HHsearch alignment for GI: 254780925 and conserved domain: pfam00873
>pfam00873 ACR_tran AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Probab=100.00 E-value=0 Score=626.72 Aligned_cols=787 Identities=14% Similarity=0.082 Sum_probs=559.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf 97517999999999999999996310243404457420476742211012785499998433675189887899999998
Q gi|254780925|r 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF 80 (833)
Q Consensus 1 mr~~~~~~il~~~i~l~g~~~~lp~~~~~~~~~~~P~~~p~~~i~lGLDL~GG~~v~~~~~~~~~~~~~v~~~~e~l~~~ 80 (833)
T Consensus 6 ~~~p~~~~~l~~~i~l~G~~~-----~~~lp~~~~P~~~~~~i-~--------V~~~~pGasp~~vE~~vt~piE~~l~~ 71 (1021)
T pfam00873 6 IDRPIFALVLAIAILLAGILS-----FFSLPVDQYPEIAPPTV-Q--------VSTSYPGASPETVEDTVTQPIEQAMNG 71 (1021)
T ss_pred HHCHHHHHHHHHHHHHHHHHH-----HHHCCHHHCCCCCCCEE-E--------EEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 729899999999999999999-----98396632899998479-9--------999869999999999989999999808
Q ss_pred HHHCCCEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEECCCCCCCHHHH
Q ss_conf 62059126589831997999966976789999999999998744176544577314236775116875134566512689
Q gi|254780925|r 81 LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 (833)
Q Consensus 81 v~~~~~~~sts~~~~~~I~V~f~~~~d~~~a~~~v~~~v~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (833)
T Consensus 72 v~gv~~i~S~s~~g~s~i~v~f~~~~d~~~~~~~v~~~v~~~~~~lP~~~~~p~i~~~~~~~~~v~~~~l~~~~~~~~~~ 151 (1021)
T pfam00873 72 LDGLKYMSSQSSYGLSSITLTFEDGTDIDIARVQVQNRLQLATPLLPEGVQRPGISVIKTSLGPIMVLAVTSPDGSYTQT 151 (1021)
T ss_pred CCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCHH
T ss_conf 99807999999589199999997899989999999999999886099766787788624887527999999389997999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 87788876311231034654210125730123334689889854126989998887400123444555653346666510
Q gi|254780925|r 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 (833)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (833)
T Consensus 152 ~l~~~~~~~l~~~L~~v~gV~~V~~~G~~~~~i~I~~d~~~L~~~gls~~~v~~~i~~~n~~~~~G~~~~~~~~~~i~~~ 231 (1021)
T pfam00873 152 DLRDYADTNIKDQLSRIPGVGDVQLFGGSEYAMRIWLDPQKLNSYGLTLTDVVSALKEQNVQVGAGQLEGQGLNALIRAQ 231 (1021)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCEEEEEEEC
T ss_conf 99999999999998479790699975897069999978999988698999999999850022457168408679999807
Q ss_pred EECCCCCEEECCEECCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 00267501202111011112233332210000123322101100100000123221100000013320001233344321
Q gi|254780925|r 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320 (833)
Q Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (833)
T Consensus 232 ~~~~~~~di~~-------------------i~i~~~~g-~~i~L~DvA~V~~~~~~~~~~~~~nG~~av~l~V~~~~~an 291 (1021)
T pfam00873 232 GRLQSAEDFEK-------------------IIVKNQDG-SPVRLRDVATVELGAELYRGFATFNGKPAVGLGVQKLPGAN 291 (1021)
T ss_pred CCCCCHHHHHH-------------------HHCCCCCC-CEEEECHHCEEEECCCCCCEEEEECCCCCEEEEEEECCCCC
T ss_conf 75089999987-------------------50438999-18985100022204555420267717652157664058999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 01357887654443211000012233333201100110245788888899999999999973032035666677777788
Q gi|254780925|r 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 (833)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvvvvv~l~l~~~r~~li~~iaIpisii~ 400 (833)
