTZ00142 6-phosphogluconate de 97.4 0.0097 2.5E-07 35.7 13.1 10 302-311 217-226 (474)
81 COG1023 Gnd Predicted 6-phosph 97.4 0.0026 6.5E-08 39.7 9.8 108 451-563 3-116 (300)
82 PRK09288 purT phosphoribosylgl 97.4 0.0003 7.7E-09 46.1 4.9 110 448-561 12-128 (395)
83 PTZ00075 S-adenosyl-L-homocyst 97.4 0.00048 1.2E-08 44.7 6.0 87 448-546 254-340 (476)
84 cd00401 AdoHcyase S-adenosyl-L 97.4 0.00073 1.9E-08 43.4 6.6 87 448-546 202-288 (413)
85 PRK12921 2-dehydropantoate 2-r 97.3 0.0021 5.5E-08 40.2 8.9 104 450-555 2-111 (306)
86 COG0287 TyrA Prephenate dehydr 97.3 0.0023 5.9E-08 40.0 8.9 82 448-534 3-86 (279)
87 PRK00094 gpsA NAD(P)H-dependen 97.3 0.0029 7.5E-08 39.3 9.3 95 450-546 3-105 (325)
88 TIGR03366 HpnZ_proposed putati 97.3 0.006 1.5E-07 37.1 10.8 90 448-537 121-212 (280)
89 TIGR00872 gnd_rel 6-phosphoglu 97.3 0.0031 7.9E-08 39.1 9.1 107 451-562 4-117 (341)
90 PRK12815 carB carbamoyl phosph 97.3 0.0015 3.9E-08 41.2 7.5 170 409-581 517-706 (1068)
91 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.0033 8.5E-08 38.9 9.2 93 448-546 178-272 (311)
92 TIGR01369 CPSaseII_lrg carbamo 97.3 0.0017 4.3E-08 40.9 7.7 180 400-581 525-726 (1089)
93 PRK05476 S-adenosyl-L-homocyst 97.2 0.0005 1.3E-08 44.6 4.8 67 448-523 208-274 (427)
94 pfam01488 Shikimate_DH Shikima 97.2 0.0022 5.5E-08 40.2 7.9 74 448-525 12-88 (134)
95 PRK09880 L-idonate 5-dehydroge 97.2 0.005 1.3E-07 37.7 9.8 87 448-535 170-258 (343)
96 pfam05221 AdoHcyase S-adenosyl 97.2 0.00077 2E-08 43.3 5.3 67 448-523 210-276 (430)
97 COG0786 GltS Na+/glutamate sym 97.2 0.016 4.2E-07 34.1 17.1 273 17-346 30-343 (404)
98 PRK00045 hemA glutamyl-tRNA re 97.2 0.015 3.8E-07 34.4 11.8 73 448-526 182-256 (429)
99 pfam01262 AlaDh_PNT_C Alanine 97.2 0.0047 1.2E-07 37.9 9.1 93 447-540 19-115 (150)
100 COG0240 GpsA Glycerol-3-phosph 97.1 0.0069 1.8E-07 36.7 9.6 81 450-530 3-89 (329)
101 PRK11064 wecC UDP-N-acetyl-D-m 97.1 0.01 2.5E-07 35.6 10.2 58 459-525 341-399 (415)
102 PRK06019 phosphoribosylaminoim 97.1 0.0016 4E-08 41.2 6.0 108 449-561 8-119 (377)
103 pfam01408 GFO_IDH_MocA Oxidore 97.1 0.021 5.3E-07 33.4 12.0 99 450-557 2-107 (120)
104 PRK11728 hypothetical protein; 97.1 0.0029 7.5E-08 39.3 7.2 23 446-468 191-213 (400)
105 TIGR00936 ahcY adenosylhomocys 97.1 0.0012 3.2E-08 41.8 5.3 86 449-546 212-297 (422)
106 pfam03807 F420_oxidored NADP o 97.1 0.0098 2.5E-07 35.7 9.9 86 451-544 2-89 (93)
107 PRK05294 carB carbamoyl phosph 97.0 0.0033 8.3E-08 39.0 7.3 163 413-581 521-705 (1063)
108 PRK08125 bifunctional UDP-gluc 97.0 0.0066 1.7E-07 36.9 8.9 98 447-546 314-431 (660)
109 TIGR01035 hemA glutamyl-tRNA r 97.0 0.0037 9.3E-08 38.6 7.5 75 448-523 185-262 (436)
110 PRK08017 short chain dehydroge 97.0 0.0042 1.1E-07 38.2 7.8 61 448-508 2-63 (256)
111 PRK05808 3-hydroxybutyryl-CoA 97.0 0.0093 2.4E-07 35.8 9.5 101 449-549 4-120 (282)
112 PRK12439 NAD(P)H-dependent gly 97.0 0.0074 1.9E-07 36.5 9.0 98 447-546 5-110 (340)
113 PRK06483 short chain dehydroge 97.0 0.0042 1.1E-07 38.2 7.8 72 448-519 2-81 (236)
114 PRK08773 2-octaprenyl-3-methyl 97.0 0.00066 1.7E-08 43.8 3.6 14 452-465 160-173 (392)
115 COG1064 AdhP Zn-dependent alco 97.0 0.012 3.1E-07 35.0 10.0 85 448-535 167-251 (339)
116 PRK06035 3-hydroxyacyl-CoA deh 97.0 0.009 2.3E-07 35.9 9.3 106 449-554 4-128 (291)
117 TIGR03451 mycoS_dep_FDH mycoth 97.0 0.0095 2.4E-07 35.8 9.3 88 448-536 177-269 (358)
118 PRK10675 UDP-galactose-4-epime 97.0 0.015 3.7E-07 34.5 10.1 58 451-508 3-68 (338)
119 PRK04207 glyceraldehyde-3-phos 97.0 0.0029 7.5E-08 39.3 6.4 78 450-527 4-96 (338)
120 PRK08293 3-hydroxybutyryl-CoA 97.0 0.012 3E-07 35.1 9.5 101 449-549 4-122 (288)
121 PRK05993 short chain dehydroge 96.9 0.0055 1.4E-07 37.4 7.8 61 448-508 4-65 (277)
122 PRK10309 galactitol-1-phosphat 96.9 0.017 4.3E-07 34.0 10.3 94 449-545 162-259 (347)
123 PRK12815 carB carbamoyl phosph 96.9 0.012 3E-07 35.1 9.4 60 448-517 630-689 (1068)
124 PRK05650 short chain dehydroge 96.9 0.028 7.1E-07 32.5 12.4 71 449-519 1-84 (270)
125 PRK06545 prephenate dehydrogen 96.9 0.0061 1.6E-07 37.1 7.8 41 451-491 3-45 (357)
126 TIGR01625 YidE_YbjL_dupl YidE/ 96.9 0.023 5.9E-07 33.1 10.6 116 21-138 20-145 (165)
127 PRK06130 3-hydroxybutyryl-CoA 96.9 0.0095 2.4E-07 35.8 8.6 100 449-549 6-116 (310)
128 PRK06834 hypothetical protein; 96.9 0.0014 3.5E-08 41.5 4.3 19 332-350 282-300 (488)
129 cd05293 LDH_1 A subgroup of L- 96.9 0.003 7.6E-08 39.2 5.9 98 448-552 3-125 (312)
130 PRK10083 putative dehydrogenas 96.9 0.029 7.3E-07 32.5 10.9 87 448-535 161-251 (339)
131 PRK08132 hypothetical protein; 96.9 0.0022 5.6E-08 40.2 5.2 22 47-68 69-90 (549)
132 PRK05294 carB carbamoyl phosph 96.9 0.017 4.3E-07 34.1 9.7 61 448-518 629-689 (1063)
133 PRK08244 hypothetical protein; 96.9 0.0018 4.6E-08 40.8 4.7 18 333-350 290-307 (494)
134 PRK08340 glucose-1-dehydrogena 96.8 0.0053 1.3E-07 37.5 7.0 69 450-518 2-82 (259)
135 PRK07530 3-hydroxybutyryl-CoA 96.8 0.0049 1.2E-07 37.8 6.8 100 449-548 5-120 (292)
136 PRK09260 3-hydroxybutyryl-CoA 96.8 0.01 2.7E-07 35.5 8.4 101 449-549 3-120 (289)
137 PRK04308 murD UDP-N-acetylmura 96.8 0.0069 1.8E-07 36.7 7.5 37 451-487 346-385 (445)
138 PRK10693 response regulator of 96.8 0.034 8.7E-07 31.9 12.2 97 470-567 6-109 (337)
139 PRK05872 short chain dehydroge 96.8 0.008 2E-07 36.3 7.7 75 445-519 5-90 (296)
140 PRK09126 hypothetical protein; 96.8 0.0014 3.7E-08 41.4 3.9 16 452-467 158-173 (392)
141 PRK05396 tdh L-threonine 3-deh 96.8 0.022 5.5E-07 33.3 9.9 88 449-537 165-257 (341)
142 PRK06184 hypothetical protein; 96.8 0.0021 5.4E-08 40.3 4.7 19 332-350 302-320 (503)
143 PRK08849 2-octaprenyl-3-methyl 96.8 0.0011 2.8E-08 42.2 3.3 16 452-467 158-173 (384)
144 PRK08268 3-hydroxybutyryl-CoA 96.8 0.018 4.6E-07 33.8 9.5 28 448-475 302-329 (503)
145 pfam02737 3HCDH_N 3-hydroxyacy 96.8 0.014 3.6E-07 34.6 8.9 106 450-555 1-122 (180)
146 TIGR03649 ergot_EASG ergot alk 96.8 0.022 5.6E-07 33.3 9.9 115 451-569 2-138 (285)
147 TIGR02632 RhaD_aldol-ADH rhamn 96.8 0.035 9E-07 31.8 11.5 141 439-581 414-565 (709)
148 PRK07364 2-octaprenyl-6-methox 96.8 0.0015 3.8E-08 41.3 3.8 15 452-466 171-185 (413)
149 PRK08277 D-mannonate oxidoredu 96.8 0.036 9.2E-07 31.8 11.3 75 446-520 7-95 (278)
150 PRK06182 short chain dehydroge 96.8 0.0084 2.2E-07 36.1 7.7 70 451-520 6-82 (273)
151 PRK05714 2-octaprenyl-3-methyl 96.8 0.0012 3.1E-08 41.9 3.2 12 452-463 159-170 (405)
152 PRK07024 short chain dehydroge 96.7 0.0093 2.4E-07 35.8 7.6 70 449-518 3-83 (256)
153 PRK07819 3-hydroxybutyryl-CoA 96.7 0.022 5.5E-07 33.3 9.5 100 449-548 3-119 (284)
154 PTZ00082 L-lactate dehydrogena 96.7 0.024 6.1E-07 33.0 9.7 113 448-567 7-154 (322)
155 PRK06129 3-hydroxyacyl-CoA deh 96.7 0.019 4.8E-07 33.7 9.1 101 449-549 3-120 (308)
156 COG0373 HemA Glutamyl-tRNA red 96.7 0.012 3E-07 35.2 8.0 73 448-526 178-252 (414)
157 PRK04148 hypothetical protein; 96.7 0.011 2.7E-07 35.4 7.9 97 449-550 18-114 (135)
158 PRK06949 short chain dehydroge 96.7 0.04 1E-06 31.5 10.8 71 450-520 11-94 (258)
159 PRK05884 short chain dehydroge 96.7 0.0084 2.2E-07 36.1 7.3 68 450-517 2-74 (223)
160 PRK09117 consensus 96.7 0.019 4.9E-07 33.7 9.1 100 449-548 3-118 (282)
161 PRK07660 consensus 96.7 0.022 5.7E-07 33.2 9.3 101 449-549 4-120 (283)
162 PRK06183 mhpA 3-(3-hydroxyphen 96.7 0.0035 8.8E-08 38.8 5.1 19 332-350 305-323 (554)
163 PRK06126 hypothetical protein; 96.7 0.0033 8.3E-08 39.0 5.0 19 332-350 320-338 (545)
164 PRK12491 pyrroline-5-carboxyla 96.7 0.044 1.1E-06 31.1 12.7 91 448-546 2-97 (272)
165 TIGR03201 dearomat_had 6-hydro 96.7 0.034 8.7E-07 31.9 9.9 86 449-535 168-264 (349)
166 PRK07041 short chain dehydroge 96.6 0.019 4.8E-07 33.7 8.6 71 450-520 9-87 (240)
167 PRK05653 fabG 3-ketoacyl-(acyl 96.6 0.012 2.9E-07 35.2 7.5 70 451-520 8-90 (246)
168 PRK06185 hypothetical protein; 96.6 0.0035 9E-08 38.7 4.8 11 453-463 161-171 (409)
169 PRK08217 fabG 3-ketoacyl-(acyl 96.6 0.013 3.4E-07 34.7 7.7 70 451-520 8-90 (253)
170 PRK05693 short chain dehydroge 96.6 0.012 3.1E-07 35.1 7.4 70 451-520 4-80 (274)
171 KOG1370 consensus 96.6 0.011 2.9E-07 35.2 7.3 86 448-545 214-299 (434)
172 PRK06057 short chain dehydroge 96.6 0.016 4.1E-07 34.2 8.0 71 448-518 6-85 (255)
173 PRK07231 fabG 3-ketoacyl-(acyl 96.6 0.014 3.6E-07 34.6 7.7 69 451-519 9-88 (250)
174 PRK05717 oxidoreductase; Valid 96.6 0.017 4.3E-07 34.0 8.1 74 446-519 7-91 (255)
175 pfam00899 ThiF ThiF family. Th 96.6 0.05 1.3E-06 30.8 11.5 34 449-482 2-36 (134)
176 PRK08324 short chain dehydroge 96.6 0.018 4.5E-07 33.9 8.1 77 444-520 416-505 (676)
177 cd01078 NAD_bind_H4MPT_DH NADP 96.6 0.05 1.3E-06 30.8 10.7 97 449-549 29-131 (194)
178 PRK07831 short chain dehydroge 96.6 0.051 1.3E-06 30.8 10.5 74 447-520 14-104 (261)
179 PRK07190 hypothetical protein; 96.6 0.004 1E-07 38.4 4.7 19 332-350 292-310 (480)
180 PRK08850 2-octaprenyl-6-methox 96.6 0.0021 5.5E-08 40.2 3.3 16 452-467 159-174 (405)
181 PRK08294 phenol 2-monooxygenas 96.6 0.0014 3.7E-08 41.4 2.4 20 47-66 79-98 (634)
182 TIGR00946 2a69 Auxin Efflux Ca 96.6 0.051 1.3E-06 30.7 15.6 137 255-395 458-606 (608)
183 COG0771 MurD UDP-N-acetylmuram 96.5 0.0061 1.6E-07 37.1 5.6 27 552-578 384-410 (448)
184 pfam00056 Ldh_1_N lactate/mala 96.5 0.011 2.9E-07 35.3 6.9 96 450-552 2-123 (142)
185 PRK13940 glutamyl-tRNA reducta 96.5 0.021 5.3E-07 33.5 8.2 75 448-528 181-258 (414)
186 PRK12829 short chain dehydroge 96.5 0.017 4.5E-07 33.9 7.7 72 447-518 9-92 (264)
187 TIGR00932 2a37 transporter, mo 96.5 0.055 1.4E-06 30.5 11.6 98 285-384 63-173 (314)
188 TIGR01692 HIBADH 3-hydroxyisob 96.5 0.022 5.6E-07 33.3 8.2 67 454-528 2-68 (290)
189 COG2085 Predicted dinucleotide 96.5 0.033 8.5E-07 32.0 9.1 122 450-581 3-125 (211)
190 PRK08655 prephenate dehydrogen 96.5 0.028 7.2E-07 32.5 8.8 16 493-508 366-381 (441)
191 PRK08265 short chain dehydroge 96.5 0.02 5E-07 33.6 7.9 73 446-518 3-86 (261)
192 COG1179 Dinucleotide-utilizing 96.5 0.027 6.9E-07 32.6 8.6 95 448-544 30-151 (263)
193 COG0654 UbiH 2-polyprenyl-6-me 96.5 0.0049 1.3E-07 37.7 4.8 58 449-510 3-60 (387)
194 PRK05866 short chain dehydroge 96.5 0.025 6.3E-07 32.9 8.3 80 441-520 32-125 (290)
195 COG1063 Tdh Threonine dehydrog 96.5 0.052 1.3E-06 30.7 10.0 88 450-537 171-263 (350)
196 cd00755 YgdL_like Family of ac 96.5 0.025 6.4E-07 32.9 8.3 95 448-544 11-132 (231)
197 TIGR00773 NhaA Na+/H+ antiport 96.5 0.059 1.5E-06 30.3 15.2 253 55-365 59-385 (415)
198 PRK05867 short chain dehydroge 96.5 0.02 5E-07 33.6 7.7 74 446-519 6-93 (253)
199 PRK07825 short chain dehydroge 96.4 0.026 6.6E-07 32.8 8.1 69 451-519 8-85 (273)
200 PRK08945 short chain dehydroge 96.4 0.062 1.6E-06 30.1 13.7 58 447-504 11-79 (245)
201 PRK06953 short chain dehydroge 96.4 0.018 4.6E-07 33.8 7.3 68 451-518 4-76 (222)
202 PRK07832 short chain dehydroge 96.4 0.063 1.6E-06 30.1 11.3 70 450-519 2-85 (272)
203 KOG1298 consensus 96.4 0.0096 2.5E-07 35.7 5.8 43 441-483 38-80 (509)
204 pfam02826 2-Hacid_dh_C D-isome 96.4 0.032 8.1E-07 32.2 8.5 88 448-546 36-125 (176)
205 PRK08213 gluconate 5-dehydroge 96.4 0.02 5E-07 33.6 7.4 76 445-520 8-97 (259)
206 PRK06841 short chain dehydroge 96.4 0.023 5.9E-07 33.1 7.7 75 445-519 11-96 (255)
207 PRK11083 DNA-binding response 96.4 0.059 1.5E-06 30.3 9.8 95 471-567 3-106 (229)
208 PRK08020 ubiF 2-octaprenyl-3-m 96.4 0.0038 9.6E-08 38.5 3.6 13 452-464 160-172 (391)
209 TIGR03325 BphB_TodD cis-2,3-di 96.4 0.026 6.7E-07 32.7 7.9 70 451-520 8-87 (262)
210 PRK07494 2-octaprenyl-6-methox 96.4 0.0079 2E-07 36.3 5.2 11 453-463 157-167 (386)
211 PRK09468 ompR osmolarity respo 96.4 0.034 8.7E-07 31.9 8.4 99 469-568 3-108 (239)
212 cd00757 ThiF_MoeB_HesA_family 96.3 0.069 1.8E-06 29.8 10.0 97 445-544 18-142 (228)
213 COG0702 Predicted nucleoside-d 96.3 0.041 1E-06 31.4 8.7 68 452-521 5-72 (275)
214 pfam01758 SBF Sodium Bile acid 96.3 0.07 1.8E-06 29.8 13.2 67 56-124 2-72 (188)
215 TIGR02356 adenyl_thiF thiazole 96.3 0.048 1.2E-06 30.9 9.0 52 439-490 12-64 (210)
216 PRK13771 putative alcohol dehy 96.3 0.072 1.8E-06 29.7 10.8 91 448-545 163-254 (332)
217 PRK11749 putative oxidoreducta 96.3 0.021 5.3E-07 33.4 7.1 49 447-495 275-332 (460)
218 PRK06223 malate dehydrogenase; 96.3 0.072 1.8E-06 29.7 10.1 96 450-552 2-123 (312)
219 PRK11730 fadB multifunctional 96.3 0.072 1.8E-06 29.7 9.8 101 448-548 313-429 (715)
220 PRK06124 gluconate 5-dehydroge 96.3 0.026 6.5E-07 32.8 7.4 76 446-521 11-100 (259)
221 PRK07067 sorbitol dehydrogenas 96.3 0.029 7.3E-07 32.5 7.6 69 451-519 8-86 (256)
222 PRK00066 ldh L-lactate dehydro 96.2 0.019 4.8E-07 33.7 6.6 97 447-552 5-127 (315)
223 PRK07066 3-hydroxybutyryl-CoA 96.2 0.053 1.3E-06 30.6 8.9 107 449-555 8-127 (321)
224 PRK05855 short chain dehydroge 96.2 0.078 2E-06 29.5 11.7 71 438-508 304-382 (582)
225 PRK09422 alcohol dehydrogenase 96.2 0.078 2E-06 29.5 10.7 93 449-544 164-259 (338)
226 PRK06200 2,3-dihydroxy-2,3-dih 96.2 0.025 6.3E-07 32.9 7.2 70 451-520 9-88 (263)
227 COG1004 Ugd Predicted UDP-gluc 96.2 0.078 2E-06 29.5 13.9 59 460-527 332-391 (414)
228 PRK07774 short chain dehydroge 96.2 0.028 7.2E-07 32.5 7.4 69 451-519 9-90 (250)
229 pfam01494 FAD_binding_3 FAD bi 96.2 0.0074 1.9E-07 36.5 4.5 16 452-467 153-168 (349)
230 PRK07608 hypothetical protein; 96.2 0.0045 1.2E-07 38.0 3.3 16 452-467 159-174 (389)
231 PRK07523 gluconate 5-dehydroge 96.2 0.036 9.1E-07 31.8 7.9 75 446-520 6-91 (251)
232 cd05291 HicDH_like L-2-hydroxy 96.2 0.02 5E-07 33.6 6.5 96 450-552 2-122 (306)
233 PRK08251 short chain dehydroge 96.2 0.027 6.8E-07 32.7 7.2 72 448-519 2-88 (248)
234 PRK08774 consensus 96.2 0.0041 1E-07 38.3 3.0 15 452-466 161-175 (402)
235 PRK07576 short chain dehydroge 96.2 0.03 7.7E-07 32.3 7.5 69 451-519 11-92 (260)
236 COG0686 Ald Alanine dehydrogen 96.2 0.062 1.6E-06 30.1 9.1 105 440-546 160-268 (371)
237 COG2910 Putative NADH-flavin r 96.2 0.031 7.8E-07 32.3 7.5 68 451-521 4-71 (211)
238 pfam03601 Cons_hypoth698 Conse 96.2 0.082 2.1E-06 29.3 13.2 95 255-349 24-121 (305)
239 PRK08267 short chain dehydroge 96.2 0.083 2.1E-06 29.3 11.3 69 451-519 4-84 (258)
240 PRK06463 fabG 3-ketoacyl-(acyl 96.2 0.041 1.1E-06 31.4 8.1 70 451-520 10-87 (254)
241 PRK12936 3-ketoacyl-(acyl-carr 96.2 0.049 1.2E-06 30.9 8.4 70 451-520 9-88 (245)
242 PRK07035 short chain dehydroge 96.2 0.03 7.6E-07 32.3 7.3 68 451-518 11-91 (252)
243 PRK05786 fabG 3-ketoacyl-(acyl 96.2 0.033 8.5E-07 32.0 7.6 72 450-521 7-90 (238)
244 COG2855 Predicted membrane pro 96.2 0.084 2.2E-06 29.2 12.8 99 252-350 33-132 (334)
245 PRK07680 late competence prote 96.2 0.085 2.2E-06 29.2 11.2 66 450-523 2-73 (273)
246 PRK08013 hypothetical protein; 96.2 0.0035 8.8E-08 38.8 2.5 16 452-467 159-174 (400)
247 TIGR02354 thiF_fam2 thiamine b 96.2 0.017 4.3E-07 34.1 6.0 98 448-546 21-144 (200)
248 PRK06500 short chain dehydroge 96.2 0.035 8.9E-07 31.9 7.6 70 451-520 9-88 (249)
249 PRK12939 short chain dehydroge 96.2 0.038 9.6E-07 31.6 7.8 70 451-520 10-92 (250)
250 cd01076 NAD_bind_1_Glu_DH NAD( 96.1 0.066 1.7E-06 30.0 9.0 104 448-560 31-153 (227)
251 PRK08085 gluconate 5-dehydroge 96.1 0.087 2.2E-06 29.1 12.2 70 451-520 12-94 (254)
252 PRK12828 short chain dehydroge 96.1 0.041 1.1E-06 31.4 7.9 73 448-520 6-90 (239)
253 PRK06720 hypothetical protein; 96.1 0.088 2.2E-06 29.1 10.4 61 447-507 14-82 (169)
254 PRK06227 consensus 96.1 0.051 1.3E-06 30.7 8.3 72 448-519 4-89 (256)
255 PRK06138 short chain dehydroge 96.1 0.035 8.8E-07 31.9 7.4 69 451-519 8-88 (252)
256 PRK06194 hypothetical protein; 96.1 0.037 9.4E-07 31.7 7.5 57 451-507 9-72 (301)
257 PRK08177 short chain dehydroge 96.1 0.034 8.7E-07 31.9 7.3 71 449-519 2-78 (225)
258 PRK07060 short chain dehydroge 96.1 0.046 1.2E-06 31.0 8.0 74 446-519 6-84 (245)
259 PRK07478 short chain dehydroge 96.1 0.041 1.1E-06 31.4 7.7 68 451-518 9-89 (254)
260 PRK00258 aroE shikimate 5-dehy 96.1 0.084 2.2E-06 29.2 9.2 125 448-577 122-251 (275)
261 cd00300 LDH_like L-lactate deh 96.1 0.017 4.4E-07 34.0 5.7 95 451-552 1-120 (300)
262 pfam03616 Glt_symporter Sodium 96.1 0.095 2.4E-06 28.9 12.0 29 50-78 3-33 (368)
263 PTZ00325 malate dehydrogenase; 96.1 0.095 2.4E-06 28.9 12.4 123 450-578 3-157 (313)
264 TIGR03082 Gneg_AbrB_dup membra 96.1 0.095 2.4E-06 28.9 12.4 105 6-113 2-111 (156)
265 PRK06113 7-alpha-hydroxysteroi 96.0 0.05 1.3E-06 30.8 8.0 77 444-520 6-96 (255)
266 PRK06079 enoyl-(acyl carrier p 96.0 0.048 1.2E-06 30.9 7.9 68 451-518 10-89 (252)
267 TIGR00946 2a69 Auxin Efflux Ca 96.0 0.096 2.4E-06 28.8 12.5 125 12-138 448-582 (608)
268 PRK08644 thiamine biosynthesis 96.0 0.071 1.8E-06 29.7 8.7 96 441-537 20-141 (209)
269 KOG0024 consensus 96.0 0.096 2.5E-06 28.8 10.0 92 446-537 168-267 (354)
270 COG2431 Predicted membrane pro 96.0 0.092 2.3E-06 29.0 9.3 27 321-347 173-199 (297)
271 pfam06826 Asp-Al_Ex Predicted 96.0 0.098 2.5E-06 28.8 14.2 120 5-126 3-131 (169)
272 PRK06346 consensus 96.0 0.033 8.4E-07 32.0 6.9 69 451-519 8-89 (251)
273 TIGR01179 galE UDP-glucose 4-e 96.0 0.011 2.9E-07 35.3 4.5 127 453-580 5-164 (341)
274 PRK00377 cbiT cobalt-precorrin 96.0 0.1 2.5E-06 28.7 11.5 108 450-561 43-164 (198)
275 PRK06172 short chain dehydroge 96.0 0.049 1.2E-06 30.9 7.7 71 448-518 6-90 (253)
276 PRK06101 short chain dehydroge 96.0 0.034 8.8E-07 31.9 6.9 58 451-508 4-64 (241)
277 PRK12384 sorbitol-6-phosphate 96.0 0.1 2.7E-06 28.6 12.6 71 450-520 4-89 (259)
278 PRK05868 hypothetical protein; 96.0 0.012 3E-07 35.1 4.5 12 453-464 152-163 (372)
279 PRK10643 DNA-binding transcrip 96.0 0.1 2.6E-06 28.7 9.2 95 473-568 2-103 (222)
280 COG0169 AroE Shikimate 5-dehyd 95.9 0.027 6.8E-07 32.7 6.2 127 448-579 126-261 (283)
281 PRK08862 short chain dehydroge 95.9 0.051 1.3E-06 30.7 7.6 73 447-519 3-90 (227)
282 PRK07097 gluconate 5-dehydroge 95.9 0.11 2.7E-06 28.5 13.0 75 447-521 8-96 (265)
283 PRK09072 short chain dehydroge 95.9 0.11 2.7E-06 28.5 12.6 71 450-520 7-87 (262)
284 PTZ00117 malate dehydrogenase; 95.9 0.026 6.6E-07 32.8 6.1 97 449-552 2-123 (313)
285 TIGR03025 EPS_sugtrans exopoly 95.9 0.11 2.7E-06 28.5 14.3 92 448-544 125-222 (445)
286 PRK06940 short chain dehydroge 95.9 0.038 9.6E-07 31.7 6.9 71 448-519 4-86 (277)
287 PRK08339 short chain dehydroge 95.9 0.054 1.4E-06 30.6 7.7 70 451-520 11-93 (263)
288 cd01337 MDH_glyoxysomal_mitoch 95.9 0.11 2.8E-06 28.5 14.4 119 450-574 2-153 (310)
289 PRK06198 short chain dehydroge 95.9 0.11 2.8E-06 28.4 12.2 71 450-520 8-92 (268)
290 PRK09242 tropinone reductase; 95.9 0.11 2.8E-06 28.4 13.5 74 447-520 8-97 (258)
291 pfam00208 ELFV_dehydrog Glutam 95.9 0.11 2.8E-06 28.4 13.0 103 449-560 33-157 (237)
292 PRK10365 transcriptional regul 95.9 0.11 2.9E-06 28.4 10.9 33 447-479 161-198 (441)
293 PRK07109 short chain dehydroge 95.9 0.11 2.9E-06 28.4 12.6 69 451-519 11-92 (338)
294 PRK06484 short chain dehydroge 95.9 0.078 2E-06 29.5 8.4 61 447-507 272-337 (530)
295 PRK06617 2-octaprenyl-6-methox 95.9 0.0074 1.9E-07 36.5 3.1 16 452-467 151-166 (374)
296 PRK08219 short chain dehydroge 95.9 0.071 1.8E-06 29.7 8.1 70 451-521 6-79 (226)
297 PRK07479 consensus 95.8 0.043 1.1E-06 31.2 6.9 69 451-519 8-89 (252)
298 PRK07063 short chain dehydroge 95.8 0.12 3E-06 28.2 12.3 69 451-519 10-92 (259)
299 PRK08223 hypothetical protein; 95.8 0.067 1.7E-06 29.9 7.8 99 443-565 22-123 (287)
300 PRK06114 short chain dehydroge 95.8 0.092 2.4E-06 29.0 8.5 77 443-519 10-101 (262)
301 PRK07333 2-octaprenyl-6-methox 95.8 0.013 3.3E-07 34.8 4.1 15 452-466 158-172 (403)
302 PRK03612 spermidine synthase; 95.8 0.12 3.1E-06 28.2 20.6 112 445-560 291-433 (516)
303 cd05211 NAD_bind_Glu_Leu_Phe_V 95.8 0.12 3.1E-06 28.2 11.6 103 449-560 24-144 (217)
304 PRK07045 putative monooxygenas 95.8 0.017 4.3E-07 34.1 4.7 16 452-467 156-171 (388)
305 PRK07588 hypothetical protein; 95.8 0.016 4.2E-07 34.1 4.6 21 560-580 345-365 (391)
306 PRK09836 DNA-binding transcrip 95.8 0.089 2.3E-06 29.1 8.3 95 473-568 2-103 (226)
307 PRK08762 molybdopterin biosynt 95.8 0.12 3.1E-06 28.1 11.5 99 437-537 127-253 (379)
308 TIGR02032 GG-red-SF geranylger 95.8 0.023 6E-07 33.1 5.4 58 450-514 2-60 (343)
309 PRK07775 short chain dehydroge 95.8 0.12 3.1E-06 28.1 12.5 73 448-520 10-95 (275)
310 PRK07814 short chain dehydroge 95.8 0.12 3.2E-06 28.1 12.0 75 446-520 7-95 (263)
311 PRK07201 short chain dehydroge 95.8 0.033 8.4E-07 32.0 6.1 71 449-519 377-460 (663)
312 COG0451 WcaG Nucleoside-diphos 95.8 0.031 7.9E-07 32.2 5.9 68 451-519 3-71 (314)
313 PRK12429 3-hydroxybutyrate deh 95.8 0.06 1.5E-06 30.2 7.4 70 451-520 7-89 (258)
314 cd05292 LDH_2 A subgroup of L- 95.7 0.038 9.7E-07 31.6 6.3 108 450-566 2-140 (308)
315 COG1255 Uncharacterized protei 95.7 0.081 2.1E-06 29.4 7.9 94 448-549 14-107 (129)
316 PRK12771 putative glutamate sy 95.7 0.088 2.2E-06 29.1 8.1 82 446-528 265-380 (560)
317 PRK09853 putative selenate red 95.7 0.071 1.8E-06 29.7 7.6 74 445-521 547-643 (1032)
318 PRK10610 chemotaxis regulatory 95.7 0.13 3.3E-06 27.9 9.8 112 468-580 2-122 (129)
319 PRK05690 molybdopterin biosynt 95.7 0.083 2.1E-06 29.3 7.9 94 442-537 26-147 (245)
320 cd01485 E1-1_like Ubiquitin ac 95.7 0.12 3E-06 28.2 8.7 99 447-546 18-146 (198)
321 cd01483 E1_enzyme_family Super 95.7 0.1 2.6E-06 28.7 8.3 34 450-483 1-35 (143)
322 pfam01370 Epimerase NAD depend 95.7 0.048 1.2E-06 30.9 6.7 93 451-544 1-113 (235)
323 PRK06436 glycerate dehydrogena 95.7 0.096 2.4E-06 28.8 8.2 96 449-557 123-225 (303)
324 PRK10538 3-hydroxy acid dehydr 95.7 0.052 1.3E-06 30.7 6.8 70 451-520 3-82 (248)
325 PRK09291 short chain dehydroge 95.7 0.13 3.4E-06 27.9 8.8 72 449-520 3-81 (257)
326 COG2985 Predicted permease [Ge 95.7 0.14 3.5E-06 27.8 11.5 136 8-147 13-159 (544)
327 cd01065 NAD_bind_Shikimate_DH 95.7 0.066 1.7E-06 30.0 7.3 112 448-566 19-138 (155)
328 PRK08643 acetoin reductase; Va 95.7 0.053 1.4E-06 30.6 6.8 69 451-519 5-86 (256)
329 PRK07806 short chain dehydroge 95.6 0.11 2.9E-06 28.3 8.4 68 451-518 9-90 (248)
330 PRK07454 short chain dehydroge 95.6 0.14 3.6E-06 27.7 12.0 71 450-520 8-91 (241)
331 PRK09186 flagellin modificatio 95.6 0.14 3.7E-06 27.6 12.3 69 451-519 7-89 (255)
332 COG0579 Predicted dehydrogenas 95.6 0.14 3.7E-06 27.6 9.0 39 451-489 6-46 (429)
333 PRK12826 3-ketoacyl-(acyl-carr 95.6 0.15 3.8E-06 27.5 13.4 70 451-520 9-91 (253)
334 PRK12810 gltD glutamate syntha 95.6 0.072 1.8E-06 29.7 7.2 49 448-496 281-348 (472)
335 PRK10157 putative oxidoreducta 95.6 0.03 7.6E-07 32.3 5.2 21 446-467 150-170 (428)
336 COG0026 PurK Phosphoribosylami 95.5 0.065 1.7E-06 30.0 6.9 106 451-561 4-113 (375)
337 PRK12409 D-amino acid dehydrog 95.5 0.019 4.9E-07 33.7 4.2 29 447-476 246-281 (410)
338 PRK08415 enoyl-(acyl carrier p 95.5 0.1 2.6E-06 28.7 7.8 69 450-518 7-89 (274)
339 PRK05134 3-demethylubiquinone- 95.5 0.15 3.9E-06 27.5 8.9 102 450-556 51-161 (233)
340 cd01339 LDH-like_MDH L-lactate 95.5 0.048 1.2E-06 30.9 6.2 95 451-552 1-120 (300)
341 COG1086 Predicted nucleoside-d 95.5 0.15 3.9E-06 27.5 14.4 120 449-582 251-400 (588)
342 PRK06125 short chain dehydroge 95.5 0.13 3.3E-06 28.0 8.3 70 451-520 10-89 (259)
343 PRK11101 glpA sn-glycerol-3-ph 95.5 0.15 3.8E-06 27.5 8.6 17 540-556 427-443 (545)
344 PRK06181 short chain dehydroge 95.5 0.068 1.7E-06 29.9 6.8 68 451-518 4-84 (263)
345 PRK04690 murD UDP-N-acetylmura 95.5 0.073 1.9E-06 29.7 7.0 13 511-523 371-383 (468)
346 cd00650 LDH_MDH_like NAD-depen 95.5 0.055 1.4E-06 30.5 6.3 95 451-552 1-124 (263)
347 COG1087 GalE UDP-glucose 4-epi 95.5 0.031 7.9E-07 32.2 5.0 118 451-569 3-144 (329)
348 TIGR01161 purK phosphoribosyla 95.5 0.059 1.5E-06 30.3 6.4 128 451-581 2-141 (386)
349 PRK13243 glyoxylate reductase; 95.4 0.12 3E-06 28.3 7.9 88 449-546 151-240 (333)
350 KOG0409 consensus 95.4 0.16 4.2E-06 27.2 9.1 47 448-494 35-81 (327)
351 PRK13984 putative oxidoreducta 95.4 0.12 3E-06 28.2 7.8 33 449-481 284-316 (604)
352 PRK11154 fadJ multifunctional 95.4 0.17 4.4E-06 27.1 9.6 98 448-545 309-423 (706)
353 COG0300 DltE Short-chain dehyd 95.4 0.14 3.4E-06 27.8 8.0 72 448-519 6-91 (265)
354 pfam00070 Pyr_redox Pyridine n 95.4 0.04 1E-06 31.4 5.3 48 450-497 1-60 (82)
355 PRK12742 oxidoreductase; Provi 95.4 0.13 3.4E-06 27.9 8.0 71 450-520 8-83 (237)
356 PRK07688 thiamine/molybdopteri 95.4 0.052 1.3E-06 30.7 5.9 93 443-537 19-141 (339)
357 pfam01073 3Beta_HSD 3-beta hyd 95.4 0.065 1.7E-06 30.0 6.4 84 455-539 5-109 (280)
358 COG0644 FixC Dehydrogenases (f 95.4 0.038 9.6E-07 31.6 5.1 57 449-512 4-60 (396)
359 PRK07236 hypothetical protein; 95.4 0.023 5.9E-07 33.1 4.1 24 572-595 350-373 (386)
360 PRK09754 phenylpropionate diox 95.3 0.031 8E-07 32.2 4.7 75 448-522 144-239 (400)
361 PRK12935 acetoacetyl-CoA reduc 95.3 0.11 2.7E-06 28.5 7.4 70 451-520 9-92 (247)
362 PRK12825 fabG 3-ketoacyl-(acyl 95.3 0.085 2.2E-06 29.2 6.9 70 451-520 10-93 (250)
363 cd01492 Aos1_SUMO Ubiquitin ac 95.3 0.18 4.5E-06 27.0 11.9 90 445-537 18-135 (197)
364 PRK10015 hypothetical protein; 95.3 0.041 1E-06 31.4 5.2 18 449-467 153-170 (429)
365 PRK13856 two-component respons 95.3 0.18 4.5E-06 27.0 9.7 99 472-572 2-108 (241)
366 TIGR03315 Se_ygfK putative sel 95.3 0.13 3.4E-06 27.9 7.9 73 446-521 535-630 (1012)
367 KOG1201 consensus 95.3 0.18 4.6E-06 27.0 8.5 56 451-506 41-102 (300)
368 PRK06753 hypothetical protein; 95.3 0.022 5.6E-07 33.3 3.8 13 453-465 144-156 (373)
369 PRK10124 putative UDP-glucose 95.3 0.18 4.6E-06 27.0 15.9 89 448-543 144-237 (464)
370 COG1052 LdhA Lactate dehydroge 95.3 0.15 3.9E-06 27.4 8.1 88 449-546 147-236 (324)
371 PRK06139 short chain dehydroge 95.3 0.18 4.6E-06 27.0 12.2 58 450-507 8-72 (324)
372 PRK12809 putative oxidoreducta 95.3 0.11 2.8E-06 28.4 7.4 69 449-521 311-404 (639)
373 PRK07102 short chain dehydroge 95.3 0.1 2.6E-06 28.7 7.1 71 450-520 3-84 (243)
374 TIGR02817 adh_fam_1 zinc-bindi 95.3 0.061 1.6E-06 30.2 6.0 105 445-553 148-255 (338)
375 COG0677 WecC UDP-N-acetyl-D-ma 95.3 0.1 2.6E-06 28.7 7.1 58 460-525 344-401 (436)
376 TIGR03206 benzo_BadH 2-hydroxy 95.3 0.19 4.7E-06 26.9 12.2 70 451-520 6-88 (250)
377 PRK00536 speE spermidine synth 95.2 0.17 4.2E-06 27.2 8.2 98 448-550 73-175 (262)
378 PRK07890 short chain dehydroge 95.2 0.096 2.5E-06 28.8 6.9 69 451-519 8-89 (258)
379 PRK05876 short chain dehydroge 95.2 0.11 2.9E-06 28.3 7.3 58 451-508 9-73 (275)
380 PRK07984 enoyl-(acyl carrier p 95.2 0.13 3.4E-06 27.9 7.6 70 450-519 8-91 (262)
381 PRK07889 enoyl-(acyl carrier p 95.2 0.13 3.4E-06 27.8 7.6 69 450-518 9-90 (256)
382 PRK07326 short chain dehydroge 95.2 0.19 4.9E-06 26.7 11.0 70 450-519 7-87 (235)
383 PRK08159 enoyl-(acyl carrier p 95.2 0.14 3.6E-06 27.7 7.6 70 450-519 12-95 (272)
384 COG0039 Mdh Malate/lactate deh 95.2 0.087 2.2E-06 29.1 6.5 103 450-553 2-124 (313)
385 PRK13512 coenzyme A disulfide 95.2 0.033 8.4E-07 32.0 4.4 76 448-523 148-240 (438)
386 PRK13394 3-hydroxybutyrate deh 95.2 0.2 5.1E-06 26.7 10.3 70 451-520 10-92 (262)
387 PRK10336 DNA-binding transcrip 95.2 0.12 3.2E-06 28.1 7.3 93 473-566 2-102 (219)
388 PRK10161 transcriptional regul 95.1 0.2 5.1E-06 26.6 9.3 98 471-569 2-108 (229)
389 PRK07679 pyrroline-5-carboxyla 95.1 0.2 5.2E-06 26.6 12.1 90 449-546 4-99 (279)
390 PRK07208 hypothetical protein; 95.1 0.03 7.7E-07 32.3 4.0 11 569-579 442-452 (474)
391 PRK08642 fabG 3-ketoacyl-(acyl 95.1 0.12 3.1E-06 28.2 7.1 58 451-508 9-71 (254)
392 PRK11173 two-component respons 95.1 0.2 5.2E-06 26.6 8.6 95 471-567 3-105 (237)
393 PRK06171 sorbitol-6-phosphate 95.1 0.093 2.4E-06 28.9 6.5 70 448-520 8-85 (266)
394 PRK08328 hypothetical protein; 95.1 0.21 5.3E-06 26.5 8.3 91 445-537 24-143 (230)
395 pfam00072 Response_reg Respons 95.1 0.21 5.3E-06 26.5 10.0 93 474-567 1-100 (111)
396 PRK05732 2-octaprenyl-6-methox 95.1 0.022 5.7E-07 33.2 3.3 15 452-466 160-174 (395)
397 PRK01581 speE spermidine synth 95.1 0.21 5.3E-06 26.5 9.1 111 447-561 139-280 (363)
398 PRK12746 short chain dehydroge 95.1 0.17 4.4E-06 27.1 7.8 69 452-520 10-98 (254)
399 PRK11199 tyrA bifunctional cho 95.1 0.17 4.4E-06 27.1 7.8 123 445-568 96-243 (374)
400 COG0057 GapA Glyceraldehyde-3- 95.0 0.17 4.3E-06 27.1 7.7 127 450-579 3-162 (335)
401 PRK10840 transcriptional regul 95.0 0.21 5.5E-06 26.4 12.3 110 471-582 3-124 (216)
402 PRK10710 DNA-binding transcrip 95.0 0.14 3.5E-06 27.7 7.2 99 468-568 7-112 (240)
403 PRK09310 aroDE bifunctional 3- 95.0 0.13 3.2E-06 28.0 7.0 113 448-576 332-448 (477)
404 pfam02310 B12-binding B12 bind 95.0 0.13 3.4E-06 27.8 7.1 91 461-569 18-114 (121)
405 PRK10403 transcriptional regul 95.0 0.22 5.6E-06 26.3 9.0 109 471-580 6-122 (215)
406 PRK06484 short chain dehydroge 95.0 0.13 3.3E-06 27.9 7.0 18 483-500 290-307 (530)
407 PRK07533 enoyl-(acyl carrier p 95.0 0.21 5.2E-06 26.6 8.0 69 450-518 8-90 (254)
408 PRK07634 pyrroline-5-carboxyla 95.0 0.22 5.7E-06 26.3 11.6 90 448-546 4-99 (245)
409 PRK08628 short chain dehydroge 94.9 0.13 3.3E-06 28.0 6.9 73 447-519 5-90 (258)
410 PRK08594 enoyl-(acyl carrier p 94.9 0.14 3.6E-06 27.7 7.0 59 450-508 8-76 (256)
411 TIGR01988 Ubi-OHases Ubiquinon 94.9 0.023 5.8E-07 33.2 3.0 63 450-512 1-72 (445)
412 PRK07792 fabG 3-ketoacyl-(acyl 94.9 0.21 5.3E-06 26.5 7.9 76 444-519 4-93 (303)
413 COG2242 CobL Precorrin-6B meth 94.9 0.23 5.9E-06 26.2 11.3 108 449-564 36-157 (187)
414 TIGR01087 murD UDP-N-acetylmur 94.9 0.016 4.1E-07 34.2 2.2 67 450-521 1-75 (476)
415 PRK01747 mnmC 5-methylaminomet 94.9 0.054 1.4E-06 30.6 4.8 44 446-489 254-297 (660)
416 PRK08125 bifunctional UDP-gluc 94.9 0.18 4.5E-06 27.0 7.5 70 455-534 507-579 (660)
417 KOG0370 consensus 94.9 0.059 1.5E-06 30.3 5.0 171 408-581 881-1070(1435)
418 PRK12814 putative NADPH-depend 94.9 0.17 4.2E-06 27.2 7.3 51 446-496 321-380 (652)
419 PRK08309 short chain dehydroge 94.9 0.14 3.5E-06 27.8 6.9 94 450-543 2-108 (182)
420 KOG0069 consensus 94.9 0.14 3.7E-06 27.6 7.0 87 448-543 162-250 (336)
421 pfam02719 Polysacc_synt_2 Poly 94.9 0.11 2.9E-06 28.3 6.4 92 454-546 5-123 (280)
422 PRK04965 nitric oxide reductas 94.9 0.088 2.3E-06 29.1 5.8 129 448-580 141-301 (378)
423 PRK06505 enoyl-(acyl carrier p 94.9 0.23 6E-06 26.2 8.0 69 450-518 9-91 (271)
424 PRK10923 glnG nitrogen regulat 94.8 0.24 6.1E-06 26.1 11.0 32 448-479 161-197 (469)
425 PRK00711 D-amino acid dehydrog 94.8 0.046 1.2E-06 31.0 4.4 23 445-468 243-265 (416)
426 COG0458 CarB Carbamoylphosphat 94.8 0.059 1.5E-06 30.3 4.9 127 452-579 10-150 (400)
427 TIGR03385 CoA_CoA_reduc CoA-di 94.8 0.088 2.2E-06 29.1 5.8 75 448-522 137-231 (427)
428 PRK08410 2-hydroxyacid dehydro 94.8 0.24 6.1E-06 26.1 8.0 85 449-546 146-232 (311)
429 pfam07021 MetW Methionine bios 94.8 0.085 2.2E-06 29.2 5.7 96 449-553 15-116 (193)
430 pfam07991 IlvN Acetohydroxy ac 94.8 0.24 6.2E-06 26.1 10.7 90 449-547 5-95 (165)
431 PRK13581 D-3-phosphoglycerate 94.8 0.24 6.2E-06 26.0 9.2 85 450-546 140-228 (524)
432 pfam04321 RmlD_sub_bind RmlD s 94.8 0.12 3E-06 28.2 6.4 14 530-543 223-236 (284)
433 TIGR01082 murC UDP-N-acetylmur 94.8 0.14 3.5E-06 27.8 6.7 90 453-546 4-97 (491)
434 pfam00289 CPSase_L_chain Carba 94.8 0.072 1.8E-06 29.7 5.3 99 449-567 2-105 (109)
435 PRK07666 fabG 3-ketoacyl-(acyl 94.8 0.25 6.3E-06 26.0 12.7 70 450-519 8-90 (238)
436 pfam03709 OKR_DC_1_N Orn/Lys/A 94.8 0.17 4.2E-06 27.2 7.1 100 457-581 3-107 (111)
437 PRK08263 short chain dehydroge 94.8 0.11 2.9E-06 28.3 6.2 69 451-519 6-84 (275)
438 COG3180 AbrB Putative ammonia 94.8 0.25 6.4E-06 25.9 31.5 106 3-112 10-121 (352)
439 PRK13403 ketol-acid reductoiso 94.8 0.23 5.8E-06 26.3 7.7 68 449-525 17-84 (335)
440 PRK07776 consensus 94.8 0.25 6.5E-06 25.9 13.9 72 447-518 6-89 (252)
441 KOG1430 consensus 94.7 0.15 3.9E-06 27.5 6.8 63 448-510 4-75 (361)
442 TIGR02352 thiamin_ThiO glycine 94.7 0.052 1.3E-06 30.7 4.4 104 451-556 1-130 (357)
443 PRK06988 putative formyltransf 94.7 0.19 4.8E-06 26.8 7.3 72 448-519 2-84 (313)
444 PRK11361 acetoacetate metaboli 94.7 0.26 6.5E-06 25.9 11.5 32 448-479 166-202 (457)
445 pfam00389 2-Hacid_dh D-isomer 94.7 0.26 6.5E-06 25.9 10.1 93 448-546 137-230 (313)
446 PRK08220 2,3-dihydroxybenzoate 94.7 0.094 2.4E-06 28.9 5.7 68 451-520 11-85 (253)
447 PRK12744 short chain dehydroge 94.7 0.26 6.6E-06 25.9 9.4 73 448-520 7-97 (257)
448 PRK07370 enoyl-(acyl carrier p 94.7 0.19 4.9E-06 26.8 7.3 69 450-518 9-94 (259)
449 PRK06196 oxidoreductase; Provi 94.7 0.26 6.6E-06 25.9 8.3 66 443-508 20-89 (316)
450 cd05313 NAD_bind_2_Glu_DH NAD( 94.7 0.26 6.7E-06 25.8 9.7 106 449-560 39-171 (254)
451 TIGR03023 WcaJ_sugtrans Undeca 94.7 0.26 6.7E-06 25.8 16.5 92 448-544 128-225 (451)
452 PRK05565 fabG 3-ketoacyl-(acyl 94.6 0.17 4.3E-06 27.1 6.9 71 450-520 7-91 (247)
453 PRK06914 short chain dehydroge 94.6 0.17 4.4E-06 27.1 6.9 69 451-519 6-88 (280)
454 PRK09935 transcriptional regul 94.6 0.27 6.9E-06 25.7 10.3 109 472-581 4-120 (210)
455 PRK10084 dTDP-glucose 4,6 dehy 94.6 0.27 7E-06 25.7 7.9 13 516-528 256-268 (352)
456 PRK05472 redox-sensing transcr 94.6 0.077 2E-06 29.5 5.0 88 442-534 78-168 (211)
457 cd05290 LDH_3 A subgroup of L- 94.6 0.28 7.1E-06 25.7 9.4 109 451-566 2-143 (307)
458 PRK12475 thiamine/molybdopteri 94.6 0.28 7.1E-06 25.7 10.3 94 442-537 18-141 (337)
459 PRK06550 fabG 3-ketoacyl-(acyl 94.6 0.28 7.1E-06 25.6 10.3 65 451-519 8-75 (237)
460 PRK11880 pyrroline-5-carboxyla 94.6 0.28 7.2E-06 25.6 11.9 67 449-523 3-73 (267)
461 COG0345 ProC Pyrroline-5-carbo 94.5 0.28 7.2E-06 25.6 12.5 88 450-546 3-95 (266)
462 pfam01266 DAO FAD dependent ox 94.5 0.066 1.7E-06 30.0 4.5 19 448-467 191-209 (309)
463 COG0334 GdhA Glutamate dehydro 94.5 0.29 7.3E-06 25.6 8.5 98 450-560 209-329 (411)
464 PRK08948 consensus 94.5 0.037 9.4E-07 31.7 3.2 15 452-466 157-171 (392)
465 PRK12549 shikimate 5-dehydroge 94.5 0.092 2.4E-06 29.0 5.2 125 448-576 127-259 (284)
466 pfam06408 consensus 94.5 0.25 6.3E-06 26.0 7.4 12 528-539 376-387 (471)
467 PRK12480 D-lactate dehydrogena 94.5 0.15 3.7E-06 27.6 6.2 96 450-557 148-250 (330)
468 PRK00048 dihydrodipicolinate r 94.5 0.19 4.7E-06 26.9 6.7 122 450-581 4-139 (265)
469 PRK06180 short chain dehydroge 94.4 0.16 4E-06 27.4 6.3 69 451-519 7-85 (277)
470 PRK01045 ispH 4-hydroxy-3-meth 94.4 0.3 7.6E-06 25.5 8.2 73 448-520 65-143 (304)
471 PRK12769 putative oxidoreducta 94.4 0.21 5.4E-06 26.5 6.9 31 450-480 329-359 (654)
472 KOG2304 consensus 94.4 0.081 2.1E-06 29.4 4.8 43 447-489 10-52 (298)
473 PRK10816 DNA-binding transcrip 94.4 0.21 5.3E-06 26.5 6.9 95 473-568 2-103 (223)
474 TIGR01771 L-LDH-NAD L-lactate 94.4 0.15 3.8E-06 27.5 6.1 148 453-609 1-188 (302)
475 PRK06476 pyrroline-5-carboxyla 94.4 0.31 7.8E-06 25.4 12.4 66 450-521 2-70 (255)
476 COG0111 SerA Phosphoglycerate 94.3 0.2 5.2E-06 26.6 6.7 84 450-543 144-230 (324)
477 PRK07538 hypothetical protein; 94.3 0.055 1.4E-06 30.5 3.8 12 560-571 382-393 (413)
478 PRK06197 short chain dehydroge 94.3 0.31 8E-06 25.3 10.9 66 441-506 8-83 (306)
479 PRK07985 oxidoreductase; Provi 94.3 0.28 7E-06 25.7 7.4 73 447-519 47-135 (294)
480 pfam02153 PDH Prephenate dehyd 94.3 0.31 7.8E-06 25.4 7.6 74 463-543 1-76 (258)
481 pfam03686 UPF0146 Uncharacteri 94.3 0.26 6.7E-06 25.8 7.2 87 448-542 14-100 (127)
482 cd01484 E1-2_like Ubiquitin ac 94.3 0.18 4.7E-06 26.9 6.3 88 450-537 1-116 (234)
483 PRK08605 D-lactate dehydrogena 94.3 0.32 8.1E-06 25.3 7.5 106 431-547 128-237 (332)
484 PRK07476 threonine dehydratase 94.2 0.33 8.3E-06 25.2 8.9 161 444-606 66-265 (323)
485 PRK12770 putative glutamate sy 94.2 0.087 2.2E-06 29.1 4.6 41 441-481 10-50 (350)
486 COG0385 Predicted Na+-dependen 94.2 0.33 8.5E-06 25.1 25.9 300 17-397 3-306 (319)
487 cd01493 APPBP1_RUB Ubiquitin a 94.2 0.33 8.5E-06 25.1 9.3 99 448-547 20-146 (425)
488 PRK12550 shikimate 5-dehydroge 94.2 0.2 5.1E-06 26.7 6.4 72 441-521 115-187 (272)
489 PRK09009 C factor cell-cell si 94.2 0.11 2.7E-06 28.5 5.0 72 450-521 2-76 (235)
490 PRK06935 2-deoxy-D-gluconate 3 94.1 0.34 8.7E-06 25.0 8.0 74 435-508 1-81 (258)
491 PRK06997 enoyl-(acyl carrier p 94.1 0.31 7.8E-06 25.4 7.3 60 449-508 7-74 (260)
492 PRK12481 2-deoxy-D-gluconate 3 94.1 0.34 8.7E-06 25.0 7.8 67 442-508 1-73 (251)
493 TIGR01809 Shik-DH-AROM shikima 94.1 0.098 2.5E-06 28.8 4.7 73 452-524 134-209 (291)
494 KOG1650 consensus 94.1 0.34 8.8E-06 25.0 13.2 157 2-161 258-420 (769)
495 PRK07856 short chain dehydroge 94.1 0.21 5.4E-06 26.5 6.3 60 446-508 5-66 (254)
496 PRK05086 malate dehydrogenase; 94.1 0.36 9.1E-06 24.9 12.0 136 450-588 2-168 (312)
497 PRK12827 short chain dehydroge 94.0 0.36 9.1E-06 24.9 9.6 89 445-544 2-92 (251)
498 PRK09958 DNA-binding transcrip 94.0 0.36 9.2E-06 24.9 9.1 113 472-585 1-120 (204)
499 TIGR01546 GAPDH-II_archae glyc 94.0 0.12 3.2E-06 28.1 5.1 68 455-522 5-85 (335)
500 PRK05976 dihydrolipoamide dehy 94.0 0.22 5.6E-06 26.3 6.3 55 443-497 170-236 (464)
No 1
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=0 Score=716.46 Aligned_cols=548 Identities=51% Similarity=0.838 Sum_probs=497.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH
Q ss_conf 93799999999999999987088867999999996274103855847899999999999999882541688999841515
Q gi|254780924|r 1 MTTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLISVRGI 80 (609)
Q Consensus 1 I~~l~~~l~~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~ 80 (609)
|++++..+.+|.+++.+++|+|+|+++||+++|+++||+++|++++++.++.++|+|++++||..|+|+|++++|+.++.
T Consensus 8 l~~i~~~L~~a~i~g~l~~rl~lp~vlGyLlaGillGP~~lg~v~~~~~i~~laelGVv~LLF~iGLE~sl~~L~~~~~~ 87 (558)
T PRK10669 8 ITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSI 87 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999999999999799869999999999675634566787899999999799999987866899999998989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88998999999999999999996788689999999997423899998765655411440578989987777899999999
Q gi|254780924|r 81 ALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVL 160 (609)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~i 160 (609)
.+..+..++.+++.+++..++++|++|..++++|.+++.|||++++++++|++..+++.|+.+++++++||+++++++++
T Consensus 88 ~~~~g~~qv~~~~~l~~~~~~~lG~~~~~ai~lG~~la~SSTaIv~k~L~e~~~l~t~~G~~~lgill~QDi~~v~~L~~ 167 (558)
T PRK10669 88 AIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVL 167 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999997866889999999998625999999999851123851167888899999999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99861344433013567899998876532101479999999841010000100034454387764203567368999999
Q gi|254780924|r 161 IPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVL 240 (609)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (609)
++.+............. ....+.+.+.+...+....++.+||+.||++++..+.+++|.+....+
T Consensus 168 l~~l~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~gr~ll~~l~~~~a~~~~~Elf~l~~l 232 (558)
T PRK10669 168 LPAVAGMMEQGDVGFAT---------------LAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVL 232 (558)
T ss_pred HHHHHCCCCCCCCCHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99862123578763788---------------999999999999999999999999999999999987078289999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999888741100246666642220276145689999976689999999988653114798862025677776555
Q gi|254780924|r 241 AIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIV 320 (609)
Q Consensus 241 ~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~ 320 (609)
.++++.++...++.|+|+.+|||+||+.+++++++|++++++.|++++|.++||+++||.+|+..+.++|+.++..++..
T Consensus 233 ~~~l~~a~~a~~~~GlS~~lGAFlAGl~la~s~~~~~i~~~i~p~rd~fl~lFFvsvGm~~d~~~l~~~~~~il~~~~~~ 312 (558)
T PRK10669 233 ALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAII 312 (558)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999983744888999976886068058999998872999999999999988628999998899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42212232110002558799999986432122025678898876417878668778778889999999999986789999
Q gi|254780924|r 321 IIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQS 400 (609)
Q Consensus 321 ~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~~~~~l~~ 400 (609)
+++|...++...+..|+++|+++..|+.|+|+|||+++++..|.+.|+++++.|+.++.++++||++||+++.+.++...
T Consensus 313 ~~~K~~~~~~~~~~~g~~~~~a~~~g~~Laq~GEFsfvl~~~a~~~gli~~~~~~~~~~~~~lSm~ltP~l~~~~~r~~~ 392 (558)
T PRK10669 313 LFGKSAAAFFLVRLFGHSQRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLEKYLA 392 (558)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998189877899999886035409999999999879979899999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 99987543210000001112221000012223333211122232134781799737748999999998479908997199
Q gi|254780924|r 401 FLVLRFARVTSSTEQYSHICVEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS 480 (609)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~ 480 (609)
...+...+. .....++....+.+.+||++||||||+|+.+++.|+++|++++++|.|
T Consensus 393 ~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~hvii~G~Gr~G~~va~~L~~~~~~~vvid~d 449 (558)
T PRK10669 393 KTETLEEQT-----------------------LEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLASGIPLVVIETS 449 (558)
T ss_pred HHHHCCCCC-----------------------CCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 652012223-----------------------433333333687666799899898866999999999879988999898
Q ss_pred HHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC
Q ss_conf 89999999769929997899989998489314679999359968999999999995898808999469899999997699
Q gi|254780924|r 481 EKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALADSDSEVEHLTRYGA 560 (609)
Q Consensus 481 ~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~~~Ga 560 (609)
++++++++++|++++|||++|+++|+++|+++|+.++++++|++.|..++.++|+++|+.+|++|++|+++.++|+++||
T Consensus 450 ~~~v~~~~~~g~~v~~GDa~~~~~L~~agi~~A~~vvit~~d~~~~~~iv~~~r~~~p~~~IiaRa~~~~~~~~L~~aGA 529 (558)
T PRK10669 450 RTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKNPDIEIIARAHYDDEVAYITERGA 529 (558)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC
T ss_conf 99999999689979997899889998579132499999819889999999999987869869999798999999997799
Q ss_pred CEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87876589999999999874210026
Q gi|254780924|r 561 DTVVMSAREIALGMLDRLNQVHHEKV 586 (609)
Q Consensus 561 ~~vi~p~~~~a~~~~~~l~~~~~~~~ 586 (609)
|+|+.|++++|++++|++..|...+.
T Consensus 530 ~~VV~~~~e~a~~m~e~l~~p~~~~~ 555 (558)
T PRK10669 530 NQVVMGEREIARTMLELLETPPAGEV 555 (558)
T ss_pred CEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf 98989378999999998579997556
No 2
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=0 Score=714.31 Aligned_cols=547 Identities=26% Similarity=0.395 Sum_probs=488.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHH
Q ss_conf 37999999999999999870888679999999962741038558478999999999999998825416889998415158
Q gi|254780924|r 2 TTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLISVRGIA 81 (609)
Q Consensus 2 ~~l~~~l~~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~ 81 (609)
.++.+.+..|.+++.+++|+|+|+++||+++|+++||+++|++++.+.++.++|+|++++||..|+|+|++++|+.++.+
T Consensus 8 ~~~~i~L~aa~i~v~l~~Rl~lp~VlGYLlaGiliGP~glglv~~~~~i~~laElGVv~LLF~iGLE~s~~~L~~~r~~v 87 (602)
T PRK03659 8 TAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSI 87 (602)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999999999985997799999999986635245777879999999999999999989778999999988899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89989999999999999999967886899999999974238999987656554114405789899877778999999999
Q gi|254780924|r 82 LPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLI 161 (609)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il 161 (609)
+..+..++++++.+++..++++|++|..|+++|.+++.|||+++.+.++|++..+++.|+..++++++||++++++++++
T Consensus 88 ~~~G~~qv~lt~~~~~~~~~~~g~~~~~al~iG~~lalSSTaIv~k~L~e~~~l~t~~G~~~~giLl~QDlavIplL~ll 167 (602)
T PRK03659 88 FGVGAAQVLLSAAVLAGLLMLTDFAWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALV 167 (602)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999976667789999999998769999999998420047220112479999999999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 98613444330135678999988765321014799999998410100001000344543877642035673689999999
Q gi|254780924|r 162 PAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLA 241 (609)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (609)
+.++.......... ........+....+.+||+.++++++..+.+++|+++...++
T Consensus 168 ~~la~~~~~~~~~~------------------------~~~~~~~~~~~~~~~gr~l~~~l~r~va~~~~~Elf~~~~Ll 223 (602)
T PRK03659 168 PLLAGSADEHFDWL------------------------KIGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALL 223 (602)
T ss_pred HHHCCCCCCCHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99706876534899------------------------999999999999999999999999998870770889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998887411002466666422202761456899999766899999999886531147988620256777765554
Q gi|254780924|r 242 IALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIVI 321 (609)
Q Consensus 242 ~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~~ 321 (609)
++++.++. ++..|+|+.+|||+||+.+++++|+|+++++++|++++|.++||+++||.+|++.+.++|+.++..++..+
T Consensus 224 lvlg~A~l-~~~~GLS~aLGAFlAGvlLa~s~~rhele~~I~Pfkdlll~lFFisVGm~id~~~l~~~~~~il~~~~~li 302 (602)
T PRK03659 224 LVLGSALF-MDALGLSMALGTFIAGVLLAESEYRHELEIAIDPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLV 302 (602)
T ss_pred HHHHHHHH-HHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999-99966379999988647751780089999989999999999999998886488999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22122321100025587999999864321220256788988764178786687787788899999999999867899999
Q gi|254780924|r 322 IGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQSF 401 (609)
Q Consensus 322 ~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~~~~~l~~~ 401 (609)
++|++..+..++.+|+++++++..|+.++|+|||++|+++.|.+.|+++++.++.++.++++||++||++....+++...
T Consensus 303 ~vK~~v~~~l~~~~g~~~~~a~~~gl~LaQ~GEFsFVl~~~a~~~gli~~~~~~~ll~vv~lSM~lTPll~~~~~~~~~~ 382 (602)
T PRK03659 303 AVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKWLSR 382 (602)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999994998668999999812522699999999987799798999899999999999999999987999875
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCH
Q ss_conf 99875432100000011122210000122233332111222321347817997377489999999984799089971998
Q gi|254780924|r 402 LVLRFARVTSSTEQYSHICVEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSE 481 (609)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~ 481 (609)
+... .+.........+.++|||||||||+||.++|.|+++|++++++|.|+
T Consensus 383 ---~~~~--------------------------~~~~~~~~~~~~~~~~VII~G~GR~Gq~var~L~~~gi~~vviD~d~ 433 (602)
T PRK03659 383 ---RLNG--------------------------PEEEDEKPWVEDDKPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI 433 (602)
T ss_pred ---HHCC--------------------------CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf ---4045--------------------------43355566654678998997887568999999997899989997867
Q ss_pred HHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC
Q ss_conf 99999997699299978999899984893146799993599689999999999958988089994698999999976998
Q gi|254780924|r 482 KKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALADSDSEVEHLTRYGAD 561 (609)
Q Consensus 482 ~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~~~Ga~ 561 (609)
++++.++++|++++|||++++++|+++|+++|+.+|+++||.+.+..+++.+|+++|+.+|+||++|+.|.+.|+++|+|
T Consensus 434 ~~V~~~r~~G~~v~yGDat~~~vL~~AGi~~A~~vViai~d~~~~~~iv~~~r~~~P~l~I~aRar~~~~~~~L~~~Ga~ 513 (602)
T PRK03659 434 SAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKLVELCQQHFPHLHILARARGRVEAHELLQAGVT 513 (602)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC
T ss_conf 99999997899089758999999986790405889998298999999999999878699699986978999999978999
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78765899999999998742100267878778887303896
Q gi|254780924|r 562 TVVMSAREIALGMLDRLNQVHHEKVTCDRSNKDEIDSKDDS 602 (609)
Q Consensus 562 ~vi~p~~~~a~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~ 602 (609)
+|+.++.+++.+++++.......+-...++..+.++.+|+.
T Consensus 514 ~vv~Et~essL~l~~~~L~~lG~~~~~a~~~~~~f~~~d~~ 554 (602)
T PRK03659 514 QFSRETFSSALELGRKTLVSLGMHPHQAQRAQLHFRRLDMR 554 (602)
T ss_pred EEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 78662789999999999998099999999999999999999
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=0 Score=709.85 Aligned_cols=547 Identities=24% Similarity=0.382 Sum_probs=492.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHH
Q ss_conf 37999999999999999870888679999999962741038558478999999999999998825416889998415158
Q gi|254780924|r 2 TTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLISVRGIA 81 (609)
Q Consensus 2 ~~l~~~l~~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~ 81 (609)
.+..+.+..|.+.+.+++|+|+|+++|||++|+++||+++|++++.+.++.++|+|++++||.+|+|++++++|+.++.+
T Consensus 7 ~~~~i~L~aavi~v~la~Rl~lp~VlGYLlaGiliGP~glgli~~~~~i~~~aE~GVv~LLF~iGLEls~~rL~~~r~~v 86 (615)
T PRK03562 7 IQALIYLGAAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFVIGLELDPQRLWKLRASV 86 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999999999995998499999999986745244668889999999997999999988578999999989899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89989999999999999999967886899999999974238999987656554114405789899877778999999999
Q gi|254780924|r 82 LPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLI 161 (609)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il 161 (609)
+..+..+++++..+.+.+++++|++|..|+++|.+++.|||++++++++|++..+++.|+..++++++||++++++++++
T Consensus 87 ~~~G~~Qvl~t~~~~~~~~~~lG~~~~~al~iG~~lalSSTaIvl~~L~e~~~l~t~~G~~~~giLlfQDlavIplL~ll 166 (615)
T PRK03562 87 FGGGALQMVACGGLLGLFCMLLGLRWQVAELIGLTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMI 166 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999967878889999999986229999999998500048420678889999999999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 98613444330135678999988765321014799999998410100001000344543877642035673689999999
Q gi|254780924|r 162 PAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLA 241 (609)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (609)
+.++......... ..+....+....+....+.+||+.++++++.++.+++|.++...+.
T Consensus 167 p~La~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~gr~ll~~l~~~va~~~~~Elf~~~aL~ 225 (615)
T PRK03562 167 PLLAASGASTTLG---------------------AFALSALKVAGALALVVLLGRYVTRPALRFVARSGLREVFSAVALF 225 (615)
T ss_pred HHHCCCCCCCHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9861577640267---------------------8999999999999999999999889999999863780689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998887411002466666422202761456899999766899999999886531147988620256777765554
Q gi|254780924|r 242 IALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIVI 321 (609)
Q Consensus 242 ~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~~ 321 (609)
++++.++. ++..|+|+.+|||+||+.+++++|+|+++++++||+++|.++||+++||.+|+..+.++|+.++..++..+
T Consensus 226 lvlg~A~l-~~~~GLS~aLGAFlAGvlLaes~yrh~ie~~I~Pfk~lflglFFisVGm~id~~~l~~~~~~il~l~~~l~ 304 (615)
T PRK03562 226 LVFGFGLL-LEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRILILLLGFL 304 (615)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999-99963669999998433202765589999988989999999999998875389999987999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22122321100025587999999864321220256788988764178786687787788899999999999867899999
Q gi|254780924|r 322 IGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQSF 401 (609)
Q Consensus 322 ~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~~~~~l~~~ 401 (609)
++|.+..+..++.+|+++++++..|+.|+|+|||++|+...|.+.|+++++.++.++.++++||++||++..+.+++..
T Consensus 305 ~~K~~v~~~~~~~~g~~~~~a~~~g~~LaQ~GEFaFVl~~~a~~~gli~~~~~~~l~~vv~lSM~lTPll~~~~~r~~~- 383 (615)
T PRK03562 305 AIKIAMLWLLARPLGVPRKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPLLLVLLDRLEQ- 383 (615)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 9999999999999088775799999987146515999999898678889899999999999999999999999999962-
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCH
Q ss_conf 99875432100000011122210000122233332111222321347817997377489999999984799089971998
Q gi|254780924|r 402 LVLRFARVTSSTEQYSHICVEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSE 481 (609)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~ 481 (609)
++.. ..+.....++.++|||||||||+||.++|.|+++|++++++|.|+
T Consensus 384 --~~~~-----------------------------~~~~~~~~~~~~~~VII~G~GRvGq~var~L~~~gi~~vviD~d~ 432 (615)
T PRK03562 384 --PRTG-----------------------------EAREADEIDEEQPRVIIAGFGRFGQIVGRLLLSSGVKMVVLDHDP 432 (615)
T ss_pred --CCCC-----------------------------CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCH
T ss_conf --2012-----------------------------467655556789998999028046999999997899879997999
Q ss_pred HHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC
Q ss_conf 99999997699299978999899984893146799993599689999999999958988089994698999999976998
Q gi|254780924|r 482 KKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALADSDSEVEHLTRYGAD 561 (609)
Q Consensus 482 ~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~~~Ga~ 561 (609)
++++.++++|++++|||++++++|+++|+++|+.+|+++||.+.+..+++.+|+++|+.+|+||++|+.|.+.|+++|+|
T Consensus 433 ~~V~~~r~~G~~v~yGDat~~~vL~~AGi~~Ar~vViaidd~~~~~~iv~~~r~~~P~l~IiaRard~~~~~~L~~~Ga~ 512 (615)
T PRK03562 433 DHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTELVKEHFPHLQIIARARDVDHYIRLRQAGVE 512 (615)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC
T ss_conf 99999996799089768999999986791406889999498999999999999758998699983977889999978999
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78765899999999998742100267878778887303896
Q gi|254780924|r 562 TVVMSAREIALGMLDRLNQVHHEKVTCDRSNKDEIDSKDDS 602 (609)
Q Consensus 562 ~vi~p~~~~a~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~ 602 (609)
+|+.++.+++.+++++.......+-.+.++..++++.+|+.
T Consensus 513 ~vv~Et~essL~l~~~~L~~lG~~~~~a~~~~~~fr~~d~~ 553 (615)
T PRK03562 513 KPERETFEGALKSGRLALESLGLGPYEARERADRFRRFNIQ 553 (615)
T ss_pred EEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89666589999999999998099999999999999999999
No 4
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=365.26 Aligned_cols=374 Identities=35% Similarity=0.572 Sum_probs=318.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH
Q ss_conf 379999999999999998708886799999999627410385-5847899999999999999882541688999841515
Q gi|254780924|r 2 TTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGF-VASQSLVPALAEIGIILLMFGVGLHFSVKDLISVRGI 80 (609)
Q Consensus 2 ~~l~~~l~~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~-i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~ 80 (609)
.++.+.+..+.+.+.+++|+|+|+++||+++|+++||.+++. .++++.++.++|+|++++||.+|+|.|++++|+++|+
T Consensus 9 ~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~ 88 (397)
T COG0475 9 LQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRS 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999999999980999069999789850612303778741999999999999999999880799999974246
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -889989999999999999999-967886899999999974238999987656554114405789899877778999999
Q gi|254780924|r 81 -ALPGALIQIILGTALGALMGM-VMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLAL 158 (609)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~~-~lg~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l 158 (609)
....+..++..++..+....+ .+|++|..++++|.+++.||+++++++++|.+..+++.|+..++++++||+++++++
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lL 168 (397)
T COG0475 89 VGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLL 168 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 45678899999999999999999975354899999999998389999999998251104458999999999999999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf 99998613444330135678999988765321014799999998410100001000344543877642035673689999
Q gi|254780924|r 159 VLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLG 238 (609)
Q Consensus 159 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (609)
++...+...++..... +.........+.......++|+.++.+|+..+.+.+|.+...
T Consensus 169 ai~~~l~~~~~~~~~~----------------------~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~ 226 (397)
T COG0475 169 AIVPALAGGGSGSVGF----------------------ILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILF 226 (397)
T ss_pred HHHHHHHCCCCCHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999981588730768----------------------999999999999999999999999999998005750469999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 9999999999888741100246666642220276145-689999976689-99999998865311479886202567777
Q gi|254780924|r 239 VLAIALGFAYGSSKLFGVSLSLGAFFAGMILAESELS-QSAAQESLPLRD-AFSVLFFISVGMMFNPDILISNPILLMMA 316 (609)
Q Consensus 239 ~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~~-~~~~~~~~~~~~-~~~~~fFv~iG~~l~~~~l~~~~~~~l~~ 316 (609)
.+..++..+ ..++..|.|+++|||++|+.+++.+++ |+++++++|+++ +|.|+||+.+|+++|+..+.+++...+..
T Consensus 227 ~l~i~l~~a-~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~ 305 (397)
T COG0475 227 VLLLVLGAA-YLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLL 305 (397)
T ss_pred HHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 999999999-9999868669999999999870344408999999996784999999999987883898887559999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65554221223211000255879999998643212202567889887641787866877877888999999999998678
Q gi|254780924|r 317 VIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVLAE 396 (609)
Q Consensus 317 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~~~~ 396 (609)
....+..|..+++..++..|.++|++...|..+.|++|++++.++.+.. +.........++..+++.||+......
T Consensus 306 ~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~----~~i~~~~~~~~v~~smi~t~i~~~~~~ 381 (397)
T COG0475 306 VALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG----SAISEALLTAVVILSMITTPILPLLTP 381 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999997534667999997652214899999986201----454888999999999999999998899
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780924|r 397 FLQSFL 402 (609)
Q Consensus 397 ~l~~~~ 402 (609)
++.++.
T Consensus 382 ~~~~~~ 387 (397)
T COG0475 382 ILLKRL 387 (397)
T ss_pred HHHHHH
T ss_conf 998763
No 5
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=369.09 Aligned_cols=390 Identities=60% Similarity=0.991 Sum_probs=363.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH
Q ss_conf 93799999999999999987088867999999996274103855847899999999999999882541688999841515
Q gi|254780924|r 1 MTTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLISVRGI 80 (609)
Q Consensus 1 I~~l~~~l~~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~ 80 (609)
|+++...+.+|++.|.++.|+|+|+.+||+++|++.||+.-|++.++.....++|+|++++||..|++++.|++...+..
T Consensus 8 i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~i 87 (408)
T COG4651 8 ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAI 87 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHH
T ss_conf 99999999999999999974578705999999985489998761545577999986389999751200258987667897
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88998999999999999999996788689999999997423899998765655411440578989987777899999999
Q gi|254780924|r 81 ALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVL 160 (609)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~i 160 (609)
.+..++.+.......+....+.+||++...+.+|.++|.+||.+..+.++|++..++..|+++++.++++|++.+..+..
T Consensus 88 AipgAl~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvl 167 (408)
T COG4651 88 AIPGALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVL 167 (408)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHH
T ss_conf 36618999999999986799870887556503642165678999999999851112457648886211888999999998
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99861344433013567899998876532101479999999841010000100034454387764203567368999999
Q gi|254780924|r 161 IPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVL 240 (609)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (609)
++++++........ .........++..+...|.+.+.+.+|++.||..++.+.++++|++++..+
T Consensus 168 lpa~a~~~g~~~~~---------------~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~vl 232 (408)
T COG4651 168 LPALAGVLGQGDVG---------------FATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVL 232 (408)
T ss_pred HHHHHHHHCCCCCC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 48877543366522---------------101378888889889999999999977789999999987075889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999888741100246666642220276145689999976689999999988653114798862025677776555
Q gi|254780924|r 241 AIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIV 320 (609)
Q Consensus 241 ~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~ 320 (609)
..+++.+++..++.|.|..+|||.+|+++++++.+|+..++..|+++.|...||+++||.+|+..+.+++...+..++..
T Consensus 233 a~ALgVa~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii 312 (408)
T COG4651 233 AIALGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLII 312 (408)
T ss_pred HHHHHHHHCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH
T ss_conf 99999860520143655667899988886000666888873367798999999997324228477503649999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42212232110002558799999986432122025678898876417878668778778889999999999986789999
Q gi|254780924|r 321 IIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQS 400 (609)
Q Consensus 321 ~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~~~~~l~~ 400 (609)
+.+|-...+...+.++++.|+++.++.+++|.|||+++++..+.+++++++...+.++..+++|+++.|+++...++..+
T Consensus 313 ~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~~~ 392 (408)
T COG4651 313 LFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRYQR 392 (408)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96258999999999689623799999789865228999977764036475777779999999999982899999999866
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780924|r 401 FLVLR 405 (609)
Q Consensus 401 ~~~~~ 405 (609)
....+
T Consensus 393 ~~e~~ 397 (408)
T COG4651 393 SAEWL 397 (408)
T ss_pred HHHHH
T ss_conf 64521
No 6
>pfam00999 Na_H_Exchanger Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.
Probab=100.00 E-value=0 Score=344.10 Aligned_cols=364 Identities=30% Similarity=0.443 Sum_probs=300.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHH
Q ss_conf 99999999999998708886799999999627410385584-78999999999999998825416889998415158899
Q gi|254780924|r 6 WGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVAS-QSLVPALAEIGIILLMFGVGLHFSVKDLISVRGIALPG 84 (609)
Q Consensus 6 ~~l~~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~i~~-~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~~ 84 (609)
+.++.+.+++.+++|+|+|++++|+++|+++||+++|++++ ++.++.++++|+++++|.+|+|+|++++|+++++....
T Consensus 3 iil~~a~~~~~l~~rl~lP~ivg~il~GillGp~~l~~~~~~~~~~~~l~~lgl~~llF~~Gl~l~~~~l~~~~~~~~~~ 82 (371)
T pfam00999 3 LLILLALLAGLLARRLGLPPVVGLILAGILLGPSGLGLVEPDELDLEVLAELGLPFLLFLAGLELDLRELRKNGKSILLL 82 (371)
T ss_pred EEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 63009999999999979979999999999983633167775425899999999999999999789999999855799999
Q ss_pred HHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999---967886899999999974238999987656554114405789899877778999999999
Q gi|254780924|r 85 ALIQIILGTALGALMGM---VMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLI 161 (609)
Q Consensus 85 ~~~~~~~~~~~~~~~~~---~lg~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il 161 (609)
++.+++.++..+....+ ..++++..++++|++++.|||+++.++++|.+..+++.++...+++.+||+.+++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ls~ts~~vv~~il~~~~~~~~~~~~~~l~~~~~~D~~~iil~~v~ 162 (371)
T pfam00999 83 ALLGVLLPFLLIGLLLALLGGLGIPLLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVL 162 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999847658999999999970228899887875166775999999999999869999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 98613444330135678999988765321014799999998410100001000344543877642035673689999999
Q gi|254780924|r 162 PAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLA 241 (609)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (609)
......+......... .................++...+..+.. .+++|......+.
T Consensus 163 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 219 (371)
T pfam00999 163 LALAGVGGLSDLGLLL---------------------LIFLVVALGGLLLGLVFGWLLRLITRFT--SGDRELEVLLVLA 219 (371)
T ss_pred HHHHCCCCCHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHH
T ss_conf 9997177515799999---------------------9999999999999999999999999970--4650799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998887411002466666422202761456899999766-89999999988653114798862025677776555
Q gi|254780924|r 242 IALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPL-RDAFSVLFFISVGMMFNPDILISNPILLMMAVIIV 320 (609)
Q Consensus 242 ~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~~~~~~~~~~~~-~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~ 320 (609)
.++ .++..++..|.|+.+|+|++|+.+++.+++++..++.+++ ++++.|+||+.+|+++|++.+.+.|..........
T Consensus 220 ~~~-~~~~~a~~~g~s~~lgaf~aGl~l~~~~~~~~~~~~~~~~~~~~~~p~fF~~~G~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
T pfam00999 220 LAL-LAALLAELLGLSGILGAFLAGLVLSNYAFANELSEKLEPFGYGLFLPLFFVLVGLSLDLSLLLSLLLLVLLLLVAI 298 (371)
T ss_pred HHH-HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 999-9999986336216899999999964776206799999999999999999999998726887888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4221223211000255879999998643212202567889887641787866877877888999999999998
Q gi|254780924|r 321 IIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFV 393 (609)
Q Consensus 321 ~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~ 393 (609)
+++|+.+++...+..|.++||++..|+.++|+|+++++++..+.+.|+++++.|+.++.++++|++++|++.+
T Consensus 299 ~~~k~~~~~~~~~~~~~~~~~~l~~g~~l~~rg~~~l~la~~~~~~~~i~~~~~~~~v~~~l~t~~i~P~l~k 371 (371)
T pfam00999 299 LLGKLLGVFLLARLLGLSLREALIVGFGGLQRGAVSLALAAIGLQLGLIDRELYTLLVAVVLLTTLLKPLLKK 371 (371)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999909988899999999999999999999999987999988999999999999999998629
No 7
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family; InterPro: IPR004771 Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport . The monovalent Cation:Proton antiporter-1 (CPA1) family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. This family represent the K(+)/H(+) antiporter. ; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=346.98 Aligned_cols=279 Identities=35% Similarity=0.614 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHCCHHCCCCCCHH----------HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999870888-------679999999962741038558478----------9999999999999988254168
Q gi|254780924|r 8 FVLAFIFGAIANRCRLP-------TLIGYLVAGILVGPRTPGFVASQS----------LVPALAEIGIILLMFGVGLHFS 70 (609)
Q Consensus 8 l~~a~i~g~la~rl~lP-------~i~~~il~GillGp~~l~~i~~~~----------~l~~l~~lgl~~llF~~Gleld 70 (609)
+..|.+++.+++|+|+| +++||+++|+++||+++|++++++ .+..++|+|++++||.+|||+|
T Consensus 1 L~~a~l~~~l~~rL~~p~smmRqP~VlGyL~~G~~iGP~~lg~i~~~~ntifPtssiP~~~~laE~GV~lLmF~~GLE~d 80 (314)
T TIGR00932 1 LLAAVLAVPLARRLGIPFSMMRQPSVLGYLLAGVLIGPSGLGLISNVENTIFPTSSIPLVNHLAELGVILLMFLIGLELD 80 (314)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 86888888999870798310015506889998888712425314258662137503558998988889999999887328
Q ss_pred HHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8999841515889989999999----9999999999678868---------99999999974238999987656554114
Q gi|254780924|r 71 VKDLISVRGIALPGALIQIILG----TALGALMGMVMGWSLG---------GSVVFGLALSIASTVVLLKALQENRILET 137 (609)
Q Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lg~~~~---------~all~g~~l~~ts~~vv~~~l~~~~~~~~ 137 (609)
+++||+.+|.++..+..++.+| +..+....+.+|+.|. .++++|.++|.||+++++++|+|++..++
T Consensus 81 ~~~L~~~~k~~~~~g~lq~~~~~GfG~ll~~~~~~~~g~~~~GeRHikfsv~a~~~G~~L~~~Stav~~~~L~E~~~~~~ 160 (314)
T TIGR00932 81 LERLKKLRKAAFGVGVLQVLVSGGFGVLLGLLLGHLLGLALGGERHIKFSVAAVVIGIILALSSTAVVVQVLKERNLLKT 160 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999999722077642226789999999999850357886025788999999999999999999999865053334
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 40578989987777899999999998613444330135678999988765321014799999998410100001000344
Q gi|254780924|r 138 DRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRR 217 (609)
Q Consensus 138 ~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (609)
+.||...+++++||+++++.++++..+....+..... .......+.....+...++....+.+||
T Consensus 161 ~~G~~~l~~l~~~D~a~v~lL~l~~~l~~~~g~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 225 (314)
T TIGR00932 161 REGQTVLGILLFQDIAVVPLLALLPLLATGSGKETVS---------------ASTEHVALALLLLKVFLAFLLLVLLGRW 225 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6789999999999999999999999856887664536---------------4104577999999999999999999999
Q ss_pred CCHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHH-HHHHHH
Q ss_conf 543877642035673---6899999999999999888741100246666642220276145-68999997668-999999
Q gi|254780924|r 218 VIPWILHMIFYTGSR---ELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAESELS-QSAAQESLPLR-DAFSVL 292 (609)
Q Consensus 218 ~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~~-~~~~~~~~~~~-~~~~~~ 292 (609)
+.||.+++..+.+.+ |.++...++++++.++ ..+..|+|+++|||+||+++++++++ |+++++++|++ ++|+|+
T Consensus 226 l~~~~~~~~~~~~~~~~Se~~t~~~L~~~~g~a~-~~~~~Gls~alGAF~AGv~ls~s~~~~~~l~~~~~p~~yg~l~pl 304 (314)
T TIGR00932 226 LLRPVLRLTAEARLSKDSELFTAASLLLVLGSAY-LADLLGLSMALGAFLAGVLLSESEYRKHELESDIEPIGYGLLLPL 304 (314)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEH
T ss_conf 8489999998622899845899999999999999-998874769999989878740015578899987401145001001
Q ss_pred HHHHHHHHCC
Q ss_conf 9988653114
Q gi|254780924|r 293 FFISVGMMFN 302 (609)
Q Consensus 293 fFv~iG~~l~ 302 (609)
||+.+||++|
T Consensus 305 FF~svGm~~d 314 (314)
T TIGR00932 305 FFISVGMSLD 314 (314)
T ss_pred HHEEECCCCC
T ss_conf 0023245679
No 8
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=5e-36 Score=265.16 Aligned_cols=375 Identities=17% Similarity=0.254 Sum_probs=273.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHH
Q ss_conf 99999999999999870888679999999962741038558--4789999999999999988254168899984151588
Q gi|254780924|r 5 IWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVA--SQSLVPALAEIGIILLMFGVGLHFSVKDLISVRGIAL 82 (609)
Q Consensus 5 ~~~l~~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~i~--~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~ 82 (609)
...+.++.++..+++|+++|.++.|+..|+++||.+++.++ +.+..+.++++++++|||++|++++++++|+..++..
T Consensus 12 a~ll~~~il~s~ls~R~gvP~LLlfL~vGml~G~dGlggI~fd~~~la~~igs~ALaiILF~GGl~t~~~~~r~~~~p~~ 91 (563)
T PRK05326 12 ALLLLLSILSSKLSSRFGIPILLIFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALWPAL 91 (563)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999999871971999999999971755448847797799999999999999871746798899987766668
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999999999-99967886899999999974238999987656554-11440578989987777899999999
Q gi|254780924|r 83 PGALIQIILGTALGALM-GMVMGWSLGGSVVFGLALSIASTVVLLKALQENRI-LETDRGKIAVGWLIVEDLIIVLALVL 160 (609)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~lg~~~~~all~g~~l~~ts~~vv~~~l~~~~~-~~~~~g~~~~~~~~~~Di~~i~~l~i 160 (609)
.+++.++++|..++..+ +|.+|++|..++++|++++.|+++.+.++++.++. .+.+...+...++..+|..++++...
T Consensus 92 ~LaTlGV~iT~~~~g~~a~~llgl~w~~alLlGAIv~sTDaAaVfslLR~~~~~lk~rl~~~Le~ESg~NDP~Av~Ltv~ 171 (563)
T PRK05326 92 SLATLGVLITAGLTGLFAHWLLGLSWLEGLLLGAIVGSTDAAAVFSLLRSKGLNLKERVASTLEIESGSNDPMAVFLTIT 171 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999999999999974879999988344304772676777742678853578989978772235799999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99861344433013567899998876532101479999999841010000100034454387764203567368999999
Q gi|254780924|r 161 IPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVL 240 (609)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (609)
+.............. ...+...........+...++..++.++..-. ...+.....+
T Consensus 172 li~~~~~~~~~~~~~----------------------~~~~~~q~~iG~~iG~~~G~l~~~ll~r~~l~-~~gL~pvl~l 228 (563)
T PRK05326 172 LIELITGGESLSWGF----------------------LGLFLQQFGLGALIGLLGGKLLVKLLNRIALP-AEGLYPILVL 228 (563)
T ss_pred HHHHHHCCCCCHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHH
T ss_conf 999984788647999----------------------99999999999999999999999999846686-0011689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHH
Q ss_conf 9999999988874110024666664222027614--56899999766899999999886531147988620256-77776
Q gi|254780924|r 241 AIALGFAYGSSKLFGVSLSLGAFFAGMILAESEL--SQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNPIL-LMMAV 317 (609)
Q Consensus 241 ~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~--~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~~~-~l~~~ 317 (609)
..++.. +..++..+.|+.++++++|++++|.+. ++.+.++.+.+..+.....|+.+|+.++++.+.+.++. .+...
T Consensus 229 a~~l~~-fa~a~~l~gSGfLAVyvaGivlGN~~~~~~~~i~~F~egla~L~qi~mFllLGllv~Ps~L~~~~~~al~lal 307 (563)
T PRK05326 229 SGALLI-FAATAALGGSGFLAVYLAGLVLGNRPIRHRKSILRFFDGLAWLAQIGMFLVLGLLVTPSELLPIALPALLLAL 307 (563)
T ss_pred HHHHHH-HHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 999999-9999986635399999999998277786579999999999999999999999987399999998999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55542212232110002558799999986432122025678898876417878668-77877888999999999998678
Q gi|254780924|r 318 IIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQA-RDLILASSIISIILNPLVFVLAE 396 (609)
Q Consensus 318 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~-~~~i~~~~~~s~~itp~l~~~~~ 396 (609)
..+++.||+.+|.+...++++|||+.+++|.- .||..++++|.+....|+-+.+. |.....++++|.++- .
T Consensus 308 ~LifVARPlaV~lsl~~f~~~~rEk~fiSWvG-lRGaVpIvlA~~p~~ag~~~a~~~FnivF~vVl~S~liQ-------G 379 (563)
T PRK05326 308 FLIFVARPLAVFLSLLPFRFNLREKLFISWVG-LRGAVPIILATFPMMAGLPNAQLIFNVAFFVVLVSLLLQ-------G 379 (563)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEHHHHHC-------C
T ss_conf 99999999999999647999888888998863-554067898874876178874213468854300436303-------2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999987543210
Q gi|254780924|r 397 FLQSFLVLRFARVTS 411 (609)
Q Consensus 397 ~l~~~~~~~~~~~~~ 411 (609)
...++..+++....+
T Consensus 380 ~tl~~vAr~L~l~~p 394 (563)
T PRK05326 380 TTLPPAARKLKVVVP 394 (563)
T ss_pred CCHHHHHHHHCCCCC
T ss_conf 537899998189889
No 9
>KOG1650 consensus
Probab=100.00 E-value=6.2e-31 Score=230.09 Aligned_cols=378 Identities=21% Similarity=0.294 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCC----------HHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 79999999999999998708886799999999627410385584----------78999999999999998825416889
Q gi|254780924|r 3 TIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVAS----------QSLVPALAEIGIILLMFGVGLHFSVK 72 (609)
Q Consensus 3 ~l~~~l~~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~i~~----------~~~l~~l~~lgl~~llF~~Gleld~~ 72 (609)
.+.+++++.-++..+.|++|+|.++.++++||++||+.+|-... ...++.++.+|..+++|..|+|+|.+
T Consensus 27 q~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~ 106 (769)
T KOG1650 27 QIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLR 106 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999999972514625299999889605676434711220015650478999999999999999988520188
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 998415158899899999999999999999678-----868------999999999742389999876565541144057
Q gi|254780924|r 73 DLISVRGIALPGALIQIILGTALGALMGMVMGW-----SLG------GSVVFGLALSIASTVVLLKALQENRILETDRGK 141 (609)
Q Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~-----~~~------~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~ 141 (609)
.+|+.+++...+++.++++++..+......+.- .+. .-.....+.+.|+-+++.+.+.|.+..+++.|+
T Consensus 107 ~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Gr 186 (769)
T KOG1650 107 VIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGR 186 (769)
T ss_pred HHHCCCCEEEEEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87105753699988888741454344221100332212354212218888899886402149999999986211102305
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
Q ss_conf 89899877778999999999986134443301356789999887653210147999999984101000010003445438
Q gi|254780924|r 142 IAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPW 221 (609)
Q Consensus 142 ~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (609)
++.+..+++|++++..++.-......... ......+.+.....+........+..+.|
T Consensus 187 la~saa~v~dv~~~~ll~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~v~~p~~~w 244 (769)
T KOG1650 187 LALSAAVVNDVAGWILLALALAFSSELKL----------------------SPLRSVWDLVLVIGFVLFLFFVVRPLMKW 244 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC----------------------CCHHHHHHHHHHHHHHHEEEEECCHHHHH
T ss_conf 34444676668999999999987236777----------------------62177999999999886367631126788
Q ss_pred HHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 77642035-67368999999999999998887411002466666422202761-456899999766-8999999998865
Q gi|254780924|r 222 ILHMIFYT-GSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAESE-LSQSAAQESLPL-RDAFSVLFFISVG 298 (609)
Q Consensus 222 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~-~~~~~~~~~~~~-~~~~~~~fFv~iG 298 (609)
..++.... ...+......+...+..+.......+.++..|+|+.|+.+++.+ +...+.++++.+ .+++.|+||+..|
T Consensus 245 i~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G 324 (769)
T KOG1650 245 IIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISG 324 (769)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 75048678756643216789999999999998540052325260464268899526799999988788899888965415
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 31147988620256777765554221223211000255879999998643212202567889887641787866877877
Q gi|254780924|r 299 MMFNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLIL 378 (609)
Q Consensus 299 ~~l~~~~l~~~~~~~l~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~ 378 (609)
++.|+..+.. |......+....+.|++++...+...|.++|+++.+|..|+++|-+.++....+.+.+.++.+.|..++
T Consensus 325 ~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~v 403 (769)
T KOG1650 325 LKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMV 403 (769)
T ss_pred CCEEHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 2122898888-999999999999999999999999965860688999999865549999998888732765632199999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 8889999999-999986789999999
Q gi|254780924|r 379 ASSIISIILN-PLVFVLAEFLQSFLV 403 (609)
Q Consensus 379 ~~~~~s~~it-p~l~~~~~~l~~~~~ 403 (609)
..+.++..++ |++...+++..++..
T Consensus 404 l~alv~t~I~~~~l~~~y~p~~~~~~ 429 (769)
T KOG1650 404 LMALVSTFITPPLLMFLYDPTRKYHG 429 (769)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHCCC
T ss_conf 99998753299999875640130375
No 10
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.97 E-value=2.1e-27 Score=205.72 Aligned_cols=134 Identities=18% Similarity=0.215 Sum_probs=124.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 34781799737748999999998479908997199899999997699299978999899984893146799993599689
Q gi|254780924|r 446 DLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 446 ~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
..+||+||||||+.|++++++|.++|.+++++|.|++.. ...++.+++.||++|+++|++||+++|+.++++++||.+
T Consensus 202 ~~kdH~IICGyG~~g~~v~~eL~~~g~~vVVI~~~~~~~--~~~~~~~~I~GDaTdd~~L~kAgI~~Ak~VI~~~~~Da~ 279 (356)
T PRK10537 202 HRKDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGEEH--RLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDAD 279 (356)
T ss_pred HCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHH--CCCCCCCEEECCCCCHHHHHHCCCHHHCEEEECCCCCHH
T ss_conf 419968998988379999999997299979994580443--020568879508997899987593450798880787778
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHH
Q ss_conf 99999999995898808999469899999997699878765899999999998742
Q gi|254780924|r 526 AAYITQEARNSNPSILIIALADSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQV 581 (609)
Q Consensus 526 n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~ 581 (609)
|..+++++|+++|+.+++|+++++++.++++++|+|.||+|+...++-+++.+...
T Consensus 280 NvfivLTAR~LnP~v~IVA~a~~~en~~KlrrAGAD~VISP~~lGg~LLA~~l~ge 335 (356)
T PRK10537 280 NAFVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLARTLNGE 335 (356)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCEEECHHHHHHHHHHHHHCCC
T ss_conf 99999849986899769999676757999986289999868887899999984588
No 11
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-24 Score=186.38 Aligned_cols=335 Identities=20% Similarity=0.208 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCCHH--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH
Q ss_conf 7999999999999999870888679999999962741038558478--99999999999999882541688999841515
Q gi|254780924|r 3 TIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQS--LVPALAEIGIILLMFGVGLHFSVKDLISVRGI 80 (609)
Q Consensus 3 ~l~~~l~~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~i~~~~--~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~ 80 (609)
...+++..+...+.+++|+++|.+..+++.|++.||.+++..+++. .-+.+..+.+..++|.+|.|+|.+++|+++++
T Consensus 10 ~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~ 89 (429)
T COG0025 10 LLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRS 89 (429)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999999987614420489999999974666202683101477999999999999998853989999870799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 88998999999999999999996--7886899999999974238999987656554114405789899877778999999
Q gi|254780924|r 81 ALPGALIQIILGTALGALMGMVM--GWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLAL 158 (609)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l--g~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l 158 (609)
+..+++..++++........|++ +++|..|+++|+++++|+|+.+.++.++.+ .+++......+++++||..+++.+
T Consensus 90 I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~giv~f 168 (429)
T COG0025 90 ILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGVGIVLF 168 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999946814899999866616882888899996579-987899999875640006899999
Q ss_pred HHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf 99998613444330-13567899998876532101479999999841010000100034454387764203567368999
Q gi|254780924|r 159 VLIPAAATNYSAEP-SSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRL 237 (609)
Q Consensus 159 ~il~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (609)
.+............ .... ..+.+........+.......+++.++..++. ..+......
