HHsearch alignment for GI: 254780925 and conserved domain: COG0341

>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion].
Probab=99.96  E-value=4.5e-26  Score=171.61  Aligned_cols=175  Identities=25%  Similarity=0.525  Sum_probs=158.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2011001102457888888999999999999730-320356666777777889999999987665578999999865335
Q gi|254780925|r  350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV  428 (833)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~-~r~~li~~iaIpisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~v  428 (833)
T Consensus       122 ~~Vgp~vg~eL~~~~~~Al~~ali~I~iYV~~RFe~~~a~aaI~al~hDvii~~g~~slfgiE~~l~~IAAlLtiIGYSv  201 (305)
T COG0341         122 EFVGPTVGKELARQGLLALLLALVGILIYVFFRFEWRFALAAILALLHDVIITLGFFSLFGIEFNLATIAALLTIIGYSV  201 (305)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHEEECC
T ss_conf             37895258999998999999999999875430102377999999999999999999988503434999999999801203


Q ss_pred             HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             789999999876310--255579999999999999999765568999888761455443114788778889987777511
Q gi|254780925|r  429 DSNILVNERIREENR--KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI  506 (833)
Q Consensus       429 d~~i~~~e~~~~~~~--~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  506 (833)
T Consensus       202 NDtIVvfDRIREn~r~~~~~~~~~iin~si~qTlsRti~Ts~ttll~v~~l~~fgg~~l~~fa~~llvGii~gtySSifi  281 (305)
T COG0341         202 NDTIVVFDRIRENLRKYRRETLREIINTSINQTLTRTINTSVTTLLVVVALLLFGGGSLKDFALALLVGIIAGTYSSIFI  281 (305)
T ss_pred             CCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77699876888887660268789999999999999999999999999999998072589998999999999977739999


Q ss_pred             HHHHHHHHHHCCCCCCCC
Q ss_conf             399999986136677556
Q gi|254780925|r  507 VRAMMIFIIRYKKMKSID  524 (833)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~  524 (833)
T Consensus       282 A~pll~~~~~~~~~~~~~  299 (305)
T COG0341         282 AAPLLLLLGKRREKKKAP  299 (305)
T ss_pred             HHHHHHHHHHHHHHCCCC
T ss_conf             999999988757513465