T Consensus 292 ~i~v~~~v~~~l~~~~~~lp~~~~~~~~~d~s~~i~~~i~~l~~~~~~g~~lv~~vl~lfL~~~r~aliv~~~IP~si~~ 371 (1021)
T pfam00873 292 AIETADAVRAKLAELKPTFPQGVEIVVPYDTTPFVRASIEEVVKTLLEAIVLVILVMFLFLQNFRATLIPAIAVPLSLLG 371 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHH
T ss_conf 99999999999998886488886489995245889999999999999999999999999850230024776513378999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999987665578999999865335789999999876310-255579999999999999999765568999888761
Q gi|254780925|r 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 (833)
Q Consensus 401 tl~~l~~~G~tLn~~sl~gl~~~~g~~vd~~i~~~e~~~~~~~-~~~~~~~a~~~~~~~~~~~i~~~~~t~~~~~~~l~~ 479 (833)
T Consensus 372 ~~~~m~~~g~slN~isL~glilalGmlVDdaIVv~Eni~r~l~~~G~~~~~aa~~g~~ev~~pv~~stlTti~aFlPl~f 451 (1021)
T pfam00873 372 TFAVMKAFGFSINTLTLGGLVLAIGLVVDDAIVVVENIERGLAEEGLKPLEAAYKSMGEIGGALVAIALVLSAVFLPIAF 451 (1021)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHEEEEEECCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999983705437789877742689970767887728889987699989999997666646888899999999988886
Q ss_pred CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCE----EECCCCCEEEE
Q ss_conf 455---443114788778889987777511399999986136677556433--322101012200----10022210221
Q gi|254780925|r 480 FGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP--LSRFFLIPDCIA----IQFMRARFWGV 550 (833)
Q Consensus 480 ~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----i~f~~~~~~~~ 550 (833)
T Consensus 452 ~~G~~G~~~~~i~~tv~~aL~~SL~vAl~ivP~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~~L~~~l~~r~~~~ 531 (1021)
T pfam00873 452 LGGVTGRIFRQFAITIVLAILLSVLVALTLTPALCATLLKARREPKHGGFFRWFNRMFDRLTRGYAKLLGKVLRHRGVVL 531 (1021)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26753113343488999999999999999999999985578876432115565568999999999999999995459999
Q ss_pred ECCHHHCCCCCCCCCCCCCCC-CCCCCCCEEEEEECCCCCCHHHH-----------------------------------
Q ss_conf 100110021222112222345-55556603799971775788999-----------------------------------
Q gi|254780925|r 551 GISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVV----------------------------------- 594 (833)
Q Consensus 551 ~~s~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 594 (833)
T Consensus 532 ~~~~~l~~~s~~l~~~l~~~ffP~~d~~~~~v~v~~p~Gtsle~t~~~~~~ie~~l~~~~~v~~v~~~iG~~~~~~~~~~ 611 (1021)
T pfam00873 532 LVALLLVVGSLWLFVRIPKEFLPEEDEGVFVTSAQLPPGASLDQTQRVLKQVEKILKEKPEVESVFAVTGFAFAGDNNGP 611 (1021)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 99999999999998547877789778784599997799999999999999999998549993699999655677888886
Q ss_pred -----------------------------HHHHHHHHHCCC---------------------------------------
Q ss_conf -----------------------------885555420023---------------------------------------
Q gi|254780925|r 595 -----------------------------RSNLESLQIGDI--------------------------------------- 606 (833)
Q Consensus 595 -----------------------------~~~~~~~~~~~~--------------------------------------- 606 (833)
T Consensus 612 ~~~~~~v~L~~~~~r~~~~~~~~~i~~~~r~~l~~~pg~~~~~~~~~~~~~~~~~~g~~~~i~i~l~G~d~~~L~~~a~~ 691 (1021)
T pfam00873 612 NSGDVFITLKPWKERPGPEQTVEAIIERLRKALAKIPGANVFLFQPPAIRELGTASGFRSDLQVKIFGDGLDALDEARNQ 691 (1021)
T ss_pred CEEEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