T Consensus 169 ~~~l~~~~~~~~~~~~~~~------------------~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~--~~~~~~~~~ 228 (429)
T COG0025 169 KVALAALLGTGAFSLGWAL------------------LLFLIEALGGILLGLLLGYLLGRLLRRLDRRG--WTSPLLETL 228 (429)
T ss_pred HHHHHHHHCCCCCCHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_conf 9999998456765324799------------------99999999999999999999999999999823--340679999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 999999999998887411002466666422202-----761---456899999766899999999886531147988620
Q gi|254780924|r 238 GVLAIALGFAYGSSKLFGVSLSLGAFFAGMILA-----ESE---LSQSAAQESLPLRDAFSVLFFISVGMMFNPDILISN 309 (609)
Q Consensus 238 ~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~-----~~~---~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~ 309 (609)
..+...+ ..+..++..+.|+.+++..+|+..+ +.. .+.+..+..+.+..++..+.|+.+|++++.......
T Consensus 229 i~L~~~~-~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~ 307 (429)
T COG0025 229 LTLLLAF-AAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL 307 (429)
T ss_pred HHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999-999999874760899999998987778875134235899999999999999999999999988458897775
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf -256777765554221223211000255------879999998643212202567889
Q gi|254780924|r 310 -PILLMMAVIIVIIGKALIAFIVVIAFG------RSVATALTIAASLSQIGEFSFILA 360 (609)
Q Consensus 310 -~~~~l~~~~~~~~~k~~~~~~~~~~~~------~~~~~~~~~g~~l~~~g~~~~v~a 360 (609)
++.++......++.|++.++.+....+ .++++++++++.-.+ |..+...+
T Consensus 308 ~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~G~R-G~vsla~a 364 (429)
T COG0025 308 GLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWAGPR-GVVSLALA 364 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-CHHHHHHH
T ss_conf 7999999999999999999999970121125677888889999954644-39999999
No 12
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-25 Score=193.59 Aligned_cols=373 Identities=14% Similarity=0.236 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHH
Q ss_conf 9999999999998708886799999999627410385584--78999999999999998825416889998415158899
Q gi|254780924|r 7 GFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVAS--QSLVPALAEIGIILLMFGVGLHFSVKDLISVRGIALPG 84 (609)
Q Consensus 7 ~l~~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~i~~--~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~~ 84 (609)
.++++.+...++.|++.|-.+.++..|++.|..|+|-++- .+.-..++++++++++|.+|+..+.+.+|...++.+.+
T Consensus 15 lvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsL 94 (574)
T COG3263 15 LVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSL 94 (574)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999987274699999998887077750313116638999998888888741376677188889775125678
Q ss_pred HHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999-999999996788689999999997423899998765655411440578989987777899999999998
Q gi|254780924|r 85 ALIQIILGTA-LGALMGMVMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPA 163 (609)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~~lg~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~ 163 (609)
++.++++|.. .+.+++|.++++|.+++++|++...|+.+.|..++.+++..+.....+..+..-+|.++.....+++..
T Consensus 95 ATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~stLEiESGtNDPmAvfLTitliel 174 (574)
T COG3263 95 ATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGSNDPMAVFLTITLIEL 174 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHEEEECCCCCCEEEEEHHHHHHH
T ss_conf 88889999889999999980638999888877654640899999973587667644437740378986155105899999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 61344433013567899998876532101479999999841010000100034454387764203567368999999999
Q gi|254780924|r 164 AATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIA 243 (609)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 243 (609)
.+...+..... +...++..........+.+.++..+..++.. -...+....++...
T Consensus 175 i~~get~l~~~----------------------~ll~f~~q~glG~l~G~~gg~l~~~~Inr~n--Ld~GL~pil~la~~ 230 (574)
T COG3263 175 IAGGETNLSWG----------------------FLLGFLQQFGLGLLLGLGGGKLLLQLINRIN--LDSGLYPILALAGG 230 (574)
T ss_pred HHCCCCCCCHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHH
T ss_conf 96366667788----------------------9999999970899998878999999986514--66512689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHH
Q ss_conf 9999988874110024666664222027614--568999997668999999998865311479886202-5677776555
Q gi|254780924|r 244 LGFAYGSSKLFGVSLSLGAFFAGMILAESEL--SQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNP-ILLMMAVIIV 320 (609)
Q Consensus 244 ~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~--~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~-~~~l~~~~~~ 320 (609)
+.. +..++..|.|+.++.+++|+.+.|.+. +|.+.++.+.+..+.....|...|....++.+.... +.++..+..+
T Consensus 231 Ll~-fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mi 309 (574)
T COG3263 231 LLI-FSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMI 309 (574)
T ss_pred HHH-HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999-9998771676227999988974787513778889873108999999999999986596550676689999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 422122321100025587999999864321220256788988764178786687-7877888999999999998678999
Q gi|254780924|r 321 IIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQAR-DLILASSIISIILNPLVFVLAEFLQ 399 (609)
Q Consensus 321 ~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~-~~i~~~~~~s~~itp~l~~~~~~l~ 399 (609)
++.||+.+|.+...+|+++||+++++|.-- ||..++++|.+....|.-+.+.| .....++++|..+- ....
T Consensus 310 fvaRP~aV~l~l~Pfrf~~~Ek~fvSWvGL-RGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQ-------G~tl 381 (574)
T COG3263 310 FVARPLAVFLGLIPFRFNRREKLFVSWVGL-RGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQ-------GSTL 381 (574)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHEHHHC-CCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHC-------CCCC
T ss_conf 988689898710553557420231011311-55324567665775688565178642489999999981-------5751
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999875432100
Q gi|254780924|r 400 SFLVLRFARVTSS 412 (609)
Q Consensus 400 ~~~~~~~~~~~~~ 412 (609)
++..++.....+.
T Consensus 382 ~~~a~~l~~i~p~ 394 (574)
T COG3263 382 PWAAKKLKVIVPP 394 (574)
T ss_pred HHHHHHCCCCCCC
T ss_conf 4788744533589
No 13
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.95 E-value=6.5e-27 Score=202.36 Aligned_cols=161 Identities=19% Similarity=0.248 Sum_probs=145.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC--CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHH
Q ss_conf 47817997377489999999984799089971998999999976--9929997899989998489314679999359968
Q gi|254780924|r 447 LCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL--GIDVIYGNATITKILLMANIEKARSLVVSISTAF 524 (609)
Q Consensus 447 ~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~--g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~ 524 (609)
..++|+|+|+|++|+++|+.|+ +++++++||.|+++|+++.++ +..+++||+||+++|+++|++++|+++++|+||+
T Consensus 231 ~~~~v~I~Ggg~ig~~la~~L~-~~~~v~iIe~d~~~~~~la~~l~~~~Vi~GD~td~~~L~e~gi~~aD~~ia~T~~De 309 (455)
T PRK09496 231 PVKRIMIAGGGNIGLYLAKLLE-KGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (455)
T ss_pred CCCEEEEECCCHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCEEEEECCCHH
T ss_conf 6651899878699999999874-088389970898999999974785399978876889997636455648999038818
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCC
Q ss_conf 99999999999589880899946989999999769987876589999999999874210026---787877888730389
Q gi|254780924|r 525 EAAYITQEARNSNPSILIIALADSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHHEKV---TCDRSNKDEIDSKDD 601 (609)
Q Consensus 525 ~n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~~~~~~---~~~~~~~~e~~~~~~ 601 (609)
.|+.+|+.||+++.+ +++++++++++.+.++++|+|.+++|+..++..+.+++++...... ...+.+.-|+..+++
T Consensus 310 ~Ni~~~llAk~~g~~-~~ia~v~~~~y~~l~~~lgid~~isp~~~~a~~I~~~i~~~~v~~~~~l~~~~~evie~~v~~~ 388 (455)
T PRK09496 310 ANILSSLLAKRLGAK-KVIALINRSAYVDLVQGLGIDIAISPRQATISAILRHVRRGDIVAVHSLRRGAAEAIEAVAHET 388 (455)
T ss_pred HHHHHHHHHHHCCCC-CEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 899999999873997-3688844667887653248865788899999999998405684489995599569999997899
Q ss_pred CCCCCCCC
Q ss_conf 60048859
Q gi|254780924|r 602 SSVLSVNL 609 (609)
Q Consensus 602 ~~~~~~~l 609 (609)
++++|+++
T Consensus 389 s~~~gk~i 396 (455)
T PRK09496 389 SKVVGKPL 396 (455)
T ss_pred CCCCCCCH
T ss_conf 93359699
No 14
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.94 E-value=1.9e-25 Score=192.23 Aligned_cols=160 Identities=17% Similarity=0.221 Sum_probs=143.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
Q ss_conf 17997377489999999984799089971998999999976-99299978999899984893146799993599689999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~ 528 (609)
+|+|||+|++|+++|+.|++++++|++||.|+++++++++. +..+++||++++++|++||+++||.+|++|++|+.|+.
T Consensus 2 ~IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~~~~~~~~~~lDv~~i~Gd~~~~~~L~~Agi~~ad~~IAvT~~De~Nli 81 (455)
T PRK09496 2 KIIILGAGQVGGTLAERLVGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSHPDVLREAGAEDADMLIAVTDSDETNMV 81 (455)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCCCCEEEEECCCHHHHHH
T ss_conf 79999988899999999986899799998999999998862586899966899999996599869999995797189999
Q ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHH------HHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHC
Q ss_conf 999999958988089994698999999------976998787658999999999987421002678---78778887303
Q gi|254780924|r 529 ITQEARNSNPSILIIALADSDSEVEHL------TRYGADTVVMSAREIALGMLDRLNQVHHEKVTC---DRSNKDEIDSK 599 (609)
Q Consensus 529 ~~~~~~~~~~~~~iia~~~~~~~~~~l------~~~Ga~~vi~p~~~~a~~~~~~l~~~~~~~~~~---~~~~~~e~~~~ 599 (609)
+|+.||++++..++|||++|+++.+.. +..|+|.+++|+..+|+++++.+..+....... .+...-+++..
T Consensus 82 ~~~lAk~l~g~~~tIaRv~n~ey~~~~~~~~~~~~lgid~iI~Pe~~~a~~I~~~i~~p~a~~v~~f~~G~~~l~~~~v~ 161 (455)
T PRK09496 82 ACQIAKSLFGTPTKIARIRNPEYLREYPKLFNKEALGIDVLISPELLVAREIARLIEYPGALQVEEFADGRVQLVGVKVY 161 (455)
T ss_pred HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEEC
T ss_conf 99999986699824999747776430444200114786489878299999999984388707888824884599999978
Q ss_pred CCCCCCCCCC
Q ss_conf 8960048859
Q gi|254780924|r 600 DDSSVLSVNL 609 (609)
Q Consensus 600 ~~~~~~~~~l 609 (609)
++|++.|++|
T Consensus 162 ~~splvGk~L 171 (455)
T PRK09496 162 EGSPLVGKAL 171 (455)
T ss_pred CCCCCCCCCH
T ss_conf 9992478498
No 15
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.5e-24 Score=186.12 Aligned_cols=160 Identities=22% Similarity=0.295 Sum_probs=145.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH--CCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 1799737748999999998479908997199899999997--69929997899989998489314679999359968999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS--LGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~--~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
.++|+|.|++|+.+|+.|.++|+++++||.|++++++... .+.+++.||++|+++|+++|++++|+++++|++|+.|+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N~ 81 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVNS 81 (225)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCHHHH
T ss_conf 89998985788999999987899089997688999986320004499992688989998679863899999808867999
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCCC
Q ss_conf 999999995898808999469899999997699878765899999999998742100267878---77888730389600
Q gi|254780924|r 528 YITQEARNSNPSILIIALADSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHHEKVTCDR---SNKDEIDSKDDSSV 604 (609)
Q Consensus 528 ~~~~~~~~~~~~~~iia~~~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~~~~~~~~~~---~~~~e~~~~~~~~~ 604 (609)
.+|+.+++.+...+++||+++++|.+.+++.|+|.+++|+..++..+++.+.++....+.... ...-++...+++++
T Consensus 82 i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (225)
T COG0569 82 VLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVTPGALDVLELAGGDAEVIEEKVAEDSPL 161 (225)
T ss_pred HHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCHHEEEECCCCCCEEEEEEECCCCCC
T ss_conf 99999998739984999956941677898679948975589999999998538863103442699723899993589825
Q ss_pred CCCCC
Q ss_conf 48859
Q gi|254780924|r 605 LSVNL 609 (609)
Q Consensus 605 ~~~~l 609 (609)
.|++|
T Consensus 162 ~g~~L 166 (225)
T COG0569 162 AGKTL 166 (225)
T ss_pred CCCCH
T ss_conf 77598
No 16
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=99.92 E-value=3.3e-24 Score=183.75 Aligned_cols=115 Identities=36% Similarity=0.590 Sum_probs=113.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHH
Q ss_conf 79973774899999999847990899719989999999769929997899989998489314679999359968999999
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYIT 530 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~ 530 (609)
|+|||+|++|+.+++.|++++ +|++||.|++++++++++|+++++||++|+++|+++++++|+.++++++||+.|..++
T Consensus 1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~ 79 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEAGIEDADAVVAATGDDEANILIV 79 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHHHHHHH
T ss_conf 999878889999999998089-9999999879987788669869999568866787619202879999629849999999
Q ss_pred HHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECH
Q ss_conf 999995898808999469899999997699878765
Q gi|254780924|r 531 QEARNSNPSILIIALADSDSEVEHLTRYGADTVVMS 566 (609)
Q Consensus 531 ~~~~~~~~~~~iia~~~~~~~~~~l~~~Ga~~vi~p 566 (609)
+++|+.+|+.++++|++++++.+.|+++|+|+|++|
T Consensus 80 ~~~r~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~P 115 (115)
T pfam02254 80 LLARELNPAKKIIARANDPEHAELLRRLGADEVISP 115 (115)
T ss_pred HHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECC
T ss_conf 999997899809999878999999997698999792
No 17
>TIGR00831 a_cpa1 Na+/H+ antiporter; InterPro: IPR004705 Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport . This group is specific for the bacterial members of this family. .
Probab=99.75 E-value=6.8e-16 Score=126.39 Aligned_cols=265 Identities=18% Similarity=0.177 Sum_probs=179.3
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH-
Q ss_conf 999870888679999999962741038-558478999999999999998825416889998415158899899999999-
Q gi|254780924|r 16 AIANRCRLPTLIGYLVAGILVGPRTPG-FVASQSLVPALAEIGIILLMFGVGLHFSVKDLISVRGIALPGALIQIILGT- 93 (609)
Q Consensus 16 ~la~rl~lP~i~~~il~GillGp~~l~-~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~~~~~~~~~~~- 93 (609)
...+++|+|+.+.+++.|.++|-.++. -++-+..+-+ -+-+==++|..|+++|++++|++.|.+..+++..++.|.
T Consensus 15 v~v~~~r~p~p~~lil~G~llgl~~~~~~V~~d~E~vl--~lFlPplLf~~~mnt~~rE~ren~r~I~~~a~~lVvvT~v 92 (541)
T TIGR00831 15 VLVKRYRVPLPVLLILAGALLGLAGLLLEVELDREVVL--LLFLPPLLFEEAMNTDLRELRENLREIVLLALALVVVTVV 92 (541)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEE--HHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56556645657999999999976304677222750220--2031178889850788589988215999999988998775
Q ss_pred HHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCC
Q ss_conf 99999999-96788689999999997423899998765655411440578989987777899999999998613-44433
Q gi|254780924|r 94 ALGALMGM-VMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAAT-NYSAE 171 (609)
Q Consensus 94 ~~~~~~~~-~lg~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~-~~~~~ 171 (609)
.+++.+.| .+|.|...|+.+|+.+|+|+++.+..+.++.+..+ +.-.+.-|++++||-.+++.+.+-...+. .....
T Consensus 93 ~vgf~~~Wv~lGipl~~A~~lgAvlSpTDavav~g~~k~~r~Pk-k~~~~l~GEsl~NDg~alV~fa~avava~G~~~f~ 171 (541)
T TIGR00831 93 AVGFSLRWVVLGIPLALALVLGAVLSPTDAVAVAGLVKEIRLPK-KLLIVLEGESLLNDGAALVVFAVAVAVALGKAVFD 171 (541)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 46667766741736899999987617320899999841344237-88999722245642899999999999971532110
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 01356789999887653210147999999984101000010003445438776420356-73689999999999999988
Q gi|254780924|r 172 PSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTG-SRELFRLGVLAIALGFAYGS 250 (609)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 250 (609)
.......+... .++...+ ++...|+..+-+|+..+.+ +.-+.-.....+....++.+
T Consensus 172 p~~a~~~F~vv-----------------~~GGi~a-----Gl~Vg~L~~RslrfllR~~iD~pl~eial~~l~pfa~fll 229 (541)
T TIGR00831 172 PAAAVVEFVVV-----------------AVGGILA-----GLVVGYLVTRSLRFLLRAKIDEPLVEIALLLLAPFAAFLL 229 (541)
T ss_pred HHHHHHHHHHH-----------------HHHHHHH-----HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 57889989998-----------------8889999-----9999999999999998613672789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCH------HHHH--HHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 874110024666664222027614------5689--999976689999999988653114798
Q gi|254780924|r 251 SKLFGVSLSLGAFFAGMILAESEL------SQSA--AQESLPLRDAFSVLFFISVGMMFNPDI 305 (609)
Q Consensus 251 ~~~~g~s~~lgaf~aG~~l~~~~~------~~~~--~~~~~~~~~~~~~~fFv~iG~~l~~~~ 305 (609)
++.++.|+++++..+|+++++... +.++ .+..+-+..++....|+.+|.++....
T Consensus 230 Ae~~~~SGv~Avvaagl~lt~~G~~~~~~~~~Rl~a~~fW~~~~Fl~Ng~~f~l~Gvq~pg~i 292 (541)
T TIGR00831 230 AERLKVSGVVAVVAAGLVLTRVGRDFSISAASRLRALDFWSVLVFLVNGIVFVLVGVQLPGII 292 (541)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 978087678899999898705687303238778879768999999998899899860314799
No 18
>TIGR00844 c_cpa1 sodium/hydrogen antiporter; InterPro: IPR004712 Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport . This group is specific for the fungal members of this family. ; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane.
Probab=99.72 E-value=2.9e-15 Score=122.04 Aligned_cols=334 Identities=16% Similarity=0.113 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCCHH------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHH
Q ss_conf 999999999870888679999999962741038558478------99999999999999882541688999841515889
Q gi|254780924|r 10 LAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQS------LVPALAEIGIILLMFGVGLHFSVKDLISVRGIALP 83 (609)
Q Consensus 10 ~a~i~g~la~rl~lP~i~~~il~GillGp~~l~~i~~~~------~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~ 83 (609)
.+++.-++=.|+-+-.-.--=++|+++||++|||..|-. ..-.++.+-+++-.|.+..|+.-|.+.|.|-.+..
T Consensus 26 FSLVSLfVKE~LYIGES~VA~iFGLIVGP~CLNWFNPL~WGN~DSITLEI~RI~LCLQvFAV~VELPRKYMlKHWvSVTM 105 (923)
T TIGR00844 26 FSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVTM 105 (923)
T ss_pred HHHHHHHHHHHHEECHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99988777521010302412331010257101546776667752037789999999877875210204454566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999999996--7886899999999974238999987656554--1144057898998777789999999
Q gi|254780924|r 84 GALIQIILGTALGALMGMVM--GWSLGGSVVFGLALSIASTVVLLKALQENRI--LETDRGKIAVGWLIVEDLIIVLALV 159 (609)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l--g~~~~~all~g~~l~~ts~~vv~~~l~~~~~--~~~~~g~~~~~~~~~~Di~~i~~l~ 159 (609)
+-+.-+.-.+++..++.|.| |++++.++++|+++++|+|.....+..-+=. ..-....+.-..+-.+|-.++|++.
T Consensus 106 LL~PVMT~GWLvIaLFVWILvPGLNF~ASLL~~ACITATDPvLAQSVVSG~FAQ~VPGHLRNLLS~ESGCNDGlA~PF~F 185 (923)
T TIGR00844 106 LLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLLSCESGCNDGLAFPFVF 185 (923)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHEEHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 88777666799999998887067633479998523420261010010026322467615666654303667641454899
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCC--CCCHHHHHH
Q ss_conf 999861344433013567899998876532101479999999841010000100034454387764203--567368999
Q gi|254780924|r 160 LIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFY--TGSRELFRL 237 (609)
Q Consensus 160 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 237 (609)
+-.-+... ..-.....-.++=.+++.-..|+.+.+.+-.|..+...|+.-. .-++|.|..
T Consensus 186 LS~~LlLy------------------PG~G~~IVKDWICVTIL~EC~FG~~LGC~IGY~GR~~IRFAE~k~IIDRESFLA 247 (923)
T TIGR00844 186 LSLDLLLY------------------PGRGGEIVKDWICVTILWECIFGSILGCIIGYVGRKAIRFAEGKNIIDRESFLA 247 (923)
T ss_pred HHHHHHCC------------------CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCEECCHHHHHH
T ss_conf 98997505------------------899972454031357799889877887664321002210212661111355899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHH-HHHHHHHH-HHHHHHHHHHHHHHHCCHHHHH------H
Q ss_conf 9999999999988874110024666664222027614-568-99999766-8999999998865311479886------2
Q gi|254780924|r 238 GVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAESEL-SQS-AAQESLPL-RDAFSVLFFISVGMMFNPDILI------S 308 (609)
Q Consensus 238 ~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~-~~~-~~~~~~~~-~~~~~~~fFv~iG~~l~~~~l~------~ 308 (609)
..+.+++ .++++..++|+.-.|-.|.||-..+-... ..+ -+...... .-++..-+|+++|.-+-+..+- .
T Consensus 248 FY~iLAl-~CAGFGS~LGVDDLLVSF~AG~~FAWDGWFa~KT~ESNVS~VID~LLNYAYFvYlG~IlPW~~FNN~~IG~~ 326 (923)
T TIGR00844 248 FYLILAL-TCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLD 326 (923)
T ss_pred HHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 9999999-741432033477899988742012220024203331212579999988899998602056000577333347
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 02567777655542212232110002--55879999998643212202567889887
Q gi|254780924|r 309 NPILLMMAVIIVIIGKALIAFIVVIA--FGRSVATALTIAASLSQIGEFSFILANLG 363 (609)
Q Consensus 309 ~~~~~l~~~~~~~~~k~~~~~~~~~~--~~~~~~~~~~~g~~l~~~g~~~~v~a~~a 363 (609)
.|-.+++-++++++-|+-+++..--+ -=.+|||++++|=-- |.|.-++..|..+
T Consensus 327 VWRLIiLSlVVIFLRRIPAVl~L~PLIPDIKSWREA~FiGHFG-PIGVGAvfAAI~~ 382 (923)
T TIGR00844 327 VWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREALFIGHFG-PIGVGAVFAAILS 382 (923)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC-CHHHHHHHHHHHH
T ss_conf 9999999999999853114641047888502145553114657-5038999999852
No 19
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.3e-15 Score=121.70 Aligned_cols=141 Identities=38% Similarity=0.547 Sum_probs=132.3
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC
Q ss_conf 32134781799737748999999998479908997199899999997699299978999899984893146799993599
Q gi|254780924|r 443 QKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIST 522 (609)
Q Consensus 443 ~~~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~ 522 (609)
......+|+++||+|+.|+.+++.|...+.+++++|.|++.++.++..++.+++||++++++|+++++++++.++.++++
T Consensus 16 ~~~~l~~~~ii~g~~~~~~~~~~~l~~~~~~~~vi~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~a~~~~a~~vi~~~~~ 95 (212)
T COG1226 16 AIVRLKRHVIIVGFGRVGQIVARALLASGIPVVVIDSDEDRVELLRELGLLVVLGDATREEVLEAAGIERARAVIVTLSD 95 (212)
T ss_pred HHHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHCHHHHEEEEEEECC
T ss_conf 78761665999713189999999998538649999677788999997694799834533999985266531399998076
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 68999999999995898808999469-89999999769987876589999999999874210
Q gi|254780924|r 523 AFEAAYITQEARNSNPSILIIALADS-DSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHH 583 (609)
Q Consensus 523 ~~~n~~~~~~~~~~~~~~~iia~~~~-~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~~~ 583 (609)
+..|..++..++..+|+.+++++.++ ..+.+.+...|+|.++.|+...+..+.+.......
T Consensus 96 ~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~ 157 (212)
T COG1226 96 DATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLG 157 (212)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHH
T ss_conf 88899999999986899639999804367778998739980773225557899999887642
No 20
>KOG1965 consensus
Probab=99.70 E-value=3.5e-14 Score=114.59 Aligned_cols=317 Identities=15% Similarity=0.214 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHCCHHCCCCCCH--H---H-----HHHHHHHHHHHHHHHHHHCC
Q ss_conf 79999999999999998708---8867999999996274103855847--8---9-----99999999999998825416
Q gi|254780924|r 3 TIIWGFVLAFIFGAIANRCR---LPTLIGYLVAGILVGPRTPGFVASQ--S---L-----VPALAEIGIILLMFGVGLHF 69 (609)
Q Consensus 3 ~l~~~l~~a~i~g~la~rl~---lP~i~~~il~GillGp~~l~~i~~~--~---~-----l~~l~~lgl~~llF~~Glel 69 (609)
..+..++++.+++++.++.| +|.-+.-++.|+++|-. ....+.. + . -+.+-.+-+--+.|+.|.++
T Consensus 39 ~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~v-i~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~l 117 (575)
T KOG1965 39 FFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLV-IRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYSL 117 (575)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHCCCCCCCCCCEEEEECCCHHHHHHHCHHHHCCCCEE
T ss_conf 9999999999999998743422045689999999999888-511478766555236884532788875035663354342
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 8899984151588998999999999999999996-------788689999999997423899998765655411440578
Q gi|254780924|r 70 SVKDLISVRGIALPGALIQIILGTALGALMGMVM-------GWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKI 142 (609)
Q Consensus 70 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------g~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~ 142 (609)
+-+.+.++...+...+..++.++..+.....|.+ +++|..++.+|+++++|+|+.++.++++.+.... .-.+
T Consensus 118 ~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~vd~~-Ly~L 196 (575)
T KOG1965 118 KKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGVDPK-LYTL 196 (575)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC-EEEE
T ss_conf 413654406878876623504105478667998821001355649999987557505681478999887387821-0012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf 98998777789999999999861344433013567899998876532101479999999841010000100034454387
Q gi|254780924|r 143 AVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWI 222 (609)
Q Consensus 143 ~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (609)
+.|+++.+|..+|++...+................. ..+...+......+...++..-+ +
T Consensus 197 VFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~i----------------g~Fl~~F~gS~~lGv~~GlisA~----~ 256 (575)
T KOG1965 197 VFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAI----------------GNFLYTFFGSLGLGVAIGLISAL----V 256 (575)
T ss_pred EECCHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHH----H
T ss_conf 323211034157789999999714782155699999----------------99999999999999999999999----9
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 76420356736899999999999999888741100246666642220276145-------68999997668999999998
Q gi|254780924|r 223 LHMIFYTGSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAESELS-------QSAAQESLPLRDAFSVLFFI 295 (609)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~~-------~~~~~~~~~~~~~~~~~fFv 295 (609)
.|+..-.+++..-....+.... ..+..+|+.++|+++..+.-|+++++..+. ....+....+..+--.+.|.
T Consensus 257 lK~~~l~~~~~lE~al~ll~sY-~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~ 335 (575)
T KOG1965 257 LKFLYLRRTPSLESALMLLMSY-LSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFI 335 (575)
T ss_pred HHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998705783799999999999-999999885501199999999999998886078788888999999999999999999
Q ss_pred HHHHH-CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 86531-147988620-256777765554221223211000255879999
Q gi|254780924|r 296 SVGMM-FNPDILISN-PILLMMAVIIVIIGKALIAFIVVIAFGRSVATA 342 (609)
Q Consensus 296 ~iG~~-l~~~~l~~~-~~~~l~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 342 (609)
++|+. ++....... ++.+......+.++|..-++.......+..|.+
T Consensus 336 Y~Gl~~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k 384 (575)
T KOG1965 336 YLGLSAFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHK 384 (575)
T ss_pred HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 9767775101013410279999999999777887630998877775044
No 21
>KOG4505 consensus
Probab=99.61 E-value=7.7e-13 Score=105.32 Aligned_cols=328 Identities=14% Similarity=0.132 Sum_probs=209.9
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCHHCCCCCCHH------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
Q ss_conf 999870888679999999962741038558478------99999999999999882541688999841515889989999
Q gi|254780924|r 16 AIANRCRLPTLIGYLVAGILVGPRTPGFVASQS------LVPALAEIGIILLMFGVGLHFSVKDLISVRGIALPGALIQI 89 (609)
Q Consensus 16 ~la~rl~lP~i~~~il~GillGp~~l~~i~~~~------~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~~~~~~~ 89 (609)
.+-+++-+...+---++|+++||+.+|+.++.. ....++.+-+..-.|..++|+.-+...+.|+.++.+-..-+
T Consensus 31 yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVm 110 (467)
T KOG4505 31 YIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVM 110 (467)
T ss_pred HHHHHHHCCCHHHHHHHHEEECHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99876732630776642205535566410776336743111413456575999999985559999998899999999999
Q ss_pred HHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999996--78868999999999742389999876565541144---05789899877778999999999986
Q gi|254780924|r 90 ILGTALGALMGMVM--GWSLGGSVVFGLALSIASTVVLLKALQENRILETD---RGKIAVGWLIVEDLIIVLALVLIPAA 164 (609)
Q Consensus 90 ~~~~~~~~~~~~~l--g~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~---~g~~~~~~~~~~Di~~i~~l~il~~~ 164 (609)
...+.+.+.+.|.+ +++...++++++.+++|+|.....+..+.+..+.. ...+..+.+-.+|-.+++++.+-.-+
T Consensus 111 i~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~L 190 (467)
T KOG4505 111 IIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDL 190 (467)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999999899998166217889999877368862578887467647665819999999886078777413699999999
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHC--CCCCHHHHHHHHHHH
Q ss_conf 134443301356789999887653210147999999984101000010003445438776420--356736899999999
Q gi|254780924|r 165 ATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIF--YTGSRELFRLGVLAI 242 (609)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 242 (609)
......- .....+....++.-..+....+..-.++.+...|+.. +..++|.+....+..
T Consensus 191 l~h~~~r-------------------~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl 251 (467)
T KOG4505 191 LRHKPRR-------------------KAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVL 251 (467)
T ss_pred HHCCCHH-------------------CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8147402-------------------057763036779999999999999999999999999982431078999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHH-HHHHHHH-HHHHHHHHHHHHHHHCCHHHHH------HHHHHH
Q ss_conf 99999988874110024666664222027614-5689-9999766-8999999998865311479886------202567
Q gi|254780924|r 243 ALGFAYGSSKLFGVSLSLGAFFAGMILAESEL-SQSA-AQESLPL-RDAFSVLFFISVGMMFNPDILI------SNPILL 313 (609)
Q Consensus 243 ~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~~-~~~~-~~~~~~~-~~~~~~~fFv~iG~~l~~~~l~------~~~~~~ 313 (609)
.+. +.+..+..|.+-.+..|.||...+-.+. .++. +.+...+ ...+...||++.|+.++++.+- +.|-.+
T Consensus 252 ~lf-c~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlv 330 (467)
T KOG4505 252 ALF-CMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLV 330 (467)
T ss_pred HHH-HHHHHHEECHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHH
T ss_conf 999-8546660261589999970031045577665211023779999999999999851334644247765674488999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 7776555422122321100025--58799999986432122025678898876
Q gi|254780924|r 314 MMAVIIVIIGKALIAFIVVIAF--GRSVATALTIAASLSQIGEFSFILANLGV 364 (609)
Q Consensus 314 l~~~~~~~~~k~~~~~~~~~~~--~~~~~~~~~~g~~l~~~g~~~~v~a~~a~ 364 (609)
..-+...+.-|+..++..-..- -.+|||+++.|.-- |.|.-++..+..|.
T Consensus 331 ilsi~iif~RRip~v~l~kp~iPdikswkEALFvGhFG-PIGVgAly~allar 382 (467)
T KOG4505 331 ILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGHFG-PIGVGALYYALLAR 382 (467)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCC-CCCHHHHHHHHHHH
T ss_conf 99999997406663788356784066689988731477-72188999999987
No 22
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3; InterPro: IPR004709 Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport . ; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane.
Probab=99.28 E-value=1.8e-09 Score=82.15 Aligned_cols=357 Identities=15% Similarity=0.159 Sum_probs=202.1
Q ss_pred HHHHHHHHHHC--CCCHHHHHHHHHHHHCCHHCCCC----CCHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHCCHHH
Q ss_conf 99999999870--88867999999996274103855----84789999--999999999988254168899984151588
Q gi|254780924|r 11 AFIFGAIANRC--RLPTLIGYLVAGILVGPRTPGFV----ASQSLVPA--LAEIGIILLMFGVGLHFSVKDLISVRGIAL 82 (609)
Q Consensus 11 a~i~g~la~rl--~lP~i~~~il~GillGp~~l~~i----~~~~~l~~--l~~lgl~~llF~~Gleld~~~l~~~~~~~~ 82 (609)
+++.=++.+|. .+|.=+..|+.|+++|--.-+.- .++..++. +=.+=+==|...+|.+++-+++-++-..++
T Consensus 21 ~Ki~fHl~~k~~~~vPES~LLi~~G~l~G~ii~~~~~hYi~~p~~l~s~~FF~~LLPPIvLdaGY~m~~r~Ff~Nlg~IL 100 (627)
T TIGR00840 21 AKIGFHLTHKVLRVVPESVLLIVYGLLVGGIIKALDHHYIIDPPTLDSSLFFLYLLPPIVLDAGYFMPKREFFENLGSIL 100 (627)
T ss_pred HHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 74442030101001306899999999999999734885661587206221353404056753011147740356689999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----H-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99899999999999999999----6-----78868999999999742389999876565541144057898998777789
Q gi|254780924|r 83 PGALIQIILGTALGALMGMV----M-----GWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLI 153 (609)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~----l-----g~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~ 153 (609)
.-|.+|.+......+...|. . ..++...+++|+++|+++|..|..+..|.+..+..+ .++.|++++||..
T Consensus 101 ~fAv~GT~~~A~~~G~~lY~i~~~~~~~~~~IglLd~llfGsliSAVDPVaVLavFeE~~V~~~L~-iliFGESLLNDAv 179 (627)
T TIGR00840 101 LFAVVGTLINAFVLGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEELHVNEKLY-ILIFGESLLNDAV 179 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEE-EEEECHHHHCCHH
T ss_conf 999999999999999999999997502301055899999999986315147887887552187114-7875233330425
Q ss_pred HHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCC
Q ss_conf 99999999986134--4433013567899998876532101479999999841010000100034454387764203567
Q gi|254780924|r 154 IVLALVLIPAAATN--YSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGS 231 (609)
Q Consensus 154 ~i~~l~il~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (609)
.+++.-+....... +..........+..... ......+.+...+... ++ +.-...|+....+.
T Consensus 180 tvVLY~~~~~f~~~sD~~~e~~t~vdv~~G~~~-fF~v~~G~G~L~Gv~~----------G~----~~af~~rft~~~rY 244 (627)
T TIGR00840 180 TVVLYNTFEKFIKLSDASDEAVTIVDVVEGCVS-FFVVTLGVGLLVGVVF----------GF----LVAFITRFTKHIRY 244 (627)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHH-HHHHHHHHHHHHHHHH----------HH----HHHHHHHHCCCCCC
T ss_conf 678999999984004688652133203324544-6666454889999999----------99----99999751045204
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHH----HHHHHHHHHHHHHHHC-CH
Q ss_conf 368999999999999998887411002466666422202761---456899999766----8999999998865311-47
Q gi|254780924|r 232 RELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAESE---LSQSAAQESLPL----RDAFSVLFFISVGMMF-NP 303 (609)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~---~~~~~~~~~~~~----~~~~~~~fFv~iG~~l-~~ 303 (609)
+..- ....++..-.+++.+|...+|++++-..-|++++..- ..++-+--+..+ ...--.+.|+++|.+. +-
T Consensus 245 P~IE-P~fvl~~sYlsYL~aE~~hlSGIlA~~~Cg~~m~~Yv~~N~S~~S~~TikY~~K~lsS~SEt~IFifLGvs~V~~ 323 (627)
T TIGR00840 245 PVIE-PLFVLLISYLSYLLAETLHLSGILALIFCGITMKKYVEANISRESETTIKYFMKMLSSLSETLIFIFLGVSLVSE 323 (627)
T ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6520-489999999999998778899999999989999888875213313789999999887788999999872420056
Q ss_pred HHHHHHH--HHHHHHHHHHH---------------HHHHHHHHHHHCCCC--------CCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9886202--56777765554---------------221223211000255--------8799999986432122025678
Q gi|254780924|r 304 DILISNP--ILLMMAVIIVI---------------IGKALIAFIVVIAFG--------RSVATALTIAASLSQIGEFSFI 358 (609)
Q Consensus 304 ~~l~~~~--~~~l~~~~~~~---------------~~k~~~~~~~~~~~~--------~~~~~~~~~g~~l~~~g~~~~v 358 (609)
...+ +| ..+...+.... +-|.+++....+..+ ++.++.+.+.++.- ||..++-
T Consensus 324 ~~~w-~w~~~fv~~Tl~~C~aRWCavfPLsqfvnWiyR~~~v~~l~~~~N~f~S~~~~~~~~DQ~~~~yaGl-RGAv~f~ 401 (627)
T TIGR00840 324 NHEW-NWPLAFVVVTLVFCVARWCAVFPLSQFVNWIYRVLGVLTLSWILNEFRSVKVELPFKDQLVIFYAGL-RGAVAFA 401 (627)
T ss_pred CEEE-EHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECHH-HHHHHHH
T ss_conf 1267-3028999999999863354522268899999999999999887515320102115312177862126-7899999
Q ss_pred HHHHHHHCCCCCHHHH--HHHHHHHHHHHHH
Q ss_conf 8988764178786687--7877888999999
Q gi|254780924|r 359 LANLGVELGILPDQAR--DLILASSIISIIL 387 (609)
Q Consensus 359 ~a~~a~~~g~i~~~~~--~~i~~~~~~s~~i 387 (609)
+ ....+...++.+-+ +..+.++.+|.++
T Consensus 402 L-~~lld~~~~~~K~lfvtt~L~V~f~TVi~ 431 (627)
T TIGR00840 402 L-ALLLDEKIFPAKKLFVTTTLVVVFFTVIF 431 (627)
T ss_pred H-HHHCCCCCCCCCHHHHEEEEEEEEEEEEE
T ss_conf 9-88504443531003310000167766324
No 23
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.63 E-value=3.4e-05 Score=52.63 Aligned_cols=262 Identities=15% Similarity=0.163 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHH----HHHCCHH--HHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHH
Q ss_conf 9999999999999882541688999----8415158--899899999999999999999-----6788689999999997
Q gi|254780924|r 50 VPALAEIGIILLMFGVGLHFSVKDL----ISVRGIA--LPGALIQIILGTALGALMGMV-----MGWSLGGSVVFGLALS 118 (609)
Q Consensus 50 l~~l~~lgl~~llF~~Gleld~~~l----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----lg~~~~~all~g~~l~ 118 (609)
.+...+-=+++..|.+|+|+.-+-+ ++.++.. ...++.+++.|..+-....+- -||.. -+
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGm~vPAlIY~~~n~~~~~~~~GW~I---------P~ 130 (388)
T PRK09561 60 LLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADPITREGWAI---------PA 130 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC---------CC
T ss_conf 999865799999999999999998738779878988789999805509899897410588542356342---------35
Q ss_pred HHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4238999987656554-114405789899877778999999999986134443301356789999887653210147999
Q gi|254780924|r 119 IASTVVLLKALQENRI-LETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLI 197 (609)
Q Consensus 119 ~ts~~vv~~~l~~~~~-~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (609)
.|+.+...-++.-.+. .........+.-+++||+.++.+.++.- +.+.. .. .+
T Consensus 131 ATDIAFAlgvLallg~rvP~~lrvFLlaLAIvDDlgAIlVIAiFY---t~~i~-~~----------------------~L 184 (388)
T PRK09561 131 ATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFY---TNDLS-MA----------------------SL 184 (388)
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEC---CCCCC-HH----------------------HH
T ss_conf 205999999999955668879999999999986311124667530---78866-99----------------------99
Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----
Q ss_conf 999984101000010003445438776420356736899999999999999888741100246666642220276-----
Q gi|254780924|r 198 MITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAES----- 272 (609)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~----- 272 (609)
..... ....... .++. +.++.-.+...... .|......|.++.++..+.|+.++..
T Consensus 185 ~~a~~----~~~~l~~---------ln~~-~v~~~~~Y~~lG~~-----lW~~~~~SGvHaTiAGV~la~~iP~~~~~~~ 245 (388)
T PRK09561 185 GVAAV----AIAVLAV---------LNLC-GVRRTGVYILVGVV-----LWTAVLKSGVHATLAGVIVGFFIPLKEKHGR 245 (388)
T ss_pred HHHHH----HHHHHHH---------HHHC-CCCCHHHHHHHHHH-----HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999----9999999---------9984-99614799999999-----9999985045189998999950366655678
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCC----------CCCH
Q ss_conf 14568999997668999999998865311479--8862-025677776555422122321100025----------5879
Q gi|254780924|r 273 ELSQSAAQESLPLRDAFSVLFFISVGMMFNPD--ILIS-NPILLMMAVIIVIIGKALIAFIVVIAF----------GRSV 339 (609)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~--~l~~-~~~~~l~~~~~~~~~k~~~~~~~~~~~----------~~~~ 339 (609)
...+++++.+.|...+++...|...-+.++++ .+.. .......+.+..+++|+++++..++.. +.+|
T Consensus 246 sp~~rleh~l~p~v~~~ilPlFAfaNAGV~l~~~~~~~l~~~v~lGI~~GL~iGK~lGI~~~~~la~kl~~a~lP~~~~w 325 (388)
T PRK09561 246 SPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTY 325 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 96999998751047889889999850475646663776417489999999981642879999999998276779999988
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999864321220256788988764
Q gi|254780924|r 340 ATALTIAASLSQIGEFSFILANLGVE 365 (609)
Q Consensus 340 ~~~~~~g~~l~~~g~~~~v~a~~a~~ 365 (609)
++-.-.|+.---+=..|+-++..|.+
T Consensus 326 ~~l~gv~~LaGIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 326 QQIMAVGILCGIGFTMSIFIASLAFG 351 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999988889999999985268
No 24
>KOG1966 consensus
Probab=98.55 E-value=2.1e-07 Score=67.90 Aligned_cols=312 Identities=14% Similarity=0.152 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHH---HCC--CCHHHHHHHHHHHHCCHHCCCCCC-HHHHH--HHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999999999998---708--886799999999627410385584-78999--999999999998825416889998
Q gi|254780924|r 4 IIWGFVLAFIFGAIAN---RCR--LPTLIGYLVAGILVGPRTPGFVAS-QSLVP--ALAEIGIILLMFGVGLHFSVKDLI 75 (609)
Q Consensus 4 l~~~l~~a~i~g~la~---rl~--lP~i~~~il~GillGp~~l~~i~~-~~~l~--~l~~lgl~~llF~~Gleld~~~l~ 75 (609)
+.+-+++|-++-..++ +++ +|.-...|+.|+++|-...+.-.. +..++ .+--.=+--|+|.+|.-+.-+.+-
T Consensus 44 i~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff 123 (670)
T KOG1966 44 ITLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRAFF 123 (670)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCHHHH
T ss_conf 47999999988860056642000176067999999999998876541565545643037665489886052237537887
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHH------HHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 41515889989999999999999999------967--8868999999999742389999876565541144057898998
Q gi|254780924|r 76 SVRGIALPGALIQIILGTALGALMGM------VMG--WSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWL 147 (609)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~lg--~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~ 147 (609)
++...++..+.+|.+.......+..| .++ .+...-+++|..++.-+|+.|..+..|....+..+ .++.|.+
T Consensus 124 ~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSlIsAVDPVAVLaVFEEihVNe~Lf-I~VFGES 202 (670)
T KOG1966 124 ENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLF-IIVFGES 202 (670)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE-EEEEHHH
T ss_conf 401422447889989999999999999988632277810999999999987358455202344424461798-6542045
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHC
Q ss_conf 77778999999999986134443301356789999887653210147999999984101000010003445438776420
Q gi|254780924|r 148 IVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIF 227 (609)
Q Consensus 148 ~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (609)
+++|...+++.-........++............ ........++.....++ .++....-|+..
T Consensus 203 LlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~----~sFfvVslGG~lvGivf-------------afl~sl~tkft~ 265 (670)
T KOG1966 203 LLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGV----VSFFVVSLGGALVGIVF-------------AFLASLVTKFTK 265 (670)
T ss_pred HHCCCEEEEHHHHHHHHHHHCCCCEEEEEEECCE----EEEEEEECCCHHHHHHH-------------HHHHHHHHHHHC
T ss_conf 5167269861998999997430442576410240----27999961731099999-------------999999987634
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 3567368999999999999998887411002466666422202761---456899999----766899999999886531
Q gi|254780924|r 228 YTGSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAESE---LSQSAAQES----LPLRDAFSVLFFISVGMM 300 (609)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~---~~~~~~~~~----~~~~~~~~~~fFv~iG~~ 300 (609)
..+..| ....++..-++++.+|+.++|++++--.-|+++.+.- ..++..... ..+...--++.|+++|.+
T Consensus 266 ~vrvie---Pvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvkyf~KmlSs~sEtvIF~fLGvs 342 (670)
T KOG1966 266 HVRVLE---PVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVS 342 (670)
T ss_pred CEEEEC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHEEEHHH
T ss_conf 615405---22644288999999889899999999999998999986235477788999999998753520121011064
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 147988620256777765554221223211000255
Q gi|254780924|r 301 FNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFG 336 (609)
Q Consensus 301 l~~~~l~~~~~~~l~~~~~~~~~k~~~~~~~~~~~~ 336 (609)
.-=..---+|..+...++..++.|.+++...+++..
T Consensus 343 tv~~~h~wd~~Fi~~Tv~fC~i~R~lgv~~lt~~lN 378 (670)
T KOG1966 343 TVSSNHHWDFAFICLTLVFCLIYRAIGVVVLTWFLN 378 (670)
T ss_pred HCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 527763300011446899999999999999999987
No 25
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.45 E-value=3.5e-05 Score=52.51 Aligned_cols=279 Identities=17% Similarity=0.137 Sum_probs=134.9
Q ss_pred HHHHHHHHHC---CHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999627---4103855847899-99999999999988254168899984151588998999999999999999996
Q gi|254780924|r 28 GYLVAGILVG---PRTPGFVASQSLV-PALAEIGIILLMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVM 103 (609)
Q Consensus 28 ~~il~GillG---p~~l~~i~~~~~l-~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (609)
-=++.|.++. |..+++-...+.+ ..=+.-=+.+.+|..|-++|+|...+.-++...+...-++....++..+..++
T Consensus 14 VPLllgalinTf~P~~l~iGgfTtalf~~Ga~~il~~~l~~~Ga~I~lk~~~~~l~kg~~ll~~K~~i~~~lg~~~~~~~ 93 (308)
T PRK12460 14 VPLVIGALINTFAPQALEIGGFTTALFKNGAAPLLGAFLLCMGAGISVKAAPQALLQGGTITLTKLLVAIGIGLGVEHFF 93 (308)
T ss_pred HHHHHHHHHHHCCCCCHHHCCHHHHHHHCCHHHHHHHHHHHHCCEEEEHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999973278620416631787865859899999999177545021308789899999999999999999999982
Q ss_pred CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 78868---999999999742389999876565541144057898998777789999999999861344433013567899
Q gi|254780924|r 104 GWSLG---GSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWT 180 (609)
Q Consensus 104 g~~~~---~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~ 180 (609)
|.+-. .++.+=++++.|.-+.=..+..|.+... |..+..++++..
T Consensus 94 g~~Gi~GlS~LAiiaa~tnsNggLY~aL~~~YGd~~--------------D~gA~~i~sl~~------------------ 141 (308)
T PRK12460 94 GAEGIFGLSGVAIIAAMSNSNGGLFAALVGEFGNER--------------DVGAISILSLND------------------ 141 (308)
T ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHH--------------HHHHHHHHHHCC------------------
T ss_conf 965624617999999984775899999999809986--------------605775456514------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 99887653210147999999984101000010003445438776420356736899999999999999888--7411002
Q gi|254780924|r 181 SFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSS--KLFGVSL 258 (609)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~g~s~ 258 (609)
.-.++. +.++.+ +.+ .+.-+-.
T Consensus 142 ---------------------------------------------------GPf~TM----l~LG~s-GlA~ip~~~lv~ 165 (308)
T PRK12460 142 ---------------------------------------------------GPFFTM----LALGAA-GMANIPIMALVA 165 (308)
T ss_pred ---------------------------------------------------CCHHHH----HHHHCC-CCCCCCHHHHHH
T ss_conf ---------------------------------------------------709999----999606-467898899999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 46666642220276145689999976689999999988653114798862025677776555422122321100025587
Q gi|254780924|r 259 SLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRS 338 (609)
Q Consensus 259 ~lgaf~aG~~l~~~~~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~~~~k~~~~~~~~~~~~~~ 338 (609)
.+--++.|+.+.|.+. +..+.+.+-...++|+|-..+|..+|+..+.+.....+.+-+...+.-....+..-+..|.+
T Consensus 166 ~llPlliG~ilGNLD~--~~r~fl~~~~~~lIpF~~FaLGaginl~~i~~aGl~GIlLgv~~~~~tg~~~~~~dr~~g~~ 243 (308)
T PRK12460 166 VLVPLVLGMILGNLDP--DMRDFLTKGGPLLIPFFAFALGAGINLEMLLQAGLAGILLGVLTTFVGGFFNIRADRLVGGT 243 (308)
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHCCCCCEEEEHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999996636888--99998725787352041564027887999998163048999999999839999999995899
Q ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999864-32122025678898876417878668778778889999999999986789
Q gi|254780924|r 339 VATALTIAA-SLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVLAEF 397 (609)
Q Consensus 339 ~~~~~~~g~-~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~~~~~ 397 (609)
..-.+..+. .-+.....+.+ +..--+....-+.-...+-..+++|.+++|++..+.++
T Consensus 244 g~aG~A~sstAGnAvatPa~v-A~~dPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~k 302 (308)
T PRK12460 244 GIAGAAASSTAGNAVATPLAI-AQADPSLAEVAAAAAPLVAASVITTAILTPVLTSWVAK 302 (308)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 722468977777877538999-87490356668999999999999999999999999999
No 26
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=98.37 E-value=1.8e-05 Score=54.47 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=71.7
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHH--HHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH----
Q ss_conf 799737-74899999999847990899719989--99999976992999789998999848931467999935996----
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEK--KIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA---- 523 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~--~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~---- 523 (609)
|+|.|. |.+|+.+++.|.++|++|.++..|++ ..+.+.+.|.+++.||.+|++.|+++ ++.+|.++.+++..
T Consensus 1 IlV~GatG~iG~~vv~~L~~~g~~Vr~l~R~~~~~~~~~l~~~gve~v~gD~~d~~sl~~a-l~gvd~v~~~~~~~~~~~ 79 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVEA-LKGVDVVFSVTGFWLSKE 79 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHH-HCCCCEEEEECCCCCCHH
T ss_conf 0998968289999999998589938999718736656666417988999068887899999-679988999158874177
Q ss_pred -HHHHHHHHHHHHHCCCCEEE
Q ss_conf -89999999999958988089
Q gi|254780924|r 524 -FEAAYITQEARNSNPSILII 543 (609)
Q Consensus 524 -~~n~~~~~~~~~~~~~~~ii 543 (609)
+....+...+++.+-+ +++
T Consensus 80 ~~~~~~~~~AA~~aGVk-~~V 99 (232)
T pfam05368 80 IEDGKKLADAAKEAGVK-HFI 99 (232)
T ss_pred HHHHHHHHHHHHHCCCC-CEE
T ss_conf 99999999999973998-345
No 27
>pfam03812 KdgT 2-keto-3-deoxygluconate permease.
Probab=98.34 E-value=6.3e-05 Score=50.77 Aligned_cols=249 Identities=13% Similarity=0.158 Sum_probs=126.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998825416889998415158899899999999999999999678868--------999999999742389999876
Q gi|254780924|r 58 IILLMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWSLG--------GSVVFGLALSIASTVVLLKAL 129 (609)
Q Consensus 58 l~~llF~~Gleld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~--------~all~g~~l~~ts~~vv~~~l 129 (609)
+...+|..|-++|+|...+.-|+...+...-+.+...++..+..++|.+-. .++.+=++++.|.-+.=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~~~~l~kg~~ll~~K~~i~~~lg~~~~~~~g~~Gi~~g~f~GlS~LAiiaa~~nsNggLY~aL~ 130 (314)
T pfam03812 51 LAVWFFCMGASIDFRATGTILRKSGTLVVTKIAFAWVVAVIAAQFIPDDGIQSGFFAGLSVLALVAAMDMTNGGLYAALM 130 (314)
T ss_pred HHHHHHHHCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999993675353103366785056888999999999999999819534313340481799999998466589999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 56554114405789899877778999999999986134443301356789999887653210147999999984101000
Q gi|254780924|r 130 QENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIG 209 (609)
Q Consensus 130 ~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (609)
.|.+... |..+..++++.
T Consensus 131 ~qyGd~~--------------D~gA~~i~sl~------------------------------------------------ 148 (314)
T pfam03812 131 NQYGRKE--------------EAGAFVLMSLE------------------------------------------------ 148 (314)
T ss_pred HHHCCHH--------------HHHHHHHHHHC------------------------------------------------
T ss_conf 9809976--------------50477434542------------------------------------------------
Q ss_pred EEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 010003445438776420356736899999999999999888--741100246666642220276145689999976689
Q gi|254780924|r 210 VMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSS--KLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRD 287 (609)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~g~s~~lgaf~aG~~l~~~~~~~~~~~~~~~~~~ 287 (609)
+.-.++. +.++.+ ..+ .+.-+-..+--++.|+.+.|.+. +..+.+.+-..
T Consensus 149 ---------------------~GPf~TM----l~LG~s-GlA~ip~~~lv~~ilPiliG~ilGNlD~--~~r~fl~~~~~ 200 (314)
T pfam03812 149 ---------------------SGPLMTM----VILGVT-GIAAFEPETFVGAVLPFLLGFALGNLDP--DLRDLFSKVVQ 200 (314)
T ss_pred ---------------------CCCHHHH----HHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCH--HHHHHHCCCCC
T ss_conf ---------------------4709999----999606-4678988999999999999998746889--99998715787
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH-HCCCCHHHHHHHHHHHH
Q ss_conf 9999999886531147988620256777765554221223211000255-879999998643-21220256788988764
Q gi|254780924|r 288 AFSVLFFISVGMMFNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFG-RSVATALTIAAS-LSQIGEFSFILANLGVE 365 (609)
Q Consensus 288 ~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~g~~-l~~~g~~~~v~a~~a~~ 365 (609)
.++|+|...+|..+|+..+.+.....+.+-+...+.-....++.-++.+ .+..-.+..+.. -+.....+.+ +..--+
T Consensus 201 ~lIpF~~FaLGaginl~~i~~~Gl~GIlLgv~~~~~tG~~~~~~dr~i~~~~g~aG~A~sttAGnAvatPaav-A~~dP~ 279 (314)
T pfam03812 201 TLIPFFAFALGNTINLGVIIQTGLLGIFLGVSVIIVTGIPLILADKFIGGGDGTAGVAASSSAGAAVATPYLI-AEMNPS 279 (314)
T ss_pred EEEEHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCH
T ss_conf 3631204530278879999970630599999999997389999999964899730357976777877538999-874903
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 17878668778778889999999999986789
Q gi|254780924|r 366 LGILPDQARDLILASSIISIILNPLVFVLAEF 397 (609)
Q Consensus 366 ~g~i~~~~~~~i~~~~~~s~~itp~l~~~~~~ 397 (609)
....-+.-...+-..+++|.+++|++-.+.++
T Consensus 280 ~a~~a~~ATaqvAaavivTaiL~Pilt~~~~K 311 (314)
T pfam03812 280 FAPVAESATALVATSVIVTSLLVPIATVWWDK 311 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56668999999999999999999999999997
No 28
>pfam03601 Cons_hypoth698 Conserved hypothetical protein 698.
Probab=98.33 E-value=0.00029 Score=46.17 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHCCHHCCCCCCH-HHH----HHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999999999999870---88867999999996274103855847-899----99999999999988254168899984
Q gi|254780924|r 5 IWGFVLAFIFGAIANRC---RLPTLIGYLVAGILVGPRTPGFVASQ-SLV----PALAEIGIILLMFGVGLHFSVKDLIS 76 (609)
Q Consensus 5 ~~~l~~a~i~g~la~rl---~lP~i~~~il~GillGp~~l~~i~~~-~~l----~~l~~lgl~~llF~~Gleld~~~l~~ 76 (609)
.+.+.++.+.-.+++-. .+++.+.-++.|+++|+...+.-+.. +.+ +.+-++|+++ -|.+++++++.+
T Consensus 4 ~l~~~ia~~a~~l~~~~~~~~lg~~~~AillGi~l~n~~~~~~~~~~~Gi~f~~k~~Lr~gIvL----lG~~l~~~~i~~ 79 (305)
T pfam03601 4 LLSLLIAVLAYLLGKSPIFPHLGALTLAIVLGMLLGNLFLGLQEQLKAGVLFSSKKLLRLGIVL----YGFRLTLSDIAA 79 (305)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHH----HCCCCCHHHHHH
T ss_conf 8999999999999718575740399999999999963045880754238988899899999999----673517999998
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHH
Q ss_conf 151588998999999999999999-996788689999999997423
Q gi|254780924|r 77 VRGIALPGALIQIILGTALGALMG-MVMGWSLGGSVVFGLALSIAS 121 (609)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~lg~~~~~all~g~~l~~ts 121 (609)
.+...+......+..++..+.... ..++++...+.++|+-.+..+
T Consensus 80 ~G~~~~~~~~~~v~~t~~~~~~lg~r~~~l~~~~~~Lia~GtsICG 125 (305)
T pfam03601 80 VGLKGVLIDAIVLISTFLLVLFLGQRLLGLDKNLALLLAAGSSICG 125 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHH
T ss_conf 7378999999999999999999999984997878999985641247
No 29
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.33 E-value=2e-05 Score=54.29 Aligned_cols=118 Identities=15% Similarity=0.290 Sum_probs=84.8
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECC---CH---
Q ss_conf 7997-3774899999999847990899719989999999769929997899989998489314679999359---96---
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIS---TA--- 523 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~---~~--- 523 (609)
|+|. |-|.+|+.+++.|.++|++|.++-.|+++.+.+.+.|.+++.||.+|++.|.++ ++.++.++.+.. +|
T Consensus 3 ILV~GATG~lGr~vVr~Ll~~G~~Vr~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~A-l~GvdaVi~~~~~~~~~~~~ 81 (319)
T CHL00194 3 LLVIGATGTLGRQIVRRALDEGYQVKCLVRNLRKAAFLKEWGAELVYGDLSLPETIPPA-LEGITAIIDASTSRPSDLNN 81 (319)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHH-HCCCCEEEEECCCCCCCCCH
T ss_conf 99989985899999999996889089995786763234215967999427887789999-65996799945667788620
Q ss_pred ------HHHHHHHHHHHHHCCCCEEEEEE----CC----------HHHHHHHHHCCCCEEE-CHHHHH
Q ss_conf ------89999999999958988089994----69----------8999999976998787-658999
Q gi|254780924|r 524 ------FEAAYITQEARNSNPSILIIALA----DS----------DSEVEHLTRYGADTVV-MSAREI 570 (609)
Q Consensus 524 ------~~n~~~~~~~~~~~~~~~iia~~----~~----------~~~~~~l~~~Ga~~vi-~p~~~~ 570 (609)
+.+..+...+++.+-+ +++--. +. ..-.+.+++.|.+++| .|..-.
T Consensus 82 ~~~vd~~g~~~li~AAk~aGVk-r~V~lS~lga~~~~~~p~~~~K~~~E~~L~~Sgl~~TIlRPs~F~ 148 (319)
T CHL00194 82 AYQIDLEGKLALIEAAKAAKVK-RFIFFSILNAEQYPQVPLMKIKSDIEEKLKQSGINYTIFRLAGFF 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 8898898899999999984998-899961356666887567787999999998679985998473999
No 30
>pfam06965 Na_H_antiport_1 Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyse the exchange of H+ for Na+ in a manner that is highly dependent on the pH.
Probab=98.31 E-value=0.00013 Score=48.61 Aligned_cols=268 Identities=17% Similarity=0.101 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHH----HHHCCHHH--HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHH
Q ss_conf 99999999999999882541688999----84151588--99899999999999999999678868999999-9997423
Q gi|254780924|r 49 LVPALAEIGIILLMFGVGLHFSVKDL----ISVRGIAL--PGALIQIILGTALGALMGMVMGWSLGGSVVFG-LALSIAS 121 (609)
Q Consensus 49 ~l~~l~~lgl~~llF~~Gleld~~~l----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lg~~~~~all~g-~~l~~ts 121 (609)
..+...+-=+.+..|.+|+|+.-+-+ ++.++..+ ..++.+++.+..+-..+.+ + -+.+ .-| .+-+.|+
T Consensus 50 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AA~GGm~vPAliY~~~n~--~--~~~~-~~GW~IP~ATD 124 (374)
T pfam06965 50 LHHWINDGLMALFFLLVGLEIKRELLEGELRSPRQAALPGIAALGGMIVPALIYLLLNY--G--DPET-VSGWAIPMATD 124 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHEECC--C--CCCC-CCCCCCCCHHH
T ss_conf 99998756999999999999997641786798788888899998144098998810225--8--9510-14635444547
Q ss_pred HHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999987656554-114405789899877778999999999986134443301356789999887653210147999999
Q gi|254780924|r 122 TVVLLKALQENRI-LETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMIT 200 (609)
Q Consensus 122 ~~vv~~~l~~~~~-~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (609)
++...-++.-.+. .........+.-+++||+.++.+.++.- +.... . ..+...
T Consensus 125 IAFAlgvlallG~rvP~~lr~FLlaLAIvDDlgaI~VIA~FY---t~~i~---~--------------------~~L~~a 178 (374)
T pfam06965 125 IAFALGVLALLGSRVPASLKIFLLALAIVDDLGAILIIALFY---SEELS---L--------------------AALLGA 178 (374)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEE---CCCCC---H--------------------HHHHHH
T ss_conf 999999999965768879999999999986211225788861---89754---9--------------------999999
Q ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------
Q ss_conf 9841010000100034454387764203567368999999999999998887411002466666422202761-------
Q gi|254780924|r 201 LLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAESE------- 273 (609)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~~------- 273 (609)
.. ...... ..++. +.++.-.+....+.. |......|.++.++..+.|+.++..+
T Consensus 179 ~~----~~~~l~---------~l~~~-~v~~~~~y~~~g~~~-----W~~~~~SGvHaTiAGV~la~~iP~~~~~~~~~~ 239 (374)
T pfam06965 179 AL----GIAVLA---------LLNRL-GVRSLLPYLVLGVIL-----WFAVLKSGVHATLAGVILGLLIPLKKRKGEPAA 239 (374)
T ss_pred HH----HHHHHH---------HHHHC-CCCCHHHHHHHHHHH-----HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99----999999---------99974-985214999999999-----999975144188898888840456654457655
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHCC----------CCCC
Q ss_conf --45689999976689999999988653114798--862-02567777655542212232110002----------5587
Q gi|254780924|r 274 --LSQSAAQESLPLRDAFSVLFFISVGMMFNPDI--LIS-NPILLMMAVIIVIIGKALIAFIVVIA----------FGRS 338 (609)
Q Consensus 274 --~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~--l~~-~~~~~l~~~~~~~~~k~~~~~~~~~~----------~~~~ 338 (609)
.-++.++.+.|...+++...|...-+.++++. +.. .-.....+.+..+++|+++++..++. .+.+
T Consensus 240 ~spl~rleh~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~~~~pv~lGI~lGL~vGK~lGI~~~s~lavkl~~~~lP~g~~ 319 (374)
T pfam06965 240 HSPLERLEHALHPWVAFAILPLFAFANAGVSLAGMTLDDLTSPLTLGIALGLVVGKPIGIFGFSWLAVKLGLAKLPEGIS 319 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 89899999975423798999999985068654677535311769999999998064388999999999946577999998
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9999998643212202567889887641
Q gi|254780924|r 339 VATALTIAASLSQIGEFSFILANLGVEL 366 (609)
Q Consensus 339 ~~~~~~~g~~l~~~g~~~~v~a~~a~~~ 366 (609)
|++-.-.|..---+=..|+-++..|...
T Consensus 320 w~~i~gv~~LaGIGFTmSLfIa~LAF~~ 347 (374)
T pfam06965 320 WGQIFGVAILCGIGFTMSLFIGSLAFPG 347 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999999986699
No 31
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.30 E-value=0.00012 Score=48.97 Aligned_cols=295 Identities=13% Similarity=0.101 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHH----HHCCHHH--HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHH
Q ss_conf 99999999999998825416889998----4151588--99899999999999999999678868999999-99974238
Q gi|254780924|r 50 VPALAEIGIILLMFGVGLHFSVKDLI----SVRGIAL--PGALIQIILGTALGALMGMVMGWSLGGSVVFG-LALSIAST 122 (609)
Q Consensus 50 l~~l~~lgl~~llF~~Gleld~~~l~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~lg~~~~~all~g-~~l~~ts~ 122 (609)
.+...+--+.+..|.+|+|+.-+-+. +.++..+ ..++.+++.+..+-..+. ..-+.+. =| .+-+.|++
T Consensus 52 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lPi~AA~GGm~~PAlIY~~~n----~~~~~~~-~GW~IP~ATDI 126 (382)
T PRK09560 52 SHWINDGLMAVFFLLIGLEVKRELLEGALKSKETAIFPAIAAVGGMLAPALIYVAFN----FNDPEAI-SGWAIPAATDI 126 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHEEE----CCCCCCC-CCCCCCCHHHH
T ss_conf 999977899999999999999998548679878888889999804409888881131----5883102-65132460179
Q ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999876565541-144057898998777789999999999861344433013567899998876532101479999999
Q gi|254780924|r 123 VVLLKALQENRIL-ETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITL 201 (609)
Q Consensus 123 ~vv~~~l~~~~~~-~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (609)
+...-++.-.+.. ........+..+++||+.++.+.++.- +.+.. .. .+....
T Consensus 127 AFalgvlallg~rvP~~lr~FLlaLAIvDDlgaI~VIA~FY---t~~i~-~~----------------------~L~~a~ 180 (382)
T PRK09560 127 AFALGIMALLGKRVPVSLKVFLLALAIIDDLGVVVIIALFY---SSDLS-TL----------------------ALTVGF 180 (382)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEC---CCCCC-HH----------------------HHHHHH
T ss_conf 99999999965768879999999999986200215888750---89877-99----------------------999999
Q ss_pred HHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CHH
Q ss_conf 84101000010003445438776420356736899999999999999888741100246666642220276------145
Q gi|254780924|r 202 LKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAES------ELS 275 (609)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~~------~~~ 275 (609)
.. ..... ..++. +.++...+....+.. |......|.++.++..+.|+.++.. ...
T Consensus 181 ~~----~~~l~---------~l~~~-~v~~~~~y~~~G~~l-----W~~~~~SGiHaTiAGV~la~~iP~~~~~~~~spl 241 (382)
T PRK09560 181 AM----TGVLF---------MLNAK-HVTKLSWYLIVGFIL-----WVAVLKSGVHATLAGVVIGFAIPLKGKKGEHSPL 241 (382)
T ss_pred HH----HHHHH---------HHHHC-CCCCHHHHHHHHHHH-----HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 99----99999---------99853-886217999999999-----9999970542999999999506777777888989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCC----------CCCCHHHH
Q ss_conf 68999997668999999998865311479--8862-02567777655542212232110002----------55879999
Q gi|254780924|r 276 QSAAQESLPLRDAFSVLFFISVGMMFNPD--ILIS-NPILLMMAVIIVIIGKALIAFIVVIA----------FGRSVATA 342 (609)
Q Consensus 276 ~~~~~~~~~~~~~~~~~fFv~iG~~l~~~--~l~~-~~~~~l~~~~~~~~~k~~~~~~~~~~----------~~~~~~~~ 342 (609)
++.++.+.|...+++...|...-+.++++ .+.. .-.....+.+..+++|+++++..++. .+.+|++-
T Consensus 242 ~rleh~l~p~v~~~IlPlFAfaNAGV~l~~~~~~~l~~~v~~gI~~GL~vGK~lGI~~~s~la~kl~~~~lP~g~~w~~l 321 (382)
T PRK09560 242 KHMEHALHPYVAFAILPVFAFANAGISLEGVSLSGLTSMLPLGIALGLFLGKPLGIFSFSWAAVKLGVAKLPEGVNFKHI 321 (382)
T ss_pred HHHHHHHCCCCCEEHHHHHHHHCCCEEECCCCHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 99999835231032477788741561005776787636689999999983333769999999999386779999988999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986432122025678898876417--878668778778889999999999986
Q gi|254780924|r 343 LTIAASLSQIGEFSFILANLGVELG--ILPDQARDLILASSIISIILNPLVFVL 394 (609)
Q Consensus 343 ~~~g~~l~~~g~~~~v~a~~a~~~g--~i~~~~~~~i~~~~~~s~~itp~l~~~ 394 (609)
.-.|..---+=..|+-++..|.+.. ....+.--.++...+++.+++-...+.
T Consensus 322 ~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigiL~~S~~sai~G~~~L~~ 375 (382)
T PRK09560 322 FAVSVLCGIGFTMSIFISSLAFGGANPEFDTYARLGILMGSTTAAVLGYFLLHI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999888899999999851689986776106889999999999999999998
No 32
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.26 E-value=0.00039 Score=45.35 Aligned_cols=15 Identities=13% Similarity=0.188 Sum_probs=5.8
Q ss_pred HHHHHHCCCCEEEEC
Q ss_conf 999984799089971
Q gi|254780924|r 464 VQNLKAAGIALLVIE 478 (609)
Q Consensus 464 ~~~L~~~~~~v~vid 478 (609)
.+.++++|+++.-=|
T Consensus 436 V~~~r~~G~~v~yGD 450 (602)
T PRK03659 436 VNLMRKYGYKVYYGD 450 (602)
T ss_pred HHHHHHCCCEEEEEC
T ss_conf 999997899089758
No 33
>COG2855 Predicted membrane protein [Function unknown]
Probab=98.25 E-value=0.00042 Score=45.08 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=83.0
Q ss_pred HHHHHHHH--HHHCCCCHHHHHHHHHHHHCCHHCCCCCCHH----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHH
Q ss_conf 99999999--9870888679999999962741038558478----99999999999999882541688999841515889
Q gi|254780924|r 10 LAFIFGAI--ANRCRLPTLIGYLVAGILVGPRTPGFVASQS----LVPALAEIGIILLMFGVGLHFSVKDLISVRGIALP 83 (609)
Q Consensus 10 ~a~i~g~l--a~rl~lP~i~~~il~GillGp~~l~~i~~~~----~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~ 83 (609)
.++.++.. ....++|+.+.-|+.|+++|.....-.+-.. .-+.+-++|++++ |.+++++++.+.+...+.
T Consensus 22 ~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLl----G~~ltl~~i~~~G~~~v~ 97 (334)
T COG2855 22 LAMLLGAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLL----GFRLTLSDIADVGGSGVL 97 (334)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHH----CCEEEHHHHHHCCCCHHH
T ss_conf 9999853477752585178999999999850023403525620013887999999998----360139999872711799
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_conf 98999999999999999996788689999999997423899---998765
Q gi|254780924|r 84 GALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIASTVV---LLKALQ 130 (609)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~lg~~~~~all~g~~l~~ts~~v---v~~~l~ 130 (609)
.....+..++..++.+..++|+|+..+.++|+.-+..+-+- +.|+.+
T Consensus 98 ~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvik 147 (334)
T COG2855 98 IIAITLSSTFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIK 147 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999995998878999980211547999998387678
No 34
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.19 E-value=8.7e-05 Score=49.83 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=84.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHCC---CCEEECCCCCHHHHHHCCHHHCCEEEEECCCHH
Q ss_conf 81799737748999999998479-90899719989999999769---929997899989998489314679999359968
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAG-IALLVIEDSEKKIEELRSLG---IDVIYGNATITKILLMANIEKARSLVVSISTAF 524 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~-~~v~vid~~~~~~~~~~~~g---~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~ 524 (609)
..++|+|.|++|+.+|+.|.+++ .+|.+.|.+++.++++.+.+ .++..-|+.|.+.+.++ +++.|.+|.+.+-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~l-i~~~d~VIn~~p~~- 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVAL-IKDFDLVINAAPPF- 79 (389)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH-HHCCCEEEEECCCH-
T ss_conf 7289989866679999999857896299984888899998753346631699425675889998-72577899928705-
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCH----HHHHHHHHCCCCEEECH
Q ss_conf 9999999999958988089994698----99999997699878765
Q gi|254780924|r 525 EAAYITQEARNSNPSILIIALADSD----SEVEHLTRYGADTVVMS 566 (609)
Q Consensus 525 ~n~~~~~~~~~~~~~~~iia~~~~~----~~~~~l~~~Ga~~vi~p 566 (609)
.+..+.+.+-+.+- +.+-.+.++ +..+..+++|+..+..-
T Consensus 80 ~~~~i~ka~i~~gv--~yvDts~~~~~~~~~~~~a~~Agit~v~~~ 123 (389)
T COG1748 80 VDLTILKACIKTGV--DYVDTSYYEEPPWKLDEEAKKAGITAVLGC 123 (389)
T ss_pred HHHHHHHHHHHHCC--CEEECCCCCCHHHHHHHHHHHCCCEEECCC
T ss_conf 42999999998599--889754677506565489887490797166
No 35
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=98.18 E-value=0.0005 Score=44.56 Aligned_cols=34 Identities=21% Similarity=-0.113 Sum_probs=14.7
Q ss_pred ECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 978999899984893146799993599689999999999
Q gi|254780924|r 496 YGNATITKILLMANIEKARSLVVSISTAFEAAYITQEAR 534 (609)
Q Consensus 496 ~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~ 534 (609)
.-|-.+.+-|+++|+++ ++ -+.-|.++.....+-
T Consensus 497 ard~~~~~~L~~~Ga~~---vv--~Et~essL~l~~~~L 530 (615)
T PRK03562 497 ARDVDHYIRLRQAGVEK---PE--RETFEGALKSGRLAL 530 (615)
T ss_pred ECCHHHHHHHHHCCCCE---EE--CCHHHHHHHHHHHHH
T ss_conf 39778899999789998---96--665899999999999
No 36
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=98.16 E-value=7.9e-05 Score=50.12 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=79.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHC----CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHH
Q ss_conf 7997377489999999984799--089971998999999976----9929997899989998489314679999359968
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSL----GIDVIYGNATITKILLMANIEKARSLVVSISTAF 524 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~----g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~ 524 (609)
|+|+|+|.+|+.+++.|.+++. ++++.|.+.++++++.+. ......-|+.|.+-|++. +.+.|.||.+.+..
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~~~i~vad~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~diVv~~~p~~- 78 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDVDEITVADRSLEKAQALAAPKLGLRFIAIAVDADNYEALAAL-LKEGDLVINLAPPF- 78 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-HHCCCEEEECCCHH-
T ss_conf 9898977879999999972899886999989889989877523698538999577899999998-71289999998434-
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHH----HHHHHHHCCCCEE
Q ss_conf 99999999999589880899946989----9999997699878
Q gi|254780924|r 525 EAAYITQEARNSNPSILIIALADSDS----EVEHLTRYGADTV 563 (609)
Q Consensus 525 ~n~~~~~~~~~~~~~~~iia~~~~~~----~~~~l~~~Ga~~v 563 (609)
.|..+...+-+.+-+ .+-.+...+ ..+..++.|+..+
T Consensus 79 ~~~~i~~~c~~~g~~--yvd~s~~~~~~~~l~~~a~~ag~~~~ 119 (384)
T pfam03435 79 LSLTVLKACIETGVH--YVDTSYLREAQLALHEKAKEAGVTAV 119 (384)
T ss_pred HCHHHHHHHHHCCCC--EEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 169999999973997--57534366889999997765696899
No 37
>PRK03818 hypothetical protein; Validated
Probab=98.15 E-value=8.9e-05 Score=49.74 Aligned_cols=134 Identities=20% Similarity=0.290 Sum_probs=83.5
Q ss_pred HHHHHHH-HHHCCCCHHHHHHHHHHHHCCHH--CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC---HHHHH
Q ss_conf 9999999-98708886799999999627410--385584789999999999999988254168899984151---58899
Q gi|254780924|r 11 AFIFGAI-ANRCRLPTLIGYLVAGILVGPRT--PGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLISVRG---IALPG 84 (609)
Q Consensus 11 a~i~g~l-a~rl~lP~i~~~il~GillGp~~--l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~---~~~~~ 84 (609)
++..|.+ .+.+++ .+.+-+++|+++|-.. +|.--+++.++.+.++|+++.+|..|++.-++-++..+| +...+
T Consensus 18 G~~lGkiki~~~sL-GvagvLfvgL~~G~~~~~~g~~~~~~~l~~v~~~Gl~LFvyaVGl~~GP~FF~sl~~~Gl~~~ll 96 (552)
T PRK03818 18 GLWIGNIKIRGVGL-GIGGVLFGGIIVGHFVSQFGLTLDPDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLF 96 (552)
T ss_pred HHHHCCEEECCCCC-CHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHH
T ss_conf 78450438866611-47999999999974012217776833789999988999988765511779999998603999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 899999999999999999678868999--9999997423899998765655411440578989
Q gi|254780924|r 85 ALIQIILGTALGALMGMVMGWSLGGSV--VFGLALSIASTVVLLKALQENRILETDRGKIAVG 145 (609)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~lg~~~~~al--l~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~ 145 (609)
+..-++...++....+++++++...+. +-|+..+..+.+.....+.+.+...+...+..++
T Consensus 97 a~~~~~~~~~~~~~~~~~~gl~~~~aaGl~aGalT~Tp~LgaA~~ai~~l~~~~~~~~~~avg 159 (552)
T PRK03818 97 AVLIVILGGLVTAILHKLFGIPLPVMLGIFSGAVTNTPALGAAQQILRDLGTPMALVDQMGMG 159 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 999999999999999999599888899998615523487899999997348874334665356
No 38
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.08 E-value=0.00014 Score=48.39 Aligned_cols=129 Identities=19% Similarity=0.295 Sum_probs=89.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 78179973774899999999847990899719989999999769929997899989998489314679999359968999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
..+++|.|+||.|+.+++.|...|-+|.|.+.++++..++.+.|++.+.- +-|.+ .+.++|.++-+.+.. +
T Consensus 152 gs~~lVlG~Gr~G~~lA~~l~~lGA~V~V~aR~~~~~a~a~~~G~~~v~~-----~~L~~-~~~~~D~i~NTIPa~---V 222 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGAKVKVGARKSAHLARITEMGYSPVHL-----SELAE-EVGEADIIFNTIPAL---V 222 (296)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEH-----HHHHH-HHCCCCEEEECCCHH---H
T ss_conf 76589989868999999999977996999979999999999769858719-----99997-735699999898525---4
Q ss_pred HHHHHHHHHCCCCEEEEEECCH--HHHHHHHHCCCCEEECHHH-------HHHHHHHHHHHHHHHHH
Q ss_conf 9999999958988089994698--9999999769987876589-------99999999987421002
Q gi|254780924|r 528 YITQEARNSNPSILIIALADSD--SEVEHLTRYGADTVVMSAR-------EIALGMLDRLNQVHHEK 585 (609)
Q Consensus 528 ~~~~~~~~~~~~~~iia~~~~~--~~~~~l~~~Ga~~vi~p~~-------~~a~~~~~~l~~~~~~~ 585 (609)
......++..++.-||=-+..+ .+-+..++.|+..+.-|-. -+|+-+++.+.+...+.
T Consensus 223 lt~~~l~~~~~~avIIDLAS~PGG~Df~~A~~~Gika~lapgLPGk~APkTag~Ila~~i~~ll~e~ 289 (296)
T PRK08306 223 LTKNVLSKMPPHALIIDLASKPGGTDFEYAKKLGIKALLAPGLPGKVAPKTAGQILANVLSNLLAED 289 (296)
T ss_pred CCHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 3999994189996999947799973889999839859972899973171539999999999999999
No 39
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=98.05 E-value=0.0001 Score=49.26 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=70.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCC--HHHHHHHHH-CCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHH
Q ss_conf 781799737748999999998479908997199--899999997-69929997899989998489314679999359968
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS--EKKIEELRS-LGIDVIYGNATITKILLMANIEKARSLVVSISTAF 524 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~--~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~ 524 (609)
+-+++|+|+|+++.+=++.|.+.|..|.+|..+ ++. +++.+ ..++.+..+... + .++++..|+++|+|.+
T Consensus 24 klkvLVVGGG~VA~RKi~~Ll~agA~VtVVSP~~~~el-~~L~~~~~I~~i~r~y~~-~-----dL~~~~LVIaATdd~~ 96 (222)
T PRK05562 24 KIKVLVIGGGKAAFIKGKTFLKKGCYVEILSKEFSKEF-LDLKKYGNLKLIKGNYDK-E-----FIKDKHLIIIATDDEE 96 (222)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHH-HHHHHCCCEEEEECCCCH-H-----HCCCCCEEEEECCCHH
T ss_conf 76699999879999999999878998999878668899-999975986999686797-7-----8088739999479889
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 9999999999958988089994698999
Q gi|254780924|r 525 EAAYITQEARNSNPSILIIALADSDSEV 552 (609)
Q Consensus 525 ~n~~~~~~~~~~~~~~~iia~~~~~~~~ 552 (609)
.|..+...+++.+ ..+..++|++..
T Consensus 97 lN~~I~~~a~~~~---ilvNvvddp~~~ 121 (222)
T PRK05562 97 LNNKIRKHCDRLY---KLYIDCSDFKKG 121 (222)
T ss_pred HHHHHHHHHHHHC---CEEEECCCCCCC
T ss_conf 9999999999809---988985788768
No 40
>pfam05684 DUF819 Protein of unknown function (DUF819). This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.03 E-value=0.0012 Score=42.04 Aligned_cols=313 Identities=13% Similarity=0.103 Sum_probs=145.2
Q ss_pred CCCHHHHHHHHHHHHCCHHCCCCCC--H-HH----HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 8886799999999627410385584--7-89----999999999999988254168899984151588998999999999
Q gi|254780924|r 22 RLPTLIGYLVAGILVGPRTPGFVAS--Q-SL----VPALAEIGIILLMFGVGLHFSVKDLISVRGIALPGALIQIILGTA 94 (609)
Q Consensus 22 ~lP~i~~~il~GillGp~~l~~i~~--~-~~----l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~~~~~~~~~~~~ 94 (609)
.+|.++.-++.++++. -+|+++. + +. .+++..+++.+++ ++.|++++++.+++.+..=..+.+.+ .
T Consensus 24 ~vp~~ll~~~~~~lls--n~gii~~p~~s~~Y~~v~~yl~P~aI~llL----l~~Dlr~i~~~g~~~l~~F~~~s~gt-v 96 (379)
T pfam05684 24 VVPAALLIYLLAMFFN--TVGLIDSESESPAYDVVRNFLLPAAIPLLL----LRIDLRKIIKLGGKLLAIFLIASVST-V 96 (379)
T ss_pred HCCHHHHHHHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHHHHH----HHCCHHHHHHHCHHHHHHHHHHHHHH-H
T ss_conf 3859999999999998--489868966361899999979999999999----97779999873689999999999999-9
Q ss_pred HHHHHHH-HHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999-967886-89999999997423899998765655411440578989987777899999999998613444330
Q gi|254780924|r 95 LGALMGM-VMGWSL-GGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEP 172 (609)
Q Consensus 95 ~~~~~~~-~lg~~~-~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~ 172 (609)
+|+.+++ .++... ++..-....++.|=++=......-....+.+ +...-.....|.+..-+.+.++..+......
T Consensus 97 iG~~va~~l~~~~lg~~~wk~a~~l~gs~iGGs~N~~Av~~~l~~~-~~~~aa~~aaDnv~~~iw~~~l~~l~~~~~~-- 173 (379)
T pfam05684 97 LGFILAFFLMKSFLGPDTWKIAAALAGSWIGGSANMVAMQAALAVP-ASVFSAALAADNVIYAVWFAVLFALVSLKRF-- 173 (379)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH--
T ss_conf 9999999998864053589999999970137476799999997999-9999999999999999999999998633476--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-------------HHHHCCCCCHHHHHHHH
Q ss_conf 13567899998876532101479999999841010000100034454387-------------76420356736899999
Q gi|254780924|r 173 SSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWI-------------LHMIFYTGSRELFRLGV 239 (609)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 239 (609)
..++..+.- .....+....-.-....
T Consensus 174 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (379)
T pfam05684 174 -----------------------------------------QDHKTKADTSKLKADGNDAAKAVAYEKRNPSSLVDIIFL 212 (379)
T ss_pred -----------------------------------------HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf -----------------------------------------661147871223221122113355413678759999999
Q ss_pred HHHHHHHHHH---HHHHH-----H----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 9999999998---88741-----1----0024666664222027614568999997668999999998865311479886
Q gi|254780924|r 240 LAIALGFAYG---SSKLF-----G----VSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMMFNPDILI 307 (609)
Q Consensus 240 l~~~~~~~~~---~~~~~-----g----~s~~lgaf~aG~~l~~~~~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~ 307 (609)
+...+..... .+... + .-..+.+...|+..+-.+.++.. +--+.+..+++.+||..+|+..|+..+.
T Consensus 213 l~~a~~~~~~s~~la~~l~~~~~~~~~~~~~il~~ttl~l~~a~~~~~~~~-~G~~~lG~~lly~f~a~IGa~~di~~i~ 291 (379)
T pfam05684 213 IGVSFAIVAVAMKLGGYLKNLLTGILGGTWTVVTATIVGLLLAFTRFFELL-PGSEEIGTVLLYVFFAVIGSTADLWSIL 291 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHC-CCCHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 999999999999999987764022222299999999999999650577654-5517889999999999983435799884
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 20256777765554221223211000255879999998643212202567889887641787866877877888999999
Q gi|254780924|r 308 SNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIIL 387 (609)
Q Consensus 308 ~~~~~~l~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~i 387 (609)
+.+. .+......+.+-....+..++..|.+..+-...+.. +-+|.-+--..+.+.. ++....-+.+.++--.+
T Consensus 292 ~ap~-~~l~~~i~l~iH~~~~l~~~kl~k~~l~~~~iAS~A-nIGGpaTA~alA~A~~-----~~Lv~pgvL~gvlGyai 364 (379)
T pfam05684 292 TAPS-IFLFGLIILAVHLAVLLGLGKLFRVDLFLLLLASNA-NIGGPTSAPVMATAKG-----RSLAPPGVLMGTLGYAI 364 (379)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HCCCHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHH
T ss_conf 5629-999999999999999999999978889999999872-0488868999998339-----75324899999999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780924|r 388 NPLVFV 393 (609)
Q Consensus 388 tp~l~~ 393 (609)
+.++-.
T Consensus 365 GTy~G~ 370 (379)
T pfam05684 365 GTFFGI 370 (379)
T ss_pred HHHHHH
T ss_conf 999999
No 41
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=98.01 E-value=5.7e-05 Score=51.10 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=73.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHH
Q ss_conf 17997377489999999984799089971998999999976992999789998999848931467999935996899999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYI 529 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~ 529 (609)
+|=++|.|++|+.+++.|.+.|+++.+-|.++++.+++.++|.... .+++ ++ ++++|.++.+.+|++.-..+
T Consensus 3 ~Ig~IGlG~MG~~ma~~L~~~g~~v~v~d~~~~~~~~~~~~g~~~~----~s~~---e~-~~~~dvIi~~l~~~~~v~~V 74 (163)
T pfam03446 3 KIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVAA----ASPA---EA-AASADVVITMVPAGAAVDAV 74 (163)
T ss_pred EEEEEEEHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEC----CCHH---HH-HHCCCEEEEECCCHHHHHEE
T ss_conf 8999836798999999999779969999797887799998399553----9999---99-86199999925871454022
Q ss_pred HHH----HHHHCCCCEEEEEEC--CHH----HHHHHHHCCCCEEE
Q ss_conf 999----999589880899946--989----99999976998787
Q gi|254780924|r 530 TQE----ARNSNPSILIIALAD--SDS----EVEHLTRYGADTVV 564 (609)
Q Consensus 530 ~~~----~~~~~~~~~iia~~~--~~~----~~~~l~~~Ga~~vi 564 (609)
... .....+. ++++-.. +++ -.+.+++.|++++=
T Consensus 75 ~~~~~gl~~~~~~g-~iiid~sT~~p~~~~~~~~~~~~~g~~~lD 118 (163)
T pfam03446 75 IFGEDGLLPGLKPG-DIIIDGSTISPDDTRRLAKELKEKGIRFLD 118 (163)
T ss_pred ECCCCCHHHHCCCC-CEEEECCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 02631332313589-889867989999999999987530344347
No 42
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.96 E-value=0.00049 Score=44.65 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=73.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHH
Q ss_conf 17997377489999999984799089971998999999976992999789998999848931467999935996899999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYI 529 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~ 529 (609)
+|=++|.|.+|..+|+.|.++|+++.+-|.|++.++.+.++|... +.+++-+- ..+++.|.++.+.++.+..-..
T Consensus 2 kIGfIGLG~MG~~mA~nL~~~G~~V~v~dr~~~~~~~~~~~ga~~----~~s~~e~~-~~~d~prvI~l~lp~~~~Vd~V 76 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAAEGATG----AASLEELV-AKLPAPRVVWLMVPAGEITDST 76 (301)
T ss_pred EEEEECHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEE----CCCHHHHH-HHCCCCCEEEEECCCCHHHHHH
T ss_conf 799983458799999999968990799769999999999859943----29999999-7078887799981797038999
Q ss_pred HHHHHHHCCCCEEEEEEC------CHHHHHHHHHCCCCEEECH
Q ss_conf 999999589880899946------9899999997699878765
Q gi|254780924|r 530 TQEARNSNPSILIIALAD------SDSEVEHLTRYGADTVVMS 566 (609)
Q Consensus 530 ~~~~~~~~~~~~iia~~~------~~~~~~~l~~~Ga~~vi~p 566 (609)
.......-....++.-.. +.+..+.+++.|++.+=-|
T Consensus 77 i~~l~~~l~~g~iiID~sts~~~~t~~~a~~l~~~gi~flDap 119 (301)
T PRK09599 77 IDELAPLLEAGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCC
T ss_conf 9999962789988870899983889999999998599454476
No 43
>pfam03616 Glt_symporter Sodium/glutamate symporter.
Probab=97.93 E-value=0.0017 Score=40.88 Aligned_cols=277 Identities=16% Similarity=0.106 Sum_probs=134.8
Q ss_pred HHHHCCCCHHH--HHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHH--
Q ss_conf 99870888679--99999996274103855847899999999999999882541688999841515889989999999--
Q gi|254780924|r 17 IANRCRLPTLI--GYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLISVRGIALPGALIQIILG-- 92 (609)
Q Consensus 17 la~rl~lP~i~--~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~~~~~~~~~~~~~~-- 92 (609)
+.+|+.+|..+ |.+.+=+...++..+..+.+-... +-+.-+....=..|+.-+++.+|+-+|+............
T Consensus 28 ~L~~~~IP~pViGGll~ail~~~~~~~~~~~~~fd~~-l~~~lm~~FFttiGl~a~~~~lk~gG~~l~~~l~~~~~~~~~ 106 (368)
T pfam03616 28 FLKKFNIPEPVVGGLIVAILLLLLRKFGGTDINFDAS-LQDPLMLAFFTTIGLSANLKLLIKGGKPLLLFLAAAAILIVI 106 (368)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987089656799999999999884237668880600-677999999998454588088987559999999999999999
Q ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHH-HHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -9999999999678868999999999742--3899-99876565-54114405789899877778999999999986134
Q gi|254780924|r 93 -TALGALMGMVMGWSLGGSVVFGLALSIA--STVV-LLKALQEN-RILETDRGKIAVGWLIVEDLIIVLALVLIPAAATN 167 (609)
Q Consensus 93 -~~~~~~~~~~lg~~~~~all~g~~l~~t--s~~v-v~~~l~~~-~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~ 167 (609)
-.++...+..+|.++...++.|.+--.- +|+. .-|.+.|. +... -..++.+.
T Consensus 107 Qn~vGv~la~~~gl~P~~Gl~~Gsisl~GGHGTAaA~g~~f~e~~G~~~----A~~lg~a~------------------- 163 (368)
T pfam03616 107 QNAVGVSMASLLGLDPLLGLLAGSITLSGGHGTAAAWGPTFADLYGIQN----ALEIAMAC------------------- 163 (368)
T ss_pred HHHHHHHHHHHHCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCHHH----HHHHHHHH-------------------
T ss_conf 9999999999938981565642663102777389988999998618433----89999999-------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-------------HHH--HCCCCCH
Q ss_conf 4433013567899998876532101479999999841010000100034454387-------------764--2035673
Q gi|254780924|r 168 YSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWI-------------LHM--IFYTGSR 232 (609)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~--~~~~~~~ 232 (609)
.+ ++......+..-..-++..|+-.++. .+. ..+..+.
T Consensus 164 ---------------AT------------~GLV~g~liGGPia~~LI~k~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 216 (368)
T pfam03616 164 ---------------AT------------FGLVFGGIIGGPVARYLIKRNSLKPQPECDTRDDALQEAFERPQEKRKITA 216 (368)
T ss_pred ---------------HH------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf ---------------99------------999999984089999999946999998765322233211137653466489
Q ss_pred H--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCCHH---HH-HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6--89999999999999988874-----1100246666642220276145---68-999997668999999998865311
Q gi|254780924|r 233 E--LFRLGVLAIALGFAYGSSKL-----FGVSLSLGAFFAGMILAESELS---QS-AAQESLPLRDAFSVLFFISVGMMF 301 (609)
Q Consensus 233 ~--~~~~~~l~~~~~~~~~~~~~-----~g~s~~lgaf~aG~~l~~~~~~---~~-~~~~~~~~~~~~~~~fFv~iG~~l 301 (609)
+ ......+.++..+.....++ ..++...++++.|+.+.|...+ ++ -.+.++.+.+.-..+|-...=|++
T Consensus 217 ~~~~~~~~~i~i~~~iG~~i~~~~~~~~~~lP~fv~~m~~giiirNi~~~~~~~~i~~~~i~~ig~vsL~lFLamaLmsL 296 (368)
T pfam03616 217 NVLIETIAIILICLVVGKYLSDLVKGTGLMLPTFVWCLFVGVILRNTLSLAFKFRVFEPAVDVLGDVSLSLFLAMALMSL 296 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999997283878279999999999999998567467879999998789999999999880
Q ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 47988620256777765554-22122321100025587999999
Q gi|254780924|r 302 NPDILISNPILLMMAVIIVI-IGKALIAFIVVIAFGRSVATALT 344 (609)
Q Consensus 302 ~~~~l~~~~~~~l~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~ 344 (609)
++..+.+.+...+..++... +.-....++..+..|.++.-+..
T Consensus 297 ~Lw~L~~la~Pl~iiL~~Q~i~~~lf~~fV~Fr~mGkdYdAAVm 340 (368)
T pfam03616 297 KLWELADLALPLLIILAVQVVVMVLFAIFVTFRLMGKDYDAAVL 340 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 69999988999999999999999999999867752776379999
No 44
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.93 E-value=0.00079 Score=43.23 Aligned_cols=108 Identities=17% Similarity=0.240 Sum_probs=72.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHH
Q ss_conf 79973774899999999847990899719989999999769929997899989998489314679999359968999999
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYIT 530 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~ 530 (609)
|=++|.|.+|..+|+.|.++|+++.+-|.|++.++++.+.|.... .+++-+- ..++..+.++.+.++.+......
T Consensus 3 IGfIGLG~MG~~mA~nL~~~G~~V~v~d~~~~~~~~~~~~g~~~~----~s~~e~~-~~l~~~~vI~~~vp~g~~v~~vi 77 (298)
T PRK12490 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITAR----HSLEELV-SKLEAPRAIWVMVPAGEVTESVL 77 (298)
T ss_pred EEEECHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEC----CCHHHHH-HHCCCCCEEEEECCCCHHHHHHH
T ss_conf 999834676899999999779948998499899999998699542----8999999-73789988999768945599999
Q ss_pred HHHHHHCCCCEEEEEECC------HHHHHHHHHCCCCEE
Q ss_conf 999995898808999469------899999997699878
Q gi|254780924|r 531 QEARNSNPSILIIALADS------DSEVEHLTRYGADTV 563 (609)
Q Consensus 531 ~~~~~~~~~~~iia~~~~------~~~~~~l~~~Ga~~v 563 (609)
......-....++.-..+ .+..+.+++.|++++
T Consensus 78 ~~l~~~L~~g~iiID~sts~~~~t~~~~~~l~~~gi~fl 116 (298)
T PRK12490 78 KDLYPLLSPGDIVIDGGNSRYKDDLRRAEELAERGIHYV 116 (298)
T ss_pred HHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 968852699988852887899999999999997599030
No 45
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=97.93 E-value=0.00031 Score=46.00 Aligned_cols=243 Identities=14% Similarity=0.193 Sum_probs=117.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--H-HH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999988254168899984151588998999999999999999996788--6-89-999999997423899998765655
Q gi|254780924|r 58 IILLMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWS--L-GG-SVVFGLALSIASTVVLLKALQENR 133 (609)
Q Consensus 58 l~~llF~~Gleld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~--~-~~-all~g~~l~~ts~~vv~~~l~~~~ 133 (609)
+.+.+|..|.++|+|..++..|+...+-...+.....++.....++|.+ + .. ++-+=+++..|.-+.=..+..|.+
T Consensus 54 i~~~l~~~Ga~I~~k~~~~~l~kg~~l~~~K~~i~~~lg~~~~~~~g~~g~flGls~Laiiaa~~~sNggLY~aL~g~yG 133 (305)
T PRK05274 54 LAVFLFCMGASINLRAAGVVLKKGGTLLATKIAVAALLGLIAGKLLGEEGGFAGLSTLAVVAAMDNTNGGLYAALMGQYG 133 (305)
T ss_pred HHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 99999992786450014266775144667999999999999999808777642636999999986675899999999819
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 41144057898998777789999999999861344433013567899998876532101479999999841010000100
Q gi|254780924|r 134 ILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLI 213 (609)
Q Consensus 134 ~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (609)
... |..++.++++-
T Consensus 134 ~~~--------------D~GA~~i~sl~---------------------------------------------------- 147 (305)
T PRK05274 134 DAE--------------DAGAIVLMSLE---------------------------------------------------- 147 (305)
T ss_pred CHH--------------HHHHHHHHHHC----------------------------------------------------
T ss_conf 975--------------50365223443----------------------------------------------------
Q ss_pred ECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 034454387764203567368999999999999998887--411002466666422202761456899999766899999
Q gi|254780924|r 214 FGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSK--LFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSV 291 (609)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~g~s~~lgaf~aG~~l~~~~~~~~~~~~~~~~~~~~~~ 291 (609)
+.-.++...+ +.+ ..+. +.-+-..+--++.|+.+.|.+. +..+.+.+-....+|
T Consensus 148 -----------------~GPf~Tmv~L----G~s-Gla~ip~~~lv~~iiPi~iG~ilGNLD~--~~r~fl~~~~~~~Ip 203 (305)
T PRK05274 148 -----------------DGPFFTMVIL----GAA-GLASFPFMALVGAVLPILVGFILGNLDP--ELREFLGKAVQVLIP 203 (305)
T ss_pred -----------------CCHHHHHHHH----HCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCH--HHHHHHCCCCCEEEE
T ss_conf -----------------5718999998----516-5778988999999999999997626888--999986357761531
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99988653114798862025677776555422122321100025-587999999864-3212202567889887641787
Q gi|254780924|r 292 LFFISVGMMFNPDILISNPILLMMAVIIVIIGKALIAFIVVIAF-GRSVATALTIAA-SLSQIGEFSFILANLGVELGIL 369 (609)
Q Consensus 292 ~fFv~iG~~l~~~~l~~~~~~~l~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~~g~-~l~~~g~~~~v~a~~a~~~g~i 369 (609)
+|...+|..+|+..+.+.-.....+-+...+.-....+..-++. |.+..-.+..+- .-+.....+.+ +...-+....
