BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str. psy62] (833 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str. psy62] gi|254040602|gb|ACT57398.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str. psy62] Length = 833 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 833/833 (100%), Positives = 833/833 (100%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV Sbjct: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ Sbjct: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST Sbjct: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ Sbjct: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG Sbjct: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS Sbjct: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI Sbjct: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF Sbjct: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI Sbjct: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES Sbjct: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK Sbjct: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL Sbjct: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF Sbjct: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI Sbjct: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 >gi|222084836|ref|YP_002543365.1| protein-export membrane protein SecD [Agrobacterium radiobacter K84] gi|221722284|gb|ACM25440.1| protein-export membrane protein SecD [Agrobacterium radiobacter K84] Length = 852 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 435/832 (52%), Positives = 599/832 (71%), Gaps = 4/832 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + WLV LYS+I +G L+ALPN LPQS L + P+ +P +++ LGLDLRGGS+LVLEV Sbjct: 1 MRTSRWLVALYSVIIVLGFLVALPNVLPQSTLSKIPNWLPHSQVPLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 DE D NG LQ + R L+ + I S+ + ++I ++ D + ++ Sbjct: 61 DEKDLTNGRLQSLQQDSRRVLRDKNILTRSIVRNGDQIVVTLTDPTQSGDAVTQLQTLAN 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + S L+ + +L + I++ S+ I + A++QS+E+IR+R+DQ+G++E T Sbjct: 121 TITSGLSAG-QSDLTIAPNAGAITMSFSKAGIASNVDSAVQQSLEVIRKRVDQVGVAEPT 179 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQR+G +R+L+QLPG QDPSRLR+LLG+TAKMSFH + N GV L+D G Sbjct: 180 IQRVGPNRVLVQLPGAQDPSRLRELLGSTAKMSFHLLADNVDPNNPGPGVTILKDEQGQS 239 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 Y V D++E+SG L A +FDP TH+P+V FD GA RF E+TR+N+GKP A+VLD Sbjct: 240 YPVLDRIELSGDRLTDARVSFDPNTHEPLVTFRFDSAGANRFAEITRENVGKPFAIVLDN 299 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +VL+AP I + I G QISGNFT ++A LAA+LRAG+LP KL ++EER VGADLG+D+ Sbjct: 300 KVLSAPNIREPITGGSGQISGNFTADSATTLAALLRAGALPAKLTVIEERTVGADLGADA 359 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I KG + + G VL+ F+ VLYG WG++A+ ++ ++ ILT + L+L+GATLTLP IAGI Sbjct: 360 IQKGIYSGLVGFVLVAAFIFVLYGAWGILANVALLIHTILTFSALTLVGATLTLPGIAGI 419 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VLGIGLAVD+N+L+NERIREE RK + F ++D GF +AYSTI D N+TALIA +LF+F Sbjct: 420 VLGIGLAVDANVLINERIREETRKGRGAFAAIDNGFRKAYSTIIDGNMTALIAAAILFYF 479 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G G VRGFA+TMGL ++ISMFT+++ VR +MI I R +K+K ++I PL F P I Sbjct: 480 GSGPVRGFAVTMGLGLIISMFTSVAFVRVVMIAITRRRKLKVLNIRPLIPFS--PYDKHI 537 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 FM+ARF+GV +S + SI S+ L GLNYG+DF+GGIQ+ V DLS R L + Sbjct: 538 HFMKARFFGVTVSAILSIASVVLFIHPGLNYGVDFRGGIQMSVKTKDAADLSTFREGLNT 597 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 L +G+IS Q+F + LVR Q Q G AQT + +K +IT+I P +TI+ T+++GPK Sbjct: 598 LGLGEISLQSFGDNNSILVRAQRQDGGEEAQTAAVTKLKAEITKIDPAATIEGTDVIGPK 657 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 +S EL GI+ V+I+++AML+YIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL Sbjct: 658 VSGELAWAGILSVVIASLAMLVYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 717 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY S+ RD+IDKSINETL RS+YT+ AF Sbjct: 718 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLRDIIDKSINETLARSLYTNATAF 776 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++A+ Sbjct: 777 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAK 828 >gi|13471172|ref|NP_102741.1| bifunctional preprotein translocase subunit SecD/SecF [Mesorhizobium loti MAFF303099] gi|14021916|dbj|BAB48527.1| probable protein-export membrane protein [Mesorhizobium loti MAFF303099] Length = 849 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 321/833 (38%), Positives = 506/833 (60%), Gaps = 17/833 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + + +IL + I +++A PN P S L + PS +PK +++LGLDL+GGSH++LE++++ Sbjct: 5 SRFKMILIWVAVAITVILAAPNLFPASTLAQLPSWVPKRQMTLGLDLQGGSHILLEMNQN 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 D + L+ DE+R+ L+ IG + + + D + + V Sbjct: 65 DLIKDRLETTRDEIRTLLRDAKIGYTGLAGTGRTLQVRITDPAQLDAAKKALKTLTDPVA 124 Query: 124 SKLNVDPKKNLLVTTTEKE--ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L + + + ++ I S A+ QS+E++ +R++++G +E + Sbjct: 125 AGLFSGGSIQEMSLDDSEPGLLKFTVTDAGIKYRTSTALAQSIEVVERRVNELGTTEPIV 184 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234 QR G RIL+Q+PG QDP RL+++LG TAK++F V + + + G + Sbjct: 185 QRQGDDRILVQVPGLQDPQRLKEILGQTAKLTFQMVDQSMPVQDALKGRPPAGSSVLYSQ 244 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 D YL+E++V +SG +L A A ++ + ++PVV FD GA RF + T N+GK Sbjct: 245 DDPPVPYLIENRVIVSGENLVDAQATYNSQNNEPVVSFRFDSKGAARFGQATSQNVGKLF 304 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A++LD +V++AP I + I G QISGNFT ++A LA +LRAG+LP L ++EER VG Sbjct: 305 AIILDNQVISAPQIREPILGGTGQISGNFTAQSANDLAVLLRAGALPATLTVIEERTVGP 364 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG DSI+ G A + G +L+V FM V YG G +A+ ++ ++V + + LLSLLGATLTL Sbjct: 365 GLGQDSIHAGKVAGIIGSILVVAFMFVAYGFLGFLANIALAVHVAMIVGLLSLLGATLTL 424 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL IG+AVDSN+L+ ERIREE R +SV ++D GFS+A +TI DSN+T+LIAT Sbjct: 425 PGIAGIVLTIGMAVDSNVLIYERIREERRAGRSVIQAIDTGFSKALATIVDSNVTSLIAT 484 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 VVLF+ G G V+GFAIT + IL ++FTA + R ++ +R + K + P++ I Sbjct: 485 VVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPKELPKAPVT---FI 541 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSV 593 P I FM R W +S S+ S+ L T +NYGIDFKGG + V + +L Sbjct: 542 PPGTKIPFMGIRRWTFALSSFLSVLSVVLFMTVDINYGIDFKGGSMIEVKSKSGDANLGD 601 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 +R+ L L IG++ Q F + L+R+ Q G A+ V++ V+ ++ + + Sbjct: 602 IRARLMELNIGEVQVQQFGAPNDVLIRVGTQDGGENAEQTVIDKVRGELQDQYDF---RR 658 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 E+VGP +S EL ++G + ++++ + +L+Y+W RF+W FA+GAI + D+ TLGFF + Sbjct: 659 VEVVGPTVSGELAKQGTIAMLVALVGILVYVWFRFEWQFAVGAIVATVHDVVMTLGFFVI 718 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G+EFN +++AA+LT+IGYS+ND +VVYDR+R++++ Y + L++ +INETL R+ Sbjct: 719 TGLEFNQSSLAAILTIIGYSLNDTIVVYDRVREDLRKY-KRMPLPQLLNNAINETLSRTT 777 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TS+ +++L + ++GG VI SF + M FG+V SSIFIAAP+L+ Sbjct: 778 LTSVTTILALLALVLFGGEVIRSFTMAMLFGVVFGTYSSIFIAAPLLILFKLR 830 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 78/175 (44%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + ++ I G V II +I ++ ++++ + + A L + + +G +L G Sbjct: 361 TVGPGLGQDSIHAGKVAGIIGSILVVAFMFVAYGF-LGFLANIALAVHVAMIVGLLSLLG 419 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++Y+R+R+ + S ID ++ L V + Sbjct: 420 ATLTLPGIAGIVLTIGMAVDSNVLIYERIREERRA---GRSVIQAIDTGFSKALATIVDS 476 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ + I+ + + G + FAI A GI+ ++ ++ Sbjct: 477 NVTSLIATVVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPK 531 >gi|319783200|ref|YP_004142676.1| protein-export membrane protein SecD [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169088|gb|ADV12626.1| protein-export membrane protein SecD [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 849 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 322/833 (38%), Positives = 506/833 (60%), Gaps = 17/833 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + + +IL + I +++A PN S L + P+ +PK +++LGLDL+GGSH++LE++++ Sbjct: 5 SRFKMILIWVAVAITVILAAPNLFSASTLAQLPNWVPKRQMTLGLDLQGGSHILLEMNQN 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 D + L+ DE+R+ L+ IG + + + D + + V Sbjct: 65 DLIKDRLETTRDEIRTLLRDAKIGYTGLAGTGRTLQVRITDPAQIDAAKTALKTLTDPVA 124 Query: 124 SKLNVDPKKNLLVTTTEKEISIVL--SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L + + + + I S A+ QS+E++ +R++++G +E + Sbjct: 125 AGLFTGGSVQEMTLDDSEPGLLKFNVTDAGIKYRTSTALTQSIEVVERRVNELGTTEPIV 184 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234 QR G RIL+Q+PG QDP RL+++LG TAK++F V + + + G + Sbjct: 185 QRQGDDRILVQVPGLQDPQRLKEILGQTAKLTFQMVDQSMPVQDALNGRPPAGSSVLYSQ 244 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 D YL+E++V +SG +L A A ++ + ++PVV FD GA RF + T N+GK Sbjct: 245 DDPPVPYLIENRVIVSGENLVDAQATYNSQNNEPVVSFRFDSKGAARFGQATAQNVGKLF 304 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A++LD +V++AP I + I G QISGNFT ++A LA +LRAG+LP L ++EER VG Sbjct: 305 AIILDNQVISAPQIREPILGGTGQISGNFTAQSANDLAVLLRAGALPATLTVIEERTVGP 364 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG DSI+ G A + G +L+V FM V YG G +A+ ++ ++V + + +LSLLGATLTL Sbjct: 365 GLGQDSIHAGKVAGIIGSILVVAFMFVAYGFLGFLANIALAVHVAMIVGVLSLLGATLTL 424 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL IG+AVDSN+L+ ERIREE R +SV ++D GF++A +TI DSNIT+LIAT Sbjct: 425 PGIAGIVLTIGMAVDSNVLIYERIREERRAGRSVIQAIDTGFTKALATIVDSNITSLIAT 484 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 VVLF+ G G V+GFAIT + IL ++FTA + R ++ +R + K + P++ + Sbjct: 485 VVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPKELPKAPVT---FV 541 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSV 593 P I FM R W +S SI S+ L T G+NYGIDFKGG + V A DL+ Sbjct: 542 PPGTKIPFMGIRRWTFTLSSALSILSVVLFMTVGINYGIDFKGGSLIEVQAKSGNADLAD 601 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 +R+ L L IG++ Q F + L+R+ Q G A+ V++ V+ ++ + + Sbjct: 602 LRARLTELNIGEVQVQQFGTPNDVLIRVGTQDGGENAEQTVIDKVRGELQDNYDF---RR 658 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 E+VGP +S EL ++G + ++I+ + +LIY+W RF+W FA+GAI + D+ TLGFF + Sbjct: 659 VEVVGPTVSGELAKQGTIAMLIALLGILIYVWFRFEWQFAVGAIVATVHDVVMTLGFFVI 718 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G+EFN +++AA+LT+IGYS+ND +VVYDR+R++++ Y + L++ +INETL R+ Sbjct: 719 SGLEFNQSSLAAILTIIGYSLNDTIVVYDRVREDLRKY-KRMPLPQLLNNAINETLSRTT 777 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TS+ +++L + ++GG VI SF + M FG++ SSIFIAAP+L+ Sbjct: 778 LTSVTTILALLALVLFGGEVIRSFTMAMLFGVIFGTYSSIFIAAPLLILFKLR 830 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 76/173 (43%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I G V II +I ++ ++++ + + A L + + +G +L G Sbjct: 363 GPGLGQDSIHAGKVAGIIGSILVVAFMFVAYGF-LGFLANIALAVHVAMIVGVLSLLGAT 421 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+R+R+ + S ID + L V +++ Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREERRA---GRSVIQAIDTGFTKALATIVDSNI 478 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + I+ + + G + FAI A GI+ ++ ++ Sbjct: 479 TSLIATVVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPK 531 >gi|222106993|ref|YP_002547784.1| protein-export membrane protein SECD [Agrobacterium vitis S4] gi|221738172|gb|ACM39068.1| protein-export membrane protein SECD [Agrobacterium vitis S4] Length = 839 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 454/832 (54%), Positives = 595/832 (71%), Gaps = 6/832 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ +PWLV Y +I G+L ALPN L + L+ FPS PK++++LGLDLRGGSHLVLEV Sbjct: 1 MKTSPWLVATYVVIIAFGILTALPNILSPNTLNSFPSWFPKDKVALGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D D V LQ + R L+ +G+ ++R+ + + ++ + + + Sbjct: 61 DSADLVQERLQSLIQDSRRALRDDGVDAATVRKSGSSLVVTLQSAEQRAAALTALGKLAH 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 V + +L T ISI L++ I + +EQS+EIIRQRIDQ+G++E T Sbjct: 121 PVG----LTGAPDLAFTGEGATISITLAEAGITDRANAGVEQSLEIIRQRIDQVGVAEPT 176 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH-KVLPNNSKKGFMFGVRFLRDSDGN 239 IQR+G RIL+QLPG QDP+R+R+LLG+TAKMSFH GV L+D +G Sbjct: 177 IQRIGGDRILVQLPGTQDPARIRELLGSTAKMSFHMLSENATDGAAVPRGVTMLKDDEGR 236 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 Y V+D+VE++G L A FDP T++P+V FD GA RF E+TR N+GKP A+VLD Sbjct: 237 TYPVDDRVELAGDRLTDARVGFDPNTNEPLVSFRFDTAGAARFAEITRANVGKPFAIVLD 296 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 +VL+APVI + I G QISGNFT+E+A LAA+LRAG+LP+KL ++EER VGADLG+D Sbjct: 297 DKVLSAPVIREPITGGSGQISGNFTVESATDLAALLRAGALPVKLTVIEERTVGADLGAD 356 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I G + G L+V FMIVLYG WG+VA+ ++ LNVILT A LSL+GATLTLP IAG Sbjct: 357 AIKMGVYTGLIGFALVVGFMIVLYGGWGIVANLALGLNVILTFACLSLIGATLTLPGIAG 416 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVLGIGLAVD+N+L+NERIREE RK + +LD GF RAYSTI DSN+TALIAT++LF+ Sbjct: 417 IVLGIGLAVDANVLINERIREETRKGRGAMAALDAGFRRAYSTIIDSNVTALIATLLLFW 476 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539 FG G VRGFAITMGL I ISMFTA+S+VR +M+ IIR K+K +DI PL LIPD Sbjct: 477 FGSGPVRGFAITMGLGIAISMFTAVSVVRVVMLAIIRRYKLKRLDIKPLLPLQLIPDGTR 536 Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I+FMRARF G+GIS SI S+ L T GLNYG+DF+GGIQL V+ DL+ RS L+ Sbjct: 537 IRFMRARFVGIGISAFLSIASLILFVTPGLNYGVDFRGGIQLEVVTQDRADLAAFRSGLD 596 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 L +GD++ Q F ++ LVR++ QPG AQT +E ++ ++ I ++++ TE+VGP Sbjct: 597 GLGLGDVTLQEFGDARHLLVRVERQPGGEEAQTAAVERLRTEVKVIDATASVERTEVVGP 656 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+S EL GI+ V+++++AML YIW RF+W FA+GAI TLILD+TKT+GFFAL G++FN Sbjct: 657 KVSGELATAGILSVVLASLAMLGYIWARFEWPFAVGAIATLILDVTKTIGFFALTGLDFN 716 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LTA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY ++ R+LID SINETL RS+YTS A Sbjct: 717 LTAIAALLTLVGYSVNDKVVVYDRMRENMRLY-KTMPLRELIDLSINETLARSLYTSATA 775 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+S+LPMA+WGGS + SFA+PM FGI +AASSS+FIAAPILLF+ DWR K A Sbjct: 776 FLSLLPMAIWGGSAVESFAVPMIFGIAIAASSSVFIAAPILLFLGDWRRKRA 827 >gi|256061396|ref|ZP_05451540.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella neotomae 5K33] gi|261325399|ref|ZP_05964596.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella neotomae 5K33] gi|261301379|gb|EEY04876.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella neotomae 5K33] Length = 845 Score = 486 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 406/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+R + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+L IG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILSIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLARLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 124 bits (309), Expect = 9e-26, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILSIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|304391787|ref|ZP_07373729.1| protein-export membrane protein SecD [Ahrensia sp. R2A130] gi|303296016|gb|EFL90374.1| protein-export membrane protein SecD [Ahrensia sp. R2A130] Length = 868 Score = 484 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 310/852 (36%), Positives = 496/852 (58%), Gaps = 34/852 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W + +G+++ALPN Q L P MPK +ISLGLDL+GG HL +++ Sbjct: 2 LHFSRWKMFSILAAVFLGIMLALPNMFSQEQLKALPDWMPKKQISLGLDLQGGVHLQVKI 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEG---IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + DD V L+ ++R ++ +G +R N +T+ + ++++ Sbjct: 62 ERDDIVAERLEALVSDIRQQMRDRTQGPLGYNGIRASGNGVTVRLLSAADAPAAIERLST 121 Query: 118 FLQGVN--SKLNVDPKKNLLVTTTEKEISIVL--SQNNIDQVISHAIEQSMEIIRQRIDQ 173 + V S L + + + + + + ID+ + A+ QS+E+IR+R+D+ Sbjct: 122 LTEPVTNASSLLGGLGVVEVEQSAPSDGVLRYDLTDDGIDERLRSAVSQSIEVIRRRVDE 181 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 +G +E IQR G R+++Q PG DP RL++++GTTAK+ FH V + S + G R Sbjct: 182 LGTTEPVIQRQGVDRVIVQAPGFDDPERLKEVIGTTAKLGFHIVDNSMSAADALSGPRPP 241 Query: 234 ----------RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283 +S L++ +V ISG L A FD +T++P+V F+ ++ F Sbjct: 242 VGTMVVPTSDPESGEANVLIQRRVYISGEDLVDAQQGFDQRTNEPIVTFRFNNKASQAFC 301 Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343 + NIG A+VLD ++APVI AI G QISG+F ++A LA ++RAG+LP Sbjct: 302 RFSSGNIGSRFAIVLDDTSISAPVIRDAICGGSGQISGSFNAQSANDLAVLMRAGALPAD 361 Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403 + VEER VG+ LG DSI G A + +L+++FM++ YG G++A+ ++ NV + + Sbjct: 362 ITFVEERTVGSTLGEDSIAAGQFAALIAAILVIVFMLMAYGTLGIIANLALAANVFIIMG 421 Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463 LLS++GATLTLP IAGIVL +G+AVD+N+L+ ERIREE R +S+ ++D+GF +A TI Sbjct: 422 LLSVIGATLTLPGIAGIVLTMGMAVDANVLIYERIREEKRAGRSIMQAVDIGFRQAMGTI 481 Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 D+NIT LIA +LF+ G G +RGFA+T+ + I+ S+FTA ++ R M+ +R+K+ + + Sbjct: 482 LDANITTLIAAFILFYLGSGPIRGFAVTLAIGIVTSVFTAFTLTRLMVTLWLRWKRPRDL 541 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + ++ L+ + FM+ R +S + + S+ LNYGIDF+GG + Sbjct: 542 PGSLIT---LVKAGTHVNFMQWRKISFPLSAVLLVGSLATFVISNLNYGIDFQGGTLIEY 598 Query: 584 LAN---------RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 P DL+ VRS L L +GD+ F + L+R++ Q G A+ Sbjct: 599 RTKAATENATTLPPADLADVRSRLSELNLGDVQVSTFGQPEELLIRIESQDGGDNAEQSA 658 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L V+ + + E+VGP +S EL + G + V++S +A+++YIW+RF+W FAL Sbjct: 659 LAKVRSAM----DDHEFRRQEVVGPTVSGELAQAGTLAVLVSLLAIMVYIWLRFEWQFAL 714 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 GA+ + D+ T+G FAL IEF+L+++AA+LT++GYS+ND VVVYDR+R+N++ Y Sbjct: 715 GAVAATMHDVILTIGLFALLQIEFSLSSIAAILTIVGYSLNDTVVVYDRIRENLRKYKKK 774 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 R L+D SIN+TL R+V TS+ ++++ + +WGG V+ +F M FGI+V SSIF Sbjct: 775 -PIRTLLDMSINDTLSRTVITSLTTLLALVSLYIWGGEVLRNFTFAMIFGILVGTYSSIF 833 Query: 815 IAAPILLFIYDW 826 IAAPIL+ Sbjct: 834 IAAPILILFKLR 845 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 100/266 (37%), Gaps = 11/266 (4%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY------QPGD 627 + N + R + ++ + ++R G Sbjct: 281 QRTNEPIVTFRFNNKASQAFCRFSSGNIGSRFAIVLDDTSISAPVIRDAICGGSGQISGS 340 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 AQ+ V + + T VG + + I G +I+AI +++++ + Sbjct: 341 FNAQSANDLAVLMRAGALPADITFVEERTVGSTLGEDSIAAGQFAALIAAILVIVFMLMA 400 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + + A L ++ +G ++ G L +A ++ +G +V+ V++Y+R+R+ Sbjct: 401 YG-TLGIIANLALAANVFIIMGLLSVIGATLTLPGIAGIVLTMGMAVDANVLIYERIREE 459 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + S +D + +G + ++ I+ + G I FA+ +A GIV Sbjct: 460 KRA---GRSIMQAVDIGFRQAMGTILDANITTLIAAFILFYLGSGPIRGFAVTLAIGIVT 516 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + ++ F +++ ++ + + Sbjct: 517 SVFTA-FTLTRLMVTLWLRWKRPRDL 541 >gi|86356282|ref|YP_468174.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium etli CFN 42] gi|86280384|gb|ABC89447.1| protein-export translocase protein [Rhizobium etli CFN 42] Length = 849 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 439/830 (52%), Positives = 601/830 (72%), Gaps = 7/830 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR +PWLV+ Y++I +G+LIALPN L QS+L R PS +P ++SLGLDLRGGSHLVLEV Sbjct: 1 MRTSPWLVLTYTVIIVVGILIALPNVLSQSVLQRIPSWLPHEQVSLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 DE D LQ + R L+++GI ++ + QN+I ++ AD+ + + Sbjct: 61 DEADLTKERLQSLLQDARRVLREKGIQPKAVVRNQNQIVVTLADASQSDAAVTDLKTLAN 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + + L+ + +L VT I++ S I + +A++QS+E+IRQR+DQ+G+SE T Sbjct: 121 PIGTGLSAG-QADLTVTANGATITVAFSPAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQR+G++R+L+QLPG QDPS LR+LLG+TAKMSFH + PNN GV ++D +G Sbjct: 180 IQRIGANRVLVQLPGAQDPSHLRELLGSTAKMSFHMLAPNNQPGP---GVTMMQDDEGRS 236 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 Y V D+VEISG L+ A FDP TH+P+V FD GA RF E+TR N+G P A+VLD Sbjct: 237 YPVLDRVEISGDRLSDARVGFDPNTHEPIVSFRFDSAGATRFAEITRQNVGNPFAIVLDD 296 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +VL+APVI + I G QISGNF+ ++A LAAMLRAG+LP KL ++EER VGADLG+D+ Sbjct: 297 KVLSAPVIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G + + G +L+ F+ VLYG WG++A+ ++ ++ ILT + L+L+GATLTLP IAG+ Sbjct: 357 IKMGIYSGIVGFILVAAFIFVLYGTWGILANVALLIHTILTFSALTLVGATLTLPGIAGV 416 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VLGIGLAVD+N+L+NERIREE RK + F ++D GF+RAYSTI D N+TALIA +LF+F Sbjct: 417 VLGIGLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFWF 476 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G G VRGFA+TM L ++ISMFT+++ VR MI I R +K K ++I PL F P I Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFS--PYDKHI 534 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 QFM+ARF+GV +S L SI S+ L GLNYG+DF+GGIQ+ V DL+ R L+S Sbjct: 535 QFMKARFFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMSVKTKEAADLAKFREGLDS 594 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 L +G+I+ Q F K+ LVR Q Q G AQT + +K ++ +I P +T++ T+++GPK Sbjct: 595 LGLGEITLQTFGDNKSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPSATVEGTDVIGPK 654 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 +S EL GI+ V+I++ AMLIYIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL Sbjct: 655 VSGELASAGILSVVIASFAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY S+ R++IDKSINETL RS+YT+ AF Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++ Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRH 823 >gi|327191559|gb|EGE58571.1| protein-export translocase protein [Rhizobium etli CNPAF512] Length = 848 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 449/832 (53%), Positives = 604/832 (72%), Gaps = 7/832 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MRN+PWLV YS+I IGLLIALPN LPQS L R PS +P ++SLGLDLRGGSHLVLEV Sbjct: 1 MRNSPWLVFTYSVIIIIGLLIALPNALPQSTLQRLPSWLPHEQVSLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 DE D LQ + R L+++GI ++ + QN+I ++ AD+ + + Sbjct: 61 DEADLTKERLQSLLQDARRVLREKGIQPKAVVRNQNQIVVTLADAAQSDAAVTDLKTLAN 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +++ L+ + +L VT I+I S I + +A++QS+E+IRQR+DQ+G+SE T Sbjct: 121 PISTGLSAG-QADLAVTANGATITIGFSPAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQR+G++R+L+QLPG QDP+RLRQLLG+TAKMSFH V PNN G+ ++D +G Sbjct: 180 IQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMVAPNNQPGP---GITMMQDEEGRS 236 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 Y V D+VEISG L+ A +FDP TH+PVV FD GA RF ++TR N+G P A+VLD Sbjct: 237 YAVLDRVEISGDRLSDARVSFDPNTHEPVVSFRFDSAGATRFADITRQNVGNPFAIVLDD 296 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +VL+AP I + I G QISGNF+ ++A LAAMLRAG+LP KL ++EER VGADLG+D+ Sbjct: 297 KVLSAPNIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G + + G VL+ F+ VLYG WG++A+ ++ ++ ILT + L+L+GATLTLP IAG+ Sbjct: 357 IKMGIYSGIVGFVLVAAFIFVLYGTWGILANVALLIHTILTFSALTLVGATLTLPGIAGV 416 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VLGIGLAVD+N+L+NERIREE RK +S F ++D GF RAYSTI D N+TALIA +LF+F Sbjct: 417 VLGIGLAVDANVLINERIREETRKGRSAFAAIDTGFRRAYSTIIDGNMTALIAAAILFWF 476 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G G VRGFA+TM L ++ISMFT+++ VR MI I R KMK + I PL F P I Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRSKMKVLHIRPLIPFS--PYDKHI 534 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 QFM+ARF+GV +S L SI S+ L GLNYG+DF+GGIQ+ V DL+ R L+S Sbjct: 535 QFMKARFFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMSVKTQGTADLAKFREGLDS 594 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 L +G+I+ Q+F G + LVR Q Q G AQT + +K ++ +I P +T++ T+++GPK Sbjct: 595 LGLGEITLQSFGGNNSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPK 654 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 +S EL GI+ V+I++ AMLIYIW RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL Sbjct: 655 VSGELASAGILSVVIASFAMLIYIWARFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY S+ R++IDKSINETL RS+YT+ AF Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++A+ Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAK 825 >gi|190890332|ref|YP_001976874.1| protein-export translocase [Rhizobium etli CIAT 652] gi|190695611|gb|ACE89696.1| protein-export translocase protein [Rhizobium etli CIAT 652] Length = 848 Score = 482 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 450/832 (54%), Positives = 604/832 (72%), Gaps = 7/832 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MRN+PWLV YS+I IGLLIALPN LPQS L R PS +P ++SLGLDLRGGSHLVLEV Sbjct: 1 MRNSPWLVFTYSVIIIIGLLIALPNALPQSTLQRLPSWLPHEQVSLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 DE D LQ + R L+++GI ++ + QN+I ++ AD+ + + Sbjct: 61 DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADAAQSDAAVTDLKTLAN 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +++ L+ + +L VT I+I S I + +A++QS+E+IRQR+DQ+G+SE T Sbjct: 121 PISTGLSAG-QADLAVTANGATITIGFSPAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQR+G++R+L+QLPG QDP+RLRQLLG+TAKMSFH V PNN G+ ++D +G Sbjct: 180 IQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMVAPNNQPGP---GITMMQDEEGRS 236 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 Y V D+VEISG L+ A +FDP TH+PVV FD GA RF ++TR N+G P A+VLD Sbjct: 237 YAVLDRVEISGDRLSDARVSFDPNTHEPVVSFRFDSAGATRFADITRQNVGNPFAIVLDD 296 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +VL+AP I + I G QISGNF+ ++A LAAMLRAG+LP KL ++EER VGADLG+D+ Sbjct: 297 KVLSAPNIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G + + G VL+ F+ VLYG WG++A+ ++ ++ ILT + L+L+GATLTLP IAG+ Sbjct: 357 IKMGIYSGIVGFVLVAAFIFVLYGTWGILANVALLIHTILTFSALTLVGATLTLPGIAGV 416 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VLGIGLAVD+N+L+NERIREE RK +S F ++D GF RAYSTI D N+TALIA +LF+F Sbjct: 417 VLGIGLAVDANVLINERIREETRKGRSAFAAIDTGFRRAYSTIIDGNMTALIAAAILFWF 476 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G G VRGFA+TM L ++ISMFT+++ VR MI I R KMK + I PL F P I Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRSKMKVLHIRPLIPFS--PYDKHI 534 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 QFM+ARF+GV +S L SI SI L GLNYG+DF+GGIQ+ V DL+ R L+S Sbjct: 535 QFMKARFFGVTVSALLSIASIVLFIHPGLNYGVDFRGGIQMSVKTQGTADLAKFREGLDS 594 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 L +G+I+ Q+F G + LVR Q Q G AQT + +K ++ +I P +T++ T+++GPK Sbjct: 595 LGLGEITLQSFGGNNSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPK 654 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 +S EL GI+ V+I++ AMLIYIW RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL Sbjct: 655 VSGELASAGILSVVIASFAMLIYIWARFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY S+ R++IDKSINETL RS+YT+ AF Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++A+ Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAK 825 >gi|153009190|ref|YP_001370405.1| bifunctional preprotein translocase subunit SecD/SecF [Ochrobactrum anthropi ATCC 49188] gi|151561078|gb|ABS14576.1| protein-export membrane protein SecD [Ochrobactrum anthropi ATCC 49188] Length = 844 Score = 481 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 405/833 (48%), Positives = 577/833 (69%), Gaps = 5/833 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V+LYS+I IG++IALPNF Q L+ PS PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVVLYSLIVAIGVIIALPNFFTQKQLEAMPSWFPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ E I S+R + + + ++ D+ + + + Sbjct: 61 DAASLKKDRLRSLLDDARSKLRAERIQPQSIRAVGDAVVVTIPDADQRSKAETALRTLIS 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 VN+ ++ V + + ++ + L++ + + A++QS+EIIRQR+DQ+G++E + Sbjct: 121 QVNTSGFGTAINDIDVASNDNQVRLTLTEAGFNYRLDAALQQSLEIIRQRVDQVGVAEPS 180 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238 IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D Sbjct: 181 IQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDAPPPGVTIMPDSKDPN 240 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 +Y +ED++ +SG L A A FD +T++P+V FD +GAR+F ++T N+ +P A+VL Sbjct: 241 IKYPIEDQIALSGERLTDARAGFDQRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIVL 300 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 DG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 DGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLGG 360 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 D+I G + G VL+ +F+ +LYG WG +A+ ++ L+ +LT + LSL+GATLTLP IA Sbjct: 361 DAIKMGLITGIVGFVLVAVFIQLLYGVWGTIANVALLLHTLLTFSALSLIGATLTLPGIA 420 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GI+LGIG+AVD+NIL+NERIREE R+ +LD GF A+STI D+N+T+LI+T++LF Sbjct: 421 GIILGIGIAVDANILINERIREETRRGLGAMAALDKGFHSAFSTIVDANVTSLISTLLLF 480 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 FG G VRGFAITM L I ISMFT +++VR +M + +R +K+K + +P+ Sbjct: 481 TFGTGPVRGFAITMMLGIAISMFTDVTLVRMVMAWYVRKRKLKVL--VIEPFLKFVPEKT 538 Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 I FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ ++ ++P DL+ +R+ L Sbjct: 539 NISFMNARFIGIGVSIVLSILSIGLFFKPGLNYGIDFKGGIQAEIVTSQPADLAQLRAKL 598 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 +L +G+++ Q+ + L+R+Q Q G AQT + +++ +TE+ P I+ TE+VG Sbjct: 599 GALGLGEVALQSAGSPNDVLIRVQRQEGGEEAQTVAVNKMREAVTELDPGVKIERTEVVG 658 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 PK+S EL R G + VI+SA+ MLIY+W RF+W+FA+GAI TLILD TK +GFFALF ++F Sbjct: 659 PKVSGELARSGFIAVILSALGMLIYLWWRFEWFFAMGAIITLILDTTKMVGFFALFQLDF 718 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 NLTA+AA+LT IGYSVNDKVVVYDRMR+NM+LY S R+++D SIN+ L R VYTSM Sbjct: 719 NLTAIAALLTAIGYSVNDKVVVYDRMRENMRLY-KSKPLREIVDMSINQVLVRCVYTSMT 777 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ +LPMA+WGGS + +FA+PM FGI +A SSSIFIAAPILL + +W Sbjct: 778 TFLCMLPMAIWGGSAVHNFAVPMLFGIFIATSSSIFIAAPILLLLGNWWQHRK 830 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 79/176 (44%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ I+ + + ++I + + + A L+L T +L G Sbjct: 355 GPDLGGDAIKMGLITGIVGFVLVAVFIQLLYGV-WGTIANVALLLHTLLTFSALSLIGAT 413 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 414 LTLPGIAGIILGIGIAVDANILINERIREETR---RGLGAMAALDKGFHSAFSTIVDANV 470 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + IS L + +G + FAI M GI + S+F ++ + W + ++ Sbjct: 471 TSLISTLLLFTFGTGPVRGFAITMMLGIAI----SMFTDVTLVRMVMAWYVRKRKL 522 >gi|260459799|ref|ZP_05808053.1| protein-export membrane protein SecD [Mesorhizobium opportunistum WSM2075] gi|259034601|gb|EEW35858.1| protein-export membrane protein SecD [Mesorhizobium opportunistum WSM2075] Length = 849 Score = 481 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 320/833 (38%), Positives = 506/833 (60%), Gaps = 17/833 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + + +IL + I +++A PN P S L + PS +PK +++LGLDL+GGSH++LE++++ Sbjct: 5 SRFKMILIWVAVAITVILAAPNLFPASTLAQLPSWVPKRQMTLGLDLQGGSHILLEMNQN 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 D + L+ DE+R+ L+ IG + + + D + + V Sbjct: 65 DLIKDRLETTRDEIRTLLRDAKIGYTGLAGNGRTLQVRITDPAQLDAAKKALKTLTDPVA 124 Query: 124 SKLNVDPKKNLLV--TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L + + + ++ I S A+ QS+E++ +R++++G +E + Sbjct: 125 AGLFTGGSIQEMSLDESEPGLLKFTVTDAGIKYRTSTALAQSIEVVERRVNELGTTEPIV 184 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234 QR G RIL+Q+PG QDP RL+++LG TAK++F V + + + G + Sbjct: 185 QRQGDDRILVQVPGLQDPQRLKEILGQTAKLTFQMVDQSMPVQDALKGRPPAGSSVLYSQ 244 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 D YL+E++V +SG +L A A ++ + ++PVV FD GA RF + T N+GK Sbjct: 245 DDPPVPYLIENRVIVSGENLVDAQATYNSQNNEPVVSFRFDSKGAARFGQATAQNVGKLF 304 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A++LD +V++AP I + I G QISGNFT ++A LA +LRAG+LP L ++EER VG Sbjct: 305 AIILDNQVISAPQIREPILGGTGQISGNFTAQSANDLAVLLRAGALPATLTVIEERTVGP 364 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG DSI+ G A + G +L+V FM V YG G +A+ ++ ++V + + +LSLLGATLTL Sbjct: 365 GLGQDSIHAGKVAGIIGSILVVAFMFVAYGFLGFLANIALAVHVAMIVGVLSLLGATLTL 424 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL IG+AVDSN+L+ ERIREE R +SV ++D GF++A +TI DSN+T+LIAT Sbjct: 425 PGIAGIVLTIGMAVDSNVLIYERIREERRAGRSVIQAIDTGFTKALATIVDSNVTSLIAT 484 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 VVLF+ G G V+GFAIT + IL ++FTA + R ++ +R + K + P++ + Sbjct: 485 VVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPKELPKAPVT---FV 541 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSV 593 P I FM R W +S SI S+ L + G+NYGIDFKGG + V + DL+ Sbjct: 542 PPGTKIPFMGIRRWTFALSSTLSILSVVLFMSVGINYGIDFKGGSLIEVQSKSGNADLAD 601 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 +R L L IG++ Q F + L+R+ Q A+ V++ V+ ++ + + Sbjct: 602 IRGRLTELNIGEVQVQQFGAPNDVLIRVGTQDAGENAEQTVIDKVRGELQDQYDF---RR 658 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 E+VGP +S EL ++G + +I++ + +L+Y+W RF+W FA+GAI + D+ TLGFF + Sbjct: 659 VEVVGPTVSGELAKQGTIAMIVALVGILVYVWFRFEWQFAVGAIVATVHDVVMTLGFFVI 718 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G+EFN +++AA+LT+IGYS+ND +VVYDR+R++++ Y + L++ +INETL R+ Sbjct: 719 TGLEFNQSSLAAILTIIGYSLNDTIVVYDRVREDLRKY-KRMPLPQLLNNAINETLSRTT 777 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TS+ +++L + ++GG VI SF + M FG+V SSIFIAAP+L+ Sbjct: 778 LTSVTTSLALLALVLFGGEVIRSFTLAMLFGVVFGTYSSIFIAAPLLILFKLR 830 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + ++ I G V II +I ++ ++++ + + A L + + +G +L G Sbjct: 361 TVGPGLGQDSIHAGKVAGIIGSILVVAFMFVAYGF-LGFLANIALAVHVAMIVGVLSLLG 419 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++Y+R+R+ + S ID + L V + Sbjct: 420 ATLTLPGIAGIVLTIGMAVDSNVLIYERIREERRA---GRSVIQAIDTGFTKALATIVDS 476 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ + I+ + + G + FAI A GI+ ++ ++ Sbjct: 477 NVTSLIATVVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPK 531 >gi|161619271|ref|YP_001593158.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella canis ATCC 23365] gi|254704593|ref|ZP_05166421.