HHsearch alignment for GI: 254780925 and conserved domain: COG0341
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion].
Probab=99.96 E-value=4.5e-26 Score=171.61 Aligned_cols=175 Identities=25% Similarity=0.525 Sum_probs=158.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2011001102457888888999999999999730-320356666777777889999999987665578999999865335
Q gi|254780925|r 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 (833)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~-~r~~li~~iaIpisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~v 428 (833)
T Consensus 122 ~~Vgp~vg~eL~~~~~~Al~~ali~I~iYV~~RFe~~~a~aaI~al~hDvii~~g~~slfgiE~~l~~IAAlLtiIGYSv 201 (305)
T COG0341 122 EFVGPTVGKELARQGLLALLLALVGILIYVFFRFEWRFALAAILALLHDVIITLGFFSLFGIEFNLATIAALLTIIGYSV 201 (305)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHEEECC
T ss_conf 37895258999998999999999999875430102377999999999999999999988503434999999999801203
Q ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 789999999876310--255579999999999999999765568999888761455443114788778889987777511
Q gi|254780925|r 429 DSNILVNERIREENR--KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 (833)
Q Consensus 429 d~~i~~~e~~~~~~~--~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 506 (833)
T Consensus 202 NDtIVvfDRIREn~r~~~~~~~~~iin~si~qTlsRti~Ts~ttll~v~~l~~fgg~~l~~fa~~llvGii~gtySSifi 281 (305)
T COG0341 202 NDTIVVFDRIRENLRKYRRETLREIINTSINQTLTRTINTSVTTLLVVVALLLFGGGSLKDFALALLVGIIAGTYSSIFI 281 (305)
T ss_pred CCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77699876888887660268789999999999999999999999999999998072589998999999999977739999
Q ss_pred HHHHHHHHHHCCCCCCCC
Q ss_conf 399999986136677556
Q gi|254780925|r 507 VRAMMIFIIRYKKMKSID 524 (833)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~ 524 (833)
T Consensus 282 A~pll~~~~~~~~~~~~~ 299 (305)
T COG0341 282 AAPLLLLLGKRREKKKAP 299 (305)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999988757513465