T Consensus 204 ff~FalG~~inl~~i~~aGl~GilLg~~~~~~tg~~~~~~~r~l~~~~g~aG~A~~ttAGnAvatPa~v-A~~dp~~~~~ 282 (305)
T PRK05274 204 FFAFALGAGIDLEVIVQAGLSGILLGLAVIAVTGIPLYLADKLIGGGNGTAGAAASSTAGNAVATPAAI-AAADPTFAPV 282 (305)
T ss_pred HHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HHHCCHHHHH
T ss_conf 103430378869999871631389999999998289999999970799831025876777877538999-8639215556
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8668778778889999999999
Q gi|254780924|r 370 PDQARDLILASSIISIILNPLV 391 (609)
Q Consensus 370 ~~~~~~~i~~~~~~s~~itp~l 391 (609)
-+.....+-..+++|.+++|++
T Consensus 283 a~~ATaqvAaavivTaiL~P~l 304 (305)
T PRK05274 283 APAATAQVAAAVIVTAILVPIL 304 (305)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8989999999999999861455
No 46
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.92 E-value=0.00021 Score=47.21 Aligned_cols=86 Identities=16% Similarity=0.241 Sum_probs=64.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCC-CEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
Q ss_conf 1799737748999999998479908997199899999997699-299978999899984893146799993599689999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGI-DVIYGNATITKILLMANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~-~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~ 528 (609)
+|.|+|.|-+|-.++..|++.|+++..+|.|++.++++.+.|. +.. .++.+ .+.++|.+|+|++-+...-.
T Consensus 3 kI~IiGlGLIGgSla~al~~~~~~V~g~d~~~~~~~~A~~~g~id~~---~~~~~-----~~~~aDliila~Pv~~~~~~ 74 (280)
T PRK07417 3 NIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEA---STDLS-----LLKDCDLVILALPIGLLLPP 74 (280)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEE---CCCHH-----HHCCCCEEEECCCHHHHHHH
T ss_conf 89999318579999999996899799997999999999986997520---27874-----60579989987974778999
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999999589880899
Q gi|254780924|r 529 ITQEARNSNPSILIIA 544 (609)
Q Consensus 529 ~~~~~~~~~~~~~iia 544 (609)
+-..++...++ .++.
T Consensus 75 ~~~~~~~l~~~-~iit 89 (280)
T PRK07417 75 SEELIPALPPE-AIVT 89 (280)
T ss_pred HHHHHHHCCCC-CEEE
T ss_conf 99998647898-4899
No 47
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.90 E-value=0.00055 Score=44.32 Aligned_cols=110 Identities=18% Similarity=0.259 Sum_probs=74.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHH
Q ss_conf 17997377489999999984799089971998999999976992999789998999848931467999935996899999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYI 529 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~ 529 (609)
+|=++|.|++|+.+++.|.+.|+++.+-|.++++++.+.+.|... +.++.- + .+++|.++.+.+|++.....
T Consensus 3 kIgfIGlG~MG~~ma~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~----~~s~~e---~-~~~~dvvi~~l~~~~~v~~v 74 (295)
T PRK11559 3 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAIADVIAAGAET----ASTAKA---I-AEQCDVIITMLPNSPHVKEV 74 (295)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCC----CCCHHH---H-HHCCCEEEEECCCCCCHHHH
T ss_conf 899984057699999999978995899929999999999859920----399999---9-84388789966898107766
Q ss_pred HHH---HHHHCCCCEEEEEECC--H----HHHHHHHHCCCCEEECHH
Q ss_conf 999---9995898808999469--8----999999976998787658
Q gi|254780924|r 530 TQE---ARNSNPSILIIALADS--D----SEVEHLTRYGADTVVMSA 567 (609)
Q Consensus 530 ~~~---~~~~~~~~~iia~~~~--~----~~~~~l~~~Ga~~vi~p~ 567 (609)
+.- +-+.....++++-..+ + +..+.+++.|++++=-|-
T Consensus 75 ~~g~~gi~~~~~~g~iiid~sT~~p~~~~~~a~~~~~~g~~~lDaPV 121 (295)
T PRK11559 75 ALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIEMLDAPV 121 (295)
T ss_pred HHCCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 30776601138999889989999999999999999965983894247
No 48
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.90 E-value=0.002 Score=40.50 Aligned_cols=39 Identities=15% Similarity=0.008 Sum_probs=19.7
Q ss_pred CEEEECCC---HHHHHHHHHCCCCEEECCCCCHHHHHHCCHHH
Q ss_conf 08997199---89999999769929997899989998489314
Q gi|254780924|r 473 ALLVIEDS---EKKIEELRSLGIDVIYGNATITKILLMANIEK 512 (609)
Q Consensus 473 ~v~vid~~---~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~ 512 (609)
+++++-.. +..++.++++|.+++.-| .|++..+++.-+.
T Consensus 419 hvii~G~Gr~G~~va~~L~~~~~~~vvid-~d~~~v~~~~~~g 460 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLASGIPLVVIE-TSRTRVDELRERG 460 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCHHHHHHHHHCC
T ss_conf 98998988669999999998799889998-9899999999689
No 49
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.89 E-value=0.00024 Score=46.77 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=62.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHH--------HHHCCHHHCCEEEEECC
Q ss_conf 1799737748999999998479908997199899999997699299978999899--------98489314679999359
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKI--------LLMANIEKARSLVVSIS 521 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~--------l~~~~i~~a~~vi~~~~ 521 (609)
+|.|+|.|-+|..++-.|.+.|++|++++. +++.+.++++|..+...+..+..+ -+....+.+|.+++++-
T Consensus 4 kI~IiGaGAvG~~~a~~L~~aG~~V~lv~r-~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 82 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGR-ARIGDEIRAHGLRLTDYRGRDVRVPPDAIAFSTDPAALATADLVLVTVK 82 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEC-HHHHHHHHHCCCEEECCCCCEEEECCCEEEECCCHHHCCCCCEEEEEEC
T ss_conf 799989679999999999858998799956-7899999967909963899768963661561488656589998999707
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 9689999999999958988089994698999999
Q gi|254780924|r 522 TAFEAAYITQEARNSNPSILIIALADSDSEVEHL 555 (609)
Q Consensus 522 ~~~~n~~~~~~~~~~~~~~~iia~~~~~~~~~~l 555 (609)
..+....+-....-..++..++.--|--.+.+.+
T Consensus 83 a~~~~~a~~~l~~~l~~~t~il~lQNGlg~~e~l 116 (341)
T PRK08229 83 SAATADAAAALAGHARPGAVVVSFQNGVRNADVL 116 (341)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH
T ss_conf 5788999999986438996899950477719999
No 50
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.89 E-value=0.00037 Score=45.52 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=74.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHH-H---HCCHHHCCEEEEECCCHHH
Q ss_conf 17997377489999999984799089971998999999976992999789998999-8---4893146799993599689
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKIL-L---MANIEKARSLVVSISTAFE 525 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l-~---~~~i~~a~~vi~~~~~~~~ 525 (609)
+|.|+|.|-+|..++-.|.+.|++|++++.++++.+..+++|.++...+.....-. . .......|.+++++-..+.
T Consensus 2 kI~IiGaGaiG~~~a~~L~~ag~~V~li~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~~~ 81 (307)
T PRK06522 2 KIAILGAGAIGGLFGARLAQAGHDVTLVARGATLAEALNENGLRLLEGGEVFVVPVPAADDPAELGPQDLVILAVKAYQL 81 (307)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCEEEECCCCEEECCCCCCCCHHHCCCCCEEEEECCCCCH
T ss_conf 89999914999999999984899889997888899999968939952897698055034886674898889998066689
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-CCCC
Q ss_conf 99999999995898808999469899999997-6998
Q gi|254780924|r 526 AAYITQEARNSNPSILIIALADSDSEVEHLTR-YGAD 561 (609)
Q Consensus 526 n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~~-~Ga~ 561 (609)
...+-....-..++..|+.--|--++.+.+.+ .+-+
T Consensus 82 ~~a~~~l~~~l~~~t~iv~lqNG~g~~~~l~~~~~~~ 118 (307)
T PRK06522 82 PAALPDLAPLLGPETVVLFLQNGVGHEEVLAAYIGPE 118 (307)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCC
T ss_conf 9999999864599948999616867799998653725
No 51
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.79 E-value=0.00051 Score=44.50 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=67.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCC--HHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 781799737748999999998479908997199--899999997699299978999899984893146799993599689
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS--EKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~--~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
..+++|+|+|+++..=++.|.+.|..++++..+ ++..+...+..+.....+.+..+ ++.+..++++|+|++.
T Consensus 10 gk~vLVVGGG~vA~rK~~~Ll~~gA~VtVvsp~~~~el~~l~~~~~i~~~~~~~~~~d------l~~~~lViaAT~d~~~ 83 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHITVISPEITENLVKLVEEGKIRWKEKEFEPSD------IVDAFLVIAATNDPRV 83 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHH------HCCCCEEEECCCCHHH
T ss_conf 9869998898999999999986899699986999989999997699447616788667------5167044552798999
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 9999999999589880899946989999
Q gi|254780924|r 526 AAYITQEARNSNPSILIIALADSDSEVE 553 (609)
Q Consensus 526 n~~~~~~~~~~~~~~~iia~~~~~~~~~ 553 (609)
|..++..+++ + ..+..++++++..
T Consensus 84 N~~i~~~~~~-~---~lvNvvD~p~~~d 107 (202)
T PRK06718 84 NEAVAEALPE-N---ALFNVIGDAESGN 107 (202)
T ss_pred HHHHHHHHHH-C---CCEEECCCCCCCE
T ss_conf 9999998654-4---8757557865482
No 52
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.77 E-value=0.00028 Score=46.35 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=68.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCC-CCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHH
Q ss_conf 78179973774899999999847990899719989999999769-92999789998999848931467999935996899
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLG-IDVIYGNATITKILLMANIEKARSLVVSISTAFEA 526 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g-~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n 526 (609)
..+++|+|+|+++..=++.|.+.|.+|+++..+ .++++++.. +....- .+++..++.++.++++|+|.+.|
T Consensus 13 ~k~vLVvGGG~VA~rK~~~Ll~~ga~VtVvsp~--~~~el~~l~~i~~~~r------~~~~~dl~~~~lViaATdd~~lN 84 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICEEMKELPYITWKQK------TFSNDDIKDAHLIYAATNQHAVN 84 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHCCCEEEECC------CCCHHHHCCCEEEEECCCCHHHH
T ss_conf 987999889899999999998787969999998--6899984557088704------67846837843999868998999
Q ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 999999999589880899946989999
Q gi|254780924|r 527 AYITQEARNSNPSILIIALADSDSEVE 553 (609)
Q Consensus 527 ~~~~~~~~~~~~~~~iia~~~~~~~~~ 553 (609)
..+...+++.. ++..++++++.+
T Consensus 85 ~~i~~~a~~~~----lvN~~d~~~~~d 107 (157)
T PRK06719 85 MMVKQAAHDFQ----WVNVVSDGTESS 107 (157)
T ss_pred HHHHHHHHHCC----CEEEECCCCCCC
T ss_conf 99999997789----589828988897
No 53
>PRK04972 hypothetical protein; Provisional
Probab=97.74 E-value=0.00087 Score=42.93 Aligned_cols=122 Identities=20% Similarity=0.315 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHHCC
Q ss_conf 99999999999999-987088867999999996274103855847899999999999999882541688999---84151
Q gi|254780924|r 4 IIWGFVLAFIFGAI-ANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDL---ISVRG 79 (609)
Q Consensus 4 l~~~l~~a~i~g~l-a~rl~lP~i~~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l---~~~~~ 79 (609)
+.+.+.+++..|.+ .+.+++-...+-+++|+++|..+..+ +++ .-++|+++.+|..|++.-++-+ |+.+.
T Consensus 17 LflvialG~~lGkiki~g~sLG~~~gvLfvgl~~G~~g~~i--~~~----v~~~gL~LFvy~IGl~~GP~FF~slk~~Gl 90 (558)
T PRK04972 17 LFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSI--NTD----ALNLGFMLFIFCVGVEAGPNFFSIFFRDGK 90 (558)
T ss_pred HHHHHHHHHHHEEEEECCEEECHHHHHHHHHHHHHCCCCCC--CHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999997845114885573236799999999984557777--905----899999999998744127789999986239
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5889989999999999999999967886899--999999974238999987656
Q gi|254780924|r 80 IALPGALIQIILGTALGALMGMVMGWSLGGS--VVFGLALSIASTVVLLKALQE 131 (609)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~a--ll~g~~l~~ts~~vv~~~l~~ 131 (609)
+...++...++...++.....+++|++...+ ++-|+..+..+.+.....+.+
T Consensus 91 ~~~~la~v~v~~~~~~~~~~~~~~gl~~~~~aGl~aGAlT~Tp~LgaA~~al~~ 144 (558)
T PRK04972 91 NYLMLALVMVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRH 144 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHCCHHHHHHHHHHHH
T ss_conf 999999999999999999999993998778999974513144888999999860
No 54
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.72 E-value=0.00046 Score=44.81 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=29.6
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEE
Q ss_conf 799737-7489999999984799089971998999999976992999789998999848931467999
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLV 517 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi 517 (609)
|+|.|. |=+|+++++.|.++|++|.+++.++...+.+...+.+.+.||.+|++.++++ ++.+|.|+
T Consensus 3 iLVTGgtGfiG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~gDl~d~~~~~~~-~~~~d~Vi 69 (328)
T TIGR03466 3 VLVTGATGFVGSAVVRLLLERGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKA-LAGCRALF 69 (328)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHH-HHCCCEEE
T ss_conf 99986777999999999997849899998999865565217977998207999999999-71785897
No 55
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=97.71 E-value=0.00069 Score=43.63 Aligned_cols=113 Identities=18% Similarity=0.292 Sum_probs=75.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCC--C--CHHHH-HHCCHHHCCEEEEECCCHHH
Q ss_conf 7997377489999999984799089971998999999976992999789--9--98999-84893146799993599689
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNA--T--ITKIL-LMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~--~--~~~~l-~~~~i~~a~~vi~~~~~~~~ 525 (609)
|.|+|.|-+|..++-.|.+.|++|.+++.++ +.+.++++|..+...+. . .+... .....++.|.+++++-..+.
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~-~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~~ 79 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAGHDVTLIARGR-HLEAIRENGLRITSPGGERTVPPPVATSASEELGPADLVIVAVKAYQT 79 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEECCC-HHHHHHHCCEEEEECCCCEEEECCEECCCHHHCCCCCEEEEEECCCCH
T ss_conf 9999668999999999997799289997563-678877497699947983898074103865765886799997224588
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-CCCCEEE
Q ss_conf 99999999995898808999469899999997-6998787
Q gi|254780924|r 526 AAYITQEARNSNPSILIIALADSDSEVEHLTR-YGADTVV 564 (609)
Q Consensus 526 n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~~-~Ga~~vi 564 (609)
...+-.......++..++.--|--.+.+.+.+ .+-+.++
T Consensus 80 ~~al~~l~~~l~~~t~iv~lqNG~g~~e~l~~~~~~~~v~ 119 (150)
T pfam02558 80 AEALEDLAPLLGPNTVVLLLQNGLGHEEELREAFPRERVL 119 (150)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEE
T ss_conf 9999998865288838999425877399999875998799
No 56
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.70 E-value=0.0005 Score=44.55 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=60.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 7817997377489999999984799--08997199899999997699299978999899984893146799993599689
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
=++|.|+|.|-+|-.+|+.|.++|. ++..+|.|++..+.+.+.|+--... .+.-+ .+.++|.+|+|++-...
T Consensus 6 f~~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g~id~~~----~~~~e--~~~~~DlIilatPv~~~ 79 (307)
T PRK07502 6 FDRVALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETRARARELGLGDRVT----TSAAE--AVKGADLVILCVPVGAS 79 (307)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCHHC----CCHHH--HHCCCCEEEEECCHHHH
T ss_conf 5668999278799999999985499857999849999999999869975112----77766--40458979991789999
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999995898
Q gi|254780924|r 526 AAYITQEARNSNPS 539 (609)
Q Consensus 526 n~~~~~~~~~~~~~ 539 (609)
.-.+........|+
T Consensus 80 ~~vl~~l~~~l~~~ 93 (307)
T PRK07502 80 GAVAAEIAPHLKPG 93 (307)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999998555899
No 57
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=97.69 E-value=0.00012 Score=48.84 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=70.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
Q ss_conf 81799737748999999998479908997199899999997699299978999899984893146799993599689999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~ 528 (609)
.+++|||||..|+.+|+.++..|-.|.|.|.||-+.-++..+|+++. +.++. +..+|.+|.+|++.+ ..
T Consensus 24 k~vvV~GYG~~GkGvA~~~rg~Ga~V~V~EvDPi~aleA~mdGf~V~----~~~ea-----~~~aDi~VTaTG~~~--vi 92 (162)
T pfam00670 24 KVAVVCGYGDVGKGCAASLKGQGARVIVTEIDPICALQAAMEGFQVV----TLEEV-----VKKADIFVTTTGNKD--II 92 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCC----CHHHH-----HHCCCEEEECCCCCC--CC
T ss_conf 78999678766777999862299989999479306999986499547----88898-----604999999248977--47
Q ss_pred HHHHHHHHCCCCEEEEEECCHH---HHHHHHHCC
Q ss_conf 9999999589880899946989---999999769
Q gi|254780924|r 529 ITQEARNSNPSILIIALADSDS---EVEHLTRYG 559 (609)
Q Consensus 529 ~~~~~~~~~~~~~iia~~~~~~---~~~~l~~~G 559 (609)
-....+.+- +.-|++-+...+ +.+.|++..
T Consensus 93 ~~eh~~~mK-dgaIlaN~GHfd~EIdv~~L~~~~ 125 (162)
T pfam00670 93 TGEHMAKMK-NDAIVCNIGHFDNEIDVAWLNTNG 125 (162)
T ss_pred CHHHHHHHC-CCEEEECCCCCCCEEEHHHHHCCC
T ss_conf 399999844-886998777565227288885757
No 58
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=97.69 E-value=0.0041 Score=38.27 Aligned_cols=134 Identities=22% Similarity=0.283 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 988874110024666664222027614--56899999766899999999886531147988620256-777765554221
Q gi|254780924|r 248 YGSSKLFGVSLSLGAFFAGMILAESEL--SQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNPIL-LMMAVIIVIIGK 324 (609)
Q Consensus 248 ~~~~~~~g~s~~lgaf~aG~~l~~~~~--~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~~~-~l~~~~~~~~~k 324 (609)
.......+.++.+|-.++|+.+++... -.+..+.++-+.++=..++...+|++.|++.+.+.... ........+..-
T Consensus 22 ~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~ 101 (397)
T COG0475 22 GPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAP 101 (397)
T ss_pred HHHHHHCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999809990699997898506123037787419999999999999999998807999999742464567889999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 223211000-25587999999864321220256788988764178786687787788899
Q gi|254780924|r 325 ALIAFIVVI-AFGRSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSII 383 (609)
Q Consensus 325 ~~~~~~~~~-~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~ 383 (609)
+........ ..++++++++..|..++..+. -+....-.+.+....+..+..+.+.++
T Consensus 102 ~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~ 159 (397)
T COG0475 102 FLLGLLLLLGILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVF 159 (397)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHCCHHCHHHHHHHHHHHH
T ss_conf 9999999999975354899999999998389--999999998251104458999999999
No 59
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.68 E-value=0.00073 Score=43.45 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=65.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCH-HHHHHHHHCCC-CEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHH
Q ss_conf 817997377489999999984799089971998-99999997699-2999789998999848931467999935996899
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSE-KKIEELRSLGI-DVIYGNATITKILLMANIEKARSLVVSISTAFEA 526 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~-~~~~~~~~~g~-~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n 526 (609)
..++|+|+|.++..=++.|.+.|-+++++..+. +..+.+.+++- ..+. +..+++-+ .++..++++|+|.+.|
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~-----~~~~lviaAt~d~~ln 86 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDL-----DDAFLVIAATDDEELN 86 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHH-CCCCHHHH-----CCCEEEEEECCCHHHH
T ss_conf 77999899899999999997469979998787449999999834853100-22363653-----6824999916998999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999958
Q gi|254780924|r 527 AYITQEARNSN 537 (609)
Q Consensus 527 ~~~~~~~~~~~ 537 (609)
-.+.+.+++++
T Consensus 87 ~~i~~~a~~~~ 97 (210)
T COG1648 87 ERIAKAARERR 97 (210)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999939
No 60
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC; InterPro: IPR014308 Members of this protein are the accessory protein XdhC, found in baceria, that is responsible for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products..
Probab=97.64 E-value=0.00039 Score=45.34 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=90.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCHHHH-HHHHH----CCCCEEECC--CCCHHHHHHCCHHHCCEEE
Q ss_conf 34781799737748999999998479-9089971998999-99997----699299978--9998999848931467999
Q gi|254780924|r 446 DLCDHVILVGYGRIGKVIVQNLKAAG-IALLVIEDSEKKI-EELRS----LGIDVIYGN--ATITKILLMANIEKARSLV 517 (609)
Q Consensus 446 ~~~~~vii~G~g~~g~~~~~~L~~~~-~~v~vid~~~~~~-~~~~~----~g~~~~~gd--~~~~~~l~~~~i~~a~~vi 517 (609)
....||+|+|.|.+|+.+++.|.... .++..||..++.. -.-.. .|+..+.-| +.=++..+++.-+- +++
T Consensus 113 ~~~~~v~lFGAGHVG~ALv~~La~lP~~~~~WvD~Re~~F~P~~~p~~~~~gV~~~~~~H~P~Pe~~v~~aP~~s--~~l 190 (270)
T TIGR02964 113 PPAPHVVLFGAGHVGRALVRALAPLPECRVTWVDSREEEFYPEDIPLALIDGVAPLATDHSPEPEAEVAEAPPGS--YFL 190 (270)
T ss_pred HCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHCCCCC--EEE
T ss_conf 305817998677188899998616995799986371555487432202547752301688888799998379996--599
Q ss_pred EECCCHHHHHHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHCCCCE
Q ss_conf 935996899999999999589880---899946989999999769987
Q gi|254780924|r 518 VSISTAFEAAYITQEARNSNPSIL---IIALADSDSEVEHLTRYGADT 562 (609)
Q Consensus 518 ~~~~~~~~n~~~~~~~~~~~~~~~---iia~~~~~~~~~~l~~~Ga~~ 562 (609)
+.|.|..--..+|..+-+...=.+ |=+++......++|++.|.|.
T Consensus 191 vlTHdHaLD~~L~~~iL~R~DfAY~GlIGS~TKr~rF~~RL~~~G~~~ 238 (270)
T TIGR02964 191 VLTHDHALDLELCEAILARGDFAYFGLIGSKTKRARFEHRLRARGVDP 238 (270)
T ss_pred EEECCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHCCCCH
T ss_conf 960585899999999962599068802010768999999998568987
No 61
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=97.63 E-value=0.0017 Score=40.95 Aligned_cols=129 Identities=12% Similarity=0.168 Sum_probs=81.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC-------------CHHHCCEE
Q ss_conf 17997377489999999984799089971998999999976992999789998999848-------------93146799
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA-------------NIEKARSL 516 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~-------------~i~~a~~v 516 (609)
.|-|+|.|.+|..+|-.|.+.|++|+.+|.|+++++.+++...+. .+..-.+.+++. .+.++|.+
T Consensus 2 kI~ViGlGyVGl~~a~~la~~G~~V~g~D~d~~~v~~ln~g~~p~--~E~~l~~~l~~~~~~~~~~~~~~~~~i~~~d~i 79 (185)
T pfam03721 2 RIAVIGLGYVGLPTAVCLAEIGHDVVGVDINQSKIDKLNNGKIPI--YEPGLEELLKANVSGRLRFTTDVAEAIKEADVI 79 (185)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCC--CCCCHHHHHHHHHCCCEEEECCHHHHHHHCCEE
T ss_conf 799989787489999999948993999979989999986268974--675889999873408969987879988449899
Q ss_pred EEECCCH--H------HHH-HHHHHH-HHHCCCCEEEEEECC-----HHHHH-HHHHCC------CCEEECHHHHHHHHH
Q ss_conf 9935996--8------999-999999-995898808999469-----89999-999769------987876589999999
Q gi|254780924|r 517 VVSISTA--F------EAA-YITQEA-RNSNPSILIIALADS-----DSEVE-HLTRYG------ADTVVMSAREIALGM 574 (609)
Q Consensus 517 i~~~~~~--~------~n~-~~~~~~-~~~~~~~~iia~~~~-----~~~~~-~l~~~G------a~~vi~p~~~~a~~~ 574 (609)
+++.+.+ + ..+ .++..+ +...++..++.+.+- ++... .+++.+ .+.+.+||+..--..
T Consensus 80 ~I~VpTP~~~~~~~d~s~l~~~~~~i~~~l~~~~liii~STVppGtt~~~~~~l~~~~~~~~~~d~~l~~~PErl~~G~a 159 (185)
T pfam03721 80 FIAVPTPSKKGGAPDLTYVESAARTIGPVLKKGKVVVVKSTVPPGTTEEVVKPILEKRSGKKAVDFNVASNPEFLREGNA 159 (185)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECHHHCCCCCH
T ss_conf 99736876557676635999999999744679989999189998868999999999726677874489878332366422
Q ss_pred HHHHHH
Q ss_conf 999874
Q gi|254780924|r 575 LDRLNQ 580 (609)
Q Consensus 575 ~~~l~~ 580 (609)
.+.+..
T Consensus 160 ~~d~~~ 165 (185)
T pfam03721 160 IHDLLN 165 (185)
T ss_pred HHHCCC
T ss_conf 333169
No 62
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.0043 Score=38.13 Aligned_cols=224 Identities=14% Similarity=0.111 Sum_probs=106.9
Q ss_pred HHHHHHHHHHCCCHHHHHHH---C-CHHH--HHHHHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999882541688999841---5-1588--9989999999999999999-----9678868999999999742389999
Q gi|254780924|r 58 IILLMFGVGLHFSVKDLISV---R-GIAL--PGALIQIILGTALGALMGM-----VMGWSLGGSVVFGLALSIASTVVLL 126 (609)
Q Consensus 58 l~~llF~~Gleld~~~l~~~---~-~~~~--~~~~~~~~~~~~~~~~~~~-----~lg~~~~~all~g~~l~~ts~~vv~ 126 (609)
.++..+..|+|+.-+-+... + +.++ ..+..+++.+..+-....+ .=||-.+. .|+++-..
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy~~~n~~~p~~~~GWaIP~---------ATDiAFAL 141 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYLALNAGDPATLEGWAIPM---------ATDIAFAL 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHEEECCCHHHHCCCCCCC---------HHHHHHHH
T ss_conf 999999999999999971600370454557899861641555664103259846624767650---------78899999
Q ss_pred HHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 876565-5411440578989987777899999999998613444330135678999988765321014799999998410
Q gi|254780924|r 127 KALQEN-RILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVV 205 (609)
Q Consensus 127 ~~l~~~-~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (609)
-++.-. ++..+....-..+-+++||+.++++.++. .+... +... +....
T Consensus 142 GvlaLLG~rVP~sLKiFLlaLAI~DDLGAIvIIAlF---Yt~~L-s~~a--------------------------l~~a~ 191 (390)
T COG3004 142 GVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALF---YTTDL-SMAA--------------------------LGIAA 191 (390)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE---ECCCC-CHHH--------------------------HHHHH
T ss_conf 999995377970599999999998315512798640---07886-6999--------------------------99999
Q ss_pred CCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHH
Q ss_conf 100001000344543877642035673689999999999999988874110024666664222027-----614568999
Q gi|254780924|r 206 AFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAE-----SELSQSAAQ 280 (609)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~-----~~~~~~~~~ 280 (609)
....+.....|+ ..++.+.+ ....... |..-...|.+..++..+.|+.++- .++-|++++
T Consensus 192 ~~i~vL~~lN~~--------~i~~l~~Y--~~~gviL-----W~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh 256 (390)
T COG3004 192 LAIAVLAVLNRL--------GVRRLSPY--LLVGVIL-----WIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEH 256 (390)
T ss_pred HHHHHHHHHHHH--------CCHHHHHH--HHHHHHH-----HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHH
T ss_conf 999999999883--------65011299--9999999-----99999722079999889970653147778895899998
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 997668999999998865311479886---2025677776555422122321100025
Q gi|254780924|r 281 ESLPLRDAFSVLFFISVGMMFNPDILI---SNPILLMMAVIIVIIGKALIAFIVVIAF 335 (609)
Q Consensus 281 ~~~~~~~~~~~~fFv~iG~~l~~~~l~---~~~~~~l~~~~~~~~~k~~~~~~~~~~~ 335 (609)
...|...+++...|.+.-+.++++.+. ..-...+...+..+++|+++++..++..
T Consensus 257 ~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s~l~lgI~lGL~~GKplGIf~fs~lA 314 (390)
T COG3004 257 ALHPWVAFFILPLFAFANAGVSLQGVSLSGLTSPLTLGIILGLFLGKPLGIFLFSWLA 314 (390)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7531288999999987257863025554221111499999999835722103338999
No 63
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=97.60 E-value=0.00047 Score=44.80 Aligned_cols=99 Identities=21% Similarity=0.251 Sum_probs=69.5
Q ss_pred EECCCHHHHHHHHHHHHCCCCEEEECC-CHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHH
Q ss_conf 973774899999999847990899719-9899999997699299978999899984893146799993599689999999
Q gi|254780924|r 453 LVGYGRIGKVIVQNLKAAGIALLVIED-SEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQ 531 (609)
Q Consensus 453 i~G~g~~g~~~~~~L~~~~~~v~vid~-~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~ 531 (609)
|+|.||+|..++..|++.|++++.+-. +++..+++.+.- +.-.-+ .+|+ ++++|.++++++||+.--....
T Consensus 2 iIGaGrvG~~L~~al~~aGh~v~gv~srs~~s~~~a~~~~-~~~~~~--~~ev-----~~~adlv~itvPDd~I~~vv~~ 73 (111)
T pfam10727 2 IISAGRVGVALGEALERAGHVVHAISAISDASRERAERRL-DSPVLP--IPDV-----IRRAELVVLAVPDAELPGLVEG 73 (111)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHC-CCCCCC--HHHH-----HHHCCEEEEECCHHHHHHHHHH
T ss_conf 4376577999999999789828999838988999999866-997679--5898-----9767999998978889999999
Q ss_pred HHHHHCCCCEEEEEECCHHHHHHH---HHCCC
Q ss_conf 999958988089994698999999---97699
Q gi|254780924|r 532 EARNSNPSILIIALADSDSEVEHL---TRYGA 560 (609)
Q Consensus 532 ~~~~~~~~~~iia~~~~~~~~~~l---~~~Ga 560 (609)
.++...|. ++++-+.-....+.| ++.|+
T Consensus 74 la~~~~~G-qiV~HtSGa~g~~vL~pa~~~GA 104 (111)
T pfam10727 74 LAATVRRG-QIVAHTSGAHGIGILAPLETSGA 104 (111)
T ss_pred HHHHCCCC-CEEEECCCCCHHHHHCHHHHCCC
T ss_conf 98326799-79998668750776144987898
No 64
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.58 E-value=0.0015 Score=41.23 Aligned_cols=108 Identities=13% Similarity=0.200 Sum_probs=67.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCC-CCEEECCCCCHHHH---HHCCHHHCCEEEEECCCHH
Q ss_conf 8179973774899999999847990899719989999999769-92999789998999---8489314679999359968
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLG-IDVIYGNATITKIL---LMANIEKARSLVVSISTAF 524 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g-~~~~~gd~~~~~~l---~~~~i~~a~~vi~~~~~~~ 524 (609)
-+|.|+|.|-+|..++-.|.+.|++|..++.++++.+..++.| ......+..+.-.. .....+..|.+++++-..+
T Consensus 3 MkI~IiGaGAiG~~~a~~L~~ag~dV~lv~r~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~D~vivavK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAPEPIHRLLVACKAYD 82 (305)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCEEEEEECCCC
T ss_conf 88999882399999999998489973999947899999997899899868955787404657665788778999804256
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 99999999999589880899946989999999
Q gi|254780924|r 525 EAAYITQEARNSNPSILIIALADSDSEVEHLT 556 (609)
Q Consensus 525 ~n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~ 556 (609)
....+.......+++..|+.--|--++.+.+.
T Consensus 83 ~~~a~~~l~~~l~~~t~Iv~lQNGlg~~e~la 114 (305)
T PRK05708 83 AEPAVASLAHRLAPGAELLLLQNGLGSQDAVA 114 (305)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
T ss_conf 89999998864499958999437764799999
No 65
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.57 E-value=0.0022 Score=40.10 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=83.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCC----CCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 17997377489999999984799089971998999999976992999789----99899984893146799993599689
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNA----TITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~----~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
.|.|+|.|-+|...+-.|.+.|.+|.++-.++. .+++++.|+.+...+. .....-......++|.+++++-.-+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q~ 80 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQL 80 (307)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECHHH-HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCH
T ss_conf 599987878999999999858995799810899-9999878979981688522443235673336788889998042238
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCE
Q ss_conf 9999999999589880899946989999999769987
Q gi|254780924|r 526 AAYITQEARNSNPSILIIALADSDSEVEHLTRYGADT 562 (609)
Q Consensus 526 n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~~~Ga~~ 562 (609)
+..+....+...++..|+.--|--.+.+.+++..-..
T Consensus 81 ~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~ 117 (307)
T COG1893 81 EEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE 117 (307)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCC
T ss_conf 9999998730799848999708972699998738834
No 66
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.56 E-value=0.00078 Score=43.25 Aligned_cols=12 Identities=8% Similarity=-0.191 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999998
Q gi|254780924|r 567 AREIALGMLDRL 578 (609)
Q Consensus 567 ~~~~a~~~~~~l 578 (609)
+++-|+...+.+
T Consensus 479 yeeRG~~F~~~V 490 (501)
T PRK02006 479 YAHRAQVFRAAV 490 (501)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 67
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.56 E-value=0.0041 Score=38.29 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=67.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHH-HHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
Q ss_conf 1799737748999999998479908997199899-999997699299978999899984893146799993599689999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKK-IEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~-~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~ 528 (609)
+|=.+|.|.+|...++.|.+.|+++.+-|.++++ ++.+.+.|.... .++ ..-++++|.+|.+.+|++.-..
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a----~s~----~eaa~~aDvVitmv~~~~~V~~ 73 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVA----ASP----AEAAAEADVVITMLPDDAAVRA 73 (286)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEC----CCH----HHHHHHCCEEEEECCCHHHHHH
T ss_conf 07998573525999999997798789980885665689997298003----889----9999619989996179899999
Q ss_pred HHH----HHHHHCCCCEEEEEE--CC----HHHHHHHHHCCCCEEECH
Q ss_conf 999----999958988089994--69----899999997699878765
Q gi|254780924|r 529 ITQ----EARNSNPSILIIALA--DS----DSEVEHLTRYGADTVVMS 566 (609)
Q Consensus 529 ~~~----~~~~~~~~~~iia~~--~~----~~~~~~l~~~Ga~~vi~p 566 (609)
... .+....|. +++.-. .+ ++..+.+++.|.+++=-|
T Consensus 74 V~~g~~g~~~~~~~G-~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAP 120 (286)
T COG2084 74 VLFGENGLLEGLKPG-AIVIDMSTISPETARELAAALAAKGLEFLDAP 120 (286)
T ss_pred HHHCCCCHHHCCCCC-CEEEECCCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf 981853353337899-78998789998999999999996698689467
No 68
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.54 E-value=0.00091 Score=42.78 Aligned_cols=82 Identities=12% Similarity=0.215 Sum_probs=58.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 17997377489999999984799--0899719989999999769929997899989998489314679999359968999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
+|.|+|.|-+|..+++.|++.+. +|..+|.|++..+.+.+.|.-- ...+ . ..+.++|.+++|++-+....
T Consensus 2 ~I~IiGlGLiGgSla~alk~~~~~~~V~g~d~~~~~~~~A~~~g~id---~~~~---~--~~i~~aDlVila~Pv~~~~~ 73 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKENKLISCVYGYDHNEEHEKDALDLGLVD---EIVE---F--EEIKECDVIFLAIPVDAIIE 73 (275)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCC---CCCC---H--HHCCCCCEEEEECCHHHHHH
T ss_conf 89999008789999999995099867999959999999999869986---1067---3--12365798999176999999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999958988
Q gi|254780924|r 528 YITQEARNSNPSI 540 (609)
Q Consensus 528 ~~~~~~~~~~~~~ 540 (609)
.+-.. +...++.
T Consensus 74 ~l~~l-~~l~~~~ 85 (275)
T PRK08507 74 ILQKL-LDIKENT 85 (275)
T ss_pred HHHHH-HHCCCCC
T ss_conf 99998-6046788
No 69
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.53 E-value=0.0045 Score=37.99 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=68.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHH
Q ss_conf 7817997377489999999984799089971998999999976-992999789998999848931467999935996899
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTAFEA 526 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n 526 (609)
..+|+|-|+|.+|+.+++.|.+.|.++++.|.|++......+. +.+.+. ..+.| -.++|.++-|--....|
T Consensus 28 gk~VaIqG~GnVG~~~A~~l~~~Gakvvv~d~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~DIl~PcA~~~~i~ 99 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVA----PEEIY----SVDADVFAPCALGGVIN 99 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEC----CHHHH----CCCCCEEEECCCCCCCC
T ss_conf 99999989879999999999967997999826889999998568988937----33232----27776886514115468
Q ss_pred HHHHHHHHHHCCCCEEEEE-ECC----HHHHHHHHHCCC
Q ss_conf 9999999995898808999-469----899999997699
Q gi|254780924|r 527 AYITQEARNSNPSILIIAL-ADS----DSEVEHLTRYGA 560 (609)
Q Consensus 527 ~~~~~~~~~~~~~~~iia~-~~~----~~~~~~l~~~Ga 560 (609)
...+++. +.++|+- +|+ ++..+.|++-|+
T Consensus 100 ---~~~a~~i--~ak~I~e~AN~p~t~~~~~~~L~~rgI 133 (200)
T cd01075 100 ---DDTIPQL--KAKAIAGAANNQLADPRHGQMLHERGI 133 (200)
T ss_pred ---HHHHHHC--CCCEEEECCCCCCCCHHHHHHHHHCCE
T ss_conf ---9999870--896997356799999789999985992
No 70
>PRK10637 cysG siroheme synthase; Provisional
Probab=97.53 E-value=0.0029 Score=39.28 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCCCCCEEEECCCHH-----HHHHHHHHHHCCCCEEEECC--CHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEE
Q ss_conf 134781799737748-----99999999847990899719--98999999976992999789998999848931467999
Q gi|254780924|r 445 TDLCDHVILVGYGRI-----GKVIVQNLKAAGIALLVIED--SEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLV 517 (609)
Q Consensus 445 ~~~~~~vii~G~g~~-----g~~~~~~L~~~~~~v~vid~--~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi 517 (609)
.+.+++|.++|.|+= ...-.+.| +.-|+++.|. +++..+.++++...++.|......
T Consensus 212 ~~~~g~v~lvgaGpGd~~llT~~a~~~l--~~Advv~~d~lv~~~il~~~~~~ae~i~vgK~~g~~-------------- 275 (457)
T PRK10637 212 LDHRGEVVLVGAGPGDAGLLTLKGLQQI--QQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYH-------------- 275 (457)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHH--HHCCEEEECCCCCHHHHHHCCCCCEEEEEECCCCCC--------------
T ss_conf 7889779999508998557799999999--759999982779989996447898899960678888--------------
Q ss_pred EECCCHHHHHHHHHHHHHHCCCCEEEEEECC---------HHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 9359968999999999995898808999469---------89999999769987876589999999999874210
Q gi|254780924|r 518 VSISTAFEAAYITQEARNSNPSILIIALADS---------DSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHH 583 (609)
Q Consensus 518 ~~~~~~~~n~~~~~~~~~~~~~~~iia~~~~---------~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~~~ 583 (609)
..+-++.|..++..+|+ .+-++|... .++.+.|.+.|+..-+-|---++...+....-+..
T Consensus 276 -~~~q~~i~~llv~~a~~----G~~VvRLk~GDP~ifGr~~EE~~~l~~~Gi~~eVvPGItsa~a~aa~agipLT 345 (457)
T PRK10637 276 -CVPQEEINQILLREAQK----GKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLT 345 (457)
T ss_pred -CCCHHHHHHHHHHHHHC----CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCC
T ss_conf -87899999999999858----99799984899864343899999999789988998997677788997398766
No 71
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=97.53 E-value=0.0012 Score=42.00 Aligned_cols=188 Identities=16% Similarity=0.177 Sum_probs=116.7
Q ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCCCCCCCCCCCCCC
Q ss_conf 786687787-788899999999999867899999998754321000000111222100001----222333321112223
Q gi|254780924|r 369 LPDQARDLI-LASSIISIILNPLVFVLAEFLQSFLVLRFARVTSSTEQYSHICVEQDTKQE----VPVESILEQQEVTIQ 443 (609)
Q Consensus 369 i~~~~~~~i-~~~~~~s~~itp~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 443 (609)
++++...-+ --..++|-+-+|.|-++.......+..... +|-+-. +-.++...--....+
T Consensus 83 l~~~~~~~~~~~~~~~~Gisn~yL~~l~~~a~~~Li~l~e---------------rDdvAIYNSIPtaEGAimMA~e~td 147 (288)
T TIGR02853 83 LKPELLEETKKHCTIYVGISNDYLEELAAEAGVKLIELFE---------------RDDVAIYNSIPTAEGAIMMAIEHTD 147 (288)
T ss_pred ECHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECC---------------CCCEEEECCCCCHHHHHHHHHHCCC
T ss_conf 4668995207943899737765899999871960241003---------------5753344587556789999972489
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH
Q ss_conf 21347817997377489999999984799089971998999999976992999789998999848931467999935996
Q gi|254780924|r 444 KTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA 523 (609)
Q Consensus 444 ~~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~ 523 (609)
-+=...+++|+|+||+|+.+||.++.-|-+|.|-=++++...|..+.|++ +-..+-|++ .+.|+|.++-|.|.-
T Consensus 148 ~TIHgS~v~VlGfGRtG~tiAr~f~aLGA~V~V~AR~~~dlARI~E~g~~-----P~~~~~L~~-~v~e~DIviNTiPaL 221 (288)
T TIGR02853 148 FTIHGSNVMVLGFGRTGMTIARTFSALGARVSVGARSSADLARITEMGLE-----PVPLNKLEE-KVAEIDIVINTIPAL 221 (288)
T ss_pred CCEECCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCC-----CCCHHHHHH-HHCCCCEEEECCCCC
T ss_conf 62501345788447056899999972698057531783678999996068-----827167887-650002477067630
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHCCCCEEECHHH-------HHHHHHHHHHHH
Q ss_conf 89999999999958988089994698--9999999769987876589-------999999999874
Q gi|254780924|r 524 FEAAYITQEARNSNPSILIIALADSD--SEVEHLTRYGADTVVMSAR-------EIALGMLDRLNQ 580 (609)
Q Consensus 524 ~~n~~~~~~~~~~~~~~~iia~~~~~--~~~~~l~~~Ga~~vi~p~~-------~~a~~~~~~l~~ 580 (609)
-......+..++ +.-||=-+.+| .+-+.-++.|+.-+.-|-. -+|+=+|+-+.+
T Consensus 222 vlt~~~l~~lp~---~AviiDLAS~PGGtDF~yAk~~Gi~A~LAPGLPGiVAPkTAGkIlA~VL~~ 284 (288)
T TIGR02853 222 VLTKDVLSKLPK---HAVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILANVLSE 284 (288)
T ss_pred CCCHHHHHHCCC---CCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 036589952685---848997327848737698986298289718787830723567899999998
No 72
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.52 E-value=0.00084 Score=43.02 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=14.8
Q ss_pred EEEECCCHHH---HHHHHHHHHCCCCEEEECCCHHHHHH
Q ss_conf 7997377489---99999998479908997199899999
Q gi|254780924|r 451 VILVGYGRIG---KVIVQNLKAAGIALLVIEDSEKKIEE 486 (609)
Q Consensus 451 vii~G~g~~g---~~~~~~L~~~~~~v~vid~~~~~~~~ 486 (609)
++|+|+-.=| ..+.+.+.++-..++++-.|.+.+.+
T Consensus 353 ilI~GG~~Kg~~~~~L~~~~~~~v~~v~l~G~d~~~i~~ 391 (487)
T PRK03369 353 VWIAGGLLKGASVDALVAEMASRLVGAVLIGRDRAVVAE 391 (487)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHEEEEEEECCCHHHHHH
T ss_conf 896155436777077899997542599997888899999
No 73
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.49 E-value=0.00036 Score=45.57 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=53.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH
Q ss_conf 817997377489999999984799089971998999999976992999789998999848931467999935996
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA 523 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~ 523 (609)
..++|||||..|+-+|+.+...|.+|.|.|-||-+.-++..+|++|..-+ + -.+.+|.+|.+|+|.
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~--------~-Aa~~gDifiT~TGnk 275 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTME--------E-AAKTGDIFVTATGNK 275 (420)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEHH--------H-HHHCCCEEEECCCCC
T ss_conf 66999635644366999862289869998248178899863571887866--------7-442189899866885
No 74
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.49 E-value=0.00047 Score=44.75 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=4.2
Q ss_pred HHHHHCCCCEE
Q ss_conf 99995898808
Q gi|254780924|r 532 EARNSNPSILI 542 (609)
Q Consensus 532 ~~~~~~~~~~i 542 (609)
..++..++.++
T Consensus 400 ~l~~~~~~~~~ 410 (476)
T PRK00141 400 AVKEHAPDAPV 410 (476)
T ss_pred HHHHHCCCCCE
T ss_conf 99854788826
No 75
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=97.46 E-value=0.0018 Score=40.71 Aligned_cols=95 Identities=18% Similarity=0.300 Sum_probs=63.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEE-CCCC-CHHH-----HHHCCHHHCCEEEEECCC
Q ss_conf 17997377489999999984799089971998999999976992999-7899-9899-----984893146799993599
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIY-GNAT-ITKI-----LLMANIEKARSLVVSIST 522 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~-gd~~-~~~~-----l~~~~i~~a~~vi~~~~~ 522 (609)
+|-|+|.|.+|..++..|.++|++|.+.+.|++.++.+.+...+-.| -+.. .+.+ +++ -++++|.++.+++.
T Consensus 2 KI~IiGaG~wGtAla~~la~n~~~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~-a~~~adiIiiavps 80 (159)
T pfam01210 2 KIAVLGAGSWGTALAKVLARNGHEVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEE-AIKGADIIVLAVPS 80 (159)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHH-HHHCCCEEEEECCH
T ss_conf 89999969999999999998799899999043666778866978210478645553054288999-98379899991748
Q ss_pred HHHHHHHHHHHHHHC-CCCEEEEEE
Q ss_conf 689999999999958-988089994
Q gi|254780924|r 523 AFEAAYITQEARNSN-PSILIIALA 546 (609)
Q Consensus 523 ~~~n~~~~~~~~~~~-~~~~iia~~ 546 (609)
....-. +...+.+. ++..++.-+
T Consensus 81 ~~~~~~-~~~i~~~~~~~~~iv~~s 104 (159)
T pfam01210 81 QALREV-LKQLKGLLSPGAILVSLT 104 (159)
T ss_pred HHHHHH-HHHHHHHCCCCCEEEEEE
T ss_conf 899999-999986557655688875
No 76
>pfam03956 DUF340 Membrane protein of unknown function (DUF340). Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=97.45 E-value=0.0048 Score=37.83 Aligned_cols=88 Identities=17% Similarity=0.305 Sum_probs=67.0
Q ss_pred HHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999962741038558478999999999999998825416-----889998415158899899999999999999999
Q gi|254780924|r 28 GYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHF-----SVKDLISVRGIALPGALIQIILGTALGALMGMV 102 (609)
Q Consensus 28 ~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Glel-----d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (609)
+..+.|+++|-... . +.+..+..++..+.+++|..|.++ ..+++|+..++.+......++.+...+...++.
T Consensus 3 ~~~i~G~i~G~~~~--~-~~~~~~~~~~~~L~~Llf~vGi~lg~~~~~~~~i~~~~~~~llip~~~i~gsl~gg~i~s~~ 79 (191)
T pfam03956 3 AAVILGFILGLFLK--P-PFSLSDNASTYLLYLLLFLIGIQLGNSGISLRQILKLNKKGLLIPLVTILGSLLGGLIAALI 79 (191)
T ss_pred EEHHHHHHHHHHCC--C-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 52765887986306--7-62210058999999999999898167853499999757138899999999999999999999
Q ss_pred HCCCHHHHHHHHHHHH
Q ss_conf 6788689999999997
Q gi|254780924|r 103 MGWSLGGSVVFGLALS 118 (609)
Q Consensus 103 lg~~~~~all~g~~l~ 118 (609)
+++|+.+++.+++-+.
T Consensus 80 l~~~~~~~lAv~sGfG 95 (191)
T pfam03956 80 LGIPLKQGLAVASGFG 95 (191)
T ss_pred HCCCHHHHHHHHHCCC
T ss_conf 4899999999972675
No 77
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=97.43 E-value=0.005 Score=37.71 Aligned_cols=111 Identities=14% Similarity=0.240 Sum_probs=87.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEECCCH--HHHHHHHHCCCCEEECCCCCHHH-------HH-HCCH--HHCCE
Q ss_conf 1799737748999999998479--9089971998--99999997699299978999899-------98-4893--14679
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAG--IALLVIEDSE--KKIEELRSLGIDVIYGNATITKI-------LL-MANI--EKARS 515 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~--~~v~vid~~~--~~~~~~~~~g~~~~~gd~~~~~~-------l~-~~~i--~~a~~ 515 (609)
.|.|+|.|-+|..++-.|.+.| ++|.+++.++ ++.++++++|+.+..-+..+... -. .... .++|.
T Consensus 1 ~i~i~G~GA~G~l~ga~L~~~g~~~~V~~~~R~~r~~~~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 80 (332)
T TIGR00745 1 KIAIIGAGAVGSLYGARLARAGANHDVTLLARGKRPKQLEALNQEGLRIVSLDGEGVFELKIPVSAATDPETLPPQKADL 80 (332)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCEEECCCCCCCCCCCCE
T ss_conf 96899517889999999873189951899988721688999985883897625677503304412204753357877548
Q ss_pred EEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC
Q ss_conf 999359968999999999995898808999469899999997699
Q gi|254780924|r 516 LVVSISTAFEAAYITQEARNSNPSILIIALADSDSEVEHLTRYGA 560 (609)
Q Consensus 516 vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~~~Ga 560 (609)
+++++=.-+.-..+.......+++..|+.--|--.+.+.+.+...
T Consensus 81 ~~~~~K~~~~~~~~~~~~~~~~~~~~vl~lqNG~g~~e~l~~~~~ 125 (332)
T TIGR00745 81 VIITVKAYQTEEALALLLPLIGPNTVVLLLQNGLGHEEKLAELLP 125 (332)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCC
T ss_conf 999703500489999998641888279997388027999998506
No 78
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.42 E-value=0.0043 Score=38.11 Aligned_cols=115 Identities=18% Similarity=0.275 Sum_probs=73.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEE--ECCCCC--HHHHH-HCCHHHCCEEEEECC
Q ss_conf 4781799737748999999998479908997199899999997699299--978999--89998-489314679999359
Q gi|254780924|r 447 LCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVI--YGNATI--TKILL-MANIEKARSLVVSIS 521 (609)
Q Consensus 447 ~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~--~gd~~~--~~~l~-~~~i~~a~~vi~~~~ 521 (609)
.+.+|.|+|.|-+|..++-.|.+.|++|.++...+ .+..+++|+.+. .|+.+- ..... ......+|.+++++-
T Consensus 4 ~~~kI~IiGaGAiG~~~a~~L~~aG~~V~li~r~~--~~ai~~~Gl~i~~~~g~~~~~~~~~~~~~~~~~~~D~viv~vK 81 (313)
T PRK06249 4 ETPRIAIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPQVQAYRSAEDMPPCDWVLVGLK 81 (313)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHHHHHCCEEEEECCCCEEECCCEEECCHHHCCCCCEEEEECC
T ss_conf 98889999914999999999996699569996755--9999868859996698289768402369778399658999536
Q ss_pred CHHHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHH-CCCCEEE
Q ss_conf 96899999999999-5898808999469899999997-6998787
Q gi|254780924|r 522 TAFEAAYITQEARN-SNPSILIIALADSDSEVEHLTR-YGADTVV 564 (609)
Q Consensus 522 ~~~~n~~~~~~~~~-~~~~~~iia~~~~~~~~~~l~~-~Ga~~vi 564 (609)
..+... +...++. .+|+..++.--|--++.+.+.+ .|-+.|+
T Consensus 82 s~~~~~-~~~~l~~~~~~~t~il~lQNG~g~~~~l~~~~~~~~vl 125 (313)
T PRK06249 82 TTANAL-LAPLIPQVAAPGAKVLLLQNGLGVEEQLRPLLPAEHLL 125 (313)
T ss_pred CCCHHH-HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEE
T ss_conf 677899-99987864489958999447666188887537888389
No 79
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.41 E-value=0.0046 Score=37.94 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 48999999998479908997199899999997699299978999899984893146799993599689999999999958
Q gi|254780924|r 458 RIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSN 537 (609)
Q Consensus 458 ~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~ 537 (609)
--+..+++.|.++|.++.+-|..-+.-+ ..+... ..+. + .-++++|.++++|+.++=...-....++..
T Consensus 333 Sps~~ii~~L~~~g~~V~~~DP~v~~~~---~~~~~~----~~~~---~-~~~~~aD~iii~t~h~ef~~ld~~~i~~~~ 401 (411)
T TIGR03026 333 SPALDIIELLKEKGAKVKAYDPLVPEEE---VKGLPL----IDDL---E-EALKGADALVILTDHDEFKDLDLEKIKDLM 401 (411)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCHHH---HHCCCC----CCCH---H-HHHHCCCEEEEECCCHHHHCCCHHHHHHHC
T ss_conf 8299999999978898999999899899---812777----7999---9-998469889995598667238999999746
Q ss_pred CCCEEE
Q ss_conf 988089
Q gi|254780924|r 538 PSILII 543 (609)
Q Consensus 538 ~~~~ii 543 (609)
.. +++
T Consensus 402 ~~-~~i 406 (411)
T TIGR03026 402 KG-KVV 406 (411)
T ss_pred CC-CEE
T ss_conf 99-989
No 80
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.41 E-value=0.0097 Score=35.71 Aligned_cols=10 Identities=0% Similarity=-0.227 Sum_probs=4.2
Q ss_pred CHHHHHHHHH
Q ss_conf 4798862025
Q gi|254780924|r 302 NPDILISNPI 311 (609)
Q Consensus 302 ~~~~l~~~~~ 311 (609)
++..++..|-
T Consensus 217 ~i~~vf~~Wn 226 (474)
T PTZ00142 217 ELSEVFNKWN 226 (474)
T ss_pred HHHHHHHHHH
T ss_conf 9999999983
No 81
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.0026 Score=39.70 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=71.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHH
Q ss_conf 79973774899999999847990899719989999999769929997899989998489314679999359968999999
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYIT 530 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~ 530 (609)
+=.+|.||.|.++.+.|.++|+++++.|.|++.++++..+|.. +-.+=.+...+.+..++-++.+--+| .++..+-
T Consensus 3 iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~---~a~sl~el~~~L~~pr~vWlMvPag~-it~~vi~ 78 (300)
T COG1023 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGAT---GAASLDELVAKLSAPRIVWLMVPAGD-ITDAVID 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCC---CCCCHHHHHHHCCCCCEEEEECCCCC-CHHHHHH
T ss_conf 1154000526999999983897289973888999999865775---43679999974698747999733777-3689999
Q ss_pred HHHHHHCCCCEEEEEECCHHHH------HHHHHCCCCEE
Q ss_conf 9999958988089994698999------99997699878
Q gi|254780924|r 531 QEARNSNPSILIIALADSDSEV------EHLTRYGADTV 563 (609)
Q Consensus 531 ~~~~~~~~~~~iia~~~~~~~~------~~l~~~Ga~~v 563 (609)
..+-.+.+. .++.--.|..+. +.+.+.|++.+
T Consensus 79 ~la~~L~~G-DivIDGGNS~y~Ds~rr~~~l~~kgi~fl 116 (300)
T COG1023 79 DLAPLLSAG-DIVIDGGNSNYKDSLRRAKLLAEKGIHFL 116 (300)
T ss_pred HHHHHCCCC-CEEEECCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 988536788-88987886325778999998876597178
No 82
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=97.39 E-value=0.0003 Score=46.10 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=62.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC-CHHHCCEEEEECCCHHHH
Q ss_conf 7817997377489999999984799089971998999999976992999789998999848-931467999935996899
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA-NIEKARSLVVSISTAFEA 526 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~-~i~~a~~vi~~~~~~~~n 526 (609)
..+|.|+|.|+.|+-++..-.+.|+++.++|.+++.- +.+-....+.+|.+|.+.+++. .-.++|.+. ++.+..+
T Consensus 12 ~kkIgIlGgGQLg~Mla~aA~~LG~~vivld~~~d~P--A~~vAd~~~~~~~~D~~al~~~a~~~~~DvvT--~E~E~V~ 87 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAP--AMQVAHRSHVIDMLDGDALRAVIEREKPDLIV--PEIEAIA 87 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC--HHHHCCEEEECCCCCHHHHHHHHHHHCCCEEE--ECCCCCC
T ss_conf 8889998988999999999998799899984899594--46728657977878999999999983899899--7854478
Q ss_pred HHHHHHHHHH----CCCCEEEEEECCHHHHHHH--HHCCCC
Q ss_conf 9999999995----8988089994698999999--976998
Q gi|254780924|r 527 AYITQEARNS----NPSILIIALADSDSEVEHL--TRYGAD 561 (609)
Q Consensus 527 ~~~~~~~~~~----~~~~~iia~~~~~~~~~~l--~~~Ga~ 561 (609)
......+.+. .|..+.+..+.|+...+++ +++|+.
T Consensus 88 ~~~L~~le~~G~~v~Ps~~al~i~qdR~~~k~~~~~~lgIP 128 (395)
T PRK09288 88 TDALVELEAEGFNVVPTARATRLTMNREGIRRLAAEELGLP 128 (395)
T ss_pred HHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999998689336799999999876789999999746999
No 83
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.39 E-value=0.00048 Score=44.72 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=64.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 78179973774899999999847990899719989999999769929997899989998489314679999359968999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
-..++|||||-.|+-+|+.++..|..|.|.|-||-+.-++..+|++|..- ++ -+..+|.+|.+|+|.+ +
T Consensus 254 GK~vVV~GYG~~GkG~A~~~rg~GA~ViVtEiDPi~ALqA~MdGf~V~~m----~e-----a~~~~DifVTaTGn~~--V 322 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVLL----ED-----VVETADIFVTATGNDD--I 322 (476)
T ss_pred CCEEEEEECCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCEEEEH----HH-----HHHHCCEEEEECCCCC--C
T ss_conf 75899950453012147665358978999616807899987458787569----99-----8833999999349977--4
Q ss_pred HHHHHHHHHCCCCEEEEEE
Q ss_conf 9999999958988089994
Q gi|254780924|r 528 YITQEARNSNPSILIIALA 546 (609)
Q Consensus 528 ~~~~~~~~~~~~~~iia~~ 546 (609)
....+.+..- +.-|++-+
T Consensus 323 I~~~H~~~MK-dgaIl~N~ 340 (476)
T PTZ00075 323 ITLEHFPRMK-DDAIVGNI 340 (476)
T ss_pred CCHHHHHHHC-CCEEEEEC
T ss_conf 6899998653-78099945
No 84
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.35 E-value=0.00073 Score=43.43 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=61.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 78179973774899999999847990899719989999999769929997899989998489314679999359968999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
-..++|||||..|+-+|+.++..|-.|.|.|.||-+.-++..+|+++.-- .+ -+..+|.+|.+|+|. |.
T Consensus 202 GK~vVV~GYG~~GkG~A~r~rglGA~V~VtEvDPi~ALeA~mDGf~V~~m----~~-----a~~~~DifiTaTGn~--~V 270 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTM----EE-----AVKEGDIFVTTTGNK--DI 270 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCH----HH-----HHHHCCEEEEECCCC--CC
T ss_conf 77799945776356889988658988999717758899998568945779----99-----972389999933887--73
Q ss_pred HHHHHHHHHCCCCEEEEEE
Q ss_conf 9999999958988089994
Q gi|254780924|r 528 YITQEARNSNPSILIIALA 546 (609)
Q Consensus 528 ~~~~~~~~~~~~~~iia~~ 546 (609)
......+..- +.-|++-+
T Consensus 271 I~~eH~~~MK-dgaIl~N~ 288 (413)
T cd00401 271 ITGEHFEQMK-DGAIVCNI 288 (413)
T ss_pred CCHHHHHHHC-CCEEEEEC
T ss_conf 7399999845-88699806
No 85
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.34 E-value=0.0021 Score=40.23 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=62.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCH----HHH-HHCCHHHCCEEEEECCCHH
Q ss_conf 17997377489999999984799089971998999999976992999789998----999-8489314679999359968
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATIT----KIL-LMANIEKARSLVVSISTAF 524 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~----~~l-~~~~i~~a~~vi~~~~~~~ 524 (609)
+|.|+|.|-+|...+-.|.+.|++|.++. ..++.+..+++|......+.... .+- .+......|.+++++-..+
T Consensus 2 kI~I~GaGAiG~~~a~~L~~~g~~V~lv~-r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~viva~Ks~~ 80 (306)
T PRK12921 2 KIAVVGAGAVGGTFGARLLEAGRDVTFLG-RSARAEALREKGLVIRSDHGDVTVPGPVITDPEEITGPFDLVILAVKAYQ 80 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHCCCCCEEEEEECCCC
T ss_conf 89999924999999999983699889997-00099999978969997797699806105080565689768999704567
Q ss_pred HHHHHHHHHHHH-CCCCEEEEEECCHHHHHHH
Q ss_conf 999999999995-8988089994698999999
Q gi|254780924|r 525 EAAYITQEARNS-NPSILIIALADSDSEVEHL 555 (609)
Q Consensus 525 ~n~~~~~~~~~~-~~~~~iia~~~~~~~~~~l 555 (609)
..- ++..++.. .++..++.--|--.+.+.+
T Consensus 81 ~~~-a~~~l~~~~~~~t~il~lQNG~g~~~~l 111 (306)
T PRK12921 81 LDA-AIPDLKPLVGEDTVIIPLQNGIGHLETL 111 (306)
T ss_pred HHH-HHHHHHHHCCCCCEEEEECCCCCHHHHH
T ss_conf 799-9999986339994899934877538899
No 86
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.33 E-value=0.0023 Score=39.98 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=51.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCH--HHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 7817997377489999999984799089971998999999976992999789998--99984893146799993599689
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATIT--KILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~--~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
...|+|+|.|.+|..+++.|+++|+.+.+++.|...-+..+.....+ .|+ +........++|.+|++++=...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv-----~d~~~~~~~~~~~~~aDlVivavPi~~~ 77 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGV-----IDELTVAGLAEAAAEADLVIVAVPIEAT 77 (279)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCC-----CHHHCCCHHHHHCCCCCEEEEECCHHHH
T ss_conf 64899987746779999999976984799724774677877663585-----3010011555413569989995778899
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780924|r 526 AAYITQEAR 534 (609)
Q Consensus 526 n~~~~~~~~ 534 (609)
.-.+...+.
T Consensus 78 ~~~l~~l~~ 86 (279)
T COG0287 78 EEVLKELAP 86 (279)
T ss_pred HHHHHHHCC
T ss_conf 999998630
No 87
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.31 E-value=0.0029 Score=39.29 Aligned_cols=95 Identities=13% Similarity=0.195 Sum_probs=63.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEE-CCCCCHH------HHHHCCHHHCCEEEEECCC
Q ss_conf 17997377489999999984799089971998999999976992999-7899989------9984893146799993599
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIY-GNATITK------ILLMANIEKARSLVVSIST 522 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~-gd~~~~~------~l~~~~i~~a~~vi~~~~~ 522 (609)
.|-|+|.|.+|..+|..|.+++++|.+...|++.++..++...+.-| -+..=++ -+++ -++++|.++.+++.
T Consensus 3 kI~ViGaGawGtAlA~~la~n~~~V~lw~r~~~~~~~In~~~~n~~ylp~i~L~~nI~~t~dl~~-~l~~ad~iiiavPs 81 (325)
T PRK00094 3 KIAVLGAGSWGTALAILLARNGHDVVLWGRDPEHAAEINTDRENPRYLPGIKLPDNLRATSDLAE-ALADADLILVAVPS 81 (325)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHH-HHHCCCEEEEECCH
T ss_conf 89998989999999999997899789998389999999964988656897858998389789999-98379849994576
Q ss_pred HHHHHHHHHHHHHH-CCCCEEEEEE
Q ss_conf 68999999999995-8988089994
Q gi|254780924|r 523 AFEAAYITQEARNS-NPSILIIALA 546 (609)
Q Consensus 523 ~~~n~~~~~~~~~~-~~~~~iia~~ 546 (609)
....-..- ..++. .++..++.-+
T Consensus 82 ~~~~~~l~-~i~~~i~~~~~li~~t 105 (325)
T PRK00094 82 HAFREVLK-QLKPLLRPDAPIVWAT 105 (325)
T ss_pred HHHHHHHH-HHHHHCCCCCEEEEEE
T ss_conf 99999999-9986468997499976
No 88
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=97.31 E-value=0.006 Score=37.12 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=69.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC-CHHHCCEEEEECCCHHH
Q ss_conf 7817997377489999999984799-089971998999999976992999789998999848-93146799993599689
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA-NIEKARSLVVSISTAFE 525 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~-~i~~a~~vi~~~~~~~~ 525 (609)
.+.++|+|.|.+|...+..+...|. ++.++|.|+++.+.+++.|.+.+.-+....+..++. +-..+|.++-++++...
T Consensus 121 g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~~i~~~~~~~~~~~~~~g~g~D~vie~~G~~~~ 200 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAA 200 (280)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCEEEECCCCHHH
T ss_conf 99899990786899999999984998799991998999999973998983775779999997278887099987898899
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999958
Q gi|254780924|r 526 AAYITQEARNSN 537 (609)
Q Consensus 526 n~~~~~~~~~~~ 537 (609)
...+...+|..+
T Consensus 201 ~~~a~~~l~~gG 212 (280)
T TIGR03366 201 VRACLESLDVGG 212 (280)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999860498
No 89
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating); InterPro: IPR004849 This family resembles a larger family of bacterial and eukaryotic 6-phosphogluconate dehydrogenases (Gnd) but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain Gnd, and in Aquifex aeolicus. .
Probab=97.28 E-value=0.0031 Score=39.13 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=74.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH-HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHH
Q ss_conf 79973774899999999847990899719989999999-76992999789998999848931467999935996899999
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELR-SLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYI 529 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~-~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~ 529 (609)
+=.+|.||+|.+++++|.++||++++-|.|++.++++. ++... |=..-.|.++...--+.=++ ..|.-...-..
T Consensus 4 lglIGLGrMG~ni~~rl~~rgh~~vgYd~~q~av~~~kG~d~~~---gv~nl~E~~~~l~~Pr~vWv--MVPhgnivdaV 78 (341)
T TIGR00872 4 LGLIGLGRMGANIAKRLADRGHEVVGYDRDQAAVEELKGEDRAE---GVANLKELLKRLSAPRVVWV--MVPHGNIVDAV 78 (341)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCC---CCHHHHHHHHCCCCCCEEEE--ECCCCHHHHHH
T ss_conf 44313346789999998527946998538879999972011343---00124788841799958998--62873679999
Q ss_pred HHHHHHHCCCCEEEEEECCH------HHHHHHHHCCCCE
Q ss_conf 99999958988089994698------9999999769987
Q gi|254780924|r 530 TQEARNSNPSILIIALADSD------SEVEHLTRYGADT 562 (609)
Q Consensus 530 ~~~~~~~~~~~~iia~~~~~------~~~~~l~~~Ga~~ 562 (609)
.+.++-.-.+..+|.-.-|. ++.+.|++.|+++
T Consensus 79 l~~l~p~L~kGD~vIdgGNsyYkds~Rry~~lke~gih~ 117 (341)
T TIGR00872 79 LRELAPLLEKGDIVIDGGNSYYKDSLRRYKELKEKGIHY 117 (341)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 997666764088898278651233478887688718756
No 90
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.28 E-value=0.0015 Score=41.20 Aligned_cols=170 Identities=15% Similarity=0.189 Sum_probs=108.9
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHH--H---------HHHHHHHHHCCCCEEEE
Q ss_conf 210000001112221000012223333211122232134781799737748--9---------99999998479908997
Q gi|254780924|r 409 VTSSTEQYSHICVEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRI--G---------KVIVQNLKAAGIALLVI 477 (609)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii~G~g~~--g---------~~~~~~L~~~~~~v~vi 477 (609)
..+.-+.-..+..++...+.+-.-++.... +......++.|+|+|.|+. | .+.++.|++.|++.++|
T Consensus 517 i~P~yK~VDTcA~EF~a~T~Y~YsTY~~e~--e~~~~~~~~kvliLGsGP~RIGqgiEFDYc~vha~~aLr~~G~etImi 594 (1068)
T PRK12815 517 IRPSFKMVDTCAAEFEAKTPYYYSTYFGES--EAKIPSEKKKVLILGSGPIRIGQGIEFDYMCVHAAFALKKEGYETIMI 594 (1068)
T ss_pred CCEEEEECCCCCCCCCCCCCEEEEECCCCC--CCCCCCCCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 955898427745554678763776347867--776888983499956787142244240025899999999689748996
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCC-----CCEEEEEECCHHHH
Q ss_conf 1998999999976992999789998999848931467999935996899999999999589-----88089994698999
Q gi|254780924|r 478 EDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNP-----SILIIALADSDSEV 552 (609)
Q Consensus 478 d~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~-----~~~iia~~~~~~~~ 552 (609)
-.|||.+..--+...+.|+-..|-+++++-...++.+.+++..+--..+..+ ....+.+- ...-|-+++|++.-
T Consensus 595 N~NPETVSTDyD~sDrLYFEPlt~E~V~~I~~~E~p~gVivqfGGQt~lnla-~~L~~~gv~IlGts~~~Id~aEdR~~F 673 (1068)
T PRK12815 595 NNNPETVSTDYDTADRLYFEPITLEDILNVAEAENIKGVIVQFGGQTAINLA-KPLEEAGLPILGTSPDTIDRLEDRDRF 673 (1068)
T ss_pred CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHCCCEEECCCHHHHHHHHHHHHH
T ss_conf 2784312367455773575368799999999985899799964882367999-999976994982786886424139999
Q ss_pred H-HHHHCCCCE---EECHHHHHHHHHHHHHHHH
Q ss_conf 9-999769987---8765899999999998742
Q gi|254780924|r 553 E-HLTRYGADT---VVMSAREIALGMLDRLNQV 581 (609)
Q Consensus 553 ~-~l~~~Ga~~---vi~p~~~~a~~~~~~l~~~ 581 (609)
+ .+.+.|.+. -......-+.+.++.+..|
T Consensus 674 ~~ll~~l~i~~p~~~~~~~~~ea~~~a~~iGyP 706 (1068)
T PRK12815 674 YQLLDELGLPHVPGLTATSEEEALAFAKRIGYP 706 (1068)
T ss_pred HHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCC
T ss_conf 999997389999963545667999999864997
No 91
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.27 E-value=0.0033 Score=38.89 Aligned_cols=93 Identities=17% Similarity=0.307 Sum_probs=63.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 7817997377489999999984799-089971998999999976-99299978999899984893146799993599689
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
..+++|+|.|++|+.+++.|.++|. ++.+.-.+.++.+++.++ |.+++ +-+-+. ..+.++|.+|++|+.++-
T Consensus 178 ~~~vLviGaGem~~l~~~~L~~~g~~~i~v~nRt~~ra~~la~~~g~~~~-----~~~~l~-~~l~~~DvvisaT~s~~~ 251 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAV-----PLDELL-ELLNEADVVISATGAPHY 251 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEE-----CHHHHH-HHHHHCCEEEEECCCCCC
T ss_conf 16799986879999999999965998259976867899999997498997-----299999-999768999992799962
Q ss_pred HHHHHHHHHHHCCCCEEEEEE
Q ss_conf 999999999958988089994
Q gi|254780924|r 526 AAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 526 n~~~~~~~~~~~~~~~iia~~ 546 (609)
....-...+....+...+.=.
T Consensus 252 ~~~~~~~~~~~~~~~~~iiDL 272 (311)
T cd05213 252 AKIVERAMKKRSGKPRLIVDL 272 (311)
T ss_pred HHHHHHHHHHCCCCCEEEEEE
T ss_conf 035999975347997699991
No 92
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=97.27 E-value=0.0017 Score=40.95 Aligned_cols=180 Identities=14% Similarity=0.162 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCH--HHH---------HHHHHHH
Q ss_conf 99998754321000000111222100001222333321112223213478179973774--899---------9999998
Q gi|254780924|r 400 SFLVLRFARVTSSTEQYSHICVEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGR--IGK---------VIVQNLK 468 (609)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii~G~g~--~g~---------~~~~~L~ 468 (609)
-+-.++-..+.+.-++-..+..+++..|.+-.-++.+...-.....+.+.+++|+|.|+ +|+ +.+..|+
T Consensus 525 vR~~R~~~gi~Pv~K~vDTcAAEF~A~TpY~YSTY~~e~~d~~~~~~~Kk~~lvlGSGp~RIGqgvEFDYc~Vh~~~aLr 604 (1089)
T TIGR01369 525 VRKLRKELGIIPVYKRVDTCAAEFEAKTPYLYSTYEGERDDVEFTEKEKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALR 604 (1089)
T ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEECCCCEEEHHHHHHHHHHHH
T ss_conf 99999846974778775232120201568852577666567666657785689987845140663120567899999998
Q ss_pred HCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEE------
Q ss_conf 47990899719989999999769929997899989998489314679999359968999999999995898808------
Q gi|254780924|r 469 AAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILI------ 542 (609)
Q Consensus 469 ~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~i------ 542 (609)
+.|++..+|=.|||.|..--+--.+.||-..|-++++.=...++.+.||+-++---. +.++....+.+. ++|
T Consensus 605 ~~Gye~ImiN~NPETVSTDyD~sDrLYFEplt~E~Vm~I~e~E~~~GVIVq~GGQtp-~nlA~~L~~~GG-~~iLGTS~~ 682 (1089)
T TIGR01369 605 EAGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFGGQTP-LNLAKELEEAGG-VPILGTSPE 682 (1089)
T ss_pred HCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCEEHEEECCCCEEEEECCCHHH-HHHHHHHHHCCC-CEEECCCHH
T ss_conf 729959999778997436666510115876350310011000586679997487326-789999997089-317368857
Q ss_pred -EEEECCH-HHHHHHHHCCCCE---EECHHHHHHHHHHHHHHHH
Q ss_conf -9994698-9999999769987---8765899999999998742
Q gi|254780924|r 543 -IALADSD-SEVEHLTRYGADT---VVMSAREIALGMLDRLNQV 581 (609)
Q Consensus 543 -ia~~~~~-~~~~~l~~~Ga~~---vi~p~~~~a~~~~~~l~~~ 581 (609)
|=+++|| ...+.|+++|+++ -.-...+-+.+.++.+..|
T Consensus 683 ~ID~AEDR~kFs~~l~~Lgi~QP~~~~a~s~eea~~~A~~iGYP 726 (1089)
T TIGR01369 683 SIDRAEDREKFSELLDELGIPQPEWKIATSVEEAKEFASEIGYP 726 (1089)
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCC
T ss_conf 87513186799999971587989885272879999998546992
No 93
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.25 E-value=0.0005 Score=44.57 Aligned_cols=67 Identities=25% Similarity=0.326 Sum_probs=54.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH
Q ss_conf 7817997377489999999984799089971998999999976992999789998999848931467999935996
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA 523 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~ 523 (609)
-..++|||||..|+-+|+.++..|-+|.|.|-||-+.-++..+|+++.-- .+ -+..+|.+|.+|++.
T Consensus 208 GK~vVV~GYG~~GkG~A~~arg~GA~ViVtEvDPi~ALeA~mDGf~V~~~----~~-----a~~~~DifiT~TG~~ 274 (427)
T PRK05476 208 GKVVVVAGYGDVGKGSAQRLRGLGARVIVTEIDPICALQAAMDGFEVMTM----EE-----AAEKADIFVTATGNK 274 (427)
T ss_pred CCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCH----HH-----HHHHCCEEEEECCCC
T ss_conf 73799955665560089987418987999804737999988627835658----99-----862089999904895
No 94
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=97.23 E-value=0.0022 Score=40.19 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=56.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC--CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHH
Q ss_conf 7817997377489999999984799-089971998999999976--9929997899989998489314679999359968
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL--GIDVIYGNATITKILLMANIEKARSLVVSISTAF 524 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~--g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~ 524 (609)
..+++|+|.|.+|+.+++.|.++|. ++.+.-.+.++.+++.++ +..+-.-+..+ +. ..+.++|.+|.+|+.++
T Consensus 12 ~~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~---l~-~~l~~~DivI~aT~s~~ 87 (134)
T pfam01488 12 GKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEALPLDE---LE-ELLAEADIVISATSAPT 87 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECHH---HH-HHHHHCCEEEEECCCCC
T ss_conf 898999996099999999999759988999547578999999984997258985135---44-13631999999259997
Q ss_pred H
Q ss_conf 9
Q gi|254780924|r 525 E 525 (609)
Q Consensus 525 ~ 525 (609)
-
T Consensus 88 ~ 88 (134)
T pfam01488 88 P 88 (134)
T ss_pred C
T ss_conf 3
No 95
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.23 E-value=0.005 Score=37.70 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=63.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC-CHHHCCEEEEECCCHHH
Q ss_conf 7817997377489999999984799-089971998999999976992999789998999848-93146799993599689
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA-NIEKARSLVVSISTAFE 525 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~-~i~~a~~vi~~~~~~~~ 525 (609)
.+.++|+|.|.+|...+..+...|. ++.++|.|+++.+.+++.|.+.+. |..+++.-+.. .-...|.++-+++++..
T Consensus 170 g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~~i-~~~~~~~~~~~~~~g~~Dvvie~~G~~~~ 248 (343)
T PRK09880 170 GKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPRSLSLARQMGADVLV-NPQNDDMDHWKAEKGYFDVSFEVSGHPSS 248 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEE-CCCCCCHHHHHHHCCCCCEEEEECCCHHH
T ss_conf 98899984776799999999986998799997978999999972997998-79874399999636997789992199999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780924|r 526 AAYITQEARN 535 (609)
Q Consensus 526 n~~~~~~~~~ 535 (609)
-..+...+|.
T Consensus 249 ~~~al~~~r~ 258 (343)
T PRK09880 249 VNTCLEVTRA 258 (343)
T ss_pred HHHHHHHCCC
T ss_conf 9999973779
No 96
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=97.19 E-value=0.00077 Score=43.27 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=54.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH
Q ss_conf 7817997377489999999984799089971998999999976992999789998999848931467999935996
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA 523 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~ 523 (609)
...++|||||-.|+-+|+.++..|-.|.|.|-||-+.-++..+|+++.-- .+ -+..+|.+|.+|++.
T Consensus 210 GK~vVV~GYG~cGkG~A~r~rglGA~V~VtEvDPi~ALeA~mDGf~V~~m----~e-----aa~~~DifvT~TG~~ 276 (430)
T pfam05221 210 GKVAVVCGYGDVGKGCAASLRGQGARVIVTEIDPICALQAAMEGYQVVTL----EE-----VVKDADIFVTTTGCV 276 (430)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCH----HH-----HHHHCCEEEEECCCC
T ss_conf 76799955675357899998427988999547858999998558845779----99-----985599999936988
No 97
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.19 E-value=0.016 Score=34.12 Aligned_cols=273 Identities=16% Similarity=0.112 Sum_probs=132.5
Q ss_pred HHHHCCCCHH-HHHHHHHHHHCCHHCCCCCCHHHHHH-HHHHHHHHHHH-HHHHCCCHHHHHHHCCHHHHHHHHHHHHH-
Q ss_conf 9987088867-99999999627410385584789999-99999999998-82541688999841515889989999999-
Q gi|254780924|r 17 IANRCRLPTL-IGYLVAGILVGPRTPGFVASQSLVPA-LAEIGIILLMF-GVGLHFSVKDLISVRGIALPGALIQIILG- 92 (609)
Q Consensus 17 la~rl~lP~i-~~~il~GillGp~~l~~i~~~~~l~~-l~~lgl~~llF-~~Gleld~~~l~~~~~~~~~~~~~~~~~~- 92 (609)
+.+|+-+|.- +|=++ ..+++|-+.+...-+-..+. +-+. ++.+.| ..|+.-+++.+|+-+|...........+.
T Consensus 30 fl~k~~IPepVvgG~i-~a~l~~~~~~~~~~~~~fd~~l~~~-fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~ 107 (404)
T COG0786 30 FLKKYCIPEPVVGGLI-FAILLLLLHGFGGVSLNFDTSLQDV-FMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAV 107 (404)
T ss_pred HHHHCCCCCCHHHHHH-HHHHHHHHHHCCEEEEECCCCCCCH-HHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 9988079850387799-9999999976035998677654359-9999999702103616788567448999999999999
Q ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf --9999999999678868999999999742--3899-9987656554114405789899877778999999999986134
Q gi|254780924|r 93 --TALGALMGMVMGWSLGGSVVFGLALSIA--STVV-LLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATN 167 (609)
Q Consensus 93 --~~~~~~~~~~lg~~~~~all~g~~l~~t--s~~v-v~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~ 167 (609)
-.++...+.++|.++..+++.|.+--.. +|+. -.+...+.+..+. .....+.+
T Consensus 108 ~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~~f~~~G~~~A--~~va~A~A-------------------- 165 (404)
T COG0786 108 LQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGPTFEDLGAEGA--TEVAMASA-------------------- 165 (404)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCCCH--HHHHHHHH--------------------
T ss_conf 98779999999748547889872561104778417887788985699626--89999999--------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH------------------HHHHCCC
Q ss_conf 4433013567899998876532101479999999841010000100034454387------------------7642035
Q gi|254780924|r 168 YSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWI------------------LHMIFYT 229 (609)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~ 229 (609)
-+..+..........||+..+. .+.....
T Consensus 166 ---------------------------------TfGlv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (404)
T COG0786 166 ---------------------------------TFGLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKST 212 (404)
T ss_pred ---------------------------------HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHCCCCC
T ss_conf ---------------------------------89888767507288999999569899988772232001554222100
Q ss_pred --CCHH--HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf --6736--8999999999999998887411-----00246666642220276145----689999976689999999988
Q gi|254780924|r 230 --GSRE--LFRLGVLAIALGFAYGSSKLFG-----VSLSLGAFFAGMILAESELS----QSAAQESLPLRDAFSVLFFIS 296 (609)
Q Consensus 230 --~~~~--~~~~~~l~~~~~~~~~~~~~~g-----~s~~lgaf~aG~~l~~~~~~----~~~~~~~~~~~~~~~~~fFv~ 296 (609)
...| ......+.++..+.+...++.+ ++....++..|+++.|...+ +-..+..+.+.+.-..+|-.+
T Consensus 213 ~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflam 292 (404)
T COG0786 213 RLITAEPLIETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAM 292 (404)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 40008889999999999999999999998633524447999999999998799883756455888878746789999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 653114798862025677776555-42212232110002558799999986
Q gi|254780924|r 297 VGMMFNPDILISNPILLMMAVIIV-IIGKALIAFIVVIAFGRSVATALTIA 346 (609)
Q Consensus 297 iG~~l~~~~l~~~~~~~l~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~~g 346 (609)
.=|++.+..+...+...++.+.+. ++.-....+...+..+.++..+...+
T Consensus 293 ALmSlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~ 343 (404)
T COG0786 293 ALMSLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAA 343 (404)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 999899999973164178999999999999999998987471453898842
No 98
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.18 E-value=0.015 Score=34.43 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=58.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 7817997377489999999984799-089971998999999976-99299978999899984893146799993599689
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
..+++|+|.|.+|+.+++.|.++|. ++.+.-.+.++.+.+.++ |.. +.+-+-+.+ .++++|.+|++|+.++-
T Consensus 182 ~~~vlviGaGem~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~~~~-----~~~~~~l~~-~l~~~DvvisaT~s~~~ 255 (429)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGAE-----AIPLEELPE-ALAEADIVISSTAAPHP 255 (429)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCE-----EECHHHHHH-HHHHCCEEEEECCCCCC
T ss_conf 065999767489999999998559984999758677899999975988-----974999999-99658999994489975
Q ss_pred H
Q ss_conf 9
Q gi|254780924|r 526 A 526 (609)
Q Consensus 526 n 526 (609)
-
T Consensus 256 i 256 (429)
T PRK00045 256 I 256 (429)
T ss_pred C
T ss_conf 0
No 99
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=97.17 E-value=0.0047 Score=37.85 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=67.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECC-CCCHHHHHHCCHHHCCEEEEEC---CC
Q ss_conf 4781799737748999999998479908997199899999997699299978-9998999848931467999935---99
Q gi|254780924|r 447 LCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGN-ATITKILLMANIEKARSLVVSI---ST 522 (609)
Q Consensus 447 ~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd-~~~~~~l~~~~i~~a~~vi~~~---~~ 522 (609)
-..+++|.|.|..|++.++.....|.+|.++|.|+++.+++++.+-.-+.-+ ..+++.+++ .+.++|.+|.+. +.
T Consensus 19 ~pa~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~~~l~~~~~~~~~~v~~~~~~~~~~l~~-~i~~aDvvIgavl~pg~ 97 (150)
T pfam01262 19 PPAKVVVIGGGVVGLGAAATAKGLGAPVTILDVRPERLEQLDSLFAEFVETDIFSNCEYLAE-AIAEADLVIGTVLIPGA 97 (150)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHH-HHHHCCEEEEEEECCCC
T ss_conf 67779998987899999999986799899972999999999986476200166537999999-97438799972031788
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 689999999999958988
Q gi|254780924|r 523 AFEAAYITQEARNSNPSI 540 (609)
Q Consensus 523 ~~~n~~~~~~~~~~~~~~ 540 (609)
..--+..-..++++.|..
T Consensus 98 ~aP~lIt~~mv~~MkpGs 115 (150)
T pfam01262 98 RAPKLVTREMVKTMKPGS 115 (150)
T ss_pred CCCCEECHHHHHHHCCCC
T ss_conf 699220799998447993
No 100
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.13 E-value=0.0069 Score=36.73 Aligned_cols=81 Identities=12% Similarity=0.217 Sum_probs=60.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCC-EEECCCCCHHHHHH-----CCHHHCCEEEEECCCH
Q ss_conf 17997377489999999984799089971998999999976992-99978999899984-----8931467999935996
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGID-VIYGNATITKILLM-----ANIEKARSLVVSISTA 523 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~-~~~gd~~~~~~l~~-----~~i~~a~~vi~~~~~~ 523 (609)
+|-|+|.|-+|..++..|.++|++|++-..|++.++++.+...+ -|..+..-|+.++. .-++++|.++.+++..
T Consensus 3 kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs~ 82 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPSQ 82 (329)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCHH
T ss_conf 18998178379999999996698469996289999999734767010599628863222468999972299999978757
Q ss_pred HHHHHHH
Q ss_conf 8999999
Q gi|254780924|r 524 FEAAYIT 530 (609)
Q Consensus 524 ~~n~~~~ 530 (609)
..-..+.
T Consensus 83 ~~r~v~~ 89 (329)
T COG0240 83 ALREVLR 89 (329)
T ss_pred HHHHHHH
T ss_conf 8999999
No 101
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.10 E-value=0.01 Score=35.62 Aligned_cols=58 Identities=17% Similarity=0.027 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 899999999847-9908997199899999997699299978999899984893146799993599689
Q gi|254780924|r 459 IGKVIVQNLKAA-GIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 459 ~g~~~~~~L~~~-~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
-+..+++.|.++ +.++.+.|..-+..+...... ..+- + +++ .++++|.++++|+.++=
T Consensus 341 ps~~ii~~L~~~~~a~v~~~DP~v~~~~~~~~~~--~~~~---~---~~~-~~~~aD~vii~T~h~eF 399 (415)
T PRK11064 341 PAMEIAQLIAQWHSGETLVVEPNIHQLPKKLDGL--VTLA---S---LDE-ALATADVLVMLVDHSQF 399 (415)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCC--CEEC---C---HHH-HHHCCCEEEEECCCHHH
T ss_conf 5999999999738983999899887335763387--1336---7---999-98279999992498666
No 102
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=97.09 E-value=0.0016 Score=41.15 Aligned_cols=108 Identities=14% Similarity=0.151 Sum_probs=78.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
Q ss_conf 81799737748999999998479908997199899999997699299978999899984893146799993599689999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~ 528 (609)
..|-|+|.|+.|+-++..-.+.|+++.+.|.|++.. +..-....+.||.+|++.+++. ++++|.+- .+.+..+..
T Consensus 8 ~tIGIlGgGQLgrMla~aA~~lG~~v~vldp~~~~P--A~~va~~~~~~~~~D~~al~~f-a~~~DviT--~E~EnI~~~ 82 (377)
T PRK06019 8 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDADCP--AAQVADRVIVADYDDVAALREL-AEQCDVIT--YEFENVPAE 82 (377)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC--HHHHCCEEEECCCCCHHHHHHH-HHCCCEEE--ECCCCCCHH
T ss_conf 999998786899999999997899899984898498--4783784898688989999999-84599999--781768999
Q ss_pred HHHHHHH---HCCCCEEEEEECCHHHH-HHHHHCCCC
Q ss_conf 9999999---58988089994698999-999976998
Q gi|254780924|r 529 ITQEARN---SNPSILIIALADSDSEV-EHLTRYGAD 561 (609)
Q Consensus 529 ~~~~~~~---~~~~~~iia~~~~~~~~-~~l~~~Ga~ 561 (609)
+...+.+ ..|..+.+..+.|+... +.+.+.|+.
T Consensus 83 ~L~~le~~~~v~P~~~al~i~QdR~~eK~~l~~lgip 119 (377)
T PRK06019 83 ALDLLAARVPVPPGPDALAIAQDRLTEKQFLDELGIP 119 (377)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999970896687989999886279999999976999
No 103
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=97.08 E-value=0.021 Score=33.40 Aligned_cols=99 Identities=18% Similarity=0.343 Sum_probs=66.1
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEE-EECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 179973774899999999847--99089-971998999999976-99299978999899984893146799993599689
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAA--GIALL-VIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~--~~~v~-vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
++-|+|+|++|+.-.+.+.+. +.+++ +.|.|+++.+...+. +.+.+ .| -++.++. ++.|.++++++++..
T Consensus 2 ki~iiG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~-~~--~~~~l~~---~~iD~v~I~tp~~~H 75 (120)
T pfam01408 2 RVGIVGAGKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAESFGVPAY-SD--LEELLAD---PDVDAVSVATPPGLH 75 (120)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCEE-CC--HHHHHHC---CCCCEEEECCCHHHH
T ss_conf 89999077999999999985599978999982999999999998399678-86--9999737---788989990874618
Q ss_pred HHHHHHHHHHHCCCCEEEE---EECCHHHHHHHHH
Q ss_conf 9999999999589880899---9469899999997
Q gi|254780924|r 526 AAYITQEARNSNPSILIIA---LADSDSEVEHLTR 557 (609)
Q Consensus 526 n~~~~~~~~~~~~~~~iia---~~~~~~~~~~l~~ 557 (609)
--.+...+ +.+ .++++ -+.+.++.+.+.+
T Consensus 76 ~~~~~~~l-~~g--~~v~~EKP~~~~~~e~~~l~~ 107 (120)
T pfam01408 76 FELALAAL-EAG--KHVLVEKPLATTVEEAKELVE 107 (120)
T ss_pred HHHHHHHH-HHC--CEEEEECCCCCCHHHHHHHHH
T ss_conf 99999999-819--989996898199999999999
No 104
>PRK11728 hypothetical protein; Provisional
Probab=97.06 E-value=0.0029 Score=39.29 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=15.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHH
Q ss_conf 34781799737748999999998
Q gi|254780924|r 446 DLCDHVILVGYGRIGKVIVQNLK 468 (609)
Q Consensus 446 ~~~~~vii~G~g~~g~~~~~~L~ 468 (609)
+.+-.++|--.|-.+..+|+..-
T Consensus 191 ~i~a~~vINaAGl~Ad~IA~~~G 213 (400)
T PRK11728 191 EFEARTLVNCAGLMSDRLAKMLG 213 (400)
T ss_pred EEEEEEEEECCCHHHHHHHHHCC
T ss_conf 89971899866652899999709
No 105
>TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process.
Probab=97.06 E-value=0.0012 Score=41.85 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
Q ss_conf 81799737748999999998479908997199899999997699299978999899984893146799993599689999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~ 528 (609)
..++|||||-.|+-+|..++..|-+|+|.|-||=+.-+++.+|++|..= ++ -.+..|.+|.+|+|.+ +.
T Consensus 212 k~vVVaGYGw~G~G~A~r~~G~GA~V~VtEvdPi~ALeA~MdGF~V~~m----~e-----A~~~gdifiT~TG~~~--vI 280 (422)
T TIGR00936 212 KTVVVAGYGWCGKGIAMRARGLGARVIVTEVDPIRALEAAMDGFRVMTM----EE-----AAKIGDIFITATGNKD--VI 280 (422)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCEEEEH----HH-----HHHHCCEEEECCCCCH--HC
T ss_conf 8789970386307899985059977999820733688731478334117----88-----7550988998158801--03
Q ss_pred HHHHHHHHCCCCEEEEEE
Q ss_conf 999999958988089994
Q gi|254780924|r 529 ITQEARNSNPSILIIALA 546 (609)
Q Consensus 529 ~~~~~~~~~~~~~iia~~ 546 (609)
--.+.+..- +.-|++-+
T Consensus 281 ~~~h~~~Mk-dgAI~aN~ 297 (422)
T TIGR00936 281 REEHFEKMK-DGAILANA 297 (422)
T ss_pred CHHHHHHCC-CCCEEECC
T ss_conf 648885066-77288535
No 106
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=97.06 E-value=0.0098 Score=35.67 Aligned_cols=86 Identities=17% Similarity=0.306 Sum_probs=58.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEE-ECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
Q ss_conf 79973774899999999847990899-71998999999976-99299978999899984893146799993599689999
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGIALLV-IEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~~v~v-id~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~ 528 (609)
+-++|+|.+|+.+++.|.+.|++++. .+.|+++.+++.++ +..+...| +.+ -++++|.++.++.......
T Consensus 2 Ig~IG~G~mg~ai~~~l~~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~DvIilavkp~~~~~- 73 (93)
T pfam03807 2 IGIIGAGNMGEALARGLAAAGHEVIIANSRNPEKAAALAEELGVGATAVS--NEE-----AAEEADVVILAVKPEDAPE- 73 (93)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCC--HHH-----HHHCCCEEEEEECHHHHHH-
T ss_conf 89997009999999999977996127864878999999998199764589--999-----9744998999979999999-
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999999589880899
Q gi|254780924|r 529 ITQEARNSNPSILIIA 544 (609)
Q Consensus 529 ~~~~~~~~~~~~~iia 544 (609)
++...+...++..+|.
T Consensus 74 vl~~i~~~~~~k~vIS 89 (93)
T pfam03807 74 VLAELADLLKGKLVIS 89 (93)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9998762508999998
No 107
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.05 E-value=0.0033 Score=38.98 Aligned_cols=163 Identities=13% Similarity=0.163 Sum_probs=103.3
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHH-----------HHHHHHHHHHCCCCEEEECCCH
Q ss_conf 00001112221000012223333211122232134781799737748-----------9999999984799089971998
Q gi|254780924|r 413 TEQYSHICVEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRI-----------GKVIVQNLKAAGIALLVIEDSE 481 (609)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii~G~g~~-----------g~~~~~~L~~~~~~v~vid~~~ 481 (609)
-+.-..+..++...+.+-.-+... ..+..+..++.++|+|.|+. +.+.++.|++.|++.++|-.||
T Consensus 521 yK~VDTcAgEF~a~T~Y~YSTY~~---e~e~~~~~~~kvlvlGsGp~rIGqgiEFDY~~v~a~~alk~~G~~~imIN~NP 597 (1063)
T PRK05294 521 YKRVDTCAAEFEADTPYMYSTYEE---ECESNPSDRKKVMILGGGPNRIGQGIEFDYCCVHAALALREAGYETIMVNCNP 597 (1063)
T ss_pred EEECCCCCCCCCCCCCEEEEECCC---CCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 984156323456678726764577---77767778863799657773204442300679999999996598158953781
Q ss_pred HHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEE-------EEECCHH-HHH
Q ss_conf 99999997699299978999899984893146799993599689999999999958988089-------9946989-999
Q gi|254780924|r 482 KKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILII-------ALADSDS-EVE 553 (609)
Q Consensus 482 ~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~ii-------a~~~~~~-~~~ 553 (609)
|.+..-.+...+.|+-..|-+++++-...++.+.+++..+--. .+.++....+.+ .+|+ -+++|++ ..+
T Consensus 598 ETVSTD~d~sDrLYFEplt~E~V~~I~~~E~p~gvi~qfGGQt-~~nla~~L~~~g--~~ilGts~~~Id~aEDR~~F~~ 674 (1063)
T PRK05294 598 ETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQFGGQT-PLKLAKALEAAG--VPILGTSPDAIDLAEDRERFQK 674 (1063)
T ss_pred CCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHHCC--CCEECCCHHHHHHHHHHHHHHH
T ss_conf 1111565667614543688999999999758987999738836-789999999879--9477788788787875888999
Q ss_pred HHHHCCCCEE---ECHHHHHHHHHHHHHHHH
Q ss_conf 9997699878---765899999999998742
Q gi|254780924|r 554 HLTRYGADTV---VMSAREIALGMLDRLNQV 581 (609)
Q Consensus 554 ~l~~~Ga~~v---i~p~~~~a~~~~~~l~~~ 581 (609)
.+++.|++.. ......-+.+.++.+..|
T Consensus 675 ~l~~l~i~qp~~~~a~s~~ea~~~a~~iGyP 705 (1063)
T PRK05294 675 LLEKLGIKQPPNGTATSVEEALEIAEEIGYP 705 (1063)
T ss_pred HHHHCCCCCCCCCEECCHHHHHHHHHHCCCC
T ss_conf 9986599999970766899999999864986
No 108
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=97.05 E-value=0.0066 Score=36.86 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=78.6
Q ss_pred CCCCEEEECCCH-HHHHHHHHHHH-CCCCEEEECCCHHHHHHHHH-CCCCEEECCCCCHHHHHHCCHHHCCEEEEEC---
Q ss_conf 478179973774-89999999984-79908997199899999997-6992999789998999848931467999935---
Q gi|254780924|r 447 LCDHVILVGYGR-IGKVIVQNLKA-AGIALLVIEDSEKKIEELRS-LGIDVIYGNATITKILLMANIEKARSLVVSI--- 520 (609)
Q Consensus 447 ~~~~vii~G~g~-~g~~~~~~L~~-~~~~v~vid~~~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~--- 520 (609)
.+.+|+|.|.|. +|.++.+.|.+ .++++..+|-..+++++..+ ...+.+.||.+-..-|-+.++.++|.++-..