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella suis bv. 3 str. 686] gi|260566159|ref|ZP_05836629.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261755282|ref|ZP_05998991.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella suis bv. 3 str. 686] gi|161336082|gb|ABX62387.1| protein-export membrane protein SecD [Brucella canis ATCC 23365] gi|260155677|gb|EEW90757.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261745035|gb|EEY32961.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella suis bv. 3 str. 686] Length = 845 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 407/834 (48%), Positives = 577/834 (69%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+R + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGSEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|163843584|ref|YP_001627988.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella suis ATCC 23445] gi|163674307|gb|ABY38418.1| protein-export membrane protein SecD [Brucella suis ATCC 23445] Length = 845 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 407/834 (48%), Positives = 577/834 (69%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+R + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPTPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|23502196|ref|NP_698323.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella suis 1330] gi|225627789|ref|ZP_03785826.1| protein-export membrane protein SecD [Brucella ceti str. Cudo] gi|254702056|ref|ZP_05163884.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella suis bv. 5 str. 513] gi|254708013|ref|ZP_05169841.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella pinnipedialis M163/99/10] gi|254710383|ref|ZP_05172194.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella pinnipedialis B2/94] gi|254714377|ref|ZP_05176188.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti M644/93/1] gi|254717275|ref|ZP_05179086.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti M13/05/1] gi|256031877|ref|ZP_05445491.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella pinnipedialis M292/94/1] gi|256160073|ref|ZP_05457767.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti M490/95/1] gi|256255277|ref|ZP_05460813.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti B1/94] gi|256369744|ref|YP_003107254.1| protein-export membrane protein, SecD/SecF family [Brucella microti CCM 4915] gi|260169012|ref|ZP_05755823.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella sp. F5/99] gi|261219097|ref|ZP_05933378.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti M13/05/1] gi|261222474|ref|ZP_05936755.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti B1/94] gi|261315509|ref|ZP_05954706.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella pinnipedialis M163/99/10] gi|261317947|ref|ZP_05957144.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella pinnipedialis B2/94] gi|261322157|ref|ZP_05961354.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti M644/93/1] gi|261752623|ref|ZP_05996332.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella suis bv. 5 str. 513] gi|261758505|ref|ZP_06002214.1| export membrane protein [Brucella sp. F5/99] gi|265988977|ref|ZP_06101534.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella pinnipedialis M292/94/1] gi|265998441|ref|ZP_06110998.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti M490/95/1] gi|294852659|ref|ZP_06793332.1| secD [Brucella sp. NVSL 07-0026] gi|23348164|gb|AAN30238.1| protein-export membrane protein, SecD/SecF family [Brucella suis 1330] gi|225617794|gb|EEH14839.1| protein-export membrane protein SecD [Brucella ceti str. Cudo] gi|255999906|gb|ACU48305.1| protein-export membrane protein, SecD/SecF family [Brucella microti CCM 4915] gi|260921058|gb|EEX87711.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti B1/94] gi|260924186|gb|EEX90754.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti M13/05/1] gi|261294847|gb|EEX98343.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti M644/93/1] gi|261297170|gb|EEY00667.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella pinnipedialis B2/94] gi|261304535|gb|EEY08032.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella pinnipedialis M163/99/10] gi|261738489|gb|EEY26485.1| export membrane protein [Brucella sp. F5/99] gi|261742376|gb|EEY30302.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella suis bv. 5 str. 513] gi|262553065|gb|EEZ08899.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ceti M490/95/1] gi|264661174|gb|EEZ31435.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella pinnipedialis M292/94/1] gi|294821248|gb|EFG38247.1| secD [Brucella sp. NVSL 07-0026] Length = 845 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 407/834 (48%), Positives = 577/834 (69%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+R + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|62290226|ref|YP_222019.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 1 str. 9-941] gi|82700147|ref|YP_414721.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis biovar Abortus 2308] gi|189024460|ref|YP_001935228.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus S19] gi|237815734|ref|ZP_04594731.1| protein-export membrane protein SecD [Brucella abortus str. 2308 A] gi|254689532|ref|ZP_05152786.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 6 str. 870] gi|254697671|ref|ZP_05159499.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 2 str. 86/8/59] gi|254730561|ref|ZP_05189139.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 4 str. 292] gi|256257780|ref|ZP_05463316.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 9 str. C68] gi|260546771|ref|ZP_05822510.1| protein-export membrane protein [Brucella abortus NCTC 8038] gi|260755055|ref|ZP_05867403.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 6 str. 870] gi|260758271|ref|ZP_05870619.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 4 str. 292] gi|260762098|ref|ZP_05874441.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 2 str. 86/8/59] gi|260884067|ref|ZP_05895681.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 9 str. C68] gi|297248617|ref|ZP_06932335.1| SecD/SecF family protein-export membrane protein [Brucella abortus bv. 5 str. B3196] gi|62196358|gb|AAX74658.1| protein-export membrane protein, SecD/SecF family [Brucella abortus bv. 1 str. 9-941] gi|82616248|emb|CAJ11300.1| Acriflavin resistance protein:SecD/SecF/SecDF export membrane protein:SecF protein:SecD export membrane protein [Brucella melitensis biovar Abortus 2308] gi|189020032|gb|ACD72754.1| protein-export membrane protein, SecD/SecF family [Brucella abortus S19] gi|237789032|gb|EEP63243.1| protein-export membrane protein SecD [Brucella abortus str. 2308 A] gi|260095821|gb|EEW79698.1| protein-export membrane protein [Brucella abortus NCTC 8038] gi|260668589|gb|EEX55529.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 4 str. 292] gi|260672530|gb|EEX59351.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 2 str. 86/8/59] gi|260675163|gb|EEX61984.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 6 str. 870] gi|260873595|gb|EEX80664.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 9 str. C68] gi|297175786|gb|EFH35133.1| SecD/SecF family protein-export membrane protein [Brucella abortus bv. 5 str. B3196] Length = 845 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 406/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+R + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYHLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+ ML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVVMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|17986963|ref|NP_539597.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis bv. 1 str. 16M] gi|256044963|ref|ZP_05447866.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis bv. 1 str. Rev.1] gi|260565437|ref|ZP_05835921.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265991390|ref|ZP_06103947.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis bv. 1 str. Rev.1] gi|17982610|gb|AAL51861.1| protein translocase subunit secd / protein translocase subunit secf [Brucella melitensis bv. 1 str. 16M] gi|260151505|gb|EEW86599.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|263002174|gb|EEZ14749.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis bv. 1 str. Rev.1] Length = 845 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 406/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+R + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAINKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+ ML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVVMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|225852812|ref|YP_002733045.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis ATCC 23457] gi|256263701|ref|ZP_05466233.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis bv. 2 str. 63/9] gi|225641177|gb|ACO01091.1| protein-export membrane protein SecD [Brucella melitensis ATCC 23457] gi|263093758|gb|EEZ17763.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis bv. 2 str. 63/9] gi|326409348|gb|ADZ66413.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis M28] gi|326539058|gb|ADZ87273.1| protein-export membrane protein SecD [Brucella melitensis M5-90] Length = 845 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 407/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+R + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ IL+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVILSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+ ML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVVMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|306843333|ref|ZP_07475939.1| protein-export membrane protein SecD [Brucella sp. BO2] gi|306844224|ref|ZP_07476817.1| protein-export membrane protein SecD [Brucella sp. BO1] gi|306275499|gb|EFM57236.1| protein-export membrane protein SecD [Brucella sp. BO1] gi|306286478|gb|EFM58069.1| protein-export membrane protein SecD [Brucella sp. BO2] Length = 845 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 407/834 (48%), Positives = 577/834 (69%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+R + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEY 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAKLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|209547898|ref|YP_002279815.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533654|gb|ACI53589.1| protein-export membrane protein SecD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 849 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 438/833 (52%), Positives = 608/833 (72%), Gaps = 7/833 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR +PWLV Y++I +GLLIALPN LPQS+L R P+ +P ++SLGLDLRGGSHLVLEV Sbjct: 1 MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 DE D LQ + R L+++GI ++ + QN+I ++ AD+ + + Sbjct: 61 DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLAN 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +++ L+ ++ I+I S+ I + +A++QS+E+IRQR+DQ+G+SE T Sbjct: 121 PISTGLSAGQSDLDVL-ANGATITIGFSKAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQR+G++R+L+QLPG QDP+RLRQLLG+TAKMSFH + PNN GV L+D +G Sbjct: 180 IQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGP---GVTMLKDDEGRT 236 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 Y V D+VE+SG L+ A +FDP TH+P+V FD GA RF ++TR N+G P A+VLD Sbjct: 237 YPVLDRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDD 296 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +VL+APVI + I G QISGNF+ ++A LAAMLRAG+LP KL ++EER VGADLG+D+ Sbjct: 297 KVLSAPVIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G + + G +L+ +F+ VLYG WG++A+ ++ ++ ILT + L+L+GATLTLP IAG+ Sbjct: 357 IKMGIYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSALTLVGATLTLPGIAGV 416 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VLGIGLAVD+N+L+NERIREE RK + F ++D GF+RAYSTI D N+TALIA +LFFF Sbjct: 417 VLGIGLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFF 476 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G G VRGFA+TM L ++ISMFT+++ VR MI I R +K K ++I PL F P I Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFS--PYDKHI 534 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 +FM+ARF+GV +S L SI S+ L GLNYG+DF+GGIQ+ V DL+ R L+S Sbjct: 535 EFMKARFFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDS 594 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 L +G+I+ Q+F + + LVR Q Q G AQT + +K ++ +I P +T++ T+++GPK Sbjct: 595 LGLGEITLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPK 654 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 +S EL GI+ V+I+++AMLIYIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL Sbjct: 655 VSGELAWAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY S+ R++IDKSINETL RS+YT+ AF Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++A++ Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAKV 826 >gi|163759440|ref|ZP_02166525.1| probable protein-export membrane protein [Hoeflea phototrophica DFL-43] gi|162283037|gb|EDQ33323.1| probable protein-export membrane protein [Hoeflea phototrophica DFL-43] Length = 854 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 331/833 (39%), Positives = 505/833 (60%), Gaps = 17/833 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + G++ A PN L + P +P +++LGLDL+GGS+++L+V+ Sbjct: 5 SRWKTTLIWLAVLAGVVFAAPNLLDRQQAANLPEWLPSKQLTLGLDLQGGSYMLLQVERQ 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 D + L D++R L++ GIG + + + D E + + + V Sbjct: 65 DIIKDRLTTTVDDVRRLLREAGIGYTGLSGTGQIVQVRIRDESQIEEARNILAELTEPVA 124 Query: 124 SKLNVDPK--KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S L + + T ++ IVL+ + I +S A+ QS+E++R+RID++G +E I Sbjct: 125 SGLLGGGSIVEATIEETQSGQLRIVLTDDGITYRVSSAVAQSIEVVRKRIDELGTTEPVI 184 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------- 234 QR G+ RIL+Q+PG DP RL+ LL TAK++F V + + M G Sbjct: 185 QRQGADRILVQVPGLDDPERLKSLLNQTAKLAFRMVDTSMPVQEAMDGRPPATSEVLFST 244 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 D YL++ V +SG +L A A +D +T++P+V FD G +RF + T +G P Sbjct: 245 DDPPIPYLIQRSVLVSGENLVDAQAGYDQRTNEPIVSFRFDSKGGQRFGQATTQFVGLPF 304 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A+VLD +V++APVI + I G QISGNFT+E+A LA +LRAG+LP L ++EER VG Sbjct: 305 AIVLDEQVISAPVIREPILGGSGQISGNFTVESANDLAILLRAGALPATLTVIEERTVGP 364 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG+DSI G A + G VL++ FM V YG G +A+ ++ NV + +ALL++LGATLTL Sbjct: 365 GLGADSIAAGEIAGLIGAVLVLAFMFVAYGMLGFIANLALIANVSMIIALLTMLGATLTL 424 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL +G+AVDSN+L+ ERIREE+R +S+ ++D GFSRA+STI D+N+T LIA Sbjct: 425 PGIAGIVLTVGMAVDSNVLIYERIREEHRSGRSLIQAIDAGFSRAFSTILDANVTTLIAA 484 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 ++LF+ G G VRGFAIT+ + I+ ++FTA + R M+ +R K+ K++ + Sbjct: 485 IILFYLGTGPVRGFAITLAIGIVTTVFTAFTFTRWMVAEWVRRKRPKTMPKGM---LDRV 541 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSV 593 +FM R + +S + S+ ++ L T +NYGIDFKGG + V A + D+ Sbjct: 542 IRDFTFRFMTFRRFTFVLSAVASVTAMVLFATVNMNYGIDFKGGSMIEVQAKDGNADVGD 601 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 +R+ L L +GDI Q F ++ L+R+Q Q G A+ V+ +V+ ++ I+ Sbjct: 602 IRARLSELNLGDIQAQEFGTPRDVLIRVQAQGGGENAEQTVITLVRAELE---GDYDIRR 658 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 E+VGP +S EL + G + VI S +A+L+YIW RF+W FALGAI + D+ T+G F + Sbjct: 659 VEVVGPTVSGELAQAGTIAVIASLMAILVYIWFRFEWQFALGAIIATVHDVVLTIGIFVI 718 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 GIEFNL+++AAVLT++GYS+ND VVVYDR+R+N++ Y + L+D SIN+ L R++ Sbjct: 719 SGIEFNLSSIAAVLTIVGYSLNDTVVVYDRVRENLRRY-KKLPLTQLLDLSINQMLPRTI 777 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TS+ +++L + ++GG VI SF M FG++V SSIFIAAP+L+ Sbjct: 778 LTSVTTLLALLALFIFGGEVIQSFTFAMIFGVLVGTYSSIFIAAPVLILFKLR 830 Score = 124 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 74/173 (42%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I G + +I A+ +L ++++ + A LI +++ + + G Sbjct: 363 GPGLGADSIAAGEIAGLIGAVLVLAFMFVAYGML-GFIANLALIANVSMIIALLTMLGAT 421 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ + + S ID + + ++ Sbjct: 422 LTLPGIAGIVLTVGMAVDSNVLIYERIREE---HRSGRSLIQAIDAGFSRAFSTILDANV 478 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 I+ + + G + FAI +A GIV ++ ++ + Sbjct: 479 TTLIAAIILFYLGTGPVRGFAITLAIGIVTTVFTAFTFTRWMVAEWVRRKRPK 531 >gi|254694018|ref|ZP_05155846.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 3 str. Tulya] gi|261214312|ref|ZP_05928593.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 3 str. Tulya] gi|260915919|gb|EEX82780.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 3 str. Tulya] Length = 845 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 406/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+R + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYHLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRIIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+ ML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVVMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 104 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 79/176 (44%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIA----ISMFTDVTLVRIIMAWFVRRRKL 523 >gi|110634147|ref|YP_674355.1| bifunctional preprotein translocase subunit SecD/SecF [Mesorhizobium sp. BNC1] gi|110285131|gb|ABG63190.1| protein translocase subunit secD [Chelativorans sp. BNC1] Length = 856 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 333/836 (39%), Positives = 495/836 (59%), Gaps = 16/836 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W ++ +GL A PN LPQS L PS P ++LGLDL+GGSH++L++ Sbjct: 2 LHFSRWQTFFIWLVVALGLAYAAPNVLPQSWLSSLPSWAPTRPMTLGLDLQGGSHILLQI 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + D +N L DE+R L+ IG + + + D+ E + LQ Sbjct: 62 NRDQLINERLTSTRDEVRRVLRDSRIGYTGLSSSGRFVQVRIRDAGEIEAAKQALGELLQ 121 Query: 121 GVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 V L ++ + + + L+ + I +S A+ QS+E++ +R++++G +E Sbjct: 122 PVTGGLLGTSSIQELEMAEPEPGLLRLTLTDDGIQYRLSAALTQSIEVVSRRVNELGTTE 181 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF------ 232 IQR G RIL+Q+PG QDP RL+ +LGTTAK++F V + + + G Sbjct: 182 PVIQRQGDDRILVQVPGLQDPQRLKDILGTTAKLTFQMVDQSVPVQEAIQGRPPAGTTVM 241 Query: 233 -LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 RD+ +L+ED+V +SG +L A +FD T++PVV FD GA RF + T++N+G Sbjct: 242 YTRDNPPVPFLIEDRVIVSGENLVDAQTSFDQLTNEPVVTFRFDTRGATRFGQATQENVG 301 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + A+VLDG V++AP I + I G QI+G+FT+++A LA +LRAG+LP L IVEER Sbjct: 302 RLFAIVLDGHVISAPQIREPILGGTGQIAGSFTVQSANDLAVLLRAGALPADLTIVEERT 361 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG LG DSI G A + G +L+V+FM YG GL+A+ ++ N+ L +A+LS+LGAT Sbjct: 362 VGPGLGQDSIDAGKMAAIIGSILVVVFMFAAYGFLGLIANVALVANIALIVAVLSVLGAT 421 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGIVL IG+AVDSN+L+ ERIREE R ++V + D GF +A +TI DSNIT L Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRTVIQAFDSGFRKALATIIDSNITTL 481 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 IA VVLFF G G VRGFA+T+ + I+ ++FTA ++ R ++ +R + K + + Sbjct: 482 IAAVVLFFLGSGPVRGFAVTLAIGIVTTVFTAFTLTRWLVAVWLRRSRPKELPRGYIR-- 539 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590 L+P+ I FM+ R S + I S+ LLF N+GIDF GG + V A D Sbjct: 540 -LVPEVTRIPFMKVRLQAFAFSFMLCIASVALLFIVKPNFGIDFTGGTLIEVRAKSGEAD 598 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 +S +R L + IGD Q F E + L+R+ P +L V+ + Sbjct: 599 ISDIRQRLSAAGIGDAQVQGFGTETDALIRIGAAPDSGEESGNIL--VRNAQQAVSSDYD 656 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I+ TE+VGP +S EL ++GV+ + +LIY+WIRF+W FALGAI DI TLGF Sbjct: 657 IRRTEVVGPTVSGELAWAAVIGVLAAMAGILIYVWIRFEWQFALGAIIATANDIILTLGF 716 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 + ++F+L+ VAA+LT++GYS+ND VV+YDR+R+N++ + + L+D S NE L Sbjct: 717 ITITQLQFDLSTVAAILTIVGYSLNDTVVIYDRVRENLRRF-KKMPLGQLLDLSDNEMLS 775 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 R+ TS+ F+++L + ++GG VI SF M FG+ + SSIF+AAPIL+F Sbjct: 776 RTAMTSVTTFLALLALFIFGGEVIRSFVASMLFGVFIGTFSSIFVAAPILIFFKLR 831 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 77/173 (44%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I G + II +I ++++++ + + L A L+ +I + ++ G Sbjct: 363 GPGLGQDSIDAGKMAAIIGSILVVVFMFAAYGFL-GLIANVALVANIALIVAVLSVLGAT 421 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+R+R+ + + D + L + +++ Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREERRA---GRTVIQAFDSGFRKALATIIDSNI 478 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 I+ + + G + FA+ +A GIV ++ + ++ Sbjct: 479 TTLIAAVVLFFLGSGPVRGFAVTLAIGIVTTVFTAFTLTRWLVAVWLRRSRPK 531 >gi|256113876|ref|ZP_05454669.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis bv. 3 str. Ether] gi|265995226|ref|ZP_06107783.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis bv. 3 str. Ether] gi|262766339|gb|EEZ12128.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis bv. 3 str. Ether] Length = 845 Score = 478 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 408/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+R + N + L+ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGNAVVLTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+ ML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVVMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|306839142|ref|ZP_07471959.1| protein-export membrane protein SecD [Brucella sp. NF 2653] gi|306405689|gb|EFM61951.1| protein-export membrane protein SecD [Brucella sp. NF 2653] Length = 845 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 406/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+ + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIHVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKIGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKIGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|254719368|ref|ZP_05181179.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella sp. 83/13] gi|265984369|ref|ZP_06097104.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella sp. 83/13] gi|264662961|gb|EEZ33222.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella sp. 83/13] Length = 845 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 406/834 (48%), Positives = 575/834 (68%), Gaps = 6/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+ + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIHVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKIGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMLLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + + + A L+L T +L G Sbjct: 356 GPDLGGDAIKIGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|116250452|ref|YP_766290.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium leguminosarum bv. viciae 3841] gi|115255100|emb|CAK06174.1| putative transmembrane export SecD/F family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 853 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 440/826 (53%), Positives = 603/826 (73%), Gaps = 7/826 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + WLV Y++I +GLLIALPN LPQS+L R P+ +P ++SLGLDLRGGSHLVLEV Sbjct: 1 MRTSRWLVATYTVIIVLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 DE D LQ + R L+++GI ++ + QN+I ++ AD+ + ++ Sbjct: 61 DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADAAQSDAAVTELKTLAN 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +++ L+ + +L VT I++ S+ I + +A++QS+E+IRQR+DQ+G+SE T Sbjct: 121 PISTGLSAG-QADLDVTANGATITVGFSRAGIAANVDNAVQQSLEVIRQRVDQVGVSEPT 179 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQR+G++R+L+QLPG QDPSRLR+LLG+TAKMSFH + PNN GV L+D +G Sbjct: 180 IQRIGANRVLVQLPGAQDPSRLRELLGSTAKMSFHMLSPNN---APGPGVTMLKDDEGRS 236 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 Y V D+VEISG L+ A +FDP T +P+V FD GA RF E+TR N+G P A+VLD Sbjct: 237 YPVLDRVEISGDRLSDARVSFDPNTREPIVSFRFDSAGATRFAEITRQNVGNPFAIVLDD 296 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +VL+APVI + I G QISG+F+ ++A LAAMLRAG+LP KL ++EER VGADLG+D+ Sbjct: 297 KVLSAPVIREPITGGSGQISGSFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G + + G VL+ F+ VLYG WG +A+ ++ ++ ILT + L+L+GATLTLP IAG+ Sbjct: 357 IRMGIYSGIVGFVLVAAFIFVLYGTWGFLANIALLIHTILTFSALTLVGATLTLPGIAGV 416 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VLGIGLAVD+N+L+NERIREE RK +S F ++D GF RAYSTI D N+TALIA +LFFF Sbjct: 417 VLGIGLAVDANVLINERIREETRKGKSAFAAIDTGFRRAYSTIIDGNMTALIAAAILFFF 476 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G G VRGFA+TM L ++ISMFT+++ VR MI I R +K+K ++I PL F P I Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKLKVLNIRPLIPFS--PYDKHI 534 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 +FM+ARF+GV +S L SI S+ L GLNYG+DF+GGIQ+ V DL+ R L+S Sbjct: 535 EFMKARFFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMAVKTQGAADLAKFREGLDS 594 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 L +G+I+ Q+F + + LVR Q Q G AQT + +K ++T+I P +T++ T+++GPK Sbjct: 595 LGLGEITLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVTKIDPTATVEGTDVIGPK 654 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 +S EL GI+ V+I++ AMLIYIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL Sbjct: 655 VSGELAWAGILSVVIASFAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY S+ R++IDKSINETL RS+YT+ AF Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DW Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDW 819 >gi|241203075|ref|YP_002974171.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856965|gb|ACS54632.1| protein-export membrane protein SecD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 848 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 447/832 (53%), Positives = 608/832 (73%), Gaps = 7/832 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + WLVI YS+I +GLLIALPN LPQS+L R P+ +P ++SLGLDLRGGSHLVLEV Sbjct: 1 MRTSRWLVITYSVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 DE D LQ + R L+++GI ++ + QN+I ++ AD+ + ++ Sbjct: 61 DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADAAQSDAAVTELKTLAN 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +++ L+ + +L VT I++ S I + +A++QS+E+IRQR+DQ+G+SE T Sbjct: 121 PISTGLSAG-QADLAVTANGATITVGFSPAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQR+G++R+L+QLPG QDPSRLR+LLG+TAKMSFH + PNN GV L+D +G Sbjct: 180 IQRIGANRVLVQLPGAQDPSRLRELLGSTAKMSFHMLSPNN---APGPGVTMLKDDEGRS 236 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + V D+VEISG L+ A +FDP TH+P+V FD GA RF E+TR N+G P A+VLD Sbjct: 237 FPVLDRVEISGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFAEITRQNVGNPFAIVLDD 296 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +VL+APVI + I G QISG+F+ ++A LAAMLRAG+LP KL ++EER VGADLG+D+ Sbjct: 297 KVLSAPVIREPITGGSGQISGSFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G + + G VL+ +F+ VLYG WG +A+ ++ ++ ILT + L+L+GATLTLP IAG+ Sbjct: 357 IKMGIYSGIVGFVLVAVFIFVLYGTWGFLANIALLIHTILTFSALTLVGATLTLPGIAGV 416 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VLGIGLAVD+N+L+NERIREE RK +S F ++D GF RAYSTI D N+TALIA +LFFF Sbjct: 417 VLGIGLAVDANVLINERIREETRKGKSAFAAIDTGFRRAYSTIIDGNMTALIAAAILFFF 476 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G G VRGFA+TM L ++ISMFT+++ VR MI I R K+K ++I PL F P I Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRSKLKVLNIRPLIPFS--PYDKHI 534 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 QFM+ARF+G+ +S L SI SI L GLNYG+DF+GGIQ+ V P DL R L + Sbjct: 535 QFMKARFFGITVSALLSIASIVLFIHPGLNYGVDFRGGIQMAVKTTGPADLGTFREGLNT 594 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 L +G+IS Q+F + + LVR Q Q G AQT + +K ++T+I P +TI+ T+++GPK Sbjct: 595 LGLGEISLQSFGDKNSILVRAQRQEGGEEAQTAAVTKLKAEVTKIDPTATIEGTDVIGPK 654 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 +S EL GI+ V+I++ AMLIYIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL Sbjct: 655 VSGELAWAGILSVVIASFAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY S+ R++IDKSINETL RS+YT+ AF Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++A+ Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAK 825 >gi|83595000|ref|YP_428752.1| bifunctional preprotein translocase subunit SecD/SecF [Rhodospirillum rubrum ATCC 11170] gi|83577914|gb|ABC24465.1| protein translocase subunit secD / protein translocase subunit secF [Rhodospirillum rubrum ATCC 11170] Length = 853 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 366/833 (43%), Positives = 529/833 (63%), Gaps = 15/833 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + I +C IGLL+ALPN P +P+NRI+LGLDL+GGSHL+L VD Sbjct: 5 SKAKTIAIIAVCLIGLLLALPNAF---KHGSLPDWLPQNRITLGLDLQGGSHLLLAVDMP 61 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 ++ L+ + +R+ L+K+ + + + + A + E L + Sbjct: 62 AVIHDRLETMLESVRTNLRKDSLRYTGLAVRDRSVVFTLASADDIETA----RGALAPLV 117 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + +T I L+ + + A +QS+EI+R+RID+ G++E I R Sbjct: 118 QPDEPGKPADYGLTFDGLTGRIALADSGVQAWADKAAQQSIEIVRRRIDETGVNEPMIAR 177 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV-----RFLRDSDG 238 G+ RIL+QLPG DP R+++LLG TAKM+FH V G + G Sbjct: 178 QGADRILVQLPGVSDPGRIKRLLGQTAKMTFHMVGDRALGDGSVPAGYRLLPSADPARPG 237 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 + LV KVE+ G HL A +FD + + VV SFD GARRF +VT+ +GKP A+VL Sbjct: 238 EKILVSRKVEVDGSHLTDAKPSFDQQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVL 297 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 D +V++APVI + I G+ QISG+FT +A LA +LRAG+LP L +VEER VG DLG+ Sbjct: 298 DDKVVSAPVIREPITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGA 357 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 DSI G AI G VL+V +M + YG +G A+ ++ N+ +TL LSL+ ATLTLP IA Sbjct: 358 DSIRAGMIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAITLGALSLMQATLTLPGIA 417 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 G++L +G+AVD+NIL+NERIREE +K + V S++ GF RA++TIFDSNIT LI +LF Sbjct: 418 GLLLSLGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILF 477 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G G +RGFA+T+ L I++SMFTAI++ R +M+ R K KS+ + F L+PD Sbjct: 478 SIGVGTIRGFAVTISLGIIVSMFTAITVTRLLMVIWFRRTKPKSLPMANH--FRLVPDHT 535 Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 I FMR R G+G S++ S+ S+ L F GLNYG+DF GG + V + VD +R++L Sbjct: 536 KIAFMRGRLLGLGGSVVLSVASVVLFFHPGLNYGVDFAGGTVMEVRSQNAVDFPALRTDL 595 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 +SL IG + Q F + L+RL+ Q G AQ V++ V+ + S I+ + VG Sbjct: 596 QSLPIGPVQLQAFGSPNDVLIRLERQEGGDAAQAEVVKQVQGMLERDYAGSEIRRVDSVG 655 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 +S EL + G++ + ++AIAMLIYIW RF+W F +GA+ T++LD+TKT+GFFA+ G++F Sbjct: 656 ASVSAELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVGFFAITGMQF 715 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 NLTA+AA+LT++GYS+NDKVVVYDR+R+N++LY T + R LIDKSINETLGR+V TS+A Sbjct: 716 NLTAIAAILTIMGYSINDKVVVYDRVRENLRLYRT-MPLRQLIDKSINETLGRTVGTSLA 774 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F++++P+AV+GG + FA+ + FG+V+A SSS+FIAAP+LL + + R + Sbjct: 775 TFLAIIPLAVFGGEALREFALVLLFGVVLATSSSVFIAAPLLLLLGEHRLRPG 827 >gi|239832214|ref|ZP_04680543.1| protein-export membrane protein SecD [Ochrobactrum intermedium LMG 3301] gi|239824481|gb|EEQ96049.1| protein-export membrane protein SecD [Ochrobactrum intermedium LMG 3301] Length = 844 Score = 474 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 403/833 (48%), Positives = 577/833 (69%), Gaps = 5/833 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS+I IG++IALPNF Q LD PS PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLIVVIGVIIALPNFFTQKHLDAMPSWFPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ E I S+R + + + ++ D+ + + + Sbjct: 61 DAAGLKKDRLRTLLDDARSKLRAERIQPQSIRAVGDAVVVTIPDADQRSKAETALRTLIS 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 VN+ ++ V +T+ ++ + L++ + + A++QS+EIIRQR+DQ+G++E + Sbjct: 121 QVNTSGFGTAINDIDVASTDNQVRLTLTEAGFNYRLDAALQQSLEIIRQRVDQVGVAEPS 180 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238 IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D Sbjct: 181 IQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKDPN 240 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 ++ +ED++ +SG L A A FD +T++P+V FD +GAR+F ++T N+ +P A+VL Sbjct: 241 IKFPIEDQIALSGERLTDARAGFDQRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIVL 300 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 DG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 DGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLGG 360 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 D+I G + G VL+ +F+ +LYG WG +A+ ++ L+ +LT + LSL+GATLTLP IA Sbjct: 361 DAIKMGLITGIVGFVLVAVFIQLLYGVWGTIANVALLLHTLLTFSALSLIGATLTLPGIA 420 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GI+LGIG+AVD+NIL+NERIREE R+ +LD GF A+STI D+N+T+LI+T++LF Sbjct: 421 GIILGIGIAVDANILINERIREETRRGLGAMAALDKGFHSAFSTIVDANVTSLISTLLLF 480 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 FG G VRGFAITM L I ISMFT +++VR +M + +R +K+K + +P+ Sbjct: 481 TFGTGPVRGFAITMMLGIAISMFTDVTLVRMVMAWYVRKRKLKVL--VIEPFLKFVPEKT 538 Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 I FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ ++ ++P DL+ +R L Sbjct: 539 NISFMNARFVGIGVSIVLSILSIGLFFKPGLNYGIDFKGGIQAEIVTSQPADLAQLREKL 598 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 +L +G+++ Q+ + L+R+Q Q G AQT + +++ +TE+ P I+ TE+VG Sbjct: 599 GALGLGEVALQSAGSPNDVLIRVQRQDGGEEAQTAAVNKMRQAVTELDPGVKIERTEVVG 658 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 PK+S EL R G + V++SA+ MLIY+W RF+W+FA+GAI TLILD TK +GFFALF ++F Sbjct: 659 PKVSGELARSGFIAVVLSALGMLIYLWWRFEWFFAMGAIITLILDTTKMVGFFALFQLDF 718 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 NLTA+AA+LT IGYSVNDKVVVYDRMR+NM+LY S R+++D SIN+ L R +YTS+ Sbjct: 719 NLTAIAALLTAIGYSVNDKVVVYDRMRENMRLY-KSKPLREIVDMSINQVLVRCIYTSVT 777 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ ++PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + +W Sbjct: 778 TFLCMVPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGNWWQHRK 830 Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 79/176 (44%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ I+ + + ++I + + + A L+L T +L G Sbjct: 355 GPDLGGDAIKMGLITGIVGFVLVAVFIQLLYGV-WGTIANVALLLHTLLTFSALSLIGAT 413 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 414 LTLPGIAGIILGIGIAVDANILINERIREETR---RGLGAMAALDKGFHSAFSTIVDANV 470 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + IS L + +G + FAI M GI + S+F ++ + W + ++ Sbjct: 471 TSLISTLLLFTFGTGPVRGFAITMMLGIAI----SMFTDVTLVRMVMAWYVRKRKL 522 >gi|159184815|ref|NP_354562.2| bifunctional preprotein translocase subunit SecD/SecF [Agrobacterium tumefaciens str. C58] gi|159140100|gb|AAK87347.2| protein-export membrane protein SECD [Agrobacterium tumefaciens str. C58] Length = 857 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 313/836 (37%), Positives = 503/836 (60%), Gaps = 17/836 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W + ++ + IA PN + L+ P+ N+++LGLDL+GGSH++L++ Sbjct: 2 LHFSRWKTVFIWLLVLASVFIASPNLFSEKQLESMPAWYKDNKVTLGLDLQGGSHIMLKI 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + D V L+ ++R+ L+ I + +I + +D E + Q Sbjct: 62 ERSDIVKERLETIVGDVRTQLRDANIRYSGLTGNGQQIQVRISDPAQMEAAKTALRDLTQ 121 Query: 121 GVNSKLNVDPKKNLLVTTTEKE--ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 V++ V + + + + L+ ID +S A+ QS+E++R+R+D++G +E Sbjct: 122 PVSAGTLVGGSITEVTMNDGGDSLLRLNLTDEGIDYRLSSAVSQSIEVVRRRVDEVGTTE 181 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233 IQR GS RI++Q+PG QDP RL+ LL TAK+SF V + M G Sbjct: 182 PLIQRQGSDRIIVQVPGLQDPQRLKSLLNQTAKLSFRMVDTTMPAQDAMNGRPPATSEVL 241 Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +D YLVE + +SG +L A A+F+ +T++PVV FD GA+RF + T+ N+G Sbjct: 242 YSQDDPPVPYLVERRALVSGDNLVDAQASFNQQTNEPVVTFRFDSRGAQRFAQATQQNVG 301 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 KP A+VLD +V++APVI + I G QISG+F+++ A LA +LRAG+LP L +VEER Sbjct: 302 KPFAIVLDNQVISAPVIREPIIGGSGQISGSFSVQGANDLAVLLRAGALPATLTVVEERT 361 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG LG+DSI G A G V +++FM V YG +GL+A+ ++ +NV++ +A+LS++G+T Sbjct: 362 VGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGFFGLLANIALIVNVVMLIAVLSVIGST 421 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGIVL IG+AVDSN+L+ ERIREE + + + +LD GF+RA++TI D+N+T L Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREEVKSGKPLIQALDNGFTRAFATIIDANLTTL 481 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 I VLF+ G G V+GFA+T+ + I+ ++FTA ++ M + +R + K + + Sbjct: 482 IVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPKHLPKGVRTAM 541 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590 D I FMR R I+ + + + GLN GIDF+GG + V A + D Sbjct: 542 ---FDGRDIPFMRYRRVVFMITGVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEAD 598 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ +R L L +G+I QNF ++ L+R+Q Q G A+ + +V+ ++ + Sbjct: 599 LADIRERLNQLNLGEIQAQNFGSPQDVLIRIQAQDGGENAEQSAITLVRGELEDKYDF-- 656 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + E+VGP +S +L +GV+++ A+++YIW+RF+W FALGA+ +++ D+ T+G Sbjct: 657 -RRVEVVGPAVSGDLTVTSTIGVLLAMAAIMVYIWVRFEWQFALGAVISMVHDVVFTIGL 715 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F GIEFNLT++AA+LT+IGYS+ND VV+YDR+R+N++ Y + +ID S+N+TL Sbjct: 716 FVFLGIEFNLTSIAAILTIIGYSLNDTVVIYDRVRENLRRY-KKMPLSMIIDVSLNQTLS 774 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 R++ T + +++L + ++GG VI SF M FG+ + SS++IAAP+L+ Sbjct: 775 RTILTGLTVLLALLALYLFGGEVIRSFTFAMLFGVGIGVFSSVYIAAPVLIAFKLR 830 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 77/175 (44%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + + I G+ I A+ +LI++++ + + F L A LI+++ + ++ G Sbjct: 361 TVGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGF-FGLLANIALIVNVVMLIAVLSVIG 419 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++Y+R+R+ +K + +D + Sbjct: 420 STLTLPGIAGIVLTIGMAVDSNVLIYERIREEVK---SGKPLIQALDNGFTRAFATIIDA 476 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ I + G + FA+ +A GI+ ++ + A + + Sbjct: 477 NLTTLIVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPK 531 >gi|148560403|ref|YP_001259231.