BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus str. psy62] (609 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 609 Score = 1208 bits (3125), Expect = 0.0, Method: Compositional matrix adjust. Identities = 609/609 (100%), Positives = 609/609 (100%) Query: 1 MTTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIIL 60 MTTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIIL Sbjct: 1 MTTIIWGFVLAFIFGAIANRCRLPTLIGYLVAGILVGPRTPGFVASQSLVPALAEIGIIL 60 Query: 61 LMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIA 120 LMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIA Sbjct: 61 LMFGVGLHFSVKDLISVRGIALPGALIQIILGTALGALMGMVMGWSLGGSVVFGLALSIA 120 Query: 121 STVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWT 180 STVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWT Sbjct: 121 STVVLLKALQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWT 180 Query: 181 SFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVL 240 SFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVL Sbjct: 181 SFITQQMGFEVGMPGLIMITLLKVVAFIGVMLIFGRRVIPWILHMIFYTGSRELFRLGVL 240 Query: 241 AIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMM 300 AIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMM Sbjct: 241 AIALGFAYGSSKLFGVSLSLGAFFAGMILAESELSQSAAQESLPLRDAFSVLFFISVGMM 300 Query: 301 FNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILA 360 FNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILA Sbjct: 301 FNPDILISNPILLMMAVIIVIIGKALIAFIVVIAFGRSVATALTIAASLSQIGEFSFILA 360 Query: 361 NLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQSFLVLRFARVTSSTEQYSHIC 420 NLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQSFLVLRFARVTSSTEQYSHIC Sbjct: 361 NLGVELGILPDQARDLILASSIISIILNPLVFVLAEFLQSFLVLRFARVTSSTEQYSHIC 420 Query: 421 VEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS 480 VEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS Sbjct: 421 VEQDTKQEVPVESILEQQEVTIQKTDLCDHVILVGYGRIGKVIVQNLKAAGIALLVIEDS 480 Query: 481 EKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSI 540 EKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSI Sbjct: 481 EKKIEELRSLGIDVIYGNATITKILLMANIEKARSLVVSISTAFEAAYITQEARNSNPSI 540 Query: 541 LIIALADSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHHEKVTCDRSNKDEIDSKD 600 LIIALADSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHHEKVTCDRSNKDEIDSKD Sbjct: 541 LIIALADSDSEVEHLTRYGADTVVMSAREIALGMLDRLNQVHHEKVTCDRSNKDEIDSKD 600 Query: 601 DSSVLSVNL 609 DSSVLSVNL Sbjct: 601 DSSVLSVNL 609 >gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport) [Candidatus Liberibacter asiaticus str. psy62] Length = 277 Score = 28.1 bits (61), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 251 SKLFGVSLSLGAFFAGMILAESE---LSQSAAQESLPLRDAFSVLF 293 S + G+ L +GAF AGMI S +S QE L L FS +F Sbjct: 61 SHMAGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMF 106 >gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 Score = 27.3 bits (59), Expect = 0.77, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 449 DHVILV-GYGRIGKVIVQNLKAAGIALLVIEDSEKKIEELRSLGIDVI 495 +H I V G GR G LK +G+ ++ +D +++ + +GI+VI Sbjct: 8 NHSIAVFGLGRSGLSAACALKDSGVHVIAWDDHPCAVKQAKDMGIEVI 55 >gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 24.3 bits (51), Expect = 6.3, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 10/71 (14%) Query: 394 LAEFLQSFLVLRFARVTSSTEQYSHICVEQDTKQEVPVESILEQQEVTIQKTDLCDHVIL 453 L QSF+ AR ++T+ SHI + T +E Q+E+ Q +D C + + Sbjct: 182 LGRVFQSFV----ARWFNTTQIGSHIGAVRYTAKETA------QKEIEAQLSDCCLSLDI 231 Query: 454 VGYGRIGKVIV 464 Y I K I+ Sbjct: 232 ADYQNIDKPIL 242 >gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 24.3 bits (51), Expect = 6.6, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 12/69 (17%) Query: 129 LQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMG 188 L RI++ R VG +IVE+ II+ A A A N S++ H T Sbjct: 6 LNNTRIIDPSRDIDEVGAIIVENGIILAA----GADALNAKFPTSALIHDCTGL------ 55 Query: 189 FEVGMPGLI 197 V +PG+I Sbjct: 56 --VAVPGII 62 >gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase subunit III [Candidatus Liberibacter asiaticus str. psy62] Length = 210 Score = 23.9 bits (50), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 264 FAGMILAESELSQSA---AQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIV 320 F GMI E+ + A + E++P R AF FF VG+ + + ++ + ++I Sbjct: 113 FFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGL---HGLHVFFGLIWLFVLVIQ 169 Query: 321 IIGKALIA 328 I+ K LI+ Sbjct: 170 ILKKGLIS 177 >gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 288 Score = 23.9 bits (50), Expect = 7.5, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 337 RSVATALTIAASLSQIGEFSFILANLGVELGILPDQARDLILASSIISIILNPLVFV 393 + V ++ + A+ +IG+F F+ N+ V+ I D+ + L S I I + F+ Sbjct: 181 KGVISSHALGATFGEIGQFQFLPVNV-VKYAIDADEDGKIDLVKSNIDAIASAAKFL 236 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.140 0.392 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 339,120 Number of Sequences: 1233 Number of extensions: 13390 Number of successful extensions: 72 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 14 length of query: 609 length of database: 328,796 effective HSP length: 79 effective length of query: 530 effective length of database: 231,389 effective search space: 122636170 effective search space used: 122636170 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 41 (20.4 bits)