RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780924|ref|YP_003065337.1| potassium-efflux system
protein [Candidatus Liberibacter asiaticus str. psy62]
         (609 letters)



>gnl|CDD|34270 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding
           component [Inorganic ion transport and metabolism].
          Length = 408

 Score =  440 bits (1134), Expect = e-124
 Identities = 237/412 (57%), Positives = 309/412 (75%), Gaps = 15/412 (3%)

Query: 1   MTTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIIL 60
           +TTI+ G VLAF+ GA+ANR RL  L+GYL+AG+L GP TPGFVA Q+L P LAE+G+IL
Sbjct: 8   ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVIL 67

Query: 61  LMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIA 120
           LMFGVGLHFS+KDL++V+ IA+PGAL QI L T LG  +  ++GWS G  +VFGLALS+A
Sbjct: 68  LMFGVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVA 127

Query: 121 STVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWT 180
           STVVLL+AL+E ++++T RG+IA+GWLIVEDL +VLALVL+PA A               
Sbjct: 128 STVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALA--------------- 172

Query: 181 SFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVL 240
             + Q       +   + ITL KV AFI +ML+ GRR+IPWIL  +  TGSRELF L VL
Sbjct: 173 GVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVL 232

Query: 241 AIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMM 300
           AIALG A+G+++LFGVS +LGAFFAGM+LAESELS  AA++SLPLRDAF+VLFF+SVGM+
Sbjct: 233 AIALGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGML 292

Query: 301 FNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILA 360
           F+P ILI  P+ ++  ++I++ GK++ AF +V AFG  V TALTI+ASL+QIGEFSFILA
Sbjct: 293 FDPMILIQQPLAVLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILA 352

Query: 361 NLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQSFLVLRFARVTSS 412
            LG++L +LP+  RDL+LA +I+SI+LNPL+F L +  Q        +   S
Sbjct: 353 GLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRYQRSAEWLKEQAAES 404


>gnl|CDD|144551 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family.  Na/H
           antiporters are key transporters in maintaining the pH
           of actively metabolising cells. The molecular mechanisms
           of antiport are unclear. These antiporters contain 10-12
           transmembrane regions (M) at the amino-terminus and a
           large cytoplasmic region at the carboxyl terminus. The
           transmembrane regions M3-M12 share identity with other
           members of the family. The M6 and M7 regions are highly
           conserved. Thus, this is thought to be the region that
           is involved in the transport of sodium and hydrogen
           ions. The cytoplasmic region has little similarity
           throughout the family.
          Length = 371

 Score =  187 bits (477), Expect = 7e-48
 Identities = 111/396 (28%), Positives = 193/396 (48%), Gaps = 33/396 (8%)

Query: 4   IIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVP-ALAEIGIILLM 62
            +   +LA + G +A R  LP ++G ++AGIL+GP   G V    L    LAE+G+  L+
Sbjct: 1   AVLLILLALLAGLLARRLGLPPVVGLILAGILLGPSGLGLVEPDELDLEVLAELGLPFLL 60

Query: 63  FGVGLHFSVKDLISVRGIALPGALIQIILGTALGAL---MGMVMGWSLGGSVVFGLALSI 119
           F  GL   +++L       L  AL+ ++L   L  L   +   +G  L  +++FG ALS 
Sbjct: 61  FLAGLELDLRELRKNGKSILLLALLGVLLPFLLIGLLLALLGGLGIPLLEALLFGAALSA 120

Query: 120 ASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPW 179
            S VV+L  L+E   L T  G + +G  ++ D + V+ L ++ A A              
Sbjct: 121 TSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLALAGVGG---------- 170

Query: 180 TSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWI--LHMIFYTGSRELFRL 237
                             +  LL +   + +  +    V  W+  L   F +G REL  L
Sbjct: 171 ---------------LSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDRELEVL 215

Query: 238 GVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFS-VLFFIS 296
            VLA+AL  A   ++L G+S  LGAF AG++L+    +   +++  P        LFF+ 
Sbjct: 216 LVLALALL-AALLAELLGLSGILGAFLAGLVLSNYAFANELSEKLEPFGYGLFLPLFFVL 274

Query: 297 VGMMFNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFS 356
           VG+  +  +L+S  +L+++ ++ +++GK L  F++    G S+  AL +     Q G  S
Sbjct: 275 VGLSLDLSLLLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREALIVGFGGLQRGAVS 334

Query: 357 FILANLGVELGILPDQARDLILASSIISIILNPLVF 392
             LA +G++LG++  +   L++A  +++ +L PL+ 
Sbjct: 335 LALAAIGLQLGLIDRELYTLLVAVVLLTTLLKPLLK 370


>gnl|CDD|30823 COG0475, KefB, Kef-type K+ transport systems, membrane components
           [Inorganic ion transport and metabolism].
          Length = 397