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ovis ATCC 25840] gi|148371660|gb|ABQ61639.1| protein-export membrane protein, SecD/SecF family [Brucella ovis ATCC 25840] Length = 844 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 404/834 (48%), Positives = 575/834 (68%), Gaps = 7/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W+V LYS++ IG++IALPNF Q LD PS +PK +++LGLDLRGGS+LVLEV Sbjct: 1 MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D+ RS L+ + I S+R + + + ++ D+ + + + Sbjct: 61 DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120 Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 VN S + +I + L++ + + A++QS+EIIRQR+DQ+G++E Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237 +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V N GV + D + Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y +ED+V +SG L A A FDP+T++P+V FD +GAR+F ++T N+ +P A+V Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VL+APVI + I G QISG+FT++ +L+A+LRAG+LP L ++EER VG DLG Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D+I G + G +L+ +F+++LYG W ++A+ ++ L+ +LT + LSL+GATLTLP I Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWSVIANVALLLHTLLTFSALSLIGATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE RK +LD GF A++TI D+N+T L AT++L Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I +P+ Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+SI+ SI SI L F GLNYGIDFKGGIQ + ++P DL+ +R+ Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L +G+++ Q L+R+Q Q G AQT + +++ +TE+ P I+ TE+V Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL ++ Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY S + R++ID SIN+ L R +YTSM Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAP +L + DW ++ Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAP-MLLLGDWWQRHK 830 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 81/176 (46%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G++ II + + ++I + + + +++ A L+L T +L G Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WSVIANVALLLHTLLTFSALSLIGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + +DK + V ++ Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + ++G + FA+ M GI + S+F ++ I W + ++ Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523 >gi|307320138|ref|ZP_07599558.1| protein-export membrane protein SecD [Sinorhizobium meliloti AK83] gi|306894184|gb|EFN24950.1| protein-export membrane protein SecD [Sinorhizobium meliloti AK83] Length = 844 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 400/832 (48%), Positives = 577/832 (69%), Gaps = 5/832 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W V+ Y I G L ALP+ L +M ++ S +P ++LGLDLRGGSHLVLEV Sbjct: 1 MRTSRWAVLAYVAIIIFGCLAALPSVLTPAMREQVASVLPFEPVTLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L D+ R L+ E + S R N +T+S D++ ++ + K+ Sbjct: 61 DGAGLQKARLNSLLDDTRRVLRGERVSASSARISGNSVTVSIPDAQDRDKVLPKLQELAT 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 V++ P + VTT I++ +++ + ++ A+EQS+EIIR R+DQ+G++E Sbjct: 121 PVSTVGFAAPAPEVEVTTAGDVITLAMTEAGLADRMTKAVEQSLEIIRNRVDQVGVAEPL 180 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSDG 238 IQR+GS+RIL+QLPG QDP+RLR+LLG+TA+MSFH + + ++ +DG Sbjct: 181 IQRIGSNRILVQLPGLQDPTRLRELLGSTAQMSFHMLDQSVDVTQPAPRGVDILPGANDG 240 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 N+Y VE +V ISG L+ A FD +T++PVVD SFD +GAR+F ++TR+N+G+P A+VL Sbjct: 241 NRYPVESRVAISGERLDDAKVGFDQRTNQPVVDFSFDSLGARQFADITRENVGRPFAIVL 300 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 DG+VLTAPVIN+ I G+ QISG+FT+E A +L+A+LR+G+LP L I+EER+VG +LGS Sbjct: 301 DGKVLTAPVINEPILGGRGQISGSFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLGS 360 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 DSI G +AG L+V+ M++LYG WG++A+ + L+ I+T+ +L L+G+TLTLP IA Sbjct: 361 DSIRMGLFTGLAGFGLVVVLMVILYGAWGMIANVGLVLHTIMTIGVLGLIGSTLTLPGIA 420 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GI+LGIG+AVD+NIL+N RIREE +LD+GF++AY+TI DSN+T L TV+LF Sbjct: 421 GIILGIGMAVDANILINARIREETEAGAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLF 480 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 +FG G V+GFA+TM L I ISMFT++++VR +M ++ +KMK ++I S F +P Sbjct: 481 WFGSGPVKGFAVTMMLGIGISMFTSVTVVRLLMREVVVRRKMKKLEI--PSLFGKVPQLP 538 Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 FM+ RF +G S SI S+ L FT GLNYGIDF GGIQ+ ++ ++L +R +L Sbjct: 539 TFSFMKGRFLAIGFSAFLSISSVILFFTPGLNYGIDFIGGIQVEAVSKEKINLPTLRQSL 598 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 E L +G+++ Q+F G ++ L+R+Q QPG AQT L VK +T +P ++++ TE+VG Sbjct: 599 EELNLGEVALQDFGGGQSVLIRVQRQPGGEQAQTVALNKVKDAVTTAIPGASMERTEVVG 658 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 P +S EL R G + V ++ +A+L+YIW RF+W+FA+GAI L+LDITKT+GFFAL GI+F Sbjct: 659 PTVSGELARSGFLAVALAMLAILLYIWFRFEWHFAVGAIAVLLLDITKTVGFFALTGIDF 718 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 NLTA+AA+LT+IGYSVNDKVVVYDRMR+N++ Y S+ F DLID SIN+ + R ++TS A Sbjct: 719 NLTAIAALLTMIGYSVNDKVVVYDRMRENLRKY-KSMPFSDLIDMSINQVIARCIFTSAA 777 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 +S++PMA+WGG + SFA PM FG++VA +SSI+I PILLF+ W + Sbjct: 778 TALSLVPMAIWGGEAVQSFAWPMIFGVIVATTSSIYIGGPILLFLSRWWKER 829 Score = 105 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 74/176 (42%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + + IR G+ + +++ + I + + + A L+L T+G L G Sbjct: 353 SVGPNLGSDSIRMGLFTGLAGFGLVVVLMVILYG-AWGMIANVGLVLHTIMTIGVLGLIG 411 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ +++ R+R+ + +D N+ + + Sbjct: 412 STLTLPGIAGIILGIGMAVDANILINARIREETEA---GAGAMKALDIGFNKAYATIIDS 468 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ + + +G + FA+ M GI ++ +S+ + ++ + R Sbjct: 469 NVTTLAGTVLLFWFGSGPVKGFAVTMMLGIGISMFTSVTVVRLLMREVVVRRKMKK 524 >gi|227820784|ref|YP_002824754.1| bifunctional preprotein translocase subunit SecD/SecF [Sinorhizobium fredii NGR234] gi|227339783|gb|ACP24001.1| protein-export membrane protein SecD/SecF [Sinorhizobium fredii NGR234] Length = 845 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 399/833 (47%), Positives = 567/833 (68%), Gaps = 6/833 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W V+ Y I G L A+P+ L +M ++F S +P ++LGLDLRGGSHLVLEV Sbjct: 1 MRTSRWAVLAYVAIIIFGCLAAVPSVLTPAMREQFASVLPFKPVTLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L D+ R L+ E + S R N +T+S D +E + K+ Sbjct: 61 DGAGLQKARLNSLLDDTRRVLRGERVSASSARISGNSVTVSVPDPADREKVLPKLQELAA 120 Query: 121 GVNSKLNVDPKKNLLVTTTE-KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 V + T I++ +++ + ++ A+EQS+EIIR R+DQ+G++E Sbjct: 121 PVGGTAGFGGSAAEVDVATNGDVITLAMTEAGLADRMTKAVEQSLEIIRNRVDQVGVAEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSD 237 IQR+GS+RIL+QLPG QDP+RLR+LLG+TA+MSFH + + ++ D Sbjct: 181 LIQRIGSNRILVQLPGLQDPTRLRELLGSTAQMSFHMLDQTVDITQPAPRGVDILPGADD 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 GN+Y VE +V ISG L A FD +T++PVVD +FD +GAR+F ++TR+N+G+P A+V Sbjct: 241 GNKYPVESRVAISGERLEDAKVGFDQRTNQPVVDFAFDSLGARQFADITRENVGRPFAIV 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+VLTAPVIN+ I G+ QISGNFT+E A +L+A+LR+G+LP L I+EER+VG +LG Sbjct: 301 LDGKVLTAPVINEPILGGRGQISGNFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 SDSI G +AG L+V M+VLYG WG++A+ + L+ I+T+ +L L+G+TLTLP I Sbjct: 361 SDSIRMGLYTGLAGFGLVVTLMVVLYGAWGMIANVGLVLHTIMTIGVLGLIGSTLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+N RIREE +LD+GF++AY+TI DSN+T L T++L Sbjct: 421 AGIILGIGMAVDANILINARIREETEAGAGAMKALDVGFNKAYATILDSNVTTLAGTILL 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F+ G G VRGFA+TM L I+ISMFT++++VR +M ++ +KMK ++I S F +P Sbjct: 481 FWLGSGPVRGFAVTMMLGIIISMFTSVTVVRLLMREVVVRRKMKKLEI--PSLFGRVPHL 538 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 FM+ RF +G S SI S+ L FT GLNYGIDF GGIQ+ ++ +DL +R + Sbjct: 539 PTFSFMKRRFQAIGFSAFLSISSVILFFTPGLNYGIDFIGGIQVEAVSKDKIDLPTLRHS 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 LE L +G+++ Q+F G ++ LVR+Q QPG QT L +K +T +P ++++ TE+V Sbjct: 599 LEELNLGEVALQDFGGGQSVLVRVQRQPGGEQEQTAALNRIKDAVTTAIPGASMERTEVV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP +S EL R G + V ++ +A+L+YIW RF+W+FA+GAI L+LDITKT+GFFAL GI+ Sbjct: 659 GPTVSGELARSGFLAVGLAMVAILLYIWFRFEWHFAVGAIAVLLLDITKTVGFFALTGID 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT+IGYSVNDKVVVYDRMR+N++ Y S+ F DLID SIN+ + R ++TSM Sbjct: 719 FNLTAIAALLTMIGYSVNDKVVVYDRMRENLRKY-KSMPFSDLIDMSINQVIARCIFTSM 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 A +S++PMA+WGG + SFA PM FG++VA +SSI+I PILLF+ W Sbjct: 778 ATALSLVPMAIWGGEAVRSFAWPMIFGVIVATTSSIYIGGPILLFLSRWWKDR 830 Score = 104 bits (258), Expect = 8e-20, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 73/176 (41%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + + IR G+ + ++ + + + + + A L+L T+G L G Sbjct: 354 SVGPNLGSDSIRMGLYTGLAGFGLVVTLMVVLYG-AWGMIANVGLVLHTIMTIGVLGLIG 412 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ +++ R+R+ + +D N+ + + Sbjct: 413 STLTLPGIAGIILGIGMAVDANILINARIREETEA---GAGAMKALDVGFNKAYATILDS 469 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ + + G + FA+ M GI+++ +S+ + ++ + R Sbjct: 470 NVTTLAGTILLFWLGSGPVRGFAVTMMLGIIISMFTSVTVVRLLMREVVVRRKMKK 525 >gi|325292958|ref|YP_004278822.1| bifunctional preprotein translocase subunit SecD/SecF [Agrobacterium sp. H13-3] gi|325060811|gb|ADY64502.1| bifunctional preprotein translocase subunit SecD/SecF [Agrobacterium sp. H13-3] Length = 854 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 314/836 (37%), Positives = 502/836 (60%), Gaps = 17/836 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W + ++ + IA PN L+ P+ N+++LGLDL+GGSH++L++ Sbjct: 2 LHFSRWKTVFIWLLVLASVFIASPNLFSDKQLEGMPAWYKDNKVTLGLDLQGGSHIMLKI 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + D V L+ ++R+ L+ I + +I + +D E + Q Sbjct: 62 ERSDIVKERLETIVGDVRTQLRDANIRYSGLTGNGQQIQVRISDPAQYEAAKTALRDLTQ 121 Query: 121 GVNSKLNVDPKKNLLVTTTEKE--ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 V++ V + + + + L+ +D +S A+ QS+E++R+R+D++G +E Sbjct: 122 PVSAGTLVGGSITEVTMNDGGDNLLRLNLTDEGVDYRLSSAVSQSIEVVRRRVDEVGTTE 181 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233 IQR GS RI++Q+PG QDP RL+ LL TAK+SF V + M G Sbjct: 182 PLIQRQGSDRIIVQVPGLQDPQRLKSLLNQTAKLSFRMVDTTMPVQEAMNGRPPATSEVL 241 Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +D YLVE + +SG +L A A+F+ +T++PVV FD GA+RF + T+ N+G Sbjct: 242 YSQDDPPVPYLVERRALVSGDNLVDAQASFNQQTNEPVVTFRFDSRGAQRFAQATQQNVG 301 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 KP A+VLD +V++APVI + I G QISG+F+++ A LA +LRAG+LP L +VEER Sbjct: 302 KPFAIVLDNQVISAPVIREPIIGGSGQISGSFSVQGANDLAVLLRAGALPATLTVVEERT 361 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG LG+DSI G A G V +++FM V YG +GL+A+ ++ +NV++ +A+LS++G+T Sbjct: 362 VGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGFFGLLANIALIVNVVMLIAVLSVIGST 421 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGIVL IG+AVDSN+L+ ERIREE + + + SLD GF+RA++TI D+N+T L Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREEVKSGKPLIQSLDNGFTRAFATIIDANLTTL 481 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 I VLF+ G G V+GFA+T+ + I+ ++FTA ++ M + +R + K + + Sbjct: 482 IVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPKHLPKGVRTAM 541 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590 D I FMR R I+ + + + GLN GIDF+GG + V A + D Sbjct: 542 ---FDGRDIPFMRYRRVVFMITGVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEAD 598 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ +R L L +G+I QNF ++ L+R+Q Q G A+ + +V+ ++ + Sbjct: 599 LADIRERLNQLNLGEIQAQNFGTPQDVLIRIQAQDGGENAEQSAITLVRGELQDKYDF-- 656 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + E+VGP +S +L +GV+++ A++IYIW+RF+W FALGA+ +++ D+ T+G Sbjct: 657 -RRVEVVGPAVSGDLTVTSTIGVVLAMAAIMIYIWVRFEWQFALGAVISMVHDVVFTIGL 715 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F GIEFNLT++AA+LT+IGYS+ND VV+YDR+R+N++ Y + +ID S+N+TL Sbjct: 716 FVFLGIEFNLTSIAAILTIIGYSLNDTVVIYDRVRENLRRY-KKMPLSMIIDVSLNQTLS 774 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 R++ T + +++L + ++GG VI SF M FG+ + SS++IAAP+L+ Sbjct: 775 RTILTGLTVLLALLALYLFGGEVIRSFTFAMLFGVGIGVFSSVYIAAPVLIAFKLR 830 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 76/173 (43%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I G+ I A+ +LI++++ + + F L A LI+++ + ++ G Sbjct: 363 GPSLGNDSITAGLTASAIGAVGVLIFMFVFYGF-FGLLANIALIVNVVMLIAVLSVIGST 421 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+R+R+ +K + +D + ++ Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREEVK---SGKPLIQSLDNGFTRAFATIIDANL 478 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 I + G + FA+ +A GI+ ++ + A + + Sbjct: 479 TTLIVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPK 531 >gi|209964334|ref|YP_002297249.1| bifunctional preprotein translocase subunit SecD/SecF [Rhodospirillum centenum SW] gi|209957800|gb|ACI98436.1| protein-export membrane protein SecD [Rhodospirillum centenum SW] Length = 847 Score = 468 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 345/835 (41%), Positives = 525/835 (62%), Gaps = 17/835 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 +P + + IC +G++ +LP+ L P+ +P I+LGLDL+GGS+L+L+VD D Sbjct: 5 SPLRTAVVTAICLLGVIFSLPSLL---PAGTLPAWLPYRHINLGLDLQGGSYLLLQVDAD 61 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 L D+ R+ L+ GI + + +T+SFAD + + Sbjct: 62 TVRKETLSSAGDQARALLRDAGIRPTGVTADADTVTVSFADDAQVSPAVAALRPLWGPIG 121 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + + L++ + ++QS+EI+R+RID+ G++E + R Sbjct: 122 PGQPGEFDAAEAPR----AVRLTLTEGGFQAKMDRVVQQSLEIVRRRIDETGVNEPIVAR 177 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DS 236 GS RIL+QLPG DP R+++LLG TAKM+FH V+ + + + Sbjct: 178 QGSGRILVQLPGVSDPGRIKRLLGQTAKMTFHLVVDDATLNPGSPPPPGTEWLPNADRGA 237 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 G + LV +VE+ G L A + D +T + VV+ FD +GARRF ++T+DN+G+ A+ Sbjct: 238 GGGRVLVRKRVEVDGATLVDAQPSADSRTGQWVVNFRFDSIGARRFGDITKDNVGRLFAI 297 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLDGRV++AP IN+ I G+ QISG+FT ++A LA +LRAG+LP L +VEER++G +L Sbjct: 298 VLDGRVISAPRINEPILGGRGQISGSFTAQSATELAVLLRAGALPAPLTVVEERSIGPEL 357 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G++SI G A + G VL+V +M + YG+ G A+ ++ N+ LT+A LSLL ATLTLP Sbjct: 358 GAESIRAGLIACLVGFVLVVSYMAMAYGRLGFYANVALIFNLFLTIAALSLLEATLTLPG 417 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAG++L +G++VD+NIL+NER+REE R+ ++ +L+ GFS+AY+TI DSN+T LI ++ Sbjct: 418 IAGLLLTLGMSVDANILINERVREEARRGRTPLAALEAGFSKAYATITDSNLTTLIKMII 477 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 L+ G G V+GFA+T+ L I+ SMFTA + R + R K K + + R PD Sbjct: 478 LYAVGTGTVKGFAVTISLGIITSMFTATVVARMITARWFRRVKPKILKVGTWLRPA--PD 535 Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 + I FMR R G+ +S+L S SI L GLNYGIDF GGI + V D+ +R Sbjct: 536 NLNISFMRGRHIGIAMSVLLSAASIALFVKPGLNYGIDFAGGIVIEVRTPEATDIDRLRD 595 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 + + G ++ Q F ++ L+RL+ Q G AQ +V++ ++ K+ EI P I+ E Sbjct: 596 AVSGIATGSVAIQEFGSPRDTLIRLERQEGAEEAQQQVVKTLQAKLVEIYPGLEIRRVEA 655 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG +S EL + G++ + ++AIAML YI RF+W F +GA+ T++LD+TKT+GFFAL GI Sbjct: 656 VGASVSAELFQNGMIALGLAAIAMLAYITFRFEWQFGVGAVVTMMLDVTKTIGFFALTGI 715 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 +FNLTA+AA+LT++GYS+NDKVVVYDR+R+N++LY + R+LID+SINET+GR++ TS Sbjct: 716 QFNLTAIAAILTIMGYSINDKVVVYDRVRENLRLYRK-MPLRELIDRSINETMGRTISTS 774 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +A F++ LP+A++ G + FA + FG+V+A SSSIFIAAPILL++ + R + Sbjct: 775 IAIFLATLPLALFAGEGLREFAWVLLFGVVLATSSSIFIAAPILLYLGEKRLRRG 829 >gi|15964322|ref|NP_384675.1| bifunctional preprotein translocase subunit SecD/SecF [Sinorhizobium meliloti 1021] gi|307307058|ref|ZP_07586797.1| protein-export membrane protein SecD [Sinorhizobium meliloti BL225C] gi|15073499|emb|CAC45141.1| Putative protein-export membrane protein [Sinorhizobium meliloti 1021] gi|306901998|gb|EFN32597.1| protein-export membrane protein SecD [Sinorhizobium meliloti BL225C] Length = 844 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 401/832 (48%), Positives = 577/832 (69%), Gaps = 5/832 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W V+ Y I G L ALP+ L +M ++ S +P ++LGLDLRGGSHLVLEV Sbjct: 1 MRTSRWAVLAYVAIIIFGCLAALPSVLTPAMREQVASVLPFEPVTLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L D+ R L+ E + S R N +T+S D++ ++ + K+ Sbjct: 61 DGAGLQKARLNSLLDDTRRVLRGERVSASSARISGNSVTVSIPDAQDRDKVLPKLQELAT 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 V++ P + VTT I++ +++ + ++ A+EQS+EIIR R+DQ+G++E Sbjct: 121 PVSTVGFAAPAPEVEVTTAGDVITLAMTEAGLADRMTKAVEQSLEIIRNRVDQVGVAEPL 180 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSDG 238 IQR+GS+RIL+QLPG QDP+RLR+LLG+TA+MSFH + + ++ +DG Sbjct: 181 IQRIGSNRILVQLPGLQDPTRLRELLGSTAQMSFHMLDQSVDVTQPAPRGVDILPGANDG 240 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 N+Y VE +V ISG L+ A FD +T++PVVD SFD +GAR+F ++TR+N+G+P A+VL Sbjct: 241 NRYPVESRVAISGERLDDAKVGFDQRTNQPVVDFSFDSLGARQFADITRENVGRPFAIVL 300 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 DG+VLTAPVIN+ I G+ QISG+FT+E A +L+A+LR+G+LP L I+EER+VG +LGS Sbjct: 301 DGKVLTAPVINEPILGGRGQISGSFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLGS 360 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 DSI G +AG L+V+ M+VLYG WG++A+ + L+ I+T+ +L L+G+TLTLP IA Sbjct: 361 DSIRMGLFTGLAGFGLVVVLMVVLYGAWGMIANVGLVLHTIMTIGVLGLIGSTLTLPGIA 420 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GI+LGIG+AVD+NIL+N RIREE +LD+GF++AY+TI DSN+T L TV+LF Sbjct: 421 GIILGIGMAVDANILINARIREETEAGAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLF 480 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 +FG G V+GFA+TM L I ISMFT++++VR +M ++ +KMK ++I S F +P Sbjct: 481 WFGSGPVKGFAVTMMLGIGISMFTSVTVVRLLMREVVVRRKMKKLEI--PSLFGKVPQLP 538 Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 FM+ RF +G S SI S+ L FT GLNYGIDF GGIQ+ ++ ++L +R +L Sbjct: 539 TFSFMKGRFLAIGFSAFLSISSVILFFTPGLNYGIDFIGGIQVEAVSKEKINLPTLRQSL 598 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 E L +G+++ Q+F G ++ L+R+Q QPG AQT L VK +T +P ++++ TE+VG Sbjct: 599 EELNLGEVALQDFGGGQSVLIRVQRQPGGEQAQTVALNKVKDAVTTAIPGASMERTEVVG 658 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 P +S EL R G + V ++ +A+L+YIW RF+W+FA+GAI L+LDITKT+GFFAL GI+F Sbjct: 659 PTVSGELARSGFLAVALAMLAILLYIWFRFEWHFAVGAIAVLLLDITKTVGFFALTGIDF 718 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 NLTA+AA+LT+IGYSVNDKVVVYDRMR+N++ Y S+ F DLID SIN+ + R ++TS A Sbjct: 719 NLTAIAALLTMIGYSVNDKVVVYDRMRENLRKY-KSMPFSDLIDMSINQVIARCIFTSAA 777 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 +S++PMA+WGG + SFA PM FG++VA +SSI+I PILLF+ W + Sbjct: 778 TALSLVPMAIWGGEAVQSFAWPMIFGVIVATTSSIYIGGPILLFLSRWWKER 829 Score = 96.3 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 3/139 (2%) Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 + A L+L T+G L G L +A ++ IG +V+ +++ R+R+ + Sbjct: 389 GMIANVGLVLHTIMTIGVLGLIGSTLTLPGIAGIILGIGMAVDANILINARIREETEA-- 446 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 +D N+ + +++ + + +G + FA+ M GI ++ +S Sbjct: 447 -GAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLFWFGSGPVKGFAVTMMLGIGISMFTS 505 Query: 813 IFIAAPILLFIYDWRAKNA 831 + + ++ + R Sbjct: 506 VTVVRLLMREVVVRRKMKK 524 >gi|222148961|ref|YP_002549918.1| bifunctional preprotein translocase subunit SecD/SecF [Agrobacterium vitis S4] gi|221735947|gb|ACM36910.1| protein-export membrane protein SECD [Agrobacterium vitis S4] Length = 856 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 326/836 (38%), Positives = 504/836 (60%), Gaps = 17/836 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W IL + +LIALP+ + L R PS P +++LGLDL+GGSH++L++ Sbjct: 2 LHFSRWKTILLWLAVVASVLIALPDLFSKDQLARLPSWFPSKQMTLGLDLQGGSHIMLKI 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + +D V L+ ++RS L+ G+ + + + + D + + Sbjct: 62 ERNDIVKERLEAVVGDIRSSLRDAGVRYTGLNGVGQAVQVRITDPAQLDAARKALQTLTA 121 Query: 121 GVN--SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 V+ + ++ L + + + L+ ID +S A+ QS+E++R+R+D++G +E Sbjct: 122 PVSTGGFGSSSVQEATLDDSGDGVLKFNLTDAGIDYRMSSALTQSIEVVRRRVDELGNTE 181 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233 IQR GS RI++Q+PG DP RL+ LL TAK+SF V + S + G Sbjct: 182 PLIQRQGSDRIIVQVPGLDDPQRLKNLLNQTAKLSFRMVDTSMSATEAISGRPPATSEVL 241 Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +D YLVE +V +SG L A A+F+ + ++PVV FD GA+RF + T+ N+G Sbjct: 242 YSQDEAAVPYLVEKRVLVSGEDLVDAQASFNQQNNEPVVSFRFDSRGAQRFAQATQQNVG 301 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 +P A+VLD +V++APVI + I G QISGNFT++ A LA +LRAG+LP L +VEER Sbjct: 302 RPFAIVLDNQVISAPVIREPIVGGSGQISGNFTVQGANDLAVLLRAGALPATLTVVEERT 361 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG LG+DSI G A G L+V+ MI LYG +G++A ++F N+++ +A+L+LLG+T Sbjct: 362 VGPSLGADSIRAGVSAGFIGAALVVVLMIGLYGFFGVLAVLALFANIVMIIAILTLLGST 421 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGIVL IG+AVDSN+L+ ERIREE + +S+ S+D+GF++A +TI D+N+T L Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREEYKSGRSLIQSIDIGFNKALATIVDANVTTL 481 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 IA VLFF G G VRGF++T+ + I+ ++FTA + R M + ++ K++ + Sbjct: 482 IAAGVLFFLGSGPVRGFSVTLAIGIITTVFTAFGLTRWMFTVWVNTRRPKALPKGVRT-- 539 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590 I D I FM R + +S SI ++ T G+ GIDF GG + + A + D Sbjct: 540 -GIFDGTNIPFMGVRRYTFLLSAALSIAALVGFGTVGMKLGIDFTGGSIIELKARQGNAD 598 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R L SL +GD+ Q F + LVRLQ Q + + V+ + + Sbjct: 599 PAAIREQLSSLNLGDVQVQGFGDPSSVLVRLQAQDEGENGEQSAVAKVRGALEQAYEF-- 656 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + TE+VGP +S EL + +GV+IS +A+L+YIWIRF+W FA GAI + D+ TLG Sbjct: 657 -RRTEVVGPSVSGELTKSATIGVLISLMAILVYIWIRFEWQFAAGAIIATLHDVILTLGL 715 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 + + G+EF+L+++AA+LT++GYS+ND VVVYDRMR+N++ Y + LID SIN+TL Sbjct: 716 YVVTGVEFDLSSIAAILTIVGYSLNDTVVVYDRMRENLRRY-KKMPLDVLIDTSINQTLS 774 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 R++ TS+ +++L + ++GG VI SF M FG++V SSI++AAP+L+ Sbjct: 775 RTILTSVTTLLALLALFLFGGEVIRSFTFAMLFGVLVGTFSSIYMAAPVLIAFRLR 830 Score = 127 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + + IR G+ I A +++ + + + F + A+ L +I + L G Sbjct: 361 TVGPSLGADSIRAGVSAGFIGAALVVVLMIGLYGF-FGVLAVLALFANIVMIIAILTLLG 419 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++Y+R+R+ Y + S ID N+ L V Sbjct: 420 STLTLPGIAGIVLTIGMAVDSNVLIYERIREE---YKSGRSLIQSIDIGFNKALATIVDA 476 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + G + F++ +A GI+ ++ + + + R A Sbjct: 477 NVTTLIAAGVLFFLGSGPVRGFSVTLAIGIITTVFTAFGLTRWMFTVWVNTRRPKA 532 >gi|315498262|ref|YP_004087066.1| protein-export membrane protein secd [Asticcacaulis excentricus CB 48] gi|315416274|gb|ADU12915.1| protein-export membrane protein SecD [Asticcacaulis excentricus CB 48] Length = 863 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 287/848 (33%), Positives = 491/848 (57%), Gaps = 28/848 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + W + L +++ +G+ +LPN LP+++LD++ + +PKN ++LGLDL+GGSHL+LEV Sbjct: 2 MQLSRWKITLVTLVTLLGIWFSLPNLLPKTVLDQY-AFLPKNGLNLGLDLQGGSHLLLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + ++ ++E R L+ GI S+ + +++ ++ + +T Sbjct: 61 DTEALARDKIKNLTEETRDRLRSAGIAFGSLTAQGDVVSVRINEAGRVDAAVTALTPLSN 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + + + + ++ I + ++ S A++ S+E +R+R+D +G E T Sbjct: 121 PLVNN--PSARDVAITKEADQVIHLTYTKEGKAAASSGAVDASIETVRRRVDNLGTREPT 178 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------- 232 I R G++RI++Q PGE DP +L++++GTTAK++F V + S G Sbjct: 179 IIRQGTNRIVVQAPGESDPEQLKRVIGTTAKLTFQMVDESASPADVAAGRVPPGSELLPT 238 Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 + +V+ +V +SG +L A + D +P + FD GAR+F E T NIG+ Sbjct: 239 SDPTLPPSMVVKKRVIVSGENLTKAFVDTDQSN-RPAIGFRFDGEGARKFGEATSQNIGR 297 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 P A++LDG+V++AP I AI G QI+GNFT++ A L +L G+L LNI E+R V Sbjct: 298 PFAIILDGKVVSAPRIISAITGGSGQITGNFTVQEASELVNVLNGGALTAPLNIEEQRVV 357 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIV-LYGKWGLVADFSIFLNVILTLALLSLLGAT 411 A+LG+DS+ KG + + + +++FM++ +G ++ ++ +N+IL +A +S+ AT Sbjct: 358 SAELGADSVAKGQLSTIIAFISVLIFMLLAYGWLFGGISIAALIVNLILIIAGMSVTQAT 417 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAG++L + +AVD+N+L+ ER+R+E R ++V +LD GFS+A TI D+N+T+L Sbjct: 418 LTLPGIAGLILTLAVAVDANVLIYERMRDEIRAGRNVIGALDAGFSKAMETIIDANLTSL 477 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI------ 525 A ++FFFG G VRGFA T+ L ++ S+F+A+ + + ++ + ++ K++ I Sbjct: 478 GAAAIMFFFGAGPVRGFAWTLSLGVITSVFSAVMVTQLLLAWWYNARRPKTLPIQAADGK 537 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL------NYGIDFKGGI 579 ++P F+R IS++ S+ N G+DFKGG Sbjct: 538 GVWPLIKILPQKTNFGFVRFSKLAGIISMVLVAASLFFTIWPATPPCGGLNCGVDFKGGT 597 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 L + +DL+ +RS L++L + D+ Q + P + L+ V+ Sbjct: 598 ILEMSQKSTIDLAKLRSTLDTLDLHDVQVQGAGQSGQDAMIRFESPTTNA--QAALDRVQ 655 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 I P ++ + +VGPK+S EL GI+ ++ + M++YIW RF+W F +GA+ Sbjct: 656 TSIKAQFPDASFKPATVVGPKVSGELFTGGILALVFAIGLMMVYIWFRFEWQFGMGAVVG 715 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L+ D+ T G FA+F +EF LTAVAA+LT+IGYS+ND VVV+DR+R+N++ Y + +D Sbjct: 716 LMHDVILTFGLFAIFRLEFTLTAVAAILTIIGYSMNDTVVVFDRIRENLRKY-KKMPLKD 774 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +ID SINETL R++ T + A +++ +AV GG + SF++ + FGI++ SSI++AAP+ Sbjct: 775 VIDLSINETLSRTIITGVTAVMALTGLAVLGGEALFSFSVALIFGIIIGTYSSIYVAAPV 834 Query: 820 LLFIYDWR 827 +L R Sbjct: 835 ILLWGVNR 842 Score = 134 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 85/177 (48%), Gaps = 3/177 (1%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 +V ++ + + KG + II+ I++LI++ + + W F +I LI+++ + ++ Sbjct: 354 QRVVSAELGADSVAKGQLSTIIAFISVLIFMLLAYGWLFGGISIAALIVNLILIIAGMSV 413 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 L +A ++ + +V+ V++Y+RMR ++ + +D ++ + + Sbjct: 414 TQATLTLPGIAGLILTLAVAVDANVLIYERMRDEIRA---GRNVIGALDAGFSKAMETII 470 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ + + M +G + FA ++ G++ + S++ + +L + Y+ R Sbjct: 471 DANLTSLGAAAIMFFFGAGPVRGFAWTLSLGVITSVFSAVMVTQLLLAWWYNARRPK 527 >gi|150395408|ref|YP_001325875.1| bifunctional preprotein translocase subunit SecD/SecF [Sinorhizobium medicae WSM419] gi|150026923|gb|ABR59040.1| protein-export membrane protein SecD [Sinorhizobium medicae WSM419] Length = 844 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 395/832 (47%), Positives = 575/832 (69%), Gaps = 5/832 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + W V+ Y I G L ALP+ L +M ++ S +P ++LGLDLRGGSHLVLEV Sbjct: 1 MHTSRWAVLAYVAIIIFGCLAALPSVLTPAMREQVASVLPFEPVTLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L D+ R L+ E + S R N +T+S D++ ++ + K+ Sbjct: 61 DGAGLQKARLNSLLDDTRRVLRGERVSASSARISGNGVTVSIPDAQDRDKVLPKLQELAT 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 V++ + V+TT I++ +++ + ++ A+EQS+EIIR R+DQ+G++E Sbjct: 121 PVSTVGFAASAPEVEVSTTGDVITLGMTEAGLADRMTKAVEQSLEIIRNRVDQVGVAEPL 180 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSDG 238 IQR+GS+RIL+QLPG QDP+RLR+LLG+TA+MSFH + + ++ DG Sbjct: 181 IQRIGSNRILVQLPGLQDPTRLRELLGSTAQMSFHMLDQSVDVTQPAPRGVDILPGADDG 240 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 N+Y VE ++ ISG L A FD +T++PVVD +FD +GAR+F ++TR+N+G+P A+VL Sbjct: 241 NRYAVETRIAISGERLEDAKVGFDQRTNQPVVDFTFDSLGARQFADITRENVGRPFAIVL 300 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 DG+VLTAPVIN+ I G+ QISG+FT+E A +L+A+LR+G+LP L I+EER+VG +LGS Sbjct: 301 DGKVLTAPVINEPILGGRGQISGSFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLGS 360 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 DSI G +AG L+V+ M+VLYG WG++A+ + L+ I+T+ +L L+G+TLTLP IA Sbjct: 361 DSIRMGLFTGLAGFGLVVVLMVVLYGAWGMIANVGLVLHTIMTIGILGLIGSTLTLPGIA 420 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GI+LGIG+AVD+NIL+N RIREE +LD+GF++AY+TI DSN+T L TV+LF Sbjct: 421 GIILGIGMAVDANILINARIREETEAGAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLF 480 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 +FG G V+GFA+TM L I ISMFT++++VR +M ++ +KMK + S F +P Sbjct: 481 WFGSGPVKGFAVTMMLGIGISMFTSVTVVRLLMREVVVRRKMKKL--VIPSLFGPVPRLP 538 Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 + FM+ RF +G S SI S+ L FT GLNYGIDF GGIQ+ ++ +DL+ +R ++ Sbjct: 539 SFSFMKGRFLAIGFSAFLSISSVVLFFTPGLNYGIDFIGGIQVEAVSKEKIDLATLRRSV 598 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 E L +G+++ Q+F G ++ L+R+Q QPG AQ+ L VK +T +P ++++ TE+VG Sbjct: 599 EELNLGEVALQDFGGGQSVLIRVQRQPGGEQAQSLALNKVKDAVTTAIPGASMERTEVVG 658 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 P +S EL R G + V ++ +A+L+YIW RF+W+FA+GAI L+LDITKT+GFFAL GI+F Sbjct: 659 PTVSGELARSGFLAVALAMVAILLYIWFRFEWHFAVGAIAVLLLDITKTVGFFALTGIDF 718 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 NLTA+AA+LT+IGYSVNDKVVVYDRMR+N++ Y S++F DLID SIN+ + R ++TS A Sbjct: 719 NLTAIAALLTMIGYSVNDKVVVYDRMRENLRRY-KSMAFSDLIDLSINQVIARCIFTSAA 777 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 +S++PMA+WGG + SFA PM FG++VA +SSI+I PILLF+ W + Sbjct: 778 TALSLVPMAIWGGEAVQSFAWPMIFGVIVATTSSIYIGGPILLFLSRWWKER 