HHsearch alignment for GI: 254780925 and conserved domain: TIGR00917
>TIGR00917 2A060601 Niemann-Pick C type protein family; InterPro: IPR004765 The Niemann-Pick C type protein is an integral membrane protein, which indicates that it is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterised by the lysosomal accumulation of unestrified cholesterol.; GO: 0030301 cholesterol transport, 0016021 integral to membrane.
Probab=98.67 E-value=3.6e-07 Score=58.87 Aligned_cols=172 Identities=15% Similarity=0.201 Sum_probs=134.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 1244433332111210135789984579999999999999--99999999899999999999999999999975714569
Q gi|254780925|r 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY--IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721 (833)
Q Consensus 644 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~al~~I~i~--i~~rf~~~~~i~aiial~~~v~~~~g~~~~~g~~~~~~ 721 (833)
T Consensus 1291 ~~~~~v~pYSvfYvFfeQYLti~~~al~~l~islgaiF~Vt~~llgl~~~s~~~~v~svgmi~v~l~Gim~~w~iSLNAv 1370 (1471)
T TIGR00917 1291 SLKLEVFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNVLSAVVVVISVGMIVVNLLGIMYLWNISLNAV 1370 (1471)
T ss_pred CCCEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 57236887689997400143489999998899999999999999623267667887789999999888997750334588
Q ss_pred HHHHHHHHHHHHHCCEEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999997533574788721035555057799989999999987779999999--99999999999705343566389
Q gi|254780925|r 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS--MAAFISVLPMAVWGGSVIGSFAI 799 (833)
Q Consensus 722 ~i~~~l~iiG~svd~~I~~~~RirE~~~~~~~~~~~~~~v~~~~~~~~~~~i~ts--~tt~~~~~~l~~~~~~~~~~f~~ 799 (833)
T Consensus 1371 Svvn~vm~~gi~iefc~h~~~~f----~~~Pk~~sr~~ra~~Al~~MGs-SvfSGItLTKl~GvvVLgFs~S~iF~vyYF 1445 (1471)
T TIGR00917 1371 SVVNLVMAVGISIEFCSHIAAAF----STSPKKVSRVERAKEALAEMGS-SVFSGITLTKLVGVVVLGFSKSEIFQVYYF 1445 (1471)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHCCC-EEHHHHHHHHHHHEEEEEEECCEEEEEEHH
T ss_conf 88777875310233455677666----5057556878999998740785-011478998551013454302203687413
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 9999999-999999999999999
Q gi|254780925|r 800 PMAFGIV-VAASSSIFIAAPILL 821 (833)
Q Consensus 800 ~~~~gvi-~~~~~sifi~~~~~~ 821 (833)
T Consensus 1446 rMYLa~VlLG~~HGLvFL-PVll 1467 (1471)
T TIGR00917 1446 RMYLAIVLLGALHGLVFL-PVLL 1467 (1471)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 688999999765247777-6786