T Consensus 314 ~~~~vlilgvngfig~hl~~~~l~~~~~~v~g~d~~~~~i~~~~~~p~~~f~~gdi~~~~~wie~~ikkcdvvlplvaia 393 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIA 393 (660)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEHHHC
T ss_conf 52279998344136789999985038858998865753455753499548881561466899998875457673205534
Q ss_pred -C-------------CHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf -9-------------9689999999999958988089994
Q gi|254780924|r 521 -S-------------TAFEAAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 521 -~-------------~~~~n~~~~~~~~~~~~~~~iia~~ 546 (609)
+ |-|+|+.++...-+++ + +||=-.
T Consensus 394 tp~~y~~~pl~vfeldfe~nl~ivr~c~ky~-k-riifps 431 (660)
T PRK08125 394 TPIEYTRNPLRVFELDFEENLKIIRYCVKYR-K-RIIFPS 431 (660)
T ss_pred CHHHHHCCCCEEEEECHHHCCHHHHHHHHHC-C-EEEECC
T ss_conf 7477634860478732675528999999748-7-789656
No 109
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=97.04 E-value=0.0037 Score=38.63 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=60.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHC-CC-CEEECCCCCHHHHHHCCHHHCCEEEEECCCH
Q ss_conf 781799737748999999998479-9089971998999999976-99-2999789998999848931467999935996
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAG-IALLVIEDSEKKIEELRSL-GI-DVIYGNATITKILLMANIEKARSLVVSISTA 523 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~-~~v~vid~~~~~~~~~~~~-g~-~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~ 523 (609)
..+++++|.|.+|.-+++.|.++| .++.++-.+.++.+++.++ +- ..+.-|+.--+-|++ -+.++|.||++|+.+
T Consensus 185 ~~~~LliGAGeMg~Lva~~L~~~~v~~~~i~NRt~~rA~~LA~e~~~P~~~~f~~La~~~L~~-~L~~~DivissTgA~ 262 (436)
T TIGR01035 185 GKKVLLIGAGEMGELVAKHLREKGVGKVLIANRTYERAEKLAKELGGPEAVKFEALALEKLEE-ALAEADIVISSTGAP 262 (436)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-HHHHCCEEEEECCCC
T ss_conf 641899827457999999996489528988556778999999870786645444554899999-974288999855765
No 110
>PRK08017 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.0042 Score=38.21 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=52.3
Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC
Q ss_conf 781799737-7489999999984799089971998999999976992999789998999848
Q gi|254780924|r 448 CDHVILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA 508 (609)
Q Consensus 448 ~~~vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~ 508 (609)
+..++|-|. +.+|+.++++|.++|++|.+.+.+++.++++.+.+.+.+..|.+|++..+++
T Consensus 2 ~K~vlITGassGIG~a~A~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 63 (256)
T PRK08017 2 QKSVLITGCSSGIGLESALELKRQGFRVLAGCRKPDDVARMNSMGFTGVLIDLDSPESVDRA 63 (256)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCHHHHHHH
T ss_conf 97899965876899999999998799999996998999999856994699835898999999
No 111
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.03 E-value=0.0093 Score=35.83 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC---CC--CEEECCCCCHH---HHHH-------CCHHHC
Q ss_conf 817997377489999999984799089971998999999976---99--29997899989---9984-------893146
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL---GI--DVIYGNATITK---ILLM-------ANIEKA 513 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~---g~--~~~~gd~~~~~---~l~~-------~~i~~a 513 (609)
++|-|+|.|.+|+.+|..+...|++|++.|.|++..++..+. .. .+-.|-.++.+ .+.+ ..+.++
T Consensus 4 ~~VaViGaG~mG~~IA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~a 83 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKDA 83 (282)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 68999897889999999999579938999799899999999999999999970886426699999526366888896759
Q ss_pred CEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 7999935996-89999999999958988089994698
Q gi|254780924|r 514 RSLVVSISTA-FEAAYITQEARNSNPSILIIALADSD 549 (609)
Q Consensus 514 ~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~~ 549 (609)
|.|+=+...+ +.-..+-....+..++-.|++..++.
T Consensus 84 DlViEav~E~l~iK~~vf~~le~~~~~~~IlaSnTSs 120 (282)
T PRK05808 84 DLVIEAAVENMDIKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 9999877563455699999999557998489975887
No 112
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.03 E-value=0.0074 Score=36.51 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=64.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEE--CCCCCHHHH------HHCCHHHCCEEEE
Q ss_conf 47817997377489999999984799089971998999999976992999--789998999------8489314679999
Q gi|254780924|r 447 LCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIY--GNATITKIL------LMANIEKARSLVV 518 (609)
Q Consensus 447 ~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~--gd~~~~~~l------~~~~i~~a~~vi~ 518 (609)
...+|.|+|.|.+|..+|..|.++++.+. ...|++.++...+...+.-| +|..-++-+ ++ -++++|.++.
T Consensus 5 k~~KI~ViGaGawGTALA~~la~n~~~v~-w~r~~~~~~~In~~~~N~kyL~~~i~Lp~~i~~t~dl~~-a~~~adiii~ 82 (340)
T PRK12439 5 REPKVVVLGGGSWGTTVASICARRGPTLQ-WVRSEETAKDINDNHRNSRYLGNDVVLSDTLRATTDFTE-AANCADVVVM 82 (340)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHH-HHHCCCEEEE
T ss_conf 89928998969999999999995899899-968999999999828887689987558987289789999-9826998999
Q ss_pred ECCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 3599689999999999958988089994
Q gi|254780924|r 519 SISTAFEAAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 519 ~~~~~~~n~~~~~~~~~~~~~~~iia~~ 546 (609)
+++.....-..-+..+...++..++.-+
T Consensus 83 avPS~~~r~~~~~l~~~l~~~~~iv~~s 110 (340)
T PRK12439 83 GVPSHGFRGVLTELAKELRPWVPVVSLV 110 (340)
T ss_pred ECCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 3680899999999986557887599732
No 113
>PRK06483 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.0042 Score=38.18 Aligned_cols=72 Identities=24% Similarity=0.410 Sum_probs=55.3
Q ss_pred CCCEEEECCC-HHHHHHHHHHHHCCCCEEEECCCH-HHHHHHHHCCCCEEECCCCCHHHHHHC------CHHHCCEEEEE
Q ss_conf 7817997377-489999999984799089971998-999999976992999789998999848------93146799993
Q gi|254780924|r 448 CDHVILVGYG-RIGKVIVQNLKAAGIALLVIEDSE-KKIEELRSLGIDVIYGNATITKILLMA------NIEKARSLVVS 519 (609)
Q Consensus 448 ~~~vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~-~~~~~~~~~g~~~~~gd~~~~~~l~~~------~i~~a~~vi~~ 519 (609)
+..|+|-|.+ .+|+.+++.|.++|.+|++.+.++ +..+++++.+...+.+|.+|++-.+++ ...+.|.+|..
T Consensus 2 ~ktVlVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~l~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lVnN 81 (236)
T PRK06483 2 SAPILITGAGQRIGLALAKHLLAQGQPVIVSYRSHYPAIDELRQAGATCIQADFSTNAGIMAFIDELKQHTDGLRAIIHN 81 (236)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 98799978998899999999998899899995984799999985699899922799999999999999983997599977
No 114
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.03 E-value=0.00066 Score=43.77 Aligned_cols=14 Identities=0% Similarity=0.107 Sum_probs=6.0
Q ss_pred EEECCCHHHHHHHH
Q ss_conf 99737748999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQ 465 (609)
Q Consensus 452 ii~G~g~~g~~~~~ 465 (609)
+++|++-.-..+-+
T Consensus 160 lvVgaDG~~S~vR~ 173 (392)
T PRK08773 160 LAIAADGAASTLRE 173 (392)
T ss_pred EEEECCCCCCHHHH
T ss_conf 99983788747677
No 115
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.02 E-value=0.012 Score=35.05 Aligned_cols=85 Identities=25% Similarity=0.323 Sum_probs=64.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 78179973774899999999847990899719989999999769929997899989998489314679999359968999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
-+.|.|.|.|-.|....+.....|.+|+++|.++++.+.+++.|.+.+.-.. |++..++..-. +|.++.+.+ +.+-.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~~-~d~ii~tv~-~~~~~ 243 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKEI-ADAIIDTVG-PATLE 243 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEECC-CCHHHHHHHHH-CCEEEECCC-HHHHH
T ss_conf 9899998774899999999998699699995787799999984882899767-81166776734-739999877-45599
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780924|r 528 YITQEARN 535 (609)
Q Consensus 528 ~~~~~~~~ 535 (609)
.....+|.
T Consensus 244 ~~l~~l~~ 251 (339)
T COG1064 244 PSLKALRR 251 (339)
T ss_pred HHHHHHHC
T ss_conf 99998642
No 116
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.02 E-value=0.009 Score=35.93 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=65.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC------CC--CEEECCCCCHHH---HHH-------CCH
Q ss_conf 817997377489999999984799089971998999999976------99--299978999899---984-------893
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL------GI--DVIYGNATITKI---LLM-------ANI 510 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~------g~--~~~~gd~~~~~~---l~~-------~~i 510 (609)
++|-|+|.|.+|+.+|..+...|++|++.|.|++..+++.+. +. .+-.|-.++.+. +.+ ..+
T Consensus 4 k~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 83 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYESL 83 (291)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 88999887688999999999589988999899899999999999718999999866899999999998366435888897
Q ss_pred HHCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 1467999935996-8999999999995898808999469899999
Q gi|254780924|r 511 EKARSLVVSISTA-FEAAYITQEARNSNPSILIIALADSDSEVEH 554 (609)
Q Consensus 511 ~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~~~~~~~ 554 (609)
.+||.|+=+..++ +.-..+-....+..+.-.|++..++.-....
T Consensus 84 ~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~is~ 128 (291)
T PRK06035 84 SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAE 128 (291)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf 659999988838899999999999965899837986088778699
No 117
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=97.00 E-value=0.0095 Score=35.75 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=63.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHH----CCHHHCCEEEEECCC
Q ss_conf 7817997377489999999984799-08997199899999997699299978999899984----893146799993599
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSLGIDVIYGNATITKILLM----ANIEKARSLVVSIST 522 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~----~~i~~a~~vi~~~~~ 522 (609)
.+.|+|.|.|.+|...+..+...|. +|.++|.|+++.+.+++.|.+... |..+.+..++ -+-..+|.++-++++
T Consensus 177 g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~~lGa~~~i-~~~~~~~~~~v~~~t~g~G~Dvvie~~G~ 255 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTV-NSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 98899967376999999999983991899991988999999965990997-39987889999998589887499999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 68999999999995
Q gi|254780924|r 523 AFEAAYITQEARNS 536 (609)
Q Consensus 523 ~~~n~~~~~~~~~~ 536 (609)
.+.-......+|..
T Consensus 256 ~~~~~~al~~~~~g 269 (358)
T TIGR03451 256 PETYKQAFYARDLA 269 (358)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 89999999976279
No 118
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=96.98 E-value=0.015 Score=34.47 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=28.0
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECC----CHH---HHHHHHHCCCCEEECCCCCHHHHHHC
Q ss_conf 799737-74899999999847990899719----989---99999976992999789998999848
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIED----SEK---KIEELRSLGIDVIYGNATITKILLMA 508 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~----~~~---~~~~~~~~g~~~~~gd~~~~~~l~~~ 508 (609)
|+|-|. |=+|+++++.|.++|++|+++|. .+. ..+++.....+.+.||.+|.+.++++
T Consensus 3 vLVTGg~GFIGs~l~~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~~~~~ 68 (338)
T PRK10675 3 VLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68 (338)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
T ss_conf 999898767999999999978498999988988737678888861478875998327998999999
No 119
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.96 E-value=0.0029 Score=39.29 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=60.5
Q ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEE-CCCHH-HHHHHHHCCCCEEECCCCCHHHHHHCCHH----------HCCEE
Q ss_conf 179973774899999999847-9908997-19989-99999976992999789998999848931----------46799
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAA-GIALLVI-EDSEK-KIEELRSLGIDVIYGNATITKILLMANIE----------KARSL 516 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~-~~~v~vi-d~~~~-~~~~~~~~g~~~~~gd~~~~~~l~~~~i~----------~a~~v 516 (609)
+|-|-|||++|+.+|+....+ +.+++.| +..|+ .+..+.++|++++..+....+.++++|++ ++|.|
T Consensus 4 kV~INGyGtIGkRVAdav~~q~DmelVGV~k~~pd~~a~~a~~kG~~vy~~~~~~~~~F~~aGi~v~Gtiedll~~aDvV 83 (338)
T PRK04207 4 KVAVNGYGTIGKRVADAVAAQDDMEVVGVSKTKPDYEARVAVERGYPLYVADPERLDAFEKAGIEVAGTIEDLLEKADIV 83 (338)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCCHHHHHHCCCEE
T ss_conf 99982486055899888735998189978679997789999986996785377666568756986667688975218999
Q ss_pred EEECCCH--HHHH
Q ss_conf 9935996--8999
Q gi|254780924|r 517 VVSISTA--FEAA 527 (609)
Q Consensus 517 i~~~~~~--~~n~ 527 (609)
+=||+.. ..|.
T Consensus 84 vDcTP~g~G~~Nk 96 (338)
T PRK04207 84 VDATPGGVGAKNK 96 (338)
T ss_pred EECCCCCCCCCCH
T ss_conf 9899976440022
No 120
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.95 E-value=0.012 Score=35.09 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=64.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCC-----CCEEECCCCCHHH----HH--------HCCHH
Q ss_conf 8179973774899999999847990899719989999999769-----9299978999899----98--------48931
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLG-----IDVIYGNATITKI----LL--------MANIE 511 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g-----~~~~~gd~~~~~~----l~--------~~~i~ 511 (609)
++|-|+|.|.+|+.+|..+...|++|++.|.|++..++..+.- ..+-.+-.++.+. +. +..++
T Consensus 4 ~~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a~~ 83 (288)
T PRK08293 4 KKVTVAGAGVLGSQIAFQTAFKGFDVTIYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRITFTTDLAQAVK 83 (288)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHC
T ss_conf 78999897889999999999579928999898899999999999999999970599917899999807730589899846
Q ss_pred HCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 467999935996-89999999999958988089994698
Q gi|254780924|r 512 KARSLVVSISTA-FEAAYITQEARNSNPSILIIALADSD 549 (609)
Q Consensus 512 ~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~~ 549 (609)
++|.|+=+...+ +.-..+-....+..+.-.|++.-++.
T Consensus 84 ~aDlViEav~E~l~iK~~lf~~le~~~~~~~IlaSNTSs 122 (288)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEQLAEVAPEKTIFATNSST 122 (288)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 699999978087999999999999746776699866876
No 121
>PRK05993 short chain dehydrogenase; Provisional
Probab=96.95 E-value=0.0055 Score=37.39 Aligned_cols=61 Identities=15% Similarity=0.276 Sum_probs=52.5
Q ss_pred CCCEEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC
Q ss_conf 7817997377-489999999984799089971998999999976992999789998999848
Q gi|254780924|r 448 CDHVILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA 508 (609)
Q Consensus 448 ~~~vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~ 508 (609)
+..++|-|++ .+|+.+|+.|.++|++|+..+.+++.++.+.+++.+++..|.+|++-.+++
T Consensus 4 ~K~vlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d~~~v~~~ 65 (277)
T PRK05993 4 KRSILITGCSSGIGAYCAHALQKRGWRVFATCRKPEDIAALEAEGLEAFYLDYAEPESIAAL 65 (277)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHH
T ss_conf 86899925686999999999998799999997999999999848981999726677999999
No 122
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.95 E-value=0.017 Score=34.03 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=63.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCC-EEEECCCHHHHHHHHHCCCCEEEC--CCCCHHHHHHCCHHHCC-EEEEECCCHH
Q ss_conf 8179973774899999999847990-899719989999999769929997--89998999848931467-9999359968
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIA-LLVIEDSEKKIEELRSLGIDVIYG--NATITKILLMANIEKAR-SLVVSISTAF 524 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~-v~vid~~~~~~~~~~~~g~~~~~g--d~~~~~~l~~~~i~~a~-~vi~~~~~~~ 524 (609)
+.++|.|.|.+|...++.++..|.+ +.++|.++++.+.+++.|.+..+- |...++..+..+-.+.+ .++-++++++
T Consensus 162 ~~vlV~GaG~vGl~aiq~ak~~Ga~~V~~~d~~~~kl~~a~~lGAd~~i~~~~~~~~~~~~~~~~~~~d~vvid~~G~~~ 241 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGVPQ 241 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCEEEEECCCCHH
T ss_conf 86999899838999999999859976999928999999999729989986887799999998629988869997999989
Q ss_pred HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999999995898808999
Q gi|254780924|r 525 EAAYITQEARNSNPSILIIAL 545 (609)
Q Consensus 525 ~n~~~~~~~~~~~~~~~iia~ 545 (609)
.-... .+...+..+++..
T Consensus 242 ~~~~a---~~~~~~~G~iv~~ 259 (347)
T PRK10309 242 TVELA---IEIAGPRAQLALV 259 (347)
T ss_pred HHHHH---HHHHCCCEEEEEE
T ss_conf 99999---9961897499998
No 123
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.94 E-value=0.012 Score=35.11 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEE
Q ss_conf 7817997377489999999984799089971998999999976992999789998999848931467999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLV 517 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi 517 (609)
...|++-=+|+...+++..|++.|.++... +++.++.+++.+.- .+.+++.|+.+..+-.
T Consensus 630 p~gVivqfGGQt~lnla~~L~~~gv~IlGt--s~~~Id~aEdR~~F--------~~ll~~l~i~~p~~~~ 689 (1068)
T PRK12815 630 IKGVIVQFGGQTAINLAKPLEEAGLPILGT--SPDTIDRLEDRDRF--------YQLLDELGLPHVPGLT 689 (1068)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCEEECC--CHHHHHHHHHHHHH--------HHHHHHCCCCCCCCCE
T ss_conf 997999648823679999999769949827--86886424139999--------9999973899999635
No 124
>PRK05650 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.028 Score=32.53 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=52.6
Q ss_pred CCEEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHCC------HHHCCE
Q ss_conf 817997377-48999999998479908997199899999997----6992--9997899989998489------314679
Q gi|254780924|r 449 DHVILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMAN------IEKARS 515 (609)
Q Consensus 449 ~~vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~~------i~~a~~ 515 (609)
|+|+|-|.+ -+|+.+++.+.++|++++++|.|++..++..+ .|.+ ++..|.+|++-.++.- ....|.
T Consensus 1 ~rVlITGassGIG~alA~~la~~G~~V~l~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~~~~~~~~v~~~~g~iDi 80 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKELREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 97999887649999999999988998999979889999999999844992899984589999999999999998399778
Q ss_pred EEEE
Q ss_conf 9993
Q gi|254780924|r 516 LVVS 519 (609)
Q Consensus 516 vi~~ 519 (609)
+|-.
T Consensus 81 LVNN 84 (270)
T PRK05650 81 IVNN 84 (270)
T ss_pred EEEC
T ss_conf 9624
No 125
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.92 E-value=0.0061 Score=37.08 Aligned_cols=41 Identities=29% Similarity=0.545 Sum_probs=18.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEE--ECCCHHHHHHHHHCC
Q ss_conf 79973774899999999847990899--719989999999769
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGIALLV--IEDSEKKIEELRSLG 491 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~~v~v--id~~~~~~~~~~~~g 491 (609)
|.|+|.|-+|-+++..|+++|.++.+ +|.|++..+.+.+.|
T Consensus 3 V~IiGlGLIGgSlalalk~~g~~~~i~~~d~~~~~l~~A~~~g 45 (357)
T PRK06545 3 VLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSGAQLARALGFG 45 (357)
T ss_pred EEEEEECHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCC
T ss_conf 9999778789999999985499769999669999999998689
No 126
>TIGR01625 YidE_YbjL_dupl YidE/YbjL duplication; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of E. coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport. .
Probab=96.90 E-value=0.023 Score=33.09 Aligned_cols=116 Identities=23% Similarity=0.256 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHHHHHHCCHH----CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHC--CHHHHHHHHHHHH
Q ss_conf 08886799999999627410----38558478999999999999998825416889---998415--1588998999999
Q gi|254780924|r 21 CRLPTLIGYLVAGILVGPRT----PGFVASQSLVPALAEIGIILLMFGVGLHFSVK---DLISVR--GIALPGALIQIIL 91 (609)
Q Consensus 21 l~lP~i~~~il~GillGp~~----l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~---~l~~~~--~~~~~~~~~~~~~ 91 (609)
+|+--+-|-+++|+++|-.. +.+.-|....+.+.|+|+++.++..|+|-=+. .+++.. ...-..+++.++.
T Consensus 20 ~~LG~agGvL~~GlllG~~~~~g~~~~~~~~~an~~~~~lGl~LF~~~vGl~aGpgFf~sl~~~g~L~~~~~~~l~~~~~ 99 (165)
T TIGR01625 20 IKLGNAGGVLIVGLLLGAIGATGKLTWYIPFSANLLIRELGLVLFLAGVGLSAGPGFFSSLKDGGSLLRINAGALITVVP 99 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 67888899999999998752259757770868999999986987776776421665575413757999999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999678868999999999-742389999876565541144
Q gi|254780924|r 92 GTALGALMGMVMGWSLGGSVVFGLAL-SIASTVVLLKALQENRILETD 138 (609)
Q Consensus 92 ~~~~~~~~~~~lg~~~~~all~g~~l-~~ts~~vv~~~l~~~~~~~~~ 138 (609)
+..++....+.+++++.. ..|.+. +.|+|++..-+-+..+...++
T Consensus 100 ~~~~~~~~~~ll~~~~~~--~~G~~aGa~TntpaL~~~~~~l~~~~~~ 145 (165)
T TIGR01625 100 TLLVAVLLIKLLRIDYAL--TAGMLAGATTNTPALAAANDTLRSLIAD 145 (165)
T ss_pred HHHHHHHHHHHHCCCHHH--HHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 999999999996368667--8999821134888999998644301797
No 127
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.89 E-value=0.0095 Score=35.77 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=61.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCH---HHHHH-------CCHHHCCEEEE
Q ss_conf 817997377489999999984799089971998999999976992999789998---99984-------89314679999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATIT---KILLM-------ANIEKARSLVV 518 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~---~~l~~-------~~i~~a~~vi~ 518 (609)
++|-|+|.|.+|+.+|..+...|++|++.|.|++.+++..+.-.+. .+-.++. +.+++ ..+.++|.|+=
T Consensus 6 k~VaViGAG~MG~gIA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~-l~~~~~~~~~~~~~~i~~~~~l~a~~~aDlViE 84 (310)
T PRK06130 6 QNLAIIGAGAMGSGIAALFASKGLDVVLIDPMPGALERAAQVIERQ-LGVYAPGAIAGTLQRIRMDAGLEAACGADLVIE 84 (310)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHEEECCCHHHHCCCCEEEE
T ss_conf 8898978779999999999858998899979999999999999998-653276669998741021378889668999998
Q ss_pred ECCCH-HHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 35996-89999999999958988089994698
Q gi|254780924|r 519 SISTA-FEAAYITQEARNSNPSILIIALADSD 549 (609)
Q Consensus 519 ~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~~ 549 (609)
+...+ +.-..+-....+..++-.|++.-++.
T Consensus 85 av~E~l~iK~~lf~~le~~~~~~~IlASNTSs 116 (310)
T PRK06130 85 AVPEKLDLKRDIFARLDTLCDPQTIFATNTSG 116 (310)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 88177899999999986068988389964887
No 128
>PRK06834 hypothetical protein; Provisional
Probab=96.89 E-value=0.0014 Score=41.54 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=11.3
Q ss_pred HCCCCCCHHHHHHHHHHHC
Q ss_conf 0025587999999864321
Q gi|254780924|r 332 VIAFGRSVATALTIAASLS 350 (609)
Q Consensus 332 ~~~~~~~~~~~~~~g~~l~ 350 (609)
+...+...+++..++|=|+
T Consensus 282 GqGmNtGi~DA~NLaWKLA 300 (488)
T PRK06834 282 GQGLNTGVQDAVNLGWKLA 300 (488)
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 6521123778888999999
No 129
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.88 E-value=0.003 Score=39.22 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=62.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHC--------CCCEEECCCCCHHHHHHCCHHHCCEEE
Q ss_conf 7817997377489999999984799--089971998999999976--------992999789998999848931467999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSL--------GIDVIYGNATITKILLMANIEKARSLV 517 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~--------g~~~~~gd~~~~~~l~~~~i~~a~~vi 517 (609)
|+.|.|+|.|++|..+|-.|..++. +++++|.|+++.+.-..+ +...+.+. .| ++ .+.++|.+|
T Consensus 3 r~Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~~~~~~~v~~~-~d---~~--~~~~aDvVV 76 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD-KD---YS--VTANSKVVI 76 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC-CC---HH--HHCCCCEEE
T ss_conf 8869998978889999999996699887999938898332688886604012798559937-99---99--968999999
Q ss_pred EECCC---------H--HHHH----HHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 93599---------6--8999----9999999958988089994698999
Q gi|254780924|r 518 VSIST---------A--FEAA----YITQEARNSNPSILIIALADSDSEV 552 (609)
Q Consensus 518 ~~~~~---------~--~~n~----~~~~~~~~~~~~~~iia~~~~~~~~ 552 (609)
.+-+- | +.|. .++...++++|+..+ ..+.|+-+.
T Consensus 77 itAG~~~k~g~~R~dLl~~N~~I~~~i~~~i~~~~p~~iv-ivvsNPvDv 125 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAIL-LVVSNPVDI 125 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EECCCCHHH
T ss_conf 8899999989888999998899999999998841998469-966891899
No 130
>PRK10083 putative dehydrogenase; Provisional
Probab=96.87 E-value=0.029 Score=32.47 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=62.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHH-CCC-CEEEECCCHHHHHHHHHCCCCEEECCCCC--HHHHHHCCHHHCCEEEEECCCH
Q ss_conf 7817997377489999999984-799-08997199899999997699299978999--8999848931467999935996
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKA-AGI-ALLVIEDSEKKIEELRSLGIDVIYGNATI--TKILLMANIEKARSLVVSISTA 523 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~-~~~-~v~vid~~~~~~~~~~~~g~~~~~gd~~~--~~~l~~~~i~~a~~vi~~~~~~ 523 (609)
.+.++|.|.|.+|...++.+.+ .|. ++.++|.++++.+.+++.|.+.+.-+..+ .+.+++.|. +++.++-++++.
T Consensus 161 g~~VlV~G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~~~GAd~vi~~~~~~~~~~~~~~G~-~~dvvid~~g~~ 239 (339)
T PRK10083 161 QDVALIYGAGPVGLTIVQVLKGVYGVKNVIVADRIDERLALAKESGADWVINNAQESLAEALAEKGV-KPTLIFDAACHP 239 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHCCC-CCCEEEECCCCH
T ss_conf 9889995876599999999998569978999379899999999719989984887669999985399-961999666688
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999999
Q gi|254780924|r 524 FEAAYITQEARN 535 (609)
Q Consensus 524 ~~n~~~~~~~~~ 535 (609)
.....+...+|.
T Consensus 240 ~~~~~a~~~~~~ 251 (339)
T PRK10083 240 SILEEAVTLASP 251 (339)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999998518
No 131
>PRK08132 hypothetical protein; Provisional
Probab=96.87 E-value=0.0022 Score=40.16 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7899999999999999882541
Q gi|254780924|r 47 QSLVPALAEIGIILLMFGVGLH 68 (609)
Q Consensus 47 ~~~l~~l~~lgl~~llF~~Gle 68 (609)
...++.+.++|+.==+...|..
T Consensus 69 ~rtmeil~~lGl~~~i~~~g~~ 90 (549)
T PRK08132 69 KRSLEIFDRLGCGERMVDKGVS 90 (549)
T ss_pred HHHHHHHHHCCCHHHHHHCCCC
T ss_conf 8999999986992899961774
No 132
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.87 E-value=0.017 Score=34.06 Aligned_cols=61 Identities=21% Similarity=0.148 Sum_probs=35.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEE
Q ss_conf 78179973774899999999847990899719989999999769929997899989998489314679999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVV 518 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~ 518 (609)
.+.|++-=+|+.+.+++..|+++|.++... +++.++.+++...- .+.+++.|+.+..+-.+
T Consensus 629 p~gvi~qfGGQt~~nla~~L~~~g~~ilGt--s~~~Id~aEDR~~F--------~~~l~~l~i~qp~~~~a 689 (1063)
T PRK05294 629 PKGVIVQFGGQTPLKLAKALEAAGVPILGT--SPDAIDLAEDRERF--------QKLLEKLGIKQPPNGTA 689 (1063)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCEECC--CHHHHHHHHHHHHH--------HHHHHHCCCCCCCCCEE
T ss_conf 987999738836789999999879947778--87887878758889--------99998659999997076
No 133
>PRK08244 hypothetical protein; Provisional
Probab=96.87 E-value=0.0018 Score=40.76 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=10.0
Q ss_pred CCCCCCHHHHHHHHHHHC
Q ss_conf 025587999999864321
Q gi|254780924|r 333 IAFGRSVATALTIAASLS 350 (609)
Q Consensus 333 ~~~~~~~~~~~~~g~~l~ 350 (609)
...+...+++..++|=|+
T Consensus 290 qGmNtGi~DA~NLaWKLA 307 (494)
T PRK08244 290 QGLNVGLQDAMNLGWKLA 307 (494)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 651343032454899999
No 134
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.85 E-value=0.0053 Score=37.52 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=52.2
Q ss_pred CEEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----CCCEEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 17997377-489999999984799089971998999999976-----992999789998999848------931467999
Q gi|254780924|r 450 HVILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----GIDVIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 450 ~vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
+|+|-|.+ .+|+.+|+.|.++|.+|++.|.|++..++..++ +...+.+|.+|++-.++. ...+.|.+|
T Consensus 2 nVlITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD~LV 81 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKELGEVYAIKADLSDKDDLKNLVKEAWELLGGIDALV 81 (259)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89997587789999999999879999999799899999999987418879999636998999999999999859988899
Q ss_pred E
Q ss_conf 9
Q gi|254780924|r 518 V 518 (609)
Q Consensus 518 ~ 518 (609)
-
T Consensus 82 n 82 (259)
T PRK08340 82 W 82 (259)
T ss_pred E
T ss_conf 8
No 135
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.85 E-value=0.0049 Score=37.78 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=61.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC---CC--CEEECCCCCH---HHHHH-------CCHHHC
Q ss_conf 817997377489999999984799089971998999999976---99--2999789998---99984-------893146
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL---GI--DVIYGNATIT---KILLM-------ANIEKA 513 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~---g~--~~~~gd~~~~---~~l~~-------~~i~~a 513 (609)
++|-|+|.|.+|+.+|..+...|++|++.|.|++..++..+. .. .+-.|-.++. +.+.+ ..+.++
T Consensus 5 k~VaViGAG~MG~giA~~~a~~G~~V~l~D~~~e~~~~~~~~i~~~l~~~~~~~~l~~~~~~~~l~~i~~~~~~~~~~~a 84 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLESGMATINGNLARQVAKGKISEEARAAALARITTATTLDDLADC 84 (292)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHCCC
T ss_conf 88999896699999999999679968999798899999999999999999970688889999998407776898896649
Q ss_pred CEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 7999935996-8999999999995898808999469
Q gi|254780924|r 514 RSLVVSISTA-FEAAYITQEARNSNPSILIIALADS 548 (609)
Q Consensus 514 ~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~ 548 (609)
|.||=+...+ +.-..+-..+.+..+.-.|++.-++
T Consensus 85 DlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS 120 (292)
T PRK07530 85 DLVIEAATEDETVKRKIFAQLCPVLKPEAILASNTS 120 (292)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 999988847458789899999862698848987588
No 136
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.84 E-value=0.01 Score=35.49 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=64.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCC-----EEECCCCCHH---HHHHC--------CHHH
Q ss_conf 817997377489999999984799089971998999999976992-----9997899989---99848--------9314
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGID-----VIYGNATITK---ILLMA--------NIEK 512 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~-----~~~gd~~~~~---~l~~~--------~i~~ 512 (609)
++|-|+|.|.+|+.+|..+...|++|++.|.|++..++.++.-.. +-.|..++.+ .+.+. .+++
T Consensus 3 kkV~ViGaG~MG~~IA~~~a~~G~~V~l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a~~~ 82 (289)
T PRK09260 3 EKIVVVGAGVMGRGIAYVFASSGFQTTLVDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARLSYSLDLKEAVAG 82 (289)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHCC
T ss_conf 76999796887899999999689988999799899999999999999999871799989999999558766888998476
Q ss_pred CCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 67999935996-89999999999958988089994698
Q gi|254780924|r 513 ARSLVVSISTA-FEAAYITQEARNSNPSILIIALADSD 549 (609)
Q Consensus 513 a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~~ 549 (609)
+|.|+=+...+ +.-..+-..+.+..++-.|++.-++.
T Consensus 83 aDlViEav~E~l~iK~~v~~~l~~~~~~~~IlaSNTSs 120 (289)
T PRK09260 83 ADLLIEAVPEKLEIKQAVFETADAHAPAEALIATNTST 120 (289)
T ss_pred CCEEEECCCCCHHHCHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 99999888686323689999986068998089855888
No 137
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.83 E-value=0.0069 Score=36.72 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=15.2
Q ss_pred EEEECCCHHH---HHHHHHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 7997377489---999999984799089971998999999
Q gi|254780924|r 451 VILVGYGRIG---KVIVQNLKAAGIALLVIEDSEKKIEEL 487 (609)
Q Consensus 451 vii~G~g~~g---~~~~~~L~~~~~~v~vid~~~~~~~~~ 487 (609)
++|+|+-.=| ..+.+.+.+.-..++++-.+.+++++.
T Consensus 346 ~lI~GG~~Kg~d~~~l~~~~~~~~~~v~~~G~~~~~i~~~ 385 (445)
T PRK04308 346 FVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIRRD 385 (445)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHCEEEEEECCCHHHHHHH
T ss_conf 9997676677786999999875256999989799999998
No 138
>PRK10693 response regulator of RpoS; Provisional
Probab=96.83 E-value=0.034 Score=31.95 Aligned_cols=97 Identities=15% Similarity=0.280 Sum_probs=67.6
Q ss_pred CCCCEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7990899719989999999----7699299978999899984893146799993599-6899999999999589880899
Q gi|254780924|r 470 AGIALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSNPSILIIA 544 (609)
Q Consensus 470 ~~~~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~~~~~iia 544 (609)
.|.++.+||+|+...+.++ +.|+++...+ .-++.++...-++.|.+++-..= +..-...|...|+.+++++||.
T Consensus 6 ~gkkILIVDDd~~~r~~l~~~L~~~G~~V~~A~-nG~eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIv 84 (337)
T PRK10693 6 VGKQILIVEDEPVFRSLLDSWFSSLGATTVLAA-DGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLV 84 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 899899994999999999999997899999989-9999999986589999999689999998999999998589964999
Q ss_pred EECCH--HHHHHHHHCCCCEEECHH
Q ss_conf 94698--999999976998787658
Q gi|254780924|r 545 LADSD--SEVEHLTRYGADTVVMSA 567 (609)
Q Consensus 545 ~~~~~--~~~~~l~~~Ga~~vi~p~ 567 (609)
.+... +...+--++||+.-+.-.
T Consensus 85 lTa~~~~~d~v~al~~GA~DyL~KP 109 (337)
T PRK10693 85 ISATENMADIAKALRLGVEDVLLKP 109 (337)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECC
T ss_conf 9868999999999974995899789
No 139
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.008 Score=36.29 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=53.9
Q ss_pred CCCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-C--CCEEECCCCCHHHHHHC------CHHHC
Q ss_conf 1347817997--377489999999984799089971998999999976-9--92999789998999848------93146
Q gi|254780924|r 445 TDLCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-G--IDVIYGNATITKILLMA------NIEKA 513 (609)
Q Consensus 445 ~~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g--~~~~~gd~~~~~~l~~~------~i~~a 513 (609)
.+++++++++ |.+-+|+.+++.|.++|.+|+++|.|++..+++.++ + ...+..|.+|++..+++ ...+.
T Consensus 5 ~~L~gKvalITGassGIG~aiA~~la~~Ga~Vvl~dr~~~~l~~~~~~lg~~~~~~~~DVtd~~~v~~~v~~i~~~~G~i 84 (296)
T PRK05872 5 TSLDGKVVFVTGAARGVGAELARRLHARGAKVALVDLEEAELAALAAELGDRVLTVVADVTDLAAMQAAAEEAVERFGGI 84 (296)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 88599879992710589999999999879989999899999999999838873899982799999999999999971998
Q ss_pred CEEEEE
Q ss_conf 799993
Q gi|254780924|r 514 RSLVVS 519 (609)
Q Consensus 514 ~~vi~~ 519 (609)
|.+|..
T Consensus 85 DiLVnN 90 (296)
T PRK05872 85 DVVVAN 90 (296)
T ss_pred CEEEEC
T ss_conf 787655
No 140
>PRK09126 hypothetical protein; Provisional
Probab=96.81 E-value=0.0014 Score=41.41 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=7.0
Q ss_pred EEECCCHHHHHHHHHH
Q ss_conf 9973774899999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQNL 467 (609)
Q Consensus 452 ii~G~g~~g~~~~~~L 467 (609)
.++|++-....+-+.+
T Consensus 158 llVgADG~~S~vR~~l 173 (392)
T PRK09126 158 LLVAADSRFSATRRQL 173 (392)
T ss_pred EEEEECCCCCHHHCCC
T ss_conf 9998068886111037
No 141
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=96.81 E-value=0.022 Score=33.32 Aligned_cols=88 Identities=14% Similarity=0.193 Sum_probs=64.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHCCCCEEECCCCCHHH---HHHCCHH-HCCEEEEECCCH
Q ss_conf 817997377489999999984799-08997199899999997699299978999899---9848931-467999935996
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSLGIDVIYGNATITKI---LLMANIE-KARSLVVSISTA 523 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~---l~~~~i~-~a~~vi~~~~~~ 523 (609)
+.|+|.|.|.+|...++.++..|. ++.++|.++++.+.+++.|.+.+. |.++++. .++..-. -+|.++-++++.
T Consensus 165 ~~VlV~GaG~vGl~~~~~ak~~Ga~~Vi~~d~~~~kl~~a~~lGa~~~i-~~~~~~~~~~~~~~t~~~G~Dvvid~~G~~ 243 (341)
T PRK05396 165 EDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAV-NVAKEDLRDVMAELGMTEGFDVGLEMSGAP 243 (341)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCEEE-ECCCHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 8699989975432999999984992899994899999989864994999-688506899999974899976999878989
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 89999999999958
Q gi|254780924|r 524 FEAAYITQEARNSN 537 (609)
Q Consensus 524 ~~n~~~~~~~~~~~ 537 (609)
+.-......+|..+
T Consensus 244 ~~~~~~~~~l~~gG 257 (341)
T PRK05396 244 SAFRQMLDAMNHGG 257 (341)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999863598
No 142
>PRK06184 hypothetical protein; Provisional
Probab=96.81 E-value=0.0021 Score=40.27 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=11.5
Q ss_pred HCCCCCCHHHHHHHHHHHC
Q ss_conf 0025587999999864321
Q gi|254780924|r 332 VIAFGRSVATALTIAASLS 350 (609)
Q Consensus 332 ~~~~~~~~~~~~~~g~~l~ 350 (609)
+...+...+++..++|=|+
T Consensus 302 GqGmN~Gi~DA~NLaWKLa 320 (503)
T PRK06184 302 GQGLNTSIQDAYNLGWKLA 320 (503)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 6633331556788999999
No 143
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.81 E-value=0.0011 Score=42.22 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=6.4
Q ss_pred EEECCCHHHHHHHHHH
Q ss_conf 9973774899999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQNL 467 (609)
Q Consensus 452 ii~G~g~~g~~~~~~L 467 (609)
.++|+.-....+-+.+
T Consensus 158 llIgADG~~S~vR~~~ 173 (384)
T PRK08849 158 WVIGADGANSQVRQLA 173 (384)
T ss_pred EEEEEECCCHHHHHHC
T ss_conf 7999207864667733
No 144
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.81 E-value=0.018 Score=33.82 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=21.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEE
Q ss_conf 7817997377489999999984799089
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALL 475 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~ 475 (609)
.+.+++.|-+.....+.+.+.+.|....
T Consensus 302 ~~~v~~~~~~~~~~~l~~~~~~~g~~~~ 329 (503)
T PRK08268 302 PPVWVVAGDLGAAAALAALLERLGVEIE 329 (503)
T ss_pred CCCEEECCCHHHHHHHHHHHHHCCCCCC
T ss_conf 6621204760456899999986387522
No 145
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=96.80 E-value=0.014 Score=34.61 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=64.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC---CCC--EEECCCCCH---HHHHHC-------CHHHCC
Q ss_conf 17997377489999999984799089971998999999976---992--999789998---999848-------931467
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL---GID--VIYGNATIT---KILLMA-------NIEKAR 514 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~---g~~--~~~gd~~~~---~~l~~~-------~i~~a~ 514 (609)
+|-|+|.|.+|+.+|..+...|++|++.|.|++..++..+. ..+ +-.|-.++. +.+++. .+.++|
T Consensus 1 kV~ViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ad 80 (180)
T pfam02737 1 KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISFTTDLADAVDAD 80 (180)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCCCC
T ss_conf 98999978899999999996799399997998999999999999899999725675676999985241058899975899
Q ss_pred EEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 999935996-89999999999958988089994698999999
Q gi|254780924|r 515 SLVVSISTA-FEAAYITQEARNSNPSILIIALADSDSEVEHL 555 (609)
Q Consensus 515 ~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~~~~~~~l 555 (609)
.++=+..+| +.-..+-....+..++-.|++...+.-....+
T Consensus 81 lViEav~E~l~iK~~l~~~l~~~~~~~~IlaSnTS~l~is~l 122 (180)
T pfam02737 81 LVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITEL 122 (180)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCHHHH
T ss_conf 999925176889999999999743033088752676899999
No 146
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.80 E-value=0.022 Score=33.25 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=65.9
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCC--HH----HCCEEEEECCC-
Q ss_conf 79973-774899999999847990899719989999999769929997899989998489--31----46799993599-
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMAN--IE----KARSLVVSIST- 522 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~--i~----~a~~vi~~~~~- 522 (609)
|+|.| -|++|+.+++.|.+.|+++++...|++... ..+.+.+..|..|++.++.+- .+ ..+.+....++
T Consensus 2 IlVtGATG~iG~~v~~~L~~~g~~v~~~~R~~~~~~---~~~~~~v~~d~~d~~~~~~a~~~~d~~~~~v~~v~l~~p~~ 78 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 899989981899999999868997899958856646---66675368644481148889763532312741899838998
Q ss_pred --H-HHHHHHHHHHHHHCCCCEEEEEEC----------CHHHHHHHHHCCCCEE-ECHHHH
Q ss_conf --6-899999999999589880899946----------9899999997699878-765899
Q gi|254780924|r 523 --A-FEAAYITQEARNSNPSILIIALAD----------SDSEVEHLTRYGADTV-VMSARE 569 (609)
Q Consensus 523 --~-~~n~~~~~~~~~~~~~~~iia~~~----------~~~~~~~l~~~Ga~~v-i~p~~~ 569 (609)
. +.....+..+|+.+.+ +|+.... .+.|.+.....|++++ +.|..-
T Consensus 79 ~~~~~~~~~~i~aA~~aGV~-~iV~lS~~~~~~~~~~~~~~~~~~~~~sg~~~tiLRp~~f 138 (285)
T TIGR03649 79 PDLAPPMIKFIDFARSKGVR-RFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPTWF 138 (285)
T ss_pred CCHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECHHH
T ss_conf 77678999999999984998-8999830356679861038999999736997699966399
No 147
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=96.80 E-value=0.035 Score=31.83 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=82.0
Q ss_pred CCCCCCCCCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHH-HHCCHHHCCE
Q ss_conf 1222321347817997--377489999999984799089971998999999976992999789998999-8489314679
Q gi|254780924|r 439 EVTIQKTDLCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKIL-LMANIEKARS 515 (609)
Q Consensus 439 ~~~~~~~~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l-~~~~i~~a~~ 515 (609)
.+.+.+..+..+|+.+ |.|-+|+.++++|-.+|-.||+.|.|.++.+.-.++ +.--||+..-..-- -.+--.....
T Consensus 414 ~rmP~ek~LA~~Va~VtGGasGIG~~~A~rL~~eGAhvV~aD~d~~~a~~va~~-~~~~fG~d~a~AGsdisaCGPaiGl 492 (709)
T TIGR02632 414 RRMPKEKELARRVAFVTGGASGIGRETARRLVDEGAHVVLADLDAEAAEAVAAE-IVDKFGADKAVAGSDISACGPAIGL 492 (709)
T ss_pred HCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH-HHHHCCCCCEECCCCHHCCCCCEEE
T ss_conf 247659671570688973886526899999973697799962365789999999-8631388812114320004671002
Q ss_pred EEEECCCHHHHHHHHHHHHHHCCCCEEEEEE------CCHHHHH--HHHHCCCCEEECHHHHHHHHHHHHHHHH
Q ss_conf 9993599689999999999958988089994------6989999--9997699878765899999999998742
Q gi|254780924|r 516 LVVSISTAFEAAYITQEARNSNPSILIIALA------DSDSEVE--HLTRYGADTVVMSAREIALGMLDRLNQV 581 (609)
Q Consensus 516 vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~------~~~~~~~--~l~~~Ga~~vi~p~~~~a~~~~~~l~~~ 581 (609)
.+=.|+.+.......+.+++++ .+.++|.. .+.+... +=++...|-...=+++++++-++..++.
T Consensus 493 ~~DvT~e~~v~~~f~~v~~~yG-GvD~vv~nAGi~~S~p~~~t~r~~~W~l~~di~atG~FLVareA~r~~~~Q 565 (709)
T TIGR02632 493 KLDVTDEEAVKAAFAEVALAYG-GVDIVVNNAGIAVSSPLEETERLEEWDLNLDILATGYFLVAREAARLMRKQ 565 (709)
T ss_pred EEEECCHHHHHHHHHHHHHHHC-CEEEEEECCCHHCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHC
T ss_conf 7631758999999999999749-847876525301057702322155432012010120035888999999731
No 148
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.80 E-value=0.0015 Score=41.33 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=6.2
Q ss_pred EEECCCHHHHHHHHH
Q ss_conf 997377489999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQN 466 (609)
Q Consensus 452 ii~G~g~~g~~~~~~ 466 (609)
.++|+.-.-..+-+.
T Consensus 171 llIgaDG~~S~VR~~ 185 (413)
T PRK07364 171 LVVAADGARSPIRQA 185 (413)
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899931888500354
No 149
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.79 E-value=0.036 Score=31.77 Aligned_cols=75 Identities=19% Similarity=0.322 Sum_probs=52.9
Q ss_pred CCCCCE-EEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHC------CHH
Q ss_conf 347817-99737-748999999998479908997199899999997----6992--999789998999848------931
Q gi|254780924|r 446 DLCDHV-ILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMA------NIE 511 (609)
Q Consensus 446 ~~~~~v-ii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~------~i~ 511 (609)
++++++ +|-|. +.+|+.+++.|.++|.+|++.|.|++..++..+ .|.+ .+..|.+|++-.+++ ...
T Consensus 7 ~L~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~~~~~~~~~G 86 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVEEIKANGGEAIALKADVLDKESLEQARQQILKDFG 86 (278)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 88999899958674899999999998799899997988999999999984599099998248999999999999999849
Q ss_pred HCCEEEEEC
Q ss_conf 467999935
Q gi|254780924|r 512 KARSLVVSI 520 (609)
Q Consensus 512 ~a~~vi~~~ 520 (609)
+.|.+|-.-
T Consensus 87 ~iDiLVNnA 95 (278)
T PRK08277 87 RCDILINGA 95 (278)
T ss_pred CCCEEEECC
T ss_conf 988899889
No 150
>PRK06182 short chain dehydrogenase; Validated
Probab=96.79 E-value=0.0084 Score=36.12 Aligned_cols=70 Identities=26% Similarity=0.306 Sum_probs=55.6
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC------CHHHCCEEEEEC
Q ss_conf 799737-7489999999984799089971998999999976992999789998999848------931467999935
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA------NIEKARSLVVSI 520 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~------~i~~a~~vi~~~ 520 (609)
++|-|. +-+|+.+++.|.++|++|.+.+.+++..+++.+.+.+.+..|.+|++-.+++ ...+.|.+|-.-
T Consensus 6 ~lITGassGIG~a~a~~la~~G~~V~~~~r~~~~l~~l~~~~~~~~~~Dvt~~~~v~~~~~~i~~~~g~iDiLVNNA 82 (273)
T PRK06182 6 ALVTGASSGIGKATARKLIAEGFTVYGAARRVDKMEDLASLGIHPLALDVTDEASMKAAVATILAEEGRIDVLVNNA 82 (273)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99906320999999999998799899997989999999967997999858999999999999999839988775058
No 151
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.76 E-value=0.0012 Score=41.91 Aligned_cols=12 Identities=8% Similarity=0.232 Sum_probs=4.5
Q ss_pred EEECCCHHHHHH
Q ss_conf 997377489999
Q gi|254780924|r 452 ILVGYGRIGKVI 463 (609)
Q Consensus 452 ii~G~g~~g~~~ 463 (609)
.++|+.-....+
T Consensus 159 llVgADG~~S~v 170 (405)
T PRK05714 159 LVVAADGANSAV 170 (405)
T ss_pred EEEECCCCCCHH
T ss_conf 899958998566
No 152
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.0093 Score=35.84 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=54.0
Q ss_pred CCEEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC----CCCEEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 817997377-489999999984799089971998999999976----992999789998999848------931467999
Q gi|254780924|r 449 DHVILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL----GIDVIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 449 ~~vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~----g~~~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
.+|+|-|.+ .+|+.+|+++.++|+++.+++.|++..+++.++ ...++..|.+|++-.+++ .....|.+|
T Consensus 3 ~~VlITGassGIG~a~A~~la~~G~~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~iDili 82 (256)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKARVSVYAADVRDADALAAAAADFIAAHGCPDVVI 82 (256)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 98999846029999999999988998999989889999999976799769998117999999999999999839987999
Q ss_pred E
Q ss_conf 9
Q gi|254780924|r 518 V 518 (609)
Q Consensus 518 ~ 518 (609)
.
T Consensus 83 n 83 (256)
T PRK07024 83 A 83 (256)
T ss_pred E
T ss_conf 8
No 153
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.75 E-value=0.022 Score=33.30 Aligned_cols=100 Identities=21% Similarity=0.235 Sum_probs=60.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC---CC--CEEECCCCCHH---HHHHC-------CHHHC
Q ss_conf 817997377489999999984799089971998999999976---99--29997899989---99848-------93146
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL---GI--DVIYGNATITK---ILLMA-------NIEKA 513 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~---g~--~~~~gd~~~~~---~l~~~-------~i~~a 513 (609)
.+|-|+|.|.+|+.+|..+...|++|++.|.|++..++.++. .. .+-.|-.++.+ .+.+. .+.++
T Consensus 3 ~kV~ViGaG~mG~~IA~~~a~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~a 82 (284)
T PRK07819 3 QRVGVVGAGQMGSGIAEVCARAGVDVLVFETTEEAATAGRNRIEKSLERAVSAGKLTERERDAALARLTFTTDLEDLADR 82 (284)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHCCC
T ss_conf 67999897789999999999579908999798899999999999999999872789879999999637066899997659
Q ss_pred CEEEEECCCHH-HHHHHHHHHHHHCCC-CEEEEEECC
Q ss_conf 79999359968-999999999995898-808999469
Q gi|254780924|r 514 RSLVVSISTAF-EAAYITQEARNSNPS-ILIIALADS 548 (609)
Q Consensus 514 ~~vi~~~~~~~-~n~~~~~~~~~~~~~-~~iia~~~~ 548 (609)
|.|+=+...+- .-..+-....+.-++ ..|++.-.+
T Consensus 83 dlViEav~E~l~~K~~l~~~ld~~~~~p~~IlaSNTS 119 (284)
T PRK07819 83 QLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTS 119 (284)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 9999907387888899999999742899859996588
No 154
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.74 E-value=0.024 Score=33.02 Aligned_cols=113 Identities=14% Similarity=0.230 Sum_probs=67.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC--------CCC-EEECCCCCHHHHHHCCHHHCCEEE
Q ss_conf 7817997377489999999984799-089971998999999976--------992-999789998999848931467999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL--------GID-VIYGNATITKILLMANIEKARSLV 517 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~--------g~~-~~~gd~~~~~~l~~~~i~~a~~vi 517 (609)
++.|.|+|.|++|..++-.+...+. +++++|.|++..+.-..+ +.+ .+.+.. |.+ .+.++|.+|
T Consensus 7 ~~KV~IIGaG~VG~~~A~~l~~~~l~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~v~~~~-dy~-----~~~~aDiVV 80 (322)
T PTZ00082 7 RKKISLIGSGNIGGVMAYLIQLKNLADVVLFDIVPNIPAGKALDIMHANVMAGSNCKVIGTN-SYD-----DIAGSDVVI 80 (322)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECC-CHH-----HHCCCCEEE
T ss_conf 98299989698999999999638997799997889800889998766364468885798379-999-----977999999
Q ss_pred EECC--------C--------HHHHHH----HHHHHHHHCCCCEEEEEECCHHHH--HHHHH---CCCCEEECHH
Q ss_conf 9359--------9--------689999----999999958988089994698999--99997---6998787658
Q gi|254780924|r 518 VSIS--------T--------AFEAAY----ITQEARNSNPSILIIALADSDSEV--EHLTR---YGADTVVMSA 567 (609)
Q Consensus 518 ~~~~--------~--------~~~n~~----~~~~~~~~~~~~~iia~~~~~~~~--~~l~~---~Ga~~vi~p~ 567 (609)
++-+ + -..|.. ++...++.+|+.. +..+.||-+. ...++ ..-++|+-.-
T Consensus 81 itAG~~~kpg~t~~~~~R~dLl~~Na~I~~~i~~~i~~~~p~ai-iivvsNPvDv~t~~~~k~sg~p~~rViG~G 154 (322)
T PTZ00082 81 VTAGLAKAPGKSDDEWNRDDLLPLNAKIMIEVGENIKKYCPNAF-VIVITNPLDVMVQLLLKVSGFPKNKVVGMG 154 (322)
T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEECCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 89888778999876567889999889999999999874099835-997489269999999997689822489641
No 155
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.74 E-value=0.019 Score=33.72 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=63.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCC---C--CEEECCCC--CHHH-HHH--------CCHHH
Q ss_conf 8179973774899999999847990899719989999999769---9--29997899--9899-984--------89314
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLG---I--DVIYGNAT--ITKI-LLM--------ANIEK 512 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g---~--~~~~gd~~--~~~~-l~~--------~~i~~ 512 (609)
++|-|+|.|.+|+.+|..+...|++|++.|.|++..+++.+.- . .+-.|-.+ +++. +.+ ..+.+
T Consensus 3 ~~VaViGaG~mG~giA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~al~~ 82 (308)
T PRK06129 3 GSIAIVGAGLIGRAWAIVFARAGHRVRLWDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAVLARIRATDSLADAVAD 82 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCHHHHHCC
T ss_conf 87999777899999999998589938999898899999999999999999976999876599998350722888998474
Q ss_pred CCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 67999935996-89999999999958988089994698
Q gi|254780924|r 513 ARSLVVSISTA-FEAAYITQEARNSNPSILIIALADSD 549 (609)
Q Consensus 513 a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~~ 549 (609)
+|.|+=+.+.+ +.-..+-..+.+..+.-.|++..++.
T Consensus 83 adlViEav~E~l~iK~~lf~~le~~~~~~~IlaSnTSs 120 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTSA 120 (308)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99999998077999999999999656985589845553
No 156
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.74 E-value=0.012 Score=35.18 Aligned_cols=73 Identities=22% Similarity=0.400 Sum_probs=56.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 781799737748999999998479-9089971998999999976-99299978999899984893146799993599689
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAG-IALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~-~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
..+++++|+|.+|+-+++.|.++| .++.+.-.+.++.+++.++ | +++..-+-+. ..+.++|.++++|+.++-
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~-~~l~~~DvVissTsa~~~ 251 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-----AEAVALEELL-EALAEADVVISSTSAPHP 251 (414)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHC-----CEEECHHHHH-HHHHHCCEEEEECCCCCC
T ss_conf 6769998651899999999985898779997587899999999838-----7022187788-765207999990699855
Q ss_pred H
Q ss_conf 9
Q gi|254780924|r 526 A 526 (609)
Q Consensus 526 n 526 (609)
.
T Consensus 252 i 252 (414)
T COG0373 252 I 252 (414)
T ss_pred C
T ss_conf 4
No 157
>PRK04148 hypothetical protein; Provisional
Probab=96.73 E-value=0.011 Score=35.39 Aligned_cols=97 Identities=16% Similarity=0.275 Sum_probs=77.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
Q ss_conf 81799737748999999998479908997199899999997699299978999899984893146799993599689999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~ 528 (609)
..|+=+|.|.. ..+|+.|.+.|.+++++|-|++.++++...|.+++.-|.++|+.=- =+.|+.+-+--+..|.--.
T Consensus 18 ~kIvEvGIGf~-~~vA~~L~e~g~dv~~~Din~~aV~~a~~~Gl~~v~DDif~P~l~i---Y~~a~lIYSIRPp~Elq~~ 93 (135)
T PRK04148 18 GKIAELGIGFY-FKVAKKLKESGFDVIVIDINKKAVEKAKKLGLNAFVDDIFNPNLEI---YKNAKLIYSIRPPRDLQPF 93 (135)
T ss_pred CEEEEEECCCC-HHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHH---HCCCCEEEEECCCHHHHHH
T ss_conf 73899923666-7899999874998899957655432212328763751588998888---5178879981898788899
Q ss_pred HHHHHHHHCCCCEEEEEECCHH
Q ss_conf 9999999589880899946989
Q gi|254780924|r 529 ITQEARNSNPSILIIALADSDS 550 (609)
Q Consensus 529 ~~~~~~~~~~~~~iia~~~~~~ 550 (609)
+...+|+.+.+..| .-..++.
T Consensus 94 il~lakkv~~dliI-~PL~~E~ 114 (135)
T PRK04148 94 ILELAKKLNCPLYI-KPLSGEE 114 (135)
T ss_pred HHHHHHHCCCCEEE-ECCCCCC
T ss_conf 99999975998999-7078887
No 158
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.73 E-value=0.04 Score=31.46 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=53.8
Q ss_pred CEEEECCCH-HHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHC------CHHHCCEE
Q ss_conf 179973774-8999999998479908997199899999997----699--2999789998999848------93146799
Q gi|254780924|r 450 HVILVGYGR-IGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMA------NIEKARSL 516 (609)
Q Consensus 450 ~vii~G~g~-~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~------~i~~a~~v 516 (609)
-++|.|.++ +|+.+++.|.++|.++++.|.|.+.+++..+ .+- ..+..|.+|++..+++ ...+.|.+
T Consensus 11 valVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iDiL 90 (258)
T PRK06949 11 VALVTGASSGLGQRFAQVLSQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDIL 90 (258)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 89995857799999999999879999999698899999999999659928999826899999999999999984999899
Q ss_pred EEEC
Q ss_conf 9935
Q gi|254780924|r 517 VVSI 520 (609)
Q Consensus 517 i~~~ 520 (609)
|-+-
T Consensus 91 VnnA 94 (258)
T PRK06949 91 VNNS 94 (258)
T ss_pred EECC
T ss_conf 9899
No 159
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.73 E-value=0.0084 Score=36.12 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=52.4
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCC--H-HHCCEEE
Q ss_conf 1799737-7489999999984799089971998999999976-9929997899989998489--3-1467999
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMAN--I-EKARSLV 517 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~--i-~~a~~vi 517 (609)
+|+|-|. +.+|+.+++.|.++|.+|++.+.+++..+...++ +.+.+..|.+|++..+++- + ++.|.++
T Consensus 2 ~VlVTGgs~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~el~~~~~~~d~~d~~~~~~~~~~~~~~~d~lv 74 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIV 74 (223)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCEE
T ss_conf 3999878879999999999987999999959878999998534876899852788999999999998619478
No 160
>PRK09117 consensus
Probab=96.73 E-value=0.019 Score=33.66 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=61.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCC---C--CEEECCCCCHH---HHHH-------CCHHHC
Q ss_conf 8179973774899999999847990899719989999999769---9--29997899989---9984-------893146
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLG---I--DVIYGNATITK---ILLM-------ANIEKA 513 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g---~--~~~~gd~~~~~---~l~~-------~~i~~a 513 (609)
++|-|+|.|.+|+.+|..+...|++|++.|.+++..++..+.- . .+-.+..++.+ .+.+ ..++++
T Consensus 3 ~~VaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~~~a 82 (282)
T PRK09117 3 QTVGIIGAGTMGNGIAQACAVAGLDVVMVDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALARIKGSTDYDALKDA 82 (282)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 77999897799999999999679968999898899999999999999999970688778899998406567998997559
Q ss_pred CEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 7999935996-8999999999995898808999469
Q gi|254780924|r 514 RSLVVSISTA-FEAAYITQEARNSNPSILIIALADS 548 (609)
Q Consensus 514 ~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~ 548 (609)
|.|+=+.+.+ +.-..+-....+..++-.|++.-++
T Consensus 83 DlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS 118 (282)
T PRK09117 83 DLVIEAATENLDLKLKILKQLDALVGPDAIIATNTS 118 (282)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 999987858888889999999865799818986587
No 161
>PRK07660 consensus
Probab=96.71 E-value=0.022 Score=33.21 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=62.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----CCCEEECCCCCHH---HHHHC-------CHHHC
Q ss_conf 817997377489999999984799089971998999999976-----9929997899989---99848-------93146
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----GIDVIYGNATITK---ILLMA-------NIEKA 513 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~---~l~~~-------~i~~a 513 (609)
.+|-|+|.|.+|+.+|..+...|++|++.|.|++..++..+. .-.+-.|-.++.+ .+.+. .+.++
T Consensus 4 k~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 83 (283)
T PRK07660 4 QKIVVIGAGQMGSGIAQVCAMAGYDVKVQDLKQEQLDRGLAIITKNLARQVEKGRMKEEEKEATLNRLTVTLDLDCVKEA 83 (283)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCC
T ss_conf 88999896989999999999669818999798899999999999999999870589989999998358776898997689
Q ss_pred CEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 7999935996-89999999999958988089994698
Q gi|254780924|r 514 RSLVVSISTA-FEAAYITQEARNSNPSILIIALADSD 549 (609)
Q Consensus 514 ~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~~ 549 (609)
|.++=+...+ +.-..+-..+.+..+.-.|++.-++.
T Consensus 84 DlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~ 120 (283)
T PRK07660 84 DLIIEAAVEKMDIKKKIFANLDEIAPEHAILATNTSS 120 (283)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 9999878575444299999999647997189865888
No 162
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.70 E-value=0.0035 Score=38.79 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=10.9
Q ss_pred HCCCCCCHHHHHHHHHHHC
Q ss_conf 0025587999999864321
Q gi|254780924|r 332 VIAFGRSVATALTIAASLS 350 (609)
Q Consensus 332 ~~~~~~~~~~~~~~g~~l~ 350 (609)
+...+...+++..++|=|+
T Consensus 305 GqGmNtGi~DA~NLaWKLA 323 (554)
T PRK06183 305 GQGMNSGIRDAANLAWKLA 323 (554)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 5655563777999999999
No 163
>PRK06126 hypothetical protein; Provisional
Probab=96.70 E-value=0.0033 Score=38.98 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=11.7
Q ss_pred HCCCCCCHHHHHHHHHHHC
Q ss_conf 0025587999999864321
Q gi|254780924|r 332 VIAFGRSVATALTIAASLS 350 (609)
Q Consensus 332 ~~~~~~~~~~~~~~g~~l~ 350 (609)
+...+...+++..++|=|+
T Consensus 320 GqGmNtGi~DA~NLaWKLA 338 (545)
T PRK06126 320 GYGMNTGIGDAVNLGWKLA 338 (545)
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 6510222878998998898
No 164
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.66 E-value=0.044 Score=31.15 Aligned_cols=91 Identities=15% Similarity=0.335 Sum_probs=58.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC----CEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCC
Q ss_conf 7817997377489999999984799----089971998999999976-99299978999899984893146799993599
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI----ALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSIST 522 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~----~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~ 522 (609)
..||-++|+|.+|+.+.+-+.+.+. ++.+.|.|+++.+.+.++ +.++.. | +.+. ++++|.+++++--
T Consensus 2 ~kkI~fIG~GnMg~Aii~Gl~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~--~~e~-----~~~~Dii~LaVKP 73 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITT-N--NNEV-----ANSADILILSIKP 73 (272)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCEEEC-C--HHHH-----HHHCCEEEEEECH
T ss_conf 986999856799999999999788989676999697999999999971978866-8--7999-----7319999999577
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 689999999999958988089994
Q gi|254780924|r 523 AFEAAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 523 ~~~n~~~~~~~~~~~~~~~iia~~ 546 (609)
.+..-..-.......++..++..+
T Consensus 74 ~~~~~vl~~l~~~~~~~~lviSi~ 97 (272)
T PRK12491 74 DLYSSVINQIKDQIKNDVIVVTIA 97 (272)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 899999999865526991899984
No 165
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.65 E-value=0.034 Score=31.94 Aligned_cols=86 Identities=20% Similarity=0.310 Sum_probs=60.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCC---HHHHHH-------CCHHH-CCEEE
Q ss_conf 81799737748999999998479908997199899999997699299978999---899984-------89314-67999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATI---TKILLM-------ANIEK-ARSLV 517 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~---~~~l~~-------~~i~~-a~~vi 517 (609)
+.++|.|.|.+|...++.....|.+++++|.|+++.+.+++.|.+.... +.| .+.-+. .+.+. .+.++
T Consensus 168 ~~V~V~G~G~iGl~a~~~ak~~Ga~Vi~vd~~~~rle~a~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ 246 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLN-PKDKSAREVKKLIKAFAKARGLRSTGWKIF 246 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEC-CCCCCHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 8899989748999999999985997999949999999999649989987-876778999999975414567565563699
Q ss_pred EECCCHHHHHHHHHHHHH
Q ss_conf 935996899999999999
Q gi|254780924|r 518 VSISTAFEAAYITQEARN 535 (609)
Q Consensus 518 ~~~~~~~~n~~~~~~~~~ 535 (609)
-++++......+...+|.
T Consensus 247 e~~G~~~~~~~a~~~~~~ 264 (349)
T TIGR03201 247 ECSGSKPGQESALSLLSH 264 (349)
T ss_pred EECCCHHHHHHHHHHCCC
T ss_conf 824888999999997358
No 166
>PRK07041 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.019 Score=33.71 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=53.6
Q ss_pred CEEEECCCH-HHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----CCCEEECCCCCHHHHHHC--CHHHCCEEEEEC
Q ss_conf 179973774-89999999984799089971998999999976-----992999789998999848--931467999935
Q gi|254780924|r 450 HVILVGYGR-IGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----GIDVIYGNATITKILLMA--NIEKARSLVVSI 520 (609)
Q Consensus 450 ~vii~G~g~-~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~~l~~~--~i~~a~~vi~~~ 520 (609)
.++|.|.++ +|+.+++.|.++|.+|++.|.|++..++..++ ....+..|.+|++..++. ...+.|.++..-
T Consensus 9 ~~lITGgs~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~~d~lv~na 87 (240)
T PRK07041 9 KVLVVGGSSGIGLAAARAFAARGADVTIASRSRERLAAAARALGGPRPVRTAALDITDEAAVDAFFAEAGPFDHVVITA 87 (240)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 8999577888999999999987999999959889999999984788866999847999999999999709878899823
No 167
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.64 E-value=0.012 Score=35.19 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=51.8
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC----C--CCEEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 7997377-489999999984799089971998999999976----9--92999789998999848------931467999
Q gi|254780924|r 451 VILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL----G--IDVIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~----g--~~~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|-|.+ .+|+.+++.|.++|.+|++.|.|++..+++.++ + ...+..|.+|++..+++ ...+.|.+|
T Consensus 8 ~lITGgs~GIG~a~a~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iDilv 87 (246)
T PRK05653 8 ALVTGASRGIGRAIALRLAADGARVVIYDSNEEAAEALAEELRAAGGEAALLVFDVTDEAAVRALIEAAVERFGGLDVLV 87 (246)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99938975899999999998799999997999999999999996599489999728999999999999999749986999
Q ss_pred EEC
Q ss_conf 935
Q gi|254780924|r 518 VSI 520 (609)
Q Consensus 518 ~~~ 520 (609)
.+-
T Consensus 88 nnA 90 (246)
T PRK05653 88 NNA 90 (246)
T ss_pred ECC
T ss_conf 899
No 168
>PRK06185 hypothetical protein; Provisional
Probab=96.63 E-value=0.0035 Score=38.72 Aligned_cols=11 Identities=18% Similarity=0.093 Sum_probs=3.8
Q ss_pred EECCCHHHHHH
Q ss_conf 97377489999
Q gi|254780924|r 453 LVGYGRIGKVI 463 (609)
Q Consensus 453 i~G~g~~g~~~ 463 (609)
++|+.-..+.+
T Consensus 161 vVGADG~~S~V 171 (409)
T PRK06185 161 TVGADGRHSRV 171 (409)
T ss_pred EEECCCCCCHH
T ss_conf 99738998478
No 169
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.62 E-value=0.013 Score=34.74 Aligned_cols=70 Identities=21% Similarity=0.354 Sum_probs=51.1
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 79973-7748999999998479908997199899999997----699--2999789998999848------931467999
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|-| .+.+|+.+|+.|.++|.+|++.|.|++..++..+ .|. ..+..|.+|++-.++. ...+.|.+|
T Consensus 8 ~lITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lV 87 (253)
T PRK08217 8 IVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAQCAALGGEAEVYAANVTDEEDVEATFAQIAEDFGQLNGLI 87 (253)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99948877899999999998799899997999999999999996599489998247999999999999999839985999
Q ss_pred EEC
Q ss_conf 935
Q gi|254780924|r 518 VSI 520 (609)
Q Consensus 518 ~~~ 520 (609)
-.-
T Consensus 88 nNA 90 (253)
T PRK08217 88 NNA 90 (253)
T ss_pred ECC
T ss_conf 857
No 170
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.61 E-value=0.012 Score=35.07 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=54.4
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC------CHHHCCEEEEEC
Q ss_conf 79973-77489999999984799089971998999999976992999789998999848------931467999935
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA------NIEKARSLVVSI 520 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~------~i~~a~~vi~~~ 520 (609)
++|-| .+.+|+.+++.|.++|++|...+.|++.++++.+.+...+..|.+|++..+++ ...+.|.+|-.-
T Consensus 4 vlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dvtd~~~i~~~~~~~~~~~g~iDiLVNNA 80 (274)
T PRK05693 4 VLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHQGLDVLINNA 80 (274)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99948885899999999998799999997999999999848991899846998999999999999729976899888
No 171
>KOG1370 consensus
Probab=96.61 E-value=0.011 Score=35.20 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=63.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 78179973774899999999847990899719989999999769929997899989998489314679999359968999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
..-++|||||.+|...|+.|+..|..|.+.|-||-..-++..+|+++..- ++ -+.++|.++.+|++. |+
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg~ga~VivTEiDPI~ALQAaMeG~~V~tm--------~e-a~~e~difVTtTGc~--di 282 (434)
T KOG1370 214 GKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTL--------EE-AIREVDIFVTTTGCK--DI 282 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCEEEEH--------HH-HHHCCCEEEECCCCC--CH
T ss_conf 51799963576456689997506868999605806899987525375468--------87-641277899756873--12
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999995898808999
Q gi|254780924|r 528 YITQEARNSNPSILIIAL 545 (609)
Q Consensus 528 ~~~~~~~~~~~~~~iia~ 545 (609)
..-.+.++.- +..|++-
T Consensus 283 i~~~H~~~mk-~d~IvCN 299 (434)
T KOG1370 283 ITGEHFDQMK-NDAIVCN 299 (434)
T ss_pred HHHHHHHHCC-CCCEEEC
T ss_conf 3399997476-7737852
No 172
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.61 E-value=0.016 Score=34.19 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=52.7
Q ss_pred CCCE-EEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHC------CHHHCCEEEE
Q ss_conf 7817-997-377489999999984799089971998999999976-992999789998999848------9314679999
Q gi|254780924|r 448 CDHV-ILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMA------NIEKARSLVV 518 (609)
Q Consensus 448 ~~~v-ii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~------~i~~a~~vi~ 518 (609)
++++ +|- |.+-+|+.+++.|.++|.+|++.|.|++..++..++ +...+..|.+|++-.+++ ...+.|.+|-
T Consensus 6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iDiLVN 85 (255)
T PRK06057 6 AGRVAVITGGASGIGLATARRMRAEGATVVVGDIDPEAGKAAADELGGLFVQVDVTDEDAVNALFDTAAETYGSVDIAFN 85 (255)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99989996848889999999999869989999698899999998649979998169999999999999998199878998
No 173
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.60 E-value=0.014 Score=34.60 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=51.3
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC--C--CCEEECCCCCHHHHHHC------CHHHCCEEEEE
Q ss_conf 7997-377489999999984799089971998999999976--9--92999789998999848------93146799993
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL--G--IDVIYGNATITKILLMA------NIEKARSLVVS 519 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~--g--~~~~~gd~~~~~~l~~~------~i~~a~~vi~~ 519 (609)
++|- |.+.+|+.+++.|.++|.+|++.|.|++..++..++ + ...+.+|.+|++-.++. ...+.|.+|-+
T Consensus 9 alITGgs~GIG~aia~~la~~G~~V~i~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lInn 88 (250)
T PRK07231 9 AIVTGAGSGFGEGIARRFAAEGARVVVTDRNQEAAERVAAEIRGGRAIAVAADVSDEADVRAAVEAALERFGSVDILVNN 88 (250)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99938886899999999998799999997988999999998449967999930799999999999999981997199988
No 174
>PRK05717 oxidoreductase; Validated
Probab=96.59 E-value=0.017 Score=34.03 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=52.8
Q ss_pred CCCCCE-EEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CCC--EEECCCCCHHHHHHC------CHHHCC
Q ss_conf 347817-997-377489999999984799089971998999999976-992--999789998999848------931467
Q gi|254780924|r 446 DLCDHV-ILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GID--VIYGNATITKILLMA------NIEKAR 514 (609)
Q Consensus 446 ~~~~~v-ii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~~--~~~gd~~~~~~l~~~------~i~~a~ 514 (609)
++.+++ +|- |.+.+|+.+++.|.++|.+|++.|.|+++.++..++ +.+ .+.+|.+|++-.++. ...+.|
T Consensus 7 ~l~GKvalITG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~i~~~~~~~G~id 86 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGAKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLD 86 (255)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99998899958788899999999998799899996988999999998489758999307999999999999999829998
Q ss_pred EEEEE
Q ss_conf 99993
Q gi|254780924|r 515 SLVVS 519 (609)
Q Consensus 515 ~vi~~ 519 (609)
.+|..
T Consensus 87 ~lvnN 91 (255)
T PRK05717 87 ALVCN 91 (255)
T ss_pred EEEEC
T ss_conf 99987
No 175
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=96.58 E-value=0.05 Score=30.81 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=29.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHH
Q ss_conf 817997377489999999984799-0899719989
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEK 482 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~ 482 (609)
.+|.|+|.|.+|..+++.|...|. ++.++|.|.-
T Consensus 2 skVlivG~GglG~~~~~~La~~Gvg~i~lvD~D~v 36 (134)
T pfam00899 2 SRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTV 36 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 88999898889999999999938974999989567
No 176
>PRK08324 short chain dehydrogenase; Validated
Probab=96.58 E-value=0.018 Score=33.94 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=56.7
Q ss_pred CCCCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC---C--CCEEECCCCCHHHHHHCC------H
Q ss_conf 21347817997--377489999999984799089971998999999976---9--929997899989998489------3
Q gi|254780924|r 444 KTDLCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL---G--IDVIYGNATITKILLMAN------I 510 (609)
Q Consensus 444 ~~~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~---g--~~~~~gd~~~~~~l~~~~------i 510 (609)
++.+.++|.++ |.+.+|+.+++.|.++|.+|++.|.|++..++..++ + ...+..|.||++..+++= .
T Consensus 416 ~~~L~GKVALVTGga~GIG~A~A~~fa~eGA~Vvl~D~~~~~l~~~a~el~~~~~~~~~~~DVtd~~~v~~~v~~~~~~f 495 (676)
T PRK08324 416 PKPLAGKVALVTGAAGGIGLATAKRLAAEGACVVLADIDEEAAEAAAAELGGRDRALGVACDVTDEAAVQAAFEEAALAF 495 (676)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 98889987999479881629999999987998999958889999999997079947999806899999999999999985
Q ss_pred HHCCEEEEEC
Q ss_conf 1467999935
Q gi|254780924|r 511 EKARSLVVSI 520 (609)
Q Consensus 511 ~~a~~vi~~~ 520 (609)
...|.+|..-
T Consensus 496 GgIDiLVnNA 505 (676)
T PRK08324 496 GGVDIVVSNA 505 (676)
T ss_pred CCCCEEEECC
T ss_conf 9988899767
No 177
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.58 E-value=0.05 Score=30.78 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=64.7
Q ss_pred CCEEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----CCCEEECCCCCHHHHHHCCHHHCCEEEEECCC
Q ss_conf 8179973-77489999999984799089971998999999976-----99299978999899984893146799993599
Q gi|254780924|r 449 DHVILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----GIDVIYGNATITKILLMANIEKARSLVVSIST 522 (609)
Q Consensus 449 ~~vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~ 522 (609)
.+++|+| -|.+|+..++.|.++|.+++++..|.|+.++..++ +.+.-..+..+.+- ++..+.++|.++.+...
T Consensus 29 ~~~~V~G~tG~vG~~~A~~lA~~Ga~v~lv~R~~ek~~~~a~~i~~r~g~~~~~~~~~~~~~-~~~~l~~adiV~~a~aA 107 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAA-RAAAIKGADVVFAAGAA 107 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH-HHHHHCCCCEEEECCHH
T ss_conf 88999858857899999999983997999958788899999999997098731135788778-99774669899964277
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 689999999999958988089994698
Q gi|254780924|r 523 AFEAAYITQEARNSNPSILIIALADSD 549 (609)
Q Consensus 523 ~~~n~~~~~~~~~~~~~~~iia~~~~~ 549 (609)
...-+ .... ...+..++++=++-.
T Consensus 108 Gv~~~--~~~~-~~~k~l~Vv~DVNAv 131 (194)
T cd01078 108 GVELL--EKLA-WAPKPLAVAADVNAV 131 (194)
T ss_pred HHHHH--HHHH-HCCCCCEEEEECCCC
T ss_conf 78887--8888-508886599865899
No 178
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.57 E-value=0.051 Score=30.76 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=50.0
Q ss_pred CCCCE-EEECCC-H-HHHHHHHHHHHCCCCEEEECCCHHHHHH----HHHC-CC---CEEECCCCCHHHHHHC------C
Q ss_conf 47817-997377-4-8999999998479908997199899999----9976-99---2999789998999848------9
Q gi|254780924|r 447 LCDHV-ILVGYG-R-IGKVIVQNLKAAGIALLVIEDSEKKIEE----LRSL-GI---DVIYGNATITKILLMA------N 509 (609)
Q Consensus 447 ~~~~v-ii~G~g-~-~g~~~~~~L~~~~~~v~vid~~~~~~~~----~~~~-g~---~~~~gd~~~~~~l~~~------~ 509 (609)
+++++ +|-|.+ + +|+.+++.|.++|.+|++.|.|++..++ +.++ +. ..+.+|.+|++-.+++ .
T Consensus 14 L~gKvalVTGgsg~GIG~a~a~~la~~Ga~V~i~d~~~~~~~e~~~~~~~~~g~~~v~~~~~Dvt~~~~v~~~v~~~~~~ 93 (261)
T PRK07831 14 LAGKVVVVTAAAGTGIGSATARRALEEGADVVISDIHERRLGETADELAAELGLGRVEGVVCDVTSEAQVDALIDAAVER 93 (261)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 69984999499964789999999998799899980877778999999998438772899975689999999999999998
Q ss_pred HHHCCEEEEEC
Q ss_conf 31467999935
Q gi|254780924|r 510 IEKARSLVVSI 520 (609)
Q Consensus 510 i~~a~~vi~~~ 520 (609)
..+.|.+|-.-
T Consensus 94 ~G~iDiLVNNA 104 (261)
T PRK07831 94 LGRLDVLVNNA 104 (261)
T ss_pred HCCCCEEEECC
T ss_conf 29986999888
No 179
>PRK07190 hypothetical protein; Provisional
Probab=96.57 E-value=0.004 Score=38.35 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=11.5
Q ss_pred HCCCCCCHHHHHHHHHHHC
Q ss_conf 0025587999999864321
Q gi|254780924|r 332 VIAFGRSVATALTIAASLS 350 (609)
Q Consensus 332 ~~~~~~~~~~~~~~g~~l~ 350 (609)
+...+...+++..++|=|+
T Consensus 292 GqGmNtGiqDA~NLaWKLA 310 (480)
T PRK07190 292 GQGLNTGLADAFNLMWKLH 310 (480)
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 6620111677888999999
No 180
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.57 E-value=0.0021 Score=40.23 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=7.1
Q ss_pred EEECCCHHHHHHHHHH
Q ss_conf 9973774899999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQNL 467 (609)
Q Consensus 452 ii~G~g~~g~~~~~~L 467 (609)
+++|+.-....+-+.+
T Consensus 159 llVgaDG~~S~vR~~l 174 (405)
T PRK08850 159 LVVGADGANSWVRRQL 174 (405)
T ss_pred EEEEECCCCHHHHHHC
T ss_conf 8999169873789972
No 181
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.56 E-value=0.0014 Score=41.43 Aligned_cols=20 Identities=5% Similarity=0.081 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999999998825
Q gi|254780924|r 47 QSLVPALAEIGIILLMFGVG 66 (609)
Q Consensus 47 ~~~l~~l~~lgl~~llF~~G 66 (609)
...++.+-.+|+.==+...|
T Consensus 79 ~RTlEil~~~Gla~~i~~~g 98 (634)
T PRK08294 79 CRTMEMFQAFGFAERILAEA 98 (634)
T ss_pred HHHHHHHHHCCCHHHHHHCC
T ss_conf 89999998779858998526
No 182
>TIGR00946 2a69 Auxin Efflux Carrier; InterPro: IPR014024 This entry is mostly composed of known or predicted PIN proteins from plants, though some homologous prokaryotic proteins are also included. The PIN proteins are components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells , . Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments..
Probab=96.56 E-value=0.051 Score=30.71 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1002466666422202------7614568999997668999999998865--3114798862025677776555422122
Q gi|254780924|r 255 GVSLSLGAFFAGMILA------ESELSQSAAQESLPLRDAFSVLFFISVG--MMFNPDILISNPILLMMAVIIVIIGKAL 326 (609)
Q Consensus 255 g~s~~lgaf~aG~~l~------~~~~~~~~~~~~~~~~~~~~~~fFv~iG--~~l~~~~l~~~~~~~l~~~~~~~~~k~~ 326 (609)
-..|.+-+++.|+++. |....+.+.+.++.+.+-..|.--+++| +.+++..+...-..+....++++++-|+
T Consensus 458 ~~~P~~~~~Lls~il~lv~~~~n~~~P~~~~~s~~~Ls~a~~p~alfslGlfl~L~~~~~~~~~~~~~~a~~~rf~~~Pa 537 (608)
T TIGR00946 458 IRFPPLIASLLSLILSLVGFKWNFTMPGLILKSISILSGAALPMALFSLGLFLALQPRKLKLGVADAILALIVRFLVGPA 537 (608)
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 32542689999999999861146604789999987532789999999999999753568762414899999999999999
Q ss_pred HHHHHHCCCC--CCHHHH--HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3211000255--879999--99864321220256788988764178786687787788899999999999867
Q gi|254780924|r 327 IAFIVVIAFG--RSVATA--LTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVLA 395 (609)
Q Consensus 327 ~~~~~~~~~~--~~~~~~--~~~g~~l~~~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s~~itp~l~~~~ 395 (609)
..+......+ ++.-+. ..+-..|++ +.+...+|.+.+.=.+...+.++...+++.+++|+...+.
T Consensus 538 ~~~~~~~~~GGsl~g~~~~vai~~aA~P~----~~v~~Vla~~y~~d~~~~~~~~~~s~~lsL~~~p~~~~ll 606 (608)
T TIGR00946 538 VMAVISKLIGGSLRGLELSVAIVQAALPQ----GIVAAVLAKEYEVDVELASTAVILSTVLSLLVLPLYIILL 606 (608)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999726544227899999998355----6889887654056788998899999999999999999997
No 183
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.55 E-value=0.0061 Score=37.09 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=10.1
Q ss_pred HHHHHHCCCCEEECHHHHHHHHHHHHH
Q ss_conf 999997699878765899999999998
Q gi|254780924|r 552 VEHLTRYGADTVVMSAREIALGMLDRL 578 (609)
Q Consensus 552 ~~~l~~~Ga~~vi~p~~~~a~~~~~~l 578 (609)
...+++.+...++..+.+.|.+.++..
T Consensus 384 ~~~l~~~~~~~~~~~~le~Av~~a~~~ 410 (448)
T COG0771 384 AAALKEAGPSLVICETLEEAVQLAREL 410 (448)
T ss_pred HHHHHHCCCCEEECCCHHHHHHHHHHH
T ss_conf 999875278536147699999999987
No 184
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=96.54 E-value=0.011 Score=35.27 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=61.3
Q ss_pred CEEEECCC-HHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHC--------CCCEEECCCCCHHHHHHCCHHHCCEEEE
Q ss_conf 17997377-489999999984799--089971998999999976--------9929997899989998489314679999
Q gi|254780924|r 450 HVILVGYG-RIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSL--------GIDVIYGNATITKILLMANIEKARSLVV 518 (609)
Q Consensus 450 ~vii~G~g-~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~--------g~~~~~gd~~~~~~l~~~~i~~a~~vi~ 518 (609)
.|.|+|.| .+|..++-.|..++. +++++|.|+++.+....+ ..+.+.++. + ...+.++|.++.
T Consensus 2 KV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~-~-----~~~~~daDiVVi 75 (142)
T pfam00056 2 KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGGD-D-----YEALKDADVVVI 75 (142)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCC-C-----HHHHCCCCEEEE
T ss_conf 8999898778999999999747966347885057764117999986144347887697488-3-----888378999998
Q ss_pred ECCCH-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 35996-----------8999----9999999958988089994698999
Q gi|254780924|r 519 SISTA-----------FEAA----YITQEARNSNPSILIIALADSDSEV 552 (609)
Q Consensus 519 ~~~~~-----------~~n~----~~~~~~~~~~~~~~iia~~~~~~~~ 552 (609)
+.+.. +.|. .++...++++|+..+ ..+.||-+.
T Consensus 76 taG~~~k~g~~R~dll~~Na~I~~~i~~~i~~~~p~~iv-ivvtNPvDv 123 (142)
T pfam00056 76 TAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIV-LVVSNPVDI 123 (142)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-EEECCCHHH
T ss_conf 157778999877899997469999999999976998199-994594688
No 185
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.53 E-value=0.021 Score=33.45 Aligned_cols=75 Identities=15% Similarity=0.270 Sum_probs=56.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC--CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHH
Q ss_conf 7817997377489999999984799-089971998999999976--9929997899989998489314679999359968
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL--GIDVIYGNATITKILLMANIEKARSLVVSISTAF 524 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~--g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~ 524 (609)
..+++|+|.|++|+.+++.|.++|. ++.++..+.++.+++.+. +..+ ...+-+.+ .+.++|.+|++|+.++
T Consensus 181 ~~~vlvvGaGem~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~~~~~~-----~~~~~l~~-~l~~aDivisaT~a~~ 254 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASA-----HYLSELPQ-LIKKADIIIAAVNVLE 254 (414)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC-----CCHHHHHH-HHHHCCEEEEECCCCH
T ss_conf 28389966864789999999976998799945756779999997088850-----16999999-9863887998169824
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780924|r 525 EAAY 528 (609)
Q Consensus 525 ~n~~ 528 (609)
--+.
T Consensus 255 ~ii~ 258 (414)
T PRK13940 255 YIVT 258 (414)
T ss_pred HHCC
T ss_conf 4404
No 186
>PRK12829 short chain dehydrogenase; Provisional
Probab=96.52 E-value=0.017 Score=33.94 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC----CCCEEECCCCCHHHHHHC------CHHHCC
Q ss_conf 47817997--377489999999984799089971998999999976----992999789998999848------931467
Q gi|254780924|r 447 LCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL----GIDVIYGNATITKILLMA------NIEKAR 514 (609)
Q Consensus 447 ~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~----g~~~~~gd~~~~~~l~~~------~i~~a~ 514 (609)
++++++++ |.+-+|+.+++.|.++|.+|++.|.|++..++..++ +...+..|.+|++-.+++ ...+.|
T Consensus 9 L~GKvalVTGgs~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iD 88 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLD 88 (264)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99997999473768999999999987998999979989999999974799759999628999999999999999739998
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780924|r 515 SLVV 518 (609)
Q Consensus 515 ~vi~ 518 (609)
.+|-
T Consensus 89 iLVN 92 (264)
T PRK12829 89 VLVN 92 (264)
T ss_pred EEEE
T ss_conf 9998
No 187
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family; InterPro: IPR004771 Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport . The monovalent Cation:Proton antiporter-1 (CPA1) family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. This family represent the K(+)/H(+) antiporter. ; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016021 integral to membrane.
Probab=96.52 E-value=0.055 Score=30.53 Aligned_cols=98 Identities=12% Similarity=0.201 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCHH---------HHHHHHHHHCC
Q ss_conf 6899999999886531147988620256777765554221----2232110002558799---------99998643212
Q gi|254780924|r 285 LRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIVIIGK----ALIAFIVVIAFGRSVA---------TALTIAASLSQ 351 (609)
Q Consensus 285 ~~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~~~~k----~~~~~~~~~~~~~~~~---------~~~~~g~~l~~ 351 (609)
+.++=..++-..+|+++|++.+++.|..++..-...+..- .+..+...+..+..+. .+...|..++.
T Consensus 63 laE~GV~lLmF~~GLE~d~~~L~~~~k~~~~~g~lq~~~~~GfG~ll~~~~~~~~g~~~~GeRHikfsv~a~~~G~~L~~ 142 (314)
T TIGR00932 63 LAELGVILLMFLIGLELDLERLKKLRKAAFGVGVLQVLVSGGFGVLLGLLLGHLLGLALGGERHIKFSVAAVVIGIILAL 142 (314)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98888999999988732889999999999722077642226789999999999850357886025788999999999999
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 202567889887641787866877877888999
Q gi|254780924|r 352 IGEFSFILANLGVELGILPDQARDLILASSIIS 384 (609)
Q Consensus 352 ~g~~~~v~a~~a~~~g~i~~~~~~~i~~~~~~s 384 (609)
.+ .+ +..+.=.+.+.++.+..+..+.+.++.
T Consensus 143 ~S-ta-v~~~~L~E~~~~~~~~G~~~l~~l~~~ 173 (314)
T TIGR00932 143 SS-TA-VVVQVLKERNLLKTREGQTVLGILLFQ 173 (314)
T ss_pred HH-HH-HHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99-99-999998650533346789999999999
No 188
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase; InterPro: IPR011548 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators . 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterised 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate . HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase. ; GO: 0008442 3-hydroxyisobutyrate dehydrogenase activity, 0051287 NAD binding.
Probab=96.52 E-value=0.022 Score=33.28 Aligned_cols=67 Identities=27% Similarity=0.356 Sum_probs=55.5
Q ss_pred ECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
Q ss_conf 737748999999998479908997199899999997699299978999899984893146799993599689999
Q gi|254780924|r 454 VGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 454 ~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~ 528 (609)
+|.|..|--.|++|-|.||++.+-|-+|++|+++.+.|.++ +.++. .-+++||.||...|--.....
T Consensus 2 IGLGNMGgPMA~NL~KAGH~v~~FDL~p~av~~~v~aG~~~----A~S~~----~a~~~Ad~vITMLPAg~HV~s 68 (290)
T TIGR01692 2 IGLGNMGGPMAANLLKAGHAVRVFDLSPKAVEELVEAGAQA----AASAA----EAAEGADVVITMLPAGKHVIS 68 (290)
T ss_pred CCCCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCHHC----CCCHH----HHHCCCCEEEECCCCCHHHHH
T ss_conf 78888822799998611872577517889999999600220----54579----884558868634886034899
No 189
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.51 E-value=0.033 Score=32.00 Aligned_cols=122 Identities=19% Similarity=0.160 Sum_probs=71.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE-CCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
Q ss_conf 1799737748999999998479908997-199899999997699299978999899984893146799993599689999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVI-EDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vi-d~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~ 528 (609)
.+.|.|.|++|..+++.+.+.|++|.+- -.+|+..+.+.++-...+.| .+.++. .+.+|.++++++=+..--
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~-~~~~dA-----~~~aDVVvLAVP~~a~~~- 75 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITG-GSNEDA-----AALADVVVLAVPFEAIPD- 75 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCC-CCHHHH-----HHCCCEEEEECCHHHHHH-
T ss_conf 7999625718789999999679739996478806788999864565334-776888-----843998999545787776-
Q ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHH
Q ss_conf 99999995898808999469899999997699878765899999999998742
Q gi|254780924|r 529 ITQEARNSNPSILIIALADSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQV 581 (609)
Q Consensus 529 ~~~~~~~~~~~~~iia~~~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~ 581 (609)
+....++...+ ||+.-+.++-+. ...-+-.+....+.-+++.+++.+.+.
T Consensus 76 v~~~l~~~~~~-KIvID~tnp~~~--~~~~~~~~~~~~~~saae~va~~lp~a 125 (211)
T COG2085 76 VLAELRDALGG-KIVIDATNPIEV--NGEPGDLYLVPSEGSAAEIVAKLLPGA 125 (211)
T ss_pred HHHHHHHHHCC-EEEEECCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 99999987099-099966887544--688301036888885999999977983
No 190
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.51 E-value=0.028 Score=32.52 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=7.0
Q ss_pred CEEECCCCCHHHHHHC
Q ss_conf 2999789998999848
Q gi|254780924|r 493 DVIYGNATITKILLMA 508 (609)
Q Consensus 493 ~~~~gd~~~~~~l~~~ 508 (609)
.+.+-+..|++++.++
T Consensus 366 sv~~~~~~d~~ii~~~ 381 (441)
T PRK08655 366 SVLFPKGADPEVILEL 381 (441)
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9992699997999999
No 191
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.51 E-value=0.02 Score=33.60 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=53.3
Q ss_pred CCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-C--CCEEECCCCCHHHHHHC------CHHHCC
Q ss_conf 347817997--377489999999984799089971998999999976-9--92999789998999848------931467
Q gi|254780924|r 446 DLCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-G--IDVIYGNATITKILLMA------NIEKAR 514 (609)
Q Consensus 446 ~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g--~~~~~gd~~~~~~l~~~------~i~~a~ 514 (609)
+++++++++ |...+|+.+++.|.++|.+|++.|.|++..+++.++ + ...+.+|.+|++-.++. ...+.|
T Consensus 3 ~L~gKvalVTGgs~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~fG~iD 82 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGACVAILDIDADNGAAVAASLGERARFIATDITDDAAIERAVATAVARFGGLD 82 (261)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999899948776899999999998799899997988999999998199728998138999999999999999819987
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780924|r 515 SLVV 518 (609)
Q Consensus 515 ~vi~ 518 (609)
.+|-
T Consensus 83 iLVN 86 (261)
T PRK08265 83 ILVN 86 (261)
T ss_pred EEEE
T ss_conf 8998
No 192
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=96.50 E-value=0.027 Score=32.64 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=66.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHH-------------------HHHHC--C----CCE-EECCCC
Q ss_conf 7817997377489999999984799-0899719989999-------------------99976--9----929-997899
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIE-------------------ELRSL--G----IDV-IYGNAT 500 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~-------------------~~~~~--g----~~~-~~gd~~ 500 (609)
..||+|||.|.+|...++.|.+.|+ +.++||.|.--+. -+++. . .++ ..-|.-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 09489994584539999999981888189971201022232126677662314378999999998619874676057660
Q ss_pred CHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 98999848931467999935996899999999999589880899
Q gi|254780924|r 501 ITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIA 544 (609)
Q Consensus 501 ~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia 544 (609)
+++.+++.-.++.|++|=+.|+-..-..+..+++.+. .++|.
T Consensus 110 t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k--i~vIs 151 (263)
T COG1179 110 TEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK--IPVIS 151 (263)
T ss_pred CHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCC--CCEEE
T ss_conf 6856999816899879981320377899999999859--97796
No 193
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.49 E-value=0.0049 Score=37.72 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=44.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCH
Q ss_conf 81799737748999999998479908997199899999997699299978999899984893
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANI 510 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i 510 (609)
.+|+|+|.|..|..+|-.|.+.|++|+++|.+++ ...+.+ ..+.-.+...+.|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~~~---~~~~~~-r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPR---ELLERG-RGIALSPNALRALERLGL 60 (387)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---CCCCCC-EEEEECHHHHHHHHHCCC
T ss_conf 5499999789999999999828996899907761---135575-599989899999998499
No 194
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.025 Score=32.90 Aligned_cols=80 Identities=15% Similarity=0.197 Sum_probs=56.6
Q ss_pred CCCCCCCCCCEEEE-C-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHC----
Q ss_conf 22321347817997-3-7748999999998479908997199899999997----699--2999789998999848----
Q gi|254780924|r 441 TIQKTDLCDHVILV-G-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMA---- 508 (609)
Q Consensus 441 ~~~~~~~~~~vii~-G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~---- 508 (609)
...+.|+++.++++ | ..-+|+.+|+.|.++|.+|+++|.|++..++..+ .|- ..+..|.+|++..++.
T Consensus 32 ~~~P~dL~GKvaLITGassGIG~aiA~~la~~Ga~Vvl~~R~~~~l~~~~~~i~~~g~~~~~~~~Dvtd~~~v~~~v~~~ 111 (290)
T PRK05866 32 PRTPVDLTGKRILLTGASSGIGEAAAEKFARRGATVVAVARRKDLLDAVADRITAAGGDAMAIPCDLSDLDAVDALVADV 111 (290)
T ss_pred CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 99497899998999081309999999999986998999989999999999999964990899977889899999999999
Q ss_pred --CHHHCCEEEEEC
Q ss_conf --931467999935
Q gi|254780924|r 509 --NIEKARSLVVSI 520 (609)
Q Consensus 509 --~i~~a~~vi~~~ 520 (609)
...+.|.+|-.-
T Consensus 112 ~~~~G~iDiLVNNA 125 (290)
T PRK05866 112 EERIGGVDILINNA 125 (290)
T ss_pred HHHHCCCCEEEECC
T ss_conf 99859988899757
No 195
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.48 E-value=0.052 Score=30.68 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=63.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHH-CCCCEEECCCCCH---HHHHHCCHHHCCEEEEECCCHH
Q ss_conf 17997377489999999984799-08997199899999997-6992999789998---9998489314679999359968
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRS-LGIDVIYGNATIT---KILLMANIEKARSLVVSISTAF 524 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~-~g~~~~~gd~~~~---~~l~~~~i~~a~~vi~~~~~~~ 524 (609)
.++|+|.|++|.-.+...+..|. +++++|.++++.+.+++ .+.+.+.-+..+. ..++.-+-..+|.++-++++..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCHH
T ss_conf 89998888999999999987698279997999899999998779718724630147889998608987999999989979
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999999958
Q gi|254780924|r 525 EAAYITQEARNSN 537 (609)
Q Consensus 525 ~n~~~~~~~~~~~ 537 (609)
.-..+...+|..+
T Consensus 251 ~~~~ai~~~r~gG 263 (350)
T COG1063 251 ALDQALEALRPGG 263 (350)
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999999602598
No 196
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.47 E-value=0.025 Score=32.88 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=62.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC-------------------------CCCE-EECCCC
Q ss_conf 7817997377489999999984799-089971998999999976-------------------------9929-997899
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL-------------------------GIDV-IYGNAT 500 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~-------------------------g~~~-~~gd~~ 500 (609)
+.||+|+|.|-+|..+++.|.+.|. .+.++|.|.-....++++ ..++ .+-+..