829 Score = 96.3 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 3/139 (2%) Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 + A L+L T+G L G L +A ++ IG +V+ +++ R+R+ + Sbjct: 389 GMIANVGLVLHTIMTIGILGLIGSTLTLPGIAGIILGIGMAVDANILINARIREETEA-- 446 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 +D N+ + +++ + + +G + FA+ M GI ++ +S Sbjct: 447 -GAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLFWFGSGPVKGFAVTMMLGIGISMFTS 505 Query: 813 IFIAAPILLFIYDWRAKNA 831 + + ++ + R Sbjct: 506 VTVVRLLMREVVVRRKMKK 524 >gi|83952734|ref|ZP_00961464.1| protein-export membrane protein SecD [Roseovarius nubinhibens ISM] gi|83835869|gb|EAP75168.1| protein-export membrane protein SecD [Roseovarius nubinhibens ISM] Length = 877 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 305/863 (35%), Positives = 469/863 (54%), Gaps = 41/863 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSA 38 ++ + W IL + IGLL+A PN L ++P+ Sbjct: 2 LKIDLWKRILIWGVVLIGLLLAAPNGFYNRVETHNDAAKLVEQGADPASVSDELAQWPTW 61 Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK- 97 +P ++LGLDLRGG+HL++EV + L+ E+R L+ V ++R Q Sbjct: 62 LPSGLVNLGLDLRGGAHLLVEVRVQEVYQARLEAMWPEVRDLLRDNRGEVGAIRLQQENA 121 Query: 98 --ITLSF-ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154 + + V + V S + + + LS+ Sbjct: 122 EELVVQLVQKPEAVSQAVTLVRGLARPVTSLTGAGSNDIEVS-ARGDSVVVRLSEAEQRA 180 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 + Q++EIIR+RID++G E TIQR G+ RILIQ+PG L+ ++GTTAK++F Sbjct: 181 TDERTVRQALEIIRRRIDEVGTREPTIQRQGAERILIQVPGIGSAEELKAIIGTTAKLTF 240 Query: 215 HKV----LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 V N + G + D +G Y++E ++G L A +FD +P V Sbjct: 241 QPVVSRTSNANERPGAGNEILPSLDEEGVYYILERAPVVTGEELVDAQPDFDQNG-RPAV 299 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 F+ GAR+F T +NIG P A+VLDG V++APVI IP G I+G FT+E Sbjct: 300 SFRFNTTGARKFGNYTAENIGNPFAIVLDGEVISAPVIQSHIPGGSGIITGQFTVEETTN 359 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LA +LRAG+LP L+ +EER +G +LG+DSI G A L++ FM YG++GL A Sbjct: 360 LAVLLRAGALPAGLDFLEERTIGPELGADSIEAGKIACFVAFALVLAFMWASYGRFGLFA 419 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + ++ +NV L LLSL+GATLTLP IAGIVL IG+AVD+N+L+ ERIREE + Sbjct: 420 NIALIVNVGLIFGLLSLIGATLTLPGIAGIVLTIGMAVDANVLIFERIREEMATAKGPAR 479 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 ++++G+ +A S I D+NIT I V+LF G G VRGF+IT+GL I+ S+FTAI + R + Sbjct: 480 AIELGYEKALSAIVDANITTFITAVILFVMGSGPVRGFSITLGLGIITSLFTAIYVTRLL 539 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570 ++ K+ KS+ L+P F R +G S+L + ++ GLN Sbjct: 540 VVMWYDRKRPKSV--LQGRSLKLVPQVTNWDFFRRWKLSIGASVLMILVAVTSFGAQGLN 597 Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQ 624 +GIDF+GG + + +D+ R +E L +GD + +VR+Q Q Sbjct: 598 FGIDFRGGTTIRTESAESIDIGTYRGAIEELGLGDVTITEVFDPTFAPDQNVAMVRIQAQ 657 Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 ++ V+ + VP + E VGPK+S ELI ++ V+++ A+L+YI Sbjct: 658 DDQESVTAELINSVEAALAAAVPDIKFTSVESVGPKVSGELITTAVIAVMLAIGAVLVYI 717 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 W+RF+W FALGA+ L+ D+ T+G FA+F I+F+L +AA+LT++GYS+ND VVV+DR+ Sbjct: 718 WLRFEWQFALGAVAALVHDVVLTIGVFAIFQIQFDLAIIAALLTIVGYSLNDTVVVFDRV 777 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+N++ Y ++++ SINETL R++ TS+ ++++ + GG VI F M +G Sbjct: 778 RENLRKYKKKQ-LGEVLNLSINETLSRTMMTSVTTLLALVALYFLGGDVIRGFVFAMIWG 836 Query: 805 IVVAASSSIFIAAPILLFIYDWR 827 ++V SS+F+A+ ILL + R Sbjct: 837 VIVGTYSSVFVASTILLKLGVKR 859 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 86/176 (48%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ + I G + ++ +L ++W + F L A LI+++ G +L G Sbjct: 380 TIGPELGADSIEAGKIACFVAFALVLAFMWASYG-RFGLFANIALIVNVGLIFGLLSLIG 438 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++++R+R+ M T+ I+ + L V Sbjct: 439 ATLTLPGIAGIVLTIGMAVDANVLIFERIREEMA---TAKGPARAIELGYEKALSAIVDA 495 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ FI+ + + V G + F+I + GI+ + ++I++ +++ YD + + Sbjct: 496 NITTFITAVILFVMGSGPVRGFSITLGLGIITSLFTAIYVTRLLVVMWYDRKRPKS 551 >gi|114707235|ref|ZP_01440133.1| probable protein-export membrane protein [Fulvimarina pelagi HTCC2506] gi|114537431|gb|EAU40557.1| probable protein-export membrane protein [Fulvimarina pelagi HTCC2506] Length = 856 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 331/836 (39%), Positives = 515/836 (61%), Gaps = 19/836 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W IL ++ +G+L ALPN P+S+LD FP +P ++++LGLDL+GGS+++L+VDE+ Sbjct: 5 SRWKSILIWLVVAVGILYALPNVFPRSVLDGFPDFLPNDQVTLGLDLQGGSYILLQVDEE 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 D + +Q D RS L++ +G ++ + IT+ D E + ++ + V+ Sbjct: 65 DLIAKRVQSLGDSARSSLRQARVGYSAIAENDRSITIRLRDPDQTEAAQEALSELAEPVS 124 Query: 124 SKLNVDPK--KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S L + + T I + L+ +D S A+EQS+E++R+R+D++G +E I Sbjct: 125 SGLLSGGTLSEAEISTPQSGVIEVSLTPEGVDYRTSSAVEQSIEVVRRRVDELGTTEPVI 184 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL---------PNNSKKGFMFGVRF 232 QR G++RI++Q+PG DP RL+ LL TA+++F V +++ + + Sbjct: 185 QRQGTNRIIVQVPGLGDPDRLKNLLNQTAQLNFRMVDLTASPEAVANGDARPPAGSELLY 244 Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 D LV+ +V +SG +L A FD +T++PVV+I FD G +F VT+ N+G Sbjct: 245 TTDQPPEPLLVQRQVMVSGENLVDAQPGFDQQTNEPVVNIRFDNRGGTQFARVTQANVGS 304 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 P A+VLD +VL+AP I + I G+AQISGNF +++A LA +LRAG+LP L+I+EER V Sbjct: 305 PFAMVLDNQVLSAPNIREPILGGQAQISGNFDVQSANDLAVLLRAGALPANLDILEERTV 364 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G LG+DSI G A V G +L+++FMI YG G++A+ ++ +NV+L A+L+ +GATL Sbjct: 365 GPGLGADSIAAGEIAGVIGAILVIVFMIAAYGFLGVIANLALAINVVLLFAILTAIGATL 424 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 TLP IAGIVL IG+AVDSN+L+ ERIRE + +S+ S+D+GF +A +TI D+NIT L Sbjct: 425 TLPGIAGIVLTIGMAVDSNVLIYERIREERRKHGRSIVQSIDVGFQKALATILDANITTL 484 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 IA +LF+ G G VRGFA+T+ + IL ++FTA ++ R ++ + ++ ++ K + + Sbjct: 485 IAAGILFWLGSGPVRGFAVTLAIGILTTVFTAYTLTRWLVAYWVKTRRPKELPQGFIR-- 542 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590 L+P+ I+FM R +S+ + S+ +L GLN+GIDF GG + V A P D Sbjct: 543 -LVPESTFIRFMLFRLKAFYLSLALVVASMVVLPLIGLNFGIDFTGGSVIEVRAKEGPAD 601 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R+ L+ I D+ Q+F L+R+ P + E ++ + Sbjct: 602 VGGIRTTLDEAGIPDVQVQSFGTNSEALIRIGNAPDAPDGAQQ--ETIQTAQASLEEAYD 659 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I+ TE+VGP +S EL I GV+ S + +L+YIWIRF+W FA+GAI I D+ TLGF Sbjct: 660 IRRTEVVGPTVSGELAWAAIFGVLASLLGILVYIWIRFEWQFAIGAIVATINDVFLTLGF 719 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L IEFNL VAA+LT++GYS+ND VV+YDR+R+N++ + T DL+D S NE L Sbjct: 720 MVLTQIEFNLATVAAILTIVGYSLNDTVVIYDRVRENLRRFKTKK-LGDLLDLSDNEMLS 778 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 R++ TS+ +++ + V+GG VI +F PM FG+++ SSIF+AAP+L F Sbjct: 779 RTLTTSLTTLLALSALYVFGGEVIQNFVAPMMFGVLIGTFSSIFVAAPMLYFFNLR 834 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 89/263 (33%), Gaps = 9/263 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 + + + R ++ + +R G + Sbjct: 275 QQTNEPVVNIRFDNRGGTQFARVTQANVGSPFAMVLDNQVLSAPNIREPILGGQAQISGN 334 Query: 634 VLEMVKKKIT------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + I VGP + + I G + +I AI +++++ Sbjct: 335 FDVQSANDLAVLLRAGALPANLDILEERTVGPGLGADSIAAGEIAGVIGAILVIVFMIAA 394 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + + + A L +++ G L +A ++ IG +V+ V++Y+R+R+ Sbjct: 395 YGF-LGVIANLALAINVVLLFAILTAIGATLTLPGIAGIVLTIGMAVDSNVLIYERIREE 453 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + + S ID + L + ++ I+ + G + FA+ +A GI+ Sbjct: 454 RRKH--GRSIVQSIDVGFQKALATILDANITTLIAAGILFWLGSGPVRGFAVTLAIGILT 511 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 ++ + ++ + R Sbjct: 512 TVFTAYTLTRWLVAYWVKTRRPK 534 >gi|85703422|ref|ZP_01034526.1| protein-export membrane protein SecD [Roseovarius sp. 217] gi|85672350|gb|EAQ27207.1| protein-export membrane protein SecD [Roseovarius sp. 217] Length = 878 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 303/859 (35%), Positives = 479/859 (55%), Gaps = 42/859 (4%) Query: 6 WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43 W + + +GL++ALPN L +P MP N Sbjct: 7 WKRLCIWGLVALGLMLALPNGFYGKVERHNDAVAAVEAGVDPATVTEDLAVWPEWMPSNL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-----KI 98 ++LGLDLRGG+HL+ EV +D ++ E+R L++E V +R +I Sbjct: 67 VNLGLDLRGGAHLLAEVKVEDVYQARVEGMWPEVRDLLREERDRVGPIRLQTTEAPELRI 126 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 L E A V + V L ++ VT+ +I + LS+ Sbjct: 127 RLVERPEMAAEAAA-LVRGIARPVTDTLTGVGGSDIDVTSEGADIIVRLSEAERRATDDR 185 Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218 + Q++EIIR+RID++G E TIQR G+ RILIQ+PG + L+ L+GTTA+++F V+ Sbjct: 186 TVRQALEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSAAELKALIGTTAQLTFQPVI 245 Query: 219 PNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274 S G D +G Y++E ++G L A +FD +P V F Sbjct: 246 SRASSADAQAGAGNEVLPSLDEEGVFYILERAPVVTGEELVDAQPDFDQNG-RPAVSFRF 304 Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334 + GAR+F + T +NIG P A+VLDG V++APVI I G I+GNF +E + LA + Sbjct: 305 NPTGARKFGDYTAENIGNPFAIVLDGEVISAPVIQSHIAGGSGIITGNFNVEDSTNLAVL 364 Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394 LRAG+LP L +EER VG +LG+DSI G A + L++++M++ YG +G+ A+ ++ Sbjct: 365 LRAGALPAGLEFLEERTVGPELGADSIEAGKLACLVAFALVLVYMVLSYGVFGIFANIAL 424 Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454 +NV L LLSL+G+TLTLP IAGIVL IG+AVD+N+LV ERIREE + + ++D+ Sbjct: 425 IINVGLIFGLLSLIGSTLTLPGIAGIVLTIGMAVDANVLVFERIREEMKSAKGAARAIDL 484 Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 G+ +A S I D+NIT + ++L+ G G VRGFAIT+GL I+ S+FTA+ + R + + Sbjct: 485 GYEKAMSAIVDANITTFMTALILYVMGSGPVRGFAITLGLGIITSVFTALFVTRLIAVIW 544 Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574 ++ K++ ++P+ ++ F +GIS + + ++ GLN+GID Sbjct: 545 FERRRPKTVLTG--RYLRIVPEVTSLDFFGRWKLWLGISGVMILVALGSFAVQGLNFGID 602 Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDS 628 FKGG + + + VD+ R + L +GD E ++R+Q Q Sbjct: 603 FKGGTTIRTQSAQEVDIGTYREAIGGLGLGDISITEVFDPTFGPDENVAMLRIQAQDEAE 662 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 V+ V+ + + VP + E VGPK+S ELI+ ++ V ++ A+L+YIW+RF Sbjct: 663 SVTPEVIAAVEAALQQAVPDIQFTSVESVGPKVSGELIQAAMLAVALAIGAVLVYIWMRF 722 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 +W FA+GA+ L+ D+ T+G F+ I+F+L +AA+LT++GYS+ND VVV+DR+R+N+ Sbjct: 723 EWQFAVGAVIALVHDVALTIGVFSELQIQFDLAIIAALLTIVGYSLNDTVVVFDRVRENL 782 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + Y RD+++ SINETL R++ TS+ ++++ + GG VI F M +G++V Sbjct: 783 RKY-KQKPLRDVLNLSINETLSRTMMTSVTTLLALVALYFLGGDVIRGFVFAMIWGVIVG 841 Query: 809 ASSSIFIAAPILLFIYDWR 827 SSIF+A+ +L+++ R Sbjct: 842 TYSSIFVASTVLMWLGIKR 860 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 86/173 (49%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ + I G + +++ +L+Y+ + + F + A LI+++ G +L G Sbjct: 383 GPELGADSIEAGKLACLVAFALVLVYMVLSYGV-FGIFANIALIINVGLIFGLLSLIGST 441 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V+V++R+R+ MK ++ ID + + V ++ Sbjct: 442 LTLPGIAGIVLTIGMAVDANVLVFERIREEMK---SAKGAARAIDLGYEKAMSAIVDANI 498 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F++ L + V G + FAI + GI+ + +++F+ I + ++ R Sbjct: 499 TTFMTALILYVMGSGPVRGFAITLGLGIITSVFTALFVTRLIAVIWFERRRPK 551 >gi|254449196|ref|ZP_05062645.1| SecD export membrane protein [gamma proteobacterium HTCC5015] gi|198261173|gb|EDY85469.1| SecD export membrane protein [gamma proteobacterium HTCC5015] Length = 928 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 260/827 (31%), Positives = 444/827 (53%), Gaps = 43/827 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + LGLDLRGG H +++VD + L+ + E+R+ L++E + Sbjct: 103 NLAPATPTWLRDWGAAPMYLGLDLRGGIHFLMQVDMAGSLKSTLESFEGEIRTLLREEKL 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 R ++ + F ++ +E + D + + Sbjct: 163 RNRGARVYGTQVIVRFTEADTREQARYVLRDRY--------PDMEFIERSVDGNPALIAR 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + + AI Q++ +R R++ +G+SE IQ+ G RI++QLPG QD ++ R++L Sbjct: 215 FTEKALIEEKRSAITQNISALRNRVNALGVSEPVIQQQGLDRIVVQLPGVQDSAKAREIL 274 Query: 207 GTTAKMSFHKVL-------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 G+TA + + + G + + DG+ L+E + ++G ++ A Sbjct: 275 GSTATLEYRMQYGTYQDAVSVENGGRVPSGAKMYFERDGSPVLLERSIIVTGDNI-QNAA 333 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319 + ++P V ++ + GA R + +T+DN+ +P+AVV V++ Q Sbjct: 334 VTYDENNQPAVRVTLNGDGADRMYRITKDNVRRPMAVVYKETKFETRVVDGEEQRVARQE 393 Query: 320 SGNFTI------------------ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 ++ + A LA +LR+G+L + IVEER +G LG+++I Sbjct: 394 ETVISVATVREPLSKQFITTGLQQDEAARLAILLRSGALKAPMEIVEERTIGPSLGAENI 453 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 KG ++V GL L++ FM Y +GL+A+ ++ N+I +A++SLL ATLTLP IAGIV Sbjct: 454 DKGLASVVIGLCLVLGFMAFYYKVFGLIANVALVANIITIVAVMSLLQATLTLPGIAGIV 513 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERI+EE + V ++ G+ +A+STI D+N+T IA V+LF FG Sbjct: 514 LTVGMAVDANVLIFERIKEELNRGAKVQEAIYQGYDKAFSTIADANVTTFIAAVLLFTFG 573 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541 G ++GFAIT+ + I SMFTAI R+++ I +++K++ + FL I Sbjct: 574 TGPIKGFAITLSIGIATSMFTAIMGTRSIVNLIYGNRRLKTLPMGWS---FLKLKETKIP 630 Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601 FMR RF + +S + +I L + GL YGIDF GG + V P +LS +R LE Sbjct: 631 FMRGRFMSLALSAVLVGGAITGLASKGLVYGIDFTGGYLVEVGYQEPAELSDIRDTLEQG 690 Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661 D QNF ++ L+R+Q + G V E + + + E VGP++ Sbjct: 691 GFPDAVVQNFGTARDVLIRIQPREGVESV--EVSEQIMGLLRAENAQVEQRRIEFVGPQV 748 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721 EL G + ++ + IA++IY+ RF+ F+LGA+ L+ D+ TLG FA GIEF+LT Sbjct: 749 GEELRESGGMALLFALIAIVIYLAFRFQLKFSLGAVAALVHDVLITLGVFAWTGIEFDLT 808 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 +AA+L +IGYS+ND +VV+DR+R+N + D+++ SIN+T+ R++ TS+ + Sbjct: 809 VLAALLAVIGYSLNDTIVVFDRIRENFSIMRRGQPI-DIMNTSINQTISRTLMTSVTTML 867 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + + +GG +I SFA+ + G+V+ SS+FIA+ L+F+ + Sbjct: 868 VLTALFYFGGEIIHSFALALLVGVVIGTYSSVFIASTGLVFMKLTKE 914 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 94/263 (35%), Gaps = 4/263 (1%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + V+ + V E + Q+ Sbjct: 355 RMYRITKDNVRRPMAVVYKETKFETRVVDGEEQRVARQEETVISVATVREPLSKQFITTG 414 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + I +GP + E I KG+ V+I +L ++ Sbjct: 415 LQQDEAARLAILLRSGALKAPMEIVEERTIGPSLGAENIDKGLASVVIGLCLVLGFMAFY 474 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +K F L A L+ +I + +L L +A ++ +G +V+ V++++R+++ Sbjct: 475 YKV-FGLIANVALVANIITIVAVMSLLQATLTLPGIAGIVLTVGMAVDANVLIFERIKEE 533 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + ++ I + ++ ++ FI+ + + +G I FAI ++ GI Sbjct: 534 L---NRGAKVQEAIYQGYDKAFSTIADANVTTFIAAVLLFTFGTGPIKGFAITLSIGIAT 590 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + ++I I+ IY R Sbjct: 591 SMFTAIMGTRSIVNLIYGNRRLK 613 >gi|114798705|ref|YP_761073.1| bifunctional preprotein translocase subunit SecD/SecF [Hyphomonas neptunium ATCC 15444] gi|114738879|gb|ABI77004.1| protein-export membrane protein SecD [Hyphomonas neptunium ATCC 15444] Length = 840 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 395/832 (47%), Positives = 560/832 (67%), Gaps = 5/832 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR +++ Y +I IGLL ALPN L + P +PK +I+LGLDLRGGSHLVLEV Sbjct: 1 MRTTRTVLVTYILIILIGLLAALPNVLSPQQIAAMPDWLPKKQITLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + L+ + E R+ + E + + + + D + I ++ + Sbjct: 61 DGPALLADRLKSLAAETRTLMSTETVRGK-VEVTGDTVVARITDPDGRSRILSRLREQVT 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 V ++L+ I++ LS+ I+ AI QS+EI+RQR+DQ+G++E T Sbjct: 120 QVQQAGFTGSVPDILIQPKGDTITLSLSEAGTADRINQAIGQSVEIVRQRVDQVGVAEPT 179 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-DGN 239 IQR+G+ RIL+QLPG QDP+RLR+LLG+TA+MSFH V P GV L D+ G Sbjct: 180 IQRVGADRILVQLPGLQDPTRLRELLGSTAQMSFHMVAPETYGGEVPDGVTLLPDTKTGA 239 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 + + D+V +SG L+ A + FD +T++P+V FD G ++F E+T++N+GKP A+VLD Sbjct: 240 EMPIYDRVALSGDRLSDARSGFDSQTNEPIVTFRFDAAGTKQFAEITKNNVGKPFAIVLD 299 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 G+VLTAPVI I G QI+G+FTIE +L+A+LRAG+LP L ++EER VG DLG+D Sbjct: 300 GKVLTAPVIQGPILGGSGQITGDFTIEETAMLSALLRAGALPAPLTVIEERTVGPDLGAD 359 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 I G + G L+V FM +LY WGL+A F++FLNV LTL +L+ +GATLTLP IAG Sbjct: 360 VISMGLYTGLIGFALVVAFMTLLYRGWGLIASFALFLNVALTLGILTFMGATLTLPGIAG 419 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 I+LGIG+AVD+NIL+NERIREE++K S +LD GF+ AYSTI D+NIT LIAT +LF Sbjct: 420 IILGIGIAVDANILINERIREESKKGVSALAALDRGFNIAYSTILDANITTLIATALLFM 479 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539 FG G V+GFA+TM + +S+FTA+++VR +M +R++++K IDI F L+PD Sbjct: 480 FGSGPVKGFAVTMIVGTGVSLFTAVTVVRVLMTAWVRHRRIKRIDI--EPLFRLVPDGSK 537 Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I FM+AR++G+ SIL SI SI L GLNYGIDF GGIQ+ + +LS +R+ L Sbjct: 538 ISFMKARYFGIATSILLSIASIGLFINPGLNYGIDFTGGIQVEITTPGEANLSQLRAELG 597 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 L +G+++ Q G+ + L+R+Q Q G AQT + V++ ++EI P +++ TE+VGP Sbjct: 598 ELGLGEVALQQIGGKDDVLIRIQRQDGGEAAQTAAVNTVRQTLSEIDPGISVERTEVVGP 657 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+S EL R G++ V ++++AML YIW RF+W FA+GAI TL LD TK LGFF LFG++FN Sbjct: 658 KVSGELARNGMIAVGLASLAMLFYIWWRFEWNFAIGAIVTLALDTTKMLGFFVLFGLDFN 717 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LTA+AA+LT IGYSVNDKVVVYDRMR+N++L R +ID SIN+ L R ++TSM Sbjct: 718 LTAIAALLTFIGYSVNDKVVVYDRMRENIRL-AKRYDLRTVIDTSINQVLTRCIFTSMTT 776 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++++PMA+WGG+ + +FA+PM FG+++A SSIFIAAPILL + + ++ Sbjct: 777 LLAIVPMAIWGGNAVENFALPMVFGVLIATMSSIFIAAPILLLLGNLAQRHQ 828 Score = 107 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++I G+ +I ++ ++ + ++ + L A L L++ TLG G Sbjct: 353 GPDLGADVISMGLYTGLIGFALVVAFMTLLYR-GWGLIASFALFLNVALTLGILTFMGAT 411 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ K +S +D+ N + ++ Sbjct: 412 LTLPGIAGIILGIGIAVDANILINERIREESK---KGVSALAALDRGFNIAYSTILDANI 468 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + ++G + FA+ M +V S+F A ++ + ++ RI Sbjct: 469 TTLIATALLFMFGSGPVKGFAVTM----IVGTGVSLFTAVTVVRVLMTAWVRHRRI 520 >gi|329850434|ref|ZP_08265279.1| protein-export membrane protein SecD [Asticcacaulis biprosthecum C19] gi|328840749|gb|EGF90320.1| protein-export membrane protein SecD [Asticcacaulis biprosthecum C19] Length = 866 Score = 451 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 287/848 (33%), Positives = 475/848 (56%), Gaps = 29/848 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + W V L + +G+L +LPNFLP S+ D P +P ++LGLDL+GGS+L++EV Sbjct: 2 MSLSRWKVGLVLIATLLGILFSLPNFLPSSVKDSLPGFVPAKGLNLGLDLQGGSYLLVEV 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L +++R+ L ++ I + N + + D ++ + Sbjct: 62 DTAALQRERLNNLVEQIRADLTEKKIATPTPIVDGNSVRVRIPDVSQVDDAYKSL-SRFP 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + ++ + + L+++ I A++ S+EI+R+RID++G E + Sbjct: 121 MALPNNPSAMDM-TVNRGPDQTLVVTLTEDGIRATSVRAVDTSIEIVRRRIDELGTKEPS 179 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------- 233 I R G +RI+++ PGE DP L++++GTTA+++FH V + S + + G Sbjct: 180 IARQGVNRIVVEAPGESDPDELKRIIGTTAQLTFHMVDDSVSPEATLAGQLPPGTMALPE 239 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 + G + +SG +L A D +P + +FD GAR F ++TR+NIG+ Sbjct: 240 EGNGGQPLAIRKLAIVSGKNLVDAKTETDENG-QPAIGFAFDSEGARAFGDITRNNIGRR 298 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 A+VLDG++++AP I AI GK QI+G + A +L G+LP L ++R V Sbjct: 299 FAIVLDGKIISAPRIIGAISGGKGQITGVDQV-EASETVKLLNGGALPAPLKFEQQRTVT 357 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATL 412 A+LG+D++ KG A + ++ +++FM YG +G VA ++ +N++L + +S++ ATL Sbjct: 358 AELGADAVQKGAIATLVAVICVIVFMFFSYGFLFGGVAVVALIVNLVLLIGGMSMMQATL 417 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAG++L + +AVD+N+L+ ER+R+E R ++V +LD GFSRA TI D+N+T L Sbjct: 418 TLPGIAGLILTLAMAVDANVLIYERMRDEVRAGRNVISALDAGFSRAMETIIDANVTTLA 477 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 A +++F G G V+GFA+T+ L ++ S+F+A+ + + ++ R + K++ I + Sbjct: 478 AAAIMYFLGAGPVKGFAVTLTLGVITSVFSAVLVTQILLGVWFRVSRPKTMPIADNVKPT 537 Query: 533 LIP------DCIAIQFMRARFWGVGISILFS------ICSICLLFTHGLNYGIDFKGGIQ 580 P F++ G+SIL GL G+DFKGG Sbjct: 538 KWPLIKVLPQKTNFTFVKFAKLAGGVSILAVLASLFLAIYPATPPCGGLACGVDFKGGSA 597 Query: 581 LGVL-ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 L + A + +DL+ +R + S + + Q D ++ + D V + +E VK Sbjct: 598 LDITTAPQVIDLAKLRETMNSQGLKGVQVQGVDDGTAAQMKFETPGNDPVGK---VEQVK 654 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + + P + NTE+VG K+S EL+ GI+ + ++ M+IYIW RF+W F LGA+ Sbjct: 655 IALKKDFPTAAFSNTEVVGAKVSGELLTGGILALFMAIGLMMIYIWFRFEWQFGLGAVVA 714 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L D+T T G FALF +EF+L AVAA+LT+IGYS+ND VVV+DR+R+N++ Y + D Sbjct: 715 LFHDVTLTFGLFALFKLEFDLRAVAAILTIIGYSMNDTVVVFDRLRENLRKY-KKMPLGD 773 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 LID SINETL R++ T + A +++ +AV GG + SF++ M FGI + SS+++AAP+ Sbjct: 774 LIDLSINETLSRTIITGVTAIMALTGLAVLGGETLLSFSVAMIFGIFIGTYSSVYVAAPV 833 Query: 820 LLFIYDWR 827 +L R Sbjct: 834 ILLWGVNR 841 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 80/180 (44%), Gaps = 3/180 (1%) Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + V ++ + ++KG + +++ I ++++++ + + F A+ LI+++ +G Sbjct: 350 FEQQRTVTAELGADAVQKGAIATLVAVICVIVFMFFSYGFLFGGVAVVALIVNLVLLIGG 409 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 ++ L +A ++ + +V+ V++Y+RMR ++ + +D + + Sbjct: 410 MSMMQATLTLPGIAGLILTLAMAVDANVLIYERMRDEVRA---GRNVISALDAGFSRAME 466 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + ++ + M G + FA+ + G++ + S++ + +L + Sbjct: 467 TIIDANVTTLAAAAIMYFLGAGPVKGFAVTLTLGVITSVFSAVLVTQILLGVWFRVSRPK 526 >gi|315122649|ref|YP_004063138.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496051|gb|ADR52650.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 833 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 638/831 (76%), Positives = 742/831 (89%), Gaps = 2/831 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MRNNPWLV LY++ICCIG+L+ALPNFL QS LD FPS +PKNRI+LGLDLRGGSHLVLE Sbjct: 1 MRNNPWLVSLYAVICCIGMLVALPNFLSQSALDAFPSFVPKNRIALGLDLRGGSHLVLEA 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 DE+DF+ G LQM+ +L+SFLKKEG+ + S+RQ++NKI++SF+DS K NI DKV F + Sbjct: 61 DEEDFIGGLLQMHLHDLQSFLKKEGVNILSLRQMKNKISISFSDSISKGNIVDKVRFFFR 120 Query: 121 GVNSKLNVDPKKN-LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 G+ KLN+D K N L+ ++++ISIVL IDQ I+ AIEQSMEI+RQRIDQ+GISE Sbjct: 121 GIAFKLNLDQKNNFLITQNSDQDISIVLIPYKIDQAIARAIEQSMEIVRQRIDQMGISEP 180 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 TIQRLGS+RILIQLPGEQ+PSRLRQLLGTTAKMSFH VL NN KGF G FLRD++GN Sbjct: 181 TIQRLGSNRILIQLPGEQNPSRLRQLLGTTAKMSFHNVLSNNRNKGFSLGASFLRDNNGN 240 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 QYLVEDK++ISG HLNGA A FDPKT++ VVDISFD++GAR FFEVTR+NIG+ LAVVLD Sbjct: 241 QYLVEDKIQISGTHLNGAVARFDPKTNQSVVDISFDDIGARLFFEVTRNNIGRSLAVVLD 300 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 G+VLTAPVINQAIP+GKAQISGNFTIETAG+LA MLRAG+LP+KLNIVEER+VGADLG D Sbjct: 301 GKVLTAPVINQAIPNGKAQISGNFTIETAGVLAVMLRAGALPVKLNIVEERSVGADLGGD 360 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 SIYKGT AI+AGLVLI+LFMIVLYG+WGL+A+FSI LN+ILTLALLSLLGATLTLP IAG Sbjct: 361 SIYKGTYAILAGLVLIILFMIVLYGRWGLLANFSILLNIILTLALLSLLGATLTLPGIAG 420 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVLGIGLAVDSNILVNERIREE+RKN+SVF SLDMGFSRAYSTI DSN+TALI+TV+LFF Sbjct: 421 IVLGIGLAVDSNILVNERIREESRKNKSVFYSLDMGFSRAYSTIVDSNLTALISTVILFF 480 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539 G G VRGFA+TMGLSI++SMFTAISIVRAMMIFI+RYKK+KSI+I L F LIPD Sbjct: 481 CGSGPVRGFAVTMGLSIVVSMFTAISIVRAMMIFIVRYKKIKSINIRSLLGFSLIPDHTT 540 Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I+FM+ARF G+G SI+ SI SI LLFTHGLNYGIDF GGIQ+GV A++PVDLS+VRSNLE Sbjct: 541 IRFMKARFVGIGTSIILSIASISLLFTHGLNYGIDFDGGIQIGVYADKPVDLSIVRSNLE 600 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 SLQIGDISFQ+FDG+KNFLVRL+YQPG S AQ RVLE VKKKITEI+P + I +TEIVGP Sbjct: 601 SLQIGDISFQSFDGDKNFLVRLKYQPGGSPAQARVLEEVKKKITEIIPFAKIPHTEIVGP 660 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 KISRELIRKG++GV++SA+AM IYIWIRF+W+FA+GAITTL+LDITKTLG F+LF +EFN Sbjct: 661 KISRELIRKGVLGVVLSALAMFIYIWIRFEWHFAVGAITTLVLDITKTLGLFSLFDLEFN 720 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LTAVAA+LTLIGYSVNDK+VVYD MRKNM+L ++++SFR+LIDKSINETLGRSVYTSM+A Sbjct: 721 LTAVAAILTLIGYSVNDKIVVYDCMRKNMRL-SSALSFRNLIDKSINETLGRSVYTSMSA 779 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F+SVLPMA+WGGSV+ SFAIPMAFGI +AASSS+FIAAPILLFI DWR KN Sbjct: 780 FLSVLPMAIWGGSVVSSFAIPMAFGIFIAASSSVFIAAPILLFIGDWRFKN 830 >gi|90419392|ref|ZP_01227302.1| protein-export membrane protein, SecD/SecF family [Aurantimonas manganoxydans SI85-9A1] gi|90336329|gb|EAS50070.1| protein-export membrane protein, SecD/SecF family [Aurantimonas manganoxydans SI85-9A1] Length = 855 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 328/835 (39%), Positives = 500/835 (59%), Gaps = 20/835 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + IG+L A PN LPQ LD+ PS P+ ++LGLDL+GGS+++LEVD Sbjct: 5 SRWKTFLIWLTVAIGVLYAAPNVLPQQALDKLPSWFPQQSVTLGLDLQGGSYILLEVDSQ 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 V +Q D+ R L+ E IG + +T+ D + ++ ++ Sbjct: 65 SLVADRVQTLRDDARQALRTERIGYAGLSDSDRTVTIRLRDPEQVAAAREALSPMTDPIS 124 Query: 124 S---KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S + + +++ L+ + S A+ QS+E++R+R+D++G +E Sbjct: 125 SGSVLGGGAVTEVAIAEPQPGVLTLSLTDEGVAYRTSAAVTQSIEVVRRRVDELGTTEPV 184 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------- 232 IQR G RI++Q+PG DP RL+ LL TAK++F V S + G R Sbjct: 185 IQRQGDDRIMVQVPGLGDPQRLKALLNQTAKLTFRLVDVTASAEDVARGSRPPAGSELLY 244 Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 D LV+ ++ +SG +L A A FD ++++PVV+I FD GA+RF VT+ N+G+ Sbjct: 245 TNDPTPAPVLVQRQIMVSGENLTDAQAGFDSQSNEPVVNIRFDTQGAQRFGAVTQQNVGR 304 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 P A+VLD +VL+AP I +AI G+AQISG+FT+++A LA +LRAG+LP LNI+EER V Sbjct: 305 PFAIVLDEKVLSAPNIREAILGGQAQISGSFTVQSANDLAVLLRAGALPATLNIIEERTV 364 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G LG+DSI G A V G +L+V+FM+ YG G++A+ ++ +N++L A+L+++GATL Sbjct: 365 GPGLGADSIAAGETAGVIGALLVVVFMLAAYGFLGIIANIALIVNLVLLFAVLTVIGATL 424 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAGIVL +G+AVDSN+L+ ERIR+E R+ +SV ++D+GF +A +TI D+NIT LI Sbjct: 425 TLPGIAGIVLTLGMAVDSNVLIYERIRDERRQGRSVVQAIDIGFQKALATILDANITTLI 484 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 A VVLFF G G VRGFA+T+ + I+ ++FTA ++ R ++ +R + K + + Sbjct: 485 AAVVLFFLGSGPVRGFAVTLAIGIITTVFTAFTLTRWLVAAWVRRSRPKELPRGFIR--- 541 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDL 591 L+P+ I FM+ R +S+L + S+ LF GLN GIDF GG + V A D+ Sbjct: 542 LVPEVTRIPFMKVRLQAFALSMLLCVASVGGLFAVGLNLGIDFTGGTLIEVQAKNGEADI 601 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 +R L ++ + D Q F L+R+ Q GD + +V+ + Sbjct: 602 GDIRERLGAIGVPDAQVQEFGTPTEALIRIGSQGGD----ASQVAIVESAQEALAADYDF 657 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + TE+VGP +S EL ++GV+ S A+LIY+WIRF+W FALGAI + D+ TLGF Sbjct: 658 RRTEVVGPTVSGELAFAAVIGVLASLFAILIYVWIRFEWQFALGAIIATVNDVFLTLGFL 717 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 + +EF+L +VAA+LT++GYS+ND VV+YD++R+N++ + + L+D S NE L R Sbjct: 718 VVTQLEFSLASVAAILTIVGYSLNDTVVIYDKVRENLRRF-KKMPIGQLLDLSDNEMLAR 776 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS +++ + V+GG VI SF M FG+ + SSIF+AAP L+F Sbjct: 777 TTMTSATTLLALAALFVFGGEVIRSFVASMLFGVAIGTFSSIFVAAPALIFFKLR 831 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 72/173 (41%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I G +I A+ +++++ + + + A LI+++ + G Sbjct: 365 GPGLGADSIAAGETAGVIGALLVVVFMLAAYGFL-GIIANIALIVNLVLLFAVLTVIGAT 423 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R + S ID + L + ++ Sbjct: 424 LTLPGIAGIVLTLGMAVDSNVLIYERIRDERRQ---GRSVVQAIDIGFQKALATILDANI 480 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 I+ + + G + FA+ +A GI+ ++ + ++ Sbjct: 481 TTLIAAVVLFFLGSGPVRGFAVTLAIGIITTVFTAFTLTRWLVAAWVRRSRPK 533 >gi|163868673|ref|YP_001609882.1| bifunctional preprotein translocase subunit SecD/SecF [Bartonella tribocorum CIP 105476] gi|161018329|emb|CAK01887.1| protein-export membrane protein [Bartonella tribocorum CIP 105476] Length = 837 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 398/834 (47%), Positives = 557/834 (66%), Gaps = 8/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR WL LY I + +ALPN + +P R++LGLDL+GGS L+LEV Sbjct: 1 MRTPGWLTTLYCFILLSSIYVALPNLFSHEQVKNS-KFLPDTRVALGLDLQGGSSLLLEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L + +R+ L+++ I S+R I++ + + +D+ E + + Sbjct: 60 DSKTLKRDQLHIVLSNVRNTLREKQIRTSSVRIIEDSVVVLISDASQTEKARAALKTLIT 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 ++S + N+ ++ + + + L++ I +S+AIEQS+EIIR+RIDQ+G+SE Sbjct: 120 PIHSSF-GTTEHNITISAQNETLRVTLTEAGIKDRVSNAIEQSLEIIRRRIDQVGVSEPA 178 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238 IQ++G+ RI++QLPG QDP +LR LLGTTAKMSFH V N GV L + Sbjct: 179 IQKVGNDRIMVQLPGLQDPKQLRDLLGTTAKMSFHLVPSNVDPNNPPIGVSILPGYTDET 238 Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y + D++ + G L A A F + ++ + D GA+ F ++TR NI +P A+V Sbjct: 239 QRYAIYDQIALDGNVLKDARAGFDPQIPGRSIISFTLDSAGAKIFADITRQNINRPFAIV 298 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +VLTAP IN IP+G+ QI+GNF + A LAA+LRAGSLP L ++EER VG +LG Sbjct: 299 LDNKVLTAPTINSVIPNGQGQITGNFDAKEASTLAALLRAGSLPAPLTVIEERTVGPNLG 358 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +D+I G + G +L+ +F+ +LY WGL+A+ ++ L+ ILT A LSLLGATLTLP I Sbjct: 359 ADAIQMGLYTGIIGFMLVAIFIFLLYRIWGLIANIALALHTILTFAALSLLGATLTLPGI 418 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE+RK S F +LD GF +A++TI D+N+TA+IATV+L Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGVSAFAALDRGFKQAFATIVDANVTAIIATVLL 478 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F+FG G VRGFA+TM L I+ISMFT I+IVR +MI+I+R K+K++ I S F +IP Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTNITIVRIIMIWIVRKWKIKNLHI--HSAFSIIPQN 536 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 FM+ARF G+G+SI+ SI S+ L F GLN+GIDF GG Q+ + P DL+ +RS Sbjct: 537 TTFHFMKARFIGIGVSIILSIASVFLFFKPGLNFGIDFIGGSQMSITTKVPADLATLRSK 596 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L L IG+I+ QN D E L+R+Q Q G QT ++ VK + I P +T E+V Sbjct: 597 LSVLNIGEITLQNIDNENTVLIRMQKQSGSEAQQTIAIDKVKTAVQNIYPDTTFDQIEVV 656 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPKIS EL VI++AIAM +YIW+RF+W+FA+GAI TLILD TK +GFFALF + Sbjct: 657 GPKISGELATAAFTAVILAAIAMTLYIWLRFEWFFAIGAIVTLILDTTKMIGFFALFQFD 716 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY + R+LID SIN+ L R +TS Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KKMPLRELIDLSINQVLVRCFFTSA 775 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +++LPMA+WGGS + +FA+PM FGI++A SSSIFIAAPILL + +W + + Sbjct: 776 TTILAMLPMAIWGGSAVHNFALPMVFGIIIATSSSIFIAAPILLLLGNWWRERS 829 >gi|240850338|ref|YP_002971731.1| protein-export membrane protein [Bartonella grahamii as4aup] gi|240267461|gb|ACS51049.1| protein-export membrane protein [Bartonella grahamii as4aup] Length = 837 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 395/834 (47%), Positives = 552/834 (66%), Gaps = 8/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR WL LY I + +ALPN + +P R++LGLDL+GGS L+LEV Sbjct: 1 MRTPGWLTTLYCFILLSSIYVALPNLFSYEQVKNS-KFLPDTRVALGLDLQGGSSLLLEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L + +R+ L+++ I S+R +++ I +D E + + Sbjct: 60 DSKTLKRDQLHIVLSSVRNVLREKQIRTSSVRIVEDSIIALISDPSQTEKALSALKTLIT 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 ++S + N+ ++ + + + L++ I +S+AIEQS+EIIR+RIDQ+G+SE Sbjct: 120 PIHSSF-GTTEHNITISAQNETLRVTLTEAGIKDRVSNAIEQSLEIIRRRIDQVGVSEPA 178 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQ++G+ RI++QLPG QDP +LR LLGTTAKMSFH V N GV L Sbjct: 179 IQKVGNDRIMVQLPGLQDPKQLRDLLGTTAKMSFHLVPSNVDPNNPPIGVSILPGYTDAT 238 Query: 241 --YLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + D++ + G L A A F + ++ + D GA+ F ++TR NI +P A+V Sbjct: 239 QHYAIYDQIALDGNVLKDARAGFDPQIPGRSIISFTLDSAGAKIFADITRQNINRPFAIV 298 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +VLTAP IN IP+G+ QI+GNF + A LAA+LRAGSLP L ++EER VG +LG Sbjct: 299 LDNKVLTAPTINSVIPNGQGQITGNFDPKEASTLAALLRAGSLPAPLTVIEERTVGPNLG 358 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +D+I G + G +L+ +F+ +LY WGL+A+ ++ L+ ILT A LSLLGATLTLP I Sbjct: 359 ADAIQMGLYTGIIGFILVAIFIFLLYRIWGLIANIALALHTILTFAALSLLGATLTLPGI 418 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE+RK S F +LD GF A++TI D+N+TA+IATV+L Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGVSAFAALDRGFKHAFATIVDANVTAIIATVLL 478 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F+FG G VRGFA+TM L I+ISMFT I+IVR +MI+I+R K+K + I S F ++P+ Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTNITIVRIIMIWIVRKWKIKKLHI--HSAFNIMPEN 536 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 FM+ARF G+G+SI+ S+ S+ L F GLN+GIDF GG Q+ + P DL+ +RS Sbjct: 537 TTFHFMKARFIGIGVSIVLSMASVFLFFKPGLNFGIDFIGGSQMSITTKAPADLATLRSK 596 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L IG+++ QN D E L+R+Q Q G QT ++ VK + I P +T E+V Sbjct: 597 LSTLNIGEVTLQNIDNESTVLIRMQKQSGSEAQQTIAIDKVKTAVQNIYPDTTFDQIEVV 656 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPKIS EL VI++AIAM +YIW+RF+W+FA+GAI TLILD TK +GFFALF + Sbjct: 657 GPKISGELATAAFTAVILAAIAMSLYIWLRFEWFFAIGAIITLILDTTKMIGFFALFQFD 