HHsearch alignment for GI: 254780925 and conserved domain: TIGR00917

>TIGR00917 2A060601 Niemann-Pick C type protein family; InterPro: IPR004765 The Niemann-Pick C type protein is an integral membrane protein, which indicates that it is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterised by the lysosomal accumulation of unestrified cholesterol.; GO: 0030301 cholesterol transport, 0016021 integral to membrane.
Probab=98.67  E-value=3.6e-07  Score=58.87  Aligned_cols=172  Identities=15%  Similarity=0.201  Sum_probs=134.1

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             1244433332111210135789984579999999999999--99999999899999999999999999999975714569
Q gi|254780925|r  644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY--IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT  721 (833)
Q Consensus       644 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~al~~I~i~--i~~rf~~~~~i~aiial~~~v~~~~g~~~~~g~~~~~~  721 (833)
T Consensus      1291 ~~~~~v~pYSvfYvFfeQYLti~~~al~~l~islgaiF~Vt~~llgl~~~s~~~~v~svgmi~v~l~Gim~~w~iSLNAv 1370 (1471)
T TIGR00917      1291 SLKLEVFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNVLSAVVVVISVGMIVVNLLGIMYLWNISLNAV 1370 (1471)
T ss_pred             CCCEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             57236887689997400143489999998899999999999999623267667887789999999888997750334588


Q ss_pred             HHHHHHHHHHHHHCCEEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             9999999997533574788721035555057799989999999987779999999--99999999999705343566389
Q gi|254780925|r  722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS--MAAFISVLPMAVWGGSVIGSFAI  799 (833)
Q Consensus       722 ~i~~~l~iiG~svd~~I~~~~RirE~~~~~~~~~~~~~~v~~~~~~~~~~~i~ts--~tt~~~~~~l~~~~~~~~~~f~~  799 (833)
T Consensus      1371 Svvn~vm~~gi~iefc~h~~~~f----~~~Pk~~sr~~ra~~Al~~MGs-SvfSGItLTKl~GvvVLgFs~S~iF~vyYF 1445 (1471)
T TIGR00917      1371 SVVNLVMAVGISIEFCSHIAAAF----STSPKKVSRVERAKEALAEMGS-SVFSGITLTKLVGVVVLGFSKSEIFQVYYF 1445 (1471)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHCCC-EEHHHHHHHHHHHEEEEEEECCEEEEEEHH
T ss_conf             88777875310233455677666----5057556878999998740785-011478998551013454302203687413


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf             9999999-999999999999999
Q gi|254780925|r  800 PMAFGIV-VAASSSIFIAAPILL  821 (833)
Q Consensus       800 ~~~~gvi-~~~~~sifi~~~~~~  821 (833)
T Consensus      1446 rMYLa~VlLG~~HGLvFL-PVll 1467 (1471)
T TIGR00917      1446 RMYLAIVLLGALHGLVFL-PVLL 1467 (1471)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHH
T ss_conf             688999999765247777-6786