RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780924|ref|YP_003065337.1| potassium-efflux system
protein [Candidatus Liberibacter asiaticus str. psy62]
(609 letters)
>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein;
Provisional.
Length = 558
Score = 569 bits (1469), Expect = e-163
Identities = 288/579 (49%), Positives = 395/579 (68%), Gaps = 38/579 (6%)
Query: 1 MTTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIIL 60
+TTI+ G VLAFI G +ANR R+ L+GYL+AG+L GP TPGFVA L P LAE+G+IL
Sbjct: 8 ITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVIL 67
Query: 61 LMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIA 120
LMFGVGLHFS+KDL++V+ IA+PGA+ QI + T LG + V+GWSL +VFGL LS A
Sbjct: 68 LMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTA 127
Query: 121 STVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWT 180
STVVLL+AL+E +++++ RG+IA+GWLIVEDL++VL LVL+PA A
Sbjct: 128 STVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFA---- 183
Query: 181 SFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVL 240
+ ++G IT+ KV+AFI +M++ GRR++PWIL TGSRELF L VL
Sbjct: 184 -----TLAVDLG------ITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLSVL 232
Query: 241 AIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMM 300
A+ALG A+G+ +LF VS +LGAFFAGM+L ESELS AA ++LPLRDAF+VLFF+SVGM+
Sbjct: 233 ALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGML 292
Query: 301 FNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILA 360
F+P ILI P+ ++ + I++ GK+L AF +V FG S TALTIAASL+QIGEF+FILA
Sbjct: 293 FDPMILIQQPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILA 352
Query: 361 NLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQSFLVLRFARVTSSTEQYSHIC 420
LG+ L +LP ++L+LA +I+SI+LNP++F L E R + TE
Sbjct: 353 GLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLE-----------RYLAKTETLEEQT 401
Query: 421 VEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS 480
+E E+I E++++ + D+C+H +LVGYGR+G ++ + L AAGI L+VIE S
Sbjct: 402 LE---------EAIEEEKQIPV---DICNHALLVGYGRVGSLLGEKLLAAGIPLVVIETS 449
Query: 481 EKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSI 540
+++ELR GI + GNA +I+ +A+++ AR L+++I +EA I AR P I
Sbjct: 450 RTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDI 509
Query: 541 LIIALADSDSEVEHLTRYGADTVVMSAREIALGMLDRLN 579
IIA A D EV ++T GA+ VVM REIA ML+ L
Sbjct: 510 EIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLE 548
>gnl|CDD|162117 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2
(CPA2) family.
Length = 273
Score = 191 bits (487), Expect = 6e-49
Identities = 96/296 (32%), Positives = 164/296 (55%), Gaps = 24/296 (8%)
Query: 8 FVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGL 67
+ A + ++ R +P+++GYL+AG+L+GP G +++ V LAE G+ILLMF +GL
Sbjct: 1 LLAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGL 60
Query: 68 HFSVKDLISVRGIALPGALIQIIL-GTALGALMGMVMGWSLGGSVVFGLALSIASTVVLL 126
++ L +R A ++Q+++ G LG L+G ++G +LG +VV G+ L+++ST V++
Sbjct: 61 ELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVV 120
Query: 127 KALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQ 186
+ L+E +L+T G+ +G L+ +D+ +V L L+P AT+ S E
Sbjct: 121 QVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTE--------------- 165
Query: 187 MGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGF 246
+ + LLKV ++++ GR ++ +L + ELF G L + G
Sbjct: 166 -------HVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGS 218
Query: 247 AYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMMFN 302
AY + L G+S++LGAF AG++L+ESE + P+ LFFISVGM +
Sbjct: 219 AY-FADLLGLSMALGAFLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273
>gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system
protein KefB; Provisional.