T Consensus 11 ~s~V~v~G~GGvGs~~a~~LarsGVG~l~lvD~D~v~~SNLnRQ~~a~~~~iG~~K~~~~~~rl~~iNP~~~v~~~~~~~ 90 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFL 90 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCEEEEEHHHC
T ss_conf 49789988863689999999980997599971999045444433016563369972899999999879998899862515
Q ss_pred CHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 98999848931467999935996899999999999589880899
Q gi|254780924|r 501 ITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIA 544 (609)
Q Consensus 501 ~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia 544 (609)
+++..++.--.+.|.++=++||-..-..+...+++.+ .++|.
T Consensus 91 ~~~n~~~ll~~~~D~VvDaiD~~~~K~~l~~~c~~~~--iplIs 132 (231)
T cd00755 91 TPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK--IPVIS 132 (231)
T ss_pred CHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCC--CEEEE
T ss_conf 9989999845477778534424877999999999829--90899
No 197
>TIGR00773 NhaA Na+/H+ antiporter NhaA; InterPro: IPR004670 The Escherichia coli NhaA Na+:H+ Antiporter (NhaA) protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. ; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane.
Probab=96.46 E-value=0.059 Score=30.29 Aligned_cols=253 Identities=16% Similarity=0.215 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHH----HCCHHH--HHHHHHHHHHHHHHHHHHH-----HHCCCHHH----HHHHHHHHHH
Q ss_conf 9999999988254168899984----151588--9989999999999999999-----96788689----9999999974
Q gi|254780924|r 55 EIGIILLMFGVGLHFSVKDLIS----VRGIAL--PGALIQIILGTALGALMGM-----VMGWSLGG----SVVFGLALSI 119 (609)
Q Consensus 55 ~lgl~~llF~~Gleld~~~l~~----~~~~~~--~~~~~~~~~~~~~~~~~~~-----~lg~~~~~----all~g~~l~~ 119 (609)
+-=.+.....+|+|..-+-+.. .++..+ ..++.|++.|.++=..+.+ --||-.|. |+.+|...=.
T Consensus 59 D~LMAvFFlLiGLEvKrELl~G~L~s~~~A~FP~IAAiGGM~~PaliY~~~n~~dP~~~~GwaIP~ATDIAFALGv~aLL 138 (415)
T TIGR00773 59 DGLMAVFFLLIGLEVKRELLEGALSSLKQAIFPVIAAIGGMIAPALIYLAFNANDPSAREGWAIPAATDIAFALGVLALL 138 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 78999999999889989885210553201035157776356899999999703784100576676077899999999983
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23899998765655411440578989987777899999999998613444330135678999988765321014799999
Q gi|254780924|r 120 ASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMI 199 (609)
Q Consensus 120 ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (609)
+ ++......--.+.-+++||+.++++.++. .+.+-.....
T Consensus 139 g------------krVP~~LKvFLlaLAiiDDLGaiViIALF---Yt~~Ls~~~L------------------------- 178 (415)
T TIGR00773 139 G------------KRVPLALKVFLLALAIIDDLGAIVIIALF---YTSDLSVAAL------------------------- 178 (415)
T ss_pred C------------CCCCHHHHHHHHHHHHHHHCCEEEEEEEE---CCCCHHHHHH-------------------------
T ss_conf 5------------88973689999999998517805887430---0363679999-------------------------
Q ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------
Q ss_conf 998410100001000344543877642035673689999999999999988874110024666664222027--------
Q gi|254780924|r 200 TLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAE-------- 271 (609)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~s~~lgaf~aG~~l~~-------- 271 (609)
........+.....+.-++++ . .+...... .|..-.-.|.+..+++.+.|..++=
T Consensus 179 --~~a~~~~~VL~~LN~~~v~~l--------~--~Y~~vG~~-----LW~aVlkSGvHATlAgVi~gF~IPlK~~~g~~~ 241 (415)
T TIGR00773 179 --LVAAVAILVLALLNRLNVRKL--------I--VYLLVGVI-----LWFAVLKSGVHATLAGVIIGFAIPLKGKKGEKS 241 (415)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH--------H--HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf --999999999999845426778--------8--99999999-----999997301789999999986325678887403
Q ss_pred -------------------------------------CCHHHHHHHHHHHHHHHHH-HHH-HHHHHHHCC-HHHHHHHHH
Q ss_conf -------------------------------------6145689999976689999-999-988653114-798862025
Q gi|254780924|r 272 -------------------------------------SELSQSAAQESLPLRDAFS-VLF-FISVGMMFN-PDILISNPI 311 (609)
Q Consensus 272 -------------------------------------~~~~~~~~~~~~~~~~~~~-~~f-Fv~iG~~l~-~~~l~~~~~ 311 (609)
..+-+++||.+.|...+++ |+| |.-.|.+++ .+.-...-.
T Consensus 242 vellelGkryaetssGallske~~eilhsieekasal~sPl~~lEH~L~p~~ay~ILPLFAFANAGvSl~G~~~~~~~s~ 321 (415)
T TIGR00773 242 VELLELGKRYAETSSGALLSKEQQEILHSIEEKASALQSPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGVSINGLTSM 321 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEHHHHHH
T ss_conf 67877533554321124554677899998886667750636763455505889999788886405702312030235635
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC----------CCCHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Q ss_conf 677776555422122321100025----------587999999864321220-256788988764
Q gi|254780924|r 312 LLMMAVIIVIIGKALIAFIVVIAF----------GRSVATALTIAASLSQIG-EFSFILANLGVE 365 (609)
Q Consensus 312 ~~l~~~~~~~~~k~~~~~~~~~~~----------~~~~~~~~~~g~~l~~~g-~~~~v~a~~a~~ 365 (609)
..+.+....+++||++++..++.+ |.++++=+..|+. +..| +-|.-++..|..
T Consensus 322 l~Lgi~~GL~~GKPlGIf~f~~~a~kL~~a~lP~Gi~f~~I~av~~L-cGIGFTMS~FissLAF~ 385 (415)
T TIGR00773 322 LLLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKHIFAVGVL-CGIGFTMSIFISSLAFG 385 (415)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHCC
T ss_conf 67999998860361468899999997120038898628888999999-50047899999876316
No 198
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.46 E-value=0.02 Score=33.61 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=51.9
Q ss_pred CCCCCE-EEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHC------CHH
Q ss_conf 347817-9973-7748999999998479908997199899999997----6992--999789998999848------931
Q gi|254780924|r 446 DLCDHV-ILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMA------NIE 511 (609)
Q Consensus 446 ~~~~~v-ii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~------~i~ 511 (609)
++++++ +|-| .+.+|+.+++.|.++|.+|++.|.|++..++..+ .|-+ .+.+|.+|++-.+++ ...
T Consensus 6 ~L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ei~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G 85 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 88999899979565999999999998699999997988999999999984599199998369999999999999999959
Q ss_pred HCCEEEEE
Q ss_conf 46799993
Q gi|254780924|r 512 KARSLVVS 519 (609)
Q Consensus 512 ~a~~vi~~ 519 (609)
+.|.+|..
T Consensus 86 ~iDiLVnN 93 (253)
T PRK05867 86 GIDIAVCN 93 (253)
T ss_pred CCCEEEEC
T ss_conf 98599989
No 199
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.42 E-value=0.026 Score=32.78 Aligned_cols=69 Identities=16% Similarity=0.055 Sum_probs=50.8
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC--CCCEEECCCCCHHHHHHC------CHHHCCEEEEE
Q ss_conf 79973-77489999999984799089971998999999976--992999789998999848------93146799993
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL--GIDVIYGNATITKILLMA------NIEKARSLVVS 519 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~--g~~~~~gd~~~~~~l~~~------~i~~a~~vi~~ 519 (609)
++|-| .+-+|+.+++.|.++|.+|++.|.|++..++..++ ....+..|.+|++-.+++ ...+.|.+|-.
T Consensus 8 vlITGassGIG~a~A~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~DVtd~~~v~~~~~~~~~~~G~iDiLVNN 85 (273)
T PRK07825 8 IAITGGARGIGLATARALAALGAKVAIGDLDEALAKESAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNN 85 (273)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 999262339999999999987998999979999999999860785599914799999999999999970997789987
No 200
>PRK08945 short chain dehydrogenase; Provisional
Probab=96.42 E-value=0.062 Score=30.14 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=39.2
Q ss_pred CCCC-EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC---CEEECCC--CCHHH
Q ss_conf 4781-799737-748999999998479908997199899999997----699---2999789--99899
Q gi|254780924|r 447 LCDH-VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI---DVIYGNA--TITKI 504 (609)
Q Consensus 447 ~~~~-vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~---~~~~gd~--~~~~~ 504 (609)
++++ ++|-|. +.+|+.+++.|.++|.+|++++.|++..++..+ .+. .++..|. ++++-
T Consensus 11 L~gK~~lITGas~GIG~aiA~~la~~Ga~Vil~~r~~~~l~~~~~el~~~~~~~~~~~~~d~~~~~~~~ 79 (245)
T PRK08945 11 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLGATEQN 79 (245)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHH
T ss_conf 897989994886189999999999879989999698899999999999747984489994467599999
No 201
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.42 E-value=0.018 Score=33.85 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=55.0
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC----CHHHCCEEEE
Q ss_conf 7997377-489999999984799089971998999999976992999789998999848----9314679999
Q gi|254780924|r 451 VILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA----NIEKARSLVV 518 (609)
Q Consensus 451 vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~----~i~~a~~vi~ 518 (609)
++|-|.+ .+|+.+++.|.++|+.|.....|++..++++..+.+.+..|.+|++..++. .-++.|.+|.
T Consensus 4 ~LVTGas~GIG~a~a~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ldili~ 76 (222)
T PRK06953 4 VLIVGASRGIGLEFVRQYRADGWRVIATARDAAGLAALRALGAEALALDVADPESIAGLGWKLDGEALDAAVY 76 (222)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9994757299999999999888999999688888999884215177740589999999998623677678998
No 202
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.41 E-value=0.063 Score=30.09 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=50.5
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC---EEECCCCCHHHHHHC------CHHHCCE
Q ss_conf 1799737-748999999998479908997199899999997----6992---999789998999848------9314679
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID---VIYGNATITKILLMA------NIEKARS 515 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~---~~~gd~~~~~~l~~~------~i~~a~~ 515 (609)
+++|-|. +-+|+.++++|.++|.+++++|.|++..++..+ .|-+ .+..|.+|++..++. .....|.
T Consensus 2 ~alITGassGIG~a~A~~la~~Ga~v~l~~r~~~~l~~~~~~l~~~g~~~~~~~~~Dvsd~~~v~~~~~~~~~~~g~iDi 81 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHPSMDV 81 (272)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 79994720199999999999889989999898899999999998458971478856689999999999999997299888
Q ss_pred EEEE
Q ss_conf 9993
Q gi|254780924|r 516 LVVS 519 (609)
Q Consensus 516 vi~~ 519 (609)
+|-.
T Consensus 82 LiNN 85 (272)
T PRK07832 82 VMNI 85 (272)
T ss_pred EEEC
T ss_conf 9987
No 203
>KOG1298 consensus
Probab=96.40 E-value=0.0096 Score=35.73 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=34.4
Q ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHH
Q ss_conf 2232134781799737748999999998479908997199899
Q gi|254780924|r 441 TIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKK 483 (609)
Q Consensus 441 ~~~~~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~ 483 (609)
.....+...+|||+|.|-.|..++..|.+.|..|.|||.|-..
T Consensus 38 ~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~E 80 (509)
T KOG1298 38 VEARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSE 80 (509)
T ss_pred HHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 1004687544799888622789999985078579999634556
No 204
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=96.40 E-value=0.032 Score=32.17 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=57.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH--HH
Q ss_conf 7817997377489999999984799089971998999999976992999789998999848931467999935996--89
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA--FE 525 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~--~~ 525 (609)
...+-|+|+|++|+.+++.++..|.+|...|..++.. ..+.+.. +- + +++ -++++|.++++.+-. ..
T Consensus 36 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~--~~~~~~~--~~---~---l~~-ll~~sDii~~~~plt~~T~ 104 (176)
T pfam02826 36 GKTVGIIGLGRIGRAVARRLKAFGMKVIAYDRYPKAE--AEALGAR--YV---S---LDE-LLAESDVVSLHLPLTPETR 104 (176)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCH--HHHCCEE--EC---C---HHH-HHHHCCEEEECCCCCCCCC
T ss_conf 9999998969999999999998398125437987610--2315716--66---8---999-9862998875476742024
Q ss_pred HHHHHHHHHHHCCCCEEEEEE
Q ss_conf 999999999958988089994
Q gi|254780924|r 526 AAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 526 n~~~~~~~~~~~~~~~iia~~ 546 (609)
++.-....+...++..+|-.+
T Consensus 105 ~li~~~~l~~mk~~a~lIN~s 125 (176)
T pfam02826 105 HLINAERLALMKPGAILINTA 125 (176)
T ss_pred CCCCHHHHHHHCCCCEEEEEC
T ss_conf 634699998518998899806
No 205
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.40 E-value=0.02 Score=33.61 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=53.2
Q ss_pred CCCCCCEEE-E-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH----HCCCC--EEECCCCCHHHHHHC------CH
Q ss_conf 134781799-7-3774899999999847990899719989999999----76992--999789998999848------93
Q gi|254780924|r 445 TDLCDHVIL-V-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELR----SLGID--VIYGNATITKILLMA------NI 510 (609)
Q Consensus 445 ~~~~~~vii-~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~----~~g~~--~~~gd~~~~~~l~~~------~i 510 (609)
.++++++.+ - |.+.+|+.+++.|.++|.+|++.|.|++..++.. +.|.+ .+.+|.+|++-.+++ ..
T Consensus 8 f~L~gKvalVTG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~ 87 (259)
T PRK08213 8 FDLTGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWLAADVADEADIERLAEETLERF 87 (259)
T ss_pred HCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 39999989994877689999999999869999999798899999999999549958999826899999999999999983
Q ss_pred HHCCEEEEEC
Q ss_conf 1467999935
Q gi|254780924|r 511 EKARSLVVSI 520 (609)
Q Consensus 511 ~~a~~vi~~~ 520 (609)
.+.|.+|-.-
T Consensus 88 G~iDiLVNNA 97 (259)
T PRK08213 88 GHIDILVNNA 97 (259)
T ss_pred CCCCEEEECC
T ss_conf 9998999899
No 206
>PRK06841 short chain dehydrogenase; Provisional
Probab=96.39 E-value=0.023 Score=33.11 Aligned_cols=75 Identities=23% Similarity=0.266 Sum_probs=53.6
Q ss_pred CCCCCCEEE-EC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC---CCCEEECCCCCHHHHHHC------CHHHC
Q ss_conf 134781799-73-77489999999984799089971998999999976---992999789998999848------93146
Q gi|254780924|r 445 TDLCDHVIL-VG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL---GIDVIYGNATITKILLMA------NIEKA 513 (609)
Q Consensus 445 ~~~~~~vii-~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~---g~~~~~gd~~~~~~l~~~------~i~~a 513 (609)
.++++++++ -| .+-+|+.+++.|.++|.+|++.|.|++..+...+. ....+..|.+|++-.+++ ...+.
T Consensus 11 ~~l~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~d~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~g~i 90 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAAISAFGRI 90 (255)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 58999999997967789999999999879999999698789999998459966999984699999999999999981998
Q ss_pred CEEEEE
Q ss_conf 799993
Q gi|254780924|r 514 RSLVVS 519 (609)
Q Consensus 514 ~~vi~~ 519 (609)
|.+|-.
T Consensus 91 DiLVNN 96 (255)
T PRK06841 91 DILVNS 96 (255)
T ss_pred CEEEEC
T ss_conf 799989
No 207
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=96.39 E-value=0.059 Score=30.29 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=63.1
Q ss_pred CCCEEEECCCHHHHHHHH----HCCCCEEE-CCCCCHHHHHHCCHHHCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEE
Q ss_conf 990899719989999999----76992999-789998999848931467999935996-899999999999589880899
Q gi|254780924|r 471 GIALLVIEDSEKKIEELR----SLGIDVIY-GNATITKILLMANIEKARSLVVSISTA-FEAAYITQEARNSNPSILIIA 544 (609)
Q Consensus 471 ~~~v~vid~~~~~~~~~~----~~g~~~~~-gd~~~~~~l~~~~i~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia 544 (609)
...+.+||+|++..+.+. ..|+++.. .|+ .+.++...-++.|.++.-..=+ ..-..+|...|+.+++.+|+.
T Consensus 3 ~~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~--~~al~~~~~~~~DlvilDi~LP~~~G~~l~~~iR~~~~~~pII~ 80 (229)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERG--LPALDKLRQQPPDLVILDVGLPDISGFELCRQLRAFHPALPVIF 80 (229)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999699999999999999889999998999--99999997189989997388999876889999997089972999
Q ss_pred EECCHHHHHH--HHHCCCC-EEECHH
Q ss_conf 9469899999--9976998-787658
Q gi|254780924|r 545 LADSDSEVEH--LTRYGAD-TVVMSA 567 (609)
Q Consensus 545 ~~~~~~~~~~--l~~~Ga~-~vi~p~ 567 (609)
-+...+..+. -.++||| ++.-|.
T Consensus 81 lta~~~~~d~i~~l~~GADDYl~KPf 106 (229)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPF 106 (229)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 83678989999999759987730874
No 208
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.38 E-value=0.0038 Score=38.55 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=5.1
Q ss_pred EEECCCHHHHHHH
Q ss_conf 9973774899999
Q gi|254780924|r 452 ILVGYGRIGKVIV 464 (609)
Q Consensus 452 ii~G~g~~g~~~~ 464 (609)
+++|+.-..+.+-
T Consensus 160 lvIgADG~~S~vR 172 (391)
T PRK08020 160 LVIGADGANSQVR 172 (391)
T ss_pred EEEEECCCCCHHH
T ss_conf 9999079970544
No 209
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=96.37 E-value=0.026 Score=32.72 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=53.4
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CC--CEEECCCCCHHHHHHC------CHHHCCEEEEEC
Q ss_conf 7997-377489999999984799089971998999999976-99--2999789998999848------931467999935
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GI--DVIYGNATITKILLMA------NIEKARSLVVSI 520 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~--~~~~gd~~~~~~l~~~------~i~~a~~vi~~~ 520 (609)
++|- |.+.+|+.+++.+.++|.+|++.|.+++..+++.++ +. ..+..|.+|++..++. ...+.|.+|-.-
T Consensus 8 alITGgs~GIG~aia~~~a~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~~G~iDiLVnNA 87 (262)
T TIGR03325 8 VLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLIPNA 87 (262)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99906787899999999998799999998998999999986799679998457999999999999999849988899726
No 210
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.36 E-value=0.0079 Score=36.32 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=3.8
Q ss_pred EECCCHHHHHH
Q ss_conf 97377489999
Q gi|254780924|r 453 LVGYGRIGKVI 463 (609)
Q Consensus 453 i~G~g~~g~~~ 463 (609)
++|+.-....+
T Consensus 157 lIgADG~~S~v 167 (386)
T PRK07494 157 VVAADGRNSPA 167 (386)
T ss_pred EEEECCCCCCC
T ss_conf 99905888743
No 211
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=96.35 E-value=0.034 Score=31.94 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=68.5
Q ss_pred HCCCCEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEE
Q ss_conf 47990899719989999999----7699299978999899984893146799993599-689999999999958988089
Q gi|254780924|r 469 AAGIALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSNPSILII 543 (609)
Q Consensus 469 ~~~~~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~~~~~ii 543 (609)
++.+++.+||+|++..+.+. ++|+++...+ +-.+.++...-++.|.++.-..= +......|...|+.+++.+||
T Consensus 3 ~~~~kILiVEDd~~~~~~l~~~L~~~g~~v~~a~-~~~~a~~~~~~~~~DlvilDi~lp~~dG~~l~~~iR~~~~~~pII 81 (239)
T PRK09468 3 QENYKILVVDDDMRLRALLERYLTEQGFQVRSAA-NAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPII 81 (239)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEE
T ss_conf 9897899990999999999999998899999989-999999999758998999878998888734677787505787789
Q ss_pred EEECCHHHHHH--HHHCCCCEEECHHH
Q ss_conf 99469899999--99769987876589
Q gi|254780924|r 544 ALADSDSEVEH--LTRYGADTVVMSAR 568 (609)
Q Consensus 544 a~~~~~~~~~~--l~~~Ga~~vi~p~~ 568 (609)
.-+...+..+. -.+.|||.-+...+
T Consensus 82 ~LTa~~~~~d~i~~l~~GADDYi~KPf 108 (239)
T PRK09468 82 MLTAKGEEVDRIVGLEMGADDYLPKPF 108 (239)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 994667878999999769868855899
No 212
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.34 E-value=0.069 Score=29.82 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=63.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHH-------------------HH----HHHHHC--C--CCEEE
Q ss_conf 1347817997377489999999984799-0899719989-------------------99----999976--9--92999
Q gi|254780924|r 445 TDLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEK-------------------KI----EELRSL--G--IDVIY 496 (609)
Q Consensus 445 ~~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~-------------------~~----~~~~~~--g--~~~~~ 496 (609)
.=.+.+|+|+|.|-.|..++..|...|. ++.++|.|.- ++ +++++. . +..+.
T Consensus 18 ~L~~s~VlivG~GGlGs~~~~~La~~Gvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~K~~~a~~~l~~iNp~i~i~~~~ 97 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HHHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHEECHHHCCCCHHHHHHHHHHHHCCCCCCEEHH
T ss_conf 98649789988778899999999983997589997874556764221023786687895999999998548875303132
Q ss_pred CCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 789998999848931467999935996899999999999589880899
Q gi|254780924|r 497 GNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIA 544 (609)
Q Consensus 497 gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia 544 (609)
...+. +-+++. +++.|.++-++||.+.-..+-..+.+.+ .+-|.+
T Consensus 98 ~~i~~-~~~~~~-~~~~DlVid~~Dn~~~R~~ln~~~~~~~-iP~i~g 142 (228)
T cd00757 98 ERLDA-ENAEEL-IAGYDLVLDCTDNFATRYLINDACVKLG-KPLVSG 142 (228)
T ss_pred HCCCH-HHHHHH-HHCCCEEEECCCCHHHHHHHHHHHHHCC-CCEEEE
T ss_conf 10057-569988-7379899987799889999999999839-988999
No 213
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.041 Score=31.43 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=56.0
Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECC
Q ss_conf 9973774899999999847990899719989999999769929997899989998489314679999359
Q gi|254780924|r 452 ILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIS 521 (609)
Q Consensus 452 ii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~ 521 (609)
+.=|-|.+|+.+++.|.++|++|++.-.|++...... .+.++..+|..+++.+..+--. .+.++.+.+
T Consensus 5 V~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~~~~G-~~~~~~i~~ 72 (275)
T COG0702 5 VTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKG-VDGVLLISG 72 (275)
T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHCC-CCCEEECCCCCCCHHHHHHHCC-CEEEEEECC
T ss_conf 9867775799999999975986999736822111103-7852884564160779998489-417999525
No 214
>pfam01758 SBF Sodium Bile acid symporter family. This family consists of Na+/bile acid co-transporters. These transmembrane proteins function in the liver in the uptake of bile acids from portal blood plasma a process mediated by the co-transport of Na+. Also in the family is ARC3 from S. cerevisiae; this is a putative transmembrane protein involved in resistance to arsenic compounds.
Probab=96.33 E-value=0.07 Score=29.80 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999988254168899984151---5889989999999999999999-96788689999999997423899
Q gi|254780924|r 56 IGIILLMFGVGLHFSVKDLISVRG---IALPGALIQIILGTALGALMGM-VMGWSLGGSVVFGLALSIASTVV 124 (609)
Q Consensus 56 lgl~~llF~~Gleld~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~lg~~~~~all~g~~l~~ts~~v 124 (609)
+++.++||-.|++++++++++..| .....-..+.++.=..++..++ +++.+. ++.+|.++..+.|.-
T Consensus 2 i~L~~mMf~mgl~l~~~d~~~~~~~Pk~~~~gl~~q~ii~Pllaf~l~~~~~~~~~--~~~~Glil~~~~Pgg 72 (188)
T pfam01758 2 LGLFLMMFSMGLKVRYEDFKELFRRPKALLLGLLLQWVIMPLLMFILAWFLLRLPP--ELAVGLILVGCAPGG 72 (188)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHCCCCC
T ss_conf 62499888562575399999998181999999999999999999999999937988--899888962107864
No 215
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=96.33 E-value=0.048 Score=30.94 Aligned_cols=52 Identities=25% Similarity=0.456 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC
Q ss_conf 1222321347817997377489999999984799-089971998999999976
Q gi|254780924|r 439 EVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL 490 (609)
Q Consensus 439 ~~~~~~~~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~ 490 (609)
..+.+++=...||+|+|.|-.|..++..|-..|. .+.++|.|.-....+.++
T Consensus 12 G~eGQ~rL~~s~VLiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~V~~SNLqRQ 64 (210)
T TIGR02356 12 GEEGQQRLLASHVLIIGAGGLGSPAALYLAAAGVGTITIVDDDHVDLSNLQRQ 64 (210)
T ss_pred CHHHHHHHHHCCEEEEEECHHHHHHHHHHHHCCCCEEEEEECCEECHHHCHHH
T ss_conf 56899998608659997261456899999828883789985167701012055
No 216
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=96.31 E-value=0.072 Score=29.71 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=65.1
Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHH
Q ss_conf 781799737-7489999999984799089971998999999976992999789998999848931467999935996899
Q gi|254780924|r 448 CDHVILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEA 526 (609)
Q Consensus 448 ~~~vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n 526 (609)
.+.|+|.|. |.+|....+.++..|.++..++.++++.+.+++.+.+++..+..+++. ++ +..+|.++-+++.+..
T Consensus 163 g~~VlI~Ga~G~vG~~aiqlak~~Ga~vi~v~~~~~k~~~~~~~~~~~i~~~~~~~~~-~~--~~g~Dvvid~~G~~~~- 238 (332)
T PRK13771 163 GETVLVTGAGGGVGIHAVQVAKAYGAKVIAVTTSESKAKAVGKYADYVIVGSKFSEEV-KK--LGGADIVIETVGGPTL- 238 (332)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECCCHHHHH-HH--CCCCCEEEECCCHHHH-
T ss_conf 9999997787758999999999869989999499999999985699898363057888-73--4686389845766889-
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999995898808999
Q gi|254780924|r 527 AYITQEARNSNPSILIIAL 545 (609)
Q Consensus 527 ~~~~~~~~~~~~~~~iia~ 545 (609)
-...+...+..+++..
T Consensus 239 ---~~~~~~l~~~G~iv~~ 254 (332)
T PRK13771 239 ---EESLRSLNWGGKIVLI 254 (332)
T ss_pred ---HHHHHHHCCCCEEEEE
T ss_conf ---9888862589699999
No 217
>PRK11749 putative oxidoreductase; Provisional
Probab=96.31 E-value=0.021 Score=33.41 Aligned_cols=49 Identities=18% Similarity=0.397 Sum_probs=36.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEC--------CCHHHHHHHHHCCCCEE
Q ss_conf 478179973774899999999847990-89971--------99899999997699299
Q gi|254780924|r 447 LCDHVILVGYGRIGKVIVQNLKAAGIA-LLVIE--------DSEKKIEELRSLGIDVI 495 (609)
Q Consensus 447 ~~~~vii~G~g~~g~~~~~~L~~~~~~-v~vid--------~~~~~~~~~~~~g~~~~ 495 (609)
.-.+|+|+|.|.++-..++.+.+.|.+ |.++- .+++.++.+.++|++..
T Consensus 275 ~Gk~VvVIGgGnvA~D~Arta~r~GA~~V~vv~rr~~~~mpa~~~Ei~~A~~eGv~~~ 332 (460)
T PRK11749 275 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFV 332 (460)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCHHHHHHHHHCCEEEE
T ss_conf 4874899898466999899999828984633000752009989999998874570888
No 218
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.31 E-value=0.072 Score=29.70 Aligned_cols=96 Identities=11% Similarity=0.226 Sum_probs=59.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHC--C------CC-EEECCCCCHHHHHHCCHHHCCEEEE
Q ss_conf 17997377489999999984799--089971998999999976--9------92-9997899989998489314679999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSL--G------ID-VIYGNATITKILLMANIEKARSLVV 518 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~--g------~~-~~~gd~~~~~~l~~~~i~~a~~vi~ 518 (609)
.|.|+|.|.+|..++-.|..++. +++++|.|++..+.-..+ + .+ .+.++.+.+ .+.+||.++.
T Consensus 2 KI~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~------~~~daDiVVi 75 (312)
T PRK06223 2 KISIIGAGNVGATLAHLLALKELGKDVVLFDIPEGIPQGKALDIAESSAVDGFDAKITGTNDYA------DIAGSDVVII 75 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCHH------HHCCCCEEEE
T ss_conf 7999996989999999998579987489976999733679888765143368884798378889------9579999999
Q ss_pred ECC---------CH--HHHH----HHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 359---------96--8999----9999999958988089994698999
Q gi|254780924|r 519 SIS---------TA--FEAA----YITQEARNSNPSILIIALADSDSEV 552 (609)
Q Consensus 519 ~~~---------~~--~~n~----~~~~~~~~~~~~~~iia~~~~~~~~ 552 (609)
+-+ .| +.|. .++...++.+|+.. +..+.||-+.
T Consensus 76 tag~~rk~g~tR~dll~~N~~I~k~i~~~i~~~~p~~i-ilvvsNPvDv 123 (312)
T PRK06223 76 TAGVPRKPGMSRDDLLGINAKIMKDVGEGIKKYAPDAI-VIVITNPVDA 123 (312)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEECCCHHH
T ss_conf 06778999988689999878999999999984099818-9993693689
No 219
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.30 E-value=0.072 Score=29.70 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=64.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----CCCEEECCCCCHH---HHHH-------CCHHH
Q ss_conf 7817997377489999999984799089971998999999976-----9929997899989---9984-------89314
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----GIDVIYGNATITK---ILLM-------ANIEK 512 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~---~l~~-------~~i~~ 512 (609)
-.+|-|+|.|.+|..+|..+...|++|++.|.|++.+++..+. .-.+-.|..+..+ .+.+ .++.+
T Consensus 313 i~~v~ViGaG~MG~GIA~~~a~aG~~V~l~D~~~e~l~~g~~~~~~~~~~~v~~g~~~~~~~~~~l~ri~~~~~~~~l~~ 392 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMNEAAKLLNKQVERGRIDGLKMAGVLSTITPTLDYAGFKD 392 (715)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHCC
T ss_conf 62799978771079999999957995799978999999999999999999986489987999999956874154024335
Q ss_pred CCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 67999935996-8999999999995898808999469
Q gi|254780924|r 513 ARSLVVSISTA-FEAAYITQEARNSNPSILIIALADS 548 (609)
Q Consensus 513 a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~ 548 (609)
+|.||=+...+ +.-..+-....+.-+.-.|++.-++
T Consensus 393 ~DlVIEAV~E~l~~K~~vf~~l~~~~~~~aIlAsNTS 429 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTS 429 (715)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 8889985436588999999999865587538851576
No 220
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.28 E-value=0.026 Score=32.80 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=53.0
Q ss_pred CCCCC-EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHCC------HH
Q ss_conf 34781-79973-7748999999998479908997199899999997----6992--9997899989998489------31
Q gi|254780924|r 446 DLCDH-VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMAN------IE 511 (609)
Q Consensus 446 ~~~~~-vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~~------i~ 511 (609)
+++++ ++|.| .+-+|+.+++.|.++|.+|++.|.|++..++..+ .|.+ .+.+|.+|++..+++- ..
T Consensus 11 ~L~gK~alITGgs~GIG~~ia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 90 (259)
T PRK06124 11 SLAGQVALVTGSARGLGLEIARALAEAGAHVLVNGRNAARVEAAVAALRAAGGAAEALVFDISDEEAVAAAFARIDAEHG 90 (259)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99999899928674899999999998799999996988999999999996599589999517999999999999999759
Q ss_pred HCCEEEEECC
Q ss_conf 4679999359
Q gi|254780924|r 512 KARSLVVSIS 521 (609)
Q Consensus 512 ~a~~vi~~~~ 521 (609)
+.|.+|-.-+
T Consensus 91 ~iDiLVnnAG 100 (259)
T PRK06124 91 RLDILVNNVG 100 (259)
T ss_pred CCCEEEECCC
T ss_conf 9979998988
No 221
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=96.26 E-value=0.029 Score=32.47 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=51.9
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CC--CEEECCCCCHHHHHHC------CHHHCCEEEEE
Q ss_conf 799737-7489999999984799089971998999999976-99--2999789998999848------93146799993
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GI--DVIYGNATITKILLMA------NIEKARSLVVS 519 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~--~~~~gd~~~~~~l~~~------~i~~a~~vi~~ 519 (609)
++|-|. +.+|+.+++.|.++|.+|++.|.|++..++..++ |. ..+..|.+|++-.+++ ...+.|.+|-.
T Consensus 8 alVTGas~GIG~aia~~la~~Ga~V~i~d~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVNN 86 (256)
T PRK07067 8 ALLTGAASGIGEAVAQRYLREGARVVLADIKPARAALAALEIGPAAVAVSLDVTRQDSIDRIVAAAVERFGGIDILVNN 86 (256)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 9993767789999999999879999999798899999999819975999984899999999999999981999899989
No 222
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.25 E-value=0.019 Score=33.72 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=61.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHC---C------CCEEECCCCCHHHHHHCCHHHCCE
Q ss_conf 47817997377489999999984799--089971998999999976---9------929997899989998489314679
Q gi|254780924|r 447 LCDHVILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSL---G------IDVIYGNATITKILLMANIEKARS 515 (609)
Q Consensus 447 ~~~~vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~---g------~~~~~gd~~~~~~l~~~~i~~a~~ 515 (609)
.++.|-|+|.|.+|..+|-.|..++. +++++|.|++..+--..+ + ..+..|| ++ .+.++|.
T Consensus 5 k~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiD~~~~~a~g~a~Dl~h~~~~~~~~~i~~gd------y~--~~~daDv 76 (315)
T PRK00066 5 KHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGD------YS--DCKDADL 76 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC------HH--HHCCCCE
T ss_conf 898499999798899999999866998889998089871078999888541236884797399------99--9679999
Q ss_pred EEEECCC---------H--HHHHHH----HHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 9993599---------6--899999----99999958988089994698999
Q gi|254780924|r 516 LVVSIST---------A--FEAAYI----TQEARNSNPSILIIALADSDSEV 552 (609)
Q Consensus 516 vi~~~~~---------~--~~n~~~----~~~~~~~~~~~~iia~~~~~~~~ 552 (609)
+|.+-+. | +.|..+ +...++++|+.. +..+.||-+.
T Consensus 77 VVitAG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~~p~~i-~ivvtNPvDv 127 (315)
T PRK00066 77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGI-FLVASNPVDI 127 (315)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEECCCHHH
T ss_conf 99899998999998789998789999998877642488539-9993691899
No 223
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.25 E-value=0.053 Score=30.63 Aligned_cols=107 Identities=18% Similarity=0.086 Sum_probs=62.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCC---C--EEECCC--CCHHHHH-----HCCHHHCCEE
Q ss_conf 81799737748999999998479908997199899999997699---2--999789--9989998-----4893146799
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGI---D--VIYGNA--TITKILL-----MANIEKARSL 516 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~---~--~~~gd~--~~~~~l~-----~~~i~~a~~v 516 (609)
++|-|+|.|.+|...+..+..+|++|++.|.+++..+++++.-. + .-.|.. .+++-++ +.-++++|.|
T Consensus 8 k~VaVIGaG~MG~giAa~~a~~G~~V~l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~l~~av~~aD~V 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHCCCCEE
T ss_conf 87999888788899999999479859999698889999999999999999866899631696501468889986359989
Q ss_pred EEECCCH-HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 9935996-89999999999958988089994698999999
Q gi|254780924|r 517 VVSISTA-FEAAYITQEARNSNPSILIIALADSDSEVEHL 555 (609)
Q Consensus 517 i~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~~~~~~~~l 555 (609)
+=+.+.+ +.-..+-....+..+.-.|++..++.-....+
T Consensus 88 iEavpE~l~lK~~lf~~ld~~~~~~aIiASnTS~l~is~l 127 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDF 127 (321)
T ss_pred EECCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH
T ss_conf 9877665999999999999767988678525765789999
No 224
>PRK05855 short chain dehydrogenase; Validated
Probab=96.24 E-value=0.078 Score=29.48 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHC
Q ss_conf 11222321347817997--37748999999998479908997199899999997----6992--999789998999848
Q gi|254780924|r 438 QEVTIQKTDLCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMA 508 (609)
Q Consensus 438 ~~~~~~~~~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~ 508 (609)
.+........++++.++ +.+-+|+.+|..|.++|.+|++.|.|++..++..+ .|.. .+..|.+|++-.+++
T Consensus 304 ~~~~~~~~rFsGKvAvVTGA~sGIGrA~A~~fA~~GA~Vvl~Dr~~~~l~eta~ei~~~G~~a~~~~~DVtd~~av~al 382 (582)
T PRK05855 304 ARVGRPRGRFGGKLVVVTGAGSGIGRATALAFAREGAEVVASDIDEAAAERTAALIRAAGAVAHAYRVDVSDADAMEAL 382 (582)
T ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf 5458998874995899958757899999999997799999960799999999999995198489997558999999999
No 225
>PRK09422 alcohol dehydrogenase; Provisional
Probab=96.24 E-value=0.078 Score=29.48 Aligned_cols=93 Identities=13% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCEEEECCCHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHHHCCCCEEEC--CCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 817997377489999999984-7990899719989999999769929997--8999899984893146799993599689
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKA-AGIALLVIEDSEKKIEELRSLGIDVIYG--NATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~-~~~~v~vid~~~~~~~~~~~~g~~~~~g--d~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
+.++|.|.|.+|...++...+ .+.++.++|.|+++.+.+++.|.+.+.- +..+.+-..+.--...+.++....+.+.
T Consensus 164 ~~VlV~GaGgvG~~aiq~ak~~~g~~Vi~~~~~~~k~~~a~~lGad~vi~~~~~~~~~~~~~~~~gg~~~~v~~~~~~~~ 243 (338)
T PRK09422 164 QWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVAKAA 243 (338)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf 88999688689999999999808986999989999999999729989981887434999999950997769996787899
Q ss_pred HHHHHHHHHHHCCCCEEEE
Q ss_conf 9999999999589880899
Q gi|254780924|r 526 AAYITQEARNSNPSILIIA 544 (609)
Q Consensus 526 n~~~~~~~~~~~~~~~iia 544 (609)
-.... +...+..+++.
T Consensus 244 ~~~~~---~~l~~gG~~v~ 259 (338)
T PRK09422 244 FNQAV---DAVRAGGRVVA 259 (338)
T ss_pred HHHHH---HHHHCCCEEEE
T ss_conf 99999---98116999999
No 226
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.24 E-value=0.025 Score=32.93 Aligned_cols=70 Identities=27% Similarity=0.349 Sum_probs=53.0
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-C--CCEEECCCCCHHHHHHC------CHHHCCEEEEEC
Q ss_conf 79973-77489999999984799089971998999999976-9--92999789998999848------931467999935
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-G--IDVIYGNATITKILLMA------NIEKARSLVVSI 520 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g--~~~~~gd~~~~~~l~~~------~i~~a~~vi~~~ 520 (609)
++|-| .+.+|+.+++.|.++|.+|.+.|.|++..+++.++ + ...+.+|.+|++..+++ ...+.|.+|-+-
T Consensus 9 alVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~iDiLVnnA 88 (263)
T PRK06200 9 ALITGGGSGIGRALVERFLAEGARVAVLERSAEKCASLRQRFGDDVLVVEGDVTSYADNQRAVAQTVDRFGKLDCFVGNA 88 (263)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99958667999999999998799999997999999999998188646871799999999999999999849988899757
No 227
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.24 E-value=0.078 Score=29.46 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=37.0
Q ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCE-EECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 99999999847990899719989999999769929-997899989998489314679999359968999
Q gi|254780924|r 460 GKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDV-IYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 460 g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~-~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
...+.+.|.++|.+|.+-|.. ..++.+...-++ +..|+ .++ ++++|.++++|+.++-..
T Consensus 332 a~~vi~~L~~~Ga~V~aYDP~--a~~~~~~~~~~~~~~~~~--~~~-----~~~aDaivi~tew~ef~~ 391 (414)
T COG1004 332 ALDIIKRLQEKGAEVIAYDPV--AMENAFRNFPDVELESDA--EEA-----LKGADAIVINTEWDEFRD 391 (414)
T ss_pred HHHHHHHHHHCCCEEEEECCH--HHHHHHHCCCCCEEECCH--HHH-----HHHCCEEEEECCHHHHHC
T ss_conf 799999999779989997825--437777307871674899--999-----840989999555798755
No 228
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.23 E-value=0.028 Score=32.50 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=51.4
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 7997-37748999999998479908997199899999997----6992--999789998999848------931467999
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|- |.+.+|+.+++.|.++|.+|.+.|.|++..++..+ .|.+ .+.+|.+|++..+++ ...+.|.+|
T Consensus 9 alVTGgs~GiG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~fG~iDilV 88 (250)
T PRK07774 9 AIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADRTVSAFGGIDYLV 88 (250)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99979768899999999998699999997988999999999985598499998258999999999999999839998999
Q ss_pred EE
Q ss_conf 93
Q gi|254780924|r 518 VS 519 (609)
Q Consensus 518 ~~ 519 (609)
-.
T Consensus 89 Nn 90 (250)
T PRK07774 89 NN 90 (250)
T ss_pred EC
T ss_conf 88
No 229
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=96.22 E-value=0.0074 Score=36.50 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=10.5
Q ss_pred EEECCCHHHHHHHHHH
Q ss_conf 9973774899999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQNL 467 (609)
Q Consensus 452 ii~G~g~~g~~~~~~L 467 (609)
+++|+.-.-+.+-+.+
T Consensus 153 lvIgADG~~S~vR~~l 168 (349)
T pfam01494 153 YLVGCDGGRSPVRKQL 168 (349)
T ss_pred EEECCCCCCCHHHHHC
T ss_conf 8841577764899975
No 230
>PRK07608 hypothetical protein; Provisional
Probab=96.21 E-value=0.0045 Score=37.98 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=7.9
Q ss_pred EEECCCHHHHHHHHHH
Q ss_conf 9973774899999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQNL 467 (609)
Q Consensus 452 ii~G~g~~g~~~~~~L 467 (609)
+++|+.-.-+.+-+.+
T Consensus 159 llVgADG~~S~vR~~~ 174 (389)
T PRK07608 159 LVVGADGAHSWVRSQA 174 (389)
T ss_pred EEEEECCCCHHHHHHC
T ss_conf 8999669976888741
No 231
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.21 E-value=0.036 Score=31.80 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=53.7
Q ss_pred CCCCC-EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC---CCCEEECCCCCHHHHHHC------CHHHCC
Q ss_conf 34781-799737-7489999999984799089971998999999976---992999789998999848------931467
Q gi|254780924|r 446 DLCDH-VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL---GIDVIYGNATITKILLMA------NIEKAR 514 (609)
Q Consensus 446 ~~~~~-vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~---g~~~~~gd~~~~~~l~~~------~i~~a~ 514 (609)
+++++ ++|-|. +-+|+.+++.|.++|.+|++.|.|++..++..++ ....+..|.+|++-.+++ ...+.|
T Consensus 6 ~L~gK~alVTG~s~GIG~aiA~~la~~Ga~Vvi~~r~~~~l~~~~~~l~~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iD 85 (251)
T PRK07523 6 DLTGRRALITGSSQGIGYALAKGLAQAGAEVILNGRDAAKLAAAAESLKGSAHTLAFDVTDHDAVRAAIDAFEAEIGPID 85 (251)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 68999899958366999999999998799999996998999999998188727999957999999999999999759986
Q ss_pred EEEEEC
Q ss_conf 999935
Q gi|254780924|r 515 SLVVSI 520 (609)
Q Consensus 515 ~vi~~~ 520 (609)
.+|-.-
T Consensus 86 iLVNNA 91 (251)
T PRK07523 86 ILVNNA 91 (251)
T ss_pred EEEECC
T ss_conf 999898
No 232
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.20 E-value=0.02 Score=33.61 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=59.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHC--------CCCEEECCCCCHHHHHHCCHHHCCEEEEE
Q ss_conf 17997377489999999984799--089971998999999976--------99299978999899984893146799993
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSL--------GIDVIYGNATITKILLMANIEKARSLVVS 519 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~--------g~~~~~gd~~~~~~l~~~~i~~a~~vi~~ 519 (609)
.|-|+|.|++|..++-.|..++. +++++|.|++..+-...+ +.++..... |.+ .+.++|.+|++
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~G~a~DL~~~~~~~~~~~~i~~~-~~~-----~~~~aDvvVit 75 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAG-DYS-----DCKDADIVVIT 75 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEC-CHH-----HHCCCCEEEEC
T ss_conf 599999698899999999857998779998189870176999887013305997399608-878-----84789999990
Q ss_pred CCC---------H--HHHHH----HHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 599---------6--89999----999999958988089994698999
Q gi|254780924|r 520 IST---------A--FEAAY----ITQEARNSNPSILIIALADSDSEV 552 (609)
Q Consensus 520 ~~~---------~--~~n~~----~~~~~~~~~~~~~iia~~~~~~~~ 552 (609)
-+. | +.|.. ++...++.+|+..+ ..+.||-+.
T Consensus 76 AG~~rk~g~~R~dLl~~N~~I~k~i~~~i~~~~p~aiv-ivvtNPvDv 122 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIF-LVASNPVDV 122 (306)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEECCCHHH
T ss_conf 67667999987899997899999999998722997189-993581678
No 233
>PRK08251 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.027 Score=32.66 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=52.9
Q ss_pred CCCEEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----C--CCC--EEECCCCCHHHHHHC------CHHH
Q ss_conf 7817997377-48999999998479908997199899999997----6--992--999789998999848------9314
Q gi|254780924|r 448 CDHVILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----L--GID--VIYGNATITKILLMA------NIEK 512 (609)
Q Consensus 448 ~~~vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~--g~~--~~~gd~~~~~~l~~~------~i~~ 512 (609)
+..|+|-|.+ .+|+.+|++|.++|+++.+++.|+++.+++.+ + +.+ .+..|.+|++-.+++ ...+
T Consensus 2 ~K~vlITGAssGIG~alA~~la~~G~~v~l~~r~~~~l~~~~~el~~~~~~~~v~~~~~Dvsd~~~v~~~~~~~~~~~g~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFSDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99899947863999999999998799899998988899999999987379973999978678689999999999998099
Q ss_pred CCEEEEE
Q ss_conf 6799993
Q gi|254780924|r 513 ARSLVVS 519 (609)
Q Consensus 513 a~~vi~~ 519 (609)
.|.+|..
T Consensus 82 iD~lvnN 88 (248)
T PRK08251 82 LDRVIVN 88 (248)
T ss_pred CCEEEEC
T ss_conf 9899985
No 234
>PRK08774 consensus
Probab=96.20 E-value=0.0041 Score=38.29 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=6.2
Q ss_pred EEECCCHHHHHHHHH
Q ss_conf 997377489999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQN 466 (609)
Q Consensus 452 ii~G~g~~g~~~~~~ 466 (609)
.++|++-....+-+.
T Consensus 161 llVgADG~~S~vR~~ 175 (402)
T PRK08774 161 LVVGADGSHSAVREL 175 (402)
T ss_pred EEEECCCCCCCCHHH
T ss_conf 999958998452312
No 235
>PRK07576 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.03 Score=32.32 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=50.7
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH----HCCCCE--EECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 79973-774899999999847990899719989999999----769929--99789998999848------931467999
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELR----SLGIDV--IYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~----~~g~~~--~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|.| .+.+|+.+++.|.++|.+|++.|.|++..++.. +.+.++ +.+|.+|++..+++ ...+.|.+|
T Consensus 11 alVTGgs~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~iDiLV 90 (260)
T PRK07576 11 VFVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEALGVSADVRDYAAVEAAFAAIADEFGPIDVLV 90 (260)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99958961999999999998799999997988999999999995399489999318999999999999999849998999
Q ss_pred EE
Q ss_conf 93
Q gi|254780924|r 518 VS 519 (609)
Q Consensus 518 ~~ 519 (609)
..
T Consensus 91 nn 92 (260)
T PRK07576 91 SG 92 (260)
T ss_pred EC
T ss_conf 89
No 236
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.20 E-value=0.062 Score=30.14 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEE
Q ss_conf 222321347817997377489999999984799089971998999999976-9929997899989998489314679999
Q gi|254780924|r 440 VTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVV 518 (609)
Q Consensus 440 ~~~~~~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~ 518 (609)
....+--.+.+|.|+|+|-+|.+-++-....|-+|.++|.|.++.+.+.+. +.++..- .+++..+++ .+.++|.+|-
T Consensus 160 lgGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~-~st~~~iee-~v~~aDlvIg 237 (371)
T COG0686 160 LGGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTL-YSTPSNIEE-AVKKADLVIG 237 (371)
T ss_pred ECCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCEEEEE-ECCHHHHHH-HHHHCCEEEE
T ss_conf 43778987760899877612406999972368706999527788764067657666999-758999998-7431267988
Q ss_pred EC---CCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 35---99689999999999958988089994
Q gi|254780924|r 519 SI---STAFEAAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 519 ~~---~~~~~n~~~~~~~~~~~~~~~iia~~ 546 (609)
+. +.+.-.+..-+..|++-|..-|+-.+
T Consensus 238 aVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 238 AVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEECCCCCCEEHHHHHHHHCCCCCEEEEEE
T ss_conf 8884588786010699997447985899998
No 237
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.19 E-value=0.031 Score=32.26 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=59.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECC
Q ss_conf 79973774899999999847990899719989999999769929997899989998489314679999359
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIS 521 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~ 521 (609)
.||+--|+.|..+.++..++|++|+.|-.|+.+.... ++..+...|..|++.+. ..+..-|.||.+.+
T Consensus 4 aiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~a-~~l~g~DaVIsA~~ 71 (211)
T COG2910 4 AIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSLA-SDLAGHDAVISAFG 71 (211)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEEECHHHCCCC--CCCEEECCCCCCHHHHH-HHHCCCCEEEEECC
T ss_conf 8995374567999999986798048998076766522--35302000222745667-66358766997215
No 238
>pfam03601 Cons_hypoth698 Conserved hypothetical protein 698.
Probab=96.19 E-value=0.082 Score=29.31 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 1002466666422202761--4568999997668999999998865311479886202567777-655542212232110
Q gi|254780924|r 255 GVSLSLGAFFAGMILAESE--LSQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMA-VIIVIIGKALIAFIV 331 (609)
Q Consensus 255 g~s~~lgaf~aG~~l~~~~--~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~-~~~~~~~k~~~~~~~ 331 (609)
+.++.+-|.+.|+.++|.. ..+..+.-++--...+.-+==+..|.+++++.+.+..+..+.. .......-..+.|.+
T Consensus 24 ~lg~~~~AillGi~l~n~~~~~~~~~~~Gi~f~~k~~Lr~gIvLlG~~l~~~~i~~~G~~~~~~~~~~v~~t~~~~~~lg 103 (305)
T pfam03601 24 HLGALTLAIVLGMLLGNLFLGLQEQLKAGVLFSSKKLLRLGIVLYGFRLTLSDIAAVGLKGVLIDAIVLISTFLLVLFLG 103 (305)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40399999999999963045880754238988899899999999673517999998737899999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHH
Q ss_conf 002558799999986432
Q gi|254780924|r 332 VIAFGRSVATALTIAASL 349 (609)
Q Consensus 332 ~~~~~~~~~~~~~~g~~l 349 (609)
.+..|.+++.+..++.+-
T Consensus 104 ~r~~~l~~~~~~Lia~Gt 121 (305)
T pfam03601 104 QRLLGLDKNLALLLAAGS 121 (305)
T ss_pred HHHHCCCHHHHHHHHCCC
T ss_conf 998499787899998564
No 239
>PRK08267 short chain dehydrogenase; Provisional
Probab=96.19 E-value=0.083 Score=29.29 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=51.3
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC----CCCEEECCCCCHHHHHHC--C-H----HHCCEEEE
Q ss_conf 799737-7489999999984799089971998999999976----992999789998999848--9-3----14679999
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL----GIDVIYGNATITKILLMA--N-I----EKARSLVV 518 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~----g~~~~~gd~~~~~~l~~~--~-i----~~a~~vi~ 518 (609)
++|-|. +-+|+.+++.|.++|.+|++.|.|++..+++.++ ....+..|.+|++-++++ . . .+.|.+|-
T Consensus 4 vlITGassGIG~a~A~~~a~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~~G~iDiLVN 83 (258)
T PRK08267 4 IFITGAASGIGRATARLFAARGWRVGAYDINEDGLAALAAELGAERAWTGALDVTDRAAWDAALADFCAATGGRLDVLFN 83 (258)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99907226899999999998799999998889999999998369967999911799999999999999995899868998
Q ss_pred E
Q ss_conf 3
Q gi|254780924|r 519 S 519 (609)
Q Consensus 519 ~ 519 (609)
.
T Consensus 84 N 84 (258)
T PRK08267 84 N 84 (258)
T ss_pred C
T ss_conf 8
No 240
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.18 E-value=0.041 Score=31.36 Aligned_cols=70 Identities=20% Similarity=0.353 Sum_probs=52.3
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEEC-CCHHHHHHHHHCCCCEEECCCCCHHHHHHC------CHHHCCEEEEEC
Q ss_conf 7997-377489999999984799089971-998999999976992999789998999848------931467999935
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIE-DSEKKIEELRSLGIDVIYGNATITKILLMA------NIEKARSLVVSI 520 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid-~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~------~i~~a~~vi~~~ 520 (609)
++|- |.+.+|+.+++.|.++|.+|++.+ .+++..+++++.+...+.+|.+|++-.+++ ...+.|.+|-.-
T Consensus 10 alVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVNNA 87 (254)
T PRK06463 10 ALITGGSRGIGRAIAEKFLKEGAKVAILYNSSEDKAKELKEKGVETFKCDVSNRDQVRKAKEEIHKKLGRIDVLVNNA 87 (254)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 999484778999999999988999999649978999999866988999738999999999999999829998999899
No 241
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=96.18 E-value=0.049 Score=30.88 Aligned_cols=70 Identities=23% Similarity=0.307 Sum_probs=53.5
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-C--CCEEECCCCCHHHHHHC------CHHHCCEEEEEC
Q ss_conf 79973-77489999999984799089971998999999976-9--92999789998999848------931467999935
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-G--IDVIYGNATITKILLMA------NIEKARSLVVSI 520 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g--~~~~~gd~~~~~~l~~~------~i~~a~~vi~~~ 520 (609)
++|-| .+.+|+.+++.|.++|..|.+.|.|++.+++..++ + ...+.+|.+|++-.++. ...+.|.+|-+-
T Consensus 9 alITG~s~GIG~aia~~~a~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLINnA 88 (245)
T PRK12936 9 ALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDILVNNA 88 (245)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99927476899999999998699999982999999999998389669999137999999999999999759996999899
No 242
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.18 E-value=0.03 Score=32.34 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=49.0
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHH----HCCC--CEEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 7997377-4899999999847990899719989999999----7699--2999789998999848------931467999
Q gi|254780924|r 451 VILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELR----SLGI--DVIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~----~~g~--~~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|-|.+ .+|+.+++.|.++|.++++.|.+++..++.. +.+- ..+..|.+|++..++. ...+.|.+|
T Consensus 11 alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilV 90 (252)
T PRK07035 11 ALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAQIRERHGRLDILV 90 (252)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99958874999999999998799899997988999999999996499579998248999999999999999829977898
Q ss_pred E
Q ss_conf 9
Q gi|254780924|r 518 V 518 (609)
Q Consensus 518 ~ 518 (609)
.
T Consensus 91 n 91 (252)
T PRK07035 91 N 91 (252)
T ss_pred E
T ss_conf 7
No 243
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.17 E-value=0.033 Score=32.02 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=52.9
Q ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----CCCEEECCCCCHHHHHHCC------HHHCCEEE
Q ss_conf 179973-77489999999984799089971998999999976-----9929997899989998489------31467999
Q gi|254780924|r 450 HVILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----GIDVIYGNATITKILLMAN------IEKARSLV 517 (609)
Q Consensus 450 ~vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~~l~~~~------i~~a~~vi 517 (609)
.++|-| .+.+|+.+++.|.++|.+|++.+.|++..+++.+. ....+.+|.+|++..++.= ..+.|.++
T Consensus 7 ~~lVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD~lv 86 (238)
T PRK05786 7 NVLIVGVSPGLGYAVAYFALREGASVYAFARSEEKLKEIKKTLAKYGNVIYVVGDVSKLEGAREAAEKAAKVFGALHGLV 86 (238)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89992898789999999999879999999698899999999874359779997578999999999999999839988799
Q ss_pred EECC
Q ss_conf 9359
Q gi|254780924|r 518 VSIS 521 (609)
Q Consensus 518 ~~~~ 521 (609)
...+
T Consensus 87 ~naG 90 (238)
T PRK05786 87 VTAG 90 (238)
T ss_pred EECC
T ss_conf 8057
No 244
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.17 E-value=0.084 Score=29.23 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74110024666664222027614-56899999766899999999886531147988620256777765554221223211
Q gi|254780924|r 252 KLFGVSLSLGAFFAGMILAESEL-SQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIVIIGKALIAFI 330 (609)
Q Consensus 252 ~~~g~s~~lgaf~aG~~l~~~~~-~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~~~~k~~~~~~ 330 (609)
+..+++...-|.+.|+.+++... +++...-++--+..+..+==+..|++++++.+.+.....+...+..+..-+...+.
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~ 112 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYF 112 (334)
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 52585178999999999850023403525620013887999999998360139999872711799999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHC
Q ss_conf 00025587999999864321
Q gi|254780924|r 331 VVIAFGRSVATALTIAASLS 350 (609)
Q Consensus 331 ~~~~~~~~~~~~~~~g~~l~ 350 (609)
..+..|.+++.++++|.+-+
T Consensus 113 lg~~lgld~~~a~Lia~Gss 132 (334)
T COG2855 113 LGKLLGLDKKLALLIAAGSS 132 (334)
T ss_pred HHHHHCCCHHHHHHHHHCCH
T ss_conf 99995998878999980211
No 245
>PRK07680 late competence protein ComER; Validated
Probab=96.17 E-value=0.085 Score=29.22 Aligned_cols=66 Identities=17% Similarity=0.393 Sum_probs=46.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCC----CCEEEECCCHHHHHHHHHC--CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH
Q ss_conf 1799737748999999998479----9089971998999999976--992999789998999848931467999935996
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAG----IALLVIEDSEKKIEELRSL--GIDVIYGNATITKILLMANIEKARSLVVSISTA 523 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~----~~v~vid~~~~~~~~~~~~--g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~ 523 (609)
+|-++|+|.+|..+++-+.+.+ .++.+.|.++++...++++ +.++.. ++.+. ++++|.++.++--.
T Consensus 2 kI~fIG~GnMg~Aii~gl~~~~~~~~~~i~i~~r~~~~~~~l~~~~~~i~~~~---~~~~~-----~~~~dvIiLaVKPq 73 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESRAVKPSCLTITNRTPAKAYHIKEKYPSIHVAK---TIEEV-----IEQSELIFICVKPL 73 (273)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCEEEEC---CHHHH-----HHCCCEEEEECCHH
T ss_conf 89998769999999999997799894569998899899999998769908868---88999-----84099899964888
No 246
>PRK08013 hypothetical protein; Provisional
Probab=96.16 E-value=0.0035 Score=38.79 Aligned_cols=16 Identities=6% Similarity=0.198 Sum_probs=7.8
Q ss_pred EEECCCHHHHHHHHHH
Q ss_conf 9973774899999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQNL 467 (609)
Q Consensus 452 ii~G~g~~g~~~~~~L 467 (609)
+++|++-....+-+.+
T Consensus 159 lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 159 LVIGADGANSWLRNKA 174 (400)
T ss_pred EEEECCCCCCHHHHHC
T ss_conf 8999788761323313
No 247
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=96.16 E-value=0.017 Score=34.08 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=70.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEE-EECCCHHHHHHHHHCCCCE---------------------EECC----CCC
Q ss_conf 7817997377489999999984799089-9719989999999769929---------------------9978----999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALL-VIEDSEKKIEELRSLGIDV---------------------IYGN----ATI 501 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~-vid~~~~~~~~~~~~g~~~---------------------~~gd----~~~ 501 (609)
+..|-|||.|-.|+++|=.|.+.|+..+ +||.|.--...++++.|.+ +.-. --+
T Consensus 21 ~a~VAicGlGGLGS~~AinLAR~GigkLiLvDfDvvepsNLnRQqY~~s~~G~~KteAlke~i~einPy~~ie~~d~ki~ 100 (200)
T TIGR02354 21 KASVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKVSDVGKKKTEALKENISEINPYVEIEIIDEKID 100 (200)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 58278970161168999999873022025664043236656132578762486217999987865088421231102127
Q ss_pred HHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 899984893146799993599689999999999958988089994
Q gi|254780924|r 502 TKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 502 ~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~ 546 (609)
++-+++ =..++|.|+=+.||.++-.+++.++.+.+|+.++|+-.
T Consensus 101 E~N~~~-~fkdaDiv~EAFDna~aKam~~n~vl~~ykdk~li~AS 144 (200)
T TIGR02354 101 EENLDK-LFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKKLIAAS 144 (200)
T ss_pred HHHHHH-HHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 667987-84067478871699889999999999767864587602
No 248
>PRK06500 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.035 Score=31.88 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=52.8
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC---CCCEEECCCCCHHHHHHC------CHHHCCEEEEEC
Q ss_conf 7997-377489999999984799089971998999999976---992999789998999848------931467999935
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL---GIDVIYGNATITKILLMA------NIEKARSLVVSI 520 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~---g~~~~~gd~~~~~~l~~~------~i~~a~~vi~~~ 520 (609)
++|. |.+-+|+.+++.|.++|.+|++.|.|++.+++..++ ....+.+|.+|++-.++. ...+.|.+|..-
T Consensus 9 ~lITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDiLvnnA 88 (249)
T PRK06500 9 ALITGGTSGIGLETARQFAAEGARVAITGRDAATLEAARAELGEDALVIRNDAGSVAAQRALAQALAEAGGRLDAVFINA 88 (249)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99937687899999999998799999996998999999998589759999517999999999999999769998999899
No 249
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.038 Score=31.63 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=51.4
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHH------CCHHHCCEEE
Q ss_conf 7997377-48999999998479908997199899999997----699--299978999899984------8931467999
Q gi|254780924|r 451 VILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLM------ANIEKARSLV 517 (609)
Q Consensus 451 vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~------~~i~~a~~vi 517 (609)
++|-|.+ .+|+.+|+.|.++|.+|++.|.|++..++..+ .|. ..+.+|.+|++..++ ....+.|.+|
T Consensus 10 alVTGgs~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDiLV 89 (250)
T PRK12939 10 ALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLDGLV 89 (250)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99958366899999999998799999996988999999999995599099999248999999999999999749997999
Q ss_pred EEC
Q ss_conf 935
Q gi|254780924|r 518 VSI 520 (609)
Q Consensus 518 ~~~ 520 (609)
-.-
T Consensus 90 NNA 92 (250)
T PRK12939 90 NNA 92 (250)
T ss_pred ECC
T ss_conf 887
No 250
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.14 E-value=0.066 Score=29.96 Aligned_cols=104 Identities=19% Similarity=0.164 Sum_probs=64.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEE-EECC----------CHHHHHHHHHCCCCE--E-ECC-CCCHHHHHHCCHHH
Q ss_conf 7817997377489999999984799089-9719----------989999999769929--9-978-99989998489314
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALL-VIED----------SEKKIEELRSLGIDV--I-YGN-ATITKILLMANIEK 512 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~-vid~----------~~~~~~~~~~~g~~~--~-~gd-~~~~~~l~~~~i~~ 512 (609)
..+++|-|+|.+|+.+++.|.+.|.+++ +-|. |.+.+.+.+++.-.+ + .++ .++.+.|+ .+
T Consensus 31 g~~v~IqG~GnVG~~~a~~L~~~Gakvv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 106 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE----LD 106 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHC----CC
T ss_conf 99999989889999999999987995999984787388888899999999999659802678875389623104----78
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHHHHHCCC
Q ss_conf 6799993599689999999999958988089994----69899999997699
Q gi|254780924|r 513 ARSLVVSISTAFEAAYITQEARNSNPSILIIALA----DSDSEVEHLTRYGA 560 (609)
Q Consensus 513 a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~----~~~~~~~~l~~~Ga 560 (609)
+|.++-|--..+.|... +++. +.++|+-. .+++..+.|++.|+
T Consensus 107 ~DI~iP~A~~~~I~~~~---a~~l--~ak~I~EgAN~p~t~~A~~~L~~rgI 153 (227)
T cd01076 107 CDILIPAALENQITADN---ADRI--KAKIIVEAANGPTTPEADEILHERGV 153 (227)
T ss_pred CCEEEECCCCCCCCHHH---HHHC--CCEEEEECCCCCCCHHHHHHHHHCCC
T ss_conf 87898777669779999---8544--76199845789989889999998869
No 251
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.14 E-value=0.087 Score=29.13 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=51.9
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH----HCCCC--EEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 79973-774899999999847990899719989999999----76992--999789998999848------931467999
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELR----SLGID--VIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~----~~g~~--~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|-| .+.+|+.+++.|.++|.+|++.|.++++.++.. +.|.+ .+..|.+|++..+++ ...+.|.+|
T Consensus 12 alVTG~~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDilV 91 (254)
T PRK08085 12 ILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEKAVAKLRQEGIKAHAAAFNVTHKQEIEAAIEHIEKDIGPIDVLI 91 (254)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99968567899999999998699999996988999999999984498189998268999999999999999839986999
Q ss_pred EEC
Q ss_conf 935
Q gi|254780924|r 518 VSI 520 (609)
Q Consensus 518 ~~~ 520 (609)
-.-
T Consensus 92 nNA 94 (254)
T PRK08085 92 NNA 94 (254)
T ss_pred ECC
T ss_conf 898
No 252
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.13 E-value=0.041 Score=31.36 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=52.4
Q ss_pred CCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCCEEECCCCCHHHHHHC------CHHHCCE
Q ss_conf 7817997--37748999999998479908997199899999997----6992999789998999848------9314679
Q gi|254780924|r 448 CDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGIDVIYGNATITKILLMA------NIEKARS 515 (609)
Q Consensus 448 ~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~~~~gd~~~~~~l~~~------~i~~a~~ 515 (609)
+++++++ |.+.+|+.+++.|.++|.+|++.|.|.+..++..+ .+.+++..|.+|++..++. ...+.|.
T Consensus 6 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~~~~~v~~~~~~~G~iDi 85 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDA 85 (239)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 98989994725489999999999879989999798778999998751788569996079999999999999998399979
Q ss_pred EEEEC
Q ss_conf 99935
Q gi|254780924|r 516 LVVSI 520 (609)
Q Consensus 516 vi~~~ 520 (609)
+|-.-
T Consensus 86 lVnNA 90 (239)
T PRK12828 86 LVNIA 90 (239)
T ss_pred EEECC
T ss_conf 99897
No 253
>PRK06720 hypothetical protein; Provisional
Probab=96.13 E-value=0.088 Score=29.10 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=41.2
Q ss_pred CCCCEE-EE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHH
Q ss_conf 478179-97-37748999999998479908997199899999997----6992--99978999899984
Q gi|254780924|r 447 LCDHVI-LV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLM 507 (609)
Q Consensus 447 ~~~~vi-i~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~ 507 (609)
+++.++ |- |.+-+|+.+|+.|.++|.+|++.|.|++..++..+ .|.+ .+..|.+|++-.++
T Consensus 14 L~gKvalITGa~~GIG~a~A~~la~~Ga~Vvi~d~~~~~~~~~~~~i~~~g~~a~~~~~Dvs~~~~v~~ 82 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQR 82 (169)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 299999998975489999999999869989995276365999999999749953789758899999999
No 254
>PRK06227 consensus
Probab=96.13 E-value=0.051 Score=30.72 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=49.2
Q ss_pred CCCEE-EE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHH----HHHHHCCCC--EEECCCCCHHHHHHC------CHHHC
Q ss_conf 78179-97-377489999999984799089971998999----999976992--999789998999848------93146
Q gi|254780924|r 448 CDHVI-LV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKI----EELRSLGID--VIYGNATITKILLMA------NIEKA 513 (609)
Q Consensus 448 ~~~vi-i~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~----~~~~~~g~~--~~~gd~~~~~~l~~~------~i~~a 513 (609)
+++++ |- |.+.+|+.+++.|.++|.+|++.|.|++.. +.+++.|.+ .+.+|.+|++-.+++ ...+.
T Consensus 4 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i 83 (256)
T PRK06227 4 SGKVAIVTGGGQGIGAAIAQTFAENGAKVVIADIDEEAGLEREEMLRSNGLDALFVKTDVSDEEDVKNMVRKTVERYGGI 83 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99889995866889999999999879999999698889999999999559918999816899999999999999982999
Q ss_pred CEEEEE
Q ss_conf 799993
Q gi|254780924|r 514 RSLVVS 519 (609)
Q Consensus 514 ~~vi~~ 519 (609)
|.+|-.
T Consensus 84 DiLVNN 89 (256)
T PRK06227 84 DILINN 89 (256)
T ss_pred CEEEEC
T ss_conf 799989
No 255
>PRK06138 short chain dehydrogenase; Provisional
Probab=96.11 E-value=0.035 Score=31.91 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=50.4
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC---CC--CEEECCCCCHHHHHHC------CHHHCCEEEE
Q ss_conf 79973-77489999999984799089971998999999976---99--2999789998999848------9314679999
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL---GI--DVIYGNATITKILLMA------NIEKARSLVV 518 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~---g~--~~~~gd~~~~~~l~~~------~i~~a~~vi~ 518 (609)
++|-| .+-+|+.+++.|.++|.+|++.|.|++..++..++ +- ..+.+|.+|++-.+++ ...+.|.+|-
T Consensus 8 alVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVN 87 (252)
T PRK06138 8 AIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLDVLVN 87 (252)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99947467999999999998799899996887899999999837991999994289999999999999998299989998
Q ss_pred E
Q ss_conf 3
Q gi|254780924|r 519 S 519 (609)
Q Consensus 519 ~ 519 (609)
.
T Consensus 88 N 88 (252)
T PRK06138 88 N 88 (252)
T ss_pred C
T ss_conf 9
No 256
>PRK06194 hypothetical protein; Provisional
Probab=96.10 E-value=0.037 Score=31.69 Aligned_cols=57 Identities=11% Similarity=0.233 Sum_probs=45.0
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH----HCCCCE--EECCCCCHHHHHH
Q ss_conf 79973-774899999999847990899719989999999----769929--9978999899984
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELR----SLGIDV--IYGNATITKILLM 507 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~----~~g~~~--~~gd~~~~~~l~~ 507 (609)
++|-| .+-+|+.+++.|.++|.++++.|.|++..++.. +.|.++ +..|.+|++-.++
T Consensus 9 avITGassGIG~a~A~~la~~Ga~Vvl~d~~~~~l~~~~~~l~~~g~~v~~~~~DVsd~~~v~~ 72 (301)
T PRK06194 9 AVITGAASGFGREFARIGARLGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEA 72 (301)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf 9992737799999999999879989999798899999999998459849999656899999999
No 257
>PRK08177 short chain dehydrogenase; Provisional
Probab=96.09 E-value=0.034 Score=31.92 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=53.4
Q ss_pred CCEEEECCCH-HHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHC----CHHHCCEEEEE
Q ss_conf 8179973774-89999999984799089971998999999976-992999789998999848----93146799993
Q gi|254780924|r 449 DHVILVGYGR-IGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMA----NIEKARSLVVS 519 (609)
Q Consensus 449 ~~vii~G~g~-~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~----~i~~a~~vi~~ 519 (609)
..++|-|.++ +|+.+++.|.++|++|++.+.|++..+.+++. +.+....|.+|++..++. .-++.|.++..
T Consensus 2 K~~lITGas~GIG~aia~~l~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~iDvlinN 78 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIERLDMNDPASLDQLLQRLQGQRFDLLFVN 78 (225)
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 98999273429999999999988699999979887789987254872899845888999999999606778889987
No 258
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.09 E-value=0.046 Score=31.03 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=55.4
Q ss_pred CCCCCE-EEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHC--CHHHCCEEEEE
Q ss_conf 347817-997-377489999999984799089971998999999976-992999789998999848--93146799993
Q gi|254780924|r 446 DLCDHV-ILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMA--NIEKARSLVVS 519 (609)
Q Consensus 446 ~~~~~v-ii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~--~i~~a~~vi~~ 519 (609)
++++.+ +|- |.+-+|+.+++.|.++|.+|++.|.|++..++..++ +.+.+..|.+|++..+++ ...+.|.+|-+
T Consensus 6 ~l~gK~~lVTG~~~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnn 84 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAARGARVVAAARNQADLDRLAGETGCEPLRLDVGDDAAIRAALAGAGAFDGLVNC 84 (245)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEEEC
T ss_conf 7999989994777689999999999879999999799899999998639879998079999999999965999899989
No 259
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.08 E-value=0.041 Score=31.37 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=49.7
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 799737-748999999998479908997199899999997----6992--999789998999848------931467999
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|-|. +-+|+.+++.|.++|.+|++.|.|++..++..+ .|-+ .+.+|.+|++..+++ ...+.|.+|
T Consensus 9 alVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~l~~~~~ei~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLV 88 (254)
T PRK07478 9 AIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGLDIAF 88 (254)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99958876899999999998799999997988999999999996499089997689999999999999999849998999
Q ss_pred E
Q ss_conf 9
Q gi|254780924|r 518 V 518 (609)
Q Consensus 518 ~ 518 (609)
-
T Consensus 89 N 89 (254)
T PRK07478 89 N 89 (254)
T ss_pred E
T ss_conf 8
No 260
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.08 E-value=0.084 Score=29.23 Aligned_cols=125 Identities=14% Similarity=0.199 Sum_probs=72.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 7817997377489999999984799-089971998999999976-99299978999899984893146799993599689
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
..+++|+|.|-.++.++-.|.+.|. ++.+++.|+++.+.+.++ +..+-. .+.+-+ ....+++|.+|-+|+-...
T Consensus 122 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~a~~l~~~~~~~~~~---~~~~~~-~~~~~~~diiInaTp~Gm~ 197 (275)
T PRK00258 122 GKRILLLGAGGAARAVILPLLELGVAEITIVNRTVERAEELAELFGEGVQA---LGLDEL-AGELADFDLIINTTSAGMS 197 (275)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCE---EEHHHH-HHCCCCCCEEEECCCCCCC
T ss_conf 875999888710799999999769998999958999999999983567627---537875-4304457779965777777
Q ss_pred HHHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHCCCCEEECHHHHHHHHHHHH
Q ss_conf 99999999995898808999469---89999999769987876589999999999
Q gi|254780924|r 526 AAYITQEARNSNPSILIIALADS---DSEVEHLTRYGADTVVMSAREIALGMLDR 577 (609)
Q Consensus 526 n~~~~~~~~~~~~~~~iia~~~~---~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~ 577 (609)
+...-.......++..++=.+-+ ....+.-++.|+. +++=.+..-.|-.+.
T Consensus 198 ~~~~~~~~~~~~~~~~v~D~~Y~P~~T~ll~~a~~~G~~-~i~Gl~Mli~Qa~~q 251 (275)
T PRK00258 198 GELPPLPASLLRPGTVVYDMIYGPLPTPFLAWAKAQGAR-TVDGLGMLVHQAAEA 251 (275)
T ss_pred CCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCE-EECCHHHHHHHHHHH
T ss_conf 886511387648886699866579999999999988294-857799999999999
No 261
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.07 E-value=0.017 Score=33.96 Aligned_cols=95 Identities=16% Similarity=0.287 Sum_probs=59.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHC--------CCCEEECCCCCHHHHHHCCHHHCCEEEEEC
Q ss_conf 7997377489999999984799--089971998999999976--------992999789998999848931467999935
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSL--------GIDVIYGNATITKILLMANIEKARSLVVSI 520 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~--------g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~ 520 (609)
|.|+|.|.+|..+|-.|..++. +++++|.|+++.+-...+ ....+.+..+ ++. +.++|.++.+-
T Consensus 1 V~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~~~~~~----~~~--~~daDvvVita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD----YAD--AADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCC----HHH--HCCCCEEEECC
T ss_conf 989896889999999998679988799981899811568888772563468853982798----899--67999999878
Q ss_pred CC---------H--HHHH----HHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 99---------6--8999----9999999958988089994698999
Q gi|254780924|r 521 ST---------A--FEAA----YITQEARNSNPSILIIALADSDSEV 552 (609)
Q Consensus 521 ~~---------~--~~n~----~~~~~~~~~~~~~~iia~~~~~~~~ 552 (609)
+. | +.|. .++...++.+|+..+ ..+.||-+.
T Consensus 75 G~~rkpg~tR~dll~~Na~I~k~i~~~i~~~~p~~iv-ivvtNPvDv 120 (300)
T cd00300 75 GAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAII-LVVSNPVDI 120 (300)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EECCCCHHH
T ss_conf 9899979988999998889999999999841997189-985796699
No 262
>pfam03616 Glt_symporter Sodium/glutamate symporter.
Probab=96.06 E-value=0.095 Score=28.89 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHCC--CHHHHHHHC
Q ss_conf 99999999999998825416--889998415
Q gi|254780924|r 50 VPALAEIGIILLMFGVGLHF--SVKDLISVR 78 (609)
Q Consensus 50 l~~l~~lgl~~llF~~Glel--d~~~l~~~~ 78 (609)
++.+..++++.++...|--+ +.+-+++..
T Consensus 3 ~d~~~tl~lA~llL~lG~~l~~kv~~L~~~~ 33 (368)
T pfam03616 3 LDALETLALAILVLLLGRFLVKKVKFLKKFN 33 (368)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 2289999999999999999999779998708
No 263
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.06 E-value=0.095 Score=28.88 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=71.2
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHCC--CCE---EECCCCCHHHHHHCCHHHCCEEEEECC
Q ss_conf 1799737-7489999999984799--0899719989999999769--929---997899989998489314679999359
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSLG--IDV---IYGNATITKILLMANIEKARSLVVSIS 521 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~g--~~~---~~gd~~~~~~l~~~~i~~a~~vi~~~~ 521 (609)
.|-|+|. |++|..+|-.|..++. +++++|.|+..-+.+.-.. ... .+....+.+ ..+.+|.++.+-+
T Consensus 3 KV~IIGA~G~VG~s~A~~l~~~~~~~elvL~Di~~a~g~a~Dl~~~~~~~~~~~~~~~~~~e-----~~~~aDIVVitaG 77 (313)
T PTZ00325 3 KVAVLGAAGGIGQPLSLLLKRNPYVSTLSLYDIVGAPGVAADLSHIPSPAKVTGYAKGELHK-----AVDGADVVLIVAG 77 (313)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEECCCCHHH-----HHCCCCEEEECCC
T ss_conf 89998999869999999998389977799980897266898886755535665452798889-----8489989998889
Q ss_pred C-----------HHHHHHH----HHHHHHHCCCCEEEEEECCHHH------HHHHHHCC---CCEEECHHHHHHHHHHHH
Q ss_conf 9-----------6899999----9999995898808999469899------99999769---987876589999999999
Q gi|254780924|r 522 T-----------AFEAAYI----TQEARNSNPSILIIALADSDSE------VEHLTRYG---ADTVVMSAREIALGMLDR 577 (609)
Q Consensus 522 ~-----------~~~n~~~----~~~~~~~~~~~~iia~~~~~~~------~~~l~~~G---a~~vi~p~~~~a~~~~~~ 577 (609)
. -+.|..+ +...++.+|+. ++..+.||-+ .+.+++.| -++|+-....-..|+-..
T Consensus 78 ~~rkpg~tR~dLl~~N~~I~~~i~~~i~~~~~~a-iiivvtNPvD~mt~i~~~~~~~~~~~~~~rViG~t~LDsaR~r~~ 156 (313)
T PTZ00325 78 VPRKPGMTRDDLFNTNAGIVRDLVLACASSAPKA-IFGIITNPVNSTVPIAAETLKKAGVYDPARLFGVTTLDVVRARTF 156 (313)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHH
T ss_conf 8899789689999970699999999999769980-999736824799999999999747998010776422888999999
Q ss_pred H
Q ss_conf 8
Q gi|254780924|r 578 L 578 (609)
Q Consensus 578 l 578 (609)
+
T Consensus 157 l 157 (313)
T PTZ00325 157 V 157 (313)
T ss_pred H
T ss_conf 9
No 264
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PMID:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PMID 8002588), although we did not manage to trace t
Probab=96.06 E-value=0.095 Score=28.87 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC---H
Q ss_conf 99999999999998708886--799999999627410385584789999999999999988254168899984151---5
Q gi|254780924|r 6 WGFVLAFIFGAIANRCRLPT--LIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLISVRG---I 80 (609)
Q Consensus 6 ~~l~~a~i~g~la~rl~lP~--i~~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~~~---~ 80 (609)
+.+.++.+.+.+++++|+|. .+|=++.+.++.-.+..-.+.++. +...+..++--..|.+++.+.+++..+ .
T Consensus 2 i~~~i~~~gg~l~~~l~lP~~~llGpm~~~~~~~~~~~~~~~~P~~---~~~~~q~iiG~~iG~~f~~~~~~~~~~~~~~ 78 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPW---LLALAQVVIGILIGSRFTREVLAELKRLWPA 78 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999999998867799999999999999806765789999---9999999999999826489999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 889989999999999999999967886899999
Q gi|254780924|r 81 ALPGALIQIILGTALGALMGMVMGWSLGGSVVF 113 (609)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~all~ 113 (609)
.+.........++..++...++.++|+.++++-
T Consensus 79 ~l~~~~~~i~~~~~~~~~l~~~~~~~~~ta~la 111 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPLTAFLA 111 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 999999999999999999999989999899999
No 265
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.05 E-value=0.05 Score=30.82 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=54.1
Q ss_pred CCCCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCCE--EECCCCCHHHHHHC------C
Q ss_conf 21347817997--37748999999998479908997199899999997----69929--99789998999848------9
Q gi|254780924|r 444 KTDLCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGIDV--IYGNATITKILLMA------N 509 (609)
Q Consensus 444 ~~~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~~--~~gd~~~~~~l~~~------~ 509 (609)
+.++++++.++ |.+.+|+.+++.|.++|.+|++.|.|++..++..+ .+-++ +.+|.+|++..+++ .
T Consensus 6 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~ 85 (255)
T PRK06113 6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAVSK 85 (255)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 76799998999588778999999999987999999969889999999999965990899983689999999999999998
Q ss_pred HHHCCEEEEEC
Q ss_conf 31467999935
Q gi|254780924|r 510 IEKARSLVVSI 520 (609)
Q Consensus 510 i~~a~~vi~~~ 520 (609)
..+.|.+|-..
T Consensus 86 ~G~iDilVnNA 96 (255)
T PRK06113 86 LGKVDILVNNA 96 (255)
T ss_pred HCCCCEEEECC
T ss_conf 19988999878
No 266
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.05 E-value=0.048 Score=30.92 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=50.8
Q ss_pred EEEECCC---HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC---CCCEEECCCCCHHHHHHC------CHHHCCEEEE
Q ss_conf 7997377---489999999984799089971998999999976---992999789998999848------9314679999
Q gi|254780924|r 451 VILVGYG---RIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL---GIDVIYGNATITKILLMA------NIEKARSLVV 518 (609)
Q Consensus 451 vii~G~g---~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~---g~~~~~gd~~~~~~l~~~------~i~~a~~vi~ 518 (609)
++|-|.. -+|+.+++.|.++|.+|++.+.|++..+.+.+. ....+.+|.+|++..+++ ...+.|.+|-
T Consensus 10 ~lVTGaag~~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD~lVn 89 (252)
T PRK06079 10 IVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFAQIKERFGKIDGIVH 89 (252)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99989999877999999999986999999848879999999850888659995189999999999999998688873443
No 267
>TIGR00946 2a69 Auxin Efflux Carrier; InterPro: IPR014024 This entry is mostly composed of known or predicted PIN proteins from plants, though some homologous prokaryotic proteins are also included. The PIN proteins are components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells , . Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments..
Probab=96.05 E-value=0.096 Score=28.84 Aligned_cols=125 Identities=14% Similarity=0.258 Sum_probs=78.6
Q ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHCCHHCCC---CCC--HHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHCCHHHH
Q ss_conf 9999999870-8886799999999627410385---584--78999999999999998825--41688999841515889
Q gi|254780924|r 12 FIFGAIANRC-RLPTLIGYLVAGILVGPRTPGF---VAS--QSLVPALAEIGIILLMFGVG--LHFSVKDLISVRGIALP 83 (609)
Q Consensus 12 ~i~g~la~rl-~lP~i~~~il~GillGp~~l~~---i~~--~~~l~~l~~lgl~~llF~~G--leld~~~l~~~~~~~~~ 83 (609)
.+++...||+ +-|...+.|+ |+++-=.++.| ++. ...++.++.-++...||..| +.++++.+|...+....
T Consensus 448 ~~l~~~~k~~~~~P~~~~~Ll-s~il~lv~~~~n~~~P~~~~~s~~~Ls~a~~p~alfslGlfl~L~~~~~~~~~~~~~~ 526 (608)
T TIGR00946 448 LILIMVWKKLIRFPPLIASLL-SLILSLVGFKWNFTMPGLILKSISILSGAALPMALFSLGLFLALQPRKLKLGVADAIL 526 (608)
T ss_pred HHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999999732542689999-9999998611466047899999875327899999999999997535687624148999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 989999999999999999967--8868999999999742389999876565541144
Q gi|254780924|r 84 GALIQIILGTALGALMGMVMG--WSLGGSVVFGLALSIASTVVLLKALQENRILETD 138 (609)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~lg--~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~ 138 (609)
..++-+++.=++.+.+.+++| ++-.. .-++.+.+.-..+++..++..+-..+.+
T Consensus 527 a~~~rf~~~Pa~~~~~~~~~GGsl~g~~-~~vai~~aA~P~~~v~~Vla~~y~~d~~ 582 (608)
T TIGR00946 527 ALIVRFLVGPAVMAVISKLIGGSLRGLE-LSVAIVQAALPQGIVAAVLAKEYEVDVE 582 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999999999999726544227-8999999983556889887654056788
No 268
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.04 E-value=0.071 Score=29.74 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=58.5
Q ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC------------------------CCCE-
Q ss_conf 22321347817997377489999999984799-089971998999999976------------------------9929-
Q gi|254780924|r 441 TIQKTDLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL------------------------GIDV- 494 (609)
Q Consensus 441 ~~~~~~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~------------------------g~~~- 494 (609)
+.+++=.+.||+|+|.|-.|..++..|...|. .+.++|.|.-....+.++ ..++
T Consensus 20 e~QekL~~s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~v~I~ 99 (209)
T PRK08644 20 GVLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMFKVEALKENLLRINPFVKIE 99 (209)
T ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 99999962968998887889999999999389818998899901541103756787759756999999987448982899
Q ss_pred EECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 9978999899984893146799993599689999999999958
Q gi|254780924|r 495 IYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSN 537 (609)
Q Consensus 495 ~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~ 537 (609)
.+-+..+++.+++. ++++|.++=++||.++-..+...+.+..
T Consensus 100 ~~~~~l~~~n~~~l-~~~~DiViDctDN~~tR~li~~~c~~~~ 141 (209)
T PRK08644 100 VHQVKIDEDNIEEL-FKDCDIVVEAFDNAETKAMLVETVLEKK 141 (209)
T ss_pred EEECCCCHHHHHHH-HHCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 97224898999999-8579999999999999999999999977
No 269
>KOG0024 consensus
Probab=96.04 E-value=0.096 Score=28.83 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=66.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHCCCCEEECCCCCH------HHHHHC-CHHHCCEEE
Q ss_conf 347817997377489999999984799-089971998999999976992999789998------999848-931467999
Q gi|254780924|r 446 DLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSLGIDVIYGNATIT------KILLMA-NIEKARSLV 517 (609)
Q Consensus 446 ~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~g~~~~~gd~~~~------~~l~~~-~i~~a~~vi 517 (609)
..-..++|+|.|++|-......+..|. +|+++|-+++|.+.+++.|.+++.-+.... +..+++ +-.+.|..+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 66886899767689999999998749872899606777999999829757730445565899999998641666798689
Q ss_pred EECCCHHHHHHHHHHHHHHC
Q ss_conf 93599689999999999958
Q gi|254780924|r 518 VSISTAFEAAYITQEARNSN 537 (609)
Q Consensus 518 ~~~~~~~~n~~~~~~~~~~~ 537 (609)
-|++-+..-..+....|..+
T Consensus 248 dCsG~~~~~~aai~a~r~gG 267 (354)
T KOG0024 248 DCSGAEVTIRAAIKATRSGG 267 (354)
T ss_pred ECCCCHHHHHHHHHHHCCCC
T ss_conf 86660466898998751287
No 270
>COG2431 Predicted membrane protein [Function unknown]
Probab=96.03 E-value=0.092 Score=28.97 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 422122321100025587999999864
Q gi|254780924|r 321 IIGKALIAFIVVIAFGRSVATALTIAA 347 (609)
Q Consensus 321 ~~~k~~~~~~~~~~~~~~~~~~~~~g~ 347 (609)
++.-.++....+...+.+..+++.++.
T Consensus 173 ilssliGG~iaa~~l~lpl~~~lAmas 199 (297)
T COG2431 173 LLSSLIGGLIAAFLLDLPLTTGLAMAS 199 (297)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999999999999998160888899995
No 271
>pfam06826 Asp-Al_Ex Predicted Permease Membrane Region. This family represents five transmembrane helices that are normally found flanking (five either side) a pair of pfam02080 domains. This suggests that the paired regions form a ten helical structure, probably forming the pore, whereas the pfam02080) binds a ligand for export or regulation of the pore. A member from Tetragenococcus halophilus is described as a aspartate-alanine antiporter. In conjunction with L-aspartate-beta-decarboxylase it forms a 'proton motive metabolic cycle catalysed by an aspartate-alanine exchange'. The general conservation of domain architecture in this family suggests that they are functional orthologues.
Probab=96.03 E-value=0.098 Score=28.79 Aligned_cols=120 Identities=23% Similarity=0.287 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHH
Q ss_conf 999999999999998--7088867999999996274103--855847899999999999999882541688999---841
Q gi|254780924|r 5 IWGFVLAFIFGAIAN--RCRLPTLIGYLVAGILVGPRTP--GFVASQSLVPALAEIGIILLMFGVGLHFSVKDL---ISV 77 (609)
Q Consensus 5 ~~~l~~a~i~g~la~--rl~lP~i~~~il~GillGp~~l--~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l---~~~ 77 (609)
.+.+.+++..|.+-- .+++-...+-+++|+++|..+- .+--+....+.+.++|+.+.++..|++--++-+ |+.
T Consensus 3 fl~ialG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~g~~~~~~~~~~~~~~l~~lGL~lFl~~vGl~aG~~f~~~l~~~ 82 (169)
T pfam06826 3 FLGIALGLLLGRIKIKGGFSLGVAGGVLIVGLLLGHLGSTGPTFMPFSALSFLRELGLALFLAAVGLSAGPGFFSSLKKD 82 (169)
T ss_pred EHHHHHHHHHCCEEECCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13998988672111304444461279999999999731336787891089999999999999999998899999999984
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 51588998999999999999999-99678868999999999-742389999
Q gi|254780924|r 78 RGIALPGALIQIILGTALGALMG-MVMGWSLGGSVVFGLAL-SIASTVVLL 126 (609)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~-~~lg~~~~~all~g~~l-~~ts~~vv~ 126 (609)
+.+....+..-.+.+..++...+ |.+++++.... |..- +.|||+..-
T Consensus 83 G~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~~~--G~~aGa~Tstp~L~ 131 (169)
T pfam06826 83 GLLLVGLALLITVVPLLIALVLGKYVFKIDPGLAA--GLLAGALTNTPALG 131 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHCCCCCHHHHH
T ss_conf 59999999999999999999999999399988999--99754041609999
No 272
>PRK06346 consensus
Probab=96.01 E-value=0.033 Score=32.04 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=51.0
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 7997-37748999999998479908997199899999997----699--2999789998999848------931467999
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|- |.+.+|+.+++.|.++|.+|++.|.|++..++..+ .+. ..+.+|.+|++..+++ ...+.|.+|
T Consensus 8 ~lITGgs~GIG~a~a~~la~~Ga~V~i~~r~~e~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~i~~~~~~fg~iDiLV 87 (251)
T PRK06346 8 AIVTGAASGMGKSIAELFAKEGAKVVVADLNLERAQKVVEEITSNGGTAIAVVANVTKQEDIENMVDTAVDTYGTLDILV 87 (251)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99947578899999999998799899997989999999999996399089997788989999999999999829997999
Q ss_pred EE
Q ss_conf 93
Q gi|254780924|r 518 VS 519 (609)
Q Consensus 518 ~~ 519 (609)
-.
T Consensus 88 nN 89 (251)
T PRK06346 88 NN 89 (251)
T ss_pred EC
T ss_conf 89
No 273
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=96.01 E-value=0.011 Score=35.27 Aligned_cols=127 Identities=12% Similarity=0.183 Sum_probs=86.2
Q ss_pred EECCCHHHHHHHHHHHHCCCCEEEECC----CHHHHHHHHH---CCCCEEECCCCCHHHHHHC-C----HHHCCEEEE--
Q ss_conf 973774899999999847990899719----9899999997---6992999789998999848-9----314679999--
Q gi|254780924|r 453 LVGYGRIGKVIVQNLKAAGIALLVIED----SEKKIEELRS---LGIDVIYGNATITKILLMA-N----IEKARSLVV-- 518 (609)
Q Consensus 453 i~G~g~~g~~~~~~L~~~~~~v~vid~----~~~~~~~~~~---~g~~~~~gd~~~~~~l~~~-~----i~~a~~vi~-- 518 (609)
.=|.|=+|++++++|.++|++|++.|. +++.++..++ +....+.||-.|.+.|++. . -++.|+||=
T Consensus 5 TGGAGYIGSHt~~~Ll~~G~ev~vlDNLs~G~~~~l~~~~~~~G~~~~fv~gDL~D~~~l~~~f~kqql~~~idAViHFA 84 (341)
T TIGR01179 5 TGGAGYIGSHTVRQLLESGYEVVVLDNLSNGSAEALKRGEEITGKEVTFVEGDLRDRELLRRVFEKQQLEHKIDAVIHFA 84 (341)
T ss_pred EECCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 61466443588788763597289981578884887500234148532058717515799999987743116754675201
Q ss_pred EC---------------CCHHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHH
Q ss_conf 35---------------99689999999999958988089994----698999999976998787658999999999987
Q gi|254780924|r 519 SI---------------STAFEAAYITQEARNSNPSILIIALA----DSDSEVEHLTRYGADTVVMSAREIALGMLDRLN 579 (609)
Q Consensus 519 ~~---------------~~~~~n~~~~~~~~~~~~~~~iia~~----~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~ 579 (609)
.. +|-...+.+++..++.+-+.-|..-+ -+++....=++.-....++|+- ..+.|.|++.
T Consensus 85 g~~~VgESv~~Pl~YY~NNv~nTl~L~~~m~~~GV~~~iFSSsAaVYG~p~~~Pi~E~~pl~~PinPYG-~sKlM~E~iL 163 (341)
T TIGR01179 85 GLIAVGESVQKPLKYYRNNVVNTLNLLEAMQETGVKKFIFSSSAAVYGEPESIPISEDSPLGDPINPYG-RSKLMVERIL 163 (341)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHH
T ss_conf 121252557524544000468999999999981897415304214507788555022256778748665-5668899999
Q ss_pred H
Q ss_conf 4
Q gi|254780924|r 580 Q 580 (609)
Q Consensus 580 ~ 580 (609)
+
T Consensus 164 ~ 164 (341)
T TIGR01179 164 R 164 (341)
T ss_pred H
T ss_conf 9
No 274
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.01 E-value=0.1 Score=28.73 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=67.6
Q ss_pred CEEEECC--CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CC----CCEEECCCCCHHHHHHCCHHHCCEEEEE
Q ss_conf 1799737--748999999998479908997199899999997----69----9299978999899984893146799993
Q gi|254780924|r 450 HVILVGY--GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LG----IDVIYGNATITKILLMANIEKARSLVVS 519 (609)
Q Consensus 450 ~vii~G~--g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~i~~a~~vi~~ 519 (609)
++.=+|. |-++-+.++.. ..+-+|..||.|+++++.+++ .| ++++.||+ ++.+.+.. .+.|.+.+-
T Consensus 43 ~vwDIGaGsGsvsiEaa~~~-~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~a--p~~l~~l~-p~pD~vFIG 118 (198)
T PRK00377 43 KLVDVGCGTGSVSVEAALIV-GEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEA--PEVLPKLN-PKSDRYFIG 118 (198)
T ss_pred EEEEECCCEEHHHHHHHHHC-CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCH--HHHHHCCC-CCCCEEEEE
T ss_conf 99991770329999999966-978759999678889999999999809998859995254--88772089-988989997
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH----HHHHHCCCC
Q ss_conf 599689999999999958988089994698999----999976998
Q gi|254780924|r 520 ISTAFEAAYITQEARNSNPSILIIALADSDSEV----EHLTRYGAD 561 (609)
Q Consensus 520 ~~~~~~n~~~~~~~~~~~~~~~iia~~~~~~~~----~~l~~~Ga~ 561 (609)
=+..+..-.+-...+.+.|..++++-+-+-+.. +.+++.|.+
T Consensus 119 G~~g~l~~il~~~~~~L~~gGriVinaVtlet~~~~~~~l~~~~~~ 164 (198)
T PRK00377 119 GGGEELPEIIQAALEKIGKGGRIVADAILLESLNKALSALEELGYK 164 (198)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCC
T ss_conf 8877789999999985799989999836298899999999976998
No 275
>PRK06172 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.049 Score=30.88 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=49.5
Q ss_pred CCCE-EEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH----HCCCC--EEECCCCCHHHHHHC------CHHHC
Q ss_conf 7817-9973-774899999999847990899719989999999----76992--999789998999848------93146
Q gi|254780924|r 448 CDHV-ILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELR----SLGID--VIYGNATITKILLMA------NIEKA 513 (609)
Q Consensus 448 ~~~v-ii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~----~~g~~--~~~gd~~~~~~l~~~------~i~~a 513 (609)
++++ +|-| .+.+|+.+++.|.++|.+|++.|.|++..++.. +.|.+ .+..|.+|++-.+++ ...+.
