PSIBLAST alignment of GI: 254780925 and protein with PDB id: 1iwg
>gi|24987358|pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux Transporter Acrb Length = 1053
>gi|114793710|pdb|2DHH|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A Functionally Rotating Mechanism Length = 1053
Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats.
Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)
Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
+ ++ +I G L L + + ++P+ P + +
Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49
Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
V + ++ + + + +ITL+F + +V
Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109
Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
LQ L + ++ + +++ + S + D I +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169
Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
+ +P+ L + T + N G
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228
Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
+ + ++ + + R I
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275
Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
+ + T A + +
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335
Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395
Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
G+VL IGL VD I+V E + + + + + + V
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455
Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
+ FFGG R F+IT+ ++ +S+ A+ + A+ + +
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515
Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
+ D + + V I+ + + + +G
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575
Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
V + L + ++ + + E F V G +K
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635
Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
+ ++ + + ++ +
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665