 Score =  157 bits (398), Expect = 8e-39
 Identities = 134/399 (33%), Positives = 219/399 (54%), Gaps = 32/399 (8%)

Query: 9   VLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFV-ASQSLVPALAEIGIILLMFGVGL 67
           ++A I G +  R  LP ++GYL+AGI++GP     +  S  ++  LAE+G++ L+F +GL
Sbjct: 16  LVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGL 75

Query: 68  HFSVKDLISVRG-IALPGALIQIILGTALGALMG-MVMGWSLGGSVVFGLALSIASTVVL 125
            F ++ L  V   + L  A + +     LG L+   ++G SL  ++  G AL+++ST ++
Sbjct: 76  EFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIV 135

Query: 126 LKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQ 185
           LK L E  +L+T  G++ +G L+ +D+  +L L ++PA A   S                
Sbjct: 136 LKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGS---------------- 179

Query: 186 QMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALG 245
                 G  G I+  LL ++AF+ ++L+ GR ++P +   +  T S ELF L VL + LG
Sbjct: 180 ------GSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLG 233

Query: 246 FAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESL-PLRDAFSV-LFFISVGMMFNP 303
            AY +  L G+S+ LGAF AG++L+ESE  +   +E + P  D   + LFFISVGM  + 
Sbjct: 234 AAYLAE-LLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDL 292

Query: 304 DILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLG 363
            +L+ N +L+++ V + I+GK L A++     G S   AL I   L Q GEF+F+LA + 
Sbjct: 293 GVLLENLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIA 352

Query: 364 VELGILPDQARDLILASSIISIILNPLVFVLAEFLQSFL 402
           +   I       L+ A  I+S+I  P++ +L   L   L
Sbjct: 353 LGSAISE----ALLTAVVILSMITTPILPLLTPILLKRL 387


>gnl|CDD|145418 pfam02254, TrkA_N, TrkA-N domain.  This domain is found in a wide
           variety of proteins. These protein include potassium
           channels, phosphoesterases, and various other
           transporters. This domain binds to NAD.
          Length = 115

 Score = 96.5 bits (241), Expect = 2e-20
 Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANI 510
           +I++GYGR+G+ + + L+  G  ++VI+   +++EELR  G+ V+ G+AT  ++L  A I
Sbjct: 1   IIIIGYGRVGRSLAEELREGGP-VVVIDKDPERVEELREEGVPVVVGDATDEEVLEEAGI 59

Query: 511 EKARSLVVSISTAFEAAYITQEARNSNPSILIIALADSDSEVEHLTRYGADTVVM 565
           E A ++V +         I   AR  NP+  IIA A+     E L R GAD V+ 
Sbjct: 60  EDADAVVAATGDDEANILIVLLARELNPAKKIIARANDPEHAELLRRLGADEVIS 114


>gnl|CDD|36863 KOG1650, KOG1650, KOG1650, Predicted K+/H+-antiporter [Inorganic
           ion transport and metabolism].
          Length = 769

 Score = 70.0 bits (171), Expect = 2e-12
 Identities = 84/428 (19%), Positives = 158/428 (36%), Gaps = 50/428 (11%)

Query: 4   IIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGP----------RTPGFVASQSLVPAL 53
           II   VL+ +   +      P +I  ++AGI++GP           T    +S  ++  L
Sbjct: 28  IILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELL 87

Query: 54  AEIGIILLMFGVGL---------HFSVKDLISVRGIALPGALIQIILGTALGALMGMVMG 104
           A +G +  +F +GL               +I++  + LP  L   +             G
Sbjct: 88  ANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDG 147

Query: 105 --WSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIP 162
             +     +    A SI S  VL + L E ++L ++ G++A+   +V D+   + L L  
Sbjct: 148 ALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALAL 207

Query: 163 AAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWI 222
           A ++                           P   +  L+ V+ F+  +    R ++ WI
Sbjct: 208 AFSSE----------------------LKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWI 245

Query: 223 LHMIFYTGSRELFRLGV-LAIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQE 281
           +             + V L   L  A+ +  + G+    GAF  G+ +       SA  E
Sbjct: 246 IKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIE 305

Query: 282 SL--PLRDAFSVLFFISVGMMFNPDILISNPILLMMAVI-IVIIGKALIAFIVVIAFGRS 338
            L   +      L+F   G+    DI   N    ++  I I    K L      +     
Sbjct: 306 KLEDLVSGLLLPLYFAISGLKT--DISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLP 363

Query: 339 VATALTIAASLSQIGEFSFILANLGVELGILPDQA-RDLILASSIISIILNPLVFVLAEF 397
           +  +L +   +S  G    I+ N G++  IL D+    ++L + + + I  PL+  L + 
Sbjct: 364 LRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDP 423

Query: 398 LQSFLVLR 405
            + +   +
Sbjct: 424 TRKYHGYK 431


>gnl|CDD|31419 COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding
           component [Inorganic ion transport and metabolism].
          Length = 212

