HHsearch alignment for GI: 254780924 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=97.23 E-value=0.0022 Score=40.19 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=56.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHC--CCCEEECCCCCHHHHHHCCHHHCCEEEEECCCHH
Q ss_conf 7817997377489999999984799-089971998999999976--9929997899989998489314679999359968
Q gi|254780924|r 448 CDHVILVGYGRIGKVIVQNLKAAGI-ALLVIEDSEKKIEELRSL--GIDVIYGNATITKILLMANIEKARSLVVSISTAF 524 (609)
Q Consensus 448 ~~~vii~G~g~~g~~~~~~L~~~~~-~v~vid~~~~~~~~~~~~--g~~~~~gd~~~~~~l~~~~i~~a~~vi~~~~~~~ 524 (609)
T Consensus 12 ~~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~---l~-~~l~~~DivI~aT~s~~ 87 (134)
T pfam01488 12 GKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEALPLDE---LE-ELLAEADIVISATSAPT 87 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECHH---HH-HHHHHCCEEEEECCCCC
T ss_conf 898999996099999999999759988999547578999999984997258985135---44-13631999999259997
Q ss_pred H
Q ss_conf 9
Q gi|254780924|r 525 E 525 (609)
Q Consensus 525 ~ 525 (609)
T Consensus 88 ~ 88 (134)
T pfam01488 88 P 88 (134)
T ss_pred C
T ss_conf 3