Length = 601
Score = 188 bits (479), Expect = 4e-48
Identities = 156/573 (27%), Positives = 270/573 (47%), Gaps = 62/573 (10%)
Query: 9 VLAFIFGA-----IANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMF 63
+ F+F A +A R + ++GYL+AGI +GP GF++ + +E+G++ LMF
Sbjct: 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMF 69
Query: 64 GVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIASTV 123
+GL + L +R Q++L A+ A + M+ +S +VV G+ L+++ST
Sbjct: 70 IIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTA 129
Query: 124 VLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFI 183
+ L+ ++E + ++ G++ L+ +DL ++ AL L+P A + W
Sbjct: 130 MALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFD-----W---- 180
Query: 184 TQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIA 243
M +KV+AF G MLI GR ++ + I +G RE+F L +
Sbjct: 181 --------------MKIGMKVLAFAG-MLIGGRYLLRPLFRFIAASGVREVFTAAALLLV 225
Query: 244 LGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMMFNP 303
LG A L G+S++LG F AG++LAESE P + LFFISVGM N
Sbjct: 226 LGSALFMDAL-GLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNL 284
Query: 304 DILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLG 363
+L ++ + ++++V++++ K L+ +++ +G + + A LSQ GEF+F+L +
Sbjct: 285 GVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAA 344
Query: 364 VELGILPDQARDLILASSIISIILNPLVFVLAEFLQSFLVLRFARVTSSTEQYSHICVEQ 423
+L L+L +S++ PL+ L + +L R E+ VE
Sbjct: 345 SSQRLLQGDQMALLLVVVTLSMMTTPLLMKL---IDKWLARRLNGPEEEDEKPW---VED 398
Query: 424 DTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKK 483
D Q VI+VG+GR G+VI + L A + + V+E
Sbjct: 399 DKPQ-----------------------VIIVGFGRFGQVIGRLLMANKMRITVLERDISA 435
Query: 484 IEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILII 543
+ +R G V YG+AT ++L A EKA ++V++ + + I + + P + I+
Sbjct: 436 VNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHIL 495
Query: 544 ALADSDSEVEHLTRYGADTVVMSAREIALGMLD 576
A A E L + G +RE L+
Sbjct: 496 ARARGRVEAHELLQAGVTQF---SRETFSSALE 525
>gnl|CDD|179594 PRK03562, PRK03562, glutathione-regulated potassium-efflux system
protein KefC; Provisional.
Length = 621
Score = 173 bits (440), Expect = 1e-43
Identities = 142/567 (25%), Positives = 253/567 (44%), Gaps = 72/567 (12%)
Query: 17 IANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFSVKDLIS 76
IA R L +++GYL+AG ++GP V + AE G++L++F +GL + L
Sbjct: 23 IAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWK 82
Query: 77 VRGIALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIASTVVLLKALQENRILE 136
+R G +Q++ L L M++G +++ GL L+++ST + ++A+ E ++
Sbjct: 83 LRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMV 142
Query: 137 TDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMGFEVGMPGL 196
T G+ A L+ +D+ + + +IP A S +++
Sbjct: 143 TQMGRSAFAILLFQDIAAIPLVAMIPLLAA--SGASTTLGAFA----------------- 183
Query: 197 IMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIALGFAYGSSKLF-- 254
++ LKV + ++++ GR V L + +G RE+F A+AL +G L
Sbjct: 184 --LSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFT----AVALFLVFGFGLLMEE 237
Query: 255 -GVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMMFNPDILISNP--I 311
G+S++LGAF AG++LA SE + + P + LFFI+VGM + L+ NP I
Sbjct: 238 VGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRI 297
Query: 312 LLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILANLGVELGILPD 371
L+++ + I K + +++ G A L Q GEF+F++ +L
Sbjct: 298 LILLLGFLAI--KIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEP 355
Query: 372 QARDLILASSIISIILNPLVFVLAEFLQSFLVLRFARVTSSTEQYSHICVEQDTKQEVPV 431
+ L+ + +S+ PL+ VL + L R +
Sbjct: 356 EWAKLLTLAVALSMAATPLLLVLLDRL---EQSRTE-------------------EAREA 393
Query: 432 ESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLG 491
+ I EQQ VI+ G+GR G+++ + L ++G+ + V++ IE LR G
Sbjct: 394 DEIDEQQ----------PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFG 443
Query: 492 IDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALADS--- 548
+ V YG+AT +L A KA L+ +I + + + + P + IIA A
Sbjct: 444 MKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARARDVDH 503
Query: 549 -----DSEVEHLTRYGADTVVMSAREI 570
+ VE R + + S R +
Sbjct: 504 YIRLRQAGVEKPERETFEGALKSGRLV 530
>gnl|CDD|178704 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional.