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 54/134 (40%), Positives = 82/134 (61%), Gaps = 1/134 (0%)

Query: 446 DLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKIL 505
            L  HVI+VG+GR+G+++ + L A+GI ++VI+  E ++E LR LG+ V+ G+AT  ++L
Sbjct: 19  RLKRHVIIVGFGRVGQIVARALLASGIPVVVIDSDEDRVELLRELGLLVVLGDATREEVL 78

Query: 506 LMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALADS-DSEVEHLTRYGADTVV 564
             A IE+AR+++V++S      +I   AR  NP + I+A A   D  VE LT  GAD VV
Sbjct: 79  EAAGIERARAVIVTLSDDATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADEVV 138

Query: 565 MSAREIALGMLDRL 578
               E AL +    
Sbjct: 139 PPTFESALLLARAA 152


>gnl|CDD|30915 COG0569, TrkA, K+ transport systems, NAD-binding component
           [Inorganic ion transport and metabolism].
          Length = 225

 Score = 62.2 bits (151), Expect = 5e-10
 Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGID--VIYGNATITKILLMA 508
           +I++G GR+G+ + + L   G  +++I+  E+++EE  +  +D  V+ G+AT   +L  A
Sbjct: 3   IIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA 62

Query: 509 NIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALADSDSEVEHLTRYGADTVVMSAR 568
            I+ A ++V +       + +   A        +IA A +    + L + GAD ++   +
Sbjct: 63  GIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEK 122

Query: 569 EIALGMLDRLNQ 580
             A  +   +  
Sbjct: 123 LAAKRLARLIVT 134


>gnl|CDD|37228 KOG2017, KOG2017, KOG2017, Molybdopterin synthase sulfurylase
           [Coenzyme transport and metabolism].
          Length = 427

 Score = 38.4 bits (89), Expect = 0.006
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 18/166 (10%)

Query: 434 ILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGID 493
           IL +  V  Q +     V++VG G +G    Q L AAG+  L I D +    EL +L   
Sbjct: 52  ILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVV--ELSNLHRQ 109

Query: 494 VIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILI----IALADSD 549
           V++  A +     M   E A + +  +++  E     +   +SN   +I    + L  +D
Sbjct: 110 VLHTEARVG----MHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTD 165

Query: 550 SEVEHLTRYG-ADTVVMSAREI----ALGMLDRLNQVHHEKVTCDR 590
           +     TRY  +D  V+  + +    AL    +L   ++    C R
Sbjct: 166 NV---PTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNNGPCYR 208


>gnl|CDD|30375 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
           ion transport and metabolism].
          Length = 429

 Score = 37.6 bits (87), Expect = 0.010
 Identities = 60/334 (17%), Positives = 128/334 (38%), Gaps = 33/334 (9%)

Query: 1   MTTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLV--PALAEIGI 58
           +  ++   +L  +   +A R  LP +   L+ G+L GP     ++    +       + +
Sbjct: 8   LFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFL 67

Query: 59  ILLMFGVGLHFSVKDLISVRGIALPGALIQIILGTAL--GALMGMVMGWSLGGSVVFGLA 116
            +L+F  GL   +++L  V    L  AL  +++           ++ G  L  + + G  
Sbjct: 68  AILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAI 127

Query: 117 LSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMT 176
           LS    V +    +  R+ +  R  +    L+ + + IVL  V +               
Sbjct: 128 LSPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLFKVAL--------------- 172

Query: 177 HPWTSFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFR 236
               + +     F +G   L+ +        +G++L +    +   L    +T S  L  
Sbjct: 173 ----AALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWT-SPLLET 227

Query: 237 LGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAF------- 289
           L  L +A   AY  ++  GVS  L    AG++L E+     +   +     +F       
Sbjct: 228 LLTLLLAFA-AYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFL 286

Query: 290 -SVLFFISVGMMFNPDILISNPILLMMAVIIVII 322
            + L F+ +G      +L++  +L ++  ++ ++
Sbjct: 287 LNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVL 320


>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related
           proteins.  Cinnamyl alcohol dehydrogenases (CAD),
           members of the medium chain dehydrogenase/reductase
           family, reduce cinnamaldehydes to cinnamyl alcohols in
           the last step of monolignal metabolism in plant cells
           walls. CAD binds 2 zinc ions and is NADPH- dependent.
           CAD family members are also found in non-plant species,
           e.g. in yeast where they have an aldehyde reductase
           activity. The medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes, or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins  typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 330

 Score = 36.5 bits (85), Expect = 0.022
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDV 494
           + V ++G G +G + VQ  +A G   + I  S  K E  R LG D 
Sbjct: 164 ERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADE 209


