HHsearch alignment for GI: 254780925 and conserved domain: COG0841
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms].
Probab=100.00 E-value=0 Score=638.49 Aligned_cols=782 Identities=15% Similarity=0.110 Sum_probs=577.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf 97517999999999999999996310243404457420476742211012785499998433675189887899999998
Q gi|254780925|r 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF 80 (833)
Q Consensus 1 mr~~~~~~il~~~i~l~g~~~~lp~~~~~~~~~~~P~~~p~~~i~lGLDL~GG~~v~~~~~~~~~~~~~v~~~~e~l~~~ 80 (833)
T Consensus 7 I~rpv~~~vl~i~i~l~G~~a-----~~~Lpv~~~P~i~~P~i~---------V~t~ypGAsae~ve~~Vt~piE~~l~~ 72 (1009)
T COG0841 7 IRRPVFAWVLAILILLAGLLA-----IRTLPVAQYPDVAPPTIV---------VSATYPGASAETVEDSVTQPIEQQLNG 72 (1009)
T ss_pred HCCCHHHHHHHHHHHHHHHHH-----HHHCCHHHCCCCCCCEEE---------EEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 439099999999999999999-----971986327999997799---------998459999999999986999999736
Q ss_pred HHHCCCEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEECCCCCCCHHHH
Q ss_conf 62059126589831997999966976789999999999998744176544577314236775116875134566512689
Q gi|254780925|r 81 LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 (833)
Q Consensus 81 v~~~~~~~sts~~~~~~I~V~f~~~~d~~~a~~~v~~~v~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (833)
T Consensus 73 i~gi~~i~S~S~~G~s~itv~F~~~~d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~~~~~~~~~i~~~al~s~~~~--~~ 150 (1009)
T COG0841 73 LDGLDYMSSTSSSGSSSITVTFELGTDPDTAAVQVQNKIQQAESRLPSGVQQPGVTVEKSSSNPLLILALTSTTDS--SS 150 (1009)
T ss_pred CCCCCEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEECCCCC--HH
T ss_conf 7883179999749928999999689993899999999999998409997678823733688740899999769998--69
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 87788876311231034654210125730123334689889854126989998887400123444555653346666510
Q gi|254780925|r 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 (833)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (833)
T Consensus 151 ~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rV~ldp~kLa~~gLt~~dV~~ai~~qN~~~~aG~i~~~~~~~~v~~~ 230 (1009)
T COG0841 151 DLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRAQNVQVPAGSIGAGPSTATVRAQ 230 (1009)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECHHHHHHCCCCHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEC
T ss_conf 99999999999987359991499972888636999967999987698999999999970765677211479825999956
Q ss_pred EECCCCCEEECCEECCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 00267501202111011112233332210000123322101100100000123221100000013320001233344321
Q gi|254780925|r 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320 (833)
Q Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (833)
T Consensus 231 ----------g~l~s~e~~~~l~---------i~~~--g~~vrL~DVA~V~~~~~~~~~~~r~NG~pav~l~I~~~~gaN 289 (1009)
T COG0841 231 ----------GRLQTVEEFGNII---------VKSN--GAVVRLKDVARVELGAEDYTSIARLNGKPAVGLAVKKAPGAN 289 (1009)
T ss_pred ----------CCCCCHHHHHCCE---------EECC--CCEEEEEEEEEEEECCCCCHHHEEECCCEEEEEEEEECCCCC
T ss_conf ----------8308989983248---------7048--956986300899715778414315789416999999779987
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 01357887654443211000012233333201100110245788888899999999999973032035666677777788
Q gi|254780925|r 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 (833)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~~r~~li~~iaIpisii~ 400 (833)
T Consensus 290 ~l~v~~~V~~~l~~l~~~lP~gv~~~~~~D~t~~V~~si~~v~~tL~~a~~lVv~Vi~lFL~~~ratlI~~iaiPlsLlg 369 (1009)
T COG0841 290 ALDTAKAVKAKLAELQANLPQGVDIAIPYDTTEFIKASIEEVIKTLFEAIVLVVLVMYLFLGNLRATLIPALAVPVSLLG 369 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEEEHHHHHH
T ss_conf 89999999999999997589994899934775779999999999999999999999998603450007764640789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999876655789999998653357899999998763102555799999999999999997655689998887614
Q gi|254780925|r 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 (833)
Q Consensus 401 tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~~ 480 (833)
T Consensus 370 tf~~m~~~GfslN~lTL~aLiLAiGllVDDAIVVvENI~R~~~-G~~p~~Aa~~a~~ei~~~via~TlvliaVF~Pi~f~ 448 (1009)
T COG0841 370 TFAVMYAFGFSLNTLTLFALVLAIGLLVDDAIVVVENIERHMR-GLPPREAAEKAMGEIGGAVIAITLVLIAVFLPMAFM 448 (1009)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHEEECCEEEEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999488556767999999766236264999941887438-999899999999999899999999999999887756
Q ss_pred CC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCEEECCCCCEEEEECC
Q ss_conf 55---4431147887788899877775113999999861366775564333221010----1220010022210221100
Q gi|254780925|r 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI----PDCIAIQFMRARFWGVGIS 553 (833)
Q Consensus 481 ~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~f~~~~~~~~~~s 553 (833)
T Consensus 449 ~G~~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~~L~~~~~~~~~~ 528 (1009)