716 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY + R+LID SIN+ L R +TS Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KKMPLRELIDLSINQVLVRCFFTSA 775 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +++LPMA+WGGS + +FA+PM FGI++A SSSIFIAAPILL + +W + Sbjct: 776 TTILAMLPMAIWGGSAVHNFALPMVFGIIIATSSSIFIAAPILLLLGNWWRERN 829 >gi|254450884|ref|ZP_05064321.1| protein-export membrane protein SecD [Octadecabacter antarcticus 238] gi|198265290|gb|EDY89560.1| protein-export membrane protein SecD [Octadecabacter antarcticus 238] Length = 877 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 296/862 (34%), Positives = 466/862 (54%), Gaps = 39/862 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSA 38 ++ + W ++ G+L+A+PN ++ +PS Sbjct: 2 LKIDLWKRTAIWLVVAFGILVAMPNGFYSKVEMSNDAEASIVKSGTTPELEAAAADWPSF 61 Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV---FSMRQIQ 95 +P N ++LGLDLRGG+ L+ EV + ++ E+R L + V + Sbjct: 62 LPDNLVNLGLDLRGGAQLLAEVKVEQVYEQRMRGMWPEVRDVLAAQRDVVGFVTDVSITS 121 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 ++ + ++ + + Q S +V + + ++ I LSQ Sbjct: 122 GELRVRISEPAGMDRALELARGLAQQGGSVTSVGETDIEVSAVSATDLVITLSQAEQVAT 181 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 + Q++EI+R+RID+ G E +IQR G++RILIQ+PG ++ ++GTTA++ FH Sbjct: 182 DDRTVRQALEIVRRRIDETGTREPSIQRQGANRILIQVPGVGSAQEVKDIIGTTAQLGFH 241 Query: 216 KVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 V+ + + G D +G Y+VE ++G L + F+ +P V Sbjct: 242 PVVGSTADPDARAGAGNMVIPSLDVEGQYYIVERSPVVTGEELVDSQPTFNENN-QPAVT 300 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 F+ GAR+F + TRDNIG P A+VLD V++AP I I G I+G FT+E L Sbjct: 301 FRFNPSGARKFGDYTRDNIGSPFAIVLDNEVVSAPTIQSHISGGLGIITGQFTLEETTNL 360 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +LRAG+LP +LN ++E+ VG DLG DSI GT A + L++++M++ YG G+ A+ Sbjct: 361 AVLLRAGALPAELNFLQEQTVGPDLGQDSINAGTIACIVAFALVLIYMVLSYGLLGVFAN 420 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ +NV L A+LSL+G TLTLP IAGIVL IG+AVD+N+L+ ERIREE+R + + Sbjct: 421 VALLVNVALIFAMLSLIGGTLTLPGIAGIVLTIGMAVDANVLIFERIREESRTAKGPARA 480 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 +++G+ +A S I D+NIT LI +LF G G VRGFAIT+GL I+ S+FTAI + R ++ Sbjct: 481 IELGYEKALSAIIDANITTLITAGILFAMGAGPVRGFAITLGLGIITSVFTAIFVTRLLV 540 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571 + K+ K I L+ A F + +G+S + + + GLNY Sbjct: 541 VIWFERKRPKKILAG--KYLRLVKSETAFDFFKRGKIWLGLSGIMVVVAFISFLAQGLNY 598 Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQP 625 GIDFKGG L + + +D+ R + L IG+ + V + Q Sbjct: 599 GIDFKGGTTLRTDSTQVIDVGAYRDAVLVLDIGEVTVTEVFDPTFGPDQNVATVAISAQD 658 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 G+ + V+ + I P T E VGP +S ELI+ I+ V+ + A+LIYIW Sbjct: 659 GEESVTNDTISAVQDALRTIDPDMTFPAVESVGPTVSGELIQSAILAVVFAIGAVLIYIW 718 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 +RF+W FALGA+ LI D+ T+G F+ I F+L +AA+LT++GYS+ND VVV+DR+R Sbjct: 719 MRFEWQFALGAVVALIHDVVLTIGIFSELNIRFDLAIIAALLTIVGYSLNDTVVVFDRVR 778 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 +N++ Y + +++++ SINETL R+ TS ++++ + V GG VI F M +G+ Sbjct: 779 ENLRKY-KAKDLKEVLNLSINETLSRTFMTSFTTLLALISLYVLGGDVIRGFVFAMIWGV 837 Query: 806 VVAASSSIFIAAPILLFIYDWR 827 +V SSIF+A+ LL + R Sbjct: 838 IVGTYSSIFVASTTLLVLGVKR 859 Score = 149 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 83/182 (45%), Gaps = 4/182 (2%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + VGP + ++ I G + I++ +LIY+ + + + A L++++ Sbjct: 374 NFLQEQTVGPDLGQDSINAGTIACIVAFALVLIYMVLSYGLL-GVFANVALLVNVALIFA 432 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 +L G L +A ++ IG +V+ V++++R+R+ + T+ I+ + L Sbjct: 433 MLSLIGGTLTLPGIAGIVLTIGMAVDANVLIFERIREESR---TAKGPARAIELGYEKAL 489 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + ++ I+ + G + FAI + GI+ + ++IF+ +++ ++ + Sbjct: 490 SAIIDANITTLITAGILFAMGAGPVRGFAITLGLGIITSVFTAIFVTRLLVVIWFERKRP 549 Query: 830 NA 831 Sbjct: 550 KK 551 >gi|304311334|ref|YP_003810932.1| Protein-export membrane protein [gamma proteobacterium HdN1] gi|301797067|emb|CBL45280.1| Protein-export membrane protein [gamma proteobacterium HdN1] Length = 841 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 329/829 (39%), Positives = 513/829 (61%), Gaps = 9/829 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + +YS++ IGLL A+PNFL + + P + +N+I LGLDLRGGSHL+LEV Sbjct: 1 MRQFRARIWIYSIVILIGLLSAVPNFLTPELASKLPEGLAQNKIVLGLDLRGGSHLLLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + ++ + S L+K GI + Q+ ++ ++ E A + Sbjct: 61 ETPALSADRMYQNAEVISSELRKAGISHLRPAKTQDSAKITLKNASDFEKAAGIARSKAK 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + V +++V + I + A E+S++++R+R+D+ G+ + T Sbjct: 121 Q-------NGVIQFTVEQQGTSMALVPTPEMILGLKQDAAERSIDVLRRRLDETGVVDPT 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 I R G+ IL+QLPG +P+ +R+LLG TA+++FH V+ + G L G+ Sbjct: 174 ITRQGADSILVQLPGVSNPAHIRELLGKTARLTFHLVVEEGERSRG--GAMTLPSQQGDS 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 +E + + G HL A ++ T +P+V+ D +GA+RF ++T+++IG+ LAVVLDG Sbjct: 232 VRLEQRTLLDGAHLADARLGYNQNTGEPLVNFHLDAIGAKRFAKITKESIGRALAVVLDG 291 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 RV+TAPVI I G +I+G FT+ A LA +LRAG+LP L ++EER VG DLGSD+ Sbjct: 292 RVITAPVIRGVIGGGSGEITGGFTVTEAKDLALLLRAGALPAPLKVIEERTVGPDLGSDA 351 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G + G+ L+ +F++ LYG+WG++AD ++ LN+ L++ +LS GATLTLP IAG+ Sbjct: 352 IQMGVTTGLLGMALVFIFIVTLYGRWGVIADVALALNIGLSVGVLSAFGATLTLPGIAGL 411 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 +L IG+AVD+NIL+NERIREE K + +L GF RAY+TI DSN+T LIA +LF F Sbjct: 412 ILSIGMAVDANILINERIREEVNKTHNALDALAAGFDRAYATIIDSNLTTLIAISLLFLF 471 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G G ++GFA+ M + +++S+FTAIS+ R +M + +R SI + L I I Sbjct: 472 GSGPIKGFAVAMAVGLVVSLFTAISVTRLLMEWRVRRGNHTSISMKGLLPLERIQPDKPI 531 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 +F+ AR G+ S + S SI L+F GL+ GIDF+GG + + N + + +R+ + Sbjct: 532 KFLNARVAGLTFSAVLSAASIALMFYPGLSKGIDFQGGNVIELRTNPQISVEKLRAAFQQ 591 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 + +I+ Q F +F+VR + A V++ +K+ + + P + EIVGPK Sbjct: 592 AGLKEIAIQEFGAPGSFMVRSPLVSSEDAASGGVVDQIKEVVLKEDPHAEFPRVEIVGPK 651 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 +S ++ ++++ M +Y+WIRF+++FA+ A+ TL+LD+TK LGFFAL G+EFNL Sbjct: 652 VSGSFADTSVLALLLAGGGMFVYLWIRFEFHFAIAALATLVLDMTKMLGFFALTGVEFNL 711 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 +AVAA+L LIGYSVNDKVVV+DR+R+ ++ +I ++L+D SI TL R+++TS+ F Sbjct: 712 SAVAALLALIGYSVNDKVVVFDRIREFLRKGQRNIDLKELMDLSITSTLTRTIFTSVTTF 771 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + +LPM + GG+ + SFA+PM FGIV+ SSSIFIAAPIL + + R + Sbjct: 772 LCLLPMGIAGGAAVSSFALPMLFGIVLGTSSSIFIAAPILYLLGERRIR 820 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G+ ++ + I+I + + + A L L+I ++G + FG Sbjct: 344 GPDLGSDAIQMGVTTGLLGMALVFIFIVTLYG-RWGVIADVALALNIGLSVGVLSAFGAT 402 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + + + D + + + +++ Sbjct: 403 LTLPGIAGLILSIGMAVDANILINERIREEV---NKTHNALDALAAGFDRAYATIIDSNL 459 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I++ + ++G I FA+ MA G+VV S+F A + + +WR + Sbjct: 460 TTLIAISLLFLFGSGPIKGFAVAMAVGLVV----SLFTAISVTRLLMEWRVRRG 509 >gi|149913917|ref|ZP_01902449.1| protein-export membrane protein SecD [Roseobacter sp. AzwK-3b] gi|149812201|gb|EDM72032.1| protein-export membrane protein SecD [Roseobacter sp. AzwK-3b] Length = 877 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 300/824 (36%), Positives = 470/824 (57%), Gaps = 19/824 (2%) Query: 18 GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL 77 + P +P +P ++LGLDLRGG+HL+ EV D ++ E+ Sbjct: 41 AIEAGSPTPQLVEDAGLWPDFLPSGLVNLGLDLRGGAHLLAEVQVADVYQSRIESMWPEI 100 Query: 78 RSFLKKEGIGVFSMR---QIQNKITLSFADSRF-KENIADKVTLFLQGVNSKLNVDPKKN 133 R L++E V +R ++ + D E A V + V S Sbjct: 101 RDLLREERDRVGPIRLQPTQAAELRVRLMDRPDEVEYAAGLVRGLARPVTSLTGAGASDI 160 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + T EI + LS+ + Q++EIIR+RID++G E TIQR G+ RILIQ+ Sbjct: 161 EVSTE-GDEIVVRLSEAEQRATDDRTVRQALEIIRRRIDEVGPREPTIQRQGADRILIQV 219 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEI 249 PG + L++++GTTA+++F V+ G D +G Y++E + Sbjct: 220 PGVGSAAELKEIIGTTAQLTFQPVVSRTQNADDTLGAGNEILPSMDQEGTFYILERAPVV 279 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309 +G L A +FD +P V FD GAR+F + T +NIG P A+VLDG V++APVI Sbjct: 280 TGDELVDAQPDFDQNG-RPAVSFRFDPTGARKFGDYTAENIGSPFAIVLDGEVISAPVIQ 338 Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369 IP G I+GNFT+E + LA +LRAG+LP L +EER +G +LG+DSI G A + Sbjct: 339 SHIPGGSGIITGNFTVEESTSLAVLLRAGALPAGLEFLEERTIGPELGADSIEAGQIACI 398 Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429 V++++FM + YG +G+ A+ ++ +NV L LLSL+GATLTLP IAGIVL IG+AVD Sbjct: 399 VAFVMVLVFMFMAYGTFGIFANIALIINVGLIFGLLSLIGATLTLPGIAGIVLTIGMAVD 458 Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 +N+LV ERIREE + + ++++G+ +A S I D+NIT I ++L+ G G VRGFA Sbjct: 459 ANVLVFERIREEMKSAKGPARAIELGYEKALSAITDANITTFITALILYAMGSGPVRGFA 518 Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549 IT+GL I+ S+FTA+ + R ++I K+ KS+ L+P F + Sbjct: 519 ITLGLGIITSVFTALFVTRLIVIIWFERKRPKSV--LQGRSIRLVPQITNWDFFKRWRLS 576 Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD---- 605 +G+S + + + GLNYGIDF+GG + A +PVD+ + R ++ LQ+GD Sbjct: 577 LGLSAVLIVIAGGSFLLQGLNYGIDFRGGTTIRTEAPQPVDIGLYRDAIQPLQLGDVSIT 636 Query: 606 --ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663 + + ++R+Q Q G+ + V+ V+ + + P + E VGPK+S Sbjct: 637 EVFDPTFAEDQNVAMIRVQAQEGEEAVSSDVIAQVETALQAVSPDLKFTSVESVGPKVSG 696 Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723 ELI ++ V ++ A+LIYIW+RF+W FALGA+ L+ D+ T+G F+ I+F+L + Sbjct: 697 ELITTAMIAVALAIGAVLIYIWLRFEWQFALGAVIALVHDVVLTIGIFSELQIQFDLAII 756 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 AA+LT++GYS+ND VVV+DR+R+N++ Y ++++ SINETL R++ TS+ +++ Sbjct: 757 AALLTIVGYSLNDTVVVFDRVRENLRKYKKK-PLAEVLNISINETLSRTLITSVTTLLAL 815 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + + GG VI F M +G++V SS+F+A+ +LL++ R Sbjct: 816 IALFILGGDVIRGFVFAMIWGVIVGTYSSVFVASTMLLWLGVKR 859 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 89/176 (50%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ + I G + I++ + +L+++++ + F + A LI+++ G +L G Sbjct: 380 TIGPELGADSIEAGQIACIVAFVMVLVFMFMAYG-TFGIFANIALIINVGLIFGLLSLIG 438 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V+V++R+R+ MK ++ I+ + L Sbjct: 439 ATLTLPGIAGIVLTIGMAVDANVLVFERIREEMK---SAKGPARAIELGYEKALSAITDA 495 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ FI+ L + G + FAI + GI+ + +++F+ I++ ++ + + Sbjct: 496 NITTFITALILYAMGSGPVRGFAITLGLGIITSVFTALFVTRLIVIIWFERKRPKS 551 >gi|304321623|ref|YP_003855266.1| hypothetical protein PB2503_10364 [Parvularcula bermudensis HTCC2503] gi|303300525|gb|ADM10124.1| hypothetical protein PB2503_10364 [Parvularcula bermudensis HTCC2503] Length = 875 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 286/860 (33%), Positives = 483/860 (56%), Gaps = 37/860 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 ++ N W + + +G+ +LPNF + D P +P+ ++LGLDL+GG++L+L V Sbjct: 2 LQFNRWQIGSVIALIVLGVYFSLPNFFAE---DERPGFLPETTVTLGLDLQGGTYLLLGV 58 Query: 61 DEDDFVNGFLQMYSDELRSFLKK-----EGIGVFSMRQIQNKITLSFADSRFKENIADKV 115 D D + + ++ L+ G S+ + +++ D + D + Sbjct: 59 DTDGVLVDRITSIQSDVAGRLRNAPGGRIRFGRISVDRENLSLSVPITDPADVDRAMDSL 118 Query: 116 TL---FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172 L G + + ++ + I + L+ A+ S+E+IR+RID Sbjct: 119 RRLSGTLGGGVAGIAGAGRELRISRGEGTVILVALTDEAQSFYADEAVSDSIEVIRRRID 178 Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL---PNNSKKGFMFG 229 +G +E +IQR G+ R+++Q+PG D +R++L ++SFH V + Sbjct: 179 SLGTTEPSIQRQGADRLVVQVPGNSDSEGIRRVLDAQGQLSFHMVDGTADPTAPTPPRRL 238 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 L + G ++ + +++G + A+A+ + V+ FD GARRF VTR+N Sbjct: 239 TLPLAEFPGQSIVIFENPDVTGDMVTSASASPNADGPGFQVNFGFDNRGARRFGNVTREN 298 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 IG+ A+VLD V++AP I AI G +I+G+F+ E A LA ++R+G+LP +L +E+ Sbjct: 299 IGRQFAIVLDDTVISAPRIQSAITGGSGRITGSFSPEEAQELAVLIRSGALPAELTTIEQ 358 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R VGADLG+DS+ GT A++ G + +V+F++++Y + G+ AD ++F NV+L LSLLG Sbjct: 359 RTVGADLGADSVRAGTIALILGFIGVVIFIVLVYLRMGIYADIALFANVLLMAGALSLLG 418 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 ATLTLP IAGIVL IG+AVD+N+L+ ERI+EE + +++ G+ A+S IFD+N+T Sbjct: 419 ATLTLPGIAGIVLTIGMAVDANVLIFERIKEEISSGKGAVAAVEAGYRNAWSAIFDANLT 478 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDIN 526 LIA ++F G G VRGFA+T+G+ ++ S+FTA + R + R +K K+ Sbjct: 479 TLIAAFLMFMLGAGPVRGFAVTLGIGVVTSVFTAFVLTRLFIGAHVLGQRRRKGKASSTR 538 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 LIPD I F R +S + + SI + T GLN+G+DF+GG+ + V Sbjct: 539 FGGGLKLIPDDTHIHFASMRNIAAILSAVAIVVSIGAVMTKGLNFGVDFRGGVTVEVGPA 598 Query: 587 RPV-----DLSVVRSNLESLQIGDISFQNFDGE-------------KNFLVRLQYQPGDS 628 DL+ VR+ + +L +GD+ + G ++ + P Sbjct: 599 EGQTFANEDLTQVRAAVGTLDLGDVQAKTIGGVAGAPDGIAVTVPLQDAETGGEIDPEAE 658 Query: 629 VAQTRVLEMVKKKITE-IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 Q V +++ +TE + + + T+IVGP +S ELI++G ++++ ML+YIW R Sbjct: 659 ARQVEVANQLRQTLTEVLGAEISFRRTDIVGPTVSGELIQRGAGALLLAIGLMLVYIWFR 718 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 F+W F+LGAI L+ D+ T+G F++ +F L+ +AA+LT+IGYS+ND VVV+DR+R+N Sbjct: 719 FEWQFSLGAIIALVHDVILTIGIFSITQFDFTLSVIAALLTIIGYSMNDTVVVFDRIREN 778 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 ++ + S +++D SIN+TL R++ TS+ ++++ + ++GG V+ F+ + +GI+V Sbjct: 779 LRKF-KSKPLTEVVDLSINQTLSRTIMTSVTTLVALVSLFLFGGEVLRGFSFALIWGILV 837 Query: 808 AASSSIFIAAPILLFIYDWR 827 SS+FIA+P LL R Sbjct: 838 GTYSSVFIASPTLLRTGVKR 857 >gi|149204170|ref|ZP_01881138.1| protein-export membrane protein SecD [Roseovarius sp. TM1035] gi|149142612|gb|EDM30657.1| protein-export membrane protein SecD [Roseovarius sp. TM1035] Length = 878 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 310/858 (36%), Positives = 478/858 (55%), Gaps = 40/858 (4%) Query: 6 WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43 W + +GL++ALPN L +P MP + Sbjct: 7 WKRLCIWGTVALGLMLALPNGFYGKVERHNDAVVAVEAGADPASVADDLALWPGWMPSSL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSF 102 ++LGLDLRGG+HL+ EV +D ++ E+R L++E V +R Q ++ L Sbjct: 67 VNLGLDLRGGAHLLAEVKVEDVYQARVEGMWPEVRDLLREERDSVGPIRLQQTDEPELRV 126 Query: 103 ADSRFKE---NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 E A V + V L ++ VTT +I I LS+ Sbjct: 127 RLVERPEMATEAAALVRGLARPVTDVLTGVGGSDIEVTTDGADIIIRLSEAEQRATDDRT 186 Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219 + QS+EIIR+RID++G E TIQR G+ RILIQ+PG + L+ L+GTTA+++F V+ Sbjct: 187 VRQSLEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSAAELKALIGTTAQLTFQPVIS 246 Query: 220 NNSKKGFMF----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 + V D G Y++E ++G L A +FD +P V F+ Sbjct: 247 RAASADAPAGAGNEVLPSLDEAGVYYILERAPVVTGEELVDAQPDFDQNG-RPAVSFRFN 305 Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335 GAR+F + T +NIG P A+VLDG V++APVI I G I+GNF +E + LA +L Sbjct: 306 PTGARKFGDYTAENIGNPFAIVLDGEVISAPVIQSHIAGGSGIITGNFNVEDSTQLAVLL 365 Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395 RAG+LP L +EER VG +LG+DSI G A + L++++MIV YG +G+ A+ ++ Sbjct: 366 RAGALPAGLEFLEERTVGPELGADSIEAGKLACLVAFALVLVYMIVSYGIFGIFANIALI 425 Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455 +NV L LLSL+G+TLTLP IAGIVL IG+AVD+N+LV ERIREE + + ++++G Sbjct: 426 VNVGLIFGLLSLIGSTLTLPGIAGIVLTIGMAVDANVLVFERIREEMKSAKGAARAIELG 485 Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 + +A S I D+NIT + ++L+ G G VRGFAIT+GL I+ S+FTA+ + R + + Sbjct: 486 YEKAMSAIVDANITTFMTALILYVMGSGPVRGFAITLGLGIVTSVFTALFVTRLITVMWF 545 Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575 K+ K++ F L+P+ + F +GIS + + + GLN+GIDF Sbjct: 546 ERKRPKTVLAG--RGFRLVPEITSWDFFSRWKLWLGISGVMILVAFGSFAVQGLNFGIDF 603 Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSV 629 KGG + L+ PVD+ R+ + +GD E ++R+Q Q Sbjct: 604 KGGTTIRTLSAEPVDIGAYRAATNDMGLGDVSITEVFDPTFGPEENVAMLRIQAQDETES 663 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 + V+ + + VP + E VGPK+S ELI+ ++ V ++ A+L+YIW+RF+ Sbjct: 664 VTPETIAAVEAALQQAVPDIQFTSVESVGPKVSGELIKTAVLAVALAIGAVLVYIWMRFE 723 Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 W FA+GA+ L+ D+ T+G F+ I+F+L +AA+LTL+GYS+ND VVV+DR+R+N++ Sbjct: 724 WQFAVGAVIALVHDVALTIGVFSELQIQFDLAIIAALLTLVGYSLNDTVVVFDRVRENLR 783 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809 Y R++++ SINETL R++ TS+ +++L + V GG VI F M +G++V Sbjct: 784 KY-KQRPLREVLNLSINETLSRTMVTSLTTLLALLALYVLGGDVIRGFVFAMIWGVIVGT 842 Query: 810 SSSIFIAAPILLFIYDWR 827 SSIF+A+ +L+++ R Sbjct: 843 YSSIFVASTVLMWLGIKR 860 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 86/173 (49%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ + I G + +++ +L+Y+ + + F + A LI+++ G +L G Sbjct: 383 GPELGADSIEAGKLACLVAFALVLVYMIVSYGI-FGIFANIALIVNVGLIFGLLSLIGST 441 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V+V++R+R+ MK ++ I+ + + V ++ Sbjct: 442 LTLPGIAGIVLTIGMAVDANVLVFERIREEMK---SAKGAARAIELGYEKAMSAIVDANI 498 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F++ L + V G + FAI + GIV + +++F+ I + ++ + Sbjct: 499 TTFMTALILYVMGSGPVRGFAITLGLGIVTSVFTALFVTRLITVMWFERKRPK 551 >gi|121602716|ref|YP_989164.1| bifunctional preprotein translocase subunit SecD/SecF [Bartonella bacilliformis KC583] gi|120614893|gb|ABM45494.1| protein-export membrane protein SecD/SecF [Bartonella bacilliformis KC583] Length = 834 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 393/835 (47%), Positives = 558/835 (66%), Gaps = 8/835 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR WL LY +I G+ +ALPN Q ++ +P +++LGLDL+GGS L+LEV Sbjct: 1 MRTPRWLTTLYCLILLSGIYVALPNLFSQEQIENS-KFLPNTQVTLGLDLQGGSSLLLEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D LQ + +R+ L+++ I S+R I+N + +D + + + Sbjct: 60 DAKTLKRDQLQTVLNNVRAKLREKKIRTSSIRIIENNVVAVLSDLTKNQEAITALKTLIT 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +N+ V + + I + L++ I IS+AIEQS+EIIR+RIDQ+G++E Sbjct: 120 PINNSFGVTTNNISIH-AQNETIHVTLTEAAIKDRISNAIEQSLEIIRRRIDQVGVTEPA 178 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR--DSDG 238 IQ++G+ RI++QLPG QDP +LR LLGTTAKM+FH V N GV L +++ Sbjct: 179 IQKVGTDRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPANVDLNNPPAGVSILPGYNNEN 238 Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y + D+V + G L A A F + ++ + + +G+R F E+TR NI +P A+V Sbjct: 239 QRYAIYDQVALDGNVLKDARAGFDPQIPGRSIISFTMNSIGSRIFAEITRQNINRPFAIV 298 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +VLTAP+IN IP+G+ QI+GNF + A LAA+LRAGSLP L ++EER VG +LG Sbjct: 299 LDSKVLTAPIINGVIPNGQGQITGNFDPKEASTLAALLRAGSLPAPLTVIEERTVGPNLG 358 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +D+I G + G +L+ +F+ LYG WG++AD ++ L+ ILT A LSLLGATLTLP I Sbjct: 359 ADAIKMGLYTGIIGFILVAIFIFFLYGIWGIIADIALALHTILTFAALSLLGATLTLPGI 418 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE+RK S F +LD GF +A++TI D+N+TA+IAT++L Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGLSAFAALDRGFKQAFTTIIDANVTAVIATILL 478 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F FG G VRGFA+TM L ++ISMFT I++VR +MI+IIR K+K + I F IP Sbjct: 479 FLFGTGPVRGFAVTMLLGVVISMFTDITLVRMIMIWIIRKWKIKILHI--QPFFNFIPQN 536 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+G+S + S+ SI L F GLN+GIDF GG Q+ + + P +L+++RS Sbjct: 537 TTFRFMNARFIGIGVSFILSLSSIFLFFKPGLNFGIDFIGGSQMSITTSTPANLAILRSQ 596 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L IG+++ QN D E L+R+ Q GD + QT ++ VK + +I P + E+V Sbjct: 597 LSTLNIGEVTLQNIDNENAVLIRIPKQNGDEIQQTIAIDKVKTTVKDIYPDAAFDQIEVV 656 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+S EL GI VI++AIAM +YIW RF+W+FA GAI TLILD TK +GFFAL + Sbjct: 657 GPKVSGELAIAGITAVILAAIAMSLYIWWRFEWFFAAGAIITLILDTTKMVGFFALCQFD 716 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY T R++ID SIN+ L R ++TS Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLYRTK-PLREIIDLSINQVLVRCIFTSA 775 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++LPMA+WGGS + +FAIPM G+++A SSSIFIA PILL + +W + + Sbjct: 776 TTVLAMLPMAIWGGSTVQNFAIPMVAGVLIATSSSIFIATPILLLLGNWWHNHNK 830 Score = 102 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G+ II I + I+I+ + + + A L L T +L G Sbjct: 354 GPNLGADAIKMGLYTGIIGFILVAIFIFFLYGI-WGIIADIALALHTILTFAALSLLGAT 412 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + +S +D+ + + ++ Sbjct: 413 LTLPGIAGIILGIGIAVDANILINERIREESR---KGLSAFAALDRGFKQAFTTIIDANV 469 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 A I+ + + ++G + FA+ M G+V S+F ++ I W + +I Sbjct: 470 TAVIATILLFLFGTGPVRGFAVTMLLGVV----ISMFTDITLVRMIMIWIIRKWKI 521 >gi|49475818|ref|YP_033859.1| bifunctional preprotein translocase subunit SecD/SecF [Bartonella henselae str. Houston-1] gi|49238626|emb|CAF27870.1| Protein-export membrane protein [Bartonella henselae str. Houston-1] Length = 837 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 392/834 (47%), Positives = 555/834 (66%), Gaps = 8/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR WL+ LY I + +ALPN Q + + R++LGLDL+GGS L+LEV Sbjct: 1 MRTPGWLITLYCFILLSSIYVALPNLFSQEQVKNS-KFLTDTRVTLGLDLQGGSSLLLEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L M +R+ L+++ I S+R +++ + +D E + + Sbjct: 60 DTKTLKRDQLHMVLGNVRNILREKQIRTSSVRVLEDSVIALISDPTESEKAVSALKTLIT 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 ++S + + I ++L++ I + IS+AIEQS+EIIR+RIDQ+G++E Sbjct: 120 PIHSSFGTTADDITISAQDK-TIRVMLTEAGIKERISNAIEQSLEIIRRRIDQVGVTEPA 178 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238 IQ++G+ RI++QLPG QDP +LR LLGTTAKM+FH V N GV L + Sbjct: 179 IQKVGTDRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPSNVDINNLPTGVSILPGYTDET 238 Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y + D++ + G L A A F + ++ + + G++ F ++TR NI +P A+V Sbjct: 239 QRYAIYDQIALDGNVLKDARAGFDPQMPGRSIISFTMNSTGSKIFADITRQNINRPFAIV 298 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +VLTAP IN IP+G+ QI+GNF + A LAA+LRAGSLP L ++EER VG +LG Sbjct: 299 LDNKVLTAPTINSVIPNGQGQITGNFDPKEASTLAALLRAGSLPAPLTVIEERTVGPNLG 358 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +D+I G + G V + +F+ +LYG WG++A+ ++ L+ ILT A LSLLGATLTLP I Sbjct: 359 ADAIQMGLYTGIIGFVFVTVFIFLLYGVWGIIANIALALHTILTFAALSLLGATLTLPGI 418 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE+RK S F +LD GF +A++TI D+N+TA+IAT++L Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGISAFAALDRGFKQAFATIIDANVTAIIATILL 478 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++R K+K++ + S F +IP Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTNITIVRIMMIWVVRKWKIKAL--HLHSVFNIIPRN 536 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 FM+ARF G+G+SI+ S+ SI L F GLN+GIDF GG Q+ + P +L+ +RS Sbjct: 537 TTFHFMKARFIGIGVSIVLSLASIFLFFKPGLNFGIDFIGGSQMSITTKAPANLTTLRSQ 596 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L IG+++ QN D L+R+Q Q G + QT ++ VK + I P +T E+V Sbjct: 597 LSTLNIGEVTLQNMDNANTVLIRIQKQSGGEIQQTTAIDKVKTTVHNIYPNATFDQIEVV 656 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPKIS EL VI++AIAM +YIW+RF+W+FA+GAI TLILD TK +GFFALF + Sbjct: 657 GPKISGELATAAFTAVILAAIAMSLYIWLRFEWFFAVGAIVTLILDTTKMIGFFALFQFD 716 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY +S R+LID SIN+ L R ++TS Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KKMSLRELIDLSINQVLIRCLFTSA 775 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +++LPMA+WGGS + +FA PM FGI++A SSSIFIAAPILL + +W K Sbjct: 776 TTVLAMLPMALWGGSAVYNFAFPMVFGIIIATSSSIFIAAPILLLLGNWWRKRN 829 >gi|319898748|ref|YP_004158841.1| protein-export membrane protein [Bartonella clarridgeiae 73] gi|319402712|emb|CBI76259.1| protein-export membrane protein [Bartonella clarridgeiae 73] Length = 834 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 393/835 (47%), Positives = 552/835 (66%), Gaps = 8/835 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR WL LY I + +ALPN Q + +P ++LGLDL+GGS L+LE+ Sbjct: 1 MRIPRWLATLYCFILLSSIYVALPNLFSQEQIKNS-KLLPNTHVTLGLDLQGGSSLLLEI 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ + +R+ L++ I S+R I + I + +D++ + + + Sbjct: 60 DTKTLKRDHLRTVLNNVRTKLREAKIHTSSIRIIDDSIAVVVSDTKQNKKAVTTLETLII 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +N+ + E I + L+ I+ +S A+EQS+EIIR+RIDQ+G++E Sbjct: 120 PINNSFGTTASDIAVSNQNE-TIRVTLTDAGINDRVSKAVEQSLEIIRRRIDQVGVTEPA 178 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQ++G++RI++QLPG QDP +LR LLGTTAKM+FH V N GV L Sbjct: 179 IQKVGTNRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPHNVDINNPPIGVSILPGYTDAN 238 Query: 241 --YLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + D++ + G L A A F + ++ + + +G++ F E+TR +I +P A+V Sbjct: 239 QHYAIYDQIALDGNVLKDARAGFDPQIPGRSIISFTMNSIGSKIFAEITRQHINRPFAIV 298 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +VLTAPVIN IP+G+ QI+GNF + A LAA+LRAG+LP L ++EER VG +LG Sbjct: 299 LDNKVLTAPVINSVIPNGQGQITGNFDPKEASTLAALLRAGALPTPLTVIEERTVGPNLG 358 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +DSI G + G +L+ +F+ +LYG WG++AD +I L+ IL + LSLLGATLTLP I Sbjct: 359 ADSIKMGLYTGIIGFILVTVFIFLLYGIWGIIADIAIALHTILIFSALSLLGATLTLPGI 418 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE++KN S F +LD GF +A+STI D+N+TA+IATV+L Sbjct: 419 AGIILGIGIAVDANILINERIREESQKNISAFAALDRGFKQAFSTILDANVTAVIATVLL 478 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++ K+K + S F IP Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTEITIVRIMMIWVVNKWKIKKL--KLQSFFNFIPKN 536 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+GISIL S+ SI L F GLN+GIDF GG Q+ + P +L+ +RSN Sbjct: 537 TTFRFMNARFIGIGISILLSLFSIFLFFKPGLNFGIDFVGGSQISIRTKTPANLATLRSN 596 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L IG+++ QN D E L+R+Q Q G + T ++ VKK + I P +T TE+V Sbjct: 597 LSALNIGEVTLQNIDNENTVLIRIQQQSGGEMQHTIAIDKVKKTVQSIYPDTTFDQTEVV 656 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPKIS EL G VI++ IAM +YIW RF+W+FA+GAI TLILD TK +GFFALF + Sbjct: 657 GPKISSELATAGFTAVILATIAMSLYIWWRFEWFFAIGAIITLILDTTKMVGFFALFQFD 716 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY + R++ID SIN+ R ++TS Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLYKKT-PLREIIDLSINQVFIRCIFTSA 775 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++LPMA+WGGS + +FA P+ FGI++A SSSIFIAAPILL + +W K + Sbjct: 776 TTILAMLPMALWGGSAVNNFAWPIVFGIIIATSSSIFIAAPILLLLNNWWYKKNK 830 >gi|116251815|ref|YP_767653.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium leguminosarum bv. viciae 3841] gi|115256463|emb|CAK07547.1| putative transmembrane export SecD/F family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 846 Score = 426 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 305/834 (36%), Positives = 472/834 (56%), Gaps = 19/834 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W +L + ++IA PN L ++ P + +R+ LGLDL+GGSH+VL+V Sbjct: 2 LHFSRWKTLLIWLAAFAAIVIAAPNLLTEAQRSSLPDWLRHDRVVLGLDLQGGSHIVLKV 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + D V L+ +R+ L+ GI + +T+ D+ + D + Sbjct: 62 ERSDIVRDRLEEVVANVRNALRGAGIRYTGLTGNDQTVTVRITDAAQTQAAVDLLKPLTT 121 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + + ++S+ +S I ++ A +S++I+ +RI +G Sbjct: 122 AGGHSGPEVALQQG----DQGQLSLQISDAGITAAVASARTRSLDIVGRRIAGLGNDNFL 177 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234 ++ G+ RI++Q+ G D RL+ +L AK+SFH + + S + + G Sbjct: 178 VRPDGADRIVVQVLGSVDAERLKNILNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYS 237 Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 D YLV+ I+G ++ DP+T + D G +R + T NIGK Sbjct: 238 LDDPPVPYLVDRTAFITGGNMVDIEPVVDPQTQDTSIAYDLDAEGTQRLAQATGQNIGKH 297 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+V DG+V+++P I+ AI G+ QIS NF+ + LA MLRAG+LP L VEER+V Sbjct: 298 LAIVFDGQVMSSPAIDAAITGGEGQISANFSEDGVRDLAIMLRAGALPATLTSVEERSVS 357 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 G+DSI+ G A + +VL+ MI LY GL+A S+FLN+IL +A+LSL GATLT Sbjct: 358 PRFGADSIFNGLVAGLVAVVLVAALMIALYRILGLIAVASLFLNLILIVAVLSLAGATLT 417 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGIVL +G+AVDSN+L+ ERIREE + S ++ GFSRA++TI D+N+T IA Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTTHSFAEAVGRGFSRAFATIVDANVTIFIA 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 ++LFF G ++RGFA+T+ + IL ++FTA ++ R+++ +R + + + + L+ Sbjct: 478 AIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWVRKRHPRHLPKSVLTH--- 534 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592 + + I+FM R + S + S+ ++ T GL+ GIDF GG + V A + D++ Sbjct: 535 LFEHANIRFMGIRRYVFTASAVISLIAMAAFATVGLHLGIDFTGGSLIEVTAKQGNADIA 594 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 + + L L +G+IS + G N +R+ Q G A+ +V+ ++ E + Sbjct: 595 DLNARLNDLNLGEISVERTGGPANARIRIASQGGGENAEQSAATLVRGELQE---DYDFR 651 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E+VGP IS EL +GV+ + A+LIYIWIRF+W FA+GAI + D+ LG F Sbjct: 652 RVEVVGPAISGELTMMATLGVLAALAAILIYIWIRFEWQFAVGAIVATLHDVIIMLGLFV 711 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L GIEFNLT+VAAVLT++GYS+ND VVVYDRMR+N+K Y + LID SIN+TL R+ Sbjct: 712 LTGIEFNLTSVAAVLTIVGYSLNDTVVVYDRMRENLKRY-KKMPLPILIDASINQTLSRT 770 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 V T+ I++L + ++GG VI SF M FG+ + SSI+IAAP+L+ Sbjct: 771 VLTAATTLIALLALFLFGGEVIRSFTFAMLFGVALGTFSSIYIAAPVLIVFRLR 824 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 67/147 (45%), Gaps = 4/147 (2%) Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 + ++ L A+ +L L++ + +L G L +A ++ ++G +V+ V++Y+R Sbjct: 383 MIALYRI-LGLIAVASLFLNLILIVAVLSLAGATLTLPGIAGIVLIVGMAVDSNVLIYER 441 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 +R+ T+ SF + + + + V ++ FI+ + + G I FA+ +A Sbjct: 442 IREE---EKTTHSFAEAVGRGFSRAFATIVDANVTIFIAAIILFFLGSESIRGFAVTLAV 498 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKN 830 GI+ ++ + I+ R Sbjct: 499 GILTTVFTAFTLTRSIVAVWVRKRHPR 525 >gi|319404073|emb|CBI77661.1| protein-export membrane protein [Bartonella rochalimae ATCC BAA-1498] Length = 836 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 389/835 (46%), Positives = 553/835 (66%), Gaps = 8/835 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR WL LY I + +ALPN Q + +P ++LGLDL+GGS L+LEV Sbjct: 1 MRTPAWLATLYCFILLSSIYVALPNLFSQEQIKNS-KFLPNTHVTLGLDLQGGSSLLLEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L +R L++ I S+R I++ I + +D+ + + + Sbjct: 60 DTKTLKRDQLHTVLSNVRKKLREAKIQTSSVRIIEDNIVVVLSDTTQNKKAITTLETLIM 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +++ + E I + L+++ I+ +S AIEQS+EIIR+RIDQ+G++E Sbjct: 120 PIHNSFGTTASDIAINNQNE-TIRVTLTESGINDRVSKAIEQSLEIIRRRIDQVGVTEPA 178 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238 IQ++G++RI++QLPG QDP +LR LLGTTAKM+FH V N GV L Sbjct: 179 IQKVGTNRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPSNIDINNPPVGVSILSGYTDVN 238 Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y + D++ + G L A A F + ++ + + +G++ F ++TR +I +P A+V Sbjct: 239 QKYAIYDQIALDGNVLKDARAGFDPQIPGRSIISFTMNSIGSKIFADITRQHINRPFAIV 298 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +VLTAPVIN IP+G+ QI+GNF + A LAA+LRAG+LP L ++EER VG +LG Sbjct: 299 LDNKVLTAPVINSVIPNGQGQITGNFDSKEASTLAALLRAGALPAPLTVIEERTVGPNLG 358 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +DSI G + G +L+ +F+ +LYG WG++AD +I L+ IL + LSLLGATLTLP I Sbjct: 359 ADSIKMGLYTGIIGFILVTVFIFLLYGIWGIIADIAIALHTILIFSALSLLGATLTLPGI 418 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE++K S F +LD GF +A++TI D+N+TA+IATV+L Sbjct: 419 AGIILGIGIAVDANILINERIREESQKGISAFAALDRGFKQAFATILDANVTAVIATVLL 478 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++ K+K + S F IP Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTEITIVRIMMIWVVNKWKIKKLQF--QSVFNFIPKN 536 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+GISI+ S+ SI L F GLN+GIDF GG Q+ + P +L+++RSN Sbjct: 537 TTFRFMNARFIGIGISIILSLSSIFLFFKPGLNFGIDFVGGSQMTITTKTPANLAILRSN 596 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L IG+++ QN D E L+R+Q Q G + T ++ VKK + I P +T TE+V Sbjct: 597 LSALNIGEVTLQNIDNENTILIRIQQQSGGEIQHTIAIDKVKKTVQSIYPDTTFDQTEVV 656 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPKIS EL GI+ VI++ +AM +YIW RF+W+FA+GAI TLILDITK +GFF LF + Sbjct: 657 GPKISGELATAGIIAVILATVAMSLYIWWRFEWFFAIGAIVTLILDITKMVGFFVLFQFD 716 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY R++ID SIN+ R ++TS Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KQTPLREIIDLSINQVFVRCIFTST 775 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++LPMA+WGG+ + +FA P+ FGI++A SSSIFIAAPILL + +W K + Sbjct: 776 TTILAMLPMALWGGNTVNNFAWPIVFGIIIATSSSIFIAAPILLLLNNWCYKKNK 830 >gi|319407084|emb|CBI80721.1| protein-export membrane protein [Bartonella sp. 1-1C] Length = 841 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 387/829 (46%), Positives = 549/829 (66%), Gaps = 8/829 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR WL LY I + +ALPN Q + +P ++LGLDL+GGS L+LEV Sbjct: 1 MRTPAWLATLYCFILLSSIYVALPNLFSQEQIKNS-KFLPNTHVTLGLDLQGGSSLLLEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + L +R L++ I S+R I++ I + +D+ + + + Sbjct: 60 DTKTLKHDQLHTVLSNVRKKLREAKIHTSSVRIIEDNIVVVLSDTTQNKKAITTLETLIM 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +++ + E I + L+++ I+ +S AIEQS+EIIR+RIDQ+G++E Sbjct: 120 PIHNSFGTTASDIAINNQNE-TIRVTLTESGINDRVSKAIEQSLEIIRRRIDQVGVTEPA 178 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238 IQ++G++RI+IQLPG QDP +LR LLGTTAKM+FH V N GV L Sbjct: 179 IQKVGTNRIMIQLPGLQDPKQLRDLLGTTAKMTFHLVPSNIDINNPPVGVSILSGYTDVN 238 Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y + D++ + G L A + F + ++ + + +G++ F ++TR ++ +P A+V Sbjct: 239 QKYAIYDQIALDGNVLKDARSGFDPQIPGRSIISFTMNSIGSKIFADITRQHLNRPFAIV 298 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +VLTAPVIN IP+G+ QI+GNF + A LAA+LRAG+LP L ++EER VG +LG Sbjct: 299 