>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases.  This
           group contains proteins identified as sorbitol
           dehydrogenases and other sugar dehydrogenases of the
           medium-chain dehydrogenase/reductase family (MDR), which
           includes zinc-dependent alcohol dehydrogenase and
           related proteins. Sorbitol and aldose reductase are
           NAD(+) binding proteins of the polyol pathway, which
           interconverts glucose and fructose. Sorbitol
           dehydrogenase is tetrameric and has a single catalytic
           zinc per subunit. NAD(P)(H)-dependent oxidoreductases
           are the major enzymes in the interconversion of alcohols
           and aldehydes, or ketones. Related proteins include
           threonine dehydrogenase, formaldehyde dehydrogenase, and
           butanediol dehydrogenase. The medium chain alcohol
           dehydrogenase family (MDR) has a NAD(P)(H)-binding
           domain in a Rossmann fold of a beta-alpha form. The
           N-terminal region typically has an all-beta catalytic
           domain. These proteins typically form dimers (typically
           higher plants, mammals) or tetramers (yeast, bacteria),
           and have 2 tightly bound zinc atoms per subunit. Horse
           liver alcohol dehydrogenase is a dimeric enzyme and each
           subunit has two domains. The NAD binding domain is in a
           Rossmann fold and the catalytic domain contains a zinc
           ion to which substrates bind. There is a cleft between
           the domains that closes upon formation of the ternary
           complex.
          Length = 343

 Score = 36.4 bits (85), Expect = 0.023
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 449 DHVILVGYGRIGKVIVQNLKAAGIA-LLVIEDSEKKIEELRSLGIDVIY 496
           D V+++G G IG + +Q LK  G   ++ ++  ++K+   R LG D   
Sbjct: 161 DTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTI 209


>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           This group contains members identified as related to
           zinc-dependent alcohol dehydrogenase and other members
           of the MDR family, including threonine dehydrogenase.
           The medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group includes
           various activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones. Active site zinc has a
           catalytic role, while structural zinc aids in stability.
            ADH-like proteins typically form dimers (typically
           higher plants, mammals) or tetramers (yeast, bacteria),
           and generally have 2 tightly bound zinc atoms per
           subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 319

 Score = 35.7 bits (83), Expect = 0.035
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 434 ILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGID 493
           ILEQ  +T       D V ++G G++G +I Q L   G  ++++    +K+   R LG++
Sbjct: 147 ILEQVPITPG-----DKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVE 201

Query: 494 VI 495
            +
Sbjct: 202 TV 203


>gnl|CDD|30635 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and
           metabolism].
          Length = 279

 Score = 34.6 bits (79), Expect = 0.082
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 4/117 (3%)

Query: 448 CDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLM 507
              V +VG G +G  + + LK AG+ + +I           +L + VI     +T   L 
Sbjct: 3   SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVID---ELTVAGLA 59

Query: 508 ANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALADSDSEV-EHLTRYGADTV 563
               +A  ++V++        + + A +     ++  +    S V E + +Y    V
Sbjct: 60  EAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV 116


>gnl|CDD|35246 KOG0023, KOG0023, KOG0023, Alcohol dehydrogenase, class V
           [Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 360

 Score = 34.1 bits (78), Expect = 0.11
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEE-LRSLGIDV 494
             V +VG G +G + VQ  KA G+ + VI  S KK EE ++SLG DV
Sbjct: 183 KWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADV 229


>gnl|CDD|31264 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General
           function prediction only].
          Length = 339

 Score = 33.6 bits (77), Expect = 0.15
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIY 496
             V +VG G +G + VQ  KA G  ++ I  SE+K+E  + LG D + 
Sbjct: 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVI 215


>gnl|CDD|73271 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1.
           Aos1 is part of the heterodimeric activating enzyme
           (E1), specific for the SUMO family of ubiquitin-like
           proteins (Ubls). E1 enzymes are part of a conjugation
           cascade to attach Ub or Ubls, covalently to substrate
           proteins consisting of activating (E1), conjugating
           (E2), and/or ligating (E3) enzymes. E1 activates
           ubiquitin by C-terminal adenylation, and subsequently
           forms a highly reactive thioester bond between its
           catalytic cysteine and Ubls C-terminus. The E1 also
           associates with E2 and promotes ubiquitin transfer to
           the E2's catalytic cysteine. Post-translational
           modification by SUMO family of ubiquitin-like proteins
           (Ublps) is involved in cell division, nuclear transport,
           the stress response and signal transduction. Aos1
           contains part of the adenylation domain..
          Length = 197

 Score = 30.9 bits (70), Expect = 0.93
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 443 QKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATIT 502
           QK      ++L+G   +G  I +NL  +GI  L I D     EE   LG   +     + 
Sbjct: 16  QKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEE--DLGAQFLIPAEDLG 73

Query: 503 KILLMANIEKARSLVVSISTAFEAAYITQEA 533
           +    A++E+ R+L   +  + +   I+++ 
Sbjct: 74  QNRAEASLERLRALNPRVKVSVDTDDISEKP 104