T COG0841 449 GGSTGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPKGFFGWFNRFFDRLEDRYQRGLRWVLRRRALVLLLY 528 (1009)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99689999989999999999999999998899999857776666302332345666887789999999983189999999
Q ss_pred HHHCCCCCCCCCCCCCC-CCCCCC--------------------------------------------------------
Q ss_conf 11002122211222234-555556--------------------------------------------------------
Q gi|254780925|r 554 ILFSICSICLLFTHGLN-YGIDFK-------------------------------------------------------- 576 (833)
Q Consensus 554 ~~li~~~~~~~~~~~~~-~~~~~~-------------------------------------------------------- 576 (833)
T Consensus 529 l~~~~~~~~l~~~vp~~F~P~~D~g~~~v~~~~P~g~sl~~t~~~~~~ve~~~~~~~~~~v~~v~~~~G~g~~~~~~~~~ 608 (1009)
T COG0841 529 LVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERTAEVVRQVEDWLLILEKPEVESVFTVVGFGSGQNNAGRA 608 (1009)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEE
T ss_conf 99999999999867877378667686999998899988999999999999998741598716999984567777776159
Q ss_pred ------------------------------------------------CCEEEEEECCCCCCHHHHHHHHHHHHH---CC
Q ss_conf ------------------------------------------------603799971775788999885555420---02
Q gi|254780925|r 577 ------------------------------------------------GGIQLGVLANRPVDLSVVRSNLESLQI---GD 605 (833)
Q Consensus 577 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 605 (833)
T Consensus 609 ~~~Lk~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~-d~~~l~~~a~~~~~~~~~~ 687 (1009)
T COG0841 609 FVSLKPWSERKENSAQAIIARLTKELAKIPDATVFAFTPPAVDGLGQGSGFPFQLRDRGG-DLEALRQAANQLLEKANQS 687 (1009)
T ss_pred EEECCCHHHCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHHC
T ss_conf 994487353556557899999998750477531101478764457889985479999489-9999999999999998608
Q ss_pred --CCCCCCCCC--------------------------------------------CCEEEEEEC----------------
Q ss_conf --333235687--------------------------------------------640244311----------------
Q gi|254780925|r 606 --ISFQNFDGE--------------------------------------------KNFLVRLQY---------------- 623 (833)
Q Consensus 606 --~~~~~~~~~--------------------------------------------~~~~~~~~~---------------- 623 (833)
T Consensus 688 p~~~v~~~~~~~~p~l~i~iDr~ka~~lGvs~~~I~~tL~~~~~g~~v~~~~~~~~~~~V~~~~~~~~R~~~~~l~~l~v 767 (1009)
T COG0841 688 PLLNVRSDLLPDTPQLQVDIDRDKAAALGVSLQDIAQTLQSALGGTYVNDFRDDGRVYKVVVQADAEFRSDPEDLGKLYV 767 (1009)
T ss_pred CCCCCCCCCCCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCHHHCCCHHHHHCEEE
T ss_conf 97300378887886499876799998849999999999999967973315732880888999749354589888710388
Q ss_pred --------------------------------------CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CHHHHH
Q ss_conf --------------------------------------55542023567887775410124443333211121-013578
Q gi|254780925|r 624 --------------------------------------QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG-PKISRE 664 (833)
Q Consensus 624 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~ 664 (833)
T Consensus 768 ~~~~G~~vpLs~va~~~~~~~p~~i~r~n~~~svti~~~~~~g~s~g~a~~~v~~~~~~~~l-p~g~~~~~~G~~~~~~~ 846 (1009)
T COG0841 768 RSADGAMVPLSAFATIRWEYGPPRIVRYNGLPSVTISGNLAPGVSSGDAMAAMEKLAAELPL-PSGYTYEWSGESEQEKE 846 (1009)
T ss_pred ECCCCCEEECHHEEEEEEECCCCEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCC-CCCEEEEECCHHHHHHH
T ss_conf 66999877601407878705897289627946899998669998879999999998752479-99659985645999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 9984579999999999999999999-998999999999999999999999757145699999999997533574788721
Q gi|254780925|r 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 (833)
Q Consensus 665 ~~~~~~~a~~~al~~I~i~i~~rf~-~~~~i~aiial~~~v~~~~g~~~~~g~~~~~~~i~~~l~iiG~svd~~I~~~~R 743 (833)
T Consensus 847 s~~~~~~~~~lai~~vylvL~~qfeS~~~P~~Il~tvPla~iGa~~aL~l~g~~~~v~a~IGli~LiGiv~KNaIllVef 926 (1009)
T COG0841 847 AGGQALLLFALALLVVFLVLAAQYESFSIPFIVMLTVPLGLLGALLALLLTGLPLDVYAQIGLITLIGLVAKNAILIVEF 926 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEHH
T ss_conf 66479999999999999999999853677799998886899999999999589977789999999999997283899548
Q ss_pred EHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0355550577999899999999877799999999999999999970---5343566389999999999999999999999
Q gi|254780925|r 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 (833)
Q Consensus 744 irE~~~~~~~~~~~~~~v~~~~~~~~~~~i~ts~tt~~~~~~l~~~---~~~~~~~f~~~~~~gvi~~~~~sifi~~~~~ 820 (833)
T Consensus 927 a~~~~~---~G~~~~eAiieA~~~RlRPIlMTtla~ilG~iPLal~~g~Ga~~r~~lgi~viGGl~~sT~LtL~~vPv~Y 1003 (1009)
T COG0841 927 ANELRA---EGLSLREAILEAARLRLRPILMTSLAAILGVLPLALSTGAGAESRQPLGIAVVGGLLVATVLTLFVVPVFY 1003 (1009)
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 999998---69998999999998724289999999999999885114653455168368651147999999999999998
Q ss_pred HHHHH
Q ss_conf 99863
Q gi|254780925|r 821 LFIYD 825 (833)
Q Consensus 821 ~~~~~ 825 (833)
T Consensus 1004 ~~~~~ 1008 (1009)
T COG0841 1004 VLVER 1008 (1009)
T ss_pred HHHCC
T ss_conf 86104