T ss_conf 40699999736898588545799999999998730788189985574101457788865279999479999999999999
Q ss_pred --------------------------------------------------------CCCCCCCCCCEEEEEE--------
Q ss_conf --------------------------------------------------------3323568764024431--------
Q gi|254780925|r 607 --------------------------------------------------------SFQNFDGEKNFLVRLQ-------- 622 (833)
Q Consensus 607 --------------------------------------------------------~~~~~~~~~~~~~~~~-------- 622 (833)
T Consensus 692 v~~~L~~~~gv~~v~~~~~~~~~el~i~vdr~~a~~~Gls~~~Va~~l~~a~~G~~v~~~~~~~~~i~I~vr~~~~~~~~ 771 (1021)
T pfam00873 692 ILAALAQLPGLADVRPNGQEDQPQLQVNIDREKAARLGVSIADINQTVSTALGGSYVNDFIERGRVYDVVVQLPEDFRSS 771 (1021)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHCCCCCCCEECCCCEEEEEEEECCHHHHHH
T ss_conf 99998359981787546567981899996467798679989999999998538875540114881888999828666311
Q ss_pred ----------------------------------------------CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf ----------------------------------------------1555420235678877754101244433332111
Q gi|254780925|r 623 ----------------------------------------------YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 (833)
Q Consensus 623 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (833)
T Consensus 772 ~~~L~~l~I~s~~G~~VpLs~la~i~~~~~~~~I~R~dg~r~i~V~a~i~~~~~~~~~~~~v~~~~~~~~l-P~g~~~~~ 850 (1021)
T pfam00873 772 PEDIGQLYVRNPLGKMVPLSAFATIEWGYGPPSIERYNGFRSIVISGNVAPGDSLGDAMEAIAQIAKQVKL-PPGYGYTW 850 (1021)
T ss_pred HHHHHCEEEECCCCCEEEHHHEEEEEEECCCHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC-CCCEEEEE
T ss_conf 23143227643689588854738999814807873016827999999957988789999999999861689-99728996
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 21-0135789984579999999999999999999-998999999999999999999999757145699999999997533
Q gi|254780925|r 657 VG-PKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 (833)
Q Consensus 657 v~-~~~~~~~~~~~~~a~~~al~~I~i~i~~rf~-~~~~i~aiial~~~v~~~~g~~~~~g~~~~~~~i~~~l~iiG~sv 734 (833)
T Consensus 851 ~Ge~~~~~e~~~~l~~~~~~ai~lIyliL~~~F~S~~~pliIl~~IP~a~iG~~lgl~~~g~~~~~~s~iG~i~L~GIvV 930 (1021)
T pfam00873 851 TGQSYQEQLAGNQLPILIALALLLVFLVLAALYESWSDPLSIMLTVPLALVGALLALWLRGLPNSVYAQVGLITLIGLAV 930 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 62899999999999999999999999999999807999999999999999999999999878813999999999999999
Q ss_pred CCEEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57478872103555505779998999999998777999999999999999999705---343566389999999999999
Q gi|254780925|r 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASS 811 (833)
Q Consensus 735 d~~I~~~~RirE~~~~~~~~~~~~~~v~~~~~~~~~~~i~ts~tt~~~~~~l~~~~---~~~~~~f~~~~~~gvi~~~~~ 811 (833)
T Consensus 931 nn~Ivlvd~~n~~~~~--~g~~~~~Aii~a~~~RlRPIlmTtlTTi~GllPla~~~~~g~~~~~pmA~~ii~GL~~st~l 1008 (1021)
T pfam00873 931 KNAILMVEFANELREQ--EGKSLVEAILEAAKLRLRPILMTALAAILGVLPLAISTGAGSELQQPLGIVVFGGLITSTVL 1008 (1021)
T ss_pred HCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHH
T ss_conf 4730679999999997--69999999999999978899999999999999998754895786506599999999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999986
Q gi|254780925|r 812 SIFIAAPILLFIY 824 (833)
Q Consensus 812 sifi~~~~~~~~~ 824 (833)
T Consensus 1009 tL~~vP~~y~lf~ 1021 (1021)
T pfam00873 1009 TLLVVPVFYVLFH 1021 (1021)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999859