>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase.  L-threonine
           dehydrogenase (TDH) catalyzes the zinc-dependent
           formation of 2-amino-3-ketobutyrate from L-threonine,
           via NAD(H)-dependent oxidation.  THD is a member of the
           zinc-requiring, medium chain NAD(H)-dependent alcohol
           dehydrogenase family (MDR). MDRs  have a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
           the major enzymes in the interconversion of alcohols and
           aldehydes, or ketones. The N-terminal region typically
           has an all-beta catalytic domain. These proteins
           typically form dimers (typically higher plants, mammals)
           or tetramers (yeast, bacteria),  and have 2 tightly
           bound zinc atoms per subunit. Sorbitol and aldose
           reductase are NAD(+) binding proteins of the polyol
           pathway, which interconverts glucose and fructose.
          Length = 334

 Score = 31.0 bits (71), Expect = 0.99
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 449 DHVILVGYGRIGKVIVQNLKAAGIA-LLVIEDSEKKIEELRSLGIDVIY 496
           D V++ G G IG ++ Q LK  G + + V E +E+K+E  + LG     
Sbjct: 161 DSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETV 209


>gnl|CDD|34564 COG4956, COG4956, Integral membrane protein (PIN domain
           superfamily) [General function prediction only].
          Length = 356

 Score = 31.0 bits (70), Expect = 1.0
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 289 FSVLFFISVGMMFNPDIL----ISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALT 344
             ++    +G    P++L    I +   L    +  +IG A+I F++   FG+ V   L 
Sbjct: 9   LFIIIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIG-AIIFFLISFWFGKYVLNWLK 67

Query: 345 -IAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQSFLV 403
            +   + ++   + +   +G+ +G+L        L    I  I + ++ V+   + ++  
Sbjct: 68  RLEEQIRKLPVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFI-STIIPVILTIILAYFG 126

Query: 404 LRFA 407
            + A
Sbjct: 127 FQLA 130


>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 289

 Score = 30.2 bits (68), Expect = 1.7
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 299 MMFNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFI 358
           +M   DI ++ P LL+  +++ I+G  L+  I+ +A       A  +   +  + E  ++
Sbjct: 121 LMRITDIFLAFPSLLLAILLVAILGPGLLNLILALALVGWPGYARIVRGQVLSLREREYV 180

Query: 359 LA 360
            A
Sbjct: 181 EA 182


>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA
           dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase,
           and other MDR family members.  This group contains
           enzymes of the zinc-dependent alcohol dehydrogenase
           family, including members (aka MDR) identified as
           6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and
           N-benzyl-3-pyrrolidinol dehydrogenase.
           6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase
           catalyzes the conversion of
           6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to
           6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This
           group displays the characteristic catalytic and
           structural zinc sites of the zinc-dependent alcohol
           dehydrogenases. NAD(P)(H)-dependent oxidoreductases are
           the major enzymes in the interconversion of alcohols and
           aldehydes, or ketones.  Alcohol dehydrogenase in the
           liver converts ethanol and NAD+ to acetaldehyde and
           NADH, while in yeast and some other microorganisms ADH
           catalyzes the conversion acetaldehyde to ethanol in
           alcoholic fermentation. ADH is a member of the medium
           chain alcohol dehydrogenase family (MDR), which have a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form.  The NAD(H)-binding region is comprised
           of 2 structurally similar halves, each of which contacts
           a mononucleotide. A GxGxxG motif after the first
           mononucleotide contact half allows the close contact of
           the coenzyme with the ADH backbone. The N-terminal
           catalytic domain has a distant homology to GroES. These
           proteins typically form dimers (typically higher plants,
           mammals) or tetramers (yeast, bacteria), and have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site and a structural zinc in a lobe of
           the catalytic domain. NAD(H)-binding occurs in the cleft
           between the catalytic  and coenzyme-binding domains at
           the active site, and coenzyme binding induces a
           conformational closing of this cleft. Coenzyme binding
           typically precedes and contributes to substrate binding.
           In human ADH catalysis, the zinc ion helps coordinate
           the alcohol, followed by deprotonation of  a histidine,
           the ribose of NAD, a serine, then the alcohol, which
           allows the transfer of a hydride to NAD+, creating NADH
           and a zinc-bound aldehyde or ketone. In yeast and some
           bacteria, the active site zinc binds an aldehyde,
           polarizing it, and leading to the reverse reaction.
          Length = 338

 Score = 29.5 bits (67), Expect = 2.5
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMANI 510
           V+++G G +G   VQ  KA G A++ ++  E+K+E  + LG D +  +   +     A  
Sbjct: 169 VLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAA- 227