LDNKVLTAPVINSVIPNGQGQITGNFDSKEASTLAALLRAGALPAPLTVIEERTVGPNLG 358 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +DSI G + G +L+ +F+ +LYG WG++AD +I L+ IL + LSLLGATLTLP I Sbjct: 359 ADSIKMGLYTGIIGFILVTVFIFLLYGIWGIIADIAIALHTILIFSALSLLGATLTLPGI 418 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE++K S F +LD GF +A++TI D+N+TA+IATV+L Sbjct: 419 AGIILGIGIAVDANILINERIREESQKGISAFAALDRGFKQAFATILDANVTAVIATVLL 478 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++ K+K + S F IP Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTEITIVRIMMIWVVNKWKIKKLQF--QSFFNFIPKN 536 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 FM ARF G+GISI+ S+ SI L F GLN+GIDF GG Q+ + P +L+++RSN Sbjct: 537 TTFPFMNARFIGIGISIILSLSSIFLFFKPGLNFGIDFVGGSQMTITTKTPANLAILRSN 596 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L IG+++ QN D E L+R Q Q G V ++ VKK + I P +T TE+V Sbjct: 597 LSALNIGEVTLQNIDNENTILLRTQQQSGGEVQHAIAIDKVKKTVQSIYPDTTFDQTEVV 656 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPKIS EL GI+ VI++ +AM +YIW RF+W+FA+GAI TLILDITK +GFF LF + Sbjct: 657 GPKISGELATAGIIAVILATVAMSLYIWWRFEWFFAIGAIVTLILDITKMVGFFVLFQFD 716 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY R++ID SIN+ R ++TS Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KQKPLREIIDLSINQVFVRCIFTST 775 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +++LPMA+WGG+ + +FA P+ FGI++A SSSIFIAAPILL + +W Sbjct: 776 TTILAMLPMALWGGNTVNNFAWPIVFGIIIATSSSIFIAAPILLLLNNW 824 >gi|49474423|ref|YP_032465.1| bifunctional preprotein translocase subunit SecD/SecF [Bartonella quintana str. Toulouse] gi|49239927|emb|CAF26328.1| Protein-export membrane protein [Bartonella quintana str. Toulouse] Length = 837 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 386/834 (46%), Positives = 554/834 (66%), Gaps = 8/834 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR WL LY I + IALPN Q + + R++LGLDL+GGS L+LEV Sbjct: 1 MRTPGWLTTLYCFILLSSIYIALPNLFSQEQVKNS-RFLTDTRVTLGLDLQGGSSLLLEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + L M +R+ L+++ I S+R +++ + +D + E + + Sbjct: 60 EAKTLKRDQLHMLLSNVRNTLREKQIRTSSIRVLEDSVIALISDPKESEKALSALKTLIT 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +++ + + + I+L++ + + IS+AIEQS+EIIR+RIDQ+G++E Sbjct: 120 PIHNSFGSKANDITIS-AQDNTLRIMLTEAGMKERISNAIEQSLEIIRRRIDQVGVTEPA 178 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238 IQ++G+ RI++QLPG QDP +LR LLGTTAKM+FH V N GV L Sbjct: 179 IQKVGTDRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPSNVDINNLPAGVSILPGYTDKA 238 Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y + D++ + G L A A F + ++ + + +G++ F ++TR NI +P A+V Sbjct: 239 QRYAIYDQIALDGNVLKDARAGFDPQMPGRSIISFTMNSIGSKIFADITRQNINRPFAIV 298 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +VLTAP+IN IP+G+ QI+GNF + A LAA+LRAGSLP L ++EER VG +LG Sbjct: 299 LDNKVLTAPIINSVIPNGQGQITGNFDPKEASTLAALLRAGSLPAPLTVIEERTVGPNLG 358 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +D+I G + G VL+ +F+ +LYG WG++A+ ++ L+ ILT A LSLLGATLTLP I Sbjct: 359 ADAIQMGLYTGIIGFVLVTVFIFLLYGIWGIIANIALALHTILTFAALSLLGATLTLPGI 418 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE+RK S F +LD GF +A++TI D+NITA+IAT++L Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGISAFAALDRGFKQAFATIVDANITAIIATILL 478 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++R K+K++ S F + P Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTNITIVRIMMIWVVRKWKIKTLHF--HSIFNITPQN 536 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM+ARF G+ +SI+ S+ S+ L GLN+GIDF GG Q+ + P +L+ +RS Sbjct: 537 TTFRFMKARFIGISVSIVLSLVSVFLFLKPGLNFGIDFIGGSQMSITTKAPANLATLRSK 596 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L IG+++ QN D L+R+Q Q G + QT ++ VK + I P +T E+V Sbjct: 597 LSTLNIGEVTLQNIDNANTVLIRIQKQSGGATQQTAAIDKVKTAVQNIYPNTTFDQIEVV 656 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPKIS EL VI++AIAM +YIW+RF+W+FA+GAI TLILD TK +GFFA F + Sbjct: 657 GPKISGELATAAFTAVILAAIAMSLYIWLRFEWFFAVGAIVTLILDTTKMIGFFAFFQFD 716 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY ++ R+LID SIN+ L R ++TS Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KNMPLRELIDFSINQVLIRCLFTSA 775 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +++LPMA+WGGS + +FA+PM FGI++A SSSIFIAAPILL + +W K Sbjct: 776 TTVLAMLPMAIWGGSAVHNFAVPMVFGIIIATSSSIFIAAPILLLLGNWWRKRN 829 >gi|319408789|emb|CBI82446.1| protein-export membrane protein [Bartonella schoenbuchensis R1] Length = 833 Score = 419 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 393/835 (47%), Positives = 554/835 (66%), Gaps = 8/835 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR WL+ LY +I G+ +ALPN Q + + +P ++LGLDL+GGS L+LEV Sbjct: 1 MRTPGWLITLYCLILLSGIYVALPNLFSQEQI-KTSKFLPNTHVTLGLDLQGGSSLLLEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ D +R+ L+++ I ++R I++ I + +D + + + Sbjct: 60 DVKTLKRDQLRTILDNVRTKLREQKIRTSNIRIIEDDIIIVISDPTQNQKAVTALETLIM 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + + + T E I + L+++ I I + +EQS+EIIR+RIDQIG++E Sbjct: 120 PIQNSFGTTTNDITISTQNEN-IRVTLTESGIKDRIKNTVEQSLEIIRRRIDQIGVAEPA 178 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238 IQ++G++RI++QLPG QDP +LR LLGTTAKM+FH V N GV L + Sbjct: 179 IQKVGTNRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPSNVDVNTPPIGVSILPGYTDEN 238 Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + D++ + G L A A F + ++ + + +G++ F E+TR NI +P A+V Sbjct: 239 QHFAIYDQIALDGNVLKDARAGFDPQMPGRAIISFTMNSIGSKIFAEITRKNINRPFAIV 298 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +VLTAPVIN IP+G+ QI+GNF I+ A LAA+LRAGSLP L ++EER VG DLG Sbjct: 299 LDNKVLTAPVINGIIPNGQGQITGNFDIKEASTLAALLRAGSLPAPLIVIEERTVGPDLG 358 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +D+I G + G VL+ +FM +LYG WG++ D ++ L+ ILTLA LSLLGATLTLP I Sbjct: 359 ADAIKMGLYTGIIGFVLVAIFMFLLYGIWGIITDIALALHTILTLAALSLLGATLTLPGI 418 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE+RK S F +LD GF +A++TI D+N+TA+IAT++L Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGVSAFAALDRGFKQAFATIVDANVTAIIATILL 478 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F+FG G VRGFAITM L I+ISMFT I+IVR +M++++R K+K++ I P F L Sbjct: 479 FWFGNGPVRGFAITMLLGIIISMFTDITIVRIIMVWVVRKWKIKTLRIQPFFDFTL--YN 536 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 FM+ARF G+GISI+ S+ SI L F GLN+GIDF GG Q+ + P +L+ +RS Sbjct: 537 TTFHFMKARFIGIGISIILSLASIFLFFKPGLNFGIDFIGGSQMSITTKAPANLATLRST 596 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L IG++ QN D L+R+Q Q GD + QT ++ VK I I P + EIV Sbjct: 597 LSALNIGEVKLQNIDNAHTVLIRIQKQNGDEIQQTVAMDKVKAAIQNIYPDTIFDQIEIV 656 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPKIS E + ++ VI++AIAM +YIW RF+W+FA+GAI TLILDI K +G FALF + Sbjct: 657 GPKISEEFVTASVIAVILAAIAMSLYIWWRFEWFFAVGAIVTLILDIAKMIGLFALFQFD 716 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT++GYS+NDKVVVY+RMR+NM+LY + LID SIN+ R V+TS Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYNRMRENMRLY-KKMPMYQLIDLSINQVFTRCVFTST 775 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++LPMA+WGGS + +FA+PM FGI++A SSIFIAAPILL + +W + Sbjct: 776 TTILAMLPMALWGGSAVYNFALPMVFGIIIATLSSIFIAAPILLLLSNWGISKIK 830 Score = 95.9 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G+ II + + I++++ + + + L L TL +L G Sbjct: 354 GPDLGADAIKMGLYTGIIGFVLVAIFMFLLYGI-WGIITDIALALHTILTLAALSLLGAT 412 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ +++ +R+R+ + +S +D+ + V ++ Sbjct: 413 LTLPGIAGIILGIGIAVDANILINERIREESR---KGVSAFAALDRGFKQAFATIVDANV 469 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 A I+ + + +G + FAI M GI+ S+F I+ I W + +I Sbjct: 470 TAIIATILLFWFGNGPVRGFAITMLLGII----ISMFTDITIVRIIMVWVVRKWKI 521 >gi|241204424|ref|YP_002975520.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858314|gb|ACS55981.1| protein-export membrane protein SecD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 846 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 299/834 (35%), Positives = 469/834 (56%), Gaps = 19/834 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W +L + ++IA PN L ++ P + +R+ LGLDL+GGSH+VL+V Sbjct: 2 LHFSRWKTLLIWLAAFAAIVIAAPNLLTEAQRSSLPDWLRHDRVVLGLDLQGGSHIVLKV 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + D V L+ +R+ L+ I + +T+ D + D + Sbjct: 62 ERSDIVRDRLEELVANVRNALRGASIRYTGLTGNDQTVTVRITDPAQTQAAVDLLK---- 117 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + + + L E ++S+ +S I ++ A +S++I+ +RI G Sbjct: 118 PLTTAGGHSGSEVALQQGEEGQLSLQISDAGITADVASARTRSLDIVGRRIAGFGYDNFL 177 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234 + G+ RI++Q+ G D RL+ +L AK+SFH + + S + + G Sbjct: 178 VHPDGADRIVVQVLGSVDAERLKNILNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYS 237 Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 D YLV+ + ++ DP+T + + D G +R + T NIGK Sbjct: 238 LDDPPIPYLVDRTAFANSGNMVDIEPVIDPQTQETSIAYRLDAEGTQRLAQATGQNIGKH 297 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+V D +V+++PVI+ AI G+ +IS NF+ + LA MLRAG+LP L VEER+V Sbjct: 298 LAIVFDDQVMSSPVIDAAITGGEGRISANFSEDGVRDLAIMLRAGALPATLTSVEERSVS 357 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 G+DSI+ G A + +VL+ MI LY G++A S+FLN+IL +A+LSL GATLT Sbjct: 358 PRFGADSIFNGIVAGLVAVVLVAALMIALYRILGIIAVASLFLNLILIVAVLSLAGATLT 417 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGIVL +G+AVDSN+L+ ERIREE + S ++ GFSRA++TI D+N+T IA Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTTHSFAEAVGRGFSRAFATIVDANVTIFIA 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 ++LFF G ++RGFA+T+ + IL ++FTA ++ R+++ + + + + + L+ Sbjct: 478 AIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLSARHPRHLPKSVLTH--- 534 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592 + + I+FM R + S + S+ ++ T GL+ G+DF GG + V A + +++ Sbjct: 535 LFEHANIRFMGIRRYVFTASAVISLIAMAAFATVGLHLGVDFTGGSLIEVTAKQANAEIA 594 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 + S L L +GD+S + G N +R+ Q G A+ +V+ ++ E + Sbjct: 595 DIHSRLNDLNLGDVSVERTGGPANARIRIASQGGGENAEQSAATLVRGELQE---DYDFR 651 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E+VGP IS EL +GV+ + A+LIYIWIRF+W FA+GAI + D+ LG F Sbjct: 652 RVEVVGPAISGELTMMATLGVLAALAAILIYIWIRFEWQFAVGAIVATLHDVIIMLGLFV 711 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L GIEFNLT++AAVLT++GYS+ND VVVYDRMR+N+K Y + LID SIN+TL R+ Sbjct: 712 LTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRY-KKMPLPILIDASINQTLSRT 770 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 V T+ I++L + ++GG VI SF M FG+ + SSI+IAAP+L+ Sbjct: 771 VLTAATTLIALLALFLFGGEVIRSFTFAMLFGVALGTFSSIYIAAPVLIVFRLR 824 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 80/175 (45%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 V P+ + I GIV +++ + + + ++ + A+ +L L++ + +L G Sbjct: 355 SVSPRFGADSIFNGIVAGLVAVVLVAALMIALYRIL-GIIAVASLFLNLILIVAVLSLAG 413 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ ++G +V+ V++Y+R+R+ T+ SF + + + + V Sbjct: 414 ATLTLPGIAGIVLIVGMAVDSNVLIYERIREE---EKTTHSFAEAVGRGFSRAFATIVDA 470 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + G I FA+ +A GI+ ++ + I+ R Sbjct: 471 NVTIFIAAIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLSARHPR 525 >gi|319405517|emb|CBI79136.1| protein-export membrane protein [Bartonella sp. AR 15-3] Length = 841 Score = 417 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 386/829 (46%), Positives = 549/829 (66%), Gaps = 8/829 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR WL +Y I G+ +ALPN Q + +P ++LGLDL+GGS L+LEV Sbjct: 1 MRTPAWLATIYCFILLSGIYVALPNLFSQEQIKNS-KFLPNTHVTLGLDLQGGSSLLLEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D L+ +R+ L++ I S+R I++ I + D+ + + + Sbjct: 60 DTKTLKRDQLRTVLSNVRTKLREAKIHTSSIRIIEDSIVVVLYDTTQNKKTVTTLETLIT 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +++ + E I + L+++ I+ +S AIEQS+EIIR+RIDQ+G++E Sbjct: 120 PIHNSFGTTTSDIAINNQNE-TIRVTLTESGINDRVSKAIEQSLEIIRRRIDQVGVTEPA 178 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238 IQ++G++RI++QLPG QDP +LR L+GTTAKM+FH V N GV L Sbjct: 179 IQKVGTNRIMVQLPGLQDPKQLRDLIGTTAKMTFHLVASNVDINNPPIGVSILSGYTDAN 238 Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y + D++ + G L A A F + ++ + + +G++ F E+TR +I +P A+V Sbjct: 239 QKYAIYDQIALDGNVLKDARAGFDPQIPGRSIISFTMNSIGSKIFAEITRQHINRPFAIV 298 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +VLTAPVIN IP+G+ QI+GNF + A LAA+LRAG+LP L ++EER VG +LG Sbjct: 299 LDNKVLTAPVINSVIPNGQGQITGNFDSKEASTLAALLRAGALPAPLTVIEERTVGPNLG 358 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +DSI G + G +L+ +F+ +LYG WG++AD +I L+ IL + LSLLGATLTLP I Sbjct: 359 ADSIKMGLYTGIIGFILVTVFIFLLYGIWGIIADIAIALHAILIFSALSLLGATLTLPGI 418 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+LGIG+AVD+NIL+NERIREE++K+ S F +LD GF +A++TI D+N+TA+IATV+L Sbjct: 419 AGIILGIGIAVDANILINERIREESQKDISAFAALDRGFKQAFATILDANVTAVIATVLL 478 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++ K+K + S F IP Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTEITIVRIMMIWVVNKWKIKKL--KLQSFFNFIPKN 536 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 +FM ARF G+ ISI+ S+ SI L F GLN+GIDF GG Q+ + P +L+ +RS+ Sbjct: 537 TTFRFMNARFIGIAISIVLSLFSIFLFFKPGLNFGIDFVGGSQMTITTKTPANLATLRSH 596 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L +L IG+++ QN D E L+R+Q Q G + T ++ VKK + I P + TEIV Sbjct: 597 LSALNIGEVTLQNIDNENTILIRIQQQSGGEIQHTIAIDKVKKTLQSIYPDTIFDQTEIV 656 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPKIS EL G+ VI++ AM +YIW RF+W+FA+GAI TLILDITK +GFF LF + Sbjct: 657 GPKISGELATAGVTAVILAIAAMSLYIWWRFEWFFAIGAIVTLILDITKMIGFFVLFQFD 716 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY R++ID SIN+ R ++TS Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KQTPLREIIDLSINQVFIRCIFTSA 775 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +++LPMA+WGGS + +FA P+ FGI++A SSSIFIAAPILL + +W Sbjct: 776 TTVLAMLPMALWGGSAVNNFAWPIVFGIIIATSSSIFIAAPILLLLNNW 824 >gi|162147519|ref|YP_001601980.1| bifunctional preprotein translocase subunit SecD/SecF [Gluconacetobacter diazotrophicus PAl 5] gi|161786096|emb|CAP55678.1| putative protein-export membrane protein secD [Gluconacetobacter diazotrophicus PAl 5] Length = 836 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 315/841 (37%), Positives = 485/841 (57%), Gaps = 23/841 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + + +C +G+L+ LPN L Q +P +I LGLDLRGGS+L+++V Sbjct: 2 MYYSRLKLASVVAVCLLGMLLCLPNALRQPAPA-----VPWRQIHLGLDLRGGSYLLMQV 56 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + LQ +D R L G+G + T++F E+ AD L+ Sbjct: 57 DMNSIRADRLQTLADGTRQALLGAGLGYRDIATDAQAGTVTFTPREPAESDAD-----LK 111 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + + + + + I+I LS + Q + A+ QS+EI+R+RID G + Sbjct: 112 TLRAMPKAVADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRRRIDATGAVDPE 171 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---FLRDSD 237 I R G RI+++LPG DP +++LLGTTAKM+FH V N + ++ Sbjct: 172 ITRQGEDRIIVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAP 231 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + V D V++ G L A A D ++ + V+ +FD GAR F T+ N+G+ A+V Sbjct: 232 DQKLPVRDHVDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIV 291 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +V+ APVI AI G QI+G F ++A LA +LRAG+LP L+++E+R++G LG Sbjct: 292 LDNKVVQAPVIRTAITGGNGQITGGFDAQSATDLALLLRAGALPAPLSVIEQRSIGPSLG 351 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +DSI G ++ G L+++FM + YG++G A+ ++ N++L +A+LSL ATLTLP + Sbjct: 352 ADSIRAGMISLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLSLFQATLTLPGM 411 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG++L +G+AVD+NIL+NER+REE + ++ ++ GF RA STI DSN TAL+A ++L Sbjct: 412 AGMLLTLGMAVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIML 471 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF-----F 532 F FG G V+ FA+T+ + I ++FT + + R +M+ + ++ + F Sbjct: 472 FVFGTGPVQNFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLR 531 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 +P I FMR RF G+ S + SI S+ L GL G+DF+GGI + P D Sbjct: 532 FVPKGTRINFMRGRFVGLATSAVLSIASVILFLHPGLTLGLDFRGGIVVEARTQGPADFG 591 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT---EIVPLS 649 +R+ L + + Q+F + L+RL P + + + + +P + Sbjct: 592 KIRAALAAQHVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDSVRHAVATLPGA 651 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + + VG +S EL R G++ + IS + +L YIW RF+W FA+ A+ TL+LD+TKT+G Sbjct: 652 QVLRADAVGASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIG 711 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F L EF+L VAA+LT++GYS NDKVVVYDR+R+N++ Y T + +LID SINETL Sbjct: 712 FLVLTHFEFDLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRT-MPLAELIDLSINETL 770 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 GR++ TS F++ LP+A++G + SFA M FGIVV SSSIFIAAP+LL + + R + Sbjct: 771 GRTLGTSSTVFLAALPLALFGA-SLSSFAWVMLFGIVVGTSSSIFIAAPLLLLLGEKRLR 829 Query: 830 N 830 Sbjct: 830 R 830 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 101/264 (38%), Gaps = 10/264 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS----- 628 G + + + + ++ + + ++R G+ Sbjct: 257 QQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAPVIRTAITGGNGQITGG 316 Query: 629 -VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 AQ+ + + + ++ +GP + + IR G++ + + +++++ + Sbjct: 317 FDAQSATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMISLGVGFALVIVFMALF 376 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + F A L+ ++ + +LF L +A +L +G +V+ +++ +R+R+ Sbjct: 377 YG-RFGWYANAALLANLVLMVAVLSLFQATLTLPGMAGMLLTLGMAVDANILINERVREE 435 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + + + + ++ A ++ + + V+G + +FA+ + GI Sbjct: 436 V---GRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQNFALTIMIGIAT 492 Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831 +++ ++ +++ Y A Sbjct: 493 TLFTTLLLSRMLMVRWYARTRPTA 516 >gi|209549097|ref|YP_002281014.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534853|gb|ACI54788.1| protein-export membrane protein SecD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 846 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 299/834 (35%), Positives = 467/834 (55%), Gaps = 19/834 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W +L + ++IA PN L ++ P + ++R++LGLDL+GGSH+VL+V Sbjct: 2 LHFSRWKTLLIWLAAFAAIIIAAPNLLSEAQRSSLPGWLRQDRVTLGLDLQGGSHIVLKV 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + D V L+ +R+ L+ GI + +T+ D + + + Sbjct: 62 ERSDIVKDRLEEAVANVRNTLRGAGIRYTGLTGNDQTVTVRITDPAETQKAVELLKPLTT 121 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + E ++S+ +S I ++ A +S++I+ +RI G + Sbjct: 122 AGGRSGPEVALQQG----EEGQLSLQISDAGITADVASARTRSLDIVARRIAGFGHANFI 177 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234 ++ G+ RI++Q+ G D RL+ LL AK+SFH + + S + + G Sbjct: 178 VRPDGTDRIVVQVLGSVDAERLKNLLNQPAKLSFHLIDASMSGQEALNGRWPATSQVLYS 237 Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 D YLV+ ++G ++ G DP+T + D G RR EVT NIGK Sbjct: 238 LDDPPVPYLVDRTAFLTGSNMVGIEPVVDPQTQDSSIAYRLDADGTRRLAEVTGQNIGKH 297 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+V D +V+++P I+ AI G+ IS NF+ + LA MLRAG+LP L VEER+V Sbjct: 298 LAIVFDDQVMSSPAIDAAITGGEGAISANFSEDGVRDLAIMLRAGALPATLTSVEERSVS 357 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 G+DSI+ G A + +VL+ MI LY G++A S+ N+I +A LSL GATLT Sbjct: 358 PRFGADSIFSGLIAGLVAVVLVAALMIALYRILGVIAVVSLVFNLIFIVAALSLAGATLT 417 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGIVL +G+AVDSN+L+ ERIREE + S + GFSRA++TI D+N+T IA Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAAGRGFSRAFATIVDANVTIFIA 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 ++LFF G ++RGFA+T+ + IL ++FTA ++ R+++ ++ + + + + L+ Sbjct: 478 AIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLQRRHPRHLPKSVLTH--- 534 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592 + + I+FM R + S + S+ ++ T GL GIDF GG + V A + DL+ Sbjct: 535 LFEHANIRFMGIRRYVFTASAIISLIAMAAFATAGLRLGIDFTGGSLIEVTAKQGNADLA 594 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 ++S L L +G++S G N +R+ Q G A+ +V+ ++ E + Sbjct: 595 DLQSRLNDLNLGEVSVTRAGGPSNARIRIASQGGGENAEQSAATLVRGELQE---DYDFR 651 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E+VGP IS EL +GV+ + A+LIYIW+RF+W FA+GAI + D+ LG F Sbjct: 652 RVEVVGPAISGELTMMATLGVLAALAAILIYIWVRFEWQFAVGAIVATLHDVIILLGLFV 711 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L G+EFNLT+VAAVLT++GYS+ND VVVYDRMR+N+K Y + LID SIN+TL R+ Sbjct: 712 LTGMEFNLTSVAAVLTVVGYSLNDTVVVYDRMRENLKRY-KKMPLPILIDASINQTLSRT 770 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + T+ +++L + ++GG VI SF M FG+ + SSI+IAAP+L+ Sbjct: 771 ILTAATTLLALLALYLFGGEVIRSFTFTMLFGVALGTFSSIYIAAPVLIVFRLR 824 Score = 128 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 79/175 (45%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 V P+ + I G++ +++ + + + ++ + A+ +L+ ++ + +L G Sbjct: 355 SVSPRFGADSIFSGLIAGLVAVVLVAALMIALYRI-LGVIAVVSLVFNLIFIVAALSLAG 413 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ ++G +V+ V++Y+R+R+ T+ SF + + + V Sbjct: 414 ATLTLPGIAGIVLIVGMAVDSNVLIYERIREE---EKTAHSFAEAAGRGFSRAFATIVDA 470 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + G I FA+ +A GI+ ++ + I+ R Sbjct: 471 NVTIFIAAIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLQRRHPR 525 >gi|332140267|ref|YP_004426005.1| Acriflavin resistance protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550289|gb|AEA97007.1| Acriflavin resistance protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 858 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 309/853 (36%), Positives = 510/853 (59%), Gaps = 34/853 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + ++Y +I +GLL A PN LPQS+ + P+ + +SLGLDL+GGSHL+L Sbjct: 1 MARFSFRGVVYVLIVMLGLLSAAPNILPQSVKQQLPTWYTTSTLSLGLDLQGGSHLLLAA 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGV----------FSMRQIQNKITLSFADSRFKEN 110 D + L +S ++ S L+ + + S ++ + + Sbjct: 61 DTNALFAKQLNSFSSDVLSELRSQNVRYTRTPHSLSSKASSEDSAGRVVFTLRSADDARK 120 Query: 111 IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170 + D + L V + +++ L + ++++ + +S+E++R+R Sbjct: 121 VKDI------AYQISAQPNTASALDVAIKQNTVTLTLDELYTEELVKDTLNRSVEVVRKR 174 Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230 +++ G++E ++ G IL+Q+PG DP+++++LLGTTA+M+FH + S++ V Sbjct: 175 LNETGLTEPSVTLQGKDAILVQMPGMSDPTQVKKLLGTTAQMTFHWAANSQSEQ-----V 229 Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +D GN Y +E KV + G H+ A +T +PVV D GA++F +TRDNI Sbjct: 230 MNKQDVAGNTYQLEQKVALEGEHITDAAGVLSSETGQPVVTFRLDSAGAKQFATMTRDNI 289 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 G+ LA+VLD +V+TAPVIN IP G+ +I+GNFT+ AG A MLR G+LP+ L I+EER Sbjct: 290 GRVLAIVLDDKVVTAPVINSVIPGGRGEITGNFTLPEAGNTALMLRTGALPVPLTIIEER 349 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG DLGSD+I G + VAG +L++ FM+ +YG+WG +A F++ +N++L L+L GA Sbjct: 350 TVGPDLGSDAIQTGVQSGVAGALLVLAFMVAIYGRWGAIASFALCINMVLVFGALTLFGA 409 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAG++L +G+AVD+NIL+NERIREE++K + ++D+GF +A++TI DSN T Sbjct: 410 TLTLPGIAGLILTMGMAVDANILINERIREESKKGRPAARAIDVGFDKAFATIVDSNFTT 469 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530 LIA +LF FG G ++GFAIT+ L ++ S+FTA+++ + +M+ +++ K + D Sbjct: 470 LIAVSLLFMFGSGPIKGFAITIALGLVSSVFTAVALTKVLMLKVVKSKHRNTRDRTQQRL 529 Query: 531 FFLIPDC--------IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + I F+ R + IS++ ++ SI L GL+YG+DF GG + Sbjct: 530 YLRFSSPLLRLSDKLSGIDFLAKRKIALAISVVLTVLSIGLFAKPGLHYGVDFTGGTMIE 589 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD---SVAQTRVLEMVK 639 + A + +R+ +ES ++ Q + E ++L+R + + + + +K Sbjct: 590 LTAPA-LSTDELRNVIESNGFDQVAIQEYGNEHHYLLRAPVLDSNGELENSNAKQTDALK 648 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + I++ + ++VGPK+S I+ ++I+ ML+Y+W RF+ +FA A+ T Sbjct: 649 RAISQADDTVSFDKIDMVGPKVSGGFAELSILALLIAGGGMLVYLWARFEAHFATAALLT 708 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 ++LD+TKT+GFFAL GIEFNLTAVAA+L LIGYS+NDKVVV DR+R+ ++L + Sbjct: 709 VLLDLTKTVGFFALTGIEFNLTAVAALLALIGYSINDKVVVLDRIRELLRLDPAK-PLAN 767 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 I++++N TL R+V+TS+ +++LPMA++GG + SFA+PM F +VV SS++FI + + Sbjct: 768 TINEAVNSTLSRTVFTSVTTLLALLPMAIFGGDAVESFAVPMVFAVVVGTSSTLFITSTL 827 Query: 820 LLFIYDWRAKNAR 832 L + R + + Sbjct: 828 LYLLGSRRERQGK 840 >gi|190891521|ref|YP_001978063.1| protein-export translocase [Rhizobium etli CIAT 652] gi|190696800|gb|ACE90885.1| protein-export translocase protein [Rhizobium etli CIAT 652] Length = 846 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 298/834 (35%), Positives = 461/834 (55%), Gaps = 19/834 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W +L ++ ++IA PN L ++ P + +R+ LGLDL+GGSH+VL+V Sbjct: 2 LHFSRWKTLLIWLVAFAAVVIAAPNLLSEAQRASLPDWLRNDRVMLGLDLQGGSHIVLKV 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + D V L+ +R+ L+ GI + +++ D + D++ Sbjct: 62 ERSDIVKDRLEEAVANVRNALRGAGIRYTGLTGNDRTVSVRITDPAETQKAIDRLKSLTT 121 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + E ++S+ +S +I ++ A +S++I+ +RI G Sbjct: 122 TGRDSAPELTLQQG----GEGQLSLQISDADITADVASARTRSLDIVGRRIAGFGYENFL 177 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234 ++ G RI +Q+ G D RL+ LL AK+SFH + + S + + G Sbjct: 178 VRPEGDDRITVQVLGSVDAERLKNLLNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYS 237 Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 D YLV+ S ++ D +T + D G +R EVT NIGK Sbjct: 238 LDDPPVPYLVDRTAFASAGNMVDIQPVVDSQTQDTSIAYRLDAEGTKRLAEVTGQNIGKH 297 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+V D +V++AP I+ AI +G+ +IS NF+ + LA MLRAG+LP L VEER+V Sbjct: 298 LAIVFDDQVMSAPAIDAAITNGEGRISANFSEDGVRDLAVMLRAGALPATLTSVEERSVS 357 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 G +SI G A + +VL+ MI LY G++A S+F N+IL +A LSL GATLT Sbjct: 358 PTFGGESIVSGFVAGLVAVVLVAALMIALYRILGVIAVVSLFFNLILIIAALSLAGATLT 417 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGIVL +G+AVDSN+L+ ERIREE + S + GFSRA++TI D+N+T IA Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAAGRGFSRAFATIVDANVTIFIA 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 V+LFF G A+RGFA+T+ + IL ++FTA ++ R+++ + + + + + + Sbjct: 478 AVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRHPRHLPRSVFTH--- 534 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592 + + I+FM R + S S+ ++ T GL GIDF GG + V A + D++ Sbjct: 535 LFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLIEVTAKQGNADIA 594 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 +RS L L +G++ + G N +R+ Q G A+ +V+ ++ + Sbjct: 595 DLRSRLNDLNLGEVGVERTGGPANARIRIASQGGGENAEQSAATLVRGELEA---DYDFR 651 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E+VGP IS EL +G++ + A+L+YIWIRF+W FA+GAI + D+ LG F Sbjct: 652 RVEVVGPAISGELTMMATLGIVAALAAILLYIWIRFEWQFAVGAIVATLHDVIIMLGLFV 711 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L GIEFNLT++AAVLT++GYS+ND VVVYDRMR+N+K YT + LID SIN+TL R+ Sbjct: 712 LTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRYTK-MPLPILIDASINQTLSRT 770 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 V T+ +++L + ++GG V+ SFA M FG+ + SSI+IAAP+L+ Sbjct: 771 VLTAATTLLALLALYLFGGDVMRSFAFAMLFGVALGTFSSIYIAAPVLIVFRLR 824 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 76/175 (43%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 V P E I G V +++ + + + ++ + A+ +L ++ + +L G Sbjct: 355 SVSPTFGGESIVSGFVAGLVAVVLVAALMIALYRI-LGVIAVVSLFFNLILIIAALSLAG 413 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ ++G +V+ V++Y+R+R+ T+ SF + + + V Sbjct: 414 ATLTLPGIAGIVLIVGMAVDSNVLIYERIREE---EKTAHSFAEAAGRGFSRAFATIVDA 470 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + G I FA+ +A GI+ ++ + I+ R Sbjct: 471 NVTIFIAAVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRHPR 525 >gi|85706263|ref|ZP_01037358.1| Protein-export membrane protein secD [Roseovarius sp. 217] gi|85669427|gb|EAQ24293.1| Protein-export membrane protein secD [Roseovarius sp. 217] Length = 888 Score = 409 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 309/863 (35%), Positives = 486/863 (56%), Gaps = 41/863 (4%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ-----------------------SMLDRFPSAMPKN 42 W +L +C GL++ALPN + L +PS +P Sbjct: 19 WKRLLIWSVCLWGLVVALPNAFYPQVERYNDAVALQAETGAVPSELAADLAGWPSWLPSG 78 Query: 43 RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKIT 99 +SLGLDLRGG+HL+ EV +D + ++R L+ V R+ + ++ Sbjct: 79 LVSLGLDLRGGAHLLAEVQVEDVYAARMDALWPQVRDALRDVRDEVGPFRREEAAAGELR 138 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 ++ +D E + V S + ++ +S+ LS+ Sbjct: 139 IALSDPAGSEAALAAIWALATPVVSMTGAG-QADIEARAEGGVLSVTLSEAERAVTDERT 197 Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV-- 217 ++QS+EIIR+R+D++G E TIQR G+ RILIQ+PG S L+ L+GTTA+++FH V Sbjct: 198 VQQSLEIIRRRVDEVGTREPTIQRQGADRILIQVPGIGSASELKALIGTTARLTFHPVIG 257 Query: 218 --LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 ++ + D G Y V+ +SG +L A F + ++P V FD Sbjct: 258 RAASADAVAEPGTLILPSLDDAGLVYRVDQTPVVSGDNLVDAKPMF-DRNNRPAVSFRFD 316 Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335 GAR F + T +IG+P A+VLD V++APVI I SG I+G FT+E + L+ +L Sbjct: 317 PTGARAFGDYTASHIGQPFAIVLDNEVISAPVIQSHIASGSGIITGQFTVEDSTELSVLL 376 Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395 RAG+LP ++ +EER +G +LG DSI G A G+V +++FM+ YG +G++A F++ Sbjct: 377 RAGALPAEMTFLEERTIGPELGQDSIDAGQRAAAIGMVAVIVFMVACYGSFGVMAVFALS 436 Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455 LN+ L +A L+++GATLTLP IAGIVL +G+AVD+ +L+ ERIREE R+ + ++++G Sbjct: 437 LNMALLIAALAVIGATLTLPGIAGIVLTMGMAVDATVLIFERIREELRQGRPAGRAIELG 496 Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 F RA S I DSNIT L+ +++F G GAVRGFA+T+GL ++ SMFTAI + R ++ + Sbjct: 497 FQRALSAILDSNITGLLTALIMFAIGSGAVRGFAVTLGLGLVTSMFTAIYVTRLIIETWM 556 Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575 + K I L PD I F RA++ G+S+ + S+ L+ T GLN+GIDF Sbjct: 557 --RWRKPGSITLKGWIKLAPDRTTIDFFRAQWATFGVSVFAVVASLLLVATLGLNFGIDF 614 Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSV 629 KGG A + ++L R+ L SLQ+GD++ ++R+Q Q G Sbjct: 615 KGGTTFRTEAVQEINLEAYRAALSSLQLGDVAVSEVFDPGFRADQHVAMIRVQAQDGGEA 674 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 ++ V+ + + P E VGPK+S ELI ++ V A +L+Y+W+RF+ Sbjct: 675 ISVETVQQVQAALRAVDPGIAFTAVESVGPKVSAELIWLALMAVGAGAFGILVYVWMRFE 734 Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 W FA+G + L D+ T+G FALF +F+LT VAA+LT++GYSVND VV++DR+R+N+ Sbjct: 735 WQFAVGTVAALAHDVIVTIGVFALFQFKFDLTIVAALLTILGYSVNDTVVIFDRLRENLT 794 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809 + + R+L++ S NETL R++ T++ I+++ + V+GG VI F M FG+V+ Sbjct: 795 KF-KVMPLRELMNLSANETLSRTLMTAVTTLIALIVLLVFGGDVIRGFVFAMVFGVVIGT 853 Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832 S++++A I+LF+ R+ + Sbjct: 854 WSTLYVAKNIVLFLGLDRSDVPK 876 >gi|297568618|ref|YP_003689962.1| protein-export membrane protein SecD [Desulfurivibrio alkaliphilus AHT2] gi|296924533|gb|ADH85343.1| protein-export membrane protein SecD [Desulfurivibrio alkaliphilus AHT2] Length = 870 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 260/870 (29%), Positives = 433/870 (49%), Gaps = 58/870 (6%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + L + ++ LP+ L + + + + LGLDL+GG HLVL+VD D Sbjct: 6 KWKIGLLFFMIVFAVVTVLPS-LSVPVPGWWKKNLAPEGLRLGLDLQGGMHLVLKVDIDQ 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL-SFADSRFKENIADKVTLFLQGVN 123 + L + ++ELR+ ++ E I + R I + + + + V + Sbjct: 65 AIANSLDLAAEELRATMRDERITLVRARHDDPHIAVFTLPNV----EALNTVERAVANDF 120 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 L + + T + + L ++ + +A+ QS+EIIR RIDQ G++E I R Sbjct: 121 PNLKIRVES---EEGTFPRVFLSLDDEQVEFIEQNAVRQSLEIIRNRIDQFGVAEPVIVR 177 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237 G I++QLPG +DP R L+G TA++ F V + + + Sbjct: 178 QGLDEIVVQLPGVRDPDRAIDLIGQTAQLEFKLVDDSGVVDLDRLINQAIEAGQWERGGD 237 Query: 238 --------------------------------GNQYLVEDKVEISGIHLNGATANFDPKT 265 L+ ++G + A Sbjct: 238 RQQLNQALRGQLPEEREIYFHRRVDRETGQERQEPILLHVTSLMTGEMVRDARVRVGGTF 297 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 ++P V + G R F ++T N+G+ LA+VLD V +APVI + I G AQISG FT Sbjct: 298 NEPYVSLDLTARGGRLFGQITERNVGRQLAIVLDDVVRSAPVIRERILGGSAQISGGFTH 357 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 A LA +LR G+LP ++I++ VGA LG DSI +G A + G +L+ FM++ Y Sbjct: 358 GEASDLAIVLRVGALPAPVDIIQNLTVGASLGQDSIQRGIIAGLFGALLVATFMVIYYRL 417 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A+ ++ LNV+ L+++ ATLTLP IAGI+L IG+AVD+N+L+ ER+REE Sbjct: 418 SGVIANAALLLNVLFIFTGLAMMQATLTLPGIAGIILAIGMAVDANVLIFERMREEFALG 477 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 ++V ++ G+S+A+STI DS +T LI + LF FG G ++GFA+T+ L + ++ T + Sbjct: 478 KTVKSGVEGGYSKAFSTIIDSQVTTLITALALFLFGTGPIQGFAVTLSLGVTFNLITTLF 537 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS---ICSIC 562 + + F+ +K+K I + + FMR R + GIS + ++ Sbjct: 538 GTKIVYDFLHSKRKLKEIRF------LTLLTNPGLDFMRLRRYAFGISGIMLLVGAVAMV 591 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622 ++ N G+DF GG A +P DL+ VR L + Q+ +GE +VR++ Sbjct: 592 EVYRGTANLGVDFSGGTMAQYQAQQPFDLAEVRQALSDAGLEGAQPQHVEGENRLIVRIK 651 Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 T + + ++ +G IS L K + ++I+ + +LI Sbjct: 652 EDREVVGQITNTITAALDQYLGDKGFWL-ESQSEIGSAISETLRNKALQAILIALLGVLI 710 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 Y+ +RF+ F L A D+ LG LF IE L V A+LT+ GYS+ND VVV+D Sbjct: 711 YLALRFQMRFGLAAAGATFHDVIVVLGICWLFNIEITLLIVTALLTIAGYSLNDSVVVFD 770 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+N+K + LI++S+NE + R+V TS+ + ++ + ++GG V+ F++ + Sbjct: 771 RIRENIKK-RPGDDLKVLINRSVNEIISRTVITSLTTALVLVSLLIYGGVVLHDFSLVLL 829 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 GI+V SSIF+A+P+L+ + + + A+ Sbjct: 830 IGILVGTFSSIFVASPLLMMLPGSQHEMAK 859 >gi|222085794|ref|YP_002544324.1| protein-export translocase protein [Agrobacterium radiobacter K84] gi|221723242|gb|ACM26398.1| protein-export