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i 85 (253)
T PRK06172 6 SGQVALVTGGAAGIGRATAIAFAREGAKVVVADRDAAGGEETVALIREAGGEALFIACDVTRDAEVKALVEKTIAAYGRL 85 (253)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99989993757689999999999879989999798899999999999649937999818999999999999999982999
Q ss_pred CEEEE
Q ss_conf 79999
Q gi|254780924|r 514 RSLVV 518 (609)
Q Consensus 514 ~~vi~ 518 (609)
|.+|-
T Consensus 86 DiLVN 90 (253)
T PRK06172 86 DYAFN 90 (253)
T ss_pred CEEEE
T ss_conf 99998
No 276
>PRK06101 short chain dehydrogenase; Provisional
Probab=95.99 E-value=0.034 Score=31.92 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=47.1
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCC--CEEECCCCCHHHHHHC
Q ss_conf 799737-748999999998479908997199899999997699--2999789998999848
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGI--DVIYGNATITKILLMA 508 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~--~~~~gd~~~~~~l~~~ 508 (609)
|+|-|. +.+|+.++++|.++|.+|++.+.|++.++++.+++- ..+..|.+|.+-.+++
T Consensus 4 vlITGassGIG~a~A~~la~~G~~Vi~~~R~~~~l~~~~~~~~~~~~~~~Dvtd~~~~~~~ 64 (241)
T PRK06101 4 VLITGATSGIGKQLALDYAKAGWKVIACGRNEAVLDELHDQSSNIFTLAFDVTDYEETKAA 64 (241)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEEECCCHHHHHHH
T ss_conf 9992240499999999999879989999899999999997328804898522679999999
No 277
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=95.96 E-value=0.1 Score=28.59 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=51.5
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----C---CCEEECCCCCHHHHHHC------CHHHCC
Q ss_conf 1799737-7489999999984799089971998999999976-----9---92999789998999848------931467
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----G---IDVIYGNATITKILLMA------NIEKAR 514 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g---~~~~~gd~~~~~~l~~~------~i~~a~ 514 (609)
-++|-|. +.+|+.+|+.|.++|.+|++.|.|++..++..++ + ...+.+|.+|++-.+++ ...+.|
T Consensus 4 valITG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 83 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRVD 83 (259)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 89994688689999999999879999999798899999999998624886089998327999999999999999829971
Q ss_pred EEEEEC
Q ss_conf 999935
Q gi|254780924|r 515 SLVVSI 520 (609)
Q Consensus 515 ~vi~~~ 520 (609)
.+|.+-
T Consensus 84 ilVnnA 89 (259)
T PRK12384 84 LLVYSA 89 (259)
T ss_pred EEEECC
T ss_conf 999899
No 278
>PRK05868 hypothetical protein; Validated
Probab=95.96 E-value=0.012 Score=35.11 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=4.1
Q ss_pred EECCCHHHHHHH
Q ss_conf 973774899999
Q gi|254780924|r 453 LVGYGRIGKVIV 464 (609)
Q Consensus 453 i~G~g~~g~~~~ 464 (609)
++|+.-+-+.+=
T Consensus 152 VIGADGi~S~VR 163 (372)
T PRK05868 152 VIGADGLHSNVR 163 (372)
T ss_pred EEECCCCCHHHH
T ss_conf 997478741778
No 279
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=95.95 E-value=0.1 Score=28.66 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=65.2
Q ss_pred CEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0899719989999999----7699299978999899984893146799993599-6899999999999589880899946
Q gi|254780924|r 473 ALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSNPSILIIALAD 547 (609)
Q Consensus 473 ~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~~~~~iia~~~ 547 (609)
++.+||+|++..+.+. .+|+.+... .+-.+.++...-.+.|.++.-..= +......|...|+.+++.+||..+.
T Consensus 2 kILlVEDd~~~~~~l~~~L~~~g~~V~~a-~~~~ea~~~~~~~~~DlvilDi~lp~~~G~~l~~~ir~~~~~~pII~lt~ 80 (222)
T PRK10643 2 KILIVEDDTLLLQGLILAAQTEGYACDGV-STAREAEQSLESGHYSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTA 80 (222)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEC
T ss_conf 79999288999999999999789999998-99999999997489989999688899862268999983489988999821
Q ss_pred CH--HHHHHHHHCCCCEEECHHH
Q ss_conf 98--9999999769987876589
Q gi|254780924|r 548 SD--SEVEHLTRYGADTVVMSAR 568 (609)
Q Consensus 548 ~~--~~~~~l~~~Ga~~vi~p~~ 568 (609)
.. ++.-.-.++|||.-+....
T Consensus 81 ~~~~~~~~~~l~~GAddyi~KP~ 103 (222)
T PRK10643 81 RDTLEDRIAGLDVGADDYLVKPF 103 (222)
T ss_pred CCCHHHHHHHHHCCCCEEEECCC
T ss_conf 03678899999759977643887
No 280
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.95 E-value=0.027 Score=32.67 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=78.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHCCCCEE-ECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 781799737748999999998479-908997199899999997699299-978999899984893146799993599689
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAG-IALLVIEDSEKKIEELRSLGIDVI-YGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~-~~v~vid~~~~~~~~~~~~g~~~~-~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
..+++|+|.|-.++.++-.|.+.| .+++++..++++.+++.+.--+.. .....+.+-++... ++|.+|-+|+-...
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~--~~dliINaTp~Gm~ 203 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLE--EADLLINATPVGMA 203 (283)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCEEEECCCCCCC
T ss_conf 8889998976899999999998699879999588899999999864505631102455412355--45789978878777
Q ss_pred HH---HHHHHHHHHCCCCEEEEEE----CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHH
Q ss_conf 99---9999999958988089994----698999999976998787658999999999987
Q gi|254780924|r 526 AA---YITQEARNSNPSILIIALA----DSDSEVEHLTRYGADTVVMSAREIALGMLDRLN 579 (609)
Q Consensus 526 n~---~~~~~~~~~~~~~~iia~~----~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~ 579 (609)
.- .... .+..++..++.-. ......+.-++.|+. +++=-.....|-++...
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~-~idGl~Mlv~Qaa~aF~ 261 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNPLETPLLREARAQGAK-TIDGLGMLVHQAAEAFE 261 (283)
T ss_pred CCCCCCCCC--HHHCCCCCEEEEECCCCCCCHHHHHHHHCCCC-EECCHHHHHHHHHHHHH
T ss_conf 887888886--77668677899811188788899999985990-78739999999999999
No 281
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.95 E-value=0.051 Score=30.75 Aligned_cols=73 Identities=12% Similarity=0.173 Sum_probs=49.8
Q ss_pred CCCCEEE-EC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHC------CHHH
Q ss_conf 4781799-73-7748999999998479908997199899999997----699--2999789998999848------9314
Q gi|254780924|r 447 LCDHVIL-VG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMA------NIEK 512 (609)
Q Consensus 447 ~~~~vii-~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~------~i~~ 512 (609)
+++++++ -| .+.+|+.+++.+.++|.++++.|.|++.+++..+ .|- ..+..|.+|++-.++. ...+
T Consensus 3 lk~Kv~lITGas~GIG~aiA~~~A~~Ga~Vii~~r~~~~l~~~~~~i~~~g~~~~~~~~d~~~~~~v~~~~~~i~~~~g~ 82 (227)
T PRK08862 3 IKNSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALNDTYEQCSALTDNVYSYQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999798879999999999987999999969999999999999975897489995166199999999999999589
Q ss_pred -CCEEEEE
Q ss_conf -6799993
Q gi|254780924|r 513 -ARSLVVS 519 (609)
Q Consensus 513 -a~~vi~~ 519 (609)
.|.+|-+
T Consensus 83 ~iDvLVNN 90 (227)
T PRK08862 83 APDVLVNN 90 (227)
T ss_pred CCEEEEEC
T ss_conf 97499856
No 282
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=95.94 E-value=0.11 Score=28.52 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=52.1
Q ss_pred CCCCE-EEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH----HCCCC--EEECCCCCHHHHHHC------CHHH
Q ss_conf 47817-9973-774899999999847990899719989999999----76992--999789998999848------9314
Q gi|254780924|r 447 LCDHV-ILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELR----SLGID--VIYGNATITKILLMA------NIEK 512 (609)
Q Consensus 447 ~~~~v-ii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~----~~g~~--~~~gd~~~~~~l~~~------~i~~ 512 (609)
+++.+ +|-| .+-+|+.+|+.|.++|.+|++.|.|++..++.. +.+.+ .+.+|.+|++-.++. ...+
T Consensus 8 l~gK~alVTG~s~GIG~aiA~~la~~Ga~Vii~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAEAGATIVFNDIKQELVDKGLAAYRELGIEAHGYVCDVTDEDGIQAMVAQIEKEVGV 87 (265)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 89998999585768999999999986999999959989999999999954991799993289999999999999998299
Q ss_pred CCEEEEECC
Q ss_conf 679999359
Q gi|254780924|r 513 ARSLVVSIS 521 (609)
Q Consensus 513 a~~vi~~~~ 521 (609)
.|.+|..-+
T Consensus 88 iDiLVnNAG 96 (265)
T PRK07097 88 IDILVNNAG 96 (265)
T ss_pred CCEEEECCC
T ss_conf 989998998
No 283
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.11 Score=28.51 Aligned_cols=71 Identities=24% Similarity=0.320 Sum_probs=53.4
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC----CCCEEECCCCCHHHHHHCC-----HHHCCEEEEE
Q ss_conf 1799737-7489999999984799089971998999999976----9929997899989998489-----3146799993
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL----GIDVIYGNATITKILLMAN-----IEKARSLVVS 519 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~----g~~~~~gd~~~~~~l~~~~-----i~~a~~vi~~ 519 (609)
.++|-|. +.+|+.++++|.++|.++++++.|++..+++.++ +..++..|.+|++..++.. ..+.|.+|-.
T Consensus 7 ~vlITGassGIG~a~A~~la~~G~~vil~~R~~~~L~~~~~~l~~~~~~~~~~Dls~~~~~~~~~~~~~~~g~iDiLInN 86 (262)
T PRK09072 7 RVLLTGASGGIGEALAEALCAAGARLLLVGRNAEKLEALAARPYPGRVRWVVADLTSEAGREAVLARAREMGGINVLINN 86 (262)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 89994862399999999999879989999898999999999845897699997179999999999999984999899989
Q ss_pred C
Q ss_conf 5
Q gi|254780924|r 520 I 520 (609)
Q Consensus 520 ~ 520 (609)
-
T Consensus 87 A 87 (262)
T PRK09072 87 A 87 (262)
T ss_pred C
T ss_conf 9
No 284
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.93 E-value=0.026 Score=32.79 Aligned_cols=97 Identities=12% Similarity=0.256 Sum_probs=57.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC--------CCC-EEECCCCCHHHHHHCCHHHCCEEEE
Q ss_conf 817997377489999999984799-089971998999999976--------992-9997899989998489314679999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL--------GID-VIYGNATITKILLMANIEKARSLVV 518 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~--------g~~-~~~gd~~~~~~l~~~~i~~a~~vi~ 518 (609)
..|.|+|.|.+|..++..|..++. +++++|.|+++.+--..+ +.+ .++++.+ ++ .+.++|.+|.
T Consensus 2 ~KV~IIGaG~VG~~~A~~l~~~~~~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~i~~~~d----y~--~~~daDiVVi 75 (313)
T PTZ00117 2 KKISIIGSGQIGAIVGLLLLQENLGDVYLYDVIEGVPQGKALDLKHFSTIIGVNANILGTNN----YE--DIKDSDVIVI 75 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCC----HH--HHCCCCEEEE
T ss_conf 78999897989999999997089987999958898308899887724203689857983799----99--9689999998
Q ss_pred ECCCH-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 35996-----------8999----9999999958988089994698999
Q gi|254780924|r 519 SISTA-----------FEAA----YITQEARNSNPSILIIALADSDSEV 552 (609)
Q Consensus 519 ~~~~~-----------~~n~----~~~~~~~~~~~~~~iia~~~~~~~~ 552 (609)
+-+-. ..|. .++...++++|+. ++..+.||-+.
T Consensus 76 tAG~~rk~g~tR~dLl~~N~~I~~~i~~~i~~~~p~a-iiivvtNPvDi 123 (313)
T PTZ00117 76 TAGVQRKEGMTREDLIGVNGKIMKSVAESVKKHCPNA-FVICVSNPLDI 123 (313)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCHHH
T ss_conf 9899899799889999876777888887762358980-89978994899
No 285
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=95.93 E-value=0.11 Score=28.50 Aligned_cols=92 Identities=11% Similarity=0.332 Sum_probs=52.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC---CCCEE-EECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH
Q ss_conf 78179973774899999999847---99089-971998999999976992999789998999848931467999935996
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAA---GIALL-VIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA 523 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~---~~~v~-vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~ 523 (609)
..+++|+|.|+.++.++++++++ |++++ .+|++++.. -...+.++ .|+ ..+..+.+.-+++|.++++.+.+
T Consensus 125 ~rrvlIIG~g~~~~~l~~~l~~~~~~g~~vvG~~dd~~~~~--~~~~~~p~-lg~--~~~l~~~i~~~~ideViIa~p~~ 199 (445)
T TIGR03025 125 LRRVLIVGTGELAEELAAALSRNPDLGYRVVGFVDDRPEDR--VEVAGLPV-LGK--LDDLVELVRAHRVDEVIIALPLS 199 (445)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC--CCCCCCCC-CCC--HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 72399990848999999999828468848999977875444--55678860-188--99999999976998899965867
Q ss_pred --HHHHHHHHHHHHHCCCCEEEE
Q ss_conf --899999999999589880899
Q gi|254780924|r 524 --FEAAYITQEARNSNPSILIIA 544 (609)
Q Consensus 524 --~~n~~~~~~~~~~~~~~~iia 544 (609)
+....+...+++.+.+.+++.
T Consensus 200 ~~~~~~~~l~~~~~~~v~v~~ip 222 (445)
T TIGR03025 200 EEARILELLLQLSDLGVDVRLVP 222 (445)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 76899999999875597899958
No 286
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.92 E-value=0.038 Score=31.66 Aligned_cols=71 Identities=18% Similarity=0.365 Sum_probs=50.4
Q ss_pred CCCEEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHC-----CHHHCCE
Q ss_conf 7817997-37748999999998479908997199899999997----6992--999789998999848-----9314679
Q gi|254780924|r 448 CDHVILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMA-----NIEKARS 515 (609)
Q Consensus 448 ~~~vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~-----~i~~a~~ 515 (609)
+++|+|+ |.+-+|+.+++.|. +|.++++.|.|++..++..+ .|.+ .+..|.+|++..++. ...+.|.
T Consensus 4 ~~kV~v~tGa~GIG~aiA~~la-~Ga~vvi~~~~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~l~~~~~~~G~idi 82 (277)
T PRK06940 4 SKEVVVVIGAGGMGQAIARRVG-SGKTVLLADYNEENLQAVARTLREAGFDVITQQVDVSSRESVKALAQTAATLGAVTG 82 (277)
T ss_pred CCCEEEECCCCHHHHHHHHHHH-HCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 9929999781699999999998-199899998988999999999872288299998257998999999999998699879
Q ss_pred EEEE
Q ss_conf 9993
Q gi|254780924|r 516 LVVS 519 (609)
Q Consensus 516 vi~~ 519 (609)
+|-+
T Consensus 83 LVnn 86 (277)
T PRK06940 83 LVHT 86 (277)
T ss_pred EEEC
T ss_conf 9988
No 287
>PRK08339 short chain dehydrogenase; Provisional
Probab=95.92 E-value=0.054 Score=30.56 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=50.6
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH-----CC--CCEEECCCCCHHHHHHCC-----HHHCCEEE
Q ss_conf 79973-7748999999998479908997199899999997-----69--929997899989998489-----31467999
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS-----LG--IDVIYGNATITKILLMAN-----IEKARSLV 517 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~-----~g--~~~~~gd~~~~~~l~~~~-----i~~a~~vi 517 (609)
++|.| .+-+|+.+++.|.++|.+|++.|.|++..++..+ .+ ...+.+|.++++-.++.- ..+.|.++
T Consensus 11 alITG~s~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~~dilv 90 (263)
T PRK08339 11 AFTTASSKGIGFGVARVLARAGADVIILSRNEENLKRAKEKIKSESDVEVHYIVADLTKREDLERTVKELKNIGDPDIFF 90 (263)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99916260999999999998699999997988999999999985049857999848999999999999999569998999
Q ss_pred EEC
Q ss_conf 935
Q gi|254780924|r 518 VSI 520 (609)
Q Consensus 518 ~~~ 520 (609)
...
T Consensus 91 ~na 93 (263)
T PRK08339 91 FST 93 (263)
T ss_pred ECC
T ss_conf 899
No 288
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.92 E-value=0.11 Score=28.47 Aligned_cols=119 Identities=15% Similarity=0.190 Sum_probs=68.1
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCC--CEEEECCCHHHHHHH--HHCC----CCEEECCCCCHHHHHHCCHHHCCEEEEEC
Q ss_conf 1799737-7489999999984799--089971998999999--9769----92999789998999848931467999935
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAAGI--ALLVIEDSEKKIEEL--RSLG----IDVIYGNATITKILLMANIEKARSLVVSI 520 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~--~~~g----~~~~~gd~~~~~~l~~~~i~~a~~vi~~~ 520 (609)
.|.|+|. |++|..+|-.|..++. +++++|.|+..-+.+ ...+ ...+.++....+. +.++|.+|++-
T Consensus 2 KV~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~g~a~DL~h~~~~~~v~~~~~~~~~~~~-----l~daDiVVitA 76 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKA-----LKGADVVVIPA 76 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCHHHH-----HCCCCEEEECC
T ss_conf 8999999981899999999729997769998277426675532165656851257088746677-----47999999878
Q ss_pred CC---------H--HHHH----HHHHHHHHHCCCCEEEEEECCHHH------HHHHHHCC---CCEEECHHHHHHHHH
Q ss_conf 99---------6--8999----999999995898808999469899------99999769---987876589999999
Q gi|254780924|r 521 ST---------A--FEAA----YITQEARNSNPSILIIALADSDSE------VEHLTRYG---ADTVVMSAREIALGM 574 (609)
Q Consensus 521 ~~---------~--~~n~----~~~~~~~~~~~~~~iia~~~~~~~------~~~l~~~G---a~~vi~p~~~~a~~~ 574 (609)
+. | +.|. .++...++.+|+. ++..+.||-+ .+.+++.| -++|+-...+-..|+
T Consensus 77 G~~rkpG~tR~dLl~~N~~I~k~i~~~i~~~~p~a-iiivvtNPvD~lt~i~~~~~k~~~~~p~~rViG~T~LDsaR~ 153 (310)
T cd01337 77 GVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKA-LILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRA 153 (310)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHH
T ss_conf 98899798989998740788999999998209984-999970834779999999999817998120787650888999
No 289
>PRK06198 short chain dehydrogenase; Provisional
Probab=95.91 E-value=0.11 Score=28.45 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=50.7
Q ss_pred CEEEECCCH-HHHHHHHHHHHCCCC-EEEECCCHHHHHHHH----HCCCC--EEECCCCCHHHHHHC------CHHHCCE
Q ss_conf 179973774-899999999847990-899719989999999----76992--999789998999848------9314679
Q gi|254780924|r 450 HVILVGYGR-IGKVIVQNLKAAGIA-LLVIEDSEKKIEELR----SLGID--VIYGNATITKILLMA------NIEKARS 515 (609)
Q Consensus 450 ~vii~G~g~-~g~~~~~~L~~~~~~-v~vid~~~~~~~~~~----~~g~~--~~~gd~~~~~~l~~~------~i~~a~~ 515 (609)
.++|-|.++ +|+.+++.|.++|.+ +++.+.|++..++.. +.|.+ .+.+|.+|++-.++. ...+.|.
T Consensus 8 ~alVTGas~GIG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~fG~iDi 87 (268)
T PRK06198 8 IALVTGGTQGLGAAIARLFAERGAAGLVICGRSAEKGEAKAAELEALGAKAVFVQADLAKVEDCRAVVAAADEAFGRLDA 87 (268)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 89995857789999999999879938999629888999999999954996799982689999999999999998399989
Q ss_pred EEEEC
Q ss_conf 99935
Q gi|254780924|r 516 LVVSI 520 (609)
Q Consensus 516 vi~~~ 520 (609)
+|-+-
T Consensus 88 LVNnA 92 (268)
T PRK06198 88 LVNAA 92 (268)
T ss_pred EEECC
T ss_conf 99899
No 290
>PRK09242 tropinone reductase; Provisional
Probab=95.90 E-value=0.11 Score=28.42 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=50.8
Q ss_pred CCCCE-EEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----C--CC--CEEECCCCCHHHHHHCC------H
Q ss_conf 47817-997-37748999999998479908997199899999997----6--99--29997899989998489------3
Q gi|254780924|r 447 LCDHV-ILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----L--GI--DVIYGNATITKILLMAN------I 510 (609)
Q Consensus 447 ~~~~v-ii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~--g~--~~~~gd~~~~~~l~~~~------i 510 (609)
+++++ +|- |.+.+|+.+++.|.++|.+|+++|.|++..++..+ + +. ..+..|.+|++..++.- .
T Consensus 8 L~gK~alITGgs~GIG~a~a~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 87 (258)
T PRK09242 8 LDGQTALITGASKGIGLAIARELLGLGADVLIVARDADALAQARDELAEEFPERELHGLAADVSDDEDRRAILDWVEDHW 87 (258)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 79999999484868999999999987998999969889999999999864479729999930799999999999999974
Q ss_pred HHCCEEEEEC
Q ss_conf 1467999935
Q gi|254780924|r 511 EKARSLVVSI 520 (609)
Q Consensus 511 ~~a~~vi~~~ 520 (609)
.+.|.+|-.-
T Consensus 88 g~iDiLVnnA 97 (258)
T PRK09242 88 DGLHILVNNA 97 (258)
T ss_pred CCCCEEEECC
T ss_conf 9997999899
No 291
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=95.89 E-value=0.11 Score=28.39 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=65.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECC-----------CHHHHHHHHHC-CCCEE--E---CC-CCCHHHHHHCCH
Q ss_conf 8179973774899999999847990899719-----------98999999976-99299--9---78-999899984893
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIED-----------SEKKIEELRSL-GIDVI--Y---GN-ATITKILLMANI 510 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~-----------~~~~~~~~~~~-g~~~~--~---gd-~~~~~~l~~~~i 510 (609)
.+++|=|+|.+|+..++.|.+.|.+++.+.+ |.+.+.+..+. +..+- . ++ .++.+.|+.
T Consensus 33 ~~v~IqGfGnVG~~~a~~l~~~GakvvavsD~~G~i~~~~Gldi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 109 (237)
T pfam00208 33 KTVAVQGFGNVGSYAAEKLLELGAKVVAVSDSSGYIYDPNGIDIEELLELKEEGGGRVVEYAGSGAEYISGEELWEI--- 109 (237)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHCCEEECCCCCCCEECCCCCCCCC---
T ss_conf 99999898899999999999879969999828767999999999999999997198431246657534487100047---
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHCCC
Q ss_conf 1467999935996899999999999589880899946----9899999997699
Q gi|254780924|r 511 EKARSLVVSISTAFEAAYITQEARNSNPSILIIALAD----SDSEVEHLTRYGA 560 (609)
Q Consensus 511 ~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~----~~~~~~~l~~~Ga 560 (609)
++|.++-|--....|... +++. ++++|+-.- +++-.+.|++.|+
T Consensus 110 -~~DIliPaA~~~~I~~~n---a~~i--~ak~I~EgAN~p~t~eA~~~L~~rgI 157 (237)
T pfam00208 110 -DCDILVPCATQNEINEEN---AKLI--KAKAVVEGANMPTTPEADEILEERGI 157 (237)
T ss_pred -CCCEEEECCCCCCCCHHH---HHHC--CCCEEEECCCCCCCHHHHHHHHHCCC
T ss_conf -666886445568899899---9862--75489753789889789999998899
No 292
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=95.89 E-value=0.11 Score=28.39 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCCCEEEECCCHHHHH-HHHHHHH----CCCCEEEECC
Q ss_conf 4781799737748999-9999984----7990899719
Q gi|254780924|r 447 LCDHVILVGYGRIGKV-IVQNLKA----AGIALLVIED 479 (609)
Q Consensus 447 ~~~~vii~G~g~~g~~-~~~~L~~----~~~~v~vid~ 479 (609)
...+|+|.|=.-.|.. +|+.+.+ .+.+++.+|.
T Consensus 161 s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC 198 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNC 198 (441)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 89948998999810999999999657877898079878
No 293
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.89 E-value=0.11 Score=28.38 Aligned_cols=69 Identities=14% Similarity=0.317 Sum_probs=50.6
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHCC------HHHCCEEE
Q ss_conf 7997377-48999999998479908997199899999997----6992--9997899989998489------31467999
Q gi|254780924|r 451 VILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMAN------IEKARSLV 517 (609)
Q Consensus 451 vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~~------i~~a~~vi 517 (609)
++|-|.. -+|+.+++.+.++|.++++++.|++..++..+ .|.+ .+..|.+|++-.+++- ....|.+|
T Consensus 11 VvITGASsGIGra~A~~fA~~Ga~Vvl~aR~~~~L~~~a~e~~~~G~~~~~~~~DVsd~~~v~~~~~~~~~~~G~IDvlV 90 (338)
T PRK07109 11 VVITGASAGVGRATARAFARRGAKVVLLARGEEGLEGLAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPIDTWV 90 (338)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99948434999999999998799899998999999999999996398189998017999999999999999849988886
Q ss_pred EE
Q ss_conf 93
Q gi|254780924|r 518 VS 519 (609)
Q Consensus 518 ~~ 519 (609)
.+
T Consensus 91 NN 92 (338)
T PRK07109 91 NN 92 (338)
T ss_pred EC
T ss_conf 54
No 294
>PRK06484 short chain dehydrogenase; Validated
Probab=95.89 E-value=0.078 Score=29.45 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=46.9
Q ss_pred CCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CC--CEEECCCCCHHHHHH
Q ss_conf 47817997--377489999999984799089971998999999976-99--299978999899984
Q gi|254780924|r 447 LCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GI--DVIYGNATITKILLM 507 (609)
Q Consensus 447 ~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~--~~~~gd~~~~~~l~~ 507 (609)
.++++.++ |.+-+|+.+++.|.++|.+|++.|.|++..++..++ |- ..+..|.+|++-.++
T Consensus 272 ~kGKvalVTGaa~GIG~aiA~~la~~GA~Vvi~d~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~ 337 (530)
T PRK06484 272 RAGRVVCVTGGASGIGAAIADRFAALGDRVAIIDSDGEEAVKLREILGGEHLSWQVDITDEASVES 337 (530)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
T ss_conf 789899992876789999999999887989999588899999999739973699953899999999
No 295
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.88 E-value=0.0074 Score=36.53 Aligned_cols=16 Identities=6% Similarity=0.096 Sum_probs=6.7
Q ss_pred EEECCCHHHHHHHHHH
Q ss_conf 9973774899999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQNL 467 (609)
Q Consensus 452 ii~G~g~~g~~~~~~L 467 (609)
+++|+.-....+-+.+
T Consensus 151 llIgaDG~~S~vR~~~ 166 (374)
T PRK06617 151 LLIICDGANSKVRSHY 166 (374)
T ss_pred EEEEECCCCHHHHHHH
T ss_conf 8999579851668874
No 296
>PRK08219 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.071 Score=29.75 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=55.3
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHC--CHHHCCEEEEECC
Q ss_conf 799737-7489999999984799089971998999999976-992999789998999848--9314679999359
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMA--NIEKARSLVVSIS 521 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~--~i~~a~~vi~~~~ 521 (609)
++|-|. +.+|+.++++|.+.+ .+++.+.|++..+++.++ +...+..|.+|++.++++ .+.+.|.+|-+-+
T Consensus 6 alITGas~GIG~aia~~la~~g-~vv~~~r~~~~l~~l~~~~~~~~~~~Dlt~~~~i~~~~~~~~~iD~lVnnAG 79 (226)
T PRK08219 6 ALITGASRGIGAAIARALARTH-TLLLAGRPSERLDAVAARLGATTWPADLTDPEAIAAAVEPLDRLDVLVHNAG 79 (226)
T ss_pred EEEECCCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 9992846499999999999699-8999989889999999970993786057999999999996599889998996
No 297
>PRK07479 consensus
Probab=95.85 E-value=0.043 Score=31.22 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=51.3
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 7997-37748999999998479908997199899999997----699--2999789998999848------931467999
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|- |.+.+|+.+++.|.++|.+|++.|.|++..++..+ .+- ..+.+|.+|++-.+++ ...+.|.+|
T Consensus 8 alITGgs~GIG~a~a~~la~~G~~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~iD~lV 87 (252)
T PRK07479 8 AIVTGAGSGFGEGIAKRFAREGAKVVVADLNAAAAERVASEIADAGGNAIAVAADVSRGADVEALVEAALEAFGRVDIVV 87 (252)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99938876899999999998799999997989999999999985399789999258999999999999999819985999
Q ss_pred EE
Q ss_conf 93
Q gi|254780924|r 518 VS 519 (609)
Q Consensus 518 ~~ 519 (609)
..
T Consensus 88 nn 89 (252)
T PRK07479 88 NN 89 (252)
T ss_pred EC
T ss_conf 89
No 298
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.83 E-value=0.12 Score=28.23 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=49.1
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH-----CCCC--EEECCCCCHHHHHHC------CHHHCCEE
Q ss_conf 799737-748999999998479908997199899999997-----6992--999789998999848------93146799
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS-----LGID--VIYGNATITKILLMA------NIEKARSL 516 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~-----~g~~--~~~gd~~~~~~l~~~------~i~~a~~v 516 (609)
++|-|. +-+|+.+++.|.++|.+|++.|.|++..++..+ .|.+ .+.+|.+|++-.+++ ...+.|.+
T Consensus 10 alVTGa~~GIG~aiA~~~a~~Ga~V~i~~~~~~~~~~~~~~l~~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiL 89 (259)
T PRK07063 10 ALVTGAAQGIGAAIARAFVREGAAVALADLDAALAERAAAAIARQTGARVLALPADVTRAASVRAAVARAEAAFGPLDVL 89 (259)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99958787899999999998799899997987899999999988509918999836899999999999999981998899
Q ss_pred EEE
Q ss_conf 993
Q gi|254780924|r 517 VVS 519 (609)
Q Consensus 517 i~~ 519 (609)
|-.
T Consensus 90 VNN 92 (259)
T PRK07063 90 VNN 92 (259)
T ss_pred EEC
T ss_conf 989
No 299
>PRK08223 hypothetical protein; Validated
Probab=95.83 E-value=0.067 Score=29.92 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=54.2
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECC
Q ss_conf 321347817997377489999999984799-0899719989999999769929997899989998489314679999359
Q gi|254780924|r 443 QKTDLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIS 521 (609)
Q Consensus 443 ~~~~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~ 521 (609)
+..=.+.+|.|+|.|-+|..++..|.+.|. .+.++|.|.--...++++-. +. ....|-
T Consensus 22 Q~kL~~s~VlVvG~GGlGs~~a~~LAraGVG~i~lvD~D~velSNLnRQi~---~~-------~~diG~----------- 80 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGGVHLLTLARLGIGKFNIADFDVFELVNSNRQYG---AM-------MSSNGR----------- 80 (287)
T ss_pred HHHHHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHC---CC-------HHHCCC-----------
T ss_conf 999855968999367557999999998289759997499846344022234---47-------434498-----------
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHCCCCEEEC
Q ss_conf 9689999999999958988089994--6989999999769987876
Q gi|254780924|r 522 TAFEAAYITQEARNSNPSILIIALA--DSDSEVEHLTRYGADTVVM 565 (609)
Q Consensus 522 ~~~~n~~~~~~~~~~~~~~~iia~~--~~~~~~~~l~~~Ga~~vi~ 565 (609)
.....+...+++.||+++|-+.. -++++.+.+-+ |+|.|++
T Consensus 81 --~Kveva~e~l~~INP~v~V~~~~~~lt~~N~~~~l~-~~DvVvD 123 (287)
T PRK08223 81 --PKVEVMREIALDINPELEIRAFPEGIGKENLDTFLD-GVDVYVD 123 (287)
T ss_pred --CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH-CCCEEEE
T ss_conf --589999999998698987999587899899999986-7999997
No 300
>PRK06114 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.092 Score=28.96 Aligned_cols=77 Identities=22% Similarity=0.222 Sum_probs=52.3
Q ss_pred CCCCCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCC-HHH----HHHHHHCCCC--EEECCCCCHHHHHHC-----
Q ss_conf 321347817997--37748999999998479908997199-899----9999976992--999789998999848-----
Q gi|254780924|r 443 QKTDLCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDS-EKK----IEELRSLGID--VIYGNATITKILLMA----- 508 (609)
Q Consensus 443 ~~~~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~-~~~----~~~~~~~g~~--~~~gd~~~~~~l~~~----- 508 (609)
+..++++++.++ |.+.+|+.+++.|.++|.+|++.|.+ ++. .+..++.|-+ .+.+|.+|++-.+++
T Consensus 10 ~lf~L~gKvalVTGa~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~v~~~~ 89 (262)
T PRK06114 10 KLFDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKSDLAAAVARTE 89 (262)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 12498999899968478999999999998799899995897469999999999659958999816899999999999999
Q ss_pred -CHHHCCEEEEE
Q ss_conf -93146799993
Q gi|254780924|r 509 -NIEKARSLVVS 519 (609)
Q Consensus 509 -~i~~a~~vi~~ 519 (609)
...+.|.+|-.
T Consensus 90 ~~~G~iDiLVNn 101 (262)
T PRK06114 90 AELGALTLAVNA 101 (262)
T ss_pred HHCCCCCEEEEC
T ss_conf 981999899989
No 301
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.82 E-value=0.013 Score=34.84 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=6.8
Q ss_pred EEECCCHHHHHHHHH
Q ss_conf 997377489999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQN 466 (609)
Q Consensus 452 ii~G~g~~g~~~~~~ 466 (609)
.++|+.-.-..+-+.
T Consensus 158 llIgaDG~~S~VR~~ 172 (403)
T PRK07333 158 LLVAADGARSKLREL 172 (403)
T ss_pred EEEECCCCCHHHHHH
T ss_conf 999834876132552
No 302
>PRK03612 spermidine synthase; Provisional
Probab=95.81 E-value=0.12 Score=28.17 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=72.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHC--------------CCCEEECCCCCHHHHHHCC
Q ss_conf 134781799737748999999998479-9089971998999999976--------------9929997899989998489
Q gi|254780924|r 445 TDLCDHVILVGYGRIGKVIVQNLKAAG-IALLVIEDSEKKIEELRSL--------------GIDVIYGNATITKILLMAN 509 (609)
Q Consensus 445 ~~~~~~vii~G~g~~g~~~~~~L~~~~-~~v~vid~~~~~~~~~~~~--------------g~~~~~gd~~~~~~l~~~~ 509 (609)
....++|+|+|+|.- -.+-+.|+..+ .+++++|-||+.++-++++ ..+++.+|+ .+.+++..
T Consensus 291 ~~~p~~VLiiGGGdG-~a~revLk~~~ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da--~~~l~~~~ 367 (516)
T PRK03612 291 SPRARRVLILGGGDG-LALREVLKYPDVEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDA--FNWLRKLP 367 (516)
T ss_pred CCCCCEEEEECCCCC-HHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHH--HHHHHHCC
T ss_conf 999773899837760-879998648996637899518899999985721444412323499648985378--99998688
Q ss_pred HHHCCEEEEECCCHHHHH--------HHHHHHHHHCCCCEEEEEECCHHHH--------HHHHHCCC
Q ss_conf 314679999359968999--------9999999958988089994698999--------99997699
Q gi|254780924|r 510 IEKARSLVVSISTAFEAA--------YITQEARNSNPSILIIALADSDSEV--------EHLTRYGA 560 (609)
Q Consensus 510 i~~a~~vi~~~~~~~~n~--------~~~~~~~~~~~~~~iia~~~~~~~~--------~~l~~~Ga 560 (609)
++-|.+|+-.+|+..-. +=.+..+.+.|+..+++.+.++.+. +.++++|-
T Consensus 368 -~~yDvIi~D~pdP~~~~~~~LYs~eFY~~~~~~L~~~G~~v~qs~Sp~~~~~~f~~i~~T~~~~~~ 433 (516)
T PRK03612 368 -ETFDAIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGF 433 (516)
T ss_pred -CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf -878889981899799522467539999999984499958999368975522034689999998388
No 303
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.81 E-value=0.12 Score=28.17 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=66.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE-CCC----------HHHHHHHHHCCCCEEE--CC-CCCHHHHHHCCHHHCC
Q ss_conf 81799737748999999998479908997-199----------8999999976992999--78-9998999848931467
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVI-EDS----------EKKIEELRSLGIDVIY--GN-ATITKILLMANIEKAR 514 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vi-d~~----------~~~~~~~~~~g~~~~~--gd-~~~~~~l~~~~i~~a~ 514 (609)
.+++|=|+|.+|+..++.|.+.|..++.+ |.+ ++.++...+.+....+ ++ .++++.|+ .++|
T Consensus 24 ~~vaVqGfGnVG~~~a~~l~~~GakvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~D 99 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG----LDVD 99 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CCCC
T ss_conf 999998988999999999998599899998578717789998699999999818965366653059865003----6776
Q ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHCCC
Q ss_conf 999935996899999999999589880899946----9899999997699
Q gi|254780924|r 515 SLVVSISTAFEAAYITQEARNSNPSILIIALAD----SDSEVEHLTRYGA 560 (609)
Q Consensus 515 ~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~----~~~~~~~l~~~Ga 560 (609)
.++-|--..+.|.. .+++. +.++|+-.- +++..+.|++.|+
T Consensus 100 IliPaAl~~~I~~~---~a~~i--~ak~I~EgAN~P~t~ea~~iL~~rgI 144 (217)
T cd05211 100 IFAPCALGNVIDLE---NAKKL--KAKVVAEGANNPTTDEALRILHERGI 144 (217)
T ss_pred EEEECCCCCCCCHH---HHHHH--CCEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 89642445887989---99871--77289506789989789999997899
No 304
>PRK07045 putative monooxygenase; Reviewed
Probab=95.81 E-value=0.017 Score=34.07 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=8.1
Q ss_pred EEECCCHHHHHHHHHH
Q ss_conf 9973774899999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQNL 467 (609)
Q Consensus 452 ii~G~g~~g~~~~~~L 467 (609)
+++|+.-..+.+=+.+
T Consensus 156 lvIGADG~~S~vR~~l 171 (388)
T PRK07045 156 VLVGADGARSMIRDDV 171 (388)
T ss_pred EEEECCCCCCHHHHHH
T ss_conf 9999568862788987
No 305
>PRK07588 hypothetical protein; Provisional
Probab=95.80 E-value=0.016 Score=34.15 Aligned_cols=21 Identities=10% Similarity=-0.274 Sum_probs=10.1
Q ss_pred CCEEECHHHHHHHHHHHHHHH
Q ss_conf 987876589999999999874
Q gi|254780924|r 560 ADTVVMSAREIALGMLDRLNQ 580 (609)
Q Consensus 560 a~~vi~p~~~~a~~~~~~l~~ 580 (609)
.-.+..|+.-.+..+-+...+
T Consensus 345 ~~~~~~p~~~~~~~~~~~~~~ 365 (391)
T PRK07588 345 FLWVFASDTIFGKYFSTITMR 365 (391)
T ss_pred CCCCCCCCCHHHHHHHHHHHH
T ss_conf 231115998899999999999
No 306
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=95.79 E-value=0.089 Score=29.08 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=62.9
Q ss_pred CEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0899719989999999----76992999789998999848931467999935996-899999999999589880899946
Q gi|254780924|r 473 ALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSISTA-FEAAYITQEARNSNPSILIIALAD 547 (609)
Q Consensus 473 ~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~ 547 (609)
++.+||+|++..+.+. +.|+.+...+ +-.+.++...-++.|.++.-..=+ ..-..+|...|+.+++++|+.-+.
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~-~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lta 80 (226)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLAD-NGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA 80 (226)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 899993999999999999987899999989-9999999985189999998899999987204356776167960999944
Q ss_pred CHHHHH--HHHHCCCCEEECHHH
Q ss_conf 989999--999769987876589
Q gi|254780924|r 548 SDSEVE--HLTRYGADTVVMSAR 568 (609)
Q Consensus 548 ~~~~~~--~l~~~Ga~~vi~p~~ 568 (609)
..+..+ .-.++|||.-+.-.+
T Consensus 81 ~~~~~d~i~~l~~GADDYl~KPf 103 (226)
T PRK09836 81 LGTIEHRVKGLELGADDYLVKPF 103 (226)
T ss_pred CCCHHHHHHHHHCCCCEEEECCC
T ss_conf 58988999999769968863687
No 307
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.78 E-value=0.12 Score=28.09 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=65.7
Q ss_pred CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHH-----------------------HHHHH--C
Q ss_conf 111222321347817997377489999999984799-089971998999-----------------------99997--6
Q gi|254780924|r 437 QQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKI-----------------------EELRS--L 490 (609)
Q Consensus 437 ~~~~~~~~~~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~-----------------------~~~~~--~ 490 (609)
....+.+..=.+.||+|+|.|-.|..++..|...|. .+.++|.|.--. +++++ .
T Consensus 127 ~iG~~GQ~kL~~a~VlivG~GGLGs~~a~yLA~aGVG~i~lvD~D~Ve~SNL~RQil~~~~diG~~Ka~~a~~~L~~~Np 206 (379)
T PRK08762 127 QVGEEGQRRLARARVLLIGAGGLGSPAAFYLAAAGVGHLRIADHDVVDRSNLQRQILHTEDSVGQPKVDSAAQRIAALNP 206 (379)
T ss_pred CCCHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 26999999997397899888755799999999837975897628861334501125746433555589999999998689
Q ss_pred CCCE--EECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 9929--9978999899984893146799993599689999999999958
Q gi|254780924|r 491 GIDV--IYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSN 537 (609)
Q Consensus 491 g~~~--~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~ 537 (609)
.+++ +.... +++..++. +++.|.++-++||.++-..+-..+.+.+
T Consensus 207 ~i~i~~~~~~l-~~~n~~~l-i~~~DlViDctDN~~tR~liN~~c~~~~ 253 (379)
T PRK08762 207 RVQVEAVQTRV-TSSNVEAL-LQDVDVVVDGADNFPARYLLNDACVKLG 253 (379)
T ss_pred CCCEEEEHHCC-CHHHHHHH-HHHCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 97338502108-98999999-8628899986887788999999999979
No 308
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=95.78 E-value=0.023 Score=33.07 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=50.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCC-EEECCCCCHHHHHHCCHHHCC
Q ss_conf 17997377489999999984799089971998999999976992-999789998999848931467
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGID-VIYGNATITKILLMANIEKAR 514 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~-~~~gd~~~~~~l~~~~i~~a~ 514 (609)
.|||+|.|+.|...|+.+.+.|.+|+++|... .-+++ ..|||+-.+..++.......|
T Consensus 2 DVvvvGaGPaG~~aA~~~A~~G~~Vllle~~~-------~~r~P~k~CGg~~~~~~~~~~~~~~~d 60 (343)
T TIGR02032 2 DVVVVGAGPAGSSAAYRLAKKGLRVLLLEKKS-------FPRYPGKPCGGALSPRVLEELVLPGPD 60 (343)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEEEHH-------HCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 38998277468999999995697388985045-------079886005776670013113678888
No 309
>PRK07775 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.12 Score=28.09 Aligned_cols=73 Identities=19% Similarity=0.125 Sum_probs=53.7
Q ss_pred CCCEEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHC------CHHHCC
Q ss_conf 7817997377-48999999998479908997199899999997----699--2999789998999848------931467
Q gi|254780924|r 448 CDHVILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMA------NIEKAR 514 (609)
Q Consensus 448 ~~~vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~------~i~~a~ 514 (609)
+..++|.|.+ -+|+.+|+.|.++|.+|++.+.|+++++++.+ +|- ..+..|.+|++-.+++ ...+.|
T Consensus 10 ~KtAlVTGAssGIG~aiA~~la~~G~~V~l~~R~~e~l~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iD 89 (275)
T PRK07775 10 RRPAIVAGASSGIGAATAIELAAHGFPVALGARRVEKCEEIVDKIRADGGEAVAFPLDVTDPDSVKSFVAQATEALGDIE 89 (275)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99799946235999999999998799899998989999999999996499489999128999999999999999859965
Q ss_pred EEEEEC
Q ss_conf 999935
Q gi|254780924|r 515 SLVVSI 520 (609)
Q Consensus 515 ~vi~~~ 520 (609)
.+|..-
T Consensus 90 iLVnNA 95 (275)
T PRK07775 90 VLVSGA 95 (275)
T ss_pred EEEECC
T ss_conf 999767
No 310
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.12 Score=28.08 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=53.9
Q ss_pred CCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHC------CHH
Q ss_conf 347817997--37748999999998479908997199899999997----699--2999789998999848------931
Q gi|254780924|r 446 DLCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMA------NIE 511 (609)
Q Consensus 446 ~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~------~i~ 511 (609)
+++++++++ |.+.+|+.+|+.|.++|.+|++.+.|++..++..+ .|. .++..|.+|++-.++. ...
T Consensus 7 ~L~gKvalITGgs~GIG~aia~~la~~Ga~V~i~~~~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~G 86 (263)
T PRK07814 7 RLDGQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 89999899958966899999999998799899996989999999999985299289998158999999999999999829
Q ss_pred HCCEEEEEC
Q ss_conf 467999935
Q gi|254780924|r 512 KARSLVVSI 520 (609)
Q Consensus 512 ~a~~vi~~~ 520 (609)
+.|.+|...
T Consensus 87 ~iDiLVnNA 95 (263)
T PRK07814 87 RLDIVVNNV 95 (263)
T ss_pred CCCEEEECC
T ss_conf 988999898
No 311
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.77 E-value=0.033 Score=32.03 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=51.5
Q ss_pred CCEEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHC------CHHHCCE
Q ss_conf 817997377-48999999998479908997199899999997----699--2999789998999848------9314679
Q gi|254780924|r 449 DHVILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMA------NIEKARS 515 (609)
Q Consensus 449 ~~vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~------~i~~a~~ 515 (609)
..++|-|.+ -+|+.+|+.|.++|.+|++++.|+|..++..+ .|- .++..|.+|++-.++. .....|.
T Consensus 377 KvalITGASSGIG~A~A~~LA~~GA~Vvl~AR~~e~Le~v~~ei~~~Gg~a~~~~~DVtd~~~v~~lv~~i~~~~G~IDV 456 (663)
T PRK07201 377 KHVIITGASSGIGRATAIKVAEAGATVFALARDGEKLDELVAEIRARGGQAHAYTCDLTDSASVEHTVKDILGRHGHVDY 456 (663)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 47999388759999999999987998999989999999999999955991899996279999999999999996799888
Q ss_pred EEEE
Q ss_conf 9993
Q gi|254780924|r 516 LVVS 519 (609)
Q Consensus 516 vi~~ 519 (609)
+|.+
T Consensus 457 LVNN 460 (663)
T PRK07201 457 LVNN 460 (663)
T ss_pred EEEC
T ss_conf 9989
No 312
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.031 Score=32.23 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=47.4
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEE
Q ss_conf 799737-748999999998479908997199899999997699299978999899984893146799993
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVS 519 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~ 519 (609)
|+|.|. |-+|+.+++.|.++|++|+.+|..+....... .+...+.+|.+|.+..++.--...|.++-+
T Consensus 3 iLVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~d~vih~ 71 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-SGVEFVVLDLTDRDLVDELAKGVPDAVIHL 71 (314)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC-CCCCEEECCCCCHHHHHHHHCCCCCEEEEC
T ss_conf 999928877799999999858997999917875431124-676434225335678998854588789988
No 313
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.76 E-value=0.06 Score=30.23 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=51.5
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 799737-748999999998479908997199899999997----699--2999789998999848------931467999
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|.|. +.+|+.+++.|.++|.+|++.|.|++..++..+ .+. ..+.+|.+|++-.++. ...+.|.+|
T Consensus 7 alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iDiLV 86 (258)
T PRK12429 7 ALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAKAAEAIKKAGGKAIGVAMDVTDEEAINAGIDKVVETFGGVDILV 86 (258)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99948875899999999998799999997988999999999984499189998358999999999999999829970999
Q ss_pred EEC
Q ss_conf 935
Q gi|254780924|r 518 VSI 520 (609)
Q Consensus 518 ~~~ 520 (609)
-..
T Consensus 87 nnA 89 (258)
T PRK12429 87 NNA 89 (258)
T ss_pred ECC
T ss_conf 899
No 314
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.74 E-value=0.038 Score=31.62 Aligned_cols=108 Identities=17% Similarity=0.251 Sum_probs=64.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHC--------C-CCEEECCCCCHHHHHHCCHHHCCEEEE
Q ss_conf 17997377489999999984799--089971998999999976--------9-929997899989998489314679999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSL--------G-IDVIYGNATITKILLMANIEKARSLVV 518 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~--------g-~~~~~gd~~~~~~l~~~~i~~a~~vi~ 518 (609)
.|-|+|.|.+|..+|-.|..++. +++++|.|+++.+-...+ + ..+..|| . + .+.++|.+|.
T Consensus 2 KI~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~DL~~a~~~~~~~~i~~~~---~---~--~l~daDvVVi 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGD---Y---A--DCKGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC---H---H--HHCCCCEEEE
T ss_conf 799999488899999999867998879999188984512568766241036881684099---9---9--9779999998
Q ss_pred ECCC---------H--HHHH----HHHHHHHHHCCCCEEEEEECCHHHHH--HHHH-CC--CCEEECH
Q ss_conf 3599---------6--8999----99999999589880899946989999--9997-69--9878765
Q gi|254780924|r 519 SIST---------A--FEAA----YITQEARNSNPSILIIALADSDSEVE--HLTR-YG--ADTVVMS 566 (609)
Q Consensus 519 ~~~~---------~--~~n~----~~~~~~~~~~~~~~iia~~~~~~~~~--~l~~-~G--a~~vi~p 566 (609)
+-+. | +.|. .++...++.+|+..+ ..+.||-+.- ..++ .| -++|+--
T Consensus 74 taG~~rk~g~tR~dll~~Na~I~~~i~~~i~~~~p~~iv-ivvsNPvDv~t~~~~k~sg~p~~rViG~ 140 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAIL-LVVTNPVDVLTYVAYKLSGLPPNRVIGS 140 (308)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE-EECCCCHHHHHHHHHHHCCCCCHHEEEC
T ss_conf 999999989987899988899999999999841998089-9727954789999999729980226602
No 315
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.74 E-value=0.081 Score=29.36 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=74.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 78179973774899999999847990899719989999999769929997899989998489314679999359968999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
+.+|+=+|.|+. ..+++.|.++|.+++.+|-|+++. . +|.+.+.-|.|+|+.-- -+.|+.+-+.-+-.|.-.
T Consensus 14 ~gkVvEVGiG~~-~~VA~~L~e~g~dv~atDI~~~~a---~-~g~~~v~DDitnP~~~i---Y~~A~lIYSiRpppEl~~ 85 (129)
T COG1255 14 RGKVVEVGIGFF-LDVAKRLAERGFDVLATDINEKTA---P-EGLRFVVDDITNPNISI---YEGADLIYSIRPPPELQS 85 (129)
T ss_pred CCCEEEECCCHH-HHHHHHHHHCCCCEEEEECCCCCC---C-CCCEEEECCCCCCCHHH---HHCCCCEEECCCCHHHHH
T ss_conf 883799814117-999999997488689985230137---6-55338872477964777---627001266279889989
Q ss_pred HHHHHHHHHCCCCEEEEEECCH
Q ss_conf 9999999958988089994698
Q gi|254780924|r 528 YITQEARNSNPSILIIALADSD 549 (609)
Q Consensus 528 ~~~~~~~~~~~~~~iia~~~~~ 549 (609)
.+...+|+.+..+.|.--..++
T Consensus 86 ~ildva~aVga~l~I~pL~Ge~ 107 (129)
T COG1255 86 AILDVAKAVGAPLYIKPLTGEP 107 (129)
T ss_pred HHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999998609978997168997
No 316
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.72 E-value=0.088 Score=29.12 Aligned_cols=82 Identities=12% Similarity=0.246 Sum_probs=56.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEE--------CCCHHHHHHHHHCCCCEEECCCCCHHHHHH---------
Q ss_conf 347817997377489999999984799-08997--------199899999997699299978999899984---------
Q gi|254780924|r 446 DLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVI--------EDSEKKIEELRSLGIDVIYGNATITKILLM--------- 507 (609)
Q Consensus 446 ~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vi--------d~~~~~~~~~~~~g~~~~~gd~~~~~~l~~--------- 507 (609)
..-++|+|+|.|.++--.++...+.|. +|+++ ..+++.++++.++|.+..+.-...+ +..+
T Consensus 265 ~~Gk~VvVIGGGntAmD~artA~RlGa~~V~ivyrr~~~~MpA~~~Ei~~A~eEGV~~~~~~~p~~-i~~~~g~v~gl~~ 343 (560)
T PRK12771 265 KLGKRVVVIGGGNTAMDAARTARRLGAEEVVIVYRRTREEMPAHAFEIDDALREGVEINWLRTPVE-VEKDEDGVTGLRV 343 (560)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCEE-EECCCCEEEEEEE
T ss_conf 568868998998228999999997389769998314420289998999878747956896346479-9806985989999
Q ss_pred ----------------CCHHHCCEEEEECCCHHHHHH
Q ss_conf ----------------893146799993599689999
Q gi|254780924|r 508 ----------------ANIEKARSLVVSISTAFEAAY 528 (609)
Q Consensus 508 ----------------~~i~~a~~vi~~~~~~~~n~~ 528 (609)
...-++|.+|.+++.......
T Consensus 344 ~~~~~~e~g~~~~~g~~~~i~aD~VI~AiGq~~d~~~ 380 (560)
T PRK12771 344 EKMELDEKGEPGPTGEFFTLEADMVVLAIGQDTDSEF 380 (560)
T ss_pred EEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCH
T ss_conf 9999889988788997267546899992257887300
No 317
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.72 E-value=0.071 Score=29.73 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=55.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHH---------------------HHHHHHHCCCCEEECCCC--C
Q ss_conf 13478179973774899999999847990899719989---------------------999999769929997899--9
Q gi|254780924|r 445 TDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEK---------------------KIEELRSLGIDVIYGNAT--I 501 (609)
Q Consensus 445 ~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~---------------------~~~~~~~~g~~~~~gd~~--~ 501 (609)
.....+|-|+|.|+.|-..|..|.+.|++|+|.|..++ .++.+.+.|++..++=.. +
T Consensus 547 ~~tgKKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRLPk~vIdreI~~l~~~GV~f~tnvg~dit 626 (1032)
T PRK09853 547 SGSRHPVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGVVKNIIPEFRIPAELIQHDIDFVAAHGVKFEYGCSPDLT 626 (1032)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 78899799989688999999999977993699815897884267358876789999999999999779699969999888
Q ss_pred HHHHHHCCHHHCCEEEEECC
Q ss_conf 89998489314679999359
Q gi|254780924|r 502 TKILLMANIEKARSLVVSIS 521 (609)
Q Consensus 502 ~~~l~~~~i~~a~~vi~~~~ 521 (609)
.+-|++ +.-|+|+++++
T Consensus 627 le~L~~---eGyDAVfLa~G 643 (1032)
T PRK09853 627 VEQLKN---QGYHYVLLAIG 643 (1032)
T ss_pred HHHHHH---CCCCEEEEECC
T ss_conf 999965---79999999458
No 318
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=95.72 E-value=0.13 Score=27.92 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=70.6
Q ss_pred HHCCCCEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHC--CCC
Q ss_conf 847990899719989999999----7699299978999899984893146799993599-689999999999958--988
Q gi|254780924|r 468 KAAGIALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSN--PSI 540 (609)
Q Consensus 468 ~~~~~~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~--~~~ 540 (609)
..++.++.++|+|+...+-++ +.|++.+.-=..-.+.++...-++.|.++.-..= +-.....+...|+.. ++.
T Consensus 2 ~~k~lrILivDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~~ 81 (129)
T PRK10610 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSAL 81 (129)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 89998999997989999999999998699789998999999999985899999981899999899999999857777899
Q ss_pred EEEEEE--CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHH
Q ss_conf 089994--6989999999769987876589999999999874
Q gi|254780924|r 541 LIIALA--DSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQ 580 (609)
Q Consensus 541 ~iia~~--~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~ 580 (609)
+++.-+ .++++.....++|++..+.-... ..++.+.+.+
T Consensus 82 Pii~~T~~~~~~~~~~a~~~Ga~~yl~KP~~-~~~L~~~i~~ 122 (129)
T PRK10610 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFT-AATLEEKLNK 122 (129)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHH
T ss_conf 6899988689999999998699889989899-9999999999
No 319
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.71 E-value=0.083 Score=29.28 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=63.9
Q ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHH-----------------------HHHHHC--CC--C
Q ss_conf 2321347817997377489999999984799-089971998999-----------------------999976--99--2
Q gi|254780924|r 442 IQKTDLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKI-----------------------EELRSL--GI--D 493 (609)
Q Consensus 442 ~~~~~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~-----------------------~~~~~~--g~--~ 493 (609)
.++.=.+.+|+|+|.|-.|..++..|...|. ++.++|.|.-.. +++++- .. .
T Consensus 26 gQ~kL~~s~VlivG~GGlG~~~~~~La~aGvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i~ 105 (245)
T PRK05690 26 GQEKLKAARVLVVGLGGLGCAAAQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAIE 105 (245)
T ss_pred HHHHHHHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 99999719789987777789999999985996599996886788867888645987789887999999999758875226
Q ss_pred EEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 99978999899984893146799993599689999999999958
Q gi|254780924|r 494 VIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSN 537 (609)
Q Consensus 494 ~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~ 537 (609)
.+....+ ++..++ -+++.|.++-++||.+.-..+-..+.+.+
T Consensus 106 ~~~~~i~-~~n~~~-li~~~DlViD~~Dn~~~R~~ln~~c~~~~ 147 (245)
T PRK05690 106 TINARLD-DDELAA-LIAAHDLVLDCTDNVATRNQLNAACFAAK 147 (245)
T ss_pred EEHHCCC-HHHHHH-HHHCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 3331448-889988-75078889987899999999999999719
No 320
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.71 E-value=0.12 Score=28.24 Aligned_cols=99 Identities=17% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC-EEEECCCHHHHHHHHHC---------------------------CCC--EEE
Q ss_conf 478179973774899999999847990-89971998999999976---------------------------992--999
Q gi|254780924|r 447 LCDHVILVGYGRIGKVIVQNLKAAGIA-LLVIEDSEKKIEELRSL---------------------------GID--VIY 496 (609)
Q Consensus 447 ~~~~vii~G~g~~g~~~~~~L~~~~~~-v~vid~~~~~~~~~~~~---------------------------g~~--~~~ 496 (609)
.+.||+|+|.|-.|..+++.|...|.. +.++|.|.-....+.++ ..+ ++.
T Consensus 18 ~~s~VlVvG~GGLG~~v~~~La~aGVg~i~ivD~D~Ve~sNL~RQ~l~~~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~ 97 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVE 97 (198)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 70989998778899999999997499869999599635335775750265411168729999999999779997799982
Q ss_pred CCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 78999899984893146799993599689999999999958988089994
Q gi|254780924|r 497 GNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 497 gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~ 546 (609)
.+....+.-.+.-+++.|.++-+++|.++-..+-..+++++ .+-|.+.+
T Consensus 98 ~~~~~~~~n~~~~~~~~DlVvd~~dn~~~r~~in~~c~~~~-iPlI~ga~ 146 (198)
T cd01485 98 EDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHH-IPFISCAT 146 (198)
T ss_pred CCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHC-CCEEEEEC
T ss_conf 24457786899998489999999999999999999999929-98899974
No 321
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.71 E-value=0.1 Score=28.69 Aligned_cols=34 Identities=32% Similarity=0.580 Sum_probs=28.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHH
Q ss_conf 17997377489999999984799-08997199899
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKK 483 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~ 483 (609)
+|.|+|.|.+|..+++.|...|. ++.++|.|.-.
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~~i~ivD~D~v~ 35 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99999979899999999999379719999789875
No 322
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=95.70 E-value=0.048 Score=30.92 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=62.0
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH-HCCCCEEECCCCCHHHHHHCCH-HHCCEEEEECC------
Q ss_conf 79973-774899999999847990899719989999999-7699299978999899984893-14679999359------
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELR-SLGIDVIYGNATITKILLMANI-EKARSLVVSIS------ 521 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~-~~g~~~~~gd~~~~~~l~~~~i-~~a~~vi~~~~------ 521 (609)
|+|.| .|-+|+++++.|.++|++|..++.++....... ....+.+.+|.+|++.++++-- .+.|.++=+-.
T Consensus 1 ILItGasGfiG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~D~VihlAa~~~~~~ 80 (235)
T pfam01370 1 ILVTGGTGFIGSALVRRLLQEGYEVIVLGRRRRSESLNTGRIRFRFHEGDLTDPDALERLLAEVQPDAVIHLAAQSGVGA 80 (235)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHH
T ss_conf 79972897999999999997879899998997301222114676599965889999999985389989998977478326
Q ss_pred ---CH----HHHH----HHHHHHHHHCCCCEEEE
Q ss_conf ---96----8999----99999999589880899
Q gi|254780924|r 522 ---TA----FEAA----YITQEARNSNPSILIIA 544 (609)
Q Consensus 522 ---~~----~~n~----~~~~~~~~~~~~~~iia 544 (609)
++ +.|. .+...+++.+.+ ++|-
T Consensus 81 ~~~~~~~~~~~N~~~t~~ll~~~~~~~~~-~~I~ 113 (235)
T pfam01370 81 SFEDPAEFIRANVLGTLNLLEAARRAGVK-RFVF 113 (235)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEE
T ss_conf 55199999999999999999999983999-8999
No 323
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.70 E-value=0.096 Score=28.84 Aligned_cols=96 Identities=21% Similarity=0.312 Sum_probs=60.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECC--CHHHH
Q ss_conf 8179973774899999999847990899719989999999769929997899989998489314679999359--96899
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIS--TAFEA 526 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~--~~~~n 526 (609)
..+-|+|+|++|+.+++.+...|.++...|..... ++....+-+. ++. +.++|.+.+..+ ++..+
T Consensus 123 ktvGIiG~G~IG~~vA~~~~afg~~V~~~~r~~~~------~~~~~~~~~~--~el-----l~~sDivslh~Plt~~T~~ 189 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEP--EDI-----MKKSDFVLISLPLTDETRG 189 (303)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCC------CCCCEEECCH--HHH-----HHHCCEEEEECCCCHHHHH
T ss_conf 88999897656999999999779889998985322------4574552689--999-----9759999992578655677
Q ss_pred HHHHHHHHHHCCCCEEEEEEC-----CHHHHHHHHH
Q ss_conf 999999999589880899946-----9899999997
Q gi|254780924|r 527 AYITQEARNSNPSILIIALAD-----SDSEVEHLTR 557 (609)
Q Consensus 527 ~~~~~~~~~~~~~~~iia~~~-----~~~~~~~l~~ 557 (609)
+.-....+..-++..+|-.++ ..+-.+.|++
T Consensus 190 lI~~~~l~~MK~~a~lIN~aRG~iVde~aL~~aL~~ 225 (303)
T PRK06436 190 MINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCEECHHHHHHHHHH
T ss_conf 768999985699978999278654689999999981
No 324
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=95.68 E-value=0.052 Score=30.70 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=52.8
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-C--CCEEECCCCCHHHHHHC------CHHHCCEEEEEC
Q ss_conf 79973-77489999999984799089971998999999976-9--92999789998999848------931467999935
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-G--IDVIYGNATITKILLMA------NIEKARSLVVSI 520 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g--~~~~~gd~~~~~~l~~~------~i~~a~~vi~~~ 520 (609)
++|-| .+-+|+.+++.|.++|.+|++.+.|+++.+++.++ + ...+..|.+|++-.+++ ...+.|.+|.+-
T Consensus 3 vlVTGassGIG~a~A~~la~~Ga~Vv~~~r~~~~l~~l~~~lg~~~~~~~~Dvsd~~~v~~~~~~~~~~~g~iDiLVnNA 82 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQNGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDILVNNA 82 (248)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99988866999999999998799999998999999999998488679999734888999999999999709975999778
No 325
>PRK09291 short chain dehydrogenase; Provisional
Probab=95.67 E-value=0.13 Score=27.89 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=52.9
Q ss_pred CCEEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHCCHHHCCEEEEEC
Q ss_conf 817997377-48999999998479908997199899999997----699--2999789998999848931467999935
Q gi|254780924|r 449 DHVILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMANIEKARSLVVSI 520 (609)
Q Consensus 449 ~~vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~~i~~a~~vi~~~ 520 (609)
..++|-|.+ .+|+.+|+.|.++|++|++.+.+++..+++.+ .+. .++..|.+|+.-..++.-.+.|.+|..-
T Consensus 3 K~vLITGAssGIGraiA~~la~~G~~Vi~~~r~~~~l~~l~~~~~~~g~~~~~~~lDv~~~~~~~~~~~~~iDvLVNNA 81 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHRVIAGVQIAPQVTELRAEAARRGLALRVEKLDLTDAIDRARAAEWDVDVLLNNA 81 (257)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCCEEEECC
T ss_conf 9899968985899999999998799899996878999999999985299559998988999999998089999999898
No 326
>COG2985 Predicted permease [General function prediction only]
Probab=95.67 E-value=0.14 Score=27.79 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHCC-C-----CHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHC
Q ss_conf 999999999998708-8-----8679999999962741038558478999999999999998825416889---998415
Q gi|254780924|r 8 FVLAFIFGAIANRCR-L-----PTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVK---DLISVR 78 (609)
Q Consensus 8 l~~a~i~g~la~rl~-l-----P~i~~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~---~l~~~~ 78 (609)
+++..-.+....|+| . -...+=++.|..+|..++.+.. +.+.+ |+|+++..+..|+|--+. .+|+.+
T Consensus 13 Lvvvl~lgl~~gkIr~fG~gigg~l~g~L~Vgl~l~~~~~~i~~--~~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~G 88 (544)
T COG2985 13 LFVVLALGLGFGKIRGFGLGIGGVLFGVLFVGLFLGQYGFTINT--DMLHF--ELGLILFVYTIGLEAGPGFFSSFRKSG 88 (544)
T ss_pred HHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC--CHHHH--HHHHHHHHHHHHHEECCCHHHHHHHHH
T ss_conf 99999987500237885023245003576799885125651145--41222--245657523102412620768998731
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 15889989999999999999999967886899--9999999742389999876565541144057898998
Q gi|254780924|r 79 GIALPGALIQIILGTALGALMGMVMGWSLGGS--VVFGLALSIASTVVLLKALQENRILETDRGKIAVGWL 147 (609)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~a--ll~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~ 147 (609)
++....+++-++......+....++++|.... ++-|+..+..+.+-+...+++.........+...+.+
T Consensus 89 l~~~~~allivi~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~~~L~~l~~~~~~~~~~~~gYa 159 (544)
T COG2985 89 LNLNAFALLIVIAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQDILRELGAPSQALDQMGMGYA 159 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 68889999999999999988664338977776531024333880278899987750663345652203466
No 327
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.66 E-value=0.066 Score=29.98 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=65.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH--
Q ss_conf 7817997377489999999984799-089971998999999976-992999789998999848931467999935996--
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTA-- 523 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-- 523 (609)
..+++|+|.|..++.++..|.+.|. ++.+.+.|+++.+.+.++ +.....-+..+. + -..++.|.+|-||+-.
T Consensus 19 ~k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~~~~~~~~---~-~~~~~~dliIN~tp~G~~ 94 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDL---E-ELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCH---H-HHHCCCCEEEECCCCCCC
T ss_conf 999999867589999999999719982288608999999999985013664010453---4-431568879876778777
Q ss_pred -HHHHHHHHHHHHHCCCCEEEEEEC---CHHHHHHHHHCCCCEEECH
Q ss_conf -899999999999589880899946---9899999997699878765
Q gi|254780924|r 524 -FEAAYITQEARNSNPSILIIALAD---SDSEVEHLTRYGADTVVMS 566 (609)
Q Consensus 524 -~~n~~~~~~~~~~~~~~~iia~~~---~~~~~~~l~~~Ga~~vi~p 566 (609)
..+... ......++..++=.+- .....+..++.|.. +++=
T Consensus 95 ~~~~~p~--~~~~~~~~~~~~D~iY~P~~T~ll~~a~~~g~~-~i~G 138 (155)
T cd01065 95 PGDELPL--PPSLLKPGGVVYDVVYNPLETPLLKEARALGAK-TIDG 138 (155)
T ss_pred CCCCCCC--CHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCE-EECC
T ss_conf 8776767--887759986898653178788999999998395-8773
No 328
>PRK08643 acetoin reductase; Validated
Probab=95.65 E-value=0.053 Score=30.61 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=50.6
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 7997-37748999999998479908997199899999997----6992--999789998999848------931467999
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|- |.+.+|+.+++.|.++|.+|++.|.|++..++..+ .+.+ .+.+|.+|++-.+++ ...+.|.+|
T Consensus 5 alVTGg~~GIG~aia~~la~~Ga~V~i~d~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLV 84 (256)
T PRK08643 5 ALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAKAAADKLSSDGGKAIAVKADVSNRDQVFDAVQQVVDTFGDLNVVV 84 (256)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99957578899999999998799999996988999999999985399099998058999999999999999829987999
Q ss_pred EE
Q ss_conf 93
Q gi|254780924|r 518 VS 519 (609)
Q Consensus 518 ~~ 519 (609)
-.
T Consensus 85 Nn 86 (256)
T PRK08643 85 NN 86 (256)
T ss_pred EC
T ss_conf 89
No 329
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.65 E-value=0.11 Score=28.30 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=48.3
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCC-HHHH----HHHHHCCCC--EEECCCCCHHHHHHC------CHHHCCEE
Q ss_conf 7997-37748999999998479908997199-8999----999976992--999789998999848------93146799
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDS-EKKI----EELRSLGID--VIYGNATITKILLMA------NIEKARSL 516 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~-~~~~----~~~~~~g~~--~~~gd~~~~~~l~~~------~i~~a~~v 516 (609)
++|- |...+|+.+|+.|.++|.+|++.+.| ++.. +++++.|.+ .+.+|.+|++..+++ ...+.|.+
T Consensus 9 alVTGas~GIG~aiA~~la~~Ga~Vvi~~~~~~~~a~~~~~~i~~~g~~a~~~~~Dvtd~~~v~~l~~~~~~~~G~iDiL 88 (248)
T PRK07806 9 ALVTGSSRGIGAEVAKYLAGAGAHVVVNYRNKAARAEKVVAEIRAAGGRASAVGADLTDEASVAALMDAIRAEFGGLDAL 88 (248)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99937885999999999998799899983895689999999999619839999789999999999999999984999899
Q ss_pred EE
Q ss_conf 99
Q gi|254780924|r 517 VV 518 (609)
Q Consensus 517 i~ 518 (609)
|.
T Consensus 89 Vn 90 (248)
T PRK07806 89 VL 90 (248)
T ss_pred EE
T ss_conf 98
No 330
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.63 E-value=0.14 Score=27.71 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=51.9
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHC------CHHHCCEE
Q ss_conf 1799737-748999999998479908997199899999997----6992--999789998999848------93146799
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMA------NIEKARSL 516 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~------~i~~a~~v 516 (609)
-++|-|. ..+|+.+|+.|.++|++|++++.|++..++..+ .|.+ .+..|.+|++-.+++ ...+.|.+
T Consensus 8 valITGas~GIG~a~A~~la~~G~~V~l~~R~~~~l~~~~~e~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiL 87 (241)
T PRK07454 8 TALITGASRGIGKATALAFAKAGWDLALVARSQDALEALAEELRSTGVKVAAYSIDLSNPEAIAPGIAELLEQFGCPSVL 87 (241)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 89991758789999999999879989999899999999999999659928999951899999999999999975998899
Q ss_pred EEEC
Q ss_conf 9935
Q gi|254780924|r 517 VVSI 520 (609)
Q Consensus 517 i~~~ 520 (609)
|-.-
T Consensus 88 VnNA 91 (241)
T PRK07454 88 INNA 91 (241)
T ss_pred EECC
T ss_conf 9889
No 331
>PRK09186 flagellin modification protein A; Provisional
Probab=95.61 E-value=0.14 Score=27.64 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=50.2
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----CC--CEEECCCCCHHHHHHC------CHHHCCEE
Q ss_conf 7997-377489999999984799089971998999999976-----99--2999789998999848------93146799
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----GI--DVIYGNATITKILLMA------NIEKARSL 516 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g~--~~~~gd~~~~~~l~~~------~i~~a~~v 516 (609)
++|- |.+.+|+.+++.|.++|.+|++.|.|+++.++..++ +. ..+.+|.+|++-.++. ...+.|.+
T Consensus 7 ~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~~~g~id~l 86 (255)
T PRK09186 7 ILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQERYGKIDGA 86 (255)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99979586899999999998799999996988999999999987059807999846899999999999999981997789
Q ss_pred EEE
Q ss_conf 993
Q gi|254780924|r 517 VVS 519 (609)
Q Consensus 517 i~~ 519 (609)
|-+
T Consensus 87 Vnn 89 (255)
T PRK09186 87 VNC 89 (255)
T ss_pred EEC
T ss_conf 975
No 332
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=95.60 E-value=0.14 Score=27.64 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=18.4
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHHH
Q ss_conf 799737748999999998479--908997199899999997
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAG--IALLVIEDSEKKIEELRS 489 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~--~~v~vid~~~~~~~~~~~ 489 (609)
|+|+|.|=+|..++.+|++.+ ++|.++|.+.+...+-+.
T Consensus 6 vvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 6 VVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 99989738989999999973889659999705765333456
No 333
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.56 E-value=0.15 Score=27.54 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=49.9
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH----HCCC--CEEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 7997-3774899999999847990899719989999999----7699--2999789998999848------931467999
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELR----SLGI--DVIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~----~~g~--~~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|- |.+.+|+.+++.|.++|.+|++.|.|++..++.. +++- ..+.+|.+|++-.++. ...+.|.+|
T Consensus 9 alITGgs~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~lv 88 (253)
T PRK12826 9 ALVTGAARGIGRAIAVRFAADGADVIVVDICGQAAAATAELVAAAGGKARAYQVDVRDRAALKALVAAGVERFGRLDILV 88 (253)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99948977899999999998799899998988999999999985099589999517999999999999999839987899
Q ss_pred EEC
Q ss_conf 935
Q gi|254780924|r 518 VSI 520 (609)
Q Consensus 518 ~~~ 520 (609)
-+.
T Consensus 89 nnA 91 (253)
T PRK12826 89 ANA 91 (253)
T ss_pred ECC
T ss_conf 899
No 334
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.56 E-value=0.072 Score=29.70 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=33.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC-EEEECCCH------------------HHHHHHHHCCCCEEE
Q ss_conf 78179973774899999999847990-89971998------------------999999976992999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIA-LLVIEDSE------------------KKIEELRSLGIDVIY 496 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~-v~vid~~~------------------~~~~~~~~~g~~~~~ 496 (609)
-.+|+|+|.|.++-..++...+.|.+ |...|..+ ..++.+.++|.+..+
T Consensus 281 Gk~VvVIGGGntAmD~arta~R~GA~~V~rr~~~~mp~~~~~~~~~~~~~~~~~ev~~A~eEGv~~~~ 348 (472)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTSIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKFEVSNAHEEGVEREF 348 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 76589989866899999999973896899975114881323323723233468889999974882573
No 335
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.55 E-value=0.03 Score=32.33 Aligned_cols=21 Identities=10% Similarity=0.403 Sum_probs=10.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHH
Q ss_conf 3478179973774899999999
Q gi|254780924|r 446 DLCDHVILVGYGRIGKVIVQNL 467 (609)
Q Consensus 446 ~~~~~vii~G~g~~g~~~~~~L 467 (609)
..+-+++|..-| +-..+++.+
T Consensus 150 ~i~A~vVI~AdG-v~s~la~~~ 170 (428)
T PRK10157 150 VIEAKTVILADG-VNSILAEKL 170 (428)
T ss_pred EEEEEEEEEECC-CHHHHHHHH
T ss_conf 898717999447-217779872
No 336
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.065 Score=29.99 Aligned_cols=106 Identities=17% Similarity=0.183 Sum_probs=73.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHH
Q ss_conf 79973774899999999847990899719989999999769929997899989998489314679999359968999999
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYIT 530 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~ 530 (609)
|=|+|.|+.||-++..=...|+++.+.|.|++... .+-.-+.+..+.+|++.+++. ++++|.+ |.+.+..+..+.
T Consensus 4 vgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA--~~va~~~i~~~~dD~~al~el-a~~~DVi--T~EfE~V~~~aL 78 (375)
T COG0026 4 VGILGGGQLGRMMALAAARLGIKVIVLDPDADAPA--AQVADRVIVAAYDDPEALREL-AAKCDVI--TYEFENVPAEAL 78 (375)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCH--HHCCCCEEECCCCCHHHHHHH-HHHCCEE--EEEECCCCHHHH
T ss_conf 99976869999999999864977999569999963--341431541577888999999-8629889--985146988999
Q ss_pred HHH---HHHCCCCEEEEEECCHH-HHHHHHHCCCC
Q ss_conf 999---99589880899946989-99999976998
Q gi|254780924|r 531 QEA---RNSNPSILIIALADSDS-EVEHLTRYGAD 561 (609)
Q Consensus 531 ~~~---~~~~~~~~iia~~~~~~-~~~~l~~~Ga~ 561 (609)
..+ ....|....+....|+- +.+.|+++|+.
T Consensus 79 ~~l~~~~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~ 113 (375)
T COG0026 79 EKLAASVKVFPSPDALRIAQDRLVEKQFLDKAGLP 113 (375)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99996167699989988776689999999976999
No 337
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.55 E-value=0.019 Score=33.69 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=18.3
Q ss_pred CCCCEEEECCCHHHHHHHHHH-------HHCCCCEEE
Q ss_conf 478179973774899999999-------847990899
Q gi|254780924|r 447 LCDHVILVGYGRIGKVIVQNL-------KAAGIALLV 476 (609)
Q Consensus 447 ~~~~vii~G~g~~g~~~~~~L-------~~~~~~v~v 476 (609)
..++||+|- |-.++.+++.| ..+|+.+++
T Consensus 246 ~ad~vViAa-GawS~~L~~~lG~~~Pl~p~rGy~l~~ 281 (410)
T PRK12409 246 EFDGVVVCA-GVGSRQLAAMLGDRVNVYPVKGYSITV 281 (410)
T ss_pred EEEEEEECC-CCCCHHHHHHCCCCCCEEECCCEEEEE
T ss_conf 830499876-666376686538865236426758998
No 338
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.53 E-value=0.1 Score=28.66 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=48.5
Q ss_pred CEEEECCC---HHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHHC-CC-CEEECCCCCHHHHHHC------CHHHCCE
Q ss_conf 17997377---4899999999847990899719989---99999976-99-2999789998999848------9314679
Q gi|254780924|r 450 HVILVGYG---RIGKVIVQNLKAAGIALLVIEDSEK---KIEELRSL-GI-DVIYGNATITKILLMA------NIEKARS 515 (609)
Q Consensus 450 ~vii~G~g---~~g~~~~~~L~~~~~~v~vid~~~~---~~~~~~~~-g~-~~~~gd~~~~~~l~~~------~i~~a~~ 515 (609)
.++|-|.. .+|+.+++.|.++|.+|++.+.|++ .++++.++ |. .++..|.+|++-.++. ...+.|.
T Consensus 7 ~alITGaag~~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvs~~~~v~~~~~~i~~~~G~iDi 86 (274)
T PRK08415 7 KGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNDALKKRVEPIAQELGSPYVYELDVSKEEHFKSLAESIKKDLGEIDF 86 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 79998999983799999999998699999984887899999999986299769990289999999999999998589888
Q ss_pred EEE
Q ss_conf 999
Q gi|254780924|r 516 LVV 518 (609)
Q Consensus 516 vi~ 518 (609)
+|-
T Consensus 87 lVn 89 (274)
T PRK08415 87 IVH 89 (274)
T ss_pred EEE
T ss_conf 853
No 339
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=95.53 E-value=0.15 Score=27.47 Aligned_cols=102 Identities=21% Similarity=0.190 Sum_probs=68.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHCCHHHCCEEEEEC---
Q ss_conf 1799737748999999998479908997199899999997----699--2999789998999848931467999935---
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMANIEKARSLVVSI--- 520 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~~i~~a~~vi~~~--- 520 (609)
+|+=+||| |-.+++.|.+.|.+|+.||.+++.++.+++ .|. +..++|+.+. ...+-++.|.|++.-
T Consensus 51 ~ILDVGCG--gG~lse~LAr~Ga~VtGID~S~~~I~~Ar~ha~~~~l~i~y~~~~~e~l---~~~~~~~FDvV~~~EVlE 125 (233)
T PRK05134 51 RVLDVGCG--GGILSESMARLGATVTGIDASEENIEVARLHALESGLKIDYRQITAEEL---AAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred EEEEECCC--CCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHH---HHHCCCCEEEEEEEHHHH
T ss_conf 89997558--9711289996799799987998999999998564434511675147665---430578634774421477
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 996899999999999589880899946989999999
Q gi|254780924|r 521 STAFEAAYITQEARNSNPSILIIALADSDSEVEHLT 556 (609)
Q Consensus 521 ~~~~~n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~ 556 (609)
.=++....+...+|-+.|...++..+-|+.-...+.
T Consensus 126 HV~d~~~~l~~~~rlLKPGG~l~lsTiNrt~~S~l~ 161 (233)
T PRK05134 126 HVPDPASFIRACAKLVKPGGLVFFSTLNRNLKSYLL 161 (233)
T ss_pred HCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 538999999999997389914999726789899999
No 340
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.53 E-value=0.048 Score=30.92 Aligned_cols=95 Identities=15% Similarity=0.271 Sum_probs=56.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC--------CCCE-EECCCCCHHHHHHCCHHHCCEEEEEC
Q ss_conf 7997377489999999984799-089971998999999976--------9929-99789998999848931467999935
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL--------GIDV-IYGNATITKILLMANIEKARSLVVSI 520 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~--------g~~~-~~gd~~~~~~l~~~~i~~a~~vi~~~ 520 (609)
|-|+|.|++|..++-.|..++. +++++|.|+++.+....+ +.++ +.+ ..|.+ .+.++|.++.+-
T Consensus 1 V~IIGaG~VG~~~a~~l~~~~~~el~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~-~~d~~-----~~~daDvvVita 74 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG-TNDYE-----DIAGSDVVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEE-CCCHH-----HHCCCCEEEEEC
T ss_conf 989896888999999998579967999809998005798877613201589858994-78879-----947998999906
Q ss_pred CC-----------HHHHHH----HHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 99-----------689999----999999958988089994698999
Q gi|254780924|r 521 ST-----------AFEAAY----ITQEARNSNPSILIIALADSDSEV 552 (609)
Q Consensus 521 ~~-----------~~~n~~----~~~~~~~~~~~~~iia~~~~~~~~ 552 (609)
+. -+.|.. ++....+.+|+.. +..+.||-+.
T Consensus 75 G~~~k~g~tR~dLl~~N~~I~~~i~~~i~~~~p~~i-~lvvsNPvDv 120 (300)
T cd01339 75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAI-VIVVTNPLDV 120 (300)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEECCCCHHH
T ss_conf 778998998899999889999999999996599848-9982793899
No 341
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.15 Score=27.46 Aligned_cols=120 Identities=13% Similarity=0.178 Sum_probs=69.8
Q ss_pred CCEEEE-CCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHH--------CCCCEEECCCCCHHHHHHC-CHHHCCEEE
Q ss_conf 817997-377489999999984799-08997199899999997--------6992999789998999848-931467999
Q gi|254780924|r 449 DHVILV-GYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRS--------LGIDVIYGNATITKILLMA-NIEKARSLV 517 (609)
Q Consensus 449 ~~vii~-G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~--------~g~~~~~gd~~~~~~l~~~-~i~~a~~vi 517 (609)
..|+|- |.|-+|+++++++.+.+. ++++.|.||......+. .....+.||..|.+-++++ .-.+.|.+.
T Consensus 251 K~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~Vf 330 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVF 330 (588)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf 88999689873679999999854987899961763779999999986278751689963534689999998638886688
Q ss_pred EEC---------CCH----HHHH----HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHH--HHHHHHH
Q ss_conf 935---------996----8999----99999999589880899946989999999769987876589999--9999998
Q gi|254780924|r 518 VSI---------STA----FEAA----YITQEARNSNPSILIIALADSDSEVEHLTRYGADTVVMSAREIA--LGMLDRL 578 (609)
Q Consensus 518 ~~~---------~~~----~~n~----~~~~~~~~~~~~~~iia~~~~~~~~~~l~~~Ga~~vi~p~~~~a--~~~~~~l 578 (609)
=+- .|+ .+|+ ..+..+.+.+-+ +.+...+ |..++|....| ++++|.+
T Consensus 331 HAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~-~~V~iST-------------DKAV~PtNvmGaTKr~aE~~ 396 (588)
T COG1086 331 HAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVK-KFVLIST-------------DKAVNPTNVMGATKRLAEKL 396 (588)
T ss_pred EHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCC-EEEEEEC-------------CCCCCCCHHHHHHHHHHHHH
T ss_conf 755553686310188999987217389999999983977-8999705-------------86668841766889999999
Q ss_pred HHHH
Q ss_conf 7421
Q gi|254780924|r 579 NQVH 582 (609)
Q Consensus 579 ~~~~ 582 (609)
....
T Consensus 397 ~~a~ 400 (588)
T COG1086 397 FQAA 400 (588)
T ss_pred HHHH
T ss_conf 9997
No 342
>PRK06125 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.13 Score=27.96 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=51.9
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----C--CCEEECCCCCHHHHHHC--CHHHCCEEEEEC
Q ss_conf 799737-7489999999984799089971998999999976-----9--92999789998999848--931467999935
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----G--IDVIYGNATITKILLMA--NIEKARSLVVSI 520 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g--~~~~~gd~~~~~~l~~~--~i~~a~~vi~~~ 520 (609)
++|.|. .-+|+.+++.|.++|.+|++.|.|++..++..++ + ..++..|.++++..++. ...+.|.+|-.-
T Consensus 10 alITG~s~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~iDiLVnnA 89 (259)
T PRK06125 10 VLITGASKGIGAAAAEAFAAEGCHLVLAARDADALAALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDILVNNA 89 (259)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 99968776899999999998799899997988999999999987009866999888999999999999858998999768
No 343
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.49 E-value=0.15 Score=27.53 Aligned_cols=17 Identities=6% Similarity=-0.060 Sum_probs=8.9
Q ss_pred CEEEEEECCHHHHHHHH
Q ss_conf 80899946989999999
Q gi|254780924|r 540 ILIIALADSDSEVEHLT 556 (609)
Q Consensus 540 ~~iia~~~~~~~~~~l~ 556 (609)
.+++++++.-...+..+
T Consensus 427 g~iiC~CE~VTe~EI~~ 443 (545)
T PRK11101 427 RSLVCECEAVTAGEVQY 443 (545)
T ss_pred CCEECCCCCCCHHHHHH
T ss_conf 97221787606999999
No 344
>PRK06181 short chain dehydrogenase; Provisional
Probab=95.49 E-value=0.068 Score=29.87 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=49.4
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 799737-748999999998479908997199899999997----6992--999789998999848------931467999
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|-|. .-+|+.+|+.|.++|.++++.|.|++..+++.+ .|.+ .+..|.+|++-.+++ ...+.|.+|
T Consensus 4 ~lITGassGIG~a~A~~la~~Ga~vvl~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~G~iDiLV 83 (263)
T PRK06181 4 VIITGASEGIGRALAVRLARAGARLVLAARNEERLASLAQELANYGAEALVVATDVSDAEACERLIEAAVAHFGGIDILV 83 (263)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99958101999999999998799899998899999999999995499679998079999999999999999829964899
Q ss_pred E
Q ss_conf 9
Q gi|254780924|r 518 V 518 (609)
Q Consensus 518 ~ 518 (609)
.
T Consensus 84 N 84 (263)
T PRK06181 84 N 84 (263)
T ss_pred E
T ss_conf 8
No 345
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.48 E-value=0.073 Score=29.68 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=4.3
Q ss_pred HHCCEEEEECCCH
Q ss_conf 1467999935996
Q gi|254780924|r 511 EKARSLVVSISTA 523 (609)
Q Consensus 511 ~~a~~vi~~~~~~ 523 (609)
++.+..+++.+++
T Consensus 371 ~~~~~~vi~~G~~ 383 (468)
T PRK04690 371 QQAPLEIVTMGAN 383 (468)
T ss_pred HCCCEEEEEECCC
T ss_conf 3376899997478
No 346
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.48 E-value=0.055 Score=30.49 Aligned_cols=95 Identities=15% Similarity=0.290 Sum_probs=58.6
Q ss_pred EEEECC-CHHHHHHHHHHHHCC----CCEEEECCCHHHHHHHHHC--CC-------CEEECCCCCHHHHHHCCHHHCCEE
Q ss_conf 799737-748999999998479----9089971998999999976--99-------299978999899984893146799
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAG----IALLVIEDSEKKIEELRSL--GI-------DVIYGNATITKILLMANIEKARSL 516 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~----~~v~vid~~~~~~~~~~~~--g~-------~~~~gd~~~~~~l~~~~i~~a~~v 516 (609)
|.|+|. |++|+.++-.|..++ .+++++|.|+++.+....+ +. ++..++.. . ..+.++|.+
T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~v~~~~~~-~-----~~~~daDvV 74 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDP-Y-----EAFKDADVV 74 (263)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-H-----HHHCCCCEE
T ss_conf 9898779779999999998289999988999958987208799999854523578739974873-8-----983799899
Q ss_pred EEECCC---------H--HHHH----HHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 993599---------6--8999----9999999958988089994698999
Q gi|254780924|r 517 VVSIST---------A--FEAA----YITQEARNSNPSILIIALADSDSEV 552 (609)
Q Consensus 517 i~~~~~---------~--~~n~----~~~~~~~~~~~~~~iia~~~~~~~~ 552 (609)
+.+-+. | ..|. .+....++++|+..++ .+.|+-+.
T Consensus 75 Vitag~~~k~g~~R~dll~~N~~I~~~i~~~i~~~~p~a~ii-vvtNPvdv 124 (263)
T cd00650 75 IITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWII-VVSNPVDI 124 (263)
T ss_pred EEECCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCEEE-ECCCCHHH
T ss_conf 990577889998765664032889999988887329983699-73894899
No 347
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.46 E-value=0.031 Score=32.23 Aligned_cols=118 Identities=12% Similarity=0.085 Sum_probs=69.9
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCC-CCEEECCCCCHHHHHHCCH-HHCCEEEEEC-----C-
Q ss_conf 7997-3774899999999847990899719989999999769-9299978999899984893-1467999935-----9-
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLG-IDVIYGNATITKILLMANI-EKARSLVVSI-----S- 521 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g-~~~~~gd~~~~~~l~~~~i-~~a~~vi~~~-----~- 521 (609)
|++. |.|-+|+..+.+|.+.|++++++|....--+..-..- .+.+.||..|.+.|++.=- ++.++|+=-- +
T Consensus 3 iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~VgE 82 (329)
T COG1087 3 VLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASISVGE 82 (329)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 99965865468999999997898489995688788888602048568833431999999998649988998730043234
Q ss_pred -----------CHHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHHHHHCCCCEEECHHHH
Q ss_conf -----------9689999999999958988089994----69899999997699878765899
Q gi|254780924|r 522 -----------TAFEAAYITQEARNSNPSILIIALA----DSDSEVEHLTRYGADTVVMSARE 569 (609)
Q Consensus 522 -----------~~~~n~~~~~~~~~~~~~~~iia~~----~~~~~~~~l~~~Ga~~vi~p~~~ 569 (609)
|-...+.+....++.+.+.-+.+-+ .+++....-++.-. ..++|+-.
T Consensus 83 Sv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~Pi~E~~~~-~p~NPYG~ 144 (329)
T COG1087 83 SVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPL-APINPYGR 144 (329)
T ss_pred HHHCHHHHHHHCHHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCCCCCCC-CCCCCCHH
T ss_conf 441878888603086999999999829976999243010389987664788888-99885315
No 348
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=95.46 E-value=0.059 Score=30.28 Aligned_cols=128 Identities=15% Similarity=0.182 Sum_probs=87.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHH
Q ss_conf 79973774899999999847990899719989999999769929997899989998489314679999359968999999
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYIT 530 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~ 530 (609)
|=|+|+|+.|+=++.+=.+-|+++.|+|.|++--...-.++-+.+.+..+|++-+++. .+.+| |+|.+.+..+....
T Consensus 2 vGilGGGQLG~M~~~aA~~LG~~~~VL~~~~~~PA~q~Ad~~~~v~a~~~d~~~i~~L-a~~cD--viT~E~Ehv~~~~L 78 (386)
T TIGR01161 2 VGILGGGQLGRMLALAAKKLGIKVAVLDPDANSPAKQVADSREHVLASFTDPEAIREL-AEACD--VITFEFEHVDVEAL 78 (386)
T ss_pred EEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHH-HHHCC--EEEEEECCCCCHHH
T ss_conf 6897188489999998712795899854898973111289855799851487899999-97656--55431013785678
Q ss_pred HHHHHHCCCCEEE------EEECC-HHHHHHHHHCCCC---EEE--CHHHHHHHHHHHHHHHH
Q ss_conf 9999958988089------99469-8999999976998---787--65899999999998742
Q gi|254780924|r 531 QEARNSNPSILII------ALADS-DSEVEHLTRYGAD---TVV--MSAREIALGMLDRLNQV 581 (609)
Q Consensus 531 ~~~~~~~~~~~ii------a~~~~-~~~~~~l~~~Ga~---~vi--~p~~~~a~~~~~~l~~~ 581 (609)
......+++.++. ....| -.+.+.|+++|+. +.. .+....-+...+.+..+
T Consensus 79 ~~L~~~g~~~~~~P~~~~l~~~~dk~~qK~~L~~~g~~vp~f~~~~~~~~~~~~~~~~~~g~p 141 (386)
T TIGR01161 79 EKLEARGDKVKVRPSPEALAIIQDKLTQKQFLQKLGLPVPPFVVIEIKDEEELDSALQELGFP 141 (386)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHCCCC
T ss_conf 999835984776038899998836589999999668998841202236842578999873984
No 349
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.45 E-value=0.12 Score=28.28 Aligned_cols=88 Identities=19% Similarity=0.332 Sum_probs=54.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECC--CHHHH
Q ss_conf 8179973774899999999847990899719989999999769929997899989998489314679999359--96899
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIS--TAFEA 526 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~--~~~~n 526 (609)
..+-|+|+|++|+.+++.++..|.+|...|...+. +...+.|.+.. .+++. ++++|.+.+..+ ++..+
T Consensus 151 ktlGIiG~G~IG~~vak~~~~fgm~V~~~d~~~~~-~~~~~~~~~~~--------~l~el-l~~sDiIslh~Plt~eT~~ 220 (333)
T PRK13243 151 KTIGIVGFGRIGQAIARRAKGFGMRILYYSRTRKP-EVEKELGAEYR--------PLEDL-LRESDFVVLAVPLTKETYH 220 (333)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCH-HHHHHCCCEEE--------CHHHH-HHHCCEEEECCCCCCCCCC
T ss_conf 89999792566899999999769999998998986-67876096881--------19997-4216526642558601346
Q ss_pred HHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999958988089994
Q gi|254780924|r 527 AYITQEARNSNPSILIIALA 546 (609)
Q Consensus 527 ~~~~~~~~~~~~~~~iia~~ 546 (609)
+.-....+..-++..+|-.+
T Consensus 221 li~~~~~~~MK~~a~lIN~a 240 (333)
T PRK13243 221 MINEERLKLMKKTAILVNIA 240 (333)
T ss_pred CCCHHHHHHCCCCEEEEECC
T ss_conf 13699997179981999858
No 350
>KOG0409 consensus
Probab=95.42 E-value=0.16 Score=27.22 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=42.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCE
Q ss_conf 78179973774899999999847990899719989999999769929
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDV 494 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~ 494 (609)
..+|=.+|.|-.|...+..|.+.|++|+|-|.+.+.|+++.+.|.++
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v 81 (327)
T KOG0409 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARV 81 (327)
T ss_pred CCEEEEEEECCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCHHH
T ss_conf 55135774341118999999975987999958678878999705014
No 351
>PRK13984 putative oxidoreductase; Provisional
Probab=95.38 E-value=0.12 Score=28.20 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=18.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCH
Q ss_conf 817997377489999999984799089971998
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSE 481 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~ 481 (609)
.+|-|+|.|+.|...|..|.+.|++|+|.|.++
T Consensus 284 KKVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~ 316 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVEVYESLS 316 (604)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 989998986899999999998698689974567
No 352
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.37 E-value=0.17 Score=27.11 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=61.4
Q ss_pred CCCEEEECCCHHHHHHHHH-HHHCCCCEEEECCCHHHHHHHHHCC-----CCEEECCCCCHHH---HH-------HCCHH
Q ss_conf 7817997377489999999-9847990899719989999999769-----9299978999899---98-------48931
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQN-LKAAGIALLVIEDSEKKIEELRSLG-----IDVIYGNATITKI---LL-------MANIE 511 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~-L~~~~~~v~vid~~~~~~~~~~~~g-----~~~~~gd~~~~~~---l~-------~~~i~ 511 (609)
-++|-|+|.|.+|..+|.. ..+.|++|++.|.|++.+++..+.- -.+-.|-.++.+. +. -..+.
T Consensus 309 i~kv~ViGaG~MG~gIA~~~a~~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~~~~~ 388 (706)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDYRGFK 388 (706)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCHHHHC
T ss_conf 76799986473238999999998698799997999999999998899999998618999899999862241004412315
Q ss_pred HCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 467999935996-8999999999995898808999
Q gi|254780924|r 512 KARSLVVSISTA-FEAAYITQEARNSNPSILIIAL 545 (609)
Q Consensus 512 ~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~ 545 (609)
++|.+|=+..+| +....+-....+..+.-.|++.
T Consensus 389 ~~DlVIEAv~E~~~~K~~v~~~le~~~~~~aIlAt 423 (706)
T PRK11154 389 HADLVIEAVFEDLALKQQMVADVEQNCAEHTIFAS 423 (706)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 68879997145288899999999964798858950
No 353
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.37 E-value=0.14 Score=27.82 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=54.8
Q ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----C--CCEEECCCCCHHHHHHCCHH------HC
Q ss_conf 781799737-7489999999984799089971998999999976-----9--92999789998999848931------46
Q gi|254780924|r 448 CDHVILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----G--IDVIYGNATITKILLMANIE------KA 513 (609)
Q Consensus 448 ~~~vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g--~~~~~gd~~~~~~l~~~~i~------~a 513 (609)
..+++|-|. +.+|+.+++.|.++|++++++..++++.+++.++ + .+++.-|-+|++..++..-+ +.
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~I 85 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPI 85 (265)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 86799977886489999999997799799996769999999999987308627999776788367999999998248852
Q ss_pred CEEEEE
Q ss_conf 799993
Q gi|254780924|r 514 RSLVVS 519 (609)
Q Consensus 514 ~~vi~~ 519 (609)
|.+|-+
T Consensus 86 dvLVNN 91 (265)
T COG0300 86 DVLVNN 91 (265)
T ss_pred CEEEEC
T ss_conf 389977
No 354
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=95.37 E-value=0.04 Score=31.43 Aligned_cols=48 Identities=31% Similarity=0.529 Sum_probs=37.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHH------------HHHHHCCCCEEEC
Q ss_conf 17997377489999999984799089971998999------------9999769929997
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKI------------EELRSLGIDVIYG 497 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~------------~~~~~~g~~~~~g 497 (609)
+++|+|.|.+|-.+|..|.+.|.++.++|..+... +.++++|++++.+
T Consensus 1 rv~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~~l~~~d~~~~~~~~~~l~~~GV~i~~~ 60 (82)
T pfam00070 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60 (82)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 999999889999999999863927899812573302279889999999998669999749
No 355
>PRK12742 oxidoreductase; Provisional
Probab=95.36 E-value=0.13 Score=27.89 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=52.2
Q ss_pred CEEEECCCH-HHHHHHHHHHHCCCCEEEE-CCCHHHHHHHHHC-CCCEEECCCCCHHHHHHC--CHHHCCEEEEEC
Q ss_conf 179973774-8999999998479908997-1998999999976-992999789998999848--931467999935
Q gi|254780924|r 450 HVILVGYGR-IGKVIVQNLKAAGIALLVI-EDSEKKIEELRSL-GIDVIYGNATITKILLMA--NIEKARSLVVSI 520 (609)
Q Consensus 450 ~vii~G~g~-~g~~~~~~L~~~~~~v~vi-d~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~--~i~~a~~vi~~~ 520 (609)
+++|-|..+ +|+.+++.|.++|.+|++. ..+++..+++.++ +...+..|.+|.+...+. ...+.|.+|...