Query: 511 EKARSLVVSISTAFEAA 527
                L       F+  
Sbjct: 228 ----GLGGGFDVIFDFV 240


>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           The medium chain reductase/dehydrogenases
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases  (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH) , quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones. ADH-like proteins
           typically form dimers (typically higher plants, mammals)
           or tetramers (yeast, bacteria), and generally have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site and a structural zinc in a lobe of
           the catalytic domain. The active site zinc is
           coordinated by a histidine, two cysteines, and a water
           molecule. The second zinc seems to play a structural
           role, affects subunit interactions, and is typically
           coordinated by 4 cysteines. Other MDR members have only
           a catalytic zinc, and some contain no coordinated zinc.
          Length = 271

 Score = 29.6 bits (67), Expect = 2.8
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGID 493
           D V+++G G +G +  Q  KAAG  ++V + S++K+E  + LG D
Sbjct: 136 DTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD 180


>gnl|CDD|107344 cd06349, PBP1_ABC_ligand_binding_like_14, Type I periplasmic
           ligand-binding domain of uncharacterized ABC (Atpase
           Binding Cassette)-type active transport systems.  This
           subgroup includes the type I periplasmic ligand-binding
           domain of uncharacterized ABC (Atpase Binding
           Cassette)-type active transport systems that are
           predicted to be involved in the uptake of amino acids,
           peptides, or inorganic ions. This subgroup has high
           sequence similarity to members of the family of
           hydrophobic amino acid transporters (HAAT), such as
           leucine/isoleucine/valine binding protein (LIVBP);
           however its ligand specificity has not been determined
           experimentally.
          Length = 340

 Score = 29.3 bits (66), Expect = 3.2
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA 508
           D +IL+ Y   G  I +  +A G+ + V+  S     +   LG D + G  T T      
Sbjct: 192 DAIILISYYNDGAPIARQARAVGLDIPVVASSSVYSPKFIELGGDAVEGVYTPTAFFPGD 251

Query: 509 NIEKARSLVVSISTAFEAAYITQ 531
              + +S V    +A+EA Y  Q
Sbjct: 252 PRPEVQSFV----SAYEAKYGAQ 270


>gnl|CDD|30949 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent
           oxidoreductases [Energy production and conversion /
           General function prediction only].
          Length = 326

 Score = 29.2 bits (65), Expect = 3.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVI 495
           ++    G +G   +Q  KA G  ++ +  S +K+E L+ LG D +
Sbjct: 147 LVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHV 191


>gnl|CDD|35574 KOG0353, KOG0353, KOG0353, ATP-dependent DNA helicase [General
           function prediction only].
          Length = 695

 Score = 29.0 bits (64), Expect = 3.5
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 426 KQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAA---GIALLV---IED 479
           K++  +E     Q   I  T   +   L+     GK +   L A    G AL++   I  
Sbjct: 87  KEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISL 146

Query: 480 SEKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPS 539
            E +I +L+ LGID    NA  +K       ++  + + +  + F+  Y+T E      S
Sbjct: 147 MEDQILQLKQLGIDASMLNANSSK----EEAKRVEAAITNKDSEFKLIYVTPEKIAK--S 200

Query: 540 ILIIALADSDSEVEHLTRYGADTV 563
              +   +   E         D V
Sbjct: 201 KKFMNKLEKALEAGFFKLIAIDEV 224


>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase. 
           (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
           medium chain alcohol dehydrogenase, catalyzes the
           NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
           meso-butanediol to acetoin. BDH functions as a
           homodimer.  NAD(P)(H)-dependent oxidoreductases are the
           major enzymes in the interconversion of alcohols and
           aldehydes, or ketones.  The medium chain alcohol
           dehydrogenase family (MDR) have a NAD(P)(H)-binding
           domain in a Rossmann fold of a beta-alpha form. The
           N-terminal region typically has an all-beta catalytic
           domain. These proteins typically form dimers (typically
           higher plants, mammals) or tetramers (yeast, bacteria),
           and have 2 tightly bound zinc atoms per subunit.
           Sorbitol and aldose reductase are NAD(+) binding
           proteins of the polyol pathway, which interconverts
           glucose and fructose. Sorbitol dehydrogenase is
           tetrameric and has a single catalytic zinc per subunit.
          Length = 351

 Score = 28.7 bits (65), Expect = 5.3
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 449 DHVILVGYGRIGKVIVQNLKAAGIA-LLVIEDSEKKIEELRSLGIDVIY 496
           D  +++G G IG + +  LKAAG + ++V E SE + E    LG  ++ 
Sbjct: 174 DTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVL 222


>gnl|CDD|31311 COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid
           transport and metabolism].
          Length = 431

 Score = 28.6 bits (64), Expect = 5.6
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)

Query: 3   TIIWGFVL-AFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILL 61
            I  GF+L A  FGA       P ++G   AG  V P   GF+ +   +P L   GII +
Sbjct: 7   IIALGFMLFALFFGA--GNLIFPPMLGLH-AGEHVWPAILGFLLTGVGLPLL---GIIAV 60

