HHsearch alignment for GI: 254780925 and conserved domain: COG0342
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=439.13 Aligned_cols=495 Identities=44% Similarity=0.705 Sum_probs=428.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf 97517999999999999999996310243404457420476742211012785499998433675189887899999998
Q gi|254780925|r 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF 80 (833)
Q Consensus 1 mr~~~~~~il~~~i~l~g~~~~lp~~~~~~~~~~~P~~~p~~~i~lGLDL~GG~~v~~~~~~~~~~~~~v~~~~e~l~~~ 80 (833)
T Consensus 2 ~~~~~~~~~l~~~~v~~~~~~~~-~~------~~l~-~~~~~~~~lGLDL~GG~~~~l~v~~~~~~~~~~~~~~~~l~~~ 73 (506)
T COG0342 2 MRFSRWKKQLLALVVLIGILFAL-NL------SWLA-KLKVNPMKLGLDLRGGVHILLEVDMPTALKKRLEQLADDLRSR 73 (506)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HH------HHHH-HCCCCCCCCCEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 86303899999999999999999-88------8764-0466754102563785499999644146777788888999998
Q ss_pred HHHCCCEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEECCCCCCCHHHH
Q ss_conf 62059126589831997999966976789999999999998744176544577314236775116875134566512689
Q gi|254780925|r 81 LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 (833)
Q Consensus 81 v~~~~~~~sts~~~~~~I~V~f~~~~d~~~a~~~v~~~v~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (833)
T Consensus 74 l~~~~v~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 134 (506)
T COG0342 74 LRKEGVSYSGVRVEGNGITVPLRDAAELDKARKLLRLLHRGVV-------------------LFLALTEAELDEIRKDAV 134 (506)
T ss_pred HHHCCCCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCCE-------------------EEECCCHHHHHHHHHHHH
T ss_conf 8752766530342286579953884766566666665147630-------------------110011667876410145
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC-------CCCCC
Q ss_conf 87788876311231034654210125730123334689889854126989998887400123444555-------65334
Q gi|254780925|r 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF-------GVRFL 233 (833)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 233 (833)
T Consensus 135 ~q~~~~~~~Rv~~~gv~eP~i~~~g~~rI~velpG~~d~~~a~~ll~~ta~l~f~~v~~~~~~~~~~~~~~~~~~~~~~~ 214 (506)
T COG0342 135 QQNITILRNRVNELGVAEPVIQRQGADRIVVELPGVQDTARAKDLLGKTATLEFRLVDDSVKLADAADGLAPAGSEVLKL 214 (506)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 40247766431344667770563068605886799877788998736777038885376655013331268876410245
Q ss_pred CCCCCCEEECCCCCEEECCEECCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 66665100026750120211101111223333221000012332210110010000012322110000001332000123
Q gi|254780925|r 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313 (833)
Q Consensus 234 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (833)
T Consensus 215 ~~~~~~~~~l~~~~~l~G~~i~~a~~~~~~~~~~~~v~f~ld~~g~~~~~~~t~~n~gk~~aivld~~~~s~p~I~~~i~ 294 (506)
T COG0342 215 DREGNRPVLLKKRVILTGDHITDATVGFDQRGNQPVVNFSLDSEGARIFADFTKANVGKRMAIVLDGQVISAPVINEAIT 294 (506)
T ss_pred CCCCCCCEEEEEHHCCCCCHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCCCC
T ss_conf 66677623543100246530111545756678860589886646778899976742386557996053403771032026
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 33443210135788765444321100001223333320110011024578888889999999999997303203566667
Q gi|254780925|r 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393 (833)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~~r~~li~~ia 393 (833)
T Consensus 295 g~~~~itG~ft~~eA~~LA~lLrsGaLp~~l~i~e~rtVgpsLG~~~i~~gi~Agl~g~~~V~vfm~~~Yr~~Gvia~ia 374 (506)
T COG0342 295 GGSGQITGNFTAEEARDLALLLRSGALPAPLEIVEERTVGPTLGADSIKAGLIAGLIGLALVAVFMLLYYRLAGVIAAIA 374 (506)
T ss_pred CCCCEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77503558567889999999996589888604655366774547678997899999999999999999998758999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77777889999999987665578999999865335789999999876310255579999999999999999765568999
Q gi|254780925|r 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 (833)
Q Consensus 394 Ipisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~ 473 (833)
T Consensus 375 l~~n~~lil~vls~lgatLtLpgIAGiILtIGmaVDaNVlI~ERIrEElr~G~s~~~ai~~G~~rAf~tI~DsN~TTlia 454 (506)
T COG0342 375 LGLNGVLILAVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERIREELRNGKSVLSAIDAGFKRAFSTILDSNATTLIA 454 (506)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 99999999999997262101302617988662220354775088889886695289999889999999999714189999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8887614554431147887788899877775113999999861366775
Q gi|254780925|r 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 (833)
Q Consensus 474 ~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (833)
T Consensus 455 ~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~~~~~~~~~~k~ 503 (506)
T COG0342 455 AAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLLNLLVGRRRLKK 503 (506)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999984567720999999999998865668999999999960355465