HHsearch alignment for GI: 254780925 and conserved domain: TIGR00918
>TIGR00918 2A060602 transmembrane receptor Patched; InterPro: IPR004766 Patched (Ptc) is a Drosophila melanogaster (Fruit fly) membrane protein that plays a critical role in patterning embryonic and imaginal tissues. It constitutively inactivates the transcription of genes wingless, decapentaplegic, and patched itself. The secreted protein, hedgehog (Hh) induces transcription of genes by opposing the patched signaling pathway . In humans, mutations affecting patched (Ptc) or smoothened (Smo) homologues that trigger ligand-independent activity of the Hedgehog (Hh) signalling pathway are associated with tumours such as basal cell carcinoma (BCC) and medulloblastoma . Patched is associated with a complex belonging to the hedgehog pathway. Members of the complex include cubitus interruptus, sex-lethal, patched and smoothened. The complex is present at the plasma membrane and the association of patched changes depending on the activation state of the pathway . ; GO: 0008158 hedgehog receptor activity, 0016021 integral to membrane.
Probab=99.71 E-value=4.1e-12 Score=88.35 Aligned_cols=429 Identities=14% Similarity=0.177 Sum_probs=252.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 3566667777778899999999876655789999-99865335789999999876310255-579999999999999999
Q gi|254780925|r 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGI-VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIF 464 (833)
Q Consensus 387 ~li~~iaIpisii~tl~~l~~~G~tLn~~sl~gl-~~~~g~~vd~~i~~~e~~~~~~~~~~-~~~~a~~~~~~~~~~~i~ 464 (833)
T Consensus 445 GlAGVLLv~lsvAaGLGLcaLLGI~FNAAtTQVlPFLALG~GVDdvFlLahAf~E~~~~kR~P~~ertge~LkrtG~Sv~ 524 (1215)
T TIGR00918 445 GLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPLEERTGECLKRTGASVV 524 (1215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHH
T ss_conf 48999999999975567899986776534444567887205434899999998761679977756565577543230366
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----------------CC-
Q ss_conf 765568999888761455443114788778889987777511399999986136677556-----------------43-
Q gi|254780925|r 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID-----------------IN- 526 (833)
Q Consensus 465 ~~~~t~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~- 526 (833)
T Consensus 525 ltsisn~~aFfmAAliPiPALraFsLQAAiVv~~nfaavlLvFPAilSlDLrRR~~~R~DifCCf~sPC~~~Viq~~Pq~ 604 (1215)
T TIGR00918 525 LTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRREDRRLDIFCCFFSPCSARVIQIEPQA 604 (1215)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHCHHHHCCCHH
T ss_conf 78787899999987247136888888768999999999999747887544302314763255217873011032306525
Q ss_pred --CCC-----CCCCCCCCCEEEC---------------------------------------------------------
Q ss_conf --332-----2101012200100---------------------------------------------------------
Q gi|254780925|r 527 --PLS-----RFFLIPDCIAIQF--------------------------------------------------------- 542 (833)
Q Consensus 527 --~~~-----~~~~~~~~~~i~f--------------------------------------------------------- 542 (833)
T Consensus 605 ~~ad~~~D~~~Y~~pP~~~~Hsfa~~tqit~~~tvql~t~~~~~~q~~~t~~~p~~~l~~qpy~p~t~p~p~p~r~~~d~ 684 (1215)
T TIGR00918 605 AYADGSADSIRYSAPPVYSSHSFAQETQITLQSTVQLRTEYDPSTQHYYTTNEPRSHLSVQPYAPVTNPNPNPNRNNNDN 684 (1215)
T ss_pred HHCCCCCCCCEECCCCCCCCHHHHHCCCEEEEEEEEHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 53476446720117878521112111323233432110067875553010477715556888877778887743222100
Q ss_pred -------------------------------------------------------------------CCCCEEEEECCHH
Q ss_conf -------------------------------------------------------------------2221022110011
Q gi|254780925|r 543 -------------------------------------------------------------------MRARFWGVGISIL 555 (833)
Q Consensus 543 -------------------------------------------------------------------~~~~~~~~~~s~~ 555 (833)
T Consensus 685 ~c~~~~~~~~pgv~~D~l~~q~~~~~gStrdLlsQ~~~~rq~~~C~~~P~~rw~LA~FA~~hyaPfLl~s~~K~~v~~lF 764 (1215)
T TIGR00918 685 NCTNSSSSAVPGVASDPLSEQSADIAGSTRDLLSQFEDSRQKVACLSLPCARWTLATFAEKHYAPFLLQSKAKVVVIFLF 764 (1215)
T ss_pred HHHCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEHHHH
T ss_conf 11000000256544475111057888750555320022112210057886321067887751687122677422412367
Q ss_pred HCCCCCCCCC----CCCCCC----------------CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0021222112----222345----------------55556603799971775788999885555420023332356876
Q gi|254780925|r 556 FSICSICLLF----THGLNY----------------GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 (833)
Q Consensus 556 li~~~~~~~~----~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (833)
T Consensus 765 lAlLg~SLYg~Trv~DGL~l~D~VPr~t~Eh~Fl~AQ~ryfsfY~my~VTQ~~~dY~~~q~~L~dlH~~F~~v~~vl~~~ 844 (1215)
T TIGR00918 765 LALLGLSLYGTTRVQDGLDLTDIVPRDTKEHDFLDAQLRYFSFYNMYLVTQGNFDYATQQQLLYDLHQSFSSVKYVLKED 844 (1215)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 89999888776654245102541368885457999987463043101222278772777899999876205662343688
Q ss_pred -----------------------------C------------------EEEEEECCCCCCC-------------------
Q ss_conf -----------------------------4------------------0244311555420-------------------
Q gi|254780925|r 616 -----------------------------N------------------FLVRLQYQPGDSV------------------- 629 (833)
Q Consensus 616 -----------------------------~------------------~~~~~~~~~~~~~------------------- 629 (833)
T Consensus 845 ~~qlP~~WLhyfr~WL~glQ~aFD~dw~~GriT~~~y~PNgs~Da~LAYKLlvQTG~~~~P~D~~~~t~~rLV~~dGiIn 924 (1215)
T TIGR00918 845 NGQLPRMWLHYFRDWLQGLQKAFDEDWRDGRITKENYRPNGSDDAVLAYKLLVQTGDRDKPVDKEQLTTQRLVEADGIIN 924 (1215)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 89885033789999988899987777524861001278987527899999875168767774577777665221047776
Q ss_pred ----------------------------------------------------------------------HH---HHHHH
Q ss_conf ----------------------------------------------------------------------23---56788
Q gi|254780925|r 630 ----------------------------------------------------------------------AQ---TRVLE 636 (833)
Q Consensus 630 ----------------------------------------------------------------------~~---~~~~~ 636 (833)
T Consensus 925 p~aFY~yL~aWvsnDp~ayaASQan~yP~ppewlHd~~d~~p~~RL~IP~a~PleyAQfPFyL~GL~~T~~fveaIe~~R 1004 (1215)
T TIGR00918 925 PNAFYIYLSAWVSNDPVAYAASQANLYPEPPEWLHDKNDYDPENRLRIPAAEPLEYAQFPFYLNGLRETSDFVEAIEKVR 1004 (1215)
T ss_pred HHHHHHHHHEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf 13444121003100036775400247833753357865678602237875677213110246422035568999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7775410124443333211121013578998457999999999999999999-9-9989999999999999999999997
Q gi|254780925|r 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-K-WYFALGAITTLILDITKTLGFFALF 714 (833)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~al~~I~i~i~~rf-~-~~~~i~aiial~~~v~~~~g~~~~~ 714 (833)
T Consensus 1005 a~c~~y~~~G~~~YPsG~PFlFWEQY~gLR~~lll~~~~vL~ctflvcallLLnpWt-Aglivlvl~~mtvelFG~Mgll 1083 (1215)
T TIGR00918 1005 AICNNYEQAGLPSYPSGYPFLFWEQYLGLRHSLLLSISVVLLCTFLVCALLLLNPWT-AGLIVLVLALMTVELFGIMGLL 1083 (1215)
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998876418866477988602688899999999999999999999999998623468-9999999999999997578886
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCEEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-H
Q ss_conf 571456999999999975335747887210355550577999899999999877799999999999999999970534-3
Q gi|254780925|r 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS-V 793 (833)
Q Consensus 715 g~~~~~~~i~~~l~iiG~svd~~I~~~~RirE~~~~~~~~~~~~~~v~~~~~~~~~~~i~ts~tt~~~~~~l~~~~~~-~ 793 (833)
T Consensus 1084 GIKLSAiPvVILiaSVGigveFtVhiaLgF------lT~~G~rn~Ra~laleh~faPv~dGa~stllgvlMLagS~FdFi 1157 (1215)
T TIGR00918 1084 GIKLSAIPVVILIASVGIGVEFTVHIALGF------LTAIGDRNRRAVLALEHMFAPVLDGALSTLLGVLMLAGSEFDFI 1157 (1215)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 477877778876766132057889999999------86015635899999874311466789999999998427986234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56638999999999999999999999999
Q gi|254780925|r 794 IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 (833)
Q Consensus 794 ~~~f~~~~~~gvi~~~~~sifi~~~~~~~ 822 (833)
T Consensus 1158 vRyFfa~L~vlt~lG~lngLvllPvLLS~ 1186 (1215)
T TIGR00918 1158 VRYFFAVLAVLTVLGVLNGLVLLPVLLSI 1186 (1215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78899999999999998789999999841