translocase protein [Agrobacterium radiobacter K84] Length = 848 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 281/832 (33%), Positives = 454/832 (54%), Gaps = 20/832 (2%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65 W +L + +L A+PN L + L FP+ + ++ LGLDL+GGSH++L+++ DD Sbjct: 7 WKTVLIWFAVLLSVLFAVPNLLNEQRLASFPNWFAQRKVELGLDLKGGSHIMLKIERDDV 66 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125 V L+ ++ + L+ I + KI L D + + Sbjct: 67 VRNRLETVVGDISARLRTVNIPYSGLTGTGQKIQLRINDPAQVQAAVIALKPITDAA--- 123 Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185 + L +SI ++ I +S A+ +S+++I RI Q+ + E I+R G Sbjct: 124 --SGKPEATLSQGDNGALSIDITDAGIKDGLSAAVTRSLKVISNRIVQLDVGEPLIRRQG 181 Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------RDSDG 238 + RI+IQ+PG DP RL+ LL A++SF V + + M G D Sbjct: 182 ADRIVIQVPGLGDPQRLKNLLNQPAELSFRLVDSSMPVQDAMNGRPPAGSEVLFSEDDPP 241 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 YL++ + +S I A A + + + V + RF + T N+GK +AVVL Sbjct: 242 AGYLLQKQPLLSNIDFADAAAVSNTQNNDGNVTVKLTPEATGRFAQATAANLGKVIAVVL 301 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 DG+VL++ + AI +G+ I G+FT + A L+ ML++G LP L VEER + LG+ Sbjct: 302 DGQVLSSASLKNAITTGEINIPGDFTAQGAQDLSVMLKSGPLPATLTTVEERTIEPGLGN 361 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 +++ G A V + + MI YG G+ A ++ +N+++ LAL+ + G TLTLP IA Sbjct: 362 ETMRSGVMACVIAAIFVAALMIGFYGLLGVAATIALIINIVMVLALMGVFGITLTLPGIA 421 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 IVL IG+A+D+N+L+ ER+REE +K + +L GF+RA ST+ D+N T LI +LF Sbjct: 422 AIVLIIGMALDANVLIYERVREEEKKTHLLVDALRHGFNRAVSTVADANFTVLIIAAILF 481 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 + GAVRGFA T+ + + + FTA + R+++ I ++K + + I D Sbjct: 482 YVSSGAVRGFAATLIVGVFTTFFTACFVTRSLVSAWISHRKPRVLLAGV---RSGIFDGA 538 Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DLSVVRSN 597 I+FM R + +S S+ ++ G++ GIDF GG + V A + V D + +++ Sbjct: 539 NIRFMGIRRYTFTVSAALSVATLLAFAAVGMHLGIDFTGGSIIEVRAKQGVADTADIQAR 598 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L+ GD+ + D ++R+ Q G A+ L +V+ ++++ E+V Sbjct: 599 LQETIPGDVQVERLDDRLGAVIRVHAQEGGENAEQSALTLVRDELSK---DYDFSRVEVV 655 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP +S E+ + + V+ + A+LIYIW+RF+W FA+GAI + D+ TLG F L G+E Sbjct: 656 GPSVSGEITKTASLAVLAALAAILIYIWLRFEWQFAVGAIIATLHDVILTLGLFVLTGME 715 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FN+T +AA+LT++GYS+ND VVVYDRMR+N++ Y+ + LID SIN+TL R+V TS Sbjct: 716 FNMTGIAALLTIVGYSLNDTVVVYDRMRENLRRYSQ-MPLPILIDASINQTLSRTVLTSA 774 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +++L + ++GG VI SF + FG+ V SSI+IAAP+L+ K Sbjct: 775 TTLLALLALYIFGGEVIRSFTFVLLFGVAVGTFSSIYIAAPVLIVFKLRPDK 826 Score = 128 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 93/274 (33%), Gaps = 4/274 (1%) Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + ++ N + + + + ++ + + + Sbjct: 255 IDFADAAAVSNTQNNDGNVTVKLTPEATGRFAQATAANLGKVIAVVLDGQVLSSASLKNA 314 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 PGD AQ V K + T + P + E +R G++ +I+ Sbjct: 315 ITTGEINIPGDFTAQGAQDLSVMLKSGPLPATLTTVEERTIEPGLGNETMRSGVMACVIA 374 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 AI + + + + A LI++I L +FGI L +AA++ +IG +++ Sbjct: 375 AIFVAALMIGFYGL-LGVAATIALIINIVMVLALMGVFGITLTLPGIAAIVLIIGMALDA 433 Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V++Y+R+R+ + D + N + + I + + Sbjct: 434 NVLIYERVREE---EKKTHLLVDALRHGFNRAVSTVADANFTVLIIAAILFYVSSGAVRG 490 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 FA + G+ ++ F+ ++ R Sbjct: 491 FAATLIVGVFTTFFTACFVTRSLVSAWISHRKPR 524 >gi|320355036|ref|YP_004196375.1| protein translocase subunit SecF/D [Desulfobulbus propionicus DSM 2032] gi|320123538|gb|ADW19084.1| protein translocase subunit secF;protein translocase subunit secD [Desulfobulbus propionicus DSM 2032] Length = 857 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 254/863 (29%), Positives = 420/863 (48%), Gaps = 58/863 (6%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 + L + L+ P+ D + + + LGLDL+GG H+VL+VD D Sbjct: 6 KLKIWLVIFLLFFSGLVLAPSVYHDLP-DWWKKYLAPAGLKLGLDLQGGMHIVLQVDLDK 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVN 123 L + + + +S L + I M N I + ++ E + + ++ Sbjct: 65 AAENSLDLSASDFKSALAAKNINAVRMDTGTPNAILFTLPNTSAIETVKQILKENFPNLD 124 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 S++ + T I++ L ++ + +A+ QS+EIIR RIDQ G++E + R Sbjct: 125 SQVEAEA-------GTFPRITLRLKSEEVEFIRKNAVNQSLEIIRNRIDQFGVAEPIVLR 177 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237 G ++I++QLPG +DP R L+G TA++ F V + Sbjct: 178 QGENQIVVQLPGVKDPQRAMSLIGQTAQLEFKMVAEAPGLNLGQMIDEVTKTGQWREGDS 237 Query: 238 --------------------------------GNQYLVEDKVEISGIHLNGATANFDPKT 265 L+E+ V ++G + A Sbjct: 238 RKQLNFALQNRLPQGTEIYFEKVIDSKTKKESRIPILLENPVLMTGEMVKNAQVRIGGTF 297 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 ++P V + G + F +T N+ + LA+VLD V +APVI + I G AQISGNFT Sbjct: 298 NEPYVSLDLTGHGGQVFAHLTEKNVNRRLAIVLDEIVRSAPVIREKILGGSAQISGNFTH 357 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 A LA +LR G+LP ++I++ VGA LG DSI G + + G +L++ FM++ Y Sbjct: 358 NEATDLAIVLRVGALPAPVDIIQNLTVGASLGQDSIKDGLSSGLFGALLVIAFMVLYYRV 417 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A+ S+ LN++ L++LGATLTLP IAGI+L IG+ VD+NIL+ ER+R+E Sbjct: 418 SGIIANVSLALNILFLFVGLAMLGATLTLPGIAGIILSIGMGVDANILIYERMRDEFALG 477 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +S+ +D GF++A+ +I D +T LI +VLF FG G ++GFAIT+ L IL ++F + Sbjct: 478 KSLRSGVDAGFNKAFWSIVDGQVTTLITALVLFLFGTGPIKGFAITLTLGILFNLFAVLF 537 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC--- 562 R M ++ K +K I + FMR R +S + + Sbjct: 538 FSRLMYDSLLSLKWLKRISF------LKLIGKTNFDFMRLRKVAYSVSAVLVALGLIAFV 591 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622 + N G+DF GG L A + L VR L + +I + Q E +V+++ Sbjct: 592 QIMRGHANMGVDFSGGTMLQYKAEQAFSLEEVRGLLRANEISGVDLQQVTNENRLIVKIK 651 Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 + + + T+++ +G +S +L K ++ +I+S + +++ Sbjct: 652 KSEEKVSNLGDRISTILGT-DQAHAGFTLESKSEIGASVSADLRNKAVISIILSMLGVVV 710 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 Y+ RF + F L A + D+ LG L E NL V A+LTL GYS+ND VV++D Sbjct: 711 YLAFRFDFRFGLAATVATLHDVLAVLGVCWLMDKEMNLLIVTALLTLAGYSLNDTVVIFD 770 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+NM ++F +I++SIN+ LGRS+ T M+ + + +GG+ + F+ + Sbjct: 771 RIRENMYTDER-LTFFQIINESINQVLGRSIMTGMSVLFCLASLFFFGGATLHDFSFALL 829 Query: 803 FGIVVAASSSIFIAAPILLFIYD 825 G+VVA SS+F+A+P+L Sbjct: 830 VGLVVAFFSSVFVASPLLTITGK 852 >gi|327189121|gb|EGE56306.1| protein-export translocase protein [Rhizobium etli CNPAF512] Length = 846 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 301/834 (36%), Positives = 464/834 (55%), Gaps = 19/834 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W +L ++ ++IA PN L ++ P + +R+ LGLDL+GGSH+VL+V Sbjct: 2 LHFSRWKTLLIWLVAFAAVVIAAPNLLSEAQRASLPDWLRHDRVMLGLDLQGGSHIVLKV 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + D V L+ +R+ L+ GI + +++ D + D++ Sbjct: 62 ERSDIVKDRLEEAVANVRNALRGAGIRYTGLTGNDRTVSVRITDPAETQKAVDRLKSLTT 121 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + E ++S+ +S +I ++ A +S++I+ +RI G Sbjct: 122 TGRDSAPELTLQQG----GEGQLSLQISDADITADVASARTRSLDIVGRRIAGFGYENFL 177 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234 ++ G RI +Q+ G D RL+ LL AK+SFH + + S + + G Sbjct: 178 VRPEGDDRITVQVLGSVDAERLKNLLNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYS 237 Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 D YLV+ S ++ DP+T + D G +R EVT NIGK Sbjct: 238 LDDPPVPYLVDRTAFASAGNMVDIQPVVDPQTQDTSIAYRLDAEGTKRLAEVTGQNIGKH 297 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+V D +V++APVI+ AI +G+ +IS NF+ + LA MLRAG+LP L VEER+V Sbjct: 298 LAIVFDDQVMSAPVIDAAITNGEGRISANFSEDGVRDLAVMLRAGALPATLTSVEERSVS 357 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 G +SI G A + +VL+ MI LY G++A S+F N+IL +A LSL GATLT Sbjct: 358 PTFGGESIVSGLVAGLVAVVLVAALMIALYRILGVIAVVSLFFNLILIIAALSLAGATLT 417 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGIVL +G+AVDSN+L+ ERIREE + S ++ GFSRA+STI D+N+T IA Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTTHSFAEAVGRGFSRAFSTIVDANVTIFIA 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 V+LFF G ++RGFA+T+ + IL ++FTA ++ R+++ + + + + + L+ Sbjct: 478 AVILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRHPRHLPKSVLTH--- 534 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592 + + I+FM R + S S+ ++ T GL GIDF GG + V A + D++ Sbjct: 535 LFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLIEVTAKQGNADIA 594 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 +RS L L +G++ + G N +R+ Q G A+ +V+ ++ + Sbjct: 595 DLRSRLNDLNLGEVGVERTGGPANARIRIASQGGGENAEQSAATLVRGELEA---DYDFR 651 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E+VGP IS EL +G+ + A+L+YIWIRF+W FA+GAI + D+ LG F Sbjct: 652 RVEVVGPAISGELTMMATLGIAAALAAILLYIWIRFEWQFAVGAIIATLHDVIIMLGLFV 711 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L GIEFNLT++AAVLT++GYS+ND VVVYDRMR+N+K YT + LID SIN+TL R+ Sbjct: 712 LTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRYTK-MPLPILIDASINQTLSRT 770 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 V T+ +++L + ++GG V+ SFA M FG+ + SSI+IAAP+L+ Sbjct: 771 VLTAATTLLALLALYLFGGDVMRSFAFAMLFGVALGTFSSIYIAAPVLIVFRLR 824 Score = 129 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 66/147 (44%), Gaps = 4/147 (2%) Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 + ++ + A+ +L ++ + +L G L +A ++ ++G +V+ V++Y+R Sbjct: 383 MIALYRI-LGVIAVVSLFFNLILIIAALSLAGATLTLPGIAGIVLIVGMAVDSNVLIYER 441 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 +R+ T+ SF + + + + V ++ FI+ + + G I FA+ +A Sbjct: 442 IREE---EKTTHSFAEAVGRGFSRAFSTIVDANVTIFIAAVILFFLGSESIRGFAVTLAV 498 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKN 830 GI+ ++ + I+ R Sbjct: 499 GILTTVFTAFTLTRSIVAVWLARRHPR 525 >gi|94266649|ref|ZP_01290326.1| SecF protein:SecD export membrane protein [delta proteobacterium MLMS-1] gi|93452696|gb|EAT03247.1| SecF protein:SecD export membrane protein [delta proteobacterium MLMS-1] Length = 869 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 248/863 (28%), Positives = 432/863 (50%), Gaps = 53/863 (6%) Query: 1 MRNN-PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+++ W + L ++ ++ LP+ L ++ + + ++LGLDL+GG HLVL+ Sbjct: 1 MQSSLKWKIGLLFIMIFFSVVTVLPS-LGVAVPGWWKKNLAPEGLNLGLDLQGGMHLVLQ 59 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL-SFADSRFKENIADKVTLF 118 VD D + L + ++ELR ++++ + + R + + + + R + + V Sbjct: 60 VDIDRAIANSLDLAAEELRELMREQQVTLVRARTDDHHTAVYTLPNVRALDTVQRVVDN- 118 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + T I + L+ ++ + +A+ QS+EIIR RIDQ G++E Sbjct: 119 ------DFPDLNMRVESEEGTFPRIYLSLNDEQVEFIEQNAVRQSLEIIRNRIDQFGVAE 172 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD- 237 I R G I++QLPG +DP R +L+G TA++ F V + + + + Sbjct: 173 PVIVRQGLDEIVVQLPGVRDPERAIELIGQTAQLEFKLVDDSPAVDLRQLIDQAIAAGQW 232 Query: 238 -------------------------------------GNQYLVEDKVEISGIHLNGATAN 260 L+ ++G + A Sbjct: 233 EWGEDRQQLNQALRGQLPEEREIYFHRTVDRQTDTERREPILLHTTSLMTGEMVRDARVR 292 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320 ++P V + GAR F ++T N+G LA+VLD V +APVI + I G AQI+ Sbjct: 293 VGGTFNEPYVSLDLTTRGARVFGQITERNVGNQLAIVLDEVVRSAPVIRERILGGSAQIT 352 Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380 G F A LA +LR G+LP + I++ VGA LG DSI +G + + G ++++FM+ Sbjct: 353 GGFDHSEASDLAIVLRVGALPAPVEIIQNLTVGASLGQDSIQRGIVSGLFGAFMVMVFMV 412 Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440 + Y G++A+ ++ +N++ L+L+ ATLTLP IAGI+L IG+AVD+N+L+ ER+RE Sbjct: 413 IYYRLSGVIANAALLMNILFIFTGLALMQATLTLPGIAGIILAIGMAVDANVLIFERMRE 472 Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500 E ++V ++ G+ +A+STI DS +T LI + LF FG G ++GFA+T+ L + ++ Sbjct: 473 EFALGKTVKSGVEGGYGKAFSTIIDSQVTTLITALALFLFGTGPIQGFAVTLSLGVTFNL 532 Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560 + + + F+ +K++ I L R + +L + Sbjct: 533 IATLFGTKVVYDFLHAKRKLREIHFMKLFSRPQFDFMA---IRRYAYLLSAALLLMGAVA 589 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 + +F N G+DF GG A +P +L+ VR+ L+ + Q+ +GE ++R Sbjct: 590 VVEIFRGTANLGVDFAGGTMSQYQAEQPFELAEVRTALDRAGLEGAQPQHVEGENRLIIR 649 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 L+ + T L ++ +++ +G IS L K + ++++ + + Sbjct: 650 LKEEREVVGDITGTLTAALEEHMP-GTNFILESQSEIGSAISETLRNKALQAILVALLGV 708 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 + Y+ +RF F L A+ T D+ LG L IE L V A+LTL GYS+ND VV Sbjct: 709 VCYLALRFDLRFGLAAVATTAHDVLVVLGIAWLLNIEITLLIVTAILTLAGYSLNDSVVA 768 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 +DR+R+N+K + +I++SIN+ + R+V TSM +L + ++GG+VI F++ Sbjct: 769 FDRIRENIKK-RPAEPLSTVINRSINDIMSRTVITSMTTAFVLLSLIIYGGAVIHDFSLT 827 Query: 801 MAFGIVVAASSSIFIAAPILLFI 823 + GIVV SSIF+A+P+L+ + Sbjct: 828 LLIGIVVGTFSSIFVASPLLMVL 850 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 82/175 (46%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VG + ++ I++GIV + A +++++ I ++ + A L+++I AL Sbjct: 383 TVGASLGQDSIQRGIVSGLFGAFMVMVFMVIYYRLS-GVIANAALLMNILFIFTGLALMQ 441 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++++RMR+ L + + ++ + + + Sbjct: 442 ATLTLPGIAGIILAIGMAVDANVLIFERMREEFAL---GKTVKSGVEGGYGKAFSTIIDS 498 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + I+ L + ++G I FA+ ++ G+ +++F + F++ R Sbjct: 499 QVTTLITALALFLFGTGPIQGFAVTLSLGVTFNLIATLFGTKVVYDFLHAKRKLR 553 >gi|51244658|ref|YP_064542.1| protein-export membrane protein SecD [Desulfotalea psychrophila LSv54] gi|50875695|emb|CAG35535.1| related to protein-export membrane protein SecD [Desulfotalea psychrophila LSv54] Length = 867 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 265/866 (30%), Positives = 435/866 (50%), Gaps = 60/866 (6%) Query: 1 MRNNPWLVILYSMICCI--GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58 M+ + + L + C + + +P+F + D + M + LGLDL+GG HLVL Sbjct: 14 MK-SKLKIKLVLLFCLVCMSGITLMPSFYSSTP-DWWKKYMAPEGLRLGLDLQGGMHLVL 71 Query: 59 EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117 +V+ LQ +++L+ L +E I Q + I + ++ + + Sbjct: 72 KVNLPKAEENALQFAANDLKDTLAEESISAVRTPSGQADTIVFTLPNASAIGKVKTIIDS 131 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +N +++ + I++ L+Q D + +A+ QS+EIIR RIDQ G++ Sbjct: 132 EFPNINVRIDN-------KEGSFPRIALTLTQEKKDFIYDNAVNQSLEIIRNRIDQFGVA 184 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-- 235 E I R G+ I+IQLPG +DP R +LLG TA++ F V + Sbjct: 185 EPVIIRQGNDEIVIQLPGVKDPKRALKLLGDTAQLEFKVVSDTPGVNLRQIINQARDTKK 244 Query: 236 ------------------------------------SDGNQYLVEDKVEISGIHLNGATA 259 L+E+KV ++G + A Sbjct: 245 WQDGEDTVKLNRAIESLLPEGTSIYFEKDIDPKTGKEIVTPLLLENKVLMTGDMIKDAQV 304 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319 ++P V + G R F ++T N+G+ +A+VLD V +APVI + I G AQI Sbjct: 305 RIGGTFNEPYVSLDMTGRGGRVFAKITEQNVGRRMAIVLDNVVRSAPVIRERIIGGSAQI 364 Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 SG+F+ E A LA +LR G+LP ++I++ VGA LG DSI KG + + G +L+++FM Sbjct: 365 SGSFSHEDAADLAIVLRVGALPAPVDIIQNVTVGASLGQDSINKGLYSGLFGTLLVLIFM 424 Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439 + Y G++A+ ++FLN++L L++L ATLTLP IAGI+L IG+AVDSN+L+ ER+R Sbjct: 425 AIYYRLSGVIANTALFLNILLLFTGLAILNATLTLPGIAGIILSIGMAVDSNVLIFERMR 484 Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499 +E +SV S++ GF +A+ TI DS +T LI + LF FG G ++GFAIT+ L I+ + Sbjct: 485 DEYTLGKSVRASINAGFDKAFWTIVDSQVTTLITAMALFLFGTGPIKGFAITLSLGIIFN 544 Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559 +FTA+ R M I + MK++ + +I ++ R IS + I Sbjct: 545 LFTALFFSRTMFETINSIRPMKTLKF------MELVKRPSIDYLSLRKISFTISTVMVII 598 Query: 560 SICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + G N G+DF GG L + +S VR+ + + + Q + E Sbjct: 599 GLFAVIQIGRGAANLGVDFSGGSLLQYKVSSDFSMSEVRNAFKGTPLEGANLQEVENEHQ 658 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 +++L+ + + + T+++ +G +S L K I+ ++IS Sbjct: 659 LMIKLKKSDETVANLSEQADKILGS-KITDKTFTLESQSEIGSSVSAVLRDKAILAIVIS 717 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 + +++Y+ +RF + F L A D+ LG L IE L V A+LTL GYS+ND Sbjct: 718 MVGVILYLALRFDFRFGLAAAAATFHDVLVVLGLCWLMNIEITLLIVTALLTLAGYSLND 777 Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 VVV+DR+R+N + SF +I+ S+N+ + R++ S+ + +L + + GG VI Sbjct: 778 SVVVFDRIRENTQKADKHDSFFSIINNSVNQVISRTIIVSLTTVLVLLVLFLMGGPVIHD 837 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLF 822 F+ + GI+V SSIFIA+P+L Sbjct: 838 FSFTLLIGIIVGTYSSIFIASPLLTI 863 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 4/178 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 VG + ++ I KG+ + + +LI++ I ++ + A T L L+I A Sbjct: 393 QNVTVGASLGQDSINKGLYSGLFGTLLVLIFMAIYYRLS-GVIANTALFLNILLLFTGLA 451 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 + L +A ++ IG +V+ V++++RMR YT S R I+ ++ Sbjct: 452 ILNATLTLPGIAGIILSIGMAVDSNVLIFERMRDE---YTLGKSVRASINAGFDKAFWTI 508 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 V + + I+ + + ++G I FAI ++ GI+ +++F + + I R Sbjct: 509 VDSQVTTLITAMALFLFGTGPIKGFAITLSLGIIFNLFTALFFSRTMFETINSIRPMK 566 >gi|15965292|ref|NP_385645.1| bifunctional preprotein translocase subunit SecD/SecF [Sinorhizobium meliloti 1021] gi|307307882|ref|ZP_07587607.1| protein-export membrane protein SecD [Sinorhizobium meliloti BL225C] gi|15074472|emb|CAC46118.1| Putative protein-export membrane protein [Sinorhizobium meliloti 1021] gi|306901498|gb|EFN32101.1| protein-export membrane protein SecD [Sinorhizobium meliloti BL225C] Length = 858 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 275/841 (32%), Positives = 460/841 (54%), Gaps = 20/841 (2%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +P+ IL ++ GL ALPN L + L +P+ +P ++ LGLDLRGGSH+VL+V Sbjct: 3 RLSPFKNILIWLVVLAGLAFALPNLLSREQLADWPTWLPHRQVPLGLDLRGGSHIVLKVS 62 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 +D V LQ D + L++ I + + D+ D + + Sbjct: 63 REDIVAERLQSTIDTIADALRQADIRYTGLSGSGQGLQFRLRDATKAPAARDALKALVAP 122 Query: 122 VN-SKLNVDPKKNLLVTTT--EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 V L + + L+ + + + L+ ID +S A+ QS+E++R+R+ ++ Sbjct: 123 VRQGGLFGNSIQELVYEESATSDTLRLRLTDEGIDLRVSDAVAQSIEVVRRRVGEVIAVV 182 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK-------KGFMFGVR 231 I+R G R+ +Q+PG +P RL+ LLG ++ + + V Sbjct: 183 PIIERRGGDRLSVQVPGLDEPQRLKDLLGQRGDVALKWLDSSMPAQQAVDTRPPAGSEVL 242 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + D YLVE + + A FDP T +PVV+ A R + + Sbjct: 243 YSLDDPPIPYLVERRAFAAAPDFVEAQPGFDPATSEPVVNARIAAGAAARVAPFLQSDPR 302 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K A+VLDG+V++ V++ A+ +ISGN + + A LAA++RAG LP+ L ++EER Sbjct: 303 KQFAIVLDGQVISTSVLDGALSGDAVRISGNLSEDGANDLAALMRAGPLPVSLTVIEERT 362 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG + G+D++ G A + + + MI YG +G+VA ++ +NV+L +A+LS+ GAT Sbjct: 363 VGPEDGADAVANGLTAGLIAAIAVAACMIGFYGFFGVVAVIAVIVNVVLIIAVLSVTGAT 422 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 LTLP IAGI+L IG+AVDSN+L+ ER+REE + + +LD GF R +I D+N+T Sbjct: 423 LTLPGIAGIILTIGIAVDSNVLIYERLREEARTSGKPLRRALDDGFERVLRSIVDANLTI 482 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530 IA +L + G GA+RGFA+T+ + + ++ TA S+ R ++ R + + + + Sbjct: 483 FIAGAILLYLGSGAIRGFAVTLAIGSVTTILTAHSLTRRLIRGWYRRRLPQRLPRGIRTG 542 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPV 589 FF D +FM R + S+ S+ LL + GLN G DF+GG + + A Sbjct: 543 FFSRAD---FRFMAIRNPVFILMTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVA 599 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 D + +R+ L+ L +GD+ + ++ LVR+ Q A+ + +V+ ++ + Sbjct: 600 DGADIRARLDELNLGDVQVEELGSARDVLVRIPSQEAGDNAEQTAVGLVRSELED---QY 656 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E+VGP +S EL R G + V + +A+L+Y+W+RF FA+GAI + D+ TLG Sbjct: 657 VFRRVEVVGPGVSGELTRAGSLAVAAAVLAVLLYVWLRFGRRFAVGAIVATLHDVLLTLG 716 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F L GIEFNL ++AA+LT++ YS++D +V+YDR+R+N+ Y + LID SIN+TL Sbjct: 717 FLVLTGIEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRY-RRMPLSVLIDTSINQTL 775 Query: 770 GRSVYTSMAAFISVLPMAVWGG-SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R+V T++ ++++ + ++GG ++ SF+ + FG++V SSI++A P+L+ Sbjct: 776 SRTVLTAVTTLLALVALYLFGGSGLVQSFSATLIFGVLVGTVSSIYVAGPLLILFNRRNN 835 Query: 829 K 829 + Sbjct: 836 R 836 >gi|307317056|ref|ZP_07596497.1| protein-export membrane protein SecD [Sinorhizobium meliloti AK83] gi|306897144|gb|EFN27889.1| protein-export membrane protein SecD [Sinorhizobium meliloti AK83] Length = 858 Score = 390 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 275/841 (32%), Positives = 460/841 (54%), Gaps = 20/841 (2%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +P+ IL ++ GL ALPN L + L +P+ +P ++ LGLDLRGGSH+VL+V Sbjct: 3 RLSPFKNILIWLVVLAGLAFALPNLLSREQLADWPTWLPHRQVPLGLDLRGGSHIVLKVS 62 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 +D V LQ D + L++ I + + D+ D + + Sbjct: 63 REDIVAERLQSTIDTIADALRQADIRYTGLSGSGQGLQFRLRDAMKAPAARDALKALVAP 122 Query: 122 VN-SKLNVDPKKNLLVTTT--EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 V L + + L+ + + + L+ ID +S A+ QS+E++R+R+ ++ Sbjct: 123 VRQGGLFGNSIQELVYEESATSDTLRLRLTDEGIDLRVSDAVAQSIEVVRRRVGEVIAVV 182 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK-------KGFMFGVR 231 I+R G R+ +Q+PG +P RL+ LLG ++ + + V Sbjct: 183 PIIERRGGDRLSVQVPGLDEPQRLKDLLGQRGDVALKWLDSSMPAQQAVDTRPPAGSEVL 242 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + D YLVE + + A FDP T +PVV+ A R + + Sbjct: 243 YSLDDPPIPYLVERRAFAAAPDFVEAQPGFDPATSEPVVNARIAAGAAARVAPFLQSDPR 302 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K A+VLDG+V++ V++ A+ +ISGN + + A LAA++RAG LP+ L ++EER Sbjct: 303 KQFAIVLDGQVISTSVLDGALSGDAVRISGNLSEDGANDLAALMRAGPLPVSLTVIEERT 362 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG + G+D++ G A + + + MI YG +G+VA ++ +NV+L +A+LS+ GAT Sbjct: 363 VGPEDGADAVANGLTAGLIAAIAVAACMIGFYGFFGVVAVIAVIVNVVLIIAVLSVTGAT 422 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 LTLP IAGI+L IG+AVDSN+L+ ER+REE + + +LD GF R +I D+N+T Sbjct: 423 LTLPGIAGIILTIGIAVDSNVLIYERLREEARTSGKPLRRALDDGFERVLRSIVDANLTI 482 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530 IA +L + G GA+RGFA+T+ + + ++ TA S+ R ++ R + + + + Sbjct: 483 FIAGAILLYLGSGAIRGFAVTLAIGSVTTILTAHSLTRRLIRGWYRRRLPQRLPRGIRTG 542 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPV 589 FF D +FM R + S+ S+ LL + GLN G DF+GG + + A Sbjct: 543 FFSRAD---FRFMAIRNPVFILMTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVA 599 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 D + +R+ L+ L +GD+ + ++ LVR+ Q A+ + +V+ ++ + Sbjct: 600 DGADIRARLDELNLGDVQVEELGSARDVLVRIPSQEAGDNAEQTAVGLVRSELED---QY 656 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E+VGP +S EL R G + V + +A+L+Y+W+RF FA+GAI + D+ TLG Sbjct: 657 VFRRVEVVGPGVSGELTRAGSLAVAAAVLAVLLYVWLRFGRRFAVGAIVATLHDVLLTLG 716 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F L GIEFNL ++AA+LT++ YS++D +V+YDR+R+N+ Y + LID SIN+TL Sbjct: 717 FLVLTGIEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRY-RRMPLSVLIDTSINQTL 775 Query: 770 GRSVYTSMAAFISVLPMAVWGG-SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R+V T++ ++++ + ++GG ++ SF+ + FG++V SSI++A P+L+ Sbjct: 776 SRTVLTAVTTLLALVALYLFGGSGLVQSFSATLIFGVLVGTVSSIYVAGPLLILFNRRNN 835 Query: 829 K 829 + Sbjct: 836 R 836 >gi|86357460|ref|YP_469352.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium etli CFN 42] gi|86281562|gb|ABC90625.1| protein-export translocase protein [Rhizobium etli CFN 42] Length = 846 Score = 389 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 295/834 (35%), Positives = 464/834 (55%), Gaps = 19/834 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W +L ++ ++IA PN L ++ P + +R+ LGLDL+GGSH+VL+V Sbjct: 2 LHFSRWKTLLIWLVAFAAVVIAAPNLLSEAQRASLPDWLRHDRVVLGLDLQGGSHIVLKV 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + D L+ +R+ L+ GI + +++ D + D++ Sbjct: 62 ERSDIAKDRLEEAVANVRNALRGAGIRYTGLTGNDRTVSVRITDPAETQKAVDRLKSLTT 121 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + E ++++ +S I ++ A +S++I+ +RI G Sbjct: 122 TGRDSAPGLALQEG----GEGQLALQISDAGITADVASARARSLDIVGRRIAGFGYGNFL 177 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234 ++ G RI++Q+ G D RL+ LL AK+SFH + + S + + G Sbjct: 178 VRPEGDDRIIVQVLGSVDAERLKNLLNQPAKLSFHLIDESISGQEALNGRWPATSQVLYS 237 Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 D YLV+ + ++ DP+T + D G +R EVT NIGK Sbjct: 238 LDDPPVPYLVDRTAFANAGNMVDIQPVVDPQTQDTSIAYRLDAEGTKRLAEVTGQNIGKH 297 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+V D +V++APVI+ AI +G+ +IS NF+ + LA MLRAG+LP L VEER+V Sbjct: 298 LAIVFDDQVMSAPVIDAAITNGEGRISANFSEDGVRDLAVMLRAGALPATLTSVEERSVS 357 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 G+DSI+ G A + +VL+ MI LY G++A S+F N+IL +A LSL GATLT Sbjct: 358 PTFGADSIFSGLVAGLIAVVLVAALMIALYRILGVIAIVSLFFNLILIIAALSLAGATLT 417 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGIVL +G+AVDSN+L+ ERIREE + S ++ GFSRA++TI D+N+T IA Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFADAVGRGFSRAFATIVDANVTIFIA 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 ++LFF G ++RGFA+T+ + IL ++FTA ++ R+++ + + + + L+ Sbjct: 478 AIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARGHPRHLPKSFLTH--- 534 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592 + + I+FM R + S S+ ++ T GL GIDF GG L V A + D++ Sbjct: 535 LFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLLEVTAKQGTADIA 594 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 +RS L L +G++ + G N +R+ Q G A+ + +V+ ++ + Sbjct: 595 DLRSRLNDLNLGEVGVEGTGGPANARIRIASQGGGENAEQSAVTLVRGELE---TDYDFR 651 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E+VGP IS EL +GV + A+L+YIWIRF+W FA+GAI + D+ LG F Sbjct: 652 RVEVVGPAISGELTMMATLGVAAALAAILLYIWIRFEWQFAVGAIIATLHDVVIILGLFV 711 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L GIEFNLT++AAVLT++GYS+ND VVVYDRMR+N++ Y + LID SIN+TL R+ Sbjct: 712 LTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLERYRK-MPLPILIDASINQTLSRT 770 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 V T+ +++L + ++GG V+ SF+ M G+ + + SSI+IAAP+L+ Sbjct: 771 VLTAATTLLALLALYLFGGDVVRSFSFTMLLGVALGSFSSIYIAAPVLIVFRLR 824 >gi|332994351|gb|AEF04406.1| Acriflavin resistance protein [Alteromonas sp. SN2] Length = 866 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 306/856 (35%), Positives = 495/856 (57%), Gaps = 32/856 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + ++Y+++ +GLL A PN LP S+ P ++ +SLGLDL+GGSHL+LE Sbjct: 1 MTRFSFRGLVYALVILLGLLSAAPNMLPDSLKQHVPQWYSQHTLSLGLDLQGGSHLLLEA 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADK----- 114 D D L YS L S L+++ I + + ++ + + Sbjct: 61 DTDALFARQLDTYSSALFSDLREQNIRYVKHTSKHALAVQFTLSNPDDLYKVKQRAKEVS 120 Query: 115 VTLFLQGVNSKLNVDPKKNLL----VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170 + + ++ I + L++ V+ AI +S+E++R+R Sbjct: 121 LQSDGSSALLITKQGITQQGTAPKGISQKGNVIDLTLTEKYQAAVVKDAINRSLEVVRKR 180 Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230 +D+ G++E ++ R GS IL+Q+PG DP+ ++ LLGTTA+M FH + Sbjct: 181 LDETGLTEPSVTRQGSDAILVQMPGISDPASVKALLGTTAQMRFHWQTQVKNS-----ES 235 Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 D +G QYL+E V + G H+ A A F P+T +PVV D GAR+F +T++NI Sbjct: 236 FTRADINGRQYLLEKHVALEGEHITDAAAVFSPETSQPVVTFRLDNDGARQFATMTKNNI 295 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 G+ LAVVLD V+TAPVIN IP G+ +I+G+FT+ A +A MLR G+LP+ L+I+EER Sbjct: 296 GRVLAVVLDDTVVTAPVINSVIPGGRGEITGSFTMSEAQDVALMLRTGALPVPLHIIEER 355 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG DLGSD+I G + +AG + +++FM+ +YG+WG +A ++ +N+ L +L+L GA Sbjct: 356 TVGPDLGSDAIETGVKSGIAGALGVLVFMVGIYGRWGAIASVALTVNMALVFGVLTLFGA 415 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAG++L +G+AVD+NIL+NERIREE +K + +L +GF +A+ TI DSN T Sbjct: 416 TLTLPGIAGLILTMGMAVDANILINERIREETKKGRPAGSALKIGFDKAFGTIVDSNFTT 475 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530 LIA +LF FG G V+GFA+T+ + ++ S+FT++++ + +M K + Sbjct: 476 LIAVSLLFVFGSGPVKGFAVTIAIGLITSLFTSVALTKLLMQRA-TRKHQREPINLSSPL 534 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + F++++ + +S++ ++CS+ F GL YG+DF GG + + A + + Sbjct: 535 LTMADKLGPFNFLKSKKIALSVSLILTLCSMAFFFKPGLQYGVDFTGGTMMEISAPQ-LS 593 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS--------------VAQTRVLE 636 +R+ L+ DI+ Q + E +L+R + Q +E Sbjct: 594 TEQLRTVLKQHHFEDIAIQEYGAENQYLLRAPVSEQSNTVPIAEANAGSSTVATQGSNIE 653 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 +K+ I + ++VGPK+S I+ ++I+ ML Y+W +F+ +FA A Sbjct: 654 ALKQVIQDADSTVIFNKVDVVGPKVSDGFADLSILALLIAGGGMLAYLWFQFEAHFATAA 713 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 + T++LD+TKT+GF AL GIEFNLTAVAA+L LIGYS+NDKVVV DR+R+ +++ S Sbjct: 714 LLTVLLDLTKTIGFIALTGIEFNLTAVAALLALIGYSINDKVVVLDRVRELLRISPER-S 772 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 D+I++++N TL R+V+TS+ +++LPMA+ GG + SFA+PM F +V+ SS++FI Sbjct: 773 LADIINEAVNSTLSRTVFTSLTTLLALLPMALVGGDAVSSFAVPMVFAVVIGTSSTLFIT 832 Query: 817 APILLFIYDWRAKNAR 832 + +L + R + + Sbjct: 833 SSLLHMLGKRREQKGK 848 >gi|150396393|ref|YP_001326860.1| bifunctional preprotein translocase subunit SecD/SecF [Sinorhizobium medicae WSM419] gi|150027908|gb|ABR60025.1| protein-export membrane protein SecD [Sinorhizobium medicae WSM419] Length = 858 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 269/841 (31%), Positives = 457/841 (54%), Gaps = 20/841 (2%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +P+ IL ++ G ALPN L + L +P+ +P ++ LGLDL GGSH+VL+V+ Sbjct: 3 RFSPFKNILIWLVVLAGFACALPNLLSREQLADWPTWLPHRQVPLGLDLSGGSHIVLQVN 62 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 +D V L D + L++ I + + D + + Sbjct: 63 REDIVAERLHSTIDAIADALRQADIHYTGLSGSGRSLQFRLRDGTKAPAAREALKALSAP 122 Query: 122 VNSKLNVDPKKNLLV---TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 V LV + T + + L+ ID +S A+ +S+E++R+R+ ++ Sbjct: 123 VQQDGLFGKSIQELVYEESATNDTLRLRLTDEGIDFRVSAAVARSVEVVRRRVGEVIAVA 182 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL-------PNNSKKGFMFGVR 231 +I+R + R+ +Q+PG +P RL+ LL ++ + +++ V Sbjct: 183 PSIERRENDRLSVQVPGLDEPQRLKDLLAQRGDVALRWLDLSMPAQQAVDTRPPAASEVL 242 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + D YLVE + + A FDP T +PVVD+ R + + + Sbjct: 243 YSLDDPPIPYLVERRAFAAAPDFVEAQPGFDPATAEPVVDVRIAAGATERIAPILQSDPR 302 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K A+VLDG+V++ V++ A+ +ISGN + + A LAA++RAG LP+ L ++EER Sbjct: 303 KQFAIVLDGQVISTSVLDSAVSGDAVRISGNLSEDGANDLAALIRAGPLPVSLTVIEERT 362 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG + G+D++ G A + + + MI YG +GLVA ++ +NV+L +A+LS+ GAT Sbjct: 363 VGPEDGADAVANGLTAGLIAALAVAACMIGFYGFFGLVAVVAVIVNVVLIIAVLSVTGAT 422 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 LTLP IAGI+L IG+AVDSN+L+ ER+REE ++ + +LD GF R +I DSN+T Sbjct: 423 LTLPGIAGIILTIGIAVDSNVLIYERLREEARSSDKPLRRALDDGFERVLRSIVDSNLTI 482 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530 IA V+L G GA GFA+T+ + L ++ TA S+ R ++ R ++ + + Sbjct: 483 FIAGVILLSLGSGAFSGFAVTLAVGSLTTILTAHSLTRRLIRGWYRRRRPHRLPRGIRTG 542 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPV 589 FF D +FM R + S+ S+ LL + GLN G DF+GG + + A Sbjct: 543 FFSRAD---FRFMAIRNPVFILMTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVA 599 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 D + +R+ L+ L +G++ + ++ L+R+ Q A+ + +V+ ++ + Sbjct: 600 DRADIRARLDELNLGEVQIEELGSARDVLIRIPSQEAGDNAEQTAVGLVRAELEDQYDF- 658 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + +VGP +S EL R G + + + +++L+Y+W+RF FALGA+ + D+ TLG Sbjct: 659 --RRVAVVGPGVSGELTRAGSLALAAAVLSVLLYVWLRFGRRFALGAVVATLHDVLLTLG 716 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F L GIEFNL ++AA+LT++ YS++D +V+YDR+R+N+ Y + LID SIN+TL Sbjct: 717 FLGLTGIEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRY-RRMPLSVLIDTSINQTL 775 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R+V TS+ ++++ + ++GGSV+ +F+ + FG++V SSI++A P+L+ + Sbjct: 776 SRTVLTSLTTMLALVALYLFGGSVLVQTFSATLIFGVLVGTVSSIYVAGPLLILFNRRNS 835 Query: 829 K 829 + Sbjct: 836 R 836 >gi|227821944|ref|YP_002825914.1| bifunctional preprotein translocase subunit SecD/SecF [Sinorhizobium fredii NGR234] gi|227340943|gb|ACP25161.1| protein-export membrane protein SecD [Sinorhizobium fredii NGR234] Length = 855 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 278/841 (33%), Positives = 459/841 (54%), Gaps = 25/841 (2%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + +P L ++ G ALPN +P+ L +P+ +P ++ LGLDL+GGS +VL+VD Sbjct: 3 KFSPLKNTLIWLVVLAGFAFALPNIIPREQLAGWPAWLPHRQVPLGLDLQGGSDIVLKVD 62 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D V L+ + L+ IG + +I D+ + Sbjct: 63 RDSLVADRLEATIAAIARALRDADIGYTGLSGSGQEIQFRLRDASKSAAARAALAALTAP 122 Query: 122 VNSKLNVDPKKNL-----LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 V + D + T+ ++ + + L+ ID +S A+ Q+ E++R+RI ++ Sbjct: 123 VEA--PDDTGSPVRELIADETSGQEPLRLRLTDEGIDFRLSAALTQATEVVRRRIGEVVA 180 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-- 234 E I+R G R+ IQ+PG +DP RL+ LLG ++F + + + + Sbjct: 181 VEPVIRRRGDDRLSIQIPGLEDPQRLKDLLGQRGNLAFRWLDSSMPPQQALDTQPPAASE 240 Query: 235 -----DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 D YLVE + +S A DPKT +PVVD+ ++R + + Sbjct: 241 ILYSLDDPPVPYLVERQALVSTPDFADAQPGLDPKTGEPVVDLKLTADSSQRIASLLQSA 300 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + A+VLDG+V++ P + I A++S + + E A AA+LRAG LP+ L ++EE Sbjct: 301 SRRQFAIVLDGQVVSTPALGDVIEGDTARLSADLSEEGAEDFAALLRAGPLPVSLTVIEE 360 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R VG ++G+D+I G A + + MI YG +GLVA ++ +NV+L +A+LSLLG Sbjct: 361 RTVGPEVGTDAIATGLKAGLVAAAAVAFCMIGFYGFFGLVAVIAVIVNVVLIIAVLSLLG 420 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNI 468 TLTLP IAGI+L IG+AVDSN+L+ ER+REE ++ + +LD GFSR ++IFD+N+ Sbjct: 421 ITLTLPGIAGIILTIGVAVDSNVLIYERLREEVRSSSEPLRKALDNGFSRVLTSIFDANL 480 