T Consensus 8 ~alITGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~iD~lVnnA 83 (237)
T PRK12742 8 SVLVLGGSRGIGAAIVRRFVTDGANVVFTYAGSKDAAERLAAETGATAVFTDSADRDAVIDVVRKSGPLDILVVNA 83 (237)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 8999278879999999999987999999779998999999886398289935458999999999869998999899
No 356
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.36 E-value=0.052 Score=30.68 Aligned_cols=93 Identities=15% Similarity=0.242 Sum_probs=63.8
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCH--------------H-------HHHHHHH----C----CC
Q ss_conf 321347817997377489999999984799-089971998--------------9-------9999997----6----99
Q gi|254780924|r 443 QKTDLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSE--------------K-------KIEELRS----L----GI 492 (609)
Q Consensus 443 ~~~~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~--------------~-------~~~~~~~----~----g~ 492 (609)
+..=.+.||+|+|.|-.|..++..|...|. ++.++|.|. + +++.+++ - .+
T Consensus 19 Q~kL~~a~VlVvGaGGLGs~~a~~La~aGVG~i~ivD~D~Ve~SNL~RQ~L~~e~Dig~~~pKa~aA~~~L~~iNp~v~I 98 (339)
T PRK07688 19 QQKIREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSEVRV 98 (339)
T ss_pred HHHHHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 99986297899877777799999999848982999809992466788650656213322637799999999834998605
Q ss_pred CEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 299978999899984893146799993599689999999999958
Q gi|254780924|r 493 DVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSN 537 (609)
Q Consensus 493 ~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~ 537 (609)
+.+..+.+. +.+++ -++++|.++=++||.++-..+-..+.+.+
T Consensus 99 ~~~~~~l~~-~n~~~-li~~~DlViD~tDNf~tR~liNd~c~~~~ 141 (339)
T PRK07688 99 EAIVQDVTA-EELEE-LVTNVDVIIDATDNFETRFIVNDAAQKYS 141 (339)
T ss_pred EEEECCCCH-HHHHH-HHHCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 876003998-99999-98518899987889999999999999959
No 357
>pfam01073 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family. The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones.
Probab=95.36 E-value=0.065 Score=30.02 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHCCC--CEEEECCC--HHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEEC--------C
Q ss_conf 377489999999984799--08997199--8999999976-992999789998999848931467999935--------9
Q gi|254780924|r 455 GYGRIGKVIVQNLKAAGI--ALLVIEDS--EKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSI--------S 521 (609)
Q Consensus 455 G~g~~g~~~~~~L~~~~~--~v~vid~~--~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~--------~ 521 (609)
|.|=+|+++++.|.++|+ +|.++|.+ ++..+..... ..+.+.||.+|++.++++- +++|.|+=+- .
T Consensus 5 g~GFIGs~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~~~~~~~~~~v~gDl~d~~~l~~~~-~~~D~V~H~Aa~~~~~~~~ 83 (280)
T pfam01073 5 GGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQVITYIEGDVTDKQDLRRAL-QGSDVVIHTAAIIDVFGKA 83 (280)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHH-HCCCEEEEECCCCCCCCCC
T ss_conf 675999999999997799757999878898678887322588759991289999999998-4799899721223555667
Q ss_pred CH----HHHH----HHHHHHHHHCCC
Q ss_conf 96----8999----999999995898
Q gi|254780924|r 522 TA----FEAA----YITQEARNSNPS 539 (609)
Q Consensus 522 ~~----~~n~----~~~~~~~~~~~~ 539 (609)
++ +.|. .+...+++.+.+
T Consensus 84 ~~~~~~~~Nv~gt~~ll~aa~~~gvk 109 (280)
T pfam01073 84 YRDTIMKVNVKGTQNVLDACVKAGVR 109 (280)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999964777
No 358
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=95.36 E-value=0.038 Score=31.64 Aligned_cols=57 Identities=25% Similarity=0.335 Sum_probs=46.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHH
Q ss_conf 8179973774899999999847990899719989999999769929997899989998489314
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEK 512 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~ 512 (609)
-+|+|+|.|+.|...|..|.+.|.+|+++|..+ +-|.+..+|+..++..+++...+-
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~-------~~G~k~~~~~~~~~~~l~~l~~~~ 60 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGS-------EPGAKPCCGGGLSPRALEELIPDF 60 (396)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-------CCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 889998978899999999985799299996578-------899987676667877887745552
No 359
>PRK07236 hypothetical protein; Provisional
Probab=95.36 E-value=0.023 Score=33.09 Aligned_cols=24 Identities=4% Similarity=-0.002 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999874210026787877888
Q gi|254780924|r 572 LGMLDRLNQVHHEKVTCDRSNKDE 595 (609)
Q Consensus 572 ~~~~~~l~~~~~~~~~~~~~~~~e 595 (609)
.+-.+..+++...++.....+..+
T Consensus 350 l~~Ye~~R~pr~~~v~~~sr~~g~ 373 (386)
T PRK07236 350 LAAWEAERLAVGAAIVARGRDLGA 373 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 360
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.35 E-value=0.031 Score=32.19 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=53.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHH---------H----HHHHHHCCCCEEECCCCCHH--------HHH
Q ss_conf 78179973774899999999847990899719989---------9----99999769929997899989--------998
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEK---------K----IEELRSLGIDVIYGNATITK--------ILL 506 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~---------~----~~~~~~~g~~~~~gd~~~~~--------~l~ 506 (609)
..|++|+|.|-+|-++|..|.+.|.+|.++|..+. . .+.++++|++++.+...+.. +++
T Consensus 144 ~k~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~~l~r~~~~~~~~~l~~~~~~~GV~~~~~~~v~~~~~g~~~~v~l~ 223 (400)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQ 223 (400)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCCEEEEEEC
T ss_conf 87399988558999999999975994899953463410026989999999999978989995875899978977999986
Q ss_pred HCCHHHCCEEEEECCC
Q ss_conf 4893146799993599
Q gi|254780924|r 507 MANIEKARSLVVSIST 522 (609)
Q Consensus 507 ~~~i~~a~~vi~~~~~ 522 (609)
.-..-++|.+++.++-
T Consensus 224 ~G~~l~aD~VivaiGv 239 (400)
T PRK09754 224 SGETLQADVVIYGIGI 239 (400)
T ss_pred CCCEEECCEEEECCCC
T ss_conf 8999985899989767
No 361
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=95.34 E-value=0.11 Score=28.50 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=48.2
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEE-CCCHHHHHHHH----HCCCC--EEECCCCCHHHHHHC------CHHHCCEE
Q ss_conf 799737-748999999998479908997-19989999999----76992--999789998999848------93146799
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVI-EDSEKKIEELR----SLGID--VIYGNATITKILLMA------NIEKARSL 516 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vi-d~~~~~~~~~~----~~g~~--~~~gd~~~~~~l~~~------~i~~a~~v 516 (609)
++|-|. +.+|+.+++.|.++|.+|++- +.+++..++.. ++|.+ .+.+|.+|++-.+++ ...+.|.+
T Consensus 9 alVTG~s~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~~~~~v~~~~~~~G~iDiL 88 (247)
T PRK12935 9 AIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGKVDIL 88 (247)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99917276899999999998799899976999899999999998439958999857999999999999999983999899
Q ss_pred EEEC
Q ss_conf 9935
Q gi|254780924|r 517 VVSI 520 (609)
Q Consensus 517 i~~~ 520 (609)
|-.-
T Consensus 89 VNNA 92 (247)
T PRK12935 89 VNNA 92 (247)
T ss_pred EECC
T ss_conf 9899
No 362
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.34 E-value=0.085 Score=29.20 Aligned_cols=70 Identities=30% Similarity=0.359 Sum_probs=48.7
Q ss_pred EEEECCCH-HHHHHHHHHHHCCCCEEEECCC-HHHHHHHH----HCCC--CEEECCCCCHHHHHHC------CHHHCCEE
Q ss_conf 79973774-8999999998479908997199-89999999----7699--2999789998999848------93146799
Q gi|254780924|r 451 VILVGYGR-IGKVIVQNLKAAGIALLVIEDS-EKKIEELR----SLGI--DVIYGNATITKILLMA------NIEKARSL 516 (609)
Q Consensus 451 vii~G~g~-~g~~~~~~L~~~~~~v~vid~~-~~~~~~~~----~~g~--~~~~gd~~~~~~l~~~------~i~~a~~v 516 (609)
++|-|.++ +|+.+++.|.++|.+|++.+.+ ++..+.+. +.+. ..+..|.++++-.++. ...+.|.+
T Consensus 10 ~lITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iDil 89 (250)
T PRK12825 10 ALVTGAARGIGRAIALRLAAAGADVIVHPPSDEAAAEETVAAVEALGRRAQAVQADVTDAAALEAAVEELVERFGAIDIL 89 (250)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99938955899999999998799899997988789999999998539948999941899999999999999976999899
Q ss_pred EEEC
Q ss_conf 9935
Q gi|254780924|r 517 VVSI 520 (609)
Q Consensus 517 i~~~ 520 (609)
|.+-
T Consensus 90 InnA 93 (250)
T PRK12825 90 VNNA 93 (250)
T ss_pred EECC
T ss_conf 9899
No 363
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.33 E-value=0.18 Score=27.03 Aligned_cols=90 Identities=22% Similarity=0.272 Sum_probs=59.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEECCCHHHH-----------------------HHHHHC--CCC--EEE
Q ss_conf 13478179973774899999999847990-89971998999-----------------------999976--992--999
Q gi|254780924|r 445 TDLCDHVILVGYGRIGKVIVQNLKAAGIA-LLVIEDSEKKI-----------------------EELRSL--GID--VIY 496 (609)
Q Consensus 445 ~~~~~~vii~G~g~~g~~~~~~L~~~~~~-v~vid~~~~~~-----------------------~~~~~~--g~~--~~~ 496 (609)
+=.+.||.|+|.|-.|..+++.|...|.. +.++|.|.-.. +++++. ..+ .+.
T Consensus 18 kL~~s~VlvvG~GGLG~~v~~~La~aGvg~i~ivD~d~v~~snL~RQ~l~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~ 97 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99609599988788999999999983798699998991877773978603233478885999999999738997289870
Q ss_pred CCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 78999899984893146799993599689999999999958
Q gi|254780924|r 497 GNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSN 537 (609)
Q Consensus 497 gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~ 537 (609)
.+. +++.- .-+++.|.++.+++|.++-..+-..+++.+
T Consensus 98 ~~~-~~~~~--~~i~~~D~Vvd~~dn~~~r~~iN~~c~~~~ 135 (197)
T cd01492 98 DDI-SEKPE--EFFSQFDVVVATELSRAELVKINELCRKLG 135 (197)
T ss_pred CCC-CHHHH--HHHHCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 458-57689--998289999999999999999999999819
No 364
>PRK10015 hypothetical protein; Provisional
Probab=95.33 E-value=0.041 Score=31.42 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=6.8
Q ss_pred CCEEEECCCHHHHHHHHHH
Q ss_conf 8179973774899999999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNL 467 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L 467 (609)
.+++|..-| +-..+++++
T Consensus 153 A~vVI~AdG-vns~la~~l 170 (429)
T PRK10015 153 ANVVILADG-VNSMLGRSL 170 (429)
T ss_pred EEEEEEECC-CCHHHHHHH
T ss_conf 658998156-227999981
No 365
>PRK13856 two-component response regulator VirG; Provisional
Probab=95.32 E-value=0.18 Score=27.00 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=64.9
Q ss_pred CCEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 90899719989999999----7699299978999899984893146799993599-689999999999958988089994
Q gi|254780924|r 472 IALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 472 ~~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~~~~~iia~~ 546 (609)
.++.+||+|++..+.+. .+|+++.... +-.+.++...-++.|.+|+-.+= +.....+|+..|+..+. +++.-+
T Consensus 2 ~~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~-~~~~~~~~l~~~~~DlvIlDi~lp~~~Gl~~~~~ir~~~~~-piiilt 79 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVA-DSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATKSDV-PIIIIS 79 (241)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCCCC-CEEEEE
T ss_conf 9899996989999999999987799999989-99999999865999999996999876613455564036997-369997
Q ss_pred C---CHHHHHHHHHCCCCEEECHHHHHHH
Q ss_conf 6---9899999997699878765899999
Q gi|254780924|r 547 D---SDSEVEHLTRYGADTVVMSAREIAL 572 (609)
Q Consensus 547 ~---~~~~~~~l~~~Ga~~vi~p~~~~a~ 572 (609)
. +..+.-.-.++|||.-+...+...+
T Consensus 80 ~~~~~~~d~i~~l~~GADDYl~KPf~~~E 108 (241)
T PRK13856 80 GDRLEEADKVVALELGATDFIAKPFGTRE 108 (241)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 26787899999987699889977767779
No 366
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.32 E-value=0.13 Score=27.86 Aligned_cols=73 Identities=25% Similarity=0.327 Sum_probs=54.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCH---------------------HHHHHHHHCCCCEEECC--CCCH
Q ss_conf 347817997377489999999984799089971998---------------------99999997699299978--9998
Q gi|254780924|r 446 DLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSE---------------------KKIEELRSLGIDVIYGN--ATIT 502 (609)
Q Consensus 446 ~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~---------------------~~~~~~~~~g~~~~~gd--~~~~ 502 (609)
....+|-|+|.|+.|-..|..|.+.|++|+|.|.++ ..++.+.+.|++..+|= ..+.
T Consensus 535 ~~gkKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRLPkevI~reI~~i~~~GV~f~tnvg~ditl 614 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPDLTV 614 (1012)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCH
T ss_conf 89988999897789999999999779956998158978854785588777899999999999996896999799888889
Q ss_pred HHHHHCCHHHCCEEEEECC
Q ss_conf 9998489314679999359
Q gi|254780924|r 503 KILLMANIEKARSLVVSIS 521 (609)
Q Consensus 503 ~~l~~~~i~~a~~vi~~~~ 521 (609)
+-|++ +.-|+|+++++
T Consensus 615 eeL~~---egYDAVfLa~G 630 (1012)
T TIGR03315 615 AELKN---QGYKYVILAIG 630 (1012)
T ss_pred HHHHH---CCCCEEEEECC
T ss_conf 99965---89999999568
No 367
>KOG1201 consensus
Probab=95.31 E-value=0.18 Score=26.99 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=40.6
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHH----HHHHHCC-CCEEECCCCCHHHHH
Q ss_conf 799737-7489999999984799089971998999----9999769-929997899989998
Q gi|254780924|r 451 VILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKI----EELRSLG-IDVIYGNATITKILL 506 (609)
Q Consensus 451 vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~----~~~~~~g-~~~~~gd~~~~~~l~ 506 (609)
++|=|. +-.||.+|.++.++|-.+++.|-|++-+ +..++.| .+.+..|.+|.+-..
T Consensus 41 vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~ 102 (300)
T KOG1201 41 VLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIY 102 (300)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHH
T ss_conf 99968986078999999997078489995565123999999984485258995589889999
No 368
>PRK06753 hypothetical protein; Provisional
Probab=95.31 E-value=0.022 Score=33.26 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=4.4
Q ss_pred EECCCHHHHHHHH
Q ss_conf 9737748999999
Q gi|254780924|r 453 LVGYGRIGKVIVQ 465 (609)
Q Consensus 453 i~G~g~~g~~~~~ 465 (609)
++|+.-..+.+-+
T Consensus 144 vVGADG~~S~vR~ 156 (373)
T PRK06753 144 CIGADGIHSVVRQ 156 (373)
T ss_pred EEECCCCCCHHHH
T ss_conf 9974887767888
No 369
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=95.31 E-value=0.18 Score=26.97 Aligned_cols=89 Identities=16% Similarity=0.268 Sum_probs=52.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC---CCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHH
Q ss_conf 78179973774899999999847---990899719989999999769929997899989998489314679999359968
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAA---GIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAF 524 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~---~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~ 524 (609)
.++++|+|.|+.|+.+++.++++ |++++.+-+|+.. ...+.+ +.||. .+..+.+.-++.|.++++.+..+
T Consensus 144 ~r~v~IvG~~~~~~~l~~~i~~~p~~G~~vvG~~dd~~~----~~~~~~-~lG~~--~~l~~~~~~~~id~V~ialp~~~ 216 (464)
T PRK10124 144 TRMVAVAGDLPAGQMLLESFRNQPWLGFEVVGVYHDPKP----GGVSND-WAGNL--QQLVEDAKAGKIHNVYIAMSMCD 216 (464)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC----CCCCCC-CCCCH--HHHHHHHHHCCCCEEEEECCCCH
T ss_conf 438999838889999999997296679669999668876----667899-87899--99999998689998999668236
Q ss_pred --HHHHHHHHHHHHCCCCEEE
Q ss_conf --9999999999958988089
Q gi|254780924|r 525 --EAAYITQEARNSNPSILII 543 (609)
Q Consensus 525 --~n~~~~~~~~~~~~~~~ii 543 (609)
....+....++..-+.+++
T Consensus 217 ~~~i~~lv~~l~~~~v~v~~v 237 (464)
T PRK10124 217 GARVKKLVHQLADTTCSVLLI 237 (464)
T ss_pred HHHHHHHHHHHHHCCCEEEEE
T ss_conf 889999999996189559994
No 370
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.31 E-value=0.15 Score=27.44 Aligned_cols=88 Identities=18% Similarity=0.362 Sum_probs=55.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH--HHH
Q ss_conf 817997377489999999984799089971998999999976992999789998999848931467999935996--899
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA--FEA 526 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~--~~n 526 (609)
..+=|+|+||+|+.+++.++..|-++..-|..+. .+..+. ..+-|-+ -.+.+ +++|.+.+..+-. ..+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~-~~~~y~~--l~ell-----~~sDii~l~~Plt~~T~h 216 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKE-LGARYVD--LDELL-----AESDIISLHCPLTPETRH 216 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC--HHHHHH-CCCEECC--HHHHH-----HHCCEEEEECCCCHHHHH
T ss_conf 8889978488999999987217968998668874--555740-5860416--89999-----769999997799837665
Q ss_pred HHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999958988089994
Q gi|254780924|r 527 AYITQEARNSNPSILIIALA 546 (609)
Q Consensus 527 ~~~~~~~~~~~~~~~iia~~ 546 (609)
+.-....++..+...+|-.+
T Consensus 217 Lin~~~l~~mk~ga~lVNta 236 (324)
T COG1052 217 LINAEELAKMKPGAILVNTA 236 (324)
T ss_pred HCCHHHHHHCCCCEEEEECC
T ss_conf 32999997568976999648
No 371
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.30 E-value=0.18 Score=26.96 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=45.7
Q ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHH
Q ss_conf 179973-7748999999998479908997199899999997----6992--99978999899984
Q gi|254780924|r 450 HVILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLM 507 (609)
Q Consensus 450 ~vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~ 507 (609)
.++|-| .+-+|+.+++.+.++|.++++++.|++..++..+ .|.+ .+..|.+|++-.++
T Consensus 8 vvlITGASsGIG~aiA~~~A~~Ga~Vvl~~R~~~~L~~~a~e~~~~G~~~~~v~~DVsd~~~v~~ 72 (324)
T PRK06139 8 VVVITGASSGIGRATAEAFARRGARLVLAARDEEALFEVAEECRALGAEVLVVPTDVTHADQVQA 72 (324)
T ss_pred EEEEECHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 79993825499999999999879989999899999999999999549948999766788578999
No 372
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.29 E-value=0.11 Score=28.43 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=42.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHH---------------------HHHHHHHCCCCEEECC----CCCHH
Q ss_conf 8179973774899999999847990899719989---------------------9999997699299978----99989
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEK---------------------KIEELRSLGIDVIYGN----ATITK 503 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~---------------------~~~~~~~~g~~~~~gd----~~~~~ 503 (609)
.+|-|+|.|+.|...|..|.+.|++|+|.|.+++ .++.+++.|++..++- -.+.+
T Consensus 311 kKVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV~f~~n~~VGkDit~~ 390 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFS 390 (639)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCCCCHH
T ss_conf 98999897589999999999759906999368888986853587452777899999999986498899196779868899
Q ss_pred HHHHCCHHHCCEEEEECC
Q ss_conf 998489314679999359
Q gi|254780924|r 504 ILLMANIEKARSLVVSIS 521 (609)
Q Consensus 504 ~l~~~~i~~a~~vi~~~~ 521 (609)
-|++ +-|+|++.++
T Consensus 391 eL~~----~yDAVflg~G 404 (639)
T PRK12809 391 DLTS----EYDAVFIGVG 404 (639)
T ss_pred HHHH----HCCEEEEEEC
T ss_conf 9973----1798999736
No 373
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.27 E-value=0.1 Score=28.66 Aligned_cols=71 Identities=11% Similarity=0.182 Sum_probs=51.0
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----C--CCEEECCCCCHHHHHHC---CHHHCCEEEE
Q ss_conf 1799737-7489999999984799089971998999999976-----9--92999789998999848---9314679999
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----G--IDVIYGNATITKILLMA---NIEKARSLVV 518 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g--~~~~~gd~~~~~~l~~~---~i~~a~~vi~ 518 (609)
+|+|.|. +-+|+.+|++|.++|+++.+++.|+++.++..++ + ..++..|.+|.+..++. -.++.|.++.
T Consensus 3 ~vlITGassGIG~a~A~~la~~G~~v~l~~R~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~v~ 82 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDTERLERIAADLEARGAVAVATHELDILDTARHAAFLDNLPALPDTVLI 82 (243)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEE
T ss_conf 79991574599999999999879989999898899999999998535862899843403699999999998753797999
Q ss_pred EC
Q ss_conf 35
Q gi|254780924|r 519 SI 520 (609)
Q Consensus 519 ~~ 520 (609)
+.
T Consensus 83 ~a 84 (243)
T PRK07102 83 AV 84 (243)
T ss_pred EE
T ss_conf 73
No 374
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such..
Probab=95.27 E-value=0.061 Score=30.21 Aligned_cols=105 Identities=16% Similarity=0.234 Sum_probs=78.7
Q ss_pred CCCCCCEEEEC-CCHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHCCCCEEECCCCC-HHHHHHCCHHHCCEEEEECC
Q ss_conf 13478179973-774899999999847-9908997199899999997699299978999-89998489314679999359
Q gi|254780924|r 445 TDLCDHVILVG-YGRIGKVIVQNLKAA-GIALLVIEDSEKKIEELRSLGIDVIYGNATI-TKILLMANIEKARSLVVSIS 521 (609)
Q Consensus 445 ~~~~~~vii~G-~g~~g~~~~~~L~~~-~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~-~~~l~~~~i~~a~~vi~~~~ 521 (609)
....+.++|+| .|-+|+-+.+.+++. +..|..-=+.||.-+-.++.|-+.+.-.... .+-+++.+++..++|+++|.
T Consensus 148 ~~~~~~lLIiGgAGGVGSI~iQLAR~LT~ltVIaTASRpEs~~Wv~~LGAH~VIDHskPL~~ql~~L~l~~v~~V~SlT~ 227 (338)
T TIGR02817 148 AGAKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTH 227 (338)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCCEEECCCH
T ss_conf 88887478973885178999999998549649997285789999997399188658843689999828899855751660
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 96899999999999589880899946989999
Q gi|254780924|r 522 TAFEAAYITQEARNSNPSILIIALADSDSEVE 553 (609)
Q Consensus 522 ~~~~n~~~~~~~~~~~~~~~iia~~~~~~~~~ 553 (609)
.|..--.++ +-+.|..|. +-.+|+.+.+
T Consensus 228 TDqH~~~iv---e~laPQGrl-aLIDDP~~LD 255 (338)
T TIGR02817 228 TDQHFKEIV---ELLAPQGRL-ALIDDPAELD 255 (338)
T ss_pred HHHHHHHHH---HHHCCCCCE-ECCCCCCCCC
T ss_conf 789999999---985678740-0002870016
No 375
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.26 E-value=0.1 Score=28.72 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=40.3
Q ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 999999998479908997199899999997699299978999899984893146799993599689
Q gi|254780924|r 460 GKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 460 g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
+..+.+.|++.|.++.+.|.+-+... .+..+..+ + .+.+ +..++.+|.++.+|++++=
T Consensus 344 a~~ii~~l~~~g~~v~~~DP~v~~~~-~~~~~~~~--~----~~~~-e~al~~~D~vVi~tDH~~f 401 (436)
T COG0677 344 ALDIIELLEEWGGEVLVYDPYVKELP-TREDGEGV--T----LAIL-EEALKDADAVVIATDHSEF 401 (436)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCCH-HHHHCCCC--C----HHHH-HHHHCCCCEEEEEECCHHH
T ss_conf 58999999971976999889887221-34530335--5----2547-9885448889998446775
No 376
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.26 E-value=0.19 Score=26.87 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=51.1
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCC--CEEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 7997-37748999999998479908997199899999997----699--2999789998999848------931467999
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGI--DVIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~--~~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|- |.+-+|+.+++.|.++|.+|++.|.|++..++..+ .|- ..+.+|.+|++..+++ ...+.|.+|
T Consensus 6 alITG~s~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~d~~~v~~~v~~~~~~~G~iDilv 85 (250)
T TIGR03206 6 AIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPVDVLV 85 (250)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99968576899999999998799999997988999999999995399289999448999999999999999759997999
Q ss_pred EEC
Q ss_conf 935
Q gi|254780924|r 518 VSI 520 (609)
Q Consensus 518 ~~~ 520 (609)
-+-
T Consensus 86 nnA 88 (250)
T TIGR03206 86 NNA 88 (250)
T ss_pred ECC
T ss_conf 898
No 377
>PRK00536 speE spermidine synthase; Provisional
Probab=95.25 E-value=0.17 Score=27.20 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=64.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHH-----HHHHCCHHHCCEEEEECCC
Q ss_conf 78179973774899999999847990899719989999999769929997899989-----9984893146799993599
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITK-----ILLMANIEKARSLVVSIST 522 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~-----~l~~~~i~~a~~vi~~~~~ 522 (609)
..+|+|+|+|.-| ++|++.++..++.++|-|++.++..++. .+.+.+.-.|+. -..+...++-|.+|+-..+
T Consensus 73 Pk~VLIIGGGDGG--~~REvlKH~~~v~~VEID~~Vv~~sk~y-lP~~~~~~~dpr~~~~~~~~~~~~~~fDvIIvDsl~ 149 (262)
T PRK00536 73 LKEVLIVDGFDLE--LAHQLFKYDTHVDFVQADEKILDSFISF-FPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQEP 149 (262)
T ss_pred CCEEEEECCCCHH--HHHHHHCCCCEEEEEEECHHHHHHHHHH-CHHHHHHHCCCCEEHHHHHHHHCCCCCCEEEECCCC
T ss_conf 7879998687559--9999872897669999678999999997-856565413996113999876154766889988999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 6899999999999589880899946989
Q gi|254780924|r 523 AFEAAYITQEARNSNPSILIIALADSDS 550 (609)
Q Consensus 523 ~~~n~~~~~~~~~~~~~~~iia~~~~~~ 550 (609)
+..-...+ -|.+.++.-+++.+.++-
T Consensus 150 ~~~~~~~l--~~~L~~~Gi~v~Q~esp~ 175 (262)
T PRK00536 150 DIHKIDGL--KRMLKEDGVFISVAKHPL 175 (262)
T ss_pred CCCHHHHH--HHHHCCCCEEEECCCCHH
T ss_conf 80549999--998589989998389712
No 378
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.24 E-value=0.096 Score=28.84 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=51.4
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 79973-7748999999998479908997199899999997----6992--999789998999848------931467999
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|-| .+.+|+.+++.|.++|.+|++.|.|++..++..+ .|.+ .+.+|.+|++-.++. ...+.|.+|
T Consensus 8 alVTG~s~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~fG~iDiLV 87 (258)
T PRK07890 8 VVVSGVGPGLGTTLAVRAAREGADVVLAARTAERLDEVAKQIDDLGRRALAVVTDITDEAQVANLVDAALERFGRVDVLV 87 (258)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99968565899999999998799899997989999999999996499589998169999999999999999849998999
Q ss_pred EE
Q ss_conf 93
Q gi|254780924|r 518 VS 519 (609)
Q Consensus 518 ~~ 519 (609)
-.
T Consensus 88 nn 89 (258)
T PRK07890 88 NN 89 (258)
T ss_pred EC
T ss_conf 86
No 379
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.23 E-value=0.11 Score=28.34 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=44.5
Q ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH----HCCCC--EEECCCCCHHHHHHC
Q ss_conf 7997-3774899999999847990899719989999999----76992--999789998999848
Q gi|254780924|r 451 VILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELR----SLGID--VIYGNATITKILLMA 508 (609)
Q Consensus 451 vii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~----~~g~~--~~~gd~~~~~~l~~~ 508 (609)
++|- |.+-+|+.+++.|.++|.+|++.|.|++.+++.. .+|.+ .+..|.+|++-.+++
T Consensus 9 avITGaasGIG~a~A~~la~~Ga~Vvi~d~~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~l 73 (275)
T PRK05876 9 AVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 99928266999999999998799899997988999999999982698479997888999999999
No 380
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.23 E-value=0.13 Score=27.86 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=48.4
Q ss_pred CEEEECCC---HHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHC-CC-CEEECCCCCHHHHHHCC------HHHCCE
Q ss_conf 17997377---48999999998479908997199899---9999976-99-29997899989998489------314679
Q gi|254780924|r 450 HVILVGYG---RIGKVIVQNLKAAGIALLVIEDSEKK---IEELRSL-GI-DVIYGNATITKILLMAN------IEKARS 515 (609)
Q Consensus 450 ~vii~G~g---~~g~~~~~~L~~~~~~v~vid~~~~~---~~~~~~~-g~-~~~~gd~~~~~~l~~~~------i~~a~~ 515 (609)
.++|-|.+ -+|+.+++.|.++|.+|++.+.|++. ++++.++ +- .++.+|.+|++..+++- ..+.|.
T Consensus 8 ~alVTGaa~~~GiG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD~ 87 (262)
T PRK07984 8 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDAMFAELGKVWPKFDG 87 (262)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 79998999972599999999998799999982777899999999975498289988899999999999999998387788
Q ss_pred EEEE
Q ss_conf 9993
Q gi|254780924|r 516 LVVS 519 (609)
Q Consensus 516 vi~~ 519 (609)
++-.
T Consensus 88 lVnn 91 (262)
T PRK07984 88 FVHS 91 (262)
T ss_pred EEEE
T ss_conf 9995
No 381
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.23 E-value=0.13 Score=27.84 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=49.0
Q ss_pred CEEEEC--C-CHHHHHHHHHHHHCCCCEEEECCCHHH-HHHHHH---CCCCEEECCCCCHHHHHHC------CHHHCCEE
Q ss_conf 179973--7-748999999998479908997199899-999997---6992999789998999848------93146799
Q gi|254780924|r 450 HVILVG--Y-GRIGKVIVQNLKAAGIALLVIEDSEKK-IEELRS---LGIDVIYGNATITKILLMA------NIEKARSL 516 (609)
Q Consensus 450 ~vii~G--~-g~~g~~~~~~L~~~~~~v~vid~~~~~-~~~~~~---~g~~~~~gd~~~~~~l~~~------~i~~a~~v 516 (609)
.++|-| . .-+|+.+++.|.++|.+|++.+.|++. .++..+ ....++..|.+|++-.+++ ...+.|.+
T Consensus 9 ~~lVTG~~~~~GIG~a~A~~la~~GA~Vvi~~~~~~~~~~~~~~~~~~~~~~i~~Dv~~~~~v~~~~~~~~~~~G~lD~l 88 (256)
T PRK07889 9 RILVTGVITDSSIAFHIARVAQEQGAEVVLTGFRRLRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHIGGLDGV 88 (256)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 79998998856899999999998799999983893589999998658887599942889999999999999986897879
Q ss_pred EE
Q ss_conf 99
Q gi|254780924|r 517 VV 518 (609)
Q Consensus 517 i~ 518 (609)
|-
T Consensus 89 Vn 90 (256)
T PRK07889 89 VH 90 (256)
T ss_pred EE
T ss_conf 74
No 382
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.19 E-value=0.19 Score=26.73 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=52.6
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC----CCCEEECCCCCHHHHHHC------CHHHCCEEEE
Q ss_conf 1799737-7489999999984799089971998999999976----992999789998999848------9314679999
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL----GIDVIYGNATITKILLMA------NIEKARSLVV 518 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~----g~~~~~gd~~~~~~l~~~------~i~~a~~vi~ 518 (609)
.++|-|. .-+|+.+++.|.++|.+|++.+.|++..+++.++ +...+.+|.+|++-.+++ ...+.|.+|-
T Consensus 7 valITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~Dv~d~~~v~~~v~~~~~~~G~iDiLVN 86 (235)
T PRK07326 7 AALVTGGSKGIGFAVAEALAAAGYRVAICARDESELEAAAQELGKRNVLGLACDVRDEADVRQAVDAHVEAFGGLDILVN 86 (235)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99993826799999999999879999999898899999999842398699996389999999999999998299669998
Q ss_pred E
Q ss_conf 3
Q gi|254780924|r 519 S 519 (609)
Q Consensus 519 ~ 519 (609)
.
T Consensus 87 N 87 (235)
T PRK07326 87 N 87 (235)
T ss_pred C
T ss_conf 8
No 383
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.18 E-value=0.14 Score=27.71 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=49.1
Q ss_pred CEEEECCC---HHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHHC-CC-CEEECCCCCHHHHHHC------CHHHCCE
Q ss_conf 17997377---4899999999847990899719989---99999976-99-2999789998999848------9314679
Q gi|254780924|r 450 HVILVGYG---RIGKVIVQNLKAAGIALLVIEDSEK---KIEELRSL-GI-DVIYGNATITKILLMA------NIEKARS 515 (609)
Q Consensus 450 ~vii~G~g---~~g~~~~~~L~~~~~~v~vid~~~~---~~~~~~~~-g~-~~~~gd~~~~~~l~~~------~i~~a~~ 515 (609)
.++|.|.+ .+|+.+++.|.++|.+|++...+++ +++++.++ |. .++..|.+|++..+++ ...+.|.
T Consensus 12 ~alITGaag~~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDi 91 (272)
T PRK08159 12 RGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVVGHCDVTDEASIDAVFETLEKKWGKLDF 91 (272)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 99998899986899999999998699999974866899999999986498189983789999999999999998699788
Q ss_pred EEEE
Q ss_conf 9993
Q gi|254780924|r 516 LVVS 519 (609)
Q Consensus 516 vi~~ 519 (609)
+|-.
T Consensus 92 LVnn 95 (272)
T PRK08159 92 VVHA 95 (272)
T ss_pred EEEC
T ss_conf 9853
No 384
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.18 E-value=0.087 Score=29.14 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=59.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHH---HCCHHHCCEEEEECC---
Q ss_conf 17997377489999999984799--0899719989999999769929997899989998---489314679999359---
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSLGIDVIYGNATITKILL---MANIEKARSLVVSIS--- 521 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~---~~~i~~a~~vi~~~~--- 521 (609)
.|.|+|.|++|+.++-.|..++. +++++|-+++..+--..+-.+...-...+..+.. -..++.+|.++++-+
T Consensus 2 KV~viGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~pr 81 (313)
T COG0039 2 KVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVPR 81 (313)
T ss_pred EEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCHHHCCHHCCCCEEEECCCCHHHHCCCCEEEEECCCCC
T ss_conf 39998987478999999962555665999974666564011025334000267618834787023169989999688889
Q ss_pred ------CH--HHHH----HHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf ------96--8999----99999999589880899946989999
Q gi|254780924|r 522 ------TA--FEAA----YITQEARNSNPSILIIALADSDSEVE 553 (609)
Q Consensus 522 ------~~--~~n~----~~~~~~~~~~~~~~iia~~~~~~~~~ 553 (609)
+| +.|. .+...+++.+|+..++ .+.|+-+.-
T Consensus 82 KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivl-VvtNPvD~~ 124 (313)
T COG0039 82 KPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVL-VVTNPVDIL 124 (313)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE-EECCCHHHH
T ss_conf 9899779999865999999999999659972999-945947889
No 385
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.17 E-value=0.033 Score=32.04 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=53.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCC--------HHH----HHHHHHCCCCEEECCCC-----CHHHHHHCCH
Q ss_conf 781799737748999999998479908997199--------899----99999769929997899-----9899984893
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS--------EKK----IEELRSLGIDVIYGNAT-----ITKILLMANI 510 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~--------~~~----~~~~~~~g~~~~~gd~~-----~~~~l~~~~i 510 (609)
..+++|+|.|-+|-++|..|.+.|.+|.++|.. ++. .+.++++|++...++.. +.-.++.-..
T Consensus 148 ~k~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~~~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~v~~~~g~~ 227 (438)
T PRK13512 148 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEITFKSGKV 227 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCEEEEEECCE
T ss_conf 97799989558999999999972990899993573120049999999999998689999958779999797999932889
Q ss_pred HHCCEEEEECCCH
Q ss_conf 1467999935996
Q gi|254780924|r 511 EKARSLVVSISTA 523 (609)
Q Consensus 511 ~~a~~vi~~~~~~ 523 (609)
.++|.++.+++-.
T Consensus 228 ~~~D~vi~a~G~~ 240 (438)
T PRK13512 228 EHYDMIIEGVGTH 240 (438)
T ss_pred EEECEEEEEEECC
T ss_conf 7407899967100
No 386
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.16 E-value=0.2 Score=26.67 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=51.8
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH----HCCCC--EEECCCCCHHHHHHC------CHHHCCEEE
Q ss_conf 79973-774899999999847990899719989999999----76992--999789998999848------931467999
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELR----SLGID--VIYGNATITKILLMA------NIEKARSLV 517 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~----~~g~~--~~~gd~~~~~~l~~~------~i~~a~~vi 517 (609)
++|.| ..-+|+.+++.|.++|.+|++.|.|++..+... +.|-+ .+..|.+|++-.+++ ...+.|.+|
T Consensus 10 alVTGgs~GIG~a~A~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLV 89 (262)
T PRK13394 10 AVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSVDILV 89 (262)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99958577899999999998799999997988999999999996299399998158999999999999999819999999
Q ss_pred EEC
Q ss_conf 935
Q gi|254780924|r 518 VSI 520 (609)
Q Consensus 518 ~~~ 520 (609)
-.-
T Consensus 90 nnA 92 (262)
T PRK13394 90 SNA 92 (262)
T ss_pred ECC
T ss_conf 899
No 387
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=95.15 E-value=0.12 Score=28.07 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=61.4
Q ss_pred CEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0899719989999999----76992999789998999848931467999935996-899999999999589880899946
Q gi|254780924|r 473 ALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSISTA-FEAAYITQEARNSNPSILIIALAD 547 (609)
Q Consensus 473 ~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~ 547 (609)
++.+||+|++..+.+. +.|+++.+. .+-.+.++...-++.|.++.-..=+ ..-...|...|+.++..+|+.-+.
T Consensus 2 kILlVEDd~~l~~~l~~~L~~~g~~V~~a-~~g~~a~~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~~~~~PII~lta 80 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWF-TQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA 80 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEC
T ss_conf 89999389999999999999879999998-99999999986289699999799999985631010465278887899806
Q ss_pred CHHHHH--HHHHCCCCEEE-CH
Q ss_conf 989999--99976998787-65
Q gi|254780924|r 548 SDSEVE--HLTRYGADTVV-MS 566 (609)
Q Consensus 548 ~~~~~~--~l~~~Ga~~vi-~p 566 (609)
..+..+ .-.++|||.-+ -|
T Consensus 81 ~~~~~d~i~~l~~GAdDYl~KP 102 (219)
T PRK10336 81 RDALAERVEGLRLGADDYLCKP 102 (219)
T ss_pred CCCHHHHHHHHHCCCCEEEECC
T ss_conf 8999999999976998886889
No 388
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=95.14 E-value=0.2 Score=26.63 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=62.5
Q ss_pred CCCEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHC--CCCEEE
Q ss_conf 990899719989999999----7699299978999899984893146799993599-689999999999958--988089
Q gi|254780924|r 471 GIALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSN--PSILII 543 (609)
Q Consensus 471 ~~~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~--~~~~ii 543 (609)
...+.+||+|++..+.+. .+|+++... .+-.+.++...-++.|.++.-..= +..-...|...|+.+ ++++|+
T Consensus 2 ~~kILiVEDd~~l~~~l~~~L~~~g~~v~~a-~~g~~a~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII 80 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEA-EDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 9719999599999999999999779999998-999999999852899899997899887633587887750246897589
Q ss_pred EEECCHHHHHH--HHHCCCCEEECHHHH
Q ss_conf 99469899999--997699878765899
Q gi|254780924|r 544 ALADSDSEVEH--LTRYGADTVVMSARE 569 (609)
Q Consensus 544 a~~~~~~~~~~--l~~~Ga~~vi~p~~~ 569 (609)
.-+...+..+. -.++|||.-+...+.
T Consensus 81 ~lta~~~~~d~v~gl~~GADDYl~KPf~ 108 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFS 108 (229)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 9955666577999987698765208999
No 389
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.13 E-value=0.2 Score=26.62 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=53.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC----CCEEEECCC-HHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCC
Q ss_conf 81799737748999999998479----908997199-8999999976-99299978999899984893146799993599
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAG----IALLVIEDS-EKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSIST 522 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~----~~v~vid~~-~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~ 522 (609)
.+|-++|+|.+|+.+++-+.+.+ .++.+.+.+ +++.+.+.+. +.+... | +.+. +.++|.++.++--
T Consensus 4 m~I~fIG~GnMg~Aii~gl~~~~~~~~~~i~v~~r~~~~~~~~l~~~~~v~~~~-~--~~~~-----~~~~diI~LaVKP 75 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTH-N--KKEL-----LTDANILFLAMKP 75 (279)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCEEEC-C--HHHH-----HHHCCEEEEECCH
T ss_conf 889998768999999999997879997579997898499999999971966637-7--7999-----8449999995278
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 689999999999958988089994
Q gi|254780924|r 523 AFEAAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 523 ~~~n~~~~~~~~~~~~~~~iia~~ 546 (609)
.+..-.+........++..++..+
T Consensus 76 ~~~~~v~~~i~~~~~~~~~iISi~ 99 (279)
T PRK07679 76 KDVAEALTPFKEYIHNNVLIISLL 99 (279)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 999999999875458992999974
No 390
>PRK07208 hypothetical protein; Provisional
Probab=95.12 E-value=0.03 Score=32.32 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999987
Q gi|254780924|r 569 EIALGMLDRLN 579 (609)
Q Consensus 569 ~~a~~~~~~l~ 579 (609)
.+|.+.++++.
T Consensus 442 ~~g~~aa~~i~ 452 (474)
T PRK07208 442 LTAMLAVENII 452 (474)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999997
No 391
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.12 E-value=0.12 Score=28.15 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=43.0
Q ss_pred EEEECCCH-HHHHHHHHHHHCCCCEEEECC-CHHHHHHHHHC-CCC--EEECCCCCHHHHHHC
Q ss_conf 79973774-899999999847990899719-98999999976-992--999789998999848
Q gi|254780924|r 451 VILVGYGR-IGKVIVQNLKAAGIALLVIED-SEKKIEELRSL-GID--VIYGNATITKILLMA 508 (609)
Q Consensus 451 vii~G~g~-~g~~~~~~L~~~~~~v~vid~-~~~~~~~~~~~-g~~--~~~gd~~~~~~l~~~ 508 (609)
++|-|.++ +|+.+++.|.++|.+|++.+. +++..+++.++ +.+ .+.+|.+|++-.+++
T Consensus 9 alVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~ 71 (254)
T PRK08642 9 VLVTGGSRGLGAAIARAFAREGARVVVNYHRSEDAAEALADELGDRAIAIQADVTDRNQVDAM 71 (254)
T ss_pred EEEECHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH
T ss_conf 999781119999999999987999999618988999999998199469998069999999999
No 392
>PRK11173 two-component response regulator; Provisional
Probab=95.12 E-value=0.2 Score=26.59 Aligned_cols=95 Identities=18% Similarity=0.263 Sum_probs=61.7
Q ss_pred CCCEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 990899719989999999----76992999789998999848931467999935996-8999999999995898808999
Q gi|254780924|r 471 GIALLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSISTA-FEAAYITQEARNSNPSILIIAL 545 (609)
Q Consensus 471 ~~~v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~ 545 (609)
..++.+||+|++..+.+. .+|+++... .+-.+.++...-++.|.++.-..-+ ..-..+|...|+..+ .+||.-
T Consensus 3 ~~~ILiVEDD~~~~~~l~~~L~~~G~~V~~a-~~~~ea~~~l~~~~~DlvilDi~lp~~~G~~l~~~iR~~~~-~piI~l 80 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEA-TDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQAN-VALMFL 80 (237)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCC-CCEEEE
T ss_conf 9989999598999999999999889999998-99999999986389989999389998873035556651688-478999
Q ss_pred ECCHHHHHH--HHHCCCC-EEECHH
Q ss_conf 469899999--9976998-787658
Q gi|254780924|r 546 ADSDSEVEH--LTRYGAD-TVVMSA 567 (609)
Q Consensus 546 ~~~~~~~~~--l~~~Ga~-~vi~p~ 567 (609)
+...+..+. -.++||| ++.-|.
T Consensus 81 ta~~~~~~~i~~l~~GaddYi~KPf 105 (237)
T PRK11173 81 TGRDNEVDKILGLEIGADDYITKPF 105 (237)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 4325778899999769767887898
No 393
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=95.11 E-value=0.093 Score=28.93 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=49.7
Q ss_pred CCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC------CHHHCCEEEEE
Q ss_conf 7817997--377489999999984799089971998999999976992999789998999848------93146799993
Q gi|254780924|r 448 CDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA------NIEKARSLVVS 519 (609)
Q Consensus 448 ~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~------~i~~a~~vi~~ 519 (609)
+++++++ |.+-+|+.+++.|.++|.+|++.|.|++.. .+.....+..|.+|++-.+++ ...+.|.+|-.
T Consensus 8 ~gKvalVTGgs~GIG~aia~~la~~Ga~V~~~d~~~~~~---~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVNN 84 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVEELLAQGANVQMVDIHGGDE---KHKGYQFWPTDISSAKEVNHTVAEIIERFGRIDGLVNN 84 (266)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHC---CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 999799947787899999999998799999997885350---58976999816999999999999999983998899988
Q ss_pred C
Q ss_conf 5
Q gi|254780924|r 520 I 520 (609)
Q Consensus 520 ~ 520 (609)
-
T Consensus 85 A 85 (266)
T PRK06171 85 A 85 (266)
T ss_pred C
T ss_conf 8
No 394
>PRK08328 hypothetical protein; Provisional
Probab=95.09 E-value=0.21 Score=26.54 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=61.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHH------------------------HHHHC--CCC--EE
Q ss_conf 1347817997377489999999984799-0899719989999------------------------99976--992--99
Q gi|254780924|r 445 TDLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIE------------------------ELRSL--GID--VI 495 (609)
Q Consensus 445 ~~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~------------------------~~~~~--g~~--~~ 495 (609)
.=.+.||+|+|.|-.|..++..|...|. ++.++|.|.-... ++++- ..+ .+
T Consensus 24 kL~~s~VlvvG~GGlGs~~~~~La~~GvG~i~lvD~D~ve~SNLnRQil~~~~diG~~~K~~~a~~~l~~iNp~v~i~~~ 103 (230)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGTVLLIDEQTPELSNLNRQILHWEEDVGKNPKPISAKWKLERFNSDIKIETF 103 (230)
T ss_pred HHHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCEEEEHH
T ss_conf 98559789988787899999999984898689874878751563255403087747710399999999975995057526
Q ss_pred ECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 978999899984893146799993599689999999999958
Q gi|254780924|r 496 YGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSN 537 (609)
Q Consensus 496 ~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~ 537 (609)
....+.++ .++ -+++.|.++-++||.++-..+-..+++.+
T Consensus 104 ~~~i~~~n-~~~-ll~~~DlViD~tDn~~tr~~ln~~c~~~~ 143 (230)
T PRK08328 104 VGRLTEEN-IDE-VLKGVDVIVDCLDNFETRYLLDDYAHKKG 143 (230)
T ss_pred HHHHHHHH-HHH-HHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 64423777-986-20059899998899899999999999839
No 395
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=95.09 E-value=0.21 Score=26.54 Aligned_cols=93 Identities=16% Similarity=0.259 Sum_probs=54.8
Q ss_pred EEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEEEEC-
Q ss_conf 899719989999999----7699299978999899984893146799993599-6899999999999589880899946-
Q gi|254780924|r 474 LLVIEDSEKKIEELR----SLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSNPSILIIALAD- 547 (609)
Q Consensus 474 v~vid~~~~~~~~~~----~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~~~~~iia~~~- 547 (609)
+.++|+|+...+.++ +.|+++... .+-.+.++...-++.|.++.-..= +..-...+...|+.+++.+|+.-+.
T Consensus 1 ILvVDD~~~~~~~l~~~L~~~g~~v~~a-~~g~~al~~~~~~~~dlvi~Di~mP~~dG~el~~~ir~~~~~~piI~~T~~ 79 (111)
T pfam00072 1 VLIVDDDPLIRELLRQLLEKEGYVVAEA-DDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRPPTTPVIVLTAH 79 (111)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 0999898999999999999889999998-999999999984799899995368995015799999735999809999750
Q ss_pred -CHHHHHHHHHCCCCEEECHH
Q ss_conf -98999999976998787658
Q gi|254780924|r 548 -SDSEVEHLTRYGADTVVMSA 567 (609)
Q Consensus 548 -~~~~~~~l~~~Ga~~vi~p~ 567 (609)
+.++..+..++|++..+.-.
T Consensus 80 ~~~~~~~~a~~~Ga~~yl~KP 100 (111)
T pfam00072 80 GDEEDAVEALKAGANDFLSKP 100 (111)
T ss_pred CCHHHHHHHHHCCCCEEEECC
T ss_conf 899999999977987799499
No 396
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.09 E-value=0.022 Score=33.23 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=6.6
Q ss_pred EEECCCHHHHHHHHH
Q ss_conf 997377489999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQN 466 (609)
Q Consensus 452 ii~G~g~~g~~~~~~ 466 (609)
.++|+.-..+.+-+.
T Consensus 160 lvVgADG~~S~vR~~ 174 (395)
T PRK05732 160 LLVAADGTHSALREQ 174 (395)
T ss_pred EEEEECCCCHHHHHH
T ss_conf 999928996254453
No 397
>PRK01581 speE spermidine synthase; Validated
Probab=95.08 E-value=0.21 Score=26.52 Aligned_cols=111 Identities=12% Similarity=0.165 Sum_probs=77.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC--------------CCCEEECCCCCHHHHHHCCHH
Q ss_conf 47817997377489999999984799-089971998999999976--------------992999789998999848931
Q gi|254780924|r 447 LCDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL--------------GIDVIYGNATITKILLMANIE 511 (609)
Q Consensus 447 ~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~--------------g~~~~~gd~~~~~~l~~~~i~ 511 (609)
..++|+|+|+|. |-.+-+.|+-.+. .|+.+|-||+.++-++.. -.+++.+|+ -+.| +..-+
T Consensus 139 ~~~rVLILGGGD-GLAlREVLKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DA--f~wL-~~~~~ 214 (363)
T PRK01581 139 DPKRVLILGGGD-GLALREVLKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDA--KEFL-SSPSS 214 (363)
T ss_pred CCCEEEEEECCC-HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCH--HHHH-HCCCC
T ss_conf 877389980764-3999998717985627899569999998751979987512001498049992108--9998-61675
Q ss_pred HCCEEEEECCCHHHHH--------HHHHHHHHHCCCCEEEEEECCHHHHH--------HHHHCCCC
Q ss_conf 4679999359968999--------99999999589880899946989999--------99976998
Q gi|254780924|r 512 KARSLVVSISTAFEAA--------YITQEARNSNPSILIIALADSDSEVE--------HLTRYGAD 561 (609)
Q Consensus 512 ~a~~vi~~~~~~~~n~--------~~~~~~~~~~~~~~iia~~~~~~~~~--------~l~~~Ga~ 561 (609)
..|.+|+-.+|+..-. +-.+..+.+.|+..+++.+.++-++. .++.+|-+
T Consensus 215 ~FDvIIVDlPDP~n~~L~KLYS~eFY~Ll~~~La~dG~~vVQSTSPyfApkaFWsI~~Tl~aAGl~ 280 (363)
T PRK01581 215 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLT 280 (363)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHHHHCCCC
T ss_conf 442899958999862466673599999999861988539996079765762336777779873675
No 398
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.17 Score=27.06 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=47.3
Q ss_pred EEE-CCCHHHHHHHHHHHHCCCCEEE-ECCCHHHHHHHH----HCCCC--EEECCCCCHHHHHHC------------CHH
Q ss_conf 997-3774899999999847990899-719989999999----76992--999789998999848------------931
Q gi|254780924|r 452 ILV-GYGRIGKVIVQNLKAAGIALLV-IEDSEKKIEELR----SLGID--VIYGNATITKILLMA------------NIE 511 (609)
Q Consensus 452 ii~-G~g~~g~~~~~~L~~~~~~v~v-id~~~~~~~~~~----~~g~~--~~~gd~~~~~~l~~~------------~i~ 511 (609)
+|- |.+.+|+.+++.|.++|.+|++ .+.|++..++.. +.+.+ ++.+|.++++-.++. +-.
T Consensus 10 lITGga~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~~~g~g 89 (254)
T PRK12746 10 LVTGASRGIGRAIAMRLANDGALVAIHYGRNKAAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQIRVGTS 89 (254)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99484768999999999987999999659998999999999985599289997577999999999999999986641689
Q ss_pred HCCEEEEEC
Q ss_conf 467999935
Q gi|254780924|r 512 KARSLVVSI 520 (609)
Q Consensus 512 ~a~~vi~~~ 520 (609)
+.|.+|..-
T Consensus 90 ~iDiLVnnA 98 (254)
T PRK12746 90 EIDILVNNA 98 (254)
T ss_pred CCCEEEECC
T ss_conf 851899799
No 399
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.07 E-value=0.17 Score=27.08 Aligned_cols=123 Identities=17% Similarity=0.285 Sum_probs=65.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCC-HHHHHHHHHC-CCCEEEC--CCCCHHHHHHCCHHHCCEEEEEC
Q ss_conf 134781799737748999999998479908997199-8999999976-9929997--89998999848931467999935
Q gi|254780924|r 445 TDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS-EKKIEELRSL-GIDVIYG--NATITKILLMANIEKARSLVVSI 520 (609)
Q Consensus 445 ~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~-~~~~~~~~~~-g~~~~~g--d~~~~~~l~~~~i~~a~~vi~~~ 520 (609)
++.++=+||=|-|+.|+-.++.++..|++|.+.|.+ ++..++..+. ++-++.- +.| .++.++..=-..+.+++-.
T Consensus 96 ~~~~~i~IIGG~G~mG~~F~~~f~~sGy~V~ild~~dw~~~~~~~~~advViVsVPI~~T-~~VI~~l~~l~~~~lL~Di 174 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEKDDWDRADDILADAGMVIVSVPIHLT-EEVIEKLPPLPEDCILVDL 174 (374)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCEEEEEECHHHH-HHHHHHCCCCCCCCEEEEC
T ss_conf 998717998079827799999999679879961644453489887179989998145889-9999857789998689861
Q ss_pred CCHHH-HHHHHHHHHH---------HCCC-----CEEEEEECCH--HHH----HHHHHCCCCEEECHHH
Q ss_conf 99689-9999999999---------5898-----8089994698--999----9999769987876589
Q gi|254780924|r 521 STAFE-AAYITQEARN---------SNPS-----ILIIALADSD--SEV----EHLTRYGADTVVMSAR 568 (609)
Q Consensus 521 ~~~~~-n~~~~~~~~~---------~~~~-----~~iia~~~~~--~~~----~~l~~~Ga~~vi~p~~ 568 (609)
.+-.. -+.+.+...+ .+|+ .++++.++.+ +.. +.++.-|+..+..+..
T Consensus 175 TSvK~~Pl~aMl~~h~gpV~GlHPMFGP~v~sl~~QvVV~c~gr~~e~~~wl~~~~~~~Ga~l~~~~~~ 243 (374)
T PRK11199 175 TSVKNGPLQAMLAAHSGPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQIWGARLHRISAV 243 (374)
T ss_pred HHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEEECCHH
T ss_conf 004278999999856898502277879996444787699889998377899999999848789986888
No 400
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.04 E-value=0.17 Score=27.13 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=72.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEE-C-CCHHHHHHHHHCC--CCEEECCC-------------------CCHHH
Q ss_conf 1799737748999999998479--908997-1-9989999999769--92999789-------------------99899
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAG--IALLVI-E-DSEKKIEELRSLG--IDVIYGNA-------------------TITKI 504 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~--~~v~vi-d-~~~~~~~~~~~~g--~~~~~gd~-------------------~~~~~ 504 (609)
+|-|=||||+||.++|.+.+++ .+++.| | .+++...++.+++ +..+-++. .||+.
T Consensus 3 kV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~Llk~Ds~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p~~ 82 (335)
T COG0057 3 KVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDPAN 82 (335)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCHHH
T ss_conf 89994575788999999971789759999936899789989986425578877732247874898995268873289687
Q ss_pred HHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH--------HHHHHCCCCEEECHHHHHHHHHHH
Q ss_conf 984893146799993599689999999999958988089994698999--------999976998787658999999999
Q gi|254780924|r 505 LLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALADSDSEV--------EHLTRYGADTVVMSAREIALGMLD 576 (609)
Q Consensus 505 l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~~~~~~--------~~l~~~Ga~~vi~p~~~~a~~~~~ 576 (609)
|.-.... .|.++=||+....--....+.+..+.+ +++--+...++. +...+. -+.+|+--..+-..++.
T Consensus 83 l~w~d~g-vdiVve~Tg~f~~~e~~~~hl~agGaK-kV~isap~~~~~~~vv~gvn~~~~~~-~~~iVsnaSCTTNcLap 159 (335)
T COG0057 83 LPWADLG-VDIVVECTGKFTGREKAEKHLKAGGAK-KVLISAPGKDDVATVVYGVNHNYYDA-GHTIVSNASCTTNCLAP 159 (335)
T ss_pred CCCCCCC-CCEEEECCCCCCCHHHHHHHHHHCCCC-EEEECCCCCCCCCEEEEECCCCCCCC-CCCEEEECCCHHHHHHH
T ss_conf 9812128-639998998766633479998745997-89985789888617998525133578-88489874511300678
Q ss_pred HHH
Q ss_conf 987
Q gi|254780924|r 577 RLN 579 (609)
Q Consensus 577 ~l~ 579 (609)
.+.
T Consensus 160 ~~k 162 (335)
T COG0057 160 VAK 162 (335)
T ss_pred HHH
T ss_conf 799
No 401
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=95.04 E-value=0.21 Score=26.44 Aligned_cols=110 Identities=13% Similarity=0.192 Sum_probs=65.8
Q ss_pred CCCEEEECCCHHHHHHHHH-----CCCCEEECCCCC-HHHHHHCCHHHCCEEEEEC--CCH--HHHHHHHHHHHHHCCCC
Q ss_conf 9908997199899999997-----699299978999-8999848931467999935--996--89999999999958988
Q gi|254780924|r 471 GIALLVIEDSEKKIEELRS-----LGIDVIYGNATI-TKILLMANIEKARSLVVSI--STA--FEAAYITQEARNSNPSI 540 (609)
Q Consensus 471 ~~~v~vid~~~~~~~~~~~-----~g~~~~~gd~~~-~~~l~~~~i~~a~~vi~~~--~~~--~~n~~~~~~~~~~~~~~ 540 (609)
.+.++++|++|-..+-++. .++++ .|.+.| .+.++...-.+.|.++.-. +++ ...+..+..+|+.+|+.
T Consensus 3 ~irIlIvDDh~lvr~Gl~~~L~~~~~~~v-vg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~ 81 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNV-VGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSL 81 (216)
T ss_pred CCEEEEECCHHHHHHHHHHHHCCCCCCEE-EEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 88899988979999999999815999689-99879999999998623989899826779998878999999999858998
Q ss_pred EEEEEE--CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHH
Q ss_conf 089994--698999999976998787658999999999987421
Q gi|254780924|r 541 LIIALA--DSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQVH 582 (609)
Q Consensus 541 ~iia~~--~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~~ 582 (609)
++++-+ +++.+.....++||+-.+... ....++.+.+....
T Consensus 82 ~vivls~~~~~~~v~~al~~Ga~Gyl~K~-~~~~~L~~AI~~v~ 124 (216)
T PRK10840 82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQ-GAPTDLPKALAALQ 124 (216)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECC-CCHHHHHHHHHHHH
T ss_conf 08998477878999999858974899878-99999999999998
No 402
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=95.02 E-value=0.14 Score=27.74 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=56.4
Q ss_pred HHCCCCEEEECCCHHHHHH----HHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH-HHHHHHHHHHHHHCCCCEE
Q ss_conf 8479908997199899999----9976992999789998999848931467999935996-8999999999995898808
Q gi|254780924|r 468 KAAGIALLVIEDSEKKIEE----LRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA-FEAAYITQEARNSNPSILI 542 (609)
Q Consensus 468 ~~~~~~v~vid~~~~~~~~----~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~i 542 (609)
.++...+.+||+|++..+. ++..|+.+... .+-.+.++...-++.|.++.-..=+ ......+...|+.. +.++
T Consensus 7 ~~~~~kILlVEDd~~l~~~l~~~L~~~g~~V~~a-~~~~eal~~~~~~~~DliilDi~lp~~~Gl~l~~~lr~~~-~~pi 84 (240)
T PRK10710 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLI-SHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFS-DIPI 84 (240)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCCC-CCCE
T ss_conf 9998879999298999999999999889999998-9999999999737998999879998887763211221157-6468
Q ss_pred EEEECCHHHHHH--HHHCCCCEEECHHH
Q ss_conf 999469899999--99769987876589
Q gi|254780924|r 543 IALADSDSEVEH--LTRYGADTVVMSAR 568 (609)
Q Consensus 543 ia~~~~~~~~~~--l~~~Ga~~vi~p~~ 568 (609)
|.-+...+.... -.++|||..+....
T Consensus 85 I~lta~~~~~~~~~al~~GAddYl~KPf 112 (240)
T PRK10710 85 VMVTAKIEEIDRLLGLEIGADDYICKPY 112 (240)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEECCCC
T ss_conf 9981678889999999869987600776
No 403
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.01 E-value=0.13 Score=28.00 Aligned_cols=113 Identities=18% Similarity=0.249 Sum_probs=71.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHH
Q ss_conf 7817997377489999999984799089971998999999976-992999789998999848931467999935996899
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTAFEA 526 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n 526 (609)
..+++|+|.|-.++.++-.|.+.|.++.+++.++++.+++.+. +.+ ..+.+.+. ..+++|.+|.+|+....
T Consensus 332 ~~~~~vlGaGGaarAi~~~l~~~g~~i~I~nRt~~ka~~La~~~~~~-----~~~~~~l~--~~~~~dliIn~tp~~~~- 403 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARQGAELLIFNRTKAHAEALASRCQGK-----AFPLGSLP--ELHTIDIIINCLPPSVT- 403 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC-----EEEHHHHH--HCCCCCEEEECCCCCCC-
T ss_conf 46224424750799999999867997999979989999999874886-----75356653--16778989989899877-
Q ss_pred HHHHHHHHHHCCCCEEEEEECCHHH---HHHHHHCCCCEEECHHHHHHHHHHH
Q ss_conf 9999999995898808999469899---9999976998787658999999999
Q gi|254780924|r 527 AYITQEARNSNPSILIIALADSDSE---VEHLTRYGADTVVMSAREIALGMLD 576 (609)
Q Consensus 527 ~~~~~~~~~~~~~~~iia~~~~~~~---~~~l~~~Ga~~vi~p~~~~a~~~~~ 576 (609)
..+..+. -++-.+-++.+ .+.-++.|+ .+++=.+.--.|-++
T Consensus 404 ------~~~~~~~-~v~D~vY~P~~T~lL~~A~~~G~-~~v~GleMLv~Qa~~ 448 (477)
T PRK09310 404 ------IPEAFPP-VVVDINTLPKHSPYTQYARKHGS-SIIYGYEMFAEQALL 448 (477)
T ss_pred ------CCCCCCC-EEEEEECCCCCCHHHHHHHHCCC-EEECCHHHHHHHHHH
T ss_conf ------7531288-89999638847999999998759-887859999999999
No 404
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=94.98 E-value=0.13 Score=27.83 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=60.4
Q ss_pred HHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEE-E--CCCHHHHHHHHHHHHHHC
Q ss_conf 9999999847990899719989999999769929997899989998489314679999-3--599689999999999958
Q gi|254780924|r 461 KVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVV-S--ISTAFEAAYITQEARNSN 537 (609)
Q Consensus 461 ~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~-~--~~~~~~n~~~~~~~~~~~ 537 (609)
..++..|+++|++|..+|.|.+ .++..+.+.-++.|.+-. + +.+......++..+|+.+
T Consensus 18 ~~la~~l~~~G~~V~~~d~~~~------------------~~~i~~~i~~~~pdiVgiS~~~~~~~~~~~~l~~~ik~~~ 79 (121)
T pfam02310 18 NYVAAALRAAGFEVILLGADVP------------------PEDIVEAIRAENPDVVGLSALMTTNLPAAKELARLLKRIR 79 (121)
T ss_pred HHHHHHHHHCCCCCCCEECCCC------------------HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999985995001024799------------------9999999998099999995232112113689999999859
Q ss_pred CCCEEEEEECCH--HHHHHHHH-CCCCEEECHHHH
Q ss_conf 988089994698--99999997-699878765899
Q gi|254780924|r 538 PSILIIALADSD--SEVEHLTR-YGADTVVMSARE 569 (609)
Q Consensus 538 ~~~~iia~~~~~--~~~~~l~~-~Ga~~vi~p~~~ 569 (609)
|+.++++-=... ...+.+++ .|+|.++.-+-+
T Consensus 80 p~~~iv~GG~~~t~~p~~~l~~~~~~D~vv~GEgE 114 (121)
T pfam02310 80 PGVKVVVGGPHPTADPEEVLRAAPGIDDVVRGEGE 114 (121)
T ss_pred CCCEEEEECCCCCCCHHHHHHCCCCCCEEEECCCH
T ss_conf 89759983876341899998408997589989768
No 405
>PRK10403 transcriptional regulator NarP; Provisional
Probab=94.98 E-value=0.22 Score=26.34 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=59.9
Q ss_pred CCCEEEECCCHHHHHHHHH-----CCCCEEECCCCCHHHHHHCCHHHCCEEEEECC-CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9908997199899999997-----69929997899989998489314679999359-96899999999999589880899
Q gi|254780924|r 471 GIALLVIEDSEKKIEELRS-----LGIDVIYGNATITKILLMANIEKARSLVVSIS-TAFEAAYITQEARNSNPSILIIA 544 (609)
Q Consensus 471 ~~~v~vid~~~~~~~~~~~-----~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~-~~~~n~~~~~~~~~~~~~~~iia 544 (609)
-+.|+++|+++-..+-++. .+++++.--.+-++.++...-.+.|.++.-.. .+......+...|+.+|..++++
T Consensus 6 pirIlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~~~~~~~~~~~pDlvllD~~lp~~~G~~~~~~l~~~~p~~~iiv 85 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIII 85 (215)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCEEE
T ss_conf 75799983989999999999975899289999899999999986449989998089989987412335654188773688
Q ss_pred EE--CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHH
Q ss_conf 94--6989999999769987876589999999999874
Q gi|254780924|r 545 LA--DSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQ 580 (609)
Q Consensus 545 ~~--~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~ 580 (609)
-+ +++++.....++|++..+.... ...++.+.+..
T Consensus 86 lt~~~~~~~~~~al~~Ga~gyl~K~~-~~~~l~~ai~~ 122 (215)
T PRK10403 86 LTVSDASSDIFALIDAGADGYLLKDS-DPEVLLEAIRA 122 (215)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHH
T ss_conf 63243236789987468766884899-99999999999
No 406
>PRK06484 short chain dehydrogenase; Validated
Probab=94.98 E-value=0.13 Score=27.91 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=7.5
Q ss_pred HHHHHHHCCCCEEECCCC
Q ss_conf 999999769929997899
Q gi|254780924|r 483 KIEELRSLGIDVIYGNAT 500 (609)
Q Consensus 483 ~~~~~~~~g~~~~~gd~~ 500 (609)
.++++.++|.+++.-|-.
T Consensus 290 iA~~la~~GA~Vvi~d~~ 307 (530)
T PRK06484 290 IADRFAALGDRVAIIDSD 307 (530)
T ss_pred HHHHHHHCCCEEEEEECC
T ss_conf 999999887989999588
No 407
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.96 E-value=0.21 Score=26.56 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=48.1
Q ss_pred CEEEECC-CH--HHHHHHHHHHHCCCCEEEECCCHHHH---HHHHHC-CCC-EEECCCCCHHHHHHC------CHHHCCE
Q ss_conf 1799737-74--89999999984799089971998999---999976-992-999789998999848------9314679
Q gi|254780924|r 450 HVILVGY-GR--IGKVIVQNLKAAGIALLVIEDSEKKI---EELRSL-GID-VIYGNATITKILLMA------NIEKARS 515 (609)
Q Consensus 450 ~vii~G~-g~--~g~~~~~~L~~~~~~v~vid~~~~~~---~~~~~~-g~~-~~~gd~~~~~~l~~~------~i~~a~~ 515 (609)
.++|.|. |. +|+.+++.|.++|.+|++.+.|++.. +++.++ +.. .+..|.+|++-.++. ...+.|.
T Consensus 8 ~alVTGaa~g~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDi 87 (254)
T PRK07533 8 RGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPLLMPLDVREPGQLEAVFARIAEEWGRLDF 87 (254)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 89996888980899999999998799999982887789999999974598189991699999999999999998499778
Q ss_pred EEE
Q ss_conf 999
Q gi|254780924|r 516 LVV 518 (609)
Q Consensus 516 vi~ 518 (609)
+|-
T Consensus 88 lVn 90 (254)
T PRK07533 88 VLH 90 (254)
T ss_pred EEE
T ss_conf 974
No 408
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.96 E-value=0.22 Score=26.29 Aligned_cols=90 Identities=16% Similarity=0.323 Sum_probs=53.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC----CEEEEC-CCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECC
Q ss_conf 7817997377489999999984799----089971-998999999976-9929997899989998489314679999359
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI----ALLVIE-DSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSIS 521 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~----~v~vid-~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~ 521 (609)
+.+|.++|+|++|+.+++-+.+.+. ++.+.+ .|.++.+.+.++ +... .+|.+ ..++++|.++.++.
T Consensus 4 ~~kI~fIG~GnMg~Aii~gll~~~~~~~~~i~v~~~~~~~~~~~l~~~~~i~~----~~~~~----~~~~~~d~IilavK 75 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWK----QHVTSVDTIVLAMP 75 (245)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEE----CCCHH----HHHHHCCEEEEEEC
T ss_conf 99199987589999999999977999960599969999999999999719742----27779----99855999999989
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9689999999999958988089994
Q gi|254780924|r 522 TAFEAAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 522 ~~~~n~~~~~~~~~~~~~~~iia~~ 546 (609)
-.+. ..++...+....+..++..+
T Consensus 76 P~~~-~~vl~~i~~~~~~~~iISi~ 99 (245)
T PRK07634 76 PSAH-EELLAELSPLLSNQLVVTVA 99 (245)
T ss_pred CHHH-HHHHHHHHHHHCCCEEEEEE
T ss_conf 1749-99999987760698899981
No 409
>PRK08628 short chain dehydrogenase; Provisional
Probab=94.95 E-value=0.13 Score=27.95 Aligned_cols=73 Identities=26% Similarity=0.268 Sum_probs=48.4
Q ss_pred CCCCEE-EE-CCCHHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHHCCC--CEEECCCCCHHHHHHC------CHHHC
Q ss_conf 478179-97-377489999999984799089971998999---99997699--2999789998999848------93146
Q gi|254780924|r 447 LCDHVI-LV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKI---EELRSLGI--DVIYGNATITKILLMA------NIEKA 513 (609)
Q Consensus 447 ~~~~vi-i~-G~g~~g~~~~~~L~~~~~~v~vid~~~~~~---~~~~~~g~--~~~~gd~~~~~~l~~~------~i~~a 513 (609)
++++++ |- |.+-+|+.+++.|.++|..++++|.|++.. ++..+.+. ..+..|.+|++-++++ ...+.
T Consensus 5 l~gKvalVTG~s~GIG~a~a~~la~~Ga~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~v~~~~~~~g~i 84 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVVFGRSAPDDEFAEELRALQPRAEFVQVDLQDDAQCRDAVAQTVAKFGRI 84 (258)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 79998999277778999999999987998999808802399999999539978999952799999999999999982998
Q ss_pred CEEEEE
Q ss_conf 799993
Q gi|254780924|r 514 RSLVVS 519 (609)
Q Consensus 514 ~~vi~~ 519 (609)
|.+|-.
T Consensus 85 DiLVnn 90 (258)
T PRK08628 85 DGLVNN 90 (258)
T ss_pred CEEEEC
T ss_conf 899988
No 410
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.94 E-value=0.14 Score=27.73 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=41.8
Q ss_pred CEEEECCC---HHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHHC--CC--CEEECCCCCHHHHHHC
Q ss_conf 17997377---4899999999847990899719989---99999976--99--2999789998999848
Q gi|254780924|r 450 HVILVGYG---RIGKVIVQNLKAAGIALLVIEDSEK---KIEELRSL--GI--DVIYGNATITKILLMA 508 (609)
Q Consensus 450 ~vii~G~g---~~g~~~~~~L~~~~~~v~vid~~~~---~~~~~~~~--g~--~~~~gd~~~~~~l~~~ 508 (609)
.++|-|.+ -+|+.+++.|.++|.++++.+.+++ .+++..++ +. .++..|.+|++-.+++
T Consensus 8 ~~lVTGaag~rGIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 76 (256)
T PRK08594 8 TYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELAETLEQQESLVLPCDVTSDEEITAC 76 (256)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 899989999963999999999987999999748806699999999870799479999138999999999
No 411
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=94.94 E-value=0.023 Score=33.15 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=50.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEECCCHHHH----HHHHHCCCCEEECCCCCHHHHHHCCHHH
Q ss_conf 1799737748999999998479-----9089971998999----9999769929997899989998489314
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAG-----IALLVIEDSEKKI----EELRSLGIDVIYGNATITKILLMANIEK 512 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~-----~~v~vid~~~~~~----~~~~~~g~~~~~gd~~~~~~l~~~~i~~ 512 (609)
+|+|+|+|.+|..+|-.|...+ .+|.+||..+..- ..-...+.+++--.......|++.|+=+
T Consensus 1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~D~R~~Al~~~S~~~L~~lG~W~ 72 (445)
T TIGR01988 1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGFDNRVSALSAASIRLLEKLGVWD 72 (445)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCH
T ss_conf 968884738899999998418631247317996052114422112587655220101079999998679644
No 412
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.93 E-value=0.21 Score=26.55 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=48.9
Q ss_pred CCCCCCCEE-EECC-CHHHHHHHHHHHHCCCCEEEECCCH-----HHHHHHHHCCCC--EEECCCCCHHHHHHC-----C
Q ss_conf 213478179-9737-7489999999984799089971998-----999999976992--999789998999848-----9
Q gi|254780924|r 444 KTDLCDHVI-LVGY-GRIGKVIVQNLKAAGIALLVIEDSE-----KKIEELRSLGID--VIYGNATITKILLMA-----N 509 (609)
Q Consensus 444 ~~~~~~~vi-i~G~-g~~g~~~~~~L~~~~~~v~vid~~~-----~~~~~~~~~g~~--~~~gd~~~~~~l~~~-----~ 509 (609)
..++++++. |-|. +-+|+.+++.|.++|.+|++.|.++ +..+++++.|.+ .+.+|.+|++..++. .
T Consensus 4 ~~dL~GKvalVTGas~GIGraiA~~lA~~GA~Vvi~d~~~~~~~~~~~~ei~~~G~~~~~~~~Dvsd~~~v~~lv~~~~~ 83 (303)
T PRK07792 4 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDIASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATADG 83 (303)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 75689998999288668999999999986999999718972479999999984499389996676899999999999998
Q ss_pred HHHCCEEEEE
Q ss_conf 3146799993
Q gi|254780924|r 510 IEKARSLVVS 519 (609)
Q Consensus 510 i~~a~~vi~~ 519 (609)
..+.|.+|-.
T Consensus 84 ~G~iDiLVNN 93 (303)
T PRK07792 84 LGGLDIVVNN 93 (303)
T ss_pred HCCCCEEEEC
T ss_conf 3999699988
No 413
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.91 E-value=0.23 Score=26.21 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=69.8
Q ss_pred CCEEEECCC--HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----C---CCCEEECCCCCHHHHHHCCHHHCCEEEEE
Q ss_conf 817997377--48999999998479908997199899999997----6---99299978999899984893146799993
Q gi|254780924|r 449 DHVILVGYG--RIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----L---GIDVIYGNATITKILLMANIEKARSLVVS 519 (609)
Q Consensus 449 ~~vii~G~g--~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~---g~~~~~gd~~~~~~l~~~~i~~a~~vi~~ 519 (609)
++..=+|+| -++-..+ +....-.+..||.|+++++..++ . ++.++.||+ |+.|.+.. +.|.+.+.
T Consensus 36 ~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~~~~--~~daiFIG 109 (187)
T COG2242 36 DRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALPDLP--SPDAIFIG 109 (187)
T ss_pred CEEEEECCCCCHHHHHHH--HHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCC--HHHHCCCC--CCCEEEEC
T ss_conf 989995788668999999--7398855999925888999999999984999679995464--57636999--99999987
Q ss_pred C-CCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH----HHHHCCCCEEE
Q ss_conf 5-996899999999999589880899946989999----99976998787
Q gi|254780924|r 520 I-STAFEAAYITQEARNSNPSILIIALADSDSEVE----HLTRYGADTVV 564 (609)
Q Consensus 520 ~-~~~~~n~~~~~~~~~~~~~~~iia~~~~~~~~~----~l~~~Ga~~vi 564 (609)
= .+.+.-+..| ...+.|..++++-+-+.++.. .+++.|...++
T Consensus 110 Gg~~i~~ile~~--~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 110 GGGNIEEILEAA--WERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred CCCCHHHHHHHH--HHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEE
T ss_conf 987778999999--997186876999860088899999999972985699
No 414
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=94.90 E-value=0.016 Score=34.16 Aligned_cols=67 Identities=21% Similarity=0.358 Sum_probs=44.4
Q ss_pred CEEEECCCHHHH--HHHHHHHHCCCCEEEECCCHHHHHHHHHC----CCCEE--ECCCCCHHHHHHCCHHHCCEEEEECC
Q ss_conf 179973774899--99999984799089971998999999976----99299--97899989998489314679999359
Q gi|254780924|r 450 HVILVGYGRIGK--VIVQNLKAAGIALLVIEDSEKKIEELRSL----GIDVI--YGNATITKILLMANIEKARSLVVSIS 521 (609)
Q Consensus 450 ~vii~G~g~~g~--~~~~~L~~~~~~v~vid~~~~~~~~~~~~----g~~~~--~gd~~~~~~l~~~~i~~a~~vi~~~~ 521 (609)
||.|.|+|+.|+ .+++.|.++|..+.+.|.+++.-.+.... ....+ .|+-.+. ...+++|.||..-+
T Consensus 1 ~i~i~GlG~tG~G~a~a~~L~~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~d~vv~SPG 75 (476)
T TIGR01087 1 KILILGLGKTGRGVAVARFLKKKGAEVTVTDDDPEEELERSKGQLKLSEGVVLYTGGKDDL-----EDLNNADLVVLSPG 75 (476)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCCC-----CCCCCCEEEEECCC
T ss_conf 9789986751078999999997298799998452213431133124556413532675310-----12334207997898
No 415
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=94.89 E-value=0.054 Score=30.58 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=36.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 34781799737748999999998479908997199899999997
Q gi|254780924|r 446 DLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS 489 (609)
Q Consensus 446 ~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~ 489 (609)
....||+|+|.|-.|-.+|..|.++|++|+|+|.+++....++.
T Consensus 254 ~~~~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A~gASG 297 (660)
T PRK01747 254 KRNRDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASG 297 (660)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 78871899893899999999999789968999479875655666
No 416
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=94.89 E-value=0.18 Score=27.00 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCHHH-HHHHHHCCCCEEECCCCCHHHHHHC-C-HHHCCEEEEECCCHHHHHHHHH
Q ss_conf 37748999999998479908997199899-9999976992999789998999848-9-3146799993599689999999
Q gi|254780924|r 455 GYGRIGKVIVQNLKAAGIALLVIEDSEKK-IEELRSLGIDVIYGNATITKILLMA-N-IEKARSLVVSISTAFEAAYITQ 531 (609)
Q Consensus 455 G~g~~g~~~~~~L~~~~~~v~vid~~~~~-~~~~~~~g~~~~~gd~~~~~~l~~~-~-i~~a~~vi~~~~~~~~n~~~~~ 531 (609)
|.+|+=.++...+ -+|.++.++|--.++ |=. +..|+- +..++-. + -++|+.=|...+|++++..+-+
T Consensus 507 gs~r~itq~i~nl-~~g~pi~lvdgG~QkR~Ft--------~I~Dgi-eal~~ii~n~~~~~~g~I~NiGnp~n~~Si~~ 576 (660)
T PRK08125 507 GSSRAITQLILNL-VEGSPIKLIDGGAQKRCFT--------DIRDGI-EALFRIIENRGNRCDGQIINIGNPDNEASIRE 576 (660)
T ss_pred CCCCHHHHHHHHH-HCCCCCEEECCCCEEEEEE--------EHHHHH-HHHHHHHHCCCCCCCCEEEECCCCCCCEEHHH
T ss_conf 7754199999999-7699856854873058887--------667799-99999984945555660687589986523999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780924|r 532 EAR 534 (609)
Q Consensus 532 ~~~ 534 (609)
.++
T Consensus 577 la~ 579 (660)
T PRK08125 577 LAE 579 (660)
T ss_pred HHH
T ss_conf 999
No 417
>KOG0370 consensus
Probab=94.88 E-value=0.059 Score=30.31 Aligned_cols=171 Identities=13% Similarity=0.166 Sum_probs=107.7
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC--HHHH---------HHHHHHHHCCCCEEE
Q ss_conf 32100000011122210000122233332111222321347817997377--4899---------999999847990899
Q gi|254780924|r 408 RVTSSTEQYSHICVEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYG--RIGK---------VIVQNLKAAGIALLV 476 (609)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii~G~g--~~g~---------~~~~~L~~~~~~v~v 476 (609)
.+.+..++......+.+..+.+...+.. ..+.+-.-..+|+++.|.| |+|. ..+|.|++.|++..+
T Consensus 881 gi~P~VKqIDTvAaE~Pa~TNYLY~tyn---~~~hDv~F~~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTim 957 (1435)
T KOG0370 881 GIHPFVKQIDTVAAEFPAQTNYLYTTYN---ATEHDVDFNEHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIM 957 (1435)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEEEC---CCCCCCCCCCCCEEEECCCCEECCCCEEECHHHHHHHHHHHHCCCCEEE
T ss_conf 9870454221242237663336999705---7424653388865997243256356205513355479999970984699
Q ss_pred ECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHH----CCCCEEEEEECCH-HH
Q ss_conf 719989999999769929997899989998489314679999359968999999999995----8988089994698-99
Q gi|254780924|r 477 IEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNS----NPSILIIALADSD-SE 551 (609)
Q Consensus 477 id~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~----~~~~~iia~~~~~-~~ 551 (609)
+..|||.+..--+++.+.|+-..+-+.+++--++++...+|+.++..-.|..+...-|+. +....-|-+++|+ ..
T Consensus 958 vNyNPETVSTDyDecdrLYFeeis~E~vmDiYe~E~~~G~iis~GGQ~pnNiA~~L~r~~~kilGTsP~~ID~AEnR~kF 1037 (1435)
T KOG0370 958 VNYNPETVSTDYDECDRLYFEEISYERVMDIYELENSEGIIISVGGQLPNNIALKLHRNGVKILGTSPEMIDSAENRFKF 1037 (1435)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEECCCHHHHHHHHHHHHH
T ss_conf 95686543575677766767542366534355430677269983684862021375862886754885761114567789
Q ss_pred HHHHHHCCCCEEEC---HHHHHHHHHHHHHHHH
Q ss_conf 99999769987876---5899999999998742
Q gi|254780924|r 552 VEHLTRYGADTVVM---SAREIALGMLDRLNQV 581 (609)
Q Consensus 552 ~~~l~~~Ga~~vi~---p~~~~a~~~~~~l~~~ 581 (609)
...|.+.|+|.--- ...+-|...++.+..+
T Consensus 1038 S~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~VgYP 1070 (1435)
T KOG0370 1038 SRMLDSIGVDQPAWKELTSLEEAKKFAEKVGYP 1070 (1435)
T ss_pred HHHHHHCCCCCHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 998877278861023322688999999865996
No 418
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.88 E-value=0.17 Score=27.20 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=40.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEE--------CCCHHHHHHHHHCCCCEEE
Q ss_conf 3478179973774899999999847990-8997--------1998999999976992999
Q gi|254780924|r 446 DLCDHVILVGYGRIGKVIVQNLKAAGIA-LLVI--------EDSEKKIEELRSLGIDVIY 496 (609)
Q Consensus 446 ~~~~~vii~G~g~~g~~~~~~L~~~~~~-v~vi--------d~~~~~~~~~~~~g~~~~~ 496 (609)
+...+|+|+|+|..+--.++.-.+.|.+ |.++ -.+++-++.+.++|++..+
T Consensus 321 ~~GkkVvVIGGGNtAmD~ARTA~RlGA~~VtivyRRt~~eMpA~~~Ei~eA~eEGV~~~~ 380 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRE 380 (652)
T ss_pred CCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHHHHHHHCCCCEEE
T ss_conf 678852486688138999999987489758998337633199986777788867984697
No 419
>PRK08309 short chain dehydrogenase; Provisional
Probab=94.88 E-value=0.14 Score=27.80 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=67.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-----CCCEEECCCCCHHHHHHCC---HH---HCCEEEE
Q ss_conf 17997377489999999984799089971998999999976-----9929997899989998489---31---4679999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-----GIDVIYGNATITKILLMAN---IE---KARSLVV 518 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~~l~~~~---i~---~a~~vi~ 518 (609)
|.+|+|+.-+=..+.+.|-++|++|.++-.|+++.++.++. ....+.-|..|++.++++= ++ ..|.+|+
T Consensus 2 haLVIGGTGML~~vs~~L~~qg~~VsiiaR~~~kl~~~~~~~~~p~~i~~l~~DY~d~~~l~~~l~~ai~q~Gp~dl~Va 81 (182)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEEGFHVSIIARDEVKLENVKRESGTPESITCLPLDYHDDDAVKLAIKRTIEQNGPITLAVA 81 (182)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 16997241755999999973799999994487886536862379863257874648869999999999961898568999
Q ss_pred ECCCHHHH--HHHHHHHHHHCCCCEEE
Q ss_conf 35996899--99999999958988089
Q gi|254780924|r 519 SISTAFEA--AYITQEARNSNPSILII 543 (609)
Q Consensus 519 ~~~~~~~n--~~~~~~~~~~~~~~~ii 543 (609)
=+.++... ..++...........++
T Consensus 82 WiHssa~~al~~v~~~l~~~~~~~~l~ 108 (182)
T PRK08309 82 WIHSSAKDALSVVCRELDLSSETYRLF 108 (182)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 983572245999999985489981699
No 420
>KOG0069 consensus
Probab=94.87 E-value=0.14 Score=27.63 Aligned_cols=87 Identities=22% Similarity=0.291 Sum_probs=52.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 78179973774899999999847990899719989999999769929997899989998489314679999359968999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
...|-|+|+|++|+.+++.|...|..+.--..++.+-+...+.+-. +-+.++.+. ++|.++++.+..+...
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~----~~d~~~~~~-----~sD~ivv~~pLt~~T~ 232 (336)
T KOG0069 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE----FVDIEELLA-----NSDVIVVNCPLTKETR 232 (336)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCC----CCCHHHHHH-----HCCEEEEECCCCHHHH
T ss_conf 7779996274788999996353266255411357763668874354----367888873-----2887999268977888
Q ss_pred HHH--HHHHHHCCCCEEE
Q ss_conf 999--9999958988089
Q gi|254780924|r 528 YIT--QEARNSNPSILII 543 (609)
Q Consensus 528 ~~~--~~~~~~~~~~~ii 543 (609)
.++ ...-+..+...++
T Consensus 233 ~liNk~~~~~mk~g~vlV 250 (336)
T KOG0069 233 HLINKKFIEKMKDGAVLV 250 (336)
T ss_pred HHHHHHHHHHCCCCEEEE
T ss_conf 776099998647976999
No 421
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=94.87 E-value=0.11 Score=28.35 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=55.2
Q ss_pred ECCCHHHHHHHHHHHHCC-CCEEEECCCHHHHH----HHH----HCCCCEEECCCCCHHHHHHCCH-HHCCEEEE--EC-
Q ss_conf 737748999999998479-90899719989999----999----7699299978999899984893-14679999--35-
Q gi|254780924|r 454 VGYGRIGKVIVQNLKAAG-IALLVIEDSEKKIE----ELR----SLGIDVIYGNATITKILLMANI-EKARSLVV--SI- 520 (609)
Q Consensus 454 ~G~g~~g~~~~~~L~~~~-~~v~vid~~~~~~~----~~~----~~g~~~~~gd~~~~~~l~~~~i-~~a~~vi~--~~- 520 (609)
=|.|=+|+++++.|.++| ..++++|.++.... .+. ....+.+.||..|.+.++++=- .+.|.++= +.
T Consensus 5 GGaGFIGS~Lv~~Ll~~g~~~v~v~d~~~~~~~~~~~~l~~~~~~~~~~~~~~DI~D~~~l~~~~~~~~~D~V~HlAA~~ 84 (280)
T pfam02719 5 GGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIEQELREEYNDPKLRFFIGDVRDRERLERAMEEYGVDTVFHAAALK 84 (280)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHC
T ss_conf 48867999999999968998899990887427789999886267898389981168989999998754999999810311
Q ss_pred ------CCH----HHHH----HHHHHHHHHCCCCEEEEEE
Q ss_conf ------996----8999----9999999958988089994
Q gi|254780924|r 521 ------STA----FEAA----YITQEARNSNPSILIIALA 546 (609)
Q Consensus 521 ------~~~----~~n~----~~~~~~~~~~~~~~iia~~ 546 (609)
.|+ +.|. .+...+|+.+.+ +++-..
T Consensus 85 ~V~~s~~~P~~~~~~Nv~gT~nlLe~a~~~~vk-~~v~~S 123 (280)
T pfam02719 85 HVPLVEYNPMEAIKTNVLGTENVAEAAIENGVE-KFVLIS 123 (280)
T ss_pred CCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCCC-EEECCC
T ss_conf 653276699999988727779999888853962-455147
No 422
>PRK04965 nitric oxide reductase; Provisional
Probab=94.85 E-value=0.088 Score=29.09 Aligned_cols=129 Identities=15% Similarity=0.195 Sum_probs=72.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCC---------HHHH----HHHHHCCCCEEECCCCCH-----H---H-H
Q ss_conf 781799737748999999998479908997199---------8999----999976992999789998-----9---9-9
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS---------EKKI----EELRSLGIDVIYGNATIT-----K---I-L 505 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~---------~~~~----~~~~~~g~~~~~gd~~~~-----~---~-l 505 (609)
..|++|+|.|-+|-++|..|.+.|.+|.++|.. ++.. +.+++.|++++.+..... + + +
T Consensus 141 ~krvvVIGgG~IG~E~A~~L~~~G~~Vtvve~~~~ll~~~l~~~~~~~l~~~l~~~GV~~~~~~~v~~i~~~~~~~~v~l 220 (378)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTESGIRATL 220 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCEEEEEE
T ss_conf 97899989838899999999967988999766674422117899999999999978909996988999996599899998
Q ss_pred HHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCC----CC----EEECHHHHHHHHHH
Q ss_conf 848931467999935996899999999999589--880899946989999999769----98----78765899999999
Q gi|254780924|r 506 LMANIEKARSLVVSISTAFEAAYITQEARNSNP--SILIIALADSDSEVEHLTRYG----AD----TVVMSAREIALGML 575 (609)
Q Consensus 506 ~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~--~~~iia~~~~~~~~~~l~~~G----a~----~vi~p~~~~a~~~~ 575 (609)
..-..-++|.++.+++-. -|... +++.+- +.-|++--.-+.+....+.+| .+ --+.|-...|+.++
T Consensus 221 ~dG~~i~aD~Vv~a~Gv~-Pnt~l---a~~aGl~~~~GI~Vd~~l~TS~p~IyA~GDcAe~~g~~~~~v~p~~~~a~~lA 296 (378)
T PRK04965 221 DDGRSIEVDAVIAAAGLR-PNTAL---ARRAGLAVNRGICVDSYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSANALA 296 (378)
T ss_pred CCCCEEECCEEEECCCCC-CCHHH---HHHCCCCCCCCEEECCCCCCCCCCEEEEEEEEEECCEEEEHHHHHHHHHHHHH
T ss_conf 599799849999894775-48278---98669866998899999854999999987528989997502899999999999
Q ss_pred HHHHH
Q ss_conf 99874
Q gi|254780924|r 576 DRLNQ 580 (609)
Q Consensus 576 ~~l~~ 580 (609)
+.+..
T Consensus 297 ~~l~G 301 (378)
T PRK04965 297 KNLLG 301 (378)
T ss_pred HHHCC
T ss_conf 97079
No 423
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.85 E-value=0.23 Score=26.18 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=48.8
Q ss_pred CEEEECCC---HHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHHC-CCC-EEECCCCCHHHHHHC------CHHHCCE
Q ss_conf 17997377---489999999984799089971998999---999976-992-999789998999848------9314679
Q gi|254780924|r 450 HVILVGYG---RIGKVIVQNLKAAGIALLVIEDSEKKI---EELRSL-GID-VIYGNATITKILLMA------NIEKARS 515 (609)
Q Consensus 450 ~vii~G~g---~~g~~~~~~L~~~~~~v~vid~~~~~~---~~~~~~-g~~-~~~gd~~~~~~l~~~------~i~~a~~ 515 (609)
.++|-|.+ .+|+.+|+.|.++|.+|++.+.+++.. +++.++ |.. ++..|.+|++-.++. ...+.|.
T Consensus 9 ~alITGaa~~~GIG~aiA~~La~~GA~V~i~~~~e~~~~~~~~~~~~~g~~~~~~~Dvsd~~~v~~~v~~~~~~~G~iDi 88 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGDALGKRVKPLAESLGSDLVLPCDVEDIASVDAVFEALEKKWGKLDF 88 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 79997999985499999999998699999981866889999999996498189983799999999999999998399878
Q ss_pred EEE
Q ss_conf 999
Q gi|254780924|r 516 LVV 518 (609)
Q Consensus 516 vi~ 518 (609)
+|-
T Consensus 89 LVn 91 (271)
T PRK06505 89 VVH 91 (271)
T ss_pred EEE
T ss_conf 985
No 424
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.84 E-value=0.24 Score=26.09 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=17.2
Q ss_pred CCCEEEECCCHHHHH-HHHHHHHC----CCCEEEECC
Q ss_conf 781799737748999-99999847----990899719
Q gi|254780924|r 448 CDHVILVGYGRIGKV-IVQNLKAA----GIALLVIED 479 (609)
Q Consensus 448 ~~~vii~G~g~~g~~-~~~~L~~~----~~~v~vid~ 479 (609)
..+|+|.|=...|.. +|+.+.+. +.+++.+|.
T Consensus 161 ~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC 197 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNM 197 (469)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 9978998989826999999999748877999578767
No 425
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.83 E-value=0.046 Score=31.03 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=14.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHH
Q ss_conf 134781799737748999999998
Q gi|254780924|r 445 TDLCDHVILVGYGRIGKVIVQNLK 468 (609)
Q Consensus 445 ~~~~~~vii~G~g~~g~~~~~~L~ 468 (609)
.-..++||+| .|-....+.+.+-
T Consensus 243 ~i~ad~vV~A-aGaws~~l~~~lg 265 (416)
T PRK00711 243 VITADAYVVA-LGSYSTALLKPLG 265 (416)
T ss_pred EEEEEEEEEE-CCHHHHHHHHHCC
T ss_conf 5750169993-3743699999749
No 426
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=94.83 E-value=0.059 Score=30.29 Aligned_cols=127 Identities=13% Similarity=0.177 Sum_probs=79.6
Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHH
Q ss_conf 99737748999999998479908997199899999997699299978999899984893146799993599689999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQ 531 (609)
Q Consensus 452 ii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~ 531 (609)
.=|++...|.+.|+.|.++|+.+++++.||..+-.-.+....+++-+.+-+.+.+-..-++-|.++.+.+... .+..+.
T Consensus 10 qa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt-~Ln~~~ 88 (400)
T COG0458 10 QAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQT-ALNAAL 88 (400)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCC-HHHHHH
T ss_conf 6411143678999999866975999728872124780005302662473788999997537662632468741-346889
Q ss_pred HHHHHC--C--CCEEE-------EEECCHH-HHHHHHHCCCCEE--ECHHHHHHHHHHHHHH
Q ss_conf 999958--9--88089-------9946989-9999997699878--7658999999999987
Q gi|254780924|r 532 EARNSN--P--SILII-------ALADSDS-EVEHLTRYGADTV--VMSAREIALGMLDRLN 579 (609)
Q Consensus 532 ~~~~~~--~--~~~ii-------a~~~~~~-~~~~l~~~Ga~~v--i~p~~~~a~~~~~~l~ 579 (609)
..++.+ + +++++ -+++|++ ..+.+++.|.... +....+-+.+..+.+.
T Consensus 89 ~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P~~~~~~~~e~~~~~~~ig 150 (400)
T COG0458 89 ELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVPSRIAHSVEEADEIADEIG 150 (400)
T ss_pred HHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 98772645644977994587895564209999999998399988412356777765576369
No 427
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.83 E-value=0.088 Score=29.10 Aligned_cols=75 Identities=24% Similarity=0.403 Sum_probs=52.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCC---------HHHH----HHHHHCCCCEEECCCCCH-------HHHHH
Q ss_conf 781799737748999999998479908997199---------8999----999976992999789998-------99984
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS---------EKKI----EELRSLGIDVIYGNATIT-------KILLM 507 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~---------~~~~----~~~~~~g~~~~~gd~~~~-------~~l~~ 507 (609)
..|++|+|.|-+|-++|+.|.+.|.+|.++|.. ++.. +.++++|++++.+..... -.+..
T Consensus 137 ~k~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~il~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~l~~ 216 (427)
T TIGR03385 137 VDRVVIIGGGYIGLEMVEALRERGKNVTLIHRSDKILNKLFDEEMNQIVEEELEKHEIELRLNEEVDSIIGEERVGVITS 216 (427)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCEEEEEC
T ss_conf 98899999639999999999976998999984683365548999999999999975979997988999987887899946
Q ss_pred CCHHHCCEEEEECCC
Q ss_conf 893146799993599
Q gi|254780924|r 508 ANIEKARSLVVSIST 522 (609)
Q Consensus 508 ~~i~~a~~vi~~~~~ 522 (609)
-+.-++|.++.+++-
T Consensus 217 g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 217 GGVYQADMVILAIGV 231 (427)
T ss_pred CCEEECCEEEECCCC
T ss_conf 999972899988774
No 428
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.83 E-value=0.24 Score=26.13 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=52.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECC--CHHHH
Q ss_conf 8179973774899999999847990899719989999999769929997899989998489314679999359--96899
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIS--TAFEA 526 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~--~~~~n 526 (609)
..+-|+|+|++|+.+++.+...|.+|...|..... .+.+++. .+ +++ -+.++|.+....+ ++..+
T Consensus 146 ktlGIvG~G~IG~~va~~l~~fGm~V~~~d~~~~~----~~~~~~~-----~~---l~e-ll~~sDivslh~Plt~~T~~ 212 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAEVVYYSTSGKN----KNSEYER-----LS---LEE-LLKTSDIISIHAPLNEKTKN 212 (311)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCC----CCCCCEE-----CC---HHH-HHHHCCEEEEECCCCCCCCC
T ss_conf 88999844748999999999769989998984312----4578135-----78---999-98737801453357622234
Q ss_pred HHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999958988089994
Q gi|254780924|r 527 AYITQEARNSNPSILIIALA 546 (609)
Q Consensus 527 ~~~~~~~~~~~~~~~iia~~ 546 (609)
+.-....+..-++..+|-.+
T Consensus 213 li~~~~l~~Mk~~a~lIN~a 232 (311)
T PRK08410 213 LINYEELKLLKDGAILINVG 232 (311)
T ss_pred HHHHHHHHHCCCCCEEEEEC
T ss_conf 01289996304575599925
No 429
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=94.83 E-value=0.085 Score=29.22 Aligned_cols=96 Identities=19% Similarity=0.082 Sum_probs=62.7
Q ss_pred CCEEEECCCHHHHHHHHHHH-HCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEEC-----CC
Q ss_conf 81799737748999999998-4799089971998999999976992999789998999848931467999935-----99
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLK-AAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSI-----ST 522 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~-~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~-----~~ 522 (609)
.+|+=+|+|.= .+.+.|. +++.++..+|.|++.+.++.++|.++++||.. +-+..-.=+..|.||..- .|
T Consensus 15 srVLDlGCG~G--~ll~~L~~~k~v~~~GvEid~~~v~~a~~kg~~Vi~~D~d--~~l~~f~d~sFD~VIls~vLqhl~~ 90 (193)
T pfam07021 15 SRVLDLGCGDG--SLLYLLQEEKQVDGRGIELDAAGVAECVAKGLSVIQGDAD--KGLEHFPDKSFDYVILSQTLQATRN 90 (193)
T ss_pred CEEEEECCCCC--HHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCEECCCHH--HCHHHCCCCCCCEEEHHHHHHHHCC
T ss_conf 98998368898--9999998766987698338999999998647954507744--5974577678037869879987528
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 6899999999999589880899946989999
Q gi|254780924|r 523 AFEAAYITQEARNSNPSILIIALADSDSEVE 553 (609)
Q Consensus 523 ~~~n~~~~~~~~~~~~~~~iia~~~~~~~~~ 553 (609)
++.-+. ..+..+ + +.|+..-|-.|-+
T Consensus 91 P~~vL~---EmlRVg-k-~~IVSfPNf~hw~ 116 (193)
T pfam07021 91 PREVLD---ELLRIG-R-RAIVSFPNFGHWR 116 (193)
T ss_pred CHHHHH---HHHHHC-C-EEEEEECCHHHHH
T ss_conf 199999---985126-8-6999943614799
No 430
>pfam07991 IlvN Acetohydroxy acid isomeroreductase, catalytic domain. Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.