Query: 62  MFGVGLHFSVKDLISVR-GIALPGALIQII---LGTALGALMGMVMGWSLGGSVVFGLAL 117
               G   S+   I    G+    A+   I           +   +G S         +L
Sbjct: 61  ALYGGGVESLATRIGPWFGVLFAIAIYLSIGPFFAIPRTGAVSFEVGISPLLGDSSLPSL 120

Query: 118 SIAST----VVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPS 173
            I S     +  L +L  +++++   GK     L+V  L+I++   +IP A    +A  +
Sbjct: 121 FIFSVIFFAIAYLFSLNPSKLIDR-VGKFLTPILLVL-LLILVIAAIIPPAGPISAASGA 178

Query: 174 SMTHPWTS 181
             + P++ 
Sbjct: 179 YQSQPFSK 186


>gnl|CDD|30111 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like
           enzymes involved in molybdopterin and thiamine
           biosynthesis family. The common reaction mechanism
           catalyzed by MoeB and ThiF, like other E1 enzymes,
           begins with a nucleophilic attack of the C-terminal
           carboxylate of MoaD and ThiS, respectively, on the
           alpha-phosphate of an ATP molecule bound at the active
           site of the activating enzymes, leading to the formation
           of a high-energy acyladenylate intermediate and
           subsequently to the formation of  a thiocarboxylate at
           the C termini of MoaD and ThiS. MoeB, as the MPT
           synthase (MoaE/MoaD complex) sulfurase, is involved in
           the biosynthesis of the molybdenum cofactor, a
           derivative of the tricyclic pterin, molybdopterin (MPT).
           ThiF catalyzes the adenylation of ThiS, as part of the
           biosynthesis pathway of thiamin pyrophosphate (vitamin
           B1). .
          Length = 228

 Score = 28.5 bits (64), Expect = 5.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATI 501
            V++VG G +G    + L AAG+  L + D +  + EL +L   +++  A +
Sbjct: 23  RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD--VVELSNLQRQILHTEADV 72


>gnl|CDD|31226 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase
           [Carbohydrate transport and metabolism].
          Length = 300

 Score = 28.3 bits (63), Expect = 5.8
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 453 LVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGI 492
           ++G GR+G  +V+ L   G  ++  + ++  +EEL+  G 
Sbjct: 5   MIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGA 44


>gnl|CDD|144461 pfam00875, DNA_photolyase, DNA photolyase.  This domain binds a
           light harvesting cofactor.
          Length = 164

 Score = 28.3 bits (64), Expect = 5.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 465 QNLKAAGIALLVIE-DSEKKIEEL-RSLGIDVIYGN 498
           ++L   GI L+V   D  + + EL + LG   +Y N
Sbjct: 60  ESLAKLGIPLIVRRGDPAEVLPELAKELGASAVYWN 95


>gnl|CDD|35292 KOG0069, KOG0069, KOG0069, Glyoxylate/hydroxypyruvate reductase
           (D-isomer-specific 2-hydroxy acid dehydrogenase
           superfamily) [Energy production and conversion].
          Length = 336

 Score = 28.4 bits (63), Expect = 6.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDV 494
           V ++G GRIGK I + LK  G  +L    ++   EE      + 
Sbjct: 165 VGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEF 208


>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family.
           NAD(P)(H)-dependent oxidoreductases are the major
           enzymes in the interconversion of alcohols and
           aldehydes, or ketones. This group contains proteins that
           share the characteristic catalytic and structural
           zinc-binding sites of the zinc-dependent alcohol
           dehydrogenase family.  Alcohol dehydrogenase in the
           liver converts ethanol and NAD+ to acetaldehyde and
           NADH, while in yeast and some other microorganisms ADH
           catalyzes the conversion acetaldehyde to ethanol in
           alcoholic fermentation. ADH is a member of the medium
           chain alcohol dehydrogenase family (MDR), which have a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form.  The NAD(H)-binding region is comprised
           of 2 structurally similar halves, each of which contacts
           a mononucleotide. A GxGxxG motif after the first
           mononucleotide contact half allows the close contact of
           the coenzyme with the ADH backbone. The N-terminal
           catalytic domain has a distant homology to GroES. These
           proteins typically form dimers (typically higher plants,
           mammals) or tetramers (yeast, bacteria), and have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site and a structural zinc in a lobe of
           the catalytic domain. NAD(H)-binding occurs in the cleft
           between the catalytic and coenzyme-binding domains at
           the active site, and coenzyme binding induces a
           conformational closing of this cleft. Coenzyme binding
           typically precedes and contributes to substrate binding.
           In human ADH catalysis, the zinc ion helps coordinate
           the alcohol, followed by deprotonation of  a histidine
           (His-51), the ribose of NAD, a serine (Ser-48), then the
           alcohol, which allows the transfer of a hydride to NAD+,
           creating NADH and a zinc-bound aldehyde or ketone. In
           yeast and some bacteria, the active site zinc binds an
           aldehyde, polarizing it, and leading to the reverse
           reaction.
          Length = 332