Length = 832
Score = 52.6 bits (126), Expect = 3e-07
Identities = 86/395 (21%), Positives = 164/395 (41%), Gaps = 53/395 (13%)
Query: 22 RLPTLIGYLVAGILVGPRTPGFVA----------SQSLVPALAEIGIILLMFGVGLHFSV 71
R P +I ++ G+++GP G S ++ +A +G++ +F VG+ +
Sbjct: 66 RQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDI 125
Query: 72 KDLISVRG-----IALPGALIQIILGTALGALMGMVMGWSLGGSVVF--GLALSIASTVV 124
+I G IA+ G + +G A + V G+ + G+ALS+ + V
Sbjct: 126 -SVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPV 184
Query: 125 LLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFIT 184
L + L E +++ T+ G+IA+ +V D+ + L L A A N S +S+ W
Sbjct: 185 LARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASL---W----- 236
Query: 185 QQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVLAIAL 244
LL VAF+ R I WI+ + F + ++ +
Sbjct: 237 ---------------VLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGV 281
Query: 245 GFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFS----VLFFISVGMM 300
+ + G GAF G+++ L + ++ L D S LFF G+
Sbjct: 282 MISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEK---LEDFVSGLLLPLFFAISGLK 338
Query: 301 FNPDILISNPI---LLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSF 357
N I P LL++ +I+ GK + I+ + +T+ ++ G
Sbjct: 339 TNVT-KIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEM 397
Query: 358 ILANLGVELGILPDQA-RDLILASSIISIILNPLV 391
I+ N+G + +L D++ ++L + ++ ++ P+V
Sbjct: 398 IVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVV 432
>gnl|CDD|181909 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 35.1 bits (82), Expect = 0.050
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRS-LGIDVIYGNATITKILLMA 508
+I+VG G++G + +NL + VI+ E+++ L+ L + + GN + +L A
Sbjct: 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREA 61
Query: 509 NIEKA 513
E A
Sbjct: 62 GAEDA 66
Score = 33.9 bits (79), Expect = 0.12
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSL--GIDVIYGNATITKILLMA 508
V++VG G IG + + L+ G ++ +IE ++ EEL V++G+ T ++L
Sbjct: 234 VMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEE 293
Query: 509 NIEKA 513
I++A
Sbjct: 294 GIDEA 298
>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA
dehydrogenase. Members of this protein family are
6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an
enzyme in the anaerobic metabolism of aromatic enzymes
by way of benzoyl-CoA, as seen in Thauera aromatica,
Geobacter metallireducens, and Azoarcus sp. The
experimentally characterized form from T. aromatica uses
only NAD+, not NADP+. Note that Rhodopseudomonas
palustris uses a different pathway to perform a similar
degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Length = 349
Score = 33.7 bits (77), Expect = 0.15
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 407 ARVTSSTEQYSHICVEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQN 466
AR+ ++ H+ V D P ++ ++ ++K DL VI++G G +G +VQ
Sbjct: 133 ARLAAAGLPLEHVSVVADAVT-TPYQAAVQ---AGLKKGDL---VIVIGAGGVGGYMVQT 185
Query: 467 LKAAGIALLVIEDSEKKIEELRSLGIDVI 495
KA G A++ I+ +K+E ++ G D+
Sbjct: 186 AKAMGAAVVAIDIDPEKLEMMKGFGADLT 214
>gnl|CDD|163514 TIGR03802, Asp_Ala_antiprt, aspartate-alanine antiporter. All
members of the seed alignment for this model are
asparate-alanine anti-transporters (AspT) encoded next
to the gene for aspartate 4-decarboxylase (AspD), which
converts asparate to alanine, releasing CO2. The
exchange of Asp for Ala is electrogenic, so the
AspD/AspT system confers a proton-motive force. This
transporter contains two copies of the AspT/YidE/YbjL
antiporter duplication domain (TIGR01625).
Length = 562
Score = 33.0 bits (76), Expect = 0.24
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 240 LAIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGM 299
L++ALG+ G K FG S LG AG ++ + Q Q ++ F LF ++G
Sbjct: 17 LSLALGYLIGKIK-FG-SFQLGGV-AGSLIVAVLIGQLGIQIDPGVKAVFFALFIFAIGY 73
Query: 300 MFNPDILIS---NPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAA-SLSQ 351
P S + + ++ ++ + + + + FG TA +AA L+Q
Sbjct: 74 EVGPQFFASLKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLAAGGLTQ 129
>gnl|CDD|182530 PRK10537, PRK10537, voltage-gated potassium channel; Provisional.
Length = 393
Score = 31.9 bits (73), Expect = 0.44
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 449 DHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATITKILLMA 508
DH I+ G+ + L+ G A+ VI +E D+I G+++ + +L A
Sbjct: 241 DHFIICGHSPLAINTYLGLRQRGQAVTVI--VPLGLEHRLPDDADLIPGDSSDSAVLKKA 298
Query: 509 NIEKARSLVVSISTAFEAAYITQEARNSNPSILIIALADSDSEVEHLTRYGADTV 563
+AR+++ + A++ A+ + + +A + +E + R D +
Sbjct: 299 GAARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMI 353
>gnl|CDD|162126 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family.
Length = 321
Score = 30.8 bits (70), Expect = 1.1
Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 284 PLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFG--RSVAT 341
L A + + S+G+ +P + ++A+I+ + + + + G +
Sbjct: 211 ILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELS 270
Query: 342 ALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFVL 394
+ A+L + A L E + + A + S+++S+I PL +L
Sbjct: 271 VAILQAALPG----GAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIIL 319
>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional.
Length = 386
Score = 29.8 bits (67), Expect = 1.8
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 36/128 (28%)
Query: 454 VGYGRIGKVIVQNLKAAGIALLVIE------DSEKKI-----EELRSL--GIDVIYGNAT 500
VG GRIG++++Q LK LL + + EK+ E+L ++ DV+ N
Sbjct: 205 VGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTP 264
Query: 501 ITKILLMANIEKARSLVVS--ISTAFEAAYITQEARNSNPSILIIALADSDSEVE----- 553
+T EK R + I+ + I AR A+ D+ + +
Sbjct: 265 LT--------EKTRGMFNKERIAKMKKGVLIVNNARG--------AIMDTQAVADACSSG 308
Query: 554 HLTRYGAD 561
H+ YG D
Sbjct: 309 HIGGYGGD 316
>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 450
Score = 29.9 bits (68), Expect = 2.1
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKK------IEELRSLGIDVIYG 497
V++VG G G + + LK G A +++ D +++ +EEL LGI+++ G
Sbjct: 8 VLVVGAGVSGLALAKFLKKLG-AKVILTDEKEEDQLKEALEELGELGIELVLG 59
>gnl|CDD|179519 PRK02983, lysS, lysyl-tRNA synthetase; Provisional.
Length = 1094
Score = 29.5 bits (67), Expect = 2.3
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 26/121 (21%)
Query: 2 TTIIWGFVLAFIFGAIANRCRLP--TLIGYLVAGILVGPRTPGFVASQSLVPALAEIGII 59
T++ W FVLA + A+ R R L+ YLV L+ + +
Sbjct: 55 TSLAWAFVLALLAAALRRRKRAAWWVLLAYLVLAALLN-----------VALLALGVNTA 103
Query: 60 LLMFGVGLHFSVKDLISVRGIAL-------------PGALIQIILGTALGALMGMVMGWS 106
FG + + V I L GAL + + G +G+++GW
Sbjct: 104 AETFGENSLSIIGFAVHVVAIVLLVLARREFPARVRRGALRKALAVLVGGLAVGILVGWG 163
Query: 107 L 107
L
Sbjct: 164 L 164
>gnl|CDD|163128 TIGR03082, Gneg_AbrB_dup, membrane protein AbrB duplication. The
model describes a hydrophobic sequence region that is
duplicated to form the AbrB protein of Escherichia coli
(not to be confused with a Bacillus subtilis protein
with the same gene symbol). In some species, notably the
Cyanobacteria and Thermus thermophilus, proteins consist
of a single copy rather than two copies. The member from
Pseudomonas putida, PP_1415, was suggested to be an
ammonia monooxygenase characteristic of heterotrophic
nitrifiers, based on an experimental indication of such
activity in the organism and a glimmer of local sequence
similarity between parts of P. putida protein and an
instance of the AmoA protein from Nitrosomonas europaea
(PubMed:9732537); we do not believe the sequence
similarity to be meaningful. The member from E. coli
(b0715, ybgN) appears to be the largely uncharacterized
AbrB (aidB regulator) protein of E. coli cited in
Volkert, et al. (PubMed 8002588), although we did not
manage to trace the origin of association of the article
to the sequence.
Length = 156
Score = 29.4 bits (67), Expect = 2.9
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 8 FVLAFIFGAIANRCRLPT--LIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGV 65
++ G +A+ LP L+G L+AG ++ +L P L + +++ +
Sbjct: 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL---AGGLEITLPPWLLALAQVVIGILI 60
Query: 66 GLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWSLG 108
G F+ + L ++ + AL+ +L AL AL+ ++ G
Sbjct: 61 GSRFTREVLAELKRLWPA-ALLSTVLLLALSALLAWLLARLTG 102
>gnl|CDD|182850 PRK10935, PRK10935, nitrate/nitrite sensor protein NarQ;
Provisional.
Length = 565
Score = 29.4 bits (67), Expect = 3.0
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 313 LMMAVIIVIIGKALIAFIV--VIAFGR-SVAT---ALTIAASLSQIGEFSFIL--ANLGV 364
L++ I ++G LI +V + F R V L A+ + G+F I L
Sbjct: 147 LILLAAISLLGLILILTLVFFTVRFTRRQVVAPLNQLVTASQQIEKGQFDHIPLDTTLPN 206
Query: 365 ELGIL 369
ELG+L
Sbjct: 207 ELGLL 211
>gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional.
Length = 335
Score = 29.3 bits (65), Expect = 3.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 451 VILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVI 495
V ++GYG G QNL+ +G+ ++V K E ++ G +V+
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM 63
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model
represents the full length, over a thousand amino acids,
of a multicopy family of eukaryotic proteins, many of
which are designated ubiquitin-activating enzyme E1.
Members have two copies of the ThiF family domain
(pfam00899), a repeat found in ubiquitin-activating
proteins (pfam02134), and other regions.
Length = 1008
Score = 29.1 bits (65), Expect = 3.4
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 450 HVILVGYGRIGKVIVQNLKAAGIALLVIEDSEK-KIEELRS 489
+V++ G G +G I +NL AG+ + + D+EK + +L S
Sbjct: 26 NVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSS 66
>gnl|CDD|132368 TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3-diol
dehydrogenase. Members of this family occur as the BphD
protein of biphenyl catabolism and as the TodD protein
of toluene catabolism. Members catalyze the second step
in each pathway and proved interchangeable when tested;
the first and fourth enzymes in each pathway confer
metabolic specificity. In the context of biphenyl
degradation, the enzyme acts as
cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC
1.3.1.56), while in toluene degradation it acts as
cis-toluene dihydrodiol dehydrogenase.
Length = 262
Score = 28.6 bits (64), Expect = 4.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 447 LCDHVILV--GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYG 497
L V+LV G +G+ IV A G + V++ S ++EL + D + G
Sbjct: 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVG 55
>gnl|CDD|181371 PRK08306, PRK08306, dipicolinate synthase subunit A; Reviewed.
Length = 296
Score = 28.7 bits (65), Expect = 4.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 442 IQKTDLCDH---VILVGYGRIGKVIVQNLKAAG 471
I+ T + H V+++G+GR G + + LKA G
Sbjct: 143 IEHTPITIHGSNVLVLGFGRTGMTLARTLKALG 175
>gnl|CDD|177659 PLN00021, PLN00021, chlorophyllase.
Length = 313
Score = 28.9 bits (65), Expect = 4.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 102 VMGWSLGGSVVFGLALSIASTVVLLK 127
+ G S GG F LAL A+ + LK
Sbjct: 130 LAGHSRGGKTAFALALGKAAVSLPLK 155
>gnl|CDD|130686 TIGR01625, YidE_YbjL_dupl, AspT/YidE/YbjL antiporter duplication
domain. This model represents a domain that is
duplicated the aspartate-alanine antiporter AspT, as
well as HI0035 of Haemophilus influenzae, YidE and YbjL
of E. coli, and a number of other known or putative
transporters. Member proteins may have 0, 1, or 2 copies
of TrkA potassium uptake domain pfam02080 between the
duplications. The domain contains several apparent
transmembrane regions and is proposed here to act in
transport.
Length = 154
Score = 28.5 bits (64), Expect = 4.7
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 22 RLPTLIGYLVAGILVG---PRTPGFV-ASQSLVPALAEIGIILLMFGVGLH-----FSVK 72
+L G L G+L+G P S + E G++L ++GVGL FS
Sbjct: 20 KLGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSL 79
Query: 73 DLISVRGIALPGALIQIILGTALGALMGMVMGWSLGG 109
GALI ++ + + ++ +
Sbjct: 80 KDGGGLLRINGGALITVVPTLLVAVALIKLLRINYAL 116
>gnl|CDD|114690 pfam05982, DUF897, Domain of unknown function (DUF897). Family of
bacterial proteins with unknown function.
Length = 327
Score = 28.5 bits (64), Expect = 4.9
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 26 LIGYLVAGILVGPRTPGFVASQSLVPALAEIGIILLMFGVGLHFS--VKDLISVRGIALP 83
L+G LV G++ G G L + + L + +GL +K+L V +
Sbjct: 183 LLGGLVIGLITGEE--GVYVLSPFFDPLFQGVLCLFLLEMGLTAGRRLKELRKVGQGLVV 240
Query: 84 GALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIAS 121
++ IL +G +G G GG V+ + + AS
Sbjct: 241 FGIVAPILLGFIGIGVGYATGLPPGGVVLLAVLAASAS 278
>gnl|CDD|161976 TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ.
All proteins in this family are 5'-3' single-strand DNA
exonucleases. These proteins are used in some aspects of
mismatch repair, recombination, and recombinational
repair.
Length = 539
Score = 28.4 bits (64), Expect = 5.5
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 455 GYGRIGKVIVQNLKAAGIALLVIED----SEKKIEELRSLGIDVI 495
GYG + ++ G++L++ D + ++I+ + LGIDVI
Sbjct: 96 GYG-LSPEALREAIENGVSLIITVDNGISAHEEIDYAKELGIDVI 139
>gnl|CDD|180146 PRK05582, PRK05582, DNA topoisomerase I; Validated.
Length = 650
Score = 28.2 bits (64), Expect = 5.5
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 453 LVGYGRIGKVI---VQNLKAAG----IALLVIEDSEKKIEE 486
LVGY ++ ++ V+ +AG +AL +I D EK+I
Sbjct: 145 LVGY-KLSPLLWKKVKKGLSAGRVQSVALKLIIDREKEIRA 184
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine/ornithine antiporter. Members
of this protein family are the arginine/ornithine
antiporter, ArcD. This exchanger of ornithine for
arginine occurs in a system with arginine deiminase,
ornithine carbamoyltransferase, and carbamate kinase,
with together turn arginine to ornithine with the
generation of ATP and release of CO2.
Length = 468
Score = 28.5 bits (64), Expect = 5.6
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Query: 95 LGALMGMVMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIAVGWLIVEDLII 154
LGAL +V+G +G + F L +A+ G + +GW+I ++
Sbjct: 5 LGALTALVVGSMIGSGI-FSLPSDMAAG--------------AAAGAVLIGWVITGVGML 49
Query: 155 VLALVL 160
LA
Sbjct: 50 ALAFSF 55
>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase
ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF
family of proteins (pfam00899) include a number of
members encoded in the midst of thiamine biosynthetic
operons. This mix of known and putative ThiF proteins
shows a deep split in phylogenetic trees, with the
Escherichia. coli ThiF and the E. coli MoeB proteins
seemingly more closely related than E. coli ThiF and
Campylobacter (for example) ThiF. This model represents
the more widely distributed clade of ThiF proteins such
found in E. coli.
Length = 202
Score = 28.1 bits (63), Expect = 6.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 443 QKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVIYGNATI 501
Q+ L HV+++G G +G L AG+ +VI D + +L +L +++ +
Sbjct: 16 QQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD--HVDLSNLQRQILFTEEDV 72
>gnl|CDD|183357 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.
Length = 267
Score = 27.8 bits (63), Expect = 7.5
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 19/89 (21%)
Query: 451 VILVGYGRIGKVIVQNLKAAGIA---LLVIEDSEKKIEELRS-LGIDVIYGNATITK--- 503
+ +G G + I+ L A+G+ ++V + S +K L G+ N +
Sbjct: 5 IGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEAD 64
Query: 504 -ILL------MANI-----EKARSLVVSI 520
++L M + + LVVSI
Sbjct: 65 VVVLAVKPQVMEEVLSELKGQLDKLVVSI 93
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 27.9 bits (63), Expect = 7.7
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 29 YLVAGILVGP-RTPGFVASQSLVPALAEIGIILLMF 63
YL GI P ++ F+ QS +P LAE+ + +
Sbjct: 67 YLAVGI--DPAKSTIFI--QSQIPELAELTMYYMNL 98
>gnl|CDD|177441 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 27.6 bits (62), Expect = 8.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 495 IYGNATITKILLMANIEKARSLVVSISTAFEAAYI 529
I+ N T+T L+ EKA L + F +I
Sbjct: 165 IFSNKTLTCFLIYTTKEKAELLYKKLLEKFNPTFI 199
>gnl|CDD|180212 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 359
Score = 27.8 bits (63), Expect = 8.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 91 LGTALGALMGMVMGWSLGGSVVFGLALSIASTVVLLKALQENRILETDRGKIA--VGWLI 148
L TA L G+V+ W G S+ L+ +L +R + D + L+
Sbjct: 33 LNTAASLLAGLVVLWFFGPSLARRLS------GMLRALFSFDREIIFDPNDVLSLFLLLL 86
Query: 149 VEDLIIVLALVLIPAAA 165
+E L+ +L ++L+ A
Sbjct: 87 LEALLALLPILLLLVLA 103
>gnl|CDD|162060 TIGR00836, amt, ammonium transporter. The mechanism of energy
coupling, if any, to methyl-NH2 or NH3 uptake by the
AmtB protein of E. coli is not entirely clear. NH4+
uniport driven by the pmf, energy independent NH3
facilitation, and NH4+/K+ antiport have been proposed as
possible transport mechanisms. In Corynebacterium
glutamicum and Arabidopsis thaliana, uptake via the Amt1
homologues of AmtB has been reported to be driven by the
pmf.
Length = 403
Score = 27.6 bits (62), Expect = 9.7
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 30 LVAGILVGPRTPGFVASQSLVP---ALAEIGIILLMFGVGLHFSVKDLISVRGIALPGAL 86
L A +++GPR F ++ P L +G +L FG F+ ++ G A A
Sbjct: 172 LAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFG-WFGFNAGSALAANGTA-AYAA 229
Query: 87 IQIILGTALGALMGMVMGWSLGGSVVFGLALS 118
+ L A G L +++ W G A +
Sbjct: 230 VNTNLAAAAGGLTWLLIDWLKHGKPTLLGACN 261
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.326 0.140 0.392
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 9,900,647
Number of extensions: 700167
Number of successful extensions: 3186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3106
Number of HSP's successfully gapped: 250
Length of query: 609
Length of database: 5,994,473
Length adjustment: 99
Effective length of query: 510
Effective length of database: 3,855,281
Effective search space: 1966193310
Effective search space used: 1966193310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.1 bits)