Probab=94.82 E-value=0.24 Score=26.06 Aligned_cols=90 Identities=21% Similarity=0.366 Sum_probs=63.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEC-CCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 817997377489999999984799089971-9989999999769929997899989998489314679999359968999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIE-DSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid-~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
..|-|+|||..|+.=|..|++.|.+|++=- .+..-.++++++|.++. +-+| -..++|.+..+++|....-
T Consensus 5 k~iaViGYGsQG~AhAlNLrDSG~~V~vglr~~s~S~~kA~~dGf~v~----~~~e-----A~~~aDiim~L~PD~~q~~ 75 (165)
T pfam07991 5 KKIAVIGYGSQGHAHALNLRDSGVNVIVGLRPGSKSWEKAKKDGFEVY----TVAE-----AVKKADVVMILLPDEVQAE 75 (165)
T ss_pred CEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCC----CHHH-----HHHHCCEEEEECCCHHHHH
T ss_conf 989999346164888723053499789997899867999997897004----8999-----9865789998379777899
Q ss_pred HHHHHHHHHCCCCEEEEEEC
Q ss_conf 99999999589880899946
Q gi|254780924|r 528 YITQEARNSNPSILIIALAD 547 (609)
Q Consensus 528 ~~~~~~~~~~~~~~iia~~~ 547 (609)
.--..++..-.+.+.+.-++
T Consensus 76 iy~~~I~p~lk~G~~L~FaH 95 (165)
T pfam07991 76 VYEKEIAPNLKEGAALAFAH 95 (165)
T ss_pred HHHHHHHHHCCCCCEEEECC
T ss_conf 99998986578997799715
No 431
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.82 E-value=0.24 Score=26.05 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=54.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECC--CHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECC--CHHH
Q ss_conf 179973774899999999847990899719--989999999769929997899989998489314679999359--9689
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIED--SEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIS--TAFE 525 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~--~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~--~~~~ 525 (609)
.+=|+|+|++|+.+++.++..|.++..-|. ++++. .+.|.+.. + +++. +.++|.+.+.++ ++..
T Consensus 140 tlGIiG~G~IG~~vA~~~~~fgm~Vi~yDP~~~~~~~---~~~gv~~~-----~---l~el-l~~sD~IslH~Plt~eT~ 207 (524)
T PRK13581 140 TLGVIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERA---AQLGVELV-----E---LDEL-LARADFITLHTPLTPETR 207 (524)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHH---HHCCCEEE-----E---HHHH-HHHCCEEEECCCCCHHHH
T ss_conf 8999776757899999998549747887776446679---87196686-----0---8997-310889999367861554
Q ss_pred HHHHHHHHHHHCCCCEEEEEE
Q ss_conf 999999999958988089994
Q gi|254780924|r 526 AAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 526 n~~~~~~~~~~~~~~~iia~~ 546 (609)
++.-....+..-+...+|-.+
T Consensus 208 ~li~~~~~~~MK~ga~lIN~a 228 (524)
T PRK13581 208 NLIGAEELAKMKPGVRIINCA 228 (524)
T ss_pred HHCCHHHHHHCCCCCEEEECC
T ss_conf 430799996068998699748
No 432
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=94.81 E-value=0.12 Score=28.24 Aligned_cols=14 Identities=0% Similarity=-0.251 Sum_probs=5.3
Q ss_pred HHHHHHHCCCCEEE
Q ss_conf 99999958988089
Q gi|254780924|r 530 TQEARNSNPSILII 543 (609)
Q Consensus 530 ~~~~~~~~~~~~ii 543 (609)
...++..+-+...+
T Consensus 223 ~~i~~~~g~~~~~i 236 (284)
T pfam04321 223 RAIFDEAGADGGRV 236 (284)
T ss_pred HHHHHHHCCCCCCE
T ss_conf 99999968887742
No 433
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=94.80 E-value=0.14 Score=27.81 Aligned_cols=90 Identities=27% Similarity=0.302 Sum_probs=54.2
Q ss_pred EECCCHHH-HHHHHHHHHCCCCEEEECCCHH--HHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEE-CCCHHHHHH
Q ss_conf 97377489-9999999847990899719989--9999997699299978999899984893146799993-599689999
Q gi|254780924|r 453 LVGYGRIG-KVIVQNLKAAGIALLVIEDSEK--KIEELRSLGIDVIYGNATITKILLMANIEKARSLVVS-ISTAFEAAY 528 (609)
Q Consensus 453 i~G~g~~g-~~~~~~L~~~~~~v~vid~~~~--~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~-~~~~~~n~~ 528 (609)
.+|-|-+| ..+|+.|.++|++|-.-|..+. ..+.+++.|++++.| .-+++-|+....+.++.||.. .--.+.|-.
T Consensus 4 FvGIGG~GMSglA~~L~~~G~~VsGSD~~~~~y~t~~L~~~Gi~I~~g-~h~~~n~~~~p~g~~~vVv~S~~Ai~~~NpE 82 (491)
T TIGR01082 4 FVGIGGIGMSGLAEILLNRGYKVSGSDIAENAYTTKRLEALGIKIYIG-EHSAENLDDLPTGAADVVVVSAAAIKEDNPE 82 (491)
T ss_pred EEECCHHCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCEECCC-CCCHHHHCCCCCCCCCEEEEEEECCCCCCHH
T ss_conf 896062034489999985789087720335631589998678766279-9677982036789743799864033788888
Q ss_pred HHHHHHHHCCCCEEEEEE
Q ss_conf 999999958988089994
Q gi|254780924|r 529 ITQEARNSNPSILIIALA 546 (609)
Q Consensus 529 ~~~~~~~~~~~~~iia~~ 546 (609)
+. .||+. +++|+-|.
T Consensus 83 i~-~A~~~--~IPv~~R~ 97 (491)
T TIGR01082 83 IV-EAKER--GIPVIRRA 97 (491)
T ss_pred HH-HHHHC--CCCEECHH
T ss_conf 99-99964--88813378
No 434
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=94.80 E-value=0.072 Score=29.70 Aligned_cols=99 Identities=15% Similarity=0.255 Sum_probs=59.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEE-CCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 817997377489999999984799089971998999999976992999-7899989998489314679999359968999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIY-GNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~-gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
++++|++-|+++.++.+.+++.|++++++-.|+|......+...++++ +..+.. ++.-+--
T Consensus 2 ~kvLIanrGeiA~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~------------------~~Yl~~~ 63 (109)
T pfam00289 2 KKVLVANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPAS------------------ESYLNIE 63 (109)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCC------------------CCCCCHH
T ss_conf 4899988879999999999986997999963344152256650576534799832------------------1113799
Q ss_pred HHHHHHHHHCCCCEEE----EEECCHHHHHHHHHCCCCEEECHH
Q ss_conf 9999999958988089----994698999999976998787658
Q gi|254780924|r 528 YITQEARNSNPSILII----ALADSDSEVEHLTRYGADTVVMSA 567 (609)
Q Consensus 528 ~~~~~~~~~~~~~~ii----a~~~~~~~~~~l~~~Ga~~vi~p~ 567 (609)
.+...+++.+-+ -+. --.+|.+..+.+.+.|+.. |-|.
T Consensus 64 ~Ii~ia~~~~~~-aihpGyGflsEn~~fa~~~~~~Gi~f-iGPs 105 (109)
T pfam00289 64 RILDIAEKEGAD-AIHPGYGFLSENAEFAEACEKAGITF-IGPS 105 (109)
T ss_pred HHHHHHHHHCCC-EEECCCCCCCCCHHHHHHHHHCCCEE-ECCC
T ss_conf 999999981889-68779762335999999999888989-9958
No 435
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.79 E-value=0.25 Score=26.01 Aligned_cols=70 Identities=16% Similarity=0.341 Sum_probs=51.9
Q ss_pred CEEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----CCCC--EEECCCCCHHHHHHC------CHHHCCEE
Q ss_conf 17997377-48999999998479908997199899999997----6992--999789998999848------93146799
Q gi|254780924|r 450 HVILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----LGID--VIYGNATITKILLMA------NIEKARSL 516 (609)
Q Consensus 450 ~vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~g~~--~~~gd~~~~~~l~~~------~i~~a~~v 516 (609)
.++|-|.+ -+|+.+|+.|.++|.+++++|.|++..++..+ .|.+ .+..|.+|++-.+++ ...+.|.+
T Consensus 8 valITGas~GIG~aiA~~la~~Ga~V~l~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDiL 87 (238)
T PRK07666 8 NALITGAGRGIGRAVAIALAKEGVNVGLLARSEENLKAVAKEVEAEGVKAVIATADVSDYEEVTTAIETLKNGLGSIDIL 87 (238)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 89991637789999999999879989999899999999999999559927999930799999999999999981998789
Q ss_pred EEE
Q ss_conf 993
Q gi|254780924|r 517 VVS 519 (609)
Q Consensus 517 i~~ 519 (609)
|-.
T Consensus 88 VNN 90 (238)
T PRK07666 88 INN 90 (238)
T ss_pred EEC
T ss_conf 984
No 436
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Probab=94.78 E-value=0.17 Score=27.22 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 7489999999984799089971998999999976-992999789998999848931467999935996899999999999
Q gi|254780924|r 457 GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARN 535 (609)
Q Consensus 457 g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~ 535 (609)
|...+.+++.|+++|.+|+-+++..|...-+++. .+.++ +... ++.+...+...|+
T Consensus 3 ~~~~~~l~~~l~~~~~~vv~~~~~~d~~~~~~~~~~i~av---------------------il~~--~~~~~~ll~~ir~ 59 (111)
T pfam03709 3 IAASRELAEALEATGREVVDATSTDDLLSLIETFTDIAAV---------------------VLSW--DDEARGLLDEIRR 59 (111)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEE---------------------EEEE--CHHHHHHHHHHHH
T ss_conf 0458999999997898899748789999999838787689---------------------9984--6068999999997
Q ss_pred HCCCCEEEEEECCHHHH----HHHHHCCCCEEECHHHHHHHHHHHHHHHH
Q ss_conf 58988089994698999----99997699878765899999999998742
Q gi|254780924|r 536 SNPSILIIALADSDSEV----EHLTRYGADTVVMSAREIALGMLDRLNQV 581 (609)
Q Consensus 536 ~~~~~~iia~~~~~~~~----~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~ 581 (609)
.+++.+|.+-+++.... +.+++ ++.++.-.+++..-+++++.+.
T Consensus 60 ~n~~lPvFl~~~~~~~~~vp~~~l~~--i~gfi~l~edt~~fia~~I~~a 107 (111)
T pfam03709 60 RNFDLPVFLLAETRTSEDVPLDVLRE--IDGFIELFEDTPEFIARQIEAA 107 (111)
T ss_pred HCCCCCEEEEECHHHHHCCCHHHHHH--HHHHHHHHCCCHHHHHHHHHHH
T ss_conf 47899989884412575099999998--8786736568989999999999
No 437
>PRK08263 short chain dehydrogenase; Provisional
Probab=94.76 E-value=0.11 Score=28.33 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=45.7
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-C--CCEEECCCCCHHHHHHC------CHHHCCEEEEE
Q ss_conf 7997377-489999999984799089971998999999976-9--92999789998999848------93146799993
Q gi|254780924|r 451 VILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-G--IDVIYGNATITKILLMA------NIEKARSLVVS 519 (609)
Q Consensus 451 vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g--~~~~~gd~~~~~~l~~~------~i~~a~~vi~~ 519 (609)
++|-|.+ -+|+.+++.|.++|.+|++.+.|++..+++.++ + ...+..|.+|++..+++ ...+.|.+|-.
T Consensus 6 ~lITGassGIG~a~A~~la~~G~~Vv~~~R~~~~l~~l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDiLVNN 84 (275)
T PRK08263 6 WFITGASRGFGREWTEAALERGDRVVATARDTATLADLAERYGDALLPLALDVTDRAAVFAAVEQAVKHFGRLDIVVNN 84 (275)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9994674399999999999879989999798999999999759967999964899999999999999984998789988
No 438
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=94.75 E-value=0.25 Score=25.94 Aligned_cols=106 Identities=21% Similarity=0.231 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC--HHHH-HHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HH
Q ss_conf 7999999999999999870888--6799-9999996274103855847899999999999999882541688999---84
Q gi|254780924|r 3 TIIWGFVLAFIFGAIANRCRLP--TLIG-YLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDL---IS 76 (609)
Q Consensus 3 ~l~~~l~~a~i~g~la~rl~lP--~i~~-~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l---~~ 76 (609)
.....++++...|+++..+++| -+.| -+++|++.+-.+..+--| ..+.+.|-..+--..|.++.++.+ ++
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P----~~l~~~~q~ilG~~ig~~~t~s~l~~l~~ 85 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLP----RGLFKAGQVILGIMIGASLTPSVLDTLKS 85 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC----HHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999999999999999863778999888999999997436645687----69999999999998731068889999997
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 151588998999999999999999996788689999
Q gi|254780924|r 77 VRGIALPGALIQIILGTALGALMGMVMGWSLGGSVV 112 (609)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~all 112 (609)
++.......+.....+...++....+-.+|..+|++
T Consensus 86 ~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~ 121 (352)
T COG3180 86 NWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFL 121 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 140899999999999999999999954899621357
No 439
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.75 E-value=0.23 Score=26.25 Aligned_cols=68 Identities=22% Similarity=0.405 Sum_probs=43.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHH
Q ss_conf 81799737748999999998479908997199899999997699299978999899984893146799993599689
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFE 525 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~ 525 (609)
..|-|+|||..|+.=|..|+..|.+|++=-..-...+.++++|.++..- .+ -+.+||.+...++|...
T Consensus 17 k~iaVIGYGsQG~AhAlNLrDSG~~V~vglr~g~s~~~A~~~Gf~v~~~----~e-----A~~~aDvi~~L~pD~~q 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSV----SE-----AVRTAQVVQMLLPDEQQ 84 (335)
T ss_pred CEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCEECCH----HH-----HHHHCCEEEEECCHHHH
T ss_conf 9799975670768988564763997799979985699999879931679----99-----99857978750885879
No 440
>PRK07776 consensus
Probab=94.75 E-value=0.25 Score=25.94 Aligned_cols=72 Identities=22% Similarity=0.238 Sum_probs=50.7
Q ss_pred CCCCEEE-EC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC----CCCEEECCCCCHHHHHHC------CHHHCC
Q ss_conf 4781799-73-77489999999984799089971998999999976----992999789998999848------931467
Q gi|254780924|r 447 LCDHVIL-VG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL----GIDVIYGNATITKILLMA------NIEKAR 514 (609)
Q Consensus 447 ~~~~vii-~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~----g~~~~~gd~~~~~~l~~~------~i~~a~ 514 (609)
+++++++ -| .+.+|+.+|+.|.++|.+|++.|.|++..++..++ ....+.+|.+|++..+++ ...+.|
T Consensus 6 L~gKv~lITG~~~GIG~aiA~~la~~Ga~V~i~~~~~~~l~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD 85 (252)
T PRK07776 6 LTGRTAIVTGASRGIGLAIAQALAAAGANVVITARKQEALDEAAAQLGAERALGVAGHAVDEEHAREAVDLTLERFGSVD 85 (252)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99998999477879999999999987998999979889999999984799579999742899999999999999849986
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780924|r 515 SLVV 518 (609)
Q Consensus 515 ~vi~ 518 (609)
.+|.
T Consensus 86 ilVn 89 (252)
T PRK07776 86 ILVN 89 (252)
T ss_pred EEEE
T ss_conf 9998
No 441
>KOG1430 consensus
Probab=94.74 E-value=0.15 Score=27.47 Aligned_cols=63 Identities=25% Similarity=0.337 Sum_probs=47.0
Q ss_pred CCCEEEEC-CCHHHHHHHHHHHHCC--CCEEEECCCHHH--H-HHH---HHCCCCEEECCCCCHHHHHHCCH
Q ss_conf 78179973-7748999999998479--908997199899--9-999---97699299978999899984893
Q gi|254780924|r 448 CDHVILVG-YGRIGKVIVQNLKAAG--IALLVIEDSEKK--I-EEL---RSLGIDVIYGNATITKILLMANI 510 (609)
Q Consensus 448 ~~~vii~G-~g~~g~~~~~~L~~~~--~~v~vid~~~~~--~-~~~---~~~g~~~~~gd~~~~~~l~~~~i 510 (609)
..+++|.| .|-.|+++++.|.+++ .++.++|..+.. . ++. +.....++.||..|...+.++--
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~ 75 (361)
T KOG1430 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQ 75 (361)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 777999898337899999999845666179995367755565145533467743687223000055665215
No 442
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=94.74 E-value=0.052 Score=30.69 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=62.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH--CCCCEE--ECCCCCHH--------------HHH------
Q ss_conf 799737748999999998479908997199899999997--699299--97899989--------------998------
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS--LGIDVI--YGNATITK--------------ILL------ 506 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~--~g~~~~--~gd~~~~~--------------~l~------ 506 (609)
++|+|.|=+|..+|-+|.++|++|.++|.+++.-..++. -|.-+- -.+...+. .++
T Consensus 1 ~~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~~AS~~AaGMLAP~aE~~~~~~~~f~L~~~S~~~yp~~~~~l~~~t 80 (357)
T TIGR02352 1 VLVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGGGASWAAAGMLAPVAEVEYAEDPLFDLALESLRLYPEWLEALKELT 80 (357)
T ss_pred CEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97845318789999999974993899965860456778866433243266746767478999999997599999987317
Q ss_pred --HCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf --48931467999935996899999999999589880899946989999999
Q gi|254780924|r 507 --MANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALADSDSEVEHLT 556 (609)
Q Consensus 507 --~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~~~~~~~~l~ 556 (609)
..+-++...++++.++||.+..-...--+.-.. .-....+.+....++
T Consensus 81 g~~~~y~~~G~l~vA~~~~d~~~l~~~~~~~~~~G--~~~~~l~~~~~r~~E 130 (357)
T TIGR02352 81 GLDTGYRQCGTLVVAFDEDDVEKLRQLADLQSATG--MELEWLSGRALRRLE 130 (357)
T ss_pred CCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHC--CEEEECCHHHHHHHC
T ss_conf 99512740525894078711688899999987528--604650779999844
No 443
>PRK06988 putative formyltransferase; Provisional
Probab=94.73 E-value=0.19 Score=26.81 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=46.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHH----------HHHHHHHCCCCEEEC-CCCCHHHHHHCCHHHCCEE
Q ss_conf 78179973774899999999847990899719989----------999999769929997-8999899984893146799
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEK----------KIEELRSLGIDVIYG-NATITKILLMANIEKARSL 516 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~----------~~~~~~~~g~~~~~g-d~~~~~~l~~~~i~~a~~v 516 (609)
+.+|+.+|...++....+.|.+.|++++.|=..++ .-+.+.+.|+++++- +..|+++++...--++|.+
T Consensus 2 ~~rivf~Gtp~fav~~L~~L~~~~~~v~~VvTqpD~p~~~~~~~~Vk~~A~~~~ipv~~p~~~~~~e~~~~l~~~~~Dl~ 81 (313)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAQVAAEHGIPVITPADPNDPELRAAVAAAAPDFI 81 (313)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCCEE
T ss_conf 86199979988999999999978996799989989976688998299999986995877898999999999985399999
Q ss_pred EEE
Q ss_conf 993
Q gi|254780924|r 517 VVS 519 (609)
Q Consensus 517 i~~ 519 (609)
+++
T Consensus 82 vv~ 84 (313)
T PRK06988 82 FSF 84 (313)
T ss_pred EEE
T ss_conf 995
No 444
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=94.73 E-value=0.26 Score=25.90 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=18.7
Q ss_pred CCCEEEECCCHHHHH-HHHHHHH----CCCCEEEECC
Q ss_conf 781799737748999-9999984----7990899719
Q gi|254780924|r 448 CDHVILVGYGRIGKV-IVQNLKA----AGIALLVIED 479 (609)
Q Consensus 448 ~~~vii~G~g~~g~~-~~~~L~~----~~~~v~vid~ 479 (609)
..+|+|.|=.-.|.. +|+.+.+ .+.+++.|+.
T Consensus 166 ~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc 202 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNC 202 (457)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 9958998899857899999999837988998387647
No 445
>pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.
Probab=94.73 E-value=0.26 Score=25.90 Aligned_cols=93 Identities=18% Similarity=0.125 Sum_probs=50.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHH
Q ss_conf 781799737748999999998479908997199899999997699299978999899984893146799993599-6899
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEA 526 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n 526 (609)
...+-|+|+|++|+.+++.+...|.++...|.....-..-...... .....+.+.-.+..+.+..+.+. +..+
T Consensus 137 ~~~~giiG~G~iG~~va~~~~~~g~~v~~~d~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~vi~~~~~~~~~~~ 210 (313)
T pfam00389 137 GKTLGVIGGGGIGGIGAAIAKALGMGVVAYDPYPNPERAEEGGVEV------LLLDLLLLDLKESDDLINLAPPTTMKTG 210 (313)
T ss_pred CCEEEEEEECCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCC------CCHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 9889999465436999999997698699995799867776405531------1266668774126889994799986557
Q ss_pred HHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999958988089994
Q gi|254780924|r 527 AYITQEARNSNPSILIIALA 546 (609)
Q Consensus 527 ~~~~~~~~~~~~~~~iia~~ 546 (609)
........+.-++..++..+
T Consensus 211 ~~~~~~~~~~~~~~~~i~~~ 230 (313)
T pfam00389 211 HIIINEARGMLKDAVAINNA 230 (313)
T ss_pred CCCHHHHHHCCCCCEEEEEC
T ss_conf 71168898456996289833
No 446
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=94.71 E-value=0.094 Score=28.91 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=50.2
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC------CHHHCCEEEEEC
Q ss_conf 79973-77489999999984799089971998999999976992999789998999848------931467999935
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA------NIEKARSLVVSI 520 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~------~i~~a~~vi~~~ 520 (609)
++|-| .+.+|+.+++.|.++|.+|+..|.|++...+ ......+..|.+|++-.+++ ...+.|.+|-+-
T Consensus 11 alITG~s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA 85 (253)
T PRK08220 11 VWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFEQLNE--QYPFATFVLDVADAAAVAQVCQRLLAETGPLDVLVNVA 85 (253)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHC--CCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 9995885689999999999879999999788778748--99779999737999999999999999739988899899
No 447
>PRK12744 short chain dehydrogenase; Provisional
Probab=94.71 E-value=0.26 Score=25.87 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=48.5
Q ss_pred CCCE-EEE-CCCHHHHHHHHHHHHCCCCEEEECCCHH----HHH----HHHHCCCC--EEECCCCCHHHHHHC------C
Q ss_conf 7817-997-3774899999999847990899719989----999----99976992--999789998999848------9
Q gi|254780924|r 448 CDHV-ILV-GYGRIGKVIVQNLKAAGIALLVIEDSEK----KIE----ELRSLGID--VIYGNATITKILLMA------N 509 (609)
Q Consensus 448 ~~~v-ii~-G~g~~g~~~~~~L~~~~~~v~vid~~~~----~~~----~~~~~g~~--~~~gd~~~~~~l~~~------~ 509 (609)
++++ +|- |.+.+|+.+|+.|.++|.+++++|.|.+ ..+ .+++.|.+ .+.+|.+|++-.++. .
T Consensus 7 ~gKvalVTGgs~GIG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 86 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAATKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA 86 (257)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99989992887589999999999879989999378743689999999999973992899976889999999999999998
Q ss_pred HHHCCEEEEEC
Q ss_conf 31467999935
Q gi|254780924|r 510 IEKARSLVVSI 520 (609)
Q Consensus 510 i~~a~~vi~~~ 520 (609)
..+.|.+|-.-
T Consensus 87 ~G~iDilVnnA 97 (257)
T PRK12744 87 FGRPDIAINTV 97 (257)
T ss_pred CCCCCEEEECC
T ss_conf 09988999766
No 448
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=94.71 E-value=0.19 Score=26.79 Aligned_cols=69 Identities=25% Similarity=0.151 Sum_probs=47.3
Q ss_pred CEEEECCC---HHHHHHHHHHHHCCCCEEEECC------CHHHHHHHHHCCCC--EEECCCCCHHHHHHC------CHHH
Q ss_conf 17997377---4899999999847990899719------98999999976992--999789998999848------9314
Q gi|254780924|r 450 HVILVGYG---RIGKVIVQNLKAAGIALLVIED------SEKKIEELRSLGID--VIYGNATITKILLMA------NIEK 512 (609)
Q Consensus 450 ~vii~G~g---~~g~~~~~~L~~~~~~v~vid~------~~~~~~~~~~~g~~--~~~gd~~~~~~l~~~------~i~~ 512 (609)
.++|-|.+ .+|+.+++.|.++|.+|++.+. .++.++++.+.+-+ .+..|.+|++-.++. ...+
T Consensus 9 ~alVTGaag~~GiG~aia~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 88 (259)
T PRK07370 9 KALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCNVQDDAQIEEVFETIKQKWGQ 88 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 89997989985799999999998699999994787013589999999841286489991289999999999999998589
Q ss_pred CCEEEE
Q ss_conf 679999
Q gi|254780924|r 513 ARSLVV 518 (609)
Q Consensus 513 a~~vi~ 518 (609)
.|.+|-
T Consensus 89 iDilVn 94 (259)
T PRK07370 89 LDILVH 94 (259)
T ss_pred CCEEEE
T ss_conf 877986
No 449
>PRK06196 oxidoreductase; Provisional
Probab=94.70 E-value=0.26 Score=25.85 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=49.5
Q ss_pred CCCCCCCCEEEECC--CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC--CCCEEECCCCCHHHHHHC
Q ss_conf 32134781799737--7489999999984799089971998999999976--992999789998999848
Q gi|254780924|r 443 QKTDLCDHVILVGY--GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL--GIDVIYGNATITKILLMA 508 (609)
Q Consensus 443 ~~~~~~~~vii~G~--g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~--g~~~~~gd~~~~~~l~~~ 508 (609)
...|+++.++|+=+ .-+|+..|+.|.++|..|++...|+++.+++.++ +.+++..|-+|.+..++.
T Consensus 20 ~~~dL~GK~~vITGa~sGIG~~tA~~La~~Ga~Vil~~R~~~k~~~a~~~i~~~~~~~lDLs~~~sVr~~ 89 (316)
T PRK06196 20 AGLDLSGKTAIVTGGYSGLGLETTRALAQAGAHVVVPARRPDAAREALAGIDGVEVVALDLADLASVRAF 89 (316)
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEECCCCCHHHHHHH
T ss_conf 2879999989991799679999999999789989999499999999998741785798368899999999
No 450
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.69 E-value=0.26 Score=25.84 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=65.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECC-----------CHHHHHHHH---HCCCCEE------ECC---CCCHHHH
Q ss_conf 8179973774899999999847990899719-----------989999999---7699299------978---9998999
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIED-----------SEKKIEELR---SLGIDVI------YGN---ATITKIL 505 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~~~v~vid~-----------~~~~~~~~~---~~g~~~~------~gd---~~~~~~l 505 (609)
..++|=|+|.+|+..++.|.+.|.+++.+.+ |.+.++.+. +..-..+ +.+ .++.+.|
T Consensus 39 ~~vaIQGfGnVG~~aA~~l~e~GakvVaVsD~~G~i~~~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW 118 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCEECCCCCHH
T ss_conf 99999897799999999999779979999857850887999988999999999974687102444138985663897513
Q ss_pred HHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHCCC
Q ss_conf 848931467999935996899999999999589880899946----9899999997699
Q gi|254780924|r 506 LMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALAD----SDSEVEHLTRYGA 560 (609)
Q Consensus 506 ~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~----~~~~~~~l~~~Ga 560 (609)
-.++|.++-+--..+.|...+...+.. ++++|+-.- +++-.+.|++-|+
T Consensus 119 ----~~~cDIliPaA~en~I~~~nA~~i~a~--~ck~IvEgANgP~T~eAd~iL~~kGI 171 (254)
T cd05313 119 ----EVPCDIAFPCATQNEVDAEDAKLLVKN--GCKYVAEGANMPCTAEAIEVFRQAGV 171 (254)
T ss_pred ----HCCCCEEEECCCCCCCCHHHHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHCCC
T ss_conf ----304769974354667899999999967--98299865889998789999998898
No 451
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=94.68 E-value=0.26 Score=25.82 Aligned_cols=92 Identities=12% Similarity=0.261 Sum_probs=48.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC---CCCEE-EECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH
Q ss_conf 78179973774899999999847---99089-971998999999976992999789998999848931467999935996
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAA---GIALL-VIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA 523 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~---~~~v~-vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~ 523 (609)
.++++|+|.|+.++.+++.+.++ |++++ .+|++++.-. ...+.+ +.|+..| ..+-..-+++|.++++.+..
T Consensus 128 ~rrvLIIG~g~~~~~l~~~l~~~~~~G~~vvG~vdd~~~~~~--~~~~~p-vlg~~~~--l~~~i~~~~ideViia~~~~ 202 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDART--GVRGVP-VLGKLDD--LEELIREGEVDEVYIALPLA 202 (451)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC--CCCCCC-CCCCHHH--HHHHHHHCCCCEEEEECCCC
T ss_conf 754999968689999999997194368489999838854444--457997-3698999--99999967998899954835
Q ss_pred --HHHHHHHHHHHHHCCCCEEEE
Q ss_conf --899999999999589880899
Q gi|254780924|r 524 --FEAAYITQEARNSNPSILIIA 544 (609)
Q Consensus 524 --~~n~~~~~~~~~~~~~~~iia 544 (609)
+....+...+++.+.+.+++.
T Consensus 203 ~~~~~~~li~~~~~~~v~v~~~p 225 (451)
T TIGR03023 203 AEKRILELLDALEDLTVDVRLVP 225 (451)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 56899999999864598799946
No 452
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.64 E-value=0.17 Score=27.13 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=49.5
Q ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEE-CCCHHHHHHHH----HCCC--CEEECCCCCHHHHHHC--CH----HHCCE
Q ss_conf 1799737-748999999998479908997-19989999999----7699--2999789998999848--93----14679
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAAGIALLVI-EDSEKKIEELR----SLGI--DVIYGNATITKILLMA--NI----EKARS 515 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~~~~v~vi-d~~~~~~~~~~----~~g~--~~~~gd~~~~~~l~~~--~i----~~a~~ 515 (609)
.++|.|. +.+|+.+++.|.++|.+|++. +.|++..++.. +.+. ..+..|.+|++..++. .+ .+.|.
T Consensus 7 ~vlITGgs~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~ 86 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDKNEEAANELLEEIKEVGGDAIAVKADVSSEDDVENLVEQIVEKFGKIDI 86 (247)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 89993784589999999999879989998179989999999999963990899983589999999999999998099849
Q ss_pred EEEEC
Q ss_conf 99935
Q gi|254780924|r 516 LVVSI 520 (609)
Q Consensus 516 vi~~~ 520 (609)
+|...
T Consensus 87 lVnnA 91 (247)
T PRK05565 87 LVNNA 91 (247)
T ss_pred EEECC
T ss_conf 99899
No 453
>PRK06914 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.17 Score=27.10 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=48.6
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC--------CCCEEECCCCCHHHHHHCC-----HHHCCEE
Q ss_conf 7997377-489999999984799089971998999999976--------9929997899989998489-----3146799
Q gi|254780924|r 451 VILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL--------GIDVIYGNATITKILLMAN-----IEKARSL 516 (609)
Q Consensus 451 vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~--------g~~~~~gd~~~~~~l~~~~-----i~~a~~v 516 (609)
++|-|.+ -+|+.+|+.|.++|+.|+..+.|++..+++.++ ...++..|.+|++..+... ..+.|.+
T Consensus 6 alITGassGIG~a~A~~la~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~g~iDvL 85 (280)
T PRK06914 6 AIITGASSGFGLLTTLELAKKDYLVIATMRNLEKQENLISQAAQLNLSQNIKVQQLDVTDQNSIHNFQLFLKEYGRIDLL 85 (280)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99907344999999999998799899998988999999999996499976699968899999999999999982998789
Q ss_pred EEE
Q ss_conf 993
Q gi|254780924|r 517 VVS 519 (609)
Q Consensus 517 i~~ 519 (609)
|-.
T Consensus 86 VNN 88 (280)
T PRK06914 86 VNN 88 (280)
T ss_pred EEC
T ss_conf 978
No 454
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=94.63 E-value=0.27 Score=25.75 Aligned_cols=109 Identities=7% Similarity=0.111 Sum_probs=56.8
Q ss_pred CCEEEECCCHHHHHHHHH-----CCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 908997199899999997-----699299978999899984893146799993599-68999999999995898808999
Q gi|254780924|r 472 IALLVIEDSEKKIEELRS-----LGIDVIYGNATITKILLMANIEKARSLVVSIST-AFEAAYITQEARNSNPSILIIAL 545 (609)
Q Consensus 472 ~~v~vid~~~~~~~~~~~-----~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~-~~~n~~~~~~~~~~~~~~~iia~ 545 (609)
..|.++|+++-..+-++. .+..++..-.+..+.++...-.+.|.++.-.+= +......+...|+.+|+.++++-
T Consensus 4 ~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~p~~~ilvl 83 (210)
T PRK09935 4 ASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQETVKVLFL 83 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 88999859699999999999629892899998999999999974799999988999998864056789873899708997
Q ss_pred ECC--HHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHH
Q ss_conf 469--899999997699878765899999999998742
Q gi|254780924|r 546 ADS--DSEVEHLTRYGADTVVMSAREIALGMLDRLNQV 581 (609)
Q Consensus 546 ~~~--~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~ 581 (609)
+.+ +.+.....++||+..+.-.. ...++.+.+...
T Consensus 84 s~~~~~~~~~~a~~~Ga~g~l~K~~-~~~~l~~ai~~v 120 (210)
T PRK09935 84 SSKSECFYAGRAIRAGANGFVSKRK-DLNDIYNAVQMI 120 (210)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHH
T ss_conf 1767299999999668776886789-999999999999
No 455
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=94.61 E-value=0.27 Score=25.71 Aligned_cols=13 Identities=0% Similarity=-0.235 Sum_probs=4.5
Q ss_pred EEEECCCHHHHHH
Q ss_conf 9993599689999
Q gi|254780924|r 516 LVVSISTAFEAAY 528 (609)
Q Consensus 516 vi~~~~~~~~n~~ 528 (609)
.-+..++...+..
T Consensus 256 yNig~~~~~s~~e 268 (352)
T PRK10084 256 YNIGGHNEKKNLD 268 (352)
T ss_pred EEECCCCCCCHHH
T ss_conf 9989999763899
No 456
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=94.59 E-value=0.077 Score=29.52 Aligned_cols=88 Identities=16% Similarity=0.263 Sum_probs=57.0
Q ss_pred CCCCCCCCCEEEECCCHHHHHHH--HHHHHCCCCEE-EECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEE
Q ss_conf 23213478179973774899999--99984799089-9719989999999769929997899989998489314679999
Q gi|254780924|r 442 IQKTDLCDHVILVGYGRIGKVIV--QNLKAAGIALL-VIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVV 518 (609)
Q Consensus 442 ~~~~~~~~~vii~G~g~~g~~~~--~~L~~~~~~v~-vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~ 518 (609)
....+...+++++|.|+.|+.++ +..+++|.+++ +.|.||+.+-+-- .|.++..-|-. +++.++. +.+..|+
T Consensus 78 iLG~~~~~~v~lvGaGnLG~AL~~y~gf~~~gf~Iva~FD~dp~kiG~~i-~gi~V~~i~~L-~~~i~~~---~i~iaIi 152 (211)
T PRK05472 78 ILGLDKTTNVALVGAGNLGRALLNYNGFKKRGFKIVAAFDVDPEKVGTKI-GGIPVYHIDEL-EEVIKEN---DIEIAIL 152 (211)
T ss_pred HHCCCCCCEEEEECCCHHHHHHHHCCCHHHCCCEEEEEECCCHHHCCCEE-CCEEEECHHHH-HHHHHHH---CCCEEEE
T ss_conf 96899975089988877999998487623189789999748978859883-88387349999-9999981---9938999
Q ss_pred ECCCHHHHHHHHHHHH
Q ss_conf 3599689999999999
Q gi|254780924|r 519 SISTAFEAAYITQEAR 534 (609)
Q Consensus 519 ~~~~~~~n~~~~~~~~ 534 (609)
|++.+.....+-+.+.
T Consensus 153 aVP~~~AQ~vad~Lv~ 168 (211)
T PRK05472 153 TVPAEAAQEVADRLVE 168 (211)
T ss_pred ECCHHHHHHHHHHHHH
T ss_conf 5576889999999998
No 457
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.59 E-value=0.28 Score=25.67 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=65.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHC--------CCC-EEECCCCCHHHHHHCCHHHCCEEEEE
Q ss_conf 7997377489999999984799--089971998999999976--------992-99978999899984893146799993
Q gi|254780924|r 451 VILVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSL--------GID-VIYGNATITKILLMANIEKARSLVVS 519 (609)
Q Consensus 451 vii~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~--------g~~-~~~gd~~~~~~l~~~~i~~a~~vi~~ 519 (609)
|-|+|.|.+|..+|-.|..++. +++++|.|+++.+.-..+ +.+ ...+.. |. ..+.++|.+|.+
T Consensus 2 I~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~~~a~g~a~Dl~h~~~~~~~~~~~~~~~-~y-----~~~~~aDiVVit 75 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG-DY-----DDCADADIIVIT 75 (307)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCC-CH-----HHHCCCCEEEEC
T ss_conf 899996989999999998569988799992889823799998761203589986586679-98-----994699999986
Q ss_pred CCC-----------H--HHHHHH----HHHHHHHCCCCEEEEEECCHHHHH-----HHHHCCCCEEECH
Q ss_conf 599-----------6--899999----999999589880899946989999-----9997699878765
Q gi|254780924|r 520 IST-----------A--FEAAYI----TQEARNSNPSILIIALADSDSEVE-----HLTRYGADTVVMS 566 (609)
Q Consensus 520 ~~~-----------~--~~n~~~----~~~~~~~~~~~~iia~~~~~~~~~-----~l~~~Ga~~vi~p 566 (609)
-+. | +.|..+ +...++++|+.. +..+.||-+.- +.....-++||-.
T Consensus 76 aG~~~kpg~t~~R~dL~~~N~~I~~~i~~~i~~~~p~~i-~ivvsNPvDvmt~~~~k~sg~p~~rViG~ 143 (307)
T cd05290 76 AGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAV-IILITNPLDIAVYIAATEFDYPANKVIGT 143 (307)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE-EEECCCCHHHHHHHHHHHHCCCCCCEEEC
T ss_conf 777658999835888888578999999999861399749-99847938899999999848993578720
No 458
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.58 E-value=0.28 Score=25.66 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=63.1
Q ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHH---------------------HHH----HHHH--CCC-
Q ss_conf 2321347817997377489999999984799-0899719989---------------------999----9997--699-
Q gi|254780924|r 442 IQKTDLCDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEK---------------------KIE----ELRS--LGI- 492 (609)
Q Consensus 442 ~~~~~~~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~---------------------~~~----~~~~--~g~- 492 (609)
.+..=.+.||+|+|.|-.|..++..|...|. ++.++|.|.- ++. ++++ .++
T Consensus 18 GQ~kL~~s~VlIVGaGGLGs~~a~~La~aGVG~l~ivD~D~Ve~SNL~RQ~L~~~~Dig~~k~Ka~aA~~~L~~iNp~v~ 97 (337)
T PRK12475 18 GQRKIREKHVLIIGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQYKPKAIAAAEHLRKINSEVE 97 (337)
T ss_pred HHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99998639699997777789999999982898699984998314467453002221215574889999999984499974
Q ss_pred -CEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf -299978999899984893146799993599689999999999958
Q gi|254780924|r 493 -DVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSN 537 (609)
Q Consensus 493 -~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~ 537 (609)
+.+..+.+.+ .+++ -++++|.++=++||.++-..+-..+.+.+
T Consensus 98 I~~~~~~l~~~-n~~~-li~~~DlViD~tDNf~tR~liNd~c~~~~ 141 (337)
T PRK12475 98 IVPVVTDVTVE-EMEE-LIKEVDLIIDATDNFDTRLLINDISQKYN 141 (337)
T ss_pred EEEEHHCCCHH-HHHH-HHHHCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 47513119979-9999-98618899988889999999999999969
No 459
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.57 E-value=0.28 Score=25.65 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=46.5
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC--CHHHCCEEEEE
Q ss_conf 79973-77489999999984799089971998999999976992999789998999848--93146799993
Q gi|254780924|r 451 VILVG-YGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA--NIEKARSLVVS 519 (609)
Q Consensus 451 vii~G-~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~--~i~~a~~vi~~ 519 (609)
++|-| .+-+|+.+++.|.++|.+|+.+|.+++.. .....+.+..|.+|+++ +++ ...+.|.+|-.
T Consensus 8 alVTGas~GIG~aia~~~a~~Ga~V~~~d~~~~~~---~~~~~~~~~~Dv~~~~v-~~~~~~~g~iDiLvNn 75 (237)
T PRK06550 8 VLVTGAASGIGLAQARAFLEQGAHVYGVDKSDKPD---LSGNFHFIQLDLSSDKL-EPLFKVVPSVDILCNT 75 (237)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH---CCCCEEEEECCCCHHHH-HHHHHHCCCCCEEEEC
T ss_conf 99937477999999999998799999970861243---06973899863888999-9999975999799989
No 460
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.56 E-value=0.28 Score=25.63 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=48.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC---CCEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH
Q ss_conf 81799737748999999998479---9089971998999999976-992999789998999848931467999935996
Q gi|254780924|r 449 DHVILVGYGRIGKVIVQNLKAAG---IALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTA 523 (609)
Q Consensus 449 ~~vii~G~g~~g~~~~~~L~~~~---~~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~ 523 (609)
.+|-++|+|.+|+.+++-|.+.+ .++.+.|.|+++.+++.++ +.++.. | +.+. ++++|.++.++--.
T Consensus 3 ~kI~~IG~G~Mg~Aii~gl~~~~~~~~~i~v~~r~~~~~~~l~~~~~v~~~~-~--~~~~-----~~~~diIiLaVKP~ 73 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAAT-D--NQEA-----AQEADVVVLAVKPQ 73 (267)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCEEEC-C--HHHH-----HHCCCEEEEEECHH
T ss_conf 8799986689999999999977989452899779999999999973967857-8--6988-----72199999972878
No 461
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=94.55 E-value=0.28 Score=25.61 Aligned_cols=88 Identities=20% Similarity=0.362 Sum_probs=55.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCC----CCEEEECCCHHHHHHHH-HCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHH
Q ss_conf 1799737748999999998479----90899719989999999-769929997899989998489314679999359968
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAG----IALLVIEDSEKKIEELR-SLGIDVIYGNATITKILLMANIEKARSLVVSISTAF 524 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~----~~v~vid~~~~~~~~~~-~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~ 524 (609)
++-++|+|.+|+.+++-|.+.+ .++.+.+.++++.+++. +.|... .+|.+. -.+++|.++++.-- .
T Consensus 3 ~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~----~~~~advv~LavKP-q 73 (266)
T COG0345 3 KIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQE----AVEEADVVFLAVKP-Q 73 (266)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCC----CCCHHH----HHHHCCEEEEEECH-H
T ss_conf 58998468899999999996689980238983799999999999849855----686798----87408989998482-7
Q ss_pred HHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9999999999958988089994
Q gi|254780924|r 525 EAAYITQEARNSNPSILIIALA 546 (609)
Q Consensus 525 ~n~~~~~~~~~~~~~~~iia~~ 546 (609)
.-...+...+...++..+|..+
T Consensus 74 ~~~~vl~~l~~~~~~~lvISia 95 (266)
T COG0345 74 DLEEVLSKLKPLTKDKLVISIA 95 (266)
T ss_pred HHHHHHHHHHCCCCCCEEEEEE
T ss_conf 6899999732356888799970
No 462
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=94.52 E-value=0.066 Score=29.96 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=10.1
Q ss_pred CCCEEEECCCHHHHHHHHHH
Q ss_conf 78179973774899999999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNL 467 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L 467 (609)
.++||+|. |..+..+...+
T Consensus 191 a~~VV~a~-G~~s~~l~~~~ 209 (309)
T pfam01266 191 ADKVVNAA-GAWSDELLRLL 209 (309)
T ss_pred CCEEEECC-CHHHHHHHHHC
T ss_conf 89999977-74268888863
No 463
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=94.51 E-value=0.29 Score=25.56 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=59.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHH------------------HHHHHHHC-CCCEEECCCCCHHHHHHCCH
Q ss_conf 179973774899999999847990899719989------------------99999976-99299978999899984893
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEK------------------KIEELRSL-GIDVIYGNATITKILLMANI 510 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~------------------~~~~~~~~-g~~~~~gd~~~~~~l~~~~i 510 (609)
+|.|=|+|.+|+.+++.|.+.|.+++++|+++. +..+..+. +.+.+.+ ++.--
T Consensus 209 rVaVQG~GNVg~~aa~~l~~~GAkvv~~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~--------~e~~~ 280 (411)
T COG0334 209 RVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN--------EELLE 280 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCEECCC--------CCCCC
T ss_conf 8999776289999999999749979999767884416777788999877664445876348667265--------13004
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHCCC
Q ss_conf 1467999935996899999999999589880899946----9899999997699
Q gi|254780924|r 511 EKARSLVVSISTAFEAAYITQEARNSNPSILIIALAD----SDSEVEHLTRYGA 560 (609)
Q Consensus 511 ~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~----~~~~~~~l~~~Ga 560 (609)
-++|.++-|- -.|......++++ +.++|+-.- +++..+.+.+.|+
T Consensus 281 ~~cDIl~PcA---~~n~I~~~na~~l--~ak~V~EgAN~P~t~eA~~i~~erGI 329 (411)
T COG0334 281 VDCDILIPCA---LENVITEDNADQL--KAKIVVEGANGPTTPEADEILLERGI 329 (411)
T ss_pred CCCCEECCCC---CCCCCCHHHHHHH--HCCEEEECCCCCCCHHHHHHHHHCCC
T ss_conf 5775771044---4362563218875--00279852679998778999997898
No 464
>PRK08948 consensus
Probab=94.51 E-value=0.037 Score=31.70 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=6.3
Q ss_pred EEECCCHHHHHHHHH
Q ss_conf 997377489999999
Q gi|254780924|r 452 ILVGYGRIGKVIVQN 466 (609)
Q Consensus 452 ii~G~g~~g~~~~~~ 466 (609)
+++|+.-.-..+-+.
T Consensus 157 llVgaDG~~S~vR~~ 171 (392)
T PRK08948 157 LLVAADGSHSALAQA 171 (392)
T ss_pred EEEEECCCCHHHHHH
T ss_conf 899918997377774
No 465
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.50 E-value=0.092 Score=28.96 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=68.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC-CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH--
Q ss_conf 7817997377489999999984799-089971998999999976-992999789998999848931467999935996--
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL-GIDVIYGNATITKILLMANIEKARSLVVSISTA-- 523 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~-g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-- 523 (609)
..+++|+|.|-.++.++-.|.+.|. ++.+++.|+++.+++.++ +...-..+....+-++ ..+.++|.+|-+|+-.
T Consensus 127 ~~~vlilGaGGaa~ai~~al~~~g~~~i~I~nR~~~r~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~d~iINaTp~Gm~ 205 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTLFDVDPARAQALADELNARFPAARVTAGSDLA-AALAAADGLVHATPTGMA 205 (284)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECHHHH-HHHHHCCEEEECCCCCCC
T ss_conf 5718996566168999999997699989999798899999999998657986376416767-654213826657898877
Q ss_pred -HHHHHHHHHHHHHCCCCEEEEEECCH---HHHHHHHHCCCCEEECHHHHHHHHHHH
Q ss_conf -89999999999958988089994698---999999976998787658999999999
Q gi|254780924|r 524 -FEAAYITQEARNSNPSILIIALADSD---SEVEHLTRYGADTVVMSAREIALGMLD 576 (609)
Q Consensus 524 -~~n~~~~~~~~~~~~~~~iia~~~~~---~~~~~l~~~Ga~~vi~p~~~~a~~~~~ 576 (609)
..+... -.....++..++=.+-++ ...+..++.|+. +++=.+.--.|-++
T Consensus 206 ~~~~~p~--~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~-~i~Gl~MLv~Qa~~ 259 (284)
T PRK12549 206 KHPGLPL--PAELLRPGLWVADIVYFPLETELLRAARALGCR-TLDGGGMAVFQAVD 259 (284)
T ss_pred CCCCCCC--CHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCE-EECCHHHHHHHHHH
T ss_conf 8999999--988918787567612077457999999988590-77839999999999
No 466
>pfam06408 consensus
Probab=94.47 E-value=0.25 Score=26.01 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=4.9
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999995898
Q gi|254780924|r 528 YITQEARNSNPS 539 (609)
Q Consensus 528 ~~~~~~~~~~~~ 539 (609)
+....+|++.|.
T Consensus 376 LsieeaR~l~p~ 387 (471)
T pfam06408 376 LSIEEARKLAPY 387 (471)
T ss_pred CCHHHHHHHCCC
T ss_conf 776999844589
No 467
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.47 E-value=0.15 Score=27.59 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=59.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECC--CHHHHH
Q ss_conf 179973774899999999847990899719989999999769929997899989998489314679999359--968999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIS--TAFEAA 527 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~--~~~~n~ 527 (609)
.+-|+|+|++|+.+++.+...|.++...|..++.- .....+. +.+++ -+.++|.+.+..+ ++..++
T Consensus 148 tvGIiG~G~IG~~va~~~~~fg~~Vi~yD~~~~~~-----~~~~~~~------~slee-ll~~sDiIslh~Plt~~T~~l 215 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKD-----LDFLTYK------DSVKE-AIKDADIISLHVPANKESYHL 215 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC-----CCCCEEC------CCHHH-HHHHCCEEEECCCCCHHHHCC
T ss_conf 89996758899999999875699899989986422-----1213232------78999-987599999737685331200
Q ss_pred HHHHHHHHHCCCCEEEEEE-----CCHHHHHHHHH
Q ss_conf 9999999958988089994-----69899999997
Q gi|254780924|r 528 YITQEARNSNPSILIIALA-----DSDSEVEHLTR 557 (609)
Q Consensus 528 ~~~~~~~~~~~~~~iia~~-----~~~~~~~~l~~ 557 (609)
.-....++.-+...+|-.+ +..+-.+.|+.
T Consensus 216 In~~~l~~MK~~ailINtaRG~iVde~aL~~AL~~ 250 (330)
T PRK12480 216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHC
T ss_conf 48999975799976997278633199999999975
No 468
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.46 E-value=0.19 Score=26.86 Aligned_cols=122 Identities=16% Similarity=0.312 Sum_probs=69.9
Q ss_pred CEEEECC-CHHHHHHHHHHHHC-CCCEE-EECCCHH-HH-HHHHH------CCCCEEECCCCCHHHHHHCCHHHCCEEEE
Q ss_conf 1799737-74899999999847-99089-9719989-99-99997------69929997899989998489314679999
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAA-GIALL-VIEDSEK-KI-EELRS------LGIDVIYGNATITKILLMANIEKARSLVV 518 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~-~~~v~-vid~~~~-~~-~~~~~------~g~~~~~gd~~~~~~l~~~~i~~a~~vi~ 518 (609)
+|.|+|+ ||+|+.+++...+. +.+++ .+|.+.. .+ +...+ .+.. ++.| +++. .+++|. ++
T Consensus 4 kI~i~Ga~GrMG~~i~~~i~~~~~~~l~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~~------l~~~-~~~~DV-vI 74 (265)
T PRK00048 4 KVGVAGASGRMGRELIEAVEAAEDLELVAALDRPGSPLVGQDAGELAGLGKLGVP-ITDD------LEAV-LDDFDV-LI 74 (265)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCE-ECCC------HHHH-HCCCCE-EE
T ss_conf 9999888887799999999868997999999468972336535665276767843-1178------9886-055998-99
Q ss_pred ECCCHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCC--CCEEECHHHHHHHHHHHHHHHH
Q ss_conf 35996899999999999589880899946-989999999769--9878765899999999998742
Q gi|254780924|r 519 SISTAFEAAYITQEARNSNPSILIIALAD-SDSEVEHLTRYG--ADTVVMSAREIALGMLDRLNQV 581 (609)
Q Consensus 519 ~~~~~~~n~~~~~~~~~~~~~~~iia~~~-~~~~~~~l~~~G--a~~vi~p~~~~a~~~~~~l~~~ 581 (609)
-..+++.....+..+.+.+ ..-++..+. ++++.+.++++- +-.++.|.+-.|..+...+.+.
T Consensus 75 DFS~p~~~~~~~~~~~~~~-~~~ViGTTG~~~~~~~~i~~~s~~ipil~apNfSlGvnll~~l~~~ 139 (265)
T PRK00048 75 DFTTPEATLENLEFALEHG-KPLVIGTTGFTEEQLAALREAAKKIPVVIAPNFSVGVNLLMKLAEK 139 (265)
T ss_pred ECCCHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 8998899999999999749-9779960899989999999746588789978558999999999999
No 469
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.16 Score=27.38 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=47.8
Q ss_pred EEEECCC-HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHC-C--CCEEECCCCCHHHHHHCC------HHHCCEEEEE
Q ss_conf 7997377-489999999984799089971998999999976-9--929997899989998489------3146799993
Q gi|254780924|r 451 VILVGYG-RIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL-G--IDVIYGNATITKILLMAN------IEKARSLVVS 519 (609)
Q Consensus 451 vii~G~g-~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~-g--~~~~~gd~~~~~~l~~~~------i~~a~~vi~~ 519 (609)
++|-|.+ -+|+.+++.|.++|++|++.+.|++..+.+.+. + ...+..|.+|++-.+++- ..+.|.+|-.
T Consensus 7 vlITGassGIG~aiA~~l~~~G~~Vi~~~R~~~~l~~l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDvLVNN 85 (277)
T PRK06180 7 WLITGVSSGFGRALAQAALAAGHRVVGTVRSAAARRDFEALHPGRALARVLDVTDFDAIDGVVADAEATVGPIDVLVNN 85 (277)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9991787399999999999879999999899999999998679957999983799999999999999981998699989
No 470
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=94.44 E-value=0.3 Score=25.46 Aligned_cols=73 Identities=8% Similarity=0.225 Sum_probs=51.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEE-----EECCCHHHHHHHHHCCCC-EEECCCCCHHHHHHCCHHHCCEEEEEC
Q ss_conf 7817997377489999999984799089-----971998999999976992-999789998999848931467999935
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALL-----VIEDSEKKIEELRSLGID-VIYGNATITKILLMANIEKARSLVVSI 520 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~-----vid~~~~~~~~~~~~g~~-~~~gd~~~~~~l~~~~i~~a~~vi~~~ 520 (609)
.+.++|+..-.++...-+.+.++|.+++ .+-.-.+.++++.++|++ +++||..+|++---.+-.+-...++.+
T Consensus 65 ~~~~ViirAHGi~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~vv~~ 143 (304)
T PRK01045 65 DGAIVIFSAHGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQAPDGVYLVES 143 (304)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 9998999778998999999996599777050830589999999998589889998178988999699757997399886
No 471
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.42 E-value=0.21 Score=26.49 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=16.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 1799737748999999998479908997199
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDS 480 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~~ 480 (609)
+|-|+|.|+.|...|..|.+.|++|++.|..
T Consensus 329 kVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~ 359 (654)
T PRK12769 329 RVAIIGAGPAGLACADVLTRNGVAVTVYDRH 359 (654)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 8999897789999999999769757995257
No 472
>KOG2304 consensus
Probab=94.41 E-value=0.081 Score=29.37 Aligned_cols=43 Identities=21% Similarity=0.419 Sum_probs=38.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 4781799737748999999998479908997199899999997
Q gi|254780924|r 447 LCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS 489 (609)
Q Consensus 447 ~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~ 489 (609)
..+||-|+|.|..|.-+|+.-...|++|.++|.|++...++++
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~ 52 (298)
T KOG2304 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATK 52 (298)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHH
T ss_conf 5662478756643203999988519946985477789999999
No 473
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=94.41 E-value=0.21 Score=26.54 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=58.7
Q ss_pred CEEEECCCHHHHH----HHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0899719989999----99976992999789998999848931467999935996-899999999999589880899946
Q gi|254780924|r 473 ALLVIEDSEKKIE----ELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA-FEAAYITQEARNSNPSILIIALAD 547 (609)
Q Consensus 473 ~v~vid~~~~~~~----~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~~iia~~~ 547 (609)
++.++|+|+...+ .++..|+++...+ +-.+.++...-++.|.+++-..=+ ......+...|+.+++.+|+.-+.
T Consensus 2 kILivEdd~~~~~~l~~~L~~~g~~V~~a~-~~~~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~~~~piI~lta 80 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAE-DAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCEEEEEC
T ss_conf 899995989999999999997899999989-9999999997579989999799989886400120110489876899944
Q ss_pred CHHHH--HHHHHCCCCEEECHHH
Q ss_conf 98999--9999769987876589
Q gi|254780924|r 548 SDSEV--EHLTRYGADTVVMSAR 568 (609)
Q Consensus 548 ~~~~~--~~l~~~Ga~~vi~p~~ 568 (609)
..+.. -.-.++|||.-+....
T Consensus 81 ~~~~~~~~~al~~Gaddyl~KP~ 103 (223)
T PRK10816 81 RESWQDKVEVLSAGADDYVTKPF 103 (223)
T ss_pred CCCHHHHHHHHHCCCCEEECCCC
T ss_conf 45677899999869988641897
No 474
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=94.41 E-value=0.15 Score=27.53 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=90.6
Q ss_pred EECCCHHHHHHHHHHHHCCC--CEEEECCCHHHHHHHHHC----------C-CCEEECCCCCHHHHHHCCHHHCCEEEEE
Q ss_conf 97377489999999984799--089971998999999976----------9-9299978999899984893146799993
Q gi|254780924|r 453 LVGYGRIGKVIVQNLKAAGI--ALLVIEDSEKKIEELRSL----------G-IDVIYGNATITKILLMANIEKARSLVVS 519 (609)
Q Consensus 453 i~G~g~~g~~~~~~L~~~~~--~v~vid~~~~~~~~~~~~----------g-~~~~~gd~~~~~~l~~~~i~~a~~vi~~ 519 (609)
|+|.|.+|...|-.|..+|. ++++||-|+++++--..+ - .++..||. ...++||.+|+|
T Consensus 1 iiG~G~VGss~A~a~~~~g~a~E~vliDin~~ka~Gea~DL~ha~~f~~~~~~~v~~gdY--------~dc~daD~vVIT 72 (302)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGLADEIVLIDINKDKAEGEAMDLQHAASFLPTPGVKVRAGDY--------SDCKDADLVVIT 72 (302)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCHHHCCCCCEEEECCCH--------HHHCCCCEEEEE
T ss_conf 911486189999999731503188788347577898786552222223786117761897--------996389789993
Q ss_pred CCCH-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHCCCCEEECHH--HHHHHH---H
Q ss_conf 5996-----------8999----9999999958988089994698999-----999976998787658--999999---9
Q gi|254780924|r 520 ISTA-----------FEAA----YITQEARNSNPSILIIALADSDSEV-----EHLTRYGADTVVMSA--REIALG---M 574 (609)
Q Consensus 520 ~~~~-----------~~n~----~~~~~~~~~~~~~~iia~~~~~~~~-----~~l~~~Ga~~vi~p~--~~~a~~---~ 574 (609)
-+-. +.|. .++..+.+.+|+. |+..+.||-.. .++--...++||-.= .++|+= +
T Consensus 73 AG~~QKPGEtRL~Lv~~N~~I~K~Iv~~v~k~gf~g-I~lvatNPVDIlTy~~~klSGfP~~rVIGSGT~LDTaRfR~~l 151 (302)
T TIGR01771 73 AGAPQKPGETRLELVDRNVKIMKSIVPEVVKSGFDG-IFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTARFRYLL 151 (302)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 277753488879999988999999854654138984-7999866315899999987478720077506613558999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9998--7421002678787788873038960048859
Q gi|254780924|r 575 LDRL--NQVHHEKVTCDRSNKDEIDSKDDSSVLSVNL 609 (609)
Q Consensus 575 ~~~l--~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l 609 (609)
++++ .....+.+...+++-.|+-+....++-|+||
T Consensus 152 ~~~~~v~p~sVhaYi~GEHGDSe~~vWS~a~IgG~pl 188 (302)
T TIGR01771 152 AEKLGVDPQSVHAYIIGEHGDSEVAVWSSATIGGVPL 188 (302)
T ss_pred HHHHCCCCCCCCCEEEEEECCCCEEHCCCCEECCEEH
T ss_conf 9985798442120486410681000101435702670
No 475
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.38 E-value=0.31 Score=25.36 Aligned_cols=66 Identities=12% Similarity=0.237 Sum_probs=45.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECC
Q ss_conf 17997377489999999984799---0899719989999999769929997899989998489314679999359
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGI---ALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIS 521 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~---~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~ 521 (609)
+|-++|+|.+|+.+++-|.+.+. ++.+.|.|+++.+++.++.-.+... ..+.+. ++++|.++.++-
T Consensus 2 kIgfIG~GnMg~Aii~Gl~~~~~~~~~i~v~~r~~~~~~~l~~~~~~v~~~-~~n~~~-----~~~~dvi~LaVK 70 (255)
T PRK06476 2 RIGFIGTGAITEAMVTGLLSSPADVSEIIVSPRNAQIAARLAARFAKVRIA-KDNQAV-----VDRSDVVFLAVR 70 (255)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEEE-CCHHHH-----HHHCCEEEEEEC
T ss_conf 899986469999999999978899250889898989999999876955985-788999-----851887888617
No 476
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.34 E-value=0.2 Score=26.59 Aligned_cols=84 Identities=24% Similarity=0.468 Sum_probs=48.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECC-CHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCH--HHH
Q ss_conf 179973774899999999847990899719-98999999976992999789998999848931467999935996--899
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGIALLVIED-SEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTA--FEA 526 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~~v~vid~-~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~--~~n 526 (609)
.+=|+|+|++|+.+++.++..|.++...|. .++. ..+.+.+++-.+=+++| .++|.+.+.++-. ..+
T Consensus 144 TvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-----~~~~~~~~~~~~Ld~lL-----~~aDiv~lh~PlT~eT~g 213 (324)
T COG0111 144 TVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-----RAGVDGVVGVDSLDELL-----AEADILTLHLPLTPETRG 213 (324)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC-----CCCCCCCEECCCHHHHH-----HHCCEEEECCCCCCHHHC
T ss_conf 89998987899999999986798699988988600-----01235631102699998-----769999983899812221
Q ss_pred HHHHHHHHHHCCCCEEE
Q ss_conf 99999999958988089
Q gi|254780924|r 527 AYITQEARNSNPSILII 543 (609)
Q Consensus 527 ~~~~~~~~~~~~~~~ii 543 (609)
+.-.....++-+...+|
T Consensus 214 ~i~~~~~a~MK~gailI 230 (324)
T COG0111 214 LINAEELAKMKPGAILI 230 (324)
T ss_pred CCCHHHHHCCCCCCEEE
T ss_conf 37999994489981999
No 477
>PRK07538 hypothetical protein; Provisional
Probab=94.34 E-value=0.055 Score=30.50 Aligned_cols=12 Identities=33% Similarity=0.255 Sum_probs=5.9
Q ss_pred CCEEECHHHHHH
Q ss_conf 987876589999
Q gi|254780924|r 560 ADTVVMSAREIA 571 (609)
Q Consensus 560 a~~vi~p~~~~a 571 (609)
+|.||++++..+
T Consensus 382 ~~~~~~~~~~~~ 393 (413)
T PRK07538 382 IDDVISPAELEA 393 (413)
T ss_pred HHHCCCHHHHHH
T ss_conf 676299999999
No 478
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.33 E-value=0.31 Score=25.30 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=35.4
Q ss_pred CCCCCCCCCCEEEECC--CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----C----CCCEEECCCCCHHHHH
Q ss_conf 2232134781799737--748999999998479908997199899999997----6----9929997899989998
Q gi|254780924|r 441 TIQKTDLCDHVILVGY--GRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS----L----GIDVIYGNATITKILL 506 (609)
Q Consensus 441 ~~~~~~~~~~vii~G~--g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~----~----g~~~~~gd~~~~~~l~ 506 (609)
..+.+|++++++++=+ .-+|++.++.|.++|..|++...|+++.+++.+ + .+.++..|-+|.+-.+
T Consensus 8 ~~~ipDL~GK~~lITGa~sGIG~~~A~~La~~ga~Vil~~R~~~k~~~a~~~i~~~~~~~~i~~~~lDLssl~sV~ 83 (306)
T PRK06197 8 AADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGNAAAARITAAHPGADVTLQELDLASLASVR 83 (306)
T ss_pred HHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH
T ss_conf 6568898999999916895999999999997849899997989999999999997689985799976643077899
No 479
>PRK07985 oxidoreductase; Provisional
Probab=94.33 E-value=0.28 Score=25.68 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=46.5
Q ss_pred CCCC-EEEECCCH-HHHHHHHHHHHCCCCEEEEC--CCHHHHHH----HHHCCCC--EEECCCCCHHHHHHC------CH
Q ss_conf 4781-79973774-89999999984799089971--99899999----9976992--999789998999848------93
Q gi|254780924|r 447 LCDH-VILVGYGR-IGKVIVQNLKAAGIALLVIE--DSEKKIEE----LRSLGID--VIYGNATITKILLMA------NI 510 (609)
Q Consensus 447 ~~~~-vii~G~g~-~g~~~~~~L~~~~~~v~vid--~~~~~~~~----~~~~g~~--~~~gd~~~~~~l~~~------~i 510 (609)
++++ ++|-|.++ +|+.+|+.|.++|.+|++.+ .+++..++ .++.|.+ .+.+|.+|++..+++ ..
T Consensus 47 L~gKvalVTGas~GIG~aiA~~lA~~GA~Vvi~~~~~~~~~a~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~lv~~~~~~f 126 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 89997999172669999999999987999999429966678999999999729958999767899999999999999985
Q ss_pred HHCCEEEEE
Q ss_conf 146799993
Q gi|254780924|r 511 EKARSLVVS 519 (609)
Q Consensus 511 ~~a~~vi~~ 519 (609)
.+.|.++..
T Consensus 127 G~iDiLVnn 135 (294)
T PRK07985 127 GGLDIMALV 135 (294)
T ss_pred CCCCEEEEE
T ss_conf 998889980
No 480
>pfam02153 PDH Prephenate dehydrogenase. Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis.
Probab=94.32 E-value=0.31 Score=25.38 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHCC--CCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999998479--908997199899999997699299978999899984893146799993599689999999999958988
Q gi|254780924|r 463 IVQNLKAAG--IALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSI 540 (609)
Q Consensus 463 ~~~~L~~~~--~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ 540 (609)
+|..|+++| .++..+|.|++.++.+.+.|.--...+..+. +.++|.+++|++-+.....+...++...++.
T Consensus 1 lAlalk~~~~~~~I~g~d~~~~~~~~A~~~g~id~~~~~~~~-------~~~aDlvila~Pv~~~~~~l~~l~~~~~~~~ 73 (258)
T pfam02153 1 IALALRRKGFNVTVIGYDIDEEAAVAAVELGLGDEATNDIEA-------AQEADIVVLAVPIEVTLEVLKELAPHLKEGA 73 (258)
T ss_pred CHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCHHH-------HCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 928886169996799985999999999986990324686777-------6679999996999999999999886558995
Q ss_pred EEE
Q ss_conf 089
Q gi|254780924|r 541 LII 543 (609)
Q Consensus 541 ~ii 543 (609)
-+.
T Consensus 74 ivt 76 (258)
T pfam02153 74 LIT 76 (258)
T ss_pred EEE
T ss_conf 899
No 481
>pfam03686 UPF0146 Uncharacterized protein family (UPF0146). The function of this family of proteins is unknown.
Probab=94.29 E-value=0.26 Score=25.81 Aligned_cols=87 Identities=20% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHHH
Q ss_conf 78179973774899999999847990899719989999999769929997899989998489314679999359968999
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAA 527 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n~ 527 (609)
+.+++=+|.|+. ..+|+.|.+.|.+++++|-|+..+ ..|.+++.-|.++|+. .==+.|+.+-+.-+..|.-.
T Consensus 14 ~gkiVEVGIG~~-~~vA~~L~~~g~dv~~tDi~~~av----~~gl~~v~DDif~P~~---~lY~~A~lIYSIRPp~El~~ 85 (127)
T pfam03686 14 RGKVVEVGIGFF-LDVAKRLAERGFDVLATDINEKAV----PEGLRFVVDDITNPNI---SIYEGADLIYSIRPPPELQS 85 (127)
T ss_pred CCCEEEEECCCC-HHHHHHHHHCCCCEEEEECCCCCC----CCCCCEEECCCCCCCH---HHHCCCCEEEECCCCHHHHH
T ss_conf 885899913688-899999998599689997776576----6788878725889898---89558788998189878889
Q ss_pred HHHHHHHHHCCCCEE
Q ss_conf 999999995898808
Q gi|254780924|r 528 YITQEARNSNPSILI 542 (609)
Q Consensus 528 ~~~~~~~~~~~~~~i 542 (609)
.+...+|+.+.+..|
T Consensus 86 ~i~~lA~~v~a~liI 100 (127)
T pfam03686 86 AILDVAKAVGAPLYI 100 (127)
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 999999981998999
No 482
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.27 E-value=0.18 Score=26.90 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHCC---------------------------CCEEECCCCC
Q ss_conf 17997377489999999984799-0899719989999999769---------------------------9299978999
Q gi|254780924|r 450 HVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSLG---------------------------IDVIYGNATI 501 (609)
Q Consensus 450 ~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~g---------------------------~~~~~gd~~~ 501 (609)
+|+|+|.|-.|-.+++.|...|. ++.++|.|.--...+.++- +..+.++..+
T Consensus 1 KVlvvGaGglGce~~k~La~~Gvg~i~iiD~D~Ie~SNLnRQfLf~~~dvGk~Ka~vAa~~l~~~Np~~~I~~~~~~v~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 98999488879999999998399869997599005677013024464426882299999999987899779998055686
Q ss_pred HHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 899984893146799993599689999999999958
Q gi|254780924|r 502 TKILLMANIEKARSLVVSISTAFEAAYITQEARNSN 537 (609)
Q Consensus 502 ~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~ 537 (609)
++.+...=.++.|.++-++||-+.-..+-...-...
T Consensus 81 e~~~~~~f~~~~DvVi~alDN~~aR~~vN~~c~~~~ 116 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLI 116 (234)
T ss_pred CCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 210579888529999988578889999999999809
No 483
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.25 E-value=0.32 Score=25.28 Aligned_cols=106 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCEE-EECCCHHHHHHHHHH-HHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC
Q ss_conf 2333321112223213478179-973774899999999-84799089971998999999976992999789998999848
Q gi|254780924|r 431 VESILEQQEVTIQKTDLCDHVI-LVGYGRIGKVIVQNL-KAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA 508 (609)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~vi-i~G~g~~g~~~~~~L-~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~ 508 (609)
.+.............+.++..+ |+|+|++|+.+++.+ ...|.++..-|..++ ++..+. ....+.|++.
T Consensus 128 ~~~~~~~w~~~~~g~~l~~ktvGIiG~G~IG~~vak~~a~~fgm~vi~yd~~~~--~~~~~~--------~~~~~~l~el 197 (332)
T PRK08605 128 VREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGCDVVAYDPFPN--AKAATY--------VDYKDTIEEA 197 (332)
T ss_pred HHHCCCCCCCCCCCEECCCCEEEEEEEEHHHHHHHHHHHHHCCCEEEEECCCCC--HHHHHC--------CEECCCHHHH
T ss_conf 982587647765754503778999974368899999998756982678778876--556620--------7021689999
Q ss_pred CHHHCCEEEEECC--CHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9314679999359--96899999999999589880899946
Q gi|254780924|r 509 NIEKARSLVVSIS--TAFEAAYITQEARNSNPSILIIALAD 547 (609)
Q Consensus 509 ~i~~a~~vi~~~~--~~~~n~~~~~~~~~~~~~~~iia~~~ 547 (609)
++++|.+.+.++ ++..++.-....++.-++..+|-.++
T Consensus 198 -l~~sDiIslh~Plt~~T~~lI~~~~l~~MK~~a~lINtaR 237 (332)
T PRK08605 198 -VEGADIVTLHMPATKYNTYLFNADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred -HHHCCEEEEECCCCHHHHHHCCHHHHHHCCCCCEEEEECC
T ss_conf -8649999993368835501218999972247968999068
No 484
>PRK07476 threonine dehydratase; Provisional
Probab=94.24 E-value=0.33 Score=25.17 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEE---CCCHHHHHHHHHCCCCE-EECCCCC------------------
Q ss_conf 2134781799737748999999998479908997---19989999999769929-9978999------------------
Q gi|254780924|r 444 KTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVI---EDSEKKIEELRSLGIDV-IYGNATI------------------ 501 (609)
Q Consensus 444 ~~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vi---d~~~~~~~~~~~~g~~~-~~gd~~~------------------ 501 (609)
..+...+|+-.-.|..|..+|-.-...|+++.++ +.++++++.++..|-++ .+++..|
T Consensus 66 ~~~~~~gvv~aSsGN~g~alA~aa~~~G~~~~Iv~P~~~~~~K~~~i~~~GA~V~~~~~~~~ea~~~a~~~a~~~g~~~i 145 (323)
T PRK07476 66 AQERARGVVTASTGNHGRALAHAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGDSQDDAQAEVERLVREEGLTMV 145 (323)
T ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 86468828995686779999999998399089988887839999999982785714347778999999999764386760
Q ss_pred ----------------HHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHCCCCEEE
Q ss_conf ----------------899984893146799993599689999999999958988089-994698999999976998787
Q gi|254780924|r 502 ----------------TKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILII-ALADSDSEVEHLTRYGADTVV 564 (609)
Q Consensus 502 ----------------~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~ii-a~~~~~~~~~~l~~~Ga~~vi 564 (609)
.|.+++.+ +.|.+++..+.--.-.-++...|+.+|+++++ +..........-.+.|-..-+
T Consensus 146 ~p~~~p~~i~G~~Tig~EI~eq~p--~~d~vvv~~GgGGl~~Gi~~~~k~~~p~~kvigVe~~~~~~~~~s~~~g~~~~~ 223 (323)
T PRK07476 146 PPFDDPRIIAGQGTLGLEILEALP--DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQV 223 (323)
T ss_pred CCCCCHHHHHHCCHHHHHHHHHCC--CCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEC
T ss_conf 577987788550079999998667--755334304883589999998863179866999613887489999984995205
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 658999999999987421002678787788873038960048
Q gi|254780924|r 565 MSAREIALGMLDRLNQVHHEKVTCDRSNKDEIDSKDDSSVLS 606 (609)
Q Consensus 565 ~p~~~~a~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 606 (609)
.+..-.++.+..-+.......+...+...+++-.-+|.++..
T Consensus 224 ~~~~tiad~l~~gi~~~~~~~~~~~~~~~d~~v~V~d~ei~~ 265 (323)
T PRK07476 224 EEVPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDEAEIAR 265 (323)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECHHHHHH
T ss_conf 998850020256888775215898885079389989999999
No 485
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.21 E-value=0.087 Score=29.14 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCH
Q ss_conf 22321347817997377489999999984799089971998
Q gi|254780924|r 441 TIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSE 481 (609)
Q Consensus 441 ~~~~~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~ 481 (609)
.+..+..-.+|+|+|.|+-|...|..+.+.|.+++++|.++
T Consensus 10 ~~~~p~~gkkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~ 50 (350)
T PRK12770 10 KEKPPPTGKKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLP 50 (350)
T ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 78999897989999955889999999997899859995369
No 486
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=94.19 E-value=0.33 Score=25.11 Aligned_cols=300 Identities=16% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHCCHHHHHHHHHHHHHH
Q ss_conf 99870888679999999962741038558478999999999999998825416889998---415158899899999999
Q gi|254780924|r 17 IANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLI---SVRGIALPGALIQIILGT 93 (609)
Q Consensus 17 la~rl~lP~i~~~il~GillGp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~---~~~~~~~~~~~~~~~~~~ 93 (609)
..++++.=.-..+.+.=+++.-.+...-+.-.++.....+.+.++||..|+.++.++++ ++++..+.....+.++.=
T Consensus 3 ~~~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmP 82 (319)
T COG0385 3 LLRFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMP 82 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 88887675899999999999999872531102235789999999999467778899999772442689999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 99999999967886899999999974238999987656554114405789899877778999999999986134443301
Q gi|254780924|r 94 ALGALMGMVMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPS 173 (609)
Q Consensus 94 ~~~~~~~~~lg~~~~~all~g~~l~~ts~~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i~~l~il~~~~~~~~~~~~ 173 (609)
.++...++.+. .+..+..|..+..+.|+.+.. ..-....+-+..-....+.+-+-+.....=..+..+.+.+.....
T Consensus 83 lla~~~~~~~~--l~~~l~~Gl~ll~~~Pggv~S-~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~ 159 (319)
T COG0385 83 LLALLLAKLFP--LPPELAVGLLLLGCCPGGVAS-NAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDV 159 (319)
T ss_pred HHHHHHHHHCC--CCHHHHHHHHHEEECCCCHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 99999997728--998999768851458884269-999999647688999999999889999999999999468878865
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35678999988765321014799999998410100001000344543877642035673689999999999999988874
Q gi|254780924|r 174 SMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSKL 253 (609)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (609)
.... ......+.+-+...-....+
T Consensus 160 ~~m~--------------------------------------------------------~~i~~~vllP~~LG~~~r~~ 183 (319)
T COG0385 160 GGMF--------------------------------------------------------LSILLQVLLPFVLGQLLRPL 183 (319)
T ss_pred HHHH--------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 8999--------------------------------------------------------99999999999999999998
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 11002466666422202761456899999766899999999886531147988620256777765554221223211000
Q gi|254780924|r 254 FGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIVIIGKALIAFIVVI 333 (609)
Q Consensus 254 ~g~s~~lgaf~aG~~l~~~~~~~~~~~~~~~~~~~~~~~fFv~iG~~l~~~~l~~~~~~~l~~~~~~~~~k~~~~~~~~~ 333 (609)
. ++.-+-.++..+.-+-.....=++.-..-+......+...+...+......-....|..++
T Consensus 184 ~------------------~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar 245 (319)
T COG0385 184 L------------------PKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGAR 245 (319)
T ss_pred H------------------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7------------------9999878652014629999999999999999875789999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2558799999986432122025678898876417878-668778778889999999999986789
Q gi|254780924|r 334 AFGRSVATALTIAASLSQIGEFSFILANLGVELGILP-DQARDLILASSIISIILNPLVFVLAEF 397 (609)
Q Consensus 334 ~~~~~~~~~~~~g~~l~~~g~~~~v~a~~a~~~g~i~-~~~~~~i~~~~~~s~~itp~l~~~~~~ 397 (609)
..|++..++..+.+.-..+. .-...+.....-+ +...--.......-.+..+++..+..+
T Consensus 246 ~~g~~~a~~iti~ie~g~qn----~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~ 306 (319)
T COG0385 246 LLGFDKADEITIAIEGGMQN----LGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYAR 306 (319)
T ss_pred HHCCCHHHCEEEEEEECCCC----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82898545055687534122----78789999861798336758999999999999999999973
No 487
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=94.19 E-value=0.33 Score=25.10 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCH--------------------------HHHHHHHHC-CCCEEECCC
Q ss_conf 7817997377489999999984799-089971998--------------------------999999976-992999789
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSE--------------------------KKIEELRSL-GIDVIYGNA 499 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~--------------------------~~~~~~~~~-g~~~~~gd~ 499 (609)
+-||+|+|.+..|.++|+.|--.|. .++++|++. ++.+++..+ ..+++.++.
T Consensus 20 ~s~VLiiG~~glG~EiaKNLvLaGV~svti~D~~~v~~~DLg~nFfl~~~diGk~Raea~~~~L~eLNp~V~v~~~~~~~ 99 (425)
T cd01493 20 SAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEESP 99 (425)
T ss_pred HCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 69399999971199999872132897699995991878885766156677858839999999999847868547870687
Q ss_pred CCHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 998999848931467999935996899999999999589880899946
Q gi|254780924|r 500 TITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALAD 547 (609)
Q Consensus 500 ~~~~~l~~~~i~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~~iia~~~ 547 (609)
.+...-...-+.+.+.||++--+.+....+-...|+++.. -|.+.+.
T Consensus 100 ~~~~~~~~~~~~~f~vVV~t~~~~~~~~~in~~cr~~~i~-fI~~~~~ 146 (425)
T cd01493 100 EALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIP-LLYVRSY 146 (425)
T ss_pred HHHHHCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC-EEEEEEE
T ss_conf 8864268767528338998288999999999999986997-8999824
No 488
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.19 E-value=0.2 Score=26.67 Aligned_cols=72 Identities=21% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEE
Q ss_conf 2232134781799737748999999998479-908997199899999997699299978999899984893146799993
Q gi|254780924|r 441 TIQKTDLCDHVILVGYGRIGKVIVQNLKAAG-IALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVS 519 (609)
Q Consensus 441 ~~~~~~~~~~vii~G~g~~g~~~~~~L~~~~-~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~ 519 (609)
+....+...+++|+|.|..++.++-.|.+.| .++.++..++++.+.+.+. ...+...+....++|.+|-+
T Consensus 115 ~~~~~~~~~~~lilGaGGaarai~~aL~~~G~~~i~I~nR~~~~a~~L~~~---------~~~~~~~~~~~~~~dliINa 185 (272)
T PRK12550 115 EEYQVPPDAVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL---------YGYEWRPDLGGIEADLLVNV 185 (272)
T ss_pred HHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH---------CCCCCCCCCCCCCCCEEEEC
T ss_conf 970888677389973623389999999976998799998998999999987---------39733464334668979966
Q ss_pred CC
Q ss_conf 59
Q gi|254780924|r 520 IS 521 (609)
Q Consensus 520 ~~ 521 (609)
|+
T Consensus 186 Tp 187 (272)
T PRK12550 186 TP 187 (272)
T ss_pred CC
T ss_conf 76
No 489
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=94.19 E-value=0.11 Score=28.54 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred CEEEECCCH-HHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC--CHHHCCEEEEECC
Q ss_conf 179973774-89999999984799089971998999999976992999789998999848--9314679999359
Q gi|254780924|r 450 HVILVGYGR-IGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA--NIEKARSLVVSIS 521 (609)
Q Consensus 450 ~vii~G~g~-~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~--~i~~a~~vi~~~~ 521 (609)
||+|-|.++ +|+.++++|.+++.++.+.....+.......+....+..|.+|++-.++. .+++.|.+|-+-+
T Consensus 2 nVLITGas~GIG~aia~~l~~~~~~~~v~~~~~~~~~~~~~~~v~~~~~Dvt~~~~i~~~~~~~~~iD~linnAG 76 (235)
T PRK09009 2 NILIVGGSGGIGKAMVKQLLETYPDATVHATYRHHKPDFRHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVG 76 (235)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCC
T ss_conf 799975563999999999985699809999737765444579838998747999999999987087789997675
No 490
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.15 E-value=0.34 Score=25.04 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEE--CCCHHHHHHHHHC---CCCEEECCCCCHHHHHH
Q ss_conf 32111222321347817997--37748999999998479908997--1998999999976---99299978999899984
Q gi|254780924|r 435 LEQQEVTIQKTDLCDHVILV--GYGRIGKVIVQNLKAAGIALLVI--EDSEKKIEELRSL---GIDVIYGNATITKILLM 507 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vi--d~~~~~~~~~~~~---g~~~~~gd~~~~~~l~~ 507 (609)
+.--....+..++++++.++ |.+.+|+.+++.|.++|.+|++. +.+.+..++..++ ....+.+|.+|++-.++
T Consensus 1 m~~~~~~m~~f~L~gKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~ 80 (258)
T PRK06935 1 MNLMGFSMDFFSLKGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQLDLTKKESAEA 80 (258)
T ss_pred CCCCCCCHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
T ss_conf 98000425431999998999485758999999999987999999729978999999999669937999904899999999
Q ss_pred C
Q ss_conf 8
Q gi|254780924|r 508 A 508 (609)
Q Consensus 508 ~ 508 (609)
+
T Consensus 81 ~ 81 (258)
T PRK06935 81 V 81 (258)
T ss_pred H
T ss_conf 9
No 491
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.15 E-value=0.31 Score=25.36 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCEEEEC---CCHHHHHHHHHHHHCCCCEEEE---CCCHHHHHHHHHC--CCCEEECCCCCHHHHHHC
Q ss_conf 8179973---7748999999998479908997---1998999999976--992999789998999848
Q gi|254780924|r 449 DHVILVG---YGRIGKVIVQNLKAAGIALLVI---EDSEKKIEELRSL--GIDVIYGNATITKILLMA 508 (609)
Q Consensus 449 ~~vii~G---~g~~g~~~~~~L~~~~~~v~vi---d~~~~~~~~~~~~--g~~~~~gd~~~~~~l~~~ 508 (609)
..++|-| ...+|+.+++.|.++|.+|.+. |.+.+.++++.++ ...++.+|.+|++-.+++
T Consensus 7 K~~lVTG~a~~~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~g~~~~~~~Dv~~~~~v~~~ 74 (260)
T PRK06997 7 KRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVADDAQIDAL 74 (260)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf 88999899887289999999999859999998088066999999998629847998379999999999
No 492
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.14 E-value=0.34 Score=25.03 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCCCCCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEEC-CCHHHHHHHHHC---CCCEEECCCCCHHHHHHC
Q ss_conf 2321347817997--377489999999984799089971-998999999976---992999789998999848
Q gi|254780924|r 442 IQKTDLCDHVILV--GYGRIGKVIVQNLKAAGIALLVIE-DSEKKIEELRSL---GIDVIYGNATITKILLMA 508 (609)
Q Consensus 442 ~~~~~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid-~~~~~~~~~~~~---g~~~~~gd~~~~~~l~~~ 508 (609)
.+..+++++++++ |.+.+|+.+++.|.++|.+|+.++ .+.+..+...+. ....+.+|.+|++-.+++
T Consensus 1 m~~f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~ 73 (251)
T PRK12481 1 MQLFDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSI 73 (251)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf 9762899998999486768999999999986999999789871999999997599479999127999999999
No 493
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase; InterPro: IPR010110 This entry represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm.
Probab=94.13 E-value=0.098 Score=28.77 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHCCCCEEECCCCCH--HHHHHCCHHHCCEEEEECCCHH
Q ss_conf 997377489999999984799-089971998999999976992999789998--9998489314679999359968
Q gi|254780924|r 452 ILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSLGIDVIYGNATIT--KILLMANIEKARSLVVSISTAF 524 (609)
Q Consensus 452 ii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~g~~~~~gd~~~~--~~l~~~~i~~a~~vi~~~~~~~ 524 (609)
+|||.|-.+|...-.|.+-|. ++.++.+++++.+++.+.......--.++- .-+++.++++++..|+|.|.|.
T Consensus 134 lviGaGGtsrAA~yaL~sLG~~~I~~inR~~dKl~~L~~~~~~~~~i~~~e~l~~~~~~i~v~~~~v~vStvPaD~ 209 (291)
T TIGR01809 134 LVIGAGGTSRAAVYALASLGVKDIYVINRSKDKLKKLVDLLVSEFVIIRLESLDKELEEIEVKDVEVAVSTVPADK 209 (291)
T ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCC
T ss_conf 8883872148999999866997069973586676688774135613566510133411020245678886157886
No 494
>KOG1650 consensus
Probab=94.13 E-value=0.34 Score=25.02 Aligned_cols=157 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH---CCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 379999999999999998708-88679999999962---74103855847899999999999999882541688999841
Q gi|254780924|r 2 TTIIWGFVLAFIFGAIANRCR-LPTLIGYLVAGILV---GPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLISV 77 (609)
Q Consensus 2 ~~l~~~l~~a~i~g~la~rl~-lP~i~~~il~Gill---Gp~~l~~i~~~~~l~~l~~lgl~~llF~~Gleld~~~l~~~ 77 (609)
..+...+.....+..+...++ ++++.|-.+.|+.+ ||.+-.+.+.-+... .++-+.+..-..|++.|+..+.+
T Consensus 258 ~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~--~~~llPl~~~~~G~k~di~~i~~- 334 (769)
T KOG1650 258 AYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLV--SGLLLPLYFAISGLKTDISRINK- 334 (769)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEECCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHCCCCEEHHHHHH-
T ss_conf 321678999999999999854005232526046426889952679999998878--88998889654152122898888-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 515889989999999999999999967886899999999974238--999987656554114405789899877778999
Q gi|254780924|r 78 RGIALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIAST--VVLLKALQENRILETDRGKIAVGWLIVEDLIIV 155 (609)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~all~g~~l~~ts~--~vv~~~l~~~~~~~~~~g~~~~~~~~~~Di~~i 155 (609)
+..............++.+...+++..+||..++.+|.+++.-+. -++.....|.+..+++.-...+-..+++-...-
T Consensus 335 ~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~ 414 (769)
T KOG1650 335 WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITP 414 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999996586068899999986554999999888873276563219999999998753299
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780924|r 156 LALVLI 161 (609)
Q Consensus 156 ~~l~il 161 (609)
+++..+
T Consensus 415 ~~l~~~ 420 (769)
T KOG1650 415 PLLMFL 420 (769)
T ss_pred HHHHHH
T ss_conf 999875
No 495
>PRK07856 short chain dehydrogenase; Provisional
Probab=94.08 E-value=0.21 Score=26.49 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHC
Q ss_conf 347817997--377489999999984799089971998999999976992999789998999848
Q gi|254780924|r 446 DLCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA 508 (609)
Q Consensus 446 ~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~ 508 (609)
++++.++++ |.+.+|+.+++.|.++|.+|.+.+.+++ +........+.+|.+|++..+++
T Consensus 5 ~l~~K~alITGgs~GIG~aia~~la~~Ga~V~i~~r~~~---~~~~~~~~~~~~Dv~~~~~v~~~ 66 (254)
T PRK07856 5 DLTGRVVLVTGGTRGVGAGISEAFLAAGATVVVCGRRAP---EVDGRPAEFHACDIRDPDQVAAL 66 (254)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH---HCCCCCEEEEECCCCCHHHHHHH
T ss_conf 359998999476768999999999987999999979855---74898439998469999999999
No 496
>PRK05086 malate dehydrogenase; Provisional
Probab=94.06 E-value=0.36 Score=24.93 Aligned_cols=136 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred CEEEECC-CHHHHHHHHHHHHCC---CCEEEECCCHHH---HHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECC-
Q ss_conf 1799737-748999999998479---908997199899---99999769929997899989998489314679999359-
Q gi|254780924|r 450 HVILVGY-GRIGKVIVQNLKAAG---IALLVIEDSEKK---IEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIS- 521 (609)
Q Consensus 450 ~vii~G~-g~~g~~~~~~L~~~~---~~v~vid~~~~~---~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~- 521 (609)
.|.|+|. |.+|+.++-.|..++ .+++++|.++.. +-+++.-...+-.-..+..+..+. ++++|.+|++-+
T Consensus 2 KV~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di~~~~~G~alDL~h~~~~~~~~~~~~~~~~~~--l~~adiVvitAG~ 79 (312)
T PRK05086 2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPA--LEGADVVLISAGV 79 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEECCCHHHH--HCCCCEEEECCCC
T ss_conf 89999899869999999998289877749997588886105656547875466534616986787--1799999987898
Q ss_pred --------------CHHHHHHHHHHHHHHCCCCEEEEEECCHHH------HHHHHHCC---CCEEECHHHHHHHHHHHHH
Q ss_conf --------------968999999999995898808999469899------99999769---9878765899999999998
Q gi|254780924|r 522 --------------TAFEAAYITQEARNSNPSILIIALADSDSE------VEHLTRYG---ADTVVMSAREIALGMLDRL 578 (609)
Q Consensus 522 --------------~~~~n~~~~~~~~~~~~~~~iia~~~~~~~------~~~l~~~G---a~~vi~p~~~~a~~~~~~l 578 (609)
|-..-..++...++.+|+ -++..+.||-+ .+.+++.| -++|+.-...-..|+-..+
T Consensus 80 ~rkpG~tR~dLl~~Na~I~~~i~~~I~~~~p~-aiiivvsNPvD~mt~ia~~~~k~~g~~~~~rv~G~t~LDsaR~r~~l 158 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFV 158 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf 99858988999998789999999988720897-18999548327789999999998389980113333128899999999
Q ss_pred HHHHHHHHHH
Q ss_conf 7421002678
Q gi|254780924|r 579 NQVHHEKVTC 588 (609)
Q Consensus 579 ~~~~~~~~~~ 588 (609)
.+........
T Consensus 159 a~~l~v~~~~ 168 (312)
T PRK05086 159 AELKGKNPGE 168 (312)
T ss_pred HHHHCCCHHH
T ss_conf 9985948667
No 497
>PRK12827 short chain dehydrogenase; Provisional
Probab=94.04 E-value=0.36 Score=24.90 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCCCEEEE--CCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCHHHCCEEEEECCC
Q ss_conf 1347817997--37748999999998479908997199899999997699299978999899984893146799993599
Q gi|254780924|r 445 TDLCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSIST 522 (609)
Q Consensus 445 ~~~~~~vii~--G~g~~g~~~~~~L~~~~~~v~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~ 522 (609)
.+++++++++ |.+.+|+.+++.|.++|.+|++.|.+.++.++..++ ..-..+..-.++..+-.-..|
T Consensus 2 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~-----------~~~~~~~~g~~~~~~~~Dv~~ 70 (251)
T PRK12827 2 ASLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEAEA-----------VAALIEAAGGKALGLAFDVRD 70 (251)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH-----------HHHHHHHCCCEEEEEEECCCC
T ss_conf 898998899968255899999999998799899984888532899999-----------999999649849999903899
Q ss_pred HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6899999999999589880899
Q gi|254780924|r 523 AFEAAYITQEARNSNPSILIIA 544 (609)
Q Consensus 523 ~~~n~~~~~~~~~~~~~~~iia 544 (609)
.+.-......+.+.+.++.+.+
T Consensus 71 ~~~v~~~v~~~~~~~G~iDiLV 92 (251)
T PRK12827 71 FAATRAALDAGVEEFGRLDILV 92 (251)
T ss_pred HHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9999999999999839997999
No 498
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=94.03 E-value=0.36 Score=24.89 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCEEEECCCHHHHHHHHH----CCCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHHHH-HHHHHHHHHHCCCCEEEEEE
Q ss_conf 908997199899999997----6992999789998999848931467999935996899-99999999958988089994
Q gi|254780924|r 472 IALLVIEDSEKKIEELRS----LGIDVIYGNATITKILLMANIEKARSLVVSISTAFEA-AYITQEARNSNPSILIIALA 546 (609)
Q Consensus 472 ~~v~vid~~~~~~~~~~~----~g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~~n-~~~~~~~~~~~~~~~iia~~ 546 (609)
.+|+++|+++-..+-++. .+++++.--.+-.+.++...-.+.|.++.-.+=++.| ...+...|+..|+.++++-+
T Consensus 1 m~vlivDDh~lvr~gl~~ll~~~~~~vv~~~~~~~~~l~~~~~~~pDvvllDl~lp~~~G~~~~~~ir~~~~~~~viv~s 80 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 80 (204)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 98999869899999999999868998999979999999998743979999958999998416788898727980599997
Q ss_pred --CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf --698999999976998787658999999999987421002
Q gi|254780924|r 547 --DSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHHEK 585 (609)
Q Consensus 547 --~~~~~~~~l~~~Ga~~vi~p~~~~a~~~~~~l~~~~~~~ 585 (609)
+++.+.....+.||+..+.... ...++.+.+.......
T Consensus 81 ~~~~~~~~~~a~~~Ga~g~l~K~~-~~~~l~~aI~~v~~G~ 120 (204)
T PRK09958 81 AKNDHFYGKHCADAGANGFVSKKE-GMNNIIAAIEAAKNGY 120 (204)
T ss_pred CCCCCHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHCCC
T ss_conf 246521144335268637997899-9999999999997799
No 499
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436 This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm.
Probab=94.03 E-value=0.12 Score=28.07 Aligned_cols=68 Identities=24% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHC-CCCEEEEC-CCHHH-HHHHHHCCCCEEECCCCCHHHHHHCC----------HHHCCEEEEECC
Q ss_conf 3774899999999847-99089971-99899-99999769929997899989998489----------314679999359
Q gi|254780924|r 455 GYGRIGKVIVQNLKAA-GIALLVIE-DSEKK-IEELRSLGIDVIYGNATITKILLMAN----------IEKARSLVVSIS 521 (609)
Q Consensus 455 G~g~~g~~~~~~L~~~-~~~v~vid-~~~~~-~~~~~~~g~~~~~gd~~~~~~l~~~~----------i~~a~~vi~~~~ 521 (609)
|||.+|.++|+...++ +-+.+.+- .+|+- ...+.+.|+++|........-+|++| +++.|.+|=|||
T Consensus 5 GYGTIGKRVAdAv~kQdDMklvGVtKtsPdfEA~~A~e~Gi~~Y~~~~e~~~~FEeaGi~V~GT~edL~ek~DIvVD~TP 84 (335)
T TIGR01546 5 GYGTIGKRVADAVIKQDDMKLVGVTKTSPDFEAFIAKEKGIDIYVAAEEFLKKFEEAGIKVAGTVEDLLEKVDIVVDATP 84 (335)
T ss_pred CCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHCCCEEECCHHHHHHHCCEEEECCC
T ss_conf 53562224444413699823774116898388888876793264267044312543687044257873104288885687
Q ss_pred C
Q ss_conf 9
Q gi|254780924|r 522 T 522 (609)
Q Consensus 522 ~ 522 (609)
+
T Consensus 85 ~ 85 (335)
T TIGR01546 85 E 85 (335)
T ss_pred C
T ss_conf 8
No 500
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.02 E-value=0.22 Score=26.35 Aligned_cols=55 Identities=27% Similarity=0.443 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHH------------HHHHHHHCCCCEEEC
Q ss_conf 3213478179973774899999999847990899719989------------999999769929997
Q gi|254780924|r 443 QKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEK------------KIEELRSLGIDVIYG 497 (609)
Q Consensus 443 ~~~~~~~~vii~G~g~~g~~~~~~L~~~~~~v~vid~~~~------------~~~~~~~~g~~~~~g 497 (609)
...+...+++|+|.|.+|-++|..+.+.|.+|.+++..+. ..+.++++|++++.+
T Consensus 170 ~l~~~Pk~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~~l~~~D~~~~~~~~~~l~~~gi~i~~~ 236 (464)
T PRK05976 170 SLETLPKSLVVVGGGYIGLEWGSMLRKFGVEVTVVEAADRILPTYDAELTKPVARLLKKLGVRVLTG 236 (464)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 7354895599989968999999999953986999985365543338889999999999769799808
Done!