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +LF G GA+RGFA T+ + + ++ TA S+ R ++ R ++ K + Sbjct: 481 TMLIAGAMLFL-GTGAIRGFAATLAIGSVTTILTAHSLTRRLIRGWYRRRRPKHLPRGIR 539 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN-R 587 + F I+FM R + S+ S+ LL + GLN G DFKGG L + + Sbjct: 540 TGF---FAEADIRFMALRNPVFILMASLSLASLVLLVSLGLNMGADFKGGSLLELRSKAG 596 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 D++ +R+ L+ L + ++ Q ++ L+R+ Q A + +V+ ++ + Sbjct: 597 AADVADLRARLDELNLAEVQIQELGSARDILLRIPSQEAGDNADQTAMGLVRAELED--- 653 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + E+VGP +S EL R G + V + +A++ Y+W+RF W FA GA+ T + D+ T Sbjct: 654 DYIFRRVEVVGPAVSGELTRAGTLAVAAAILAIIFYVWLRFDWKFAAGAVITTLNDVLLT 713 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +GF + GIEFNL ++AA+LT++ YS+ND +VVYDR+R+N+ Y + LID SIN+ Sbjct: 714 MGFLVVTGIEFNLASLAALLTIVCYSLNDTMVVYDRVRENLARY-RRMPLSVLIDTSINQ 772 Query: 768 TLGRSVYTSMAAFISVLPMAVWG-GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ T++ ++++ + ++G V+ SF+ + FG+V+ SSI+IA P+L+ Sbjct: 773 TLSRTILTAITTALALVALYLFGESRVVQSFSATLLFGVVIGTISSIYIAGPVLILFNRR 832 Query: 827 R 827 Sbjct: 833 N 833 Score = 97.8 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 +L GI L +A ++ IG +V+ V++Y+R+R+ ++ ++S R +D + L Sbjct: 416 LSLLGITLTLPGIAGIILTIGVAVDSNVLIYERLREEVR--SSSEPLRKALDNGFSRVLT 473 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ I+ M G I FA +A G V ++ + ++ Y R Sbjct: 474 SIFDANLTMLIA-GAMLFLGTGAIRGFAATLAIGSVTTILTAHSLTRRLIRGWYRRRRPK 532 >gi|295135617|ref|YP_003586293.1| bifunctional preprotein translocase subunit SecD/SecF [Zunongwangia profunda SM-A87] gi|294983632|gb|ADF54097.1| bifunctional preprotein translocase subunit SecD/SecF [Zunongwangia profunda SM-A87] Length = 996 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 203/801 (25%), Positives = 352/801 (43%), Gaps = 43/801 (5%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 V+ + + LR + K G+ +++++ N +I + ++ I + + Q Sbjct: 184 VDESITSAFEVLRKRIDKFGVTQPNIQRLGNSGRILVELPGAKDVNRIQNLLQSTAQLEF 243 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ- 182 + + + + + + V+S+ + +Q+ I + S + Sbjct: 244 WHVFKNTEFGGFLAQANQVLKNVVSEEEKATEVIDTTKQTDSDIDDLLADAEDSTAVQTN 303 Query: 183 ---------RLGSHRILIQLPGEQDPSRLRQLLGTTA--KMSFHKVLPNNSKKGFMFGVR 231 ++ QD +++ L + + G Sbjct: 304 NPLFDLVIGPGAQGGPVLAYFNVQDTAKVNSYLSMPQVRNLLPAEQRYARFVWGVPDDET 363 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + E++ +SG + A +D V + Sbjct: 364 NATGLYALKSNRENQPPLSGSVITDAQQTYDQVGRVAVSMQMDGTGAKIWEEMTGYASNN 423 Query: 292 KPLAVVLDGRVLTAPVIN--QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + ++ V+ + AI G+++I+G+F+IE LA +LRAG LP I+ Sbjct: 424 QTQIAIVLDNVVYSAPGVSTGAISGGRSEITGDFSIEEGKDLANVLRAGKLPASAEIISS 483 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 VG LG ++I G + LVL++L+MI YGK GL AD ++ +N++ +L+ LG Sbjct: 484 EIVGPSLGQEAIDSGMLSFGIALVLVLLWMIFYYGKAGLFADVALIVNILFIFGILAGLG 543 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 A LTLP IAGIVL IG++VD+N+L+ ERI+EE K +S S+ GFS A S+I D+NIT Sbjct: 544 AVLTLPGIAGIVLTIGMSVDANVLIFERIKEELAKGKSQAESIKDGFSNALSSILDANIT 603 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529 + +L G G ++GFA T+ + I S+FTAI I R + + K Sbjct: 604 TGLTGFILLILGTGPIKGFATTLLIGIATSLFTAIFITRLFIDGYGKNGKSLEFATGITK 663 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F F+ R IS + + S+ L T LN G+DF GG V ++ V Sbjct: 664 NLFKGM---NTDFLGKRKVAYIISGILIVISLGSLLTQQLNLGVDFVGGRTYTVRFDQDV 720 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKKKIT- 643 + V++ LE + + N+ + + D Q + E ++ + Sbjct: 721 SPTEVQNILEERFGNAEAKTFGPNNQLKITTNYKIEEEGTAIDEEIQEGLFESLQPYLPG 780 Query: 644 ----------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692 I + VGP I+ ++ V+ S I + +YI +RF+ W F Sbjct: 781 DLSEDEFINGSSDKTVGIMESMKVGPTIAEDIKAASFWAVLGSLIVVFLYILLRFRKWQF 840 Query: 693 ALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 +LGA+ + D+ LG F+L F +E N +AA+LT+IGYS+ND VVV+DR+R+ Sbjct: 841 SLGAVVAVFHDVLIVLGVFSLLYKFMPFSLEINQAFIAAILTVIGYSLNDTVVVFDRIRE 900 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 + + T+ ++ ++N TL R++ TS+ + +L + ++GG I F + G+V Sbjct: 901 YVNEH-TTWKLGKTVNAALNSTLSRTLNTSLTTLVVLLAIFIFGGESIRGFMFALIVGVV 959 Query: 807 VAASSSIFIAAPILLFIYDWR 827 V SSIFIA P++ + Sbjct: 960 VGTYSSIFIATPVMFDSVKKK 980 Score = 137 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 51/355 (14%), Positives = 116/355 (32%), Gaps = 10/355 (2%) Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G GA G + + + + + + ++ Sbjct: 309 LVIGPGAQGGPVLAYFNVQDTAKVNSYLSMPQVRNLLPAEQRYARFVWGVPDDETNATGL 368 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 A++ R + S++ G ++ + + Sbjct: 369 YALKSNRENQPPLSGSVITDAQQTYDQVGRVAVSMQMDGTGAKIWEEMTGYASNNQTQIA 428 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 + + + G + + +++ ++EIV Sbjct: 429 IVLDNVVYSAPGVSTGAISGGRSEITGDFSIEEGKDLANVLRAGKLPASAEI--ISSEIV 486 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + +E I G++ I+ + +L+++ + L A LI++I G A G Sbjct: 487 GPSLGQEAIDSGMLSFGIALVLVLLWMIFYYG-KAGLFADVALIVNILFIFGILAGLGAV 545 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG SV+ V++++R+++ + S + I + L + ++ Sbjct: 546 LTLPGIAGIVLTIGMSVDANVLIFERIKEELA---KGKSQAESIKDGFSNALSSILDANI 602 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ + + G I FA + GI +S+F A I D KN + Sbjct: 603 TTGLTGFILLILGTGPIKGFATTLLIGIA----TSLFTAIFITRLFIDGYGKNGK 653 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 96/215 (44%), Gaps = 13/215 (6%) Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96 + ++ GLDL+GG +++L++ +D + G D + E S+ + Sbjct: 77 NTAKDKELNKGLDLKGGINVILQISVEDIIRGLANDSKDPAFNKALTE-AREESVTSQDD 135 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 I + F + L + N ++ + ++ ++ + + Sbjct: 136 YIDIFFEKFDAIPDA------KLASPDIFANKTLSDDITYDMSNDQVKPII-----RRKV 184 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 +I + E++R+RID+ G+++ IQR S RIL++LPG +D +R++ LL +TA++ F Sbjct: 185 DESITSAFEVLRKRIDKFGVTQPNIQRLGNSGRILVELPGAKDVNRIQNLLQSTAQLEFW 244 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 V N GF+ + + ++ +V + Sbjct: 245 HVFKNTEFGGFLAQANQVLKNVVSEEEKATEVIDT 279 >gi|163786107|ref|ZP_02180555.1| protein-export membrane protein SecD/SecF [Flavobacteriales bacterium ALC-1] gi|159877967|gb|EDP72023.1| protein-export membrane protein SecD/SecF [Flavobacteriales bacterium ALC-1] Length = 1015 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 210/825 (25%), Positives = 364/825 (44%), Gaps = 51/825 (6%) Query: 49 DLRGGSHLVLEVD-EDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN--KITLS 101 DLR + D + + + LR+ + G+ +++++ N +I + Sbjct: 178 DLRDIVEFDMSDDEVKGIIETKIDESIVSAFEVLRNRIDGFGVSSPNIQRLGNSGRILIE 237 Query: 102 FADSRFKENIADKVTLFLQGVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 ++ K+ + D +T Q + + + + + ID+V Sbjct: 238 LPGAKDKKRVVDIITKTAQLQFWETYKDQEVLPYIGQVNNAMVAAAAEKPEAIDEVEEAL 297 Query: 160 IEQS------MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK-- 211 +EQ E+ Q + R ++ ++ + T Sbjct: 298 VEQDSTANAIDELTGQIATDSTDVVDSNPIGYQGRGGHPSVIGMFLTKDKEKIMTALNNP 357 Query: 212 ----MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 + ++ G + + +++ +SG + A FDP + Sbjct: 358 KNRALLPAEMRYVKFAWGVQKKDSEFVELYAIKTNRDNQPPLSGAVITDARQEFDPVNNP 417 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA---IPSGKAQISGNFT 324 V + + N ++ ++ + I G++QISG+F+ Sbjct: 418 AVGMAMNAKGAKIWEEMTKKANEEDGNIAIVLDNIVYSAPGVSQVGGISGGRSQISGSFS 477 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 + A LA +LRAG LP IV+ VG LG ++I G + + L ++L+MI YG Sbjct: 478 LTEAVDLANVLRAGKLPASAEIVQADEVGPSLGQEAIDSGMKSFLIALTFVLLWMIFYYG 537 Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444 K G+ AD ++ N++L +L+ LGA LTLP IAGIVL IG++VD+N+L+ ERIREE K Sbjct: 538 KAGIFADVALLFNILLIFGVLASLGAVLTLPGIAGIVLTIGISVDANVLIFERIREELAK 597 Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504 +S S+ GFS A S+I D+NIT + ++LF FG G ++GFA T+ + IL S+FTAI Sbjct: 598 GKSQKESIKDGFSNALSSILDANITTGLTALILFVFGTGPIKGFATTLIIGILTSLFTAI 657 Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564 I R ++ + + + I I F++ R IS + + S+ L Sbjct: 658 FITRLLIDWWVNRGGKLDFSTTMTK---GLFKNININFLKKRKIAYVISGILILASLGSL 714 Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQY 623 FT GL+ GIDF GG V +PV + V+ +L ++ + + + Sbjct: 715 FTTGLDQGIDFVGGRTYQVRFEQPVSVEEVKGDLNAVFNSAEVKTIGGDNQLKISTKYKV 774 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG---------------PKISRELIRK 668 + V + + + +P + G P I+ ++ + Sbjct: 775 EDNSVETDEEVQSKLFGALQKYLPDGMTYPEFVDGSGDAKIGKMLSSKVSPTIADDIKKS 834 Query: 669 GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721 + V+ S + + +YI RF KW F+LGA+ + D+ LG F+L F +E + Sbjct: 835 SLWAVLGSLVVVFLYILFRFKKWQFSLGAVAAVFHDVLIVLGIFSLTWKFMPFSMEIDQA 894 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 +AA+LT+IGYS+ND VVV+DR+R+ + + TS F I+ S+N TL R++ TS+ + Sbjct: 895 FIAAILTVIGYSLNDTVVVFDRIREFLNEH-TSWEFDKTINASLNSTLSRTLNTSVTTLV 953 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +L M +G + + G+VV SS+FIA P++ Sbjct: 954 VLLAMFAFGADSLRGLLFALIIGVVVGTYSSMFIATPLMYDTAKK 998 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 82/177 (46%), Gaps = 4/177 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + VGP + +E I G+ +I+ +L+++ + + A L+ +I G A Sbjct: 501 QADEVGPSLGQEAIDSGMKSFLIALTFVLLWMIFYYG-KAGIFADVALLFNILLIFGVLA 559 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G L +A ++ IG SV+ V++++R+R+ + S ++ I + L Sbjct: 560 SLGAVLTLPGIAGIVLTIGISVDANVLIFERIREELA---KGKSQKESIKDGFSNALSSI 616 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + ++ ++ L + V+G I FA + GI+ + ++IFI ++ + + K Sbjct: 617 LDANITTGLTALILFVFGTGPIKGFATTLIIGILTSLFTAIFITRLLIDWWVNRGGK 673 Score = 57.8 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 12/183 (6%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 N + LGLDL+GG + ++++ D + G D + + K + Q S Sbjct: 97 NAMKLGLDLKGGINAIIQISVKDILKGLSNNSKDPIFN--KALEDAEELQKDAQESYLES 154 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 F D + + + + + +V + + I+ I +I Sbjct: 155 FF------RAFDAIKGDTKLASPDIFANRDLRDIVEFDMSDDEVKGI---IETKIDESIV 205 Query: 162 QSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 + E++R RID G+S IQR S RILI+LPG +D R+ ++ TA++ F + + Sbjct: 206 SAFEVLRNRIDGFGVSSPNIQRLGNSGRILIELPGAKDKKRVVDIITKTAQLQFWETYKD 265 Query: 221 NSK 223 Sbjct: 266 QEV 268 >gi|328953548|ref|YP_004370882.1| protein-export membrane protein SecD [Desulfobacca acetoxidans DSM 11109] gi|328453872|gb|AEB09701.1| protein-export membrane protein SecD [Desulfobacca acetoxidans DSM 11109] Length = 888 Score = 375 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 261/866 (30%), Positives = 426/866 (49%), Gaps = 59/866 (6%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 ++ +L ++ +++ LP+ P D + + K LGLDL+GG HL+L+V Sbjct: 2 LKKIRLKFLLLFVLTIASIILMLPSVTPHLP-DWYKQYIWKEGFRLGLDLKGGMHLILQV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D D V L + +L+ +K G+ + +T + + + V Sbjct: 61 DMDQAVQNNLTIQGQDLKELAEKRGLDLQVGLPHAGVLTANLVKADEQSAFNQLVKEEFS 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + K + ++ L + ++ + QS+E+IR RIDQ G++E Sbjct: 121 QLEVKG-------STRQGSGVVYTLALRPQVVTELQDNTRSQSLEVIRNRIDQFGVTEPV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--- 237 I G +I++QLPG QDP R L+G TA++ F V ++ Sbjct: 174 IVPQGDDQIVVQLPGLQDPQRAMDLIGQTAQLEFKLVDDSHGLNLEELIDEASARGRLKP 233 Query: 238 -----------------------------------GNQYLVEDKVEISGIHLNGATANFD 262 LV+ K ++G + A Sbjct: 234 GYTREELNLALAGKLPPDTEVYIEKSIDRATGSIKRIPLLVQKKALMTGAAVKSAAVRIG 293 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 +P V + F GAR+F ++T N+ + LA++LDG V +AP I + I GKAQI+G Sbjct: 294 DYN-EPYVSVDFSSSGARQFGQITGANVNRRLAIILDGVVRSAPTIKERIGGGKAQITGA 352 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 +T E A LA +LRAG+LP + IV+ VG LG DSI+KG A V G L++ FMI Sbjct: 353 YTSEEAHDLAIVLRAGALPASVRIVQNITVGPTLGLDSIHKGVVAGVIGTFLVIGFMIFY 412 Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 Y GLVA++++ LN+I+ L LSL+ ATLTLP IAGI+L IG+AVDSN+L+ ER+REE Sbjct: 413 YRLSGLVANYALILNIIMLLGALSLVHATLTLPGIAGIILSIGMAVDSNVLIYERMREEF 472 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 + + +D G+ +A+ TI DS++T LI V LF FG G +RGFA+T+ + +++++FT Sbjct: 473 HAGKPLKAGVDGGYDKAFLTIVDSHVTTLITAVALFLFGTGPIRGFAVTLSVGVILNLFT 532 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 A+ R + ++I + + ++ + F+ R + V +S L + Sbjct: 533 ALFGTRVVYDYLIFKRWLTNLSF------LEVFRKTHFDFIGFRKYTVVVSGLLCALGLV 586 Query: 563 LLFT---HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 N G++F GG + A++P + VR L G Q D +V Sbjct: 587 AFIQLSRGHGNLGVEFAGGAMVQFKADKPFTVEAVRDALNQKGWGHAEIQPTDAGGGLMV 646 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 +L+ L ++ + + +I+ T +G +S++L + I+ ++IS I Sbjct: 647 KLKKSEESVGKMADELAVIFNQ-SLSGNHFSIEGTSEIGASVSKDLRKWAIIAIVISLIG 705 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 +++Y+ RF++ F + A D+ LG F L E L V A+LTL GYS+ D VV Sbjct: 706 IIVYLAWRFEFVFGVAAAIATFHDVLAVLGIFYLLDKEITLLVVTALLTLAGYSLTDTVV 765 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799 V+DR+R+N+ T + +I+ S+NE L R++ T+ F+ VL + ++GG VI FA+ Sbjct: 766 VFDRIRENLAK--TRDNLGKIINLSVNEVLSRTIVTTTTVFLVVLALFIFGGVVIQDFAL 823 Query: 800 PMAFGIVVAASSSIFIAAPILLFIYD 825 M G+++ SSIF+A+PI+ Sbjct: 824 AMLLGVIIGTYSSIFVASPIIHAWRK 849 >gi|261415266|ref|YP_003248949.1| protein-export membrane protein SecD [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371722|gb|ACX74467.1| protein-export membrane protein SecD [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325439|gb|ADL24640.1| protein-export membrane protein SecDF [Fibrobacter succinogenes subsp. succinogenes S85] Length = 870 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 211/829 (25%), Positives = 383/829 (46%), Gaps = 46/829 (5%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDF-----VNGFLQMYSDELRSFLKKEGIGVFSMR- 92 + ++ GLDL GG+ + L++D+ + + +R+ + + G+ + Sbjct: 48 LSSRSVNFGLDLAGGTSITLQIDQSGLKDGDDIKDIQAQSLEIIRNRVDQYGLSEPQISP 107 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 ++I + A V + L K +V ++ ++ + Sbjct: 108 TGDDRIVVELAGVDDS-TAKALVGSTAKLEFKILAESEKFTQVVGLIDQYLTRQTTDIIA 166 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP------------- 199 D + +++ D+ ++ + + + + Sbjct: 167 DSAKTDSVKTDSVKKEALSDEELLAGGVAKAETAEKKDSAVAEAAPADVVGQSLSSFFIS 226 Query: 200 ------------SRLRQLLGTTAKMSFHKVL-PNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 ++++LL T G R YL++ + Sbjct: 227 YGNGGFIAEESVEKVKKLLATEGVQKLIPRDVAFAFGSGLEKLRRDANIKAKRLYLLKRR 286 Query: 247 VEISGIHLNGATANFDPKTH---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303 E+ G + A + V++ F +G ++F VT N+GK +A+VLD +V+ Sbjct: 287 AEMGGDDITDARPYRVSDGMSAGEVAVNLKFGGIGPKKFSAVTAANVGKQMAIVLDNQVI 346 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 +APVI IP+G+AQI+G + A LA +L+AG+L + I+E R+VGA LG ++I + Sbjct: 347 SAPVIRDRIPNGEAQITGLDDMAEANRLAVVLKAGALKAPMQIIESRSVGATLGEENIVQ 406 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G + GL+L ++FM+ Y G +A + +N ++T A++S+ ATLTLP IAG +L Sbjct: 407 GFGSGAIGLLLCLVFMVAYYRLGGFIASIGVMINALVTAAVMSVFNATLTLPGIAGFILV 466 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+++D+N+++ ERIREE + + ++ G+ RA+S I DSN+T ++ ++L+ G G Sbjct: 467 VGMSLDANVIIYERIREELKNGLTARAAVAKGYERAFSAILDSNLTTVLTGLILYKIGTG 526 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543 +V+GF +T+ + IL S+F AI++ RA++ + + + ++ I F + + M Sbjct: 527 SVKGFGLTLTIGILTSLFCAITVSRAVLDWRLAKRDRTTLSIG---SGFKALNNANLPLM 583 Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 + R +S + I SI + G ++ IDF GG + V + S Sbjct: 584 KNRGKFKVLSWILIIASIACIAVKGFDFSIDFTGGQVYTIQYQDDVKHETDLNKALSKAG 643 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663 + G + GD T + K I + VGP I + Sbjct: 644 IQGARVRSLGGTSANSYQISVRGDD---TSFELAMAKAFEAANQKCQIVAKDAVGPTIGK 700 Query: 664 ELIRKGIVGVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNL 720 EL I+ VII+ + + +Y+W RF F + A+ LI D TLGF + F + F+ Sbjct: 701 ELRFNAILSVIIAWLCIALYVWFRFGKLGLGFGVAAVLGLIHDTIITLGFISAFSLSFDG 760 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 +A++LT+IGYSVND +V +DR+R+N L+ + + I+ S+N+ R+V TS+ Sbjct: 761 ALIASLLTMIGYSVNDTIVNFDRIRENTALFGS-AKYEQTINSSLNQCFSRTVITSLTTL 819 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + +AV GGS I F + FGI++ SS+ + +PI+L+ K Sbjct: 820 FVCVVLAVKGGSSIRDFGLVQCFGILIGTYSSVCVCSPIVLWWSKKFKK 868 >gi|225010583|ref|ZP_03701054.1| protein-export membrane protein SecD [Flavobacteria bacterium MS024-3C] gi|225005412|gb|EEG43363.1| protein-export membrane protein SecD [Flavobacteria bacterium MS024-3C] Length = 980 Score = 372 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 196/800 (24%), Positives = 361/800 (45%), Gaps = 37/800 (4%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 ++ + + LR + G+ ++++ N +I + ++ D ++ Q Sbjct: 185 IDESIVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGAKDIARAQDLLSSTAQLEF 244 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + +++ + + A E + D + ++ + Sbjct: 245 WETYPPNNQDIASFFVAANERLKSLVVTEKETQKPASEIDSLLADVAQDSLANQQNPLID 304 Query: 184 LGSHR---ILIQLPGEQDPSRLRQLLGTTA--KMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 L + +D + + L ++ + + Sbjct: 305 LIRGQGQGYETFKFSVRDTATVGAYLRMKEIRRLIPASLANVKFVWERPSANSEVVGLYA 364 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD-NIGKPLAVV 297 + ++ ISG ++ A +FD + V + N +A+V Sbjct: 365 LKSNRDNTPRISGDVVSDARDDFDQFSRPAVSMTMNTKGAKEWEKLTGDAFNNQTGIAIV 424 Query: 298 LDGRVLTAPVINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 LD +V TAP ++ G+++I+G+FT+ ++ +LRAG LP I++ VG L Sbjct: 425 LDNKVYTAPGVSSGPISGGRSEITGSFTVNETKDISNVLRAGKLPASAEIIQSEIVGPSL 484 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G ++I G + +VL++L+MI+ YG+ GL AD ++ LN++L +L L A LTLP Sbjct: 485 GQEAIDSGFNSFSLAMVLVLLWMILYYGRAGLFADIALLLNIVLIFGVLVSLNAVLTLPG 544 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL IG++VD+N+L+ ERI+EE K + ++ GFS A S+I D+NIT + ++ Sbjct: 545 IAGIVLTIGMSVDANVLIFERIKEELAKGKGKAIAIADGFSNALSSILDANITTGLTAII 604 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 LF FG G ++GFA T+ + I+ S+FTAI I R ++ K + + Sbjct: 605 LFVFGSGPIKGFATTLLIGIITSLFTAIFITRLLIDGYTAKKSAS--LDFNTAITKNLFK 662 Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I F+ R +S F + S+ LFT GL G+DF GG V + V+ S + S Sbjct: 663 QPNINFLGKRTIAYAVSGAFVLVSLGSLFTQGLQQGVDFIGGRSYTVRFEQAVNPSELSS 722 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQ------PGDSVAQTRVLEMVKKKITEIVPLST 650 L + + + + + + Y+ D+ Q + ++K + Sbjct: 723 ELSDVFGTGTNVKTYGEDNQVKITTAYKVDVEGIEVDNEIQNSLYTSLQKYLPAGTSYED 782 Query: 651 I-----------QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698 + VGP I+ ++ + ++ S + + +YI +RF+ W F+LGA+ Sbjct: 783 FIVGDGSGTVGIMQSSKVGPTIADDIKNNAFLAILGSLLVVFLYILLRFRKWQFSLGAVI 842 Query: 699 TLILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 + D+ LG F+L G +E + +AA+LT+IGYS+ND VVV+DR+R+ + Sbjct: 843 AVFHDVLIVLGIFSLLGKYMPFNMEIDQAFIAAILTVIGYSLNDTVVVFDRIREIIAE-- 900 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 + + ++N TL R++ TS+ + +L + ++GG + F M G++V SS Sbjct: 901 KGWKSGENTNLALNSTLSRTLNTSLTTLVVLLSIFIFGGESLRGFMFAMIIGVLVGTYSS 960 Query: 813 IFIAAPILLFIYDWRAKNAR 832 +FIA PI+ + ++ + Sbjct: 961 LFIATPIMFDFLKKKVQSGK 980 Score = 65.1 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 20/191 (10%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 K ++ GLDL+GG ++ L++ D + G + + + K + + + Sbjct: 79 AKKKELNKGLDLKGGINVTLQISVKDILKGLANNSKNPVFN--KALADADNASKSSDDTY 136 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 + + + I+ +S + + ++S Sbjct: 137 -------------LNLFFESFDAIKGDTKLADPSIFANKALSDAINFQMSDDEVRPILSQ 183 Query: 159 AIEQSM----EIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 I++S+ E++R+RID G+++ IQR S RIL++LPG +D +R + LL +TA++ Sbjct: 184 KIDESIVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGAKDIARAQDLLSSTAQLE 243 Query: 214 FHKVLPNNSKK 224 F + P N++ Sbjct: 244 FWETYPPNNQD 254 >gi|332521577|ref|ZP_08398030.1| protein-export membrane protein SecD [Lacinutrix algicola 5H-3-7-4] gi|332042666|gb|EGI78866.1| protein-export membrane protein SecD [Lacinutrix algicola 5H-3-7-4] Length = 1005 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 220/800 (27%), Positives = 361/800 (45%), Gaps = 49/800 (6%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123 ++ + LR+ + + G+ +++++ +I + + E +T Q Sbjct: 187 IDESINSALQVLRTRIDQFGVASPNIQRLGTSGRILVELPGVKDVERAKALITGTAQLEF 246 Query: 124 SK------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI------EQSMEIIRQRI 171 L E+E ++ + + + + + E Sbjct: 247 WFAMKADGLYQYMSDVNAFLKNEQEAAVTATDSTAVEADEAEEADDLIGDLTGETDETTT 306 Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA--KMSFHKVLPNNSKKGFMFG 229 + ++ + D ++ +L + G Sbjct: 307 VVNPFLDLVKGPGYQGGPILGMFNITDKQKVLDILNRREIKSLLPANAKEAKFVFGKPEK 366 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 L Q ++ +SG ++ VV + D G+R + E+T Sbjct: 367 DSELIALYALQGNRDNVPPLSGS--IDDARQDYNLANQVVVSMQMDAKGSRIWEEMTTKA 424 Query: 290 I--GKPLAVVLDGRVLTAPVINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 G +A+VLD V +AP IN G +QISG+FT+ A LA +LRAG LP K I Sbjct: 425 YKEGSQIAIVLDNLVYSAPGINNGPIAGGSSQISGDFTVNEAIDLANVLRAGKLPAKATI 484 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 ++ VG LG ++I GT + L L++++M YGK GL AD ++ LN++L +LS Sbjct: 485 IQSDEVGPTLGQEAIDSGTMSFGIALALVLIWMFFYYGKAGLFADIAMLLNILLIFGVLS 544 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 +GA LTLP IAGIVL IG++VD+N+L+ ERIREE K + ++ GFS A S+I D+ Sbjct: 545 GIGAVLTLPGIAGIVLTIGMSVDANVLIFERIREELAKGKDQKSAIKDGFSNALSSILDA 604 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 NIT + ++LF FG G ++GFA T+ + I S+FTAI I R ++ + Sbjct: 605 NITTGLTALILFVFGTGPIKGFATTLLIGIGTSLFTAIFITRLLVDWYANKGGKLDFSTG 664 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 F I I F++ R IS + + S+ LFT+GL+ G+DF GG V + Sbjct: 665 ITKNLFR---NINIAFLKKRKTAYIISAVLIVGSLASLFTNGLDEGVDFVGGRTYQVRFD 721 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 +PV S + + L + + GE N L D + EM + + Sbjct: 722 QPVSASEITATLSDAAVFGSADAKTFGEDNQLKITTKHRIDEATEEADEEMRQTLFNALQ 781 Query: 647 PLSTIQNTEIV-----------------GPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688 P + P I+ ++ + V+ S I + +YI RF Sbjct: 782 PHLNGMDYAAFISNAEGKTAGLMKKYKVSPTIADDIKKASFWAVLGSLIVVFLYILFRFK 841 Query: 689 KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 +W F+LGA+ + D+ LG F+L F +E + +AA+LT+IGYS+ND VVV+D Sbjct: 842 RWQFSLGAVAAVFHDVLIVLGVFSLTYKFMPFSMEIDQAFIAAILTVIGYSLNDTVVVFD 901 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ + T F +IDKS++ TL R++ TS+ + +L + ++GG I F + Sbjct: 902 RIREFFNEH-TDWDFDRVIDKSLSSTLSRTLNTSLTTLVVLLAIFIFGGESIRGFMFALI 960 Query: 803 FGIVVAASSSIFIAAPILLF 822 G++V SS+FIA PI+ Sbjct: 961 VGVIVGTYSSLFIATPIMYD 980 Score = 149 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 59/362 (16%), Positives = 126/362 (34%), Gaps = 7/362 (1%) Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 T ++ + G G G + M I R + + K Sbjct: 304 TTTVVNPFLDLVKGPGYQGGPILGMFNITDKQKVLDILNRREIKSLLPANAKEAKFVFGK 363 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + A+Q R + SI + L ++ +D KG + + Sbjct: 364 PEKDSELIALYALQGNRDNVPPLSGSIDDARQDYNLANQVVVSMQMDAKGSRIWEEMTTK 423 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + N ++ + A + K+ Sbjct: 424 AYKEGSQIAIVLDNLVYSAPGINNGPIAGGSSQISGDFTVNEAIDLANVLRAGKLPAKAT 483 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 I ++ VGP + +E I G + I+ +LI+++ + L A ++L+I Sbjct: 484 ---IIQSDEVGPTLGQEAIDSGTMSFGIALALVLIWMFFYYG-KAGLFADIAMLLNILLI 539 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G + G L +A ++ IG SV+ V++++R+R+ + + I + Sbjct: 540 FGVLSGIGAVLTLPGIAGIVLTIGMSVDANVLIFERIREELA---KGKDQKSAIKDGFSN 596 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 L + ++ ++ L + V+G I FA + GI + ++IFI ++ + + Sbjct: 597 ALSSILDANITTGLTALILFVFGTGPIKGFATTLLIGIGTSLFTAIFITRLLVDWYANKG 656 Query: 828 AK 829 K Sbjct: 657 GK 658 Score = 58.9 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 22/181 (12%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS-FLKKEGIGVFSMRQIQNKIT 99 +N + LGLDL+GG +L+V D + G D + + L+ + + Sbjct: 83 ENSMKLGLDLKGGLEAILQVSVKDILKGLANNSKDPVFNKALEDADELQKNSQNDY---- 138 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN----NIDQV 155 + + + + E EI + S+ I + Sbjct: 139 ------------IEDFYTSFDAIKGDKKLSSPDIFATRSLEDEIRMDSSEEDVKRVITRK 186 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 I +I +++++R RIDQ G++ IQR S RIL++LPG +D R + L+ TA++ F Sbjct: 187 IDESINSALQVLRTRIDQFGVASPNIQRLGTSGRILVELPGVKDVERAKALITGTAQLEF 246 Query: 215 H 215 Sbjct: 247 W 247 >gi|325287196|ref|YP_004262986.1| protein-export membrane protein SecD [Cellulophaga lytica DSM 7489] gi|324322650|gb|ADY30115.1| protein-export membrane protein SecD [Cellulophaga lytica DSM 7489] Length = 999 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 191/809 (23%), Positives = 361/809 (44%), Gaps = 46/809 (5%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123 ++ ++ + LR + G+ ++++ +I + ++ K + ++ Q Sbjct: 186 IDESVESAFEVLRERIDGFGVTQPNIQREGTSGRILVELPGAKDKARAQELLSSTAQLEF 245 Query: 124 SKLNVDPKKNLLVTTTEKEISI-----VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + N++ + + D E + D + ++ Sbjct: 246 WETYPKNDPNVMQFINAANEKLRSLVDTKTATAEDTESKPESEIDSLLSDVTQDSLDVAS 305 Query: 179 -----STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF--MFGVR 231 + + + + +D +++ + L + K + Sbjct: 306 QINPLGDLIKGIPNSFAVAEFAIKDTAKVNEYLNMPEIKRLIPNAIQHVKFAWERPSKGS 365 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + + ++ ++SG ++ A A FD V + + + N+ Sbjct: 366 EVVGLFALKGNRDNTPKMSGDVVSAARAQFDQFNRPAVGMDMNVKGAKQWQKFTSEVNLN 425 Query: 292 KPLAVVLDGRVLTAPV---INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 + V+ + + I G +ISG+FTI +A +LRAG LP + +I++ Sbjct: 426 QTGIAVVLDNRVYTAPGCSVVGGISGGSTEISGDFTITETKDIANVLRAGKLPARADIIQ 485 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 VG LG +SI G + + + L++++MI YGK G+ AD ++ LN++L +L L Sbjct: 486 SEVVGPSLGHESINSGLMSFLIAMALVLVWMIFYYGKAGVAADIALLLNILLIFGVLVSL 545 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 A LTLP IAGIVL IG++VD+N+L+ ERI+EE K + ++ GF A S+I D+NI Sbjct: 546 DAVLTLPGIAGIVLTIGMSVDANVLIFERIKEELAKGKGQSLAISDGFGNALSSILDANI 605 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T + ++LF FG G ++GFA T+ + I S+FTAI + R + + Sbjct: 606 TTGLTAIILFIFGSGPIKGFATTLLIGIATSLFTAIFVTRLFIE--GYTGAKGKVLEFCT 663 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + ++I F++ R S + ++ L T GL G+DF GG V ++ Sbjct: 664 GLTRNLFKNLSINFLKKRKIAYIFSGALIVIALFSLLTTGLQQGVDFVGGRTYQVRFDQS 723 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG------DSVAQTRVLEMVKKKI 642 V+ S + SNL + + + F + ++ Y+ D Q ++ ++ + Sbjct: 724 VNTSEISSNLTEIFGSGTNVKTFGEDNQIMITTSYKVDAEDIAVDEEIQEKLFTSLQNLL 783 Query: 643 TE------------IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689 I ++ VGP I+ ++ + + ++ S + +YI RF+ Sbjct: 784 PSGLTLEEFNNGGTEDVSIGILKSKKVGPTIADDIKKNAVWAILGSLFVVFLYILFRFRK 843 Query: 690 WYFALGAITTLILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 W F+LGA+ + D+ LG F+L G +E + +AA+LT+IGYS+ND VVV+DR Sbjct: 844 WQFSLGAVVAVFHDVLVVLGVFSLLGKVMPFNMEIDQAFIAAILTVIGYSLNDTVVVFDR 903 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 +R+ +K S D + ++N TL R++ TS+ + +L + ++GG + F M Sbjct: 904 IREIVKE--RGWSSGDNVGLALNSTLSRTLNTSLTTLVVLLAIFIFGGESLRGFMFAMII 961 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G++V SS+FIA P++ R ++ + Sbjct: 962 GVIVGTYSSLFIATPVMFDTLKKRIQSGK 990 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 11/191 (5%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 K ++ GLDL+GG ++ L++ D ++G + + FLK + + Sbjct: 79 AKKKELNKGLDLKGGINVTLQIKIKDILSGLANNTKNPV--FLKSLEDADEASKSSDKTY 136 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 F ++ + ++ K+L + S ++ I + I Sbjct: 137 VDLFFEAFDA--------NKGDTKLASPDIFFTKSLSEEIKTMDASDEEVKSIIRKKIDE 188 Query: 159 AIEQSMEIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 ++E + E++R+RID G+++ IQR S RIL++LPG +D +R ++LL +TA++ F + Sbjct: 189 SVESAFEVLRERIDGFGVTQPNIQREGTSGRILVELPGAKDKARAQELLSSTAQLEFWET 248 Query: 218 LPNNSKKGFMF 228 P N F Sbjct: 249 YPKNDPNVMQF 259 >gi|120437081|ref|YP_862767.1| bifunctional preprotein translocase subunit SecD/SecF [Gramella forsetii KT0803] gi|117579231|emb|CAL67700.1| protein-export membrane protein SecD [Gramella forsetii KT0803] Length = 1000 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 196/809 (24%), Positives = 360/809 (44%), Gaps = 46/809 (5%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 ++ + + LR + K G+ +++++ N +I + ++ + + + Q Sbjct: 184 IDESITSAFEVLRKRIDKFGVTQPNIQRLGNSGRILVELPGAKDISRVKNLLQSTAQLEF 243 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQN---NIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + + + + ++ + + ++ S A EI D +E Sbjct: 244 WHVYKNNEIGNFLVQANNKLIEMKRSEGAASEEETDSTATSGDSEIDELLADAEDSTEVE 303 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK------------GFMF 228 +++ + P + TAK+ + P G Sbjct: 304 TGNNPLFDLIVSPGYQGGPVIANFKVQDTAKVMDYIQNPQIRSLLPSEMRYAKFVWGVPD 363 Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + + +SG + A +D V + Sbjct: 364 EDTETAGLYALKGNRNMEPPLSGSVITDAQQTYDQLGRIAVSMQMDGTGAKIWEDMTGKA 423 Query: 289 NIGKPLAVVLDGRVLTAPVIN--QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + ++ ++ + AI G+++ISG+F+I LA +LRAG LP +I Sbjct: 424 SNEQSQIAIVLDNIVYSAPGVSTGAISGGRSEISGDFSITEGQDLANVLRAGKLPASADI 483 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 ++ VG LG ++I G + L+L++++MI+ YGK GL AD ++ +N++ +L+ Sbjct: 484 IQSEVVGPSLGQEAIDSGINSFGIALILVLIWMILYYGKAGLFADVALVVNILFIFGILA 543 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LGA LTLP IAGIVL IG++VD+N+L+ ERI+EE K + ++ GF+ A S+I D+ Sbjct: 544 GLGAVLTLPGIAGIVLTIGMSVDANVLIFERIKEELAKGKVQKDAIKDGFNNALSSILDA 603 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 NIT + ++LF G G ++GFA T+ + I S+FTAI I R + K + Sbjct: 604 NITTGLTGLILFLLGTGPIKGFATTLLIGIATSLFTAIFITRLFIDGYGIKGKSLDFTTS 663 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 F I F++ R +S LF + S+ L T GLN G+DF GG V Sbjct: 664 LTKNLFTNM---NIDFLKKRKVAYVVSGLFIVISVGSLLTQGLNEGVDFVGGRTYTVRFA 720 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKKK 641 V+ + V+++L + + + + V + D Q + E + Sbjct: 721 NDVNPTEVQNDLVATFGSAEAKTFGPDNQLKITTKYKVDEEGAEVDEEIQKSLYESLNSY 780 Query: 642 IT-----------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689 + + + + VG I+ ++ V+ S I + +YI +RF+ Sbjct: 781 LPADITYEEFIDGDDDKQVGVMKSMKVGATIADDIKNASFWAVLGSLIVVFLYILLRFRK 840 Query: 690 WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 W F+LGA+T + D+ LG F+L F +E + +AA+LT+IGYS+ND VVV+DR Sbjct: 841 WQFSLGAVTAVFHDVLVVLGIFSLLYKVMPFNMEIDQAFIAAILTVIGYSLNDTVVVFDR 900 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 +R+ + + TS ++ ++N T+ R++ TS+ + +L + ++GG I F + Sbjct: 901 IREYVNEH-TSWPLGKTVNAALNSTISRTLNTSLTTLVVLLAIFIFGGESIRGFMFALIV 959 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G++V SS+FIA P++ ++ + Sbjct: 960 GVIVGTYSSLFIATPVMFDSVKKKSSIQK 988 Score = 64.3 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 17/195 (8%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQNK 97 ++ GLDL+GG +++L++ D ++G D R + + ++ Sbjct: 79 AKDKELNKGLDLKGGINVILQISVRDILSGLANDTRDPAFRKAIAEADEAQTDSQENYID 138 Query: 98 ITLS-FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 + F + + + V N L+ + N+ E I + I Sbjct: 139 LFFESFNNIPDAKLASPDV-----FANKTLSDEVNFNMSNEEVEPVIR---------KKI 184 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 +I + E++R+RID+ G+++ IQR S RIL++LPG +D SR++ LL +TA++ F Sbjct: 185 DESITSAFEVLRKRIDKFGVTQPNIQRLGNSGRILVELPGAKDISRVKNLLQSTAQLEFW 244 Query: 216 KVLPNNSKKGFMFGV 230 V NN F+ Sbjct: 245 HVYKNNEIGNFLVQA 259 >gi|86141199|ref|ZP_01059745.1| putative protein-export transmembrane SecDF protein [Leeuwenhoekiella blandensis MED217] gi|85831758|gb|EAQ50213.1| putative protein-export transmembrane SecDF protein [Leeuwenhoekiella blandensis MED217] Length = 1004 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 209/816 (25%), Positives = 368/816 (45%), Gaps = 49/816 (6%) Query: 58 LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKV 115 +E V + + LR+ + K G+ ++++ Q++I + + E + ++ Sbjct: 177 VEPILAKEVEESINSAFEVLRNRIDKFGVTQPNIQRLDNQSRILIELPGATDIERVKFQL 236 Query: 116 TLFLQGVN---------SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166 Q + + L E +++ + + +IE+ + Sbjct: 237 ESTAQLEFYKTHYASEVAPYLLQVNAELKELVAPAEEEEAVAEVDSSESTDDSIEELLAS 296 Query: 167 IRQRIDQIGISESTIQR--------LGSHRILIQLPGEQDPSRLRQLLGTT--AKMSFHK 216 I + + + ++ +D + + + A++ Sbjct: 297 EEDSISPAQANNPLFEVFSFNPAIQQYAQAPVVGYAQVKDTATINRYFAMPEIARLRPQG 356 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV-VDISFD 275 + + G G + Q + G + + + V +D Sbjct: 357 LRFAKFRWGITEGETDVVPLYALQSDRSGSPAMDGDVVQDSRQQYTQAGQPSVGIDFEGQ 416 Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335 G G +A+VLDG V +A I G +ISG+FT+ A LA +L Sbjct: 417 GPGQWAKLTGEVATEGNTIAIVLDGTVYSAASAKAEIKGGATEISGSFTVTEAQDLANVL 476 Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395 +AG LP I+ VG LG ++I G + V LVL++++M+ YGK GL AD ++ Sbjct: 477 KAGKLPASAKIISYDVVGPSLGQEAINSGLMSFVIALVLVLIWMVFYYGKAGLFADVALA 536 Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455 +N++ +L+ LGA LTLP IAGIVL IG++VD+N+L+ ERI+EE K +S ++ G Sbjct: 537 VNILFIFGVLAGLGAVLTLPGIAGIVLTIGMSVDANVLIFERIKEEIAKGKSQKDAIKDG 596 Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 FS A S+I D+NIT + ++LF FG G ++GFA T+ + I S+FTAI + R + Sbjct: 597 FSNALSSILDANITTFLTALILFLFGTGPIQGFATTLMIGIGTSLFTAIFVTRLFIDGYG 656 Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575 + K + F+ R IS + + S+ LFT+GL+ G+DF Sbjct: 657 KNGKSLQFSTGATRN---LFTNFNRDFLAKRKIAYIISGVLIVVSLISLFTNGLDQGVDF 713 Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVA 630 GG V PV+ + V L + + + + + + + D Sbjct: 714 VGGRNYTVRFENPVNATEVEQKLIAELESAQAKTYGEANQLKITTKYