HHsearch alignment for GI: 254780925 and conserved domain: TIGR00918

>TIGR00918 2A060602 transmembrane receptor Patched; InterPro: IPR004766 Patched (Ptc) is a Drosophila melanogaster (Fruit fly) membrane protein that plays a critical role in patterning embryonic and imaginal tissues. It constitutively inactivates the transcription of genes wingless, decapentaplegic, and patched itself. The secreted protein, hedgehog (Hh) induces transcription of genes by opposing the patched signaling pathway . In humans, mutations affecting patched (Ptc) or smoothened (Smo) homologues that trigger ligand-independent activity of the Hedgehog (Hh) signalling pathway are associated with tumours such as basal cell carcinoma (BCC) and medulloblastoma . Patched is associated with a complex belonging to the hedgehog pathway. Members of the complex include cubitus interruptus, sex-lethal, patched and smoothened. The complex is present at the plasma membrane and the association of patched changes depending on the activation state of the pathway . ; GO: 0008158 hedgehog receptor activity, 0016021 integral to membrane.
Probab=99.19  E-value=7.9e-09  Score=68.76  Aligned_cols=204  Identities=11%  Similarity=0.131  Sum_probs=142.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             443210135788765444321100001223333--320110011024578888889999999999997303203566667
Q gi|254780925|r  316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS  393 (833)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~~r~~li~~ia  393 (833)
T Consensus       991 ~~T~~fveaIe~~Ra~c~~y~~~G~~~YPsG~PFlFWEQY--~gLR~~lll~~~~vL~ctflvcallLLnpWtAglivlv 1068 (1215)
T TIGR00918       991 RETSDFVEAIEKVRAICNNYEQAGLPSYPSGYPFLFWEQY--LGLRHSLLLSISVVLLCTFLVCALLLLNPWTAGLIVLV 1068 (1215)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3556899999999999887641886647798860268889--99999999999999999999999986234689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77777889999999987665578999999865335789999999876310255579999999999999999765568999
Q gi|254780925|r  394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA  473 (833)
Q Consensus       394 Ipisii~tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~  473 (833)
T Consensus      1069 l~~mtvelFG~MgllGIKLSAiPvVILiaSVGigveFtVhiaLgFlT~~--G~rn~Ra-~laleh~faPv~dGa~stllg 1145 (1215)
T TIGR00918      1069 LALMTVELFGIMGLLGIKLSAIPVVILIASVGIGVEFTVHIALGFLTAI--GDRNRRA-VLALEHMFAPVLDGALSTLLG 1145 (1215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC--CCHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999975788864778777788767661320578899999998601--5635899-999874311466789999999


Q ss_pred             HHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             88876145544-3114788778889987777511399999986136677556
Q gi|254780925|r  474 TVVLFFFGGGA-VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID  524 (833)
Q Consensus       474 ~~~l~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (833)
T Consensus      1146 vlMLagS~FdFivRyFfa~L~vlt~lG~lngLvllPvLLS~~GP~pEv~p~~ 1197 (1215)
T TIGR00918      1146 VLMLAGSEFDFIVRYFFAVLAVLTVLGVLNGLVLLPVLLSILGPEPEVVPLE 1197 (1215)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC
T ss_conf             9984279862347889999999999999878999999984108850030256