BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780924|ref|YP_003065337.1| potassium-efflux system
protein [Candidatus Liberibacter asiaticus str. psy62]
(609 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 609
Score = 1208 bits (3125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/609 (100%), Positives = 609/609 (100%)
Query: 1 MTTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIIL 60
MTTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIIL
Sbjct: 1 MTTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIIL 60
Query: 61 LMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIA 120
LMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIA
Sbjct: 61 LMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIA 120
Query: 121 STVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWT 180
STVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWT
Sbjct: 121 STVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWT 180
Query: 181 SFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVL 240
SFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVL
Sbjct: 181 SFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVL 240
Query: 241 AIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMM 300
AIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMM
Sbjct: 241 AIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMM 300
Query: 301 FNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILA 360
FNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILA
Sbjct: 301 FNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILA 360
Query: 361 NLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQSFLVLRFARVTSSTEQYSHIC 420
NLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQSFLVLRFARVTSSTEQYSHIC
Sbjct: 361 NLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQSFLVLRFARVTSSTEQYSHIC 420
Query: 421 VEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS 480
VEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS
Sbjct: 421 VEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS 480
Query: 481 EKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSI 540
EKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSI
Sbjct: 481 EKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSI 540
Query: 541 LIIALADSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHHEKVTCDRSNKDEIDSKD 600
LIIALADSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHHEKVTCDRSNKDEIDSKD
Sbjct: 541 LIIALADSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHHEKVTCDRSNKDEIDSKD 600
Query: 601 DSSVLSVNL 609
DSSVLSVNL
Sbjct: 601 DSSVLSVNL 609
>gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 277
Score = 28.1 bits (61), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 251 SKLFGVSLSLGAFFAGMILAESE---LSQSAAQESLPLRDAFSVLF 293
S + G+ L +GAF AGMI S +S QE L L FS +F
Sbjct: 61 SHMAGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMF 106
>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 468
Score = 27.3 bits (59), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 449 DHVILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVI 495
+H I V G GR G LK +G+ ++ +D +++ + +GI+VI
Sbjct: 8 NHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVI 55
>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
Length = 458
Score = 24.3 bits (51), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 394 LAEFLQSFLVLRFARVTSSTEQYSHICVEQDTKQEVPVESILEQQEVTIQKTDLCDHVIL 453
L QSF+ AR ++T+ SHI + T +E Q+E+ Q +D C + +
Sbjct: 182 LGRVFQSFV----ARWFNTTQIGSHIGAVRYTAKETA------QKEIEAQLSDCCLSLDI 231
Query: 454 VGYGRIGKVIV 464
Y I K I+
Sbjct: 232 ADYQNIDKPIL 242
>gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62]
Length = 431
Score = 24.3 bits (51), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 129 LQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMG 188
L RI++ R VG +IVE+ II+ A A A N S++ H T
Sbjct: 6 LNNTRIIDPSRDIDEVGAIIVENGIILAA----GADALNAKFPTSALIHDCTGL------ 55
Query: 189 FEVGMPGLI 197
V +PG+I
Sbjct: 56 --VAVPGII 62
>gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase subunit III [Candidatus Liberibacter
asiaticus str. psy62]
Length = 210
Score = 23.9 bits (50), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 264 FAGMILAESELSQSA---AQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIV 320
F GMI E+ + A + E++P R AF FF VG+ + + ++ + ++I
Sbjct: 113 FFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGL---HGLHVFFGLIWLFVLVIQ 169
Query: 321 IIGKALIA 328
I+ K LI+
Sbjct: 170 ILKKGLIS 177
>gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal
peptide protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 288
Score = 23.9 bits (50), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 337 RSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFV 393
+ V ++ + A+ +IG+F F+ N+ V+ I D+ + L S I I + F+
Sbjct: 181 KGVISSHALGATFGEIGQFQFLPVNV-VKYAIDADEDGKIDLVKSNIDAIASAAKFL 236
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.140 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,120
Number of Sequences: 1233
Number of extensions: 13390
Number of successful extensions: 72
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 14
length of query: 609
length of database: 328,796
effective HSP length: 79
effective length of query: 530
effective length of database: 231,389
effective search space: 122636170
effective search space used: 122636170
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 41 (20.4 bits)