 Score = 28.4 bits (64), Expect = 6.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVI 495
           ++    G +G   +Q  KA G  ++ +  S +K++ L+ LG D +
Sbjct: 167 LVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYV 211


>gnl|CDD|144913 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family.  This
           family consists of the 116kDa V-type ATPase (vacuolar
           (H+)-ATPases) subunits, as well as V-type ATP synthase
           subunit i. The V-type ATPases family are proton pumps
           that acidify intracellular compartments in eukaryotic
           cells for example yeast central vacuoles,
           clathrin-coated and synaptic vesicles. They have
           important roles in membrane trafficking processes. The
           116kDa subunit (subunit a) in the V-type ATPase is part
           of the V0 functional domain responsible for proton
           transport. The a subunit is a transmembrane glycoprotein
           with multiple putative transmembrane helices it has a
           hydrophilic amino terminal and a hydrophobic carboxy
           terminal. It has roles in proton transport and assembly
           of the V-type ATPase complex. This subunit is encoded by
           two homologous gene in yeast VPH1 and STV1.
          Length = 707

 Score = 28.1 bits (63), Expect = 7.2
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 19/177 (10%)

Query: 234 LFRLGVLAIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPL-RDAFSVL 292
           L  +GV +I  GF Y     FG SL++  F +G +      S      +       F + 
Sbjct: 404 LLLMGVFSIYTGFIYND--CFGKSLNI--FGSGWLWPVMIKSGETLTLAPHEGPYPFGID 459

Query: 293 FFISVGMMFNPDILISNPILLMMAVIIVIIGKA---LIAFIVVIAFGRSVATALTIAASL 349
              +        +L  N   + +++I+ +I       + F   + F   +       A +
Sbjct: 460 PEWNGV---ENKLLFLNSYKMKLSIILGVIHMTFGLFLGFFNHVKFKSKID---IKDAFI 513

Query: 350 SQIGEFSFILANLG-VELGILPDQARDLILASSIISIILNPLVFV-LAEFLQSFLVL 404
            Q+   S+++   G + + I+     D    S     +L  L+ + L   +Q FLV+
Sbjct: 514 PQL---SWLIIIFGYLVILIIYKWLVDWAKTSKPAPSLLIGLINMFLFPGVQVFLVV 567


>gnl|CDD|32044 COG1859, KptA, RNA:NAD 2'-phosphotransferase [Translation,
           ribosomal structure and biogenesis].
          Length = 211

 Score = 27.9 bits (62), Expect = 7.4
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 27/117 (23%)

Query: 455 GYGRIGKVIVQNLKA---AGIALL--VIEDSEKKIEELRSLGIDVIYG----------NA 499
           G+  I +++    KA       LL  V+   +K   EL+   I   YG           A
Sbjct: 58  GWADIDELLEGLRKAGRWLTRELLLAVVATDDKGRFELKEGKIRARYGHSIPVDLRLPEA 117

Query: 500 TITKILLMANIEKARSLV------------VSISTAFEAAYITQEARNSNPSILIIA 544
               +L      +    +            V +S  +E A       + +P +L I 
Sbjct: 118 EPPAVLYHGTSPEFLPSILEEGLKPMKRRHVHLSADYETAKQVGLRHSGSPVVLEID 174


>gnl|CDD|30845 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme
           metabolism].
          Length = 420

 Score = 27.9 bits (62), Expect = 7.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDV 494
           V++ GYG +G+ I   L+  G  ++V E    +  E    G  V
Sbjct: 212 VVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRV 255


>gnl|CDD|36584 KOG1370, KOG1370, KOG1370, S-adenosylhomocysteine hydrolase
           [Coenzyme transport and metabolism].
          Length = 434

 Score = 28.0 bits (62), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 451 VILVGYGRIGKVIVQNLKAAGIALLVIE 478
            ++ GYG +GK   Q LK  G  ++V E
Sbjct: 217 AVVCGYGDVGKGCAQALKGFGARVIVTE 244


>gnl|CDD|32775 COG2954, COG2954, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 156

 Score = 27.6 bits (61), Expect = 9.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 252 KLFGVSLSLGAFFAGMILAESELSQSAAQESLP 284
            L+ V + LG   AG+++AE EL    A   LP
Sbjct: 97  FLWEVDVFLGDN-AGLVVAEVELPDENADFDLP 128


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.326    0.140    0.392 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,001,269
Number of extensions: 405656
Number of successful extensions: 2627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2497
Number of HSP's successfully gapped: 395
Length of query: 609
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 510
Effective length of database: 4,124,446
Effective search space: 2103467460
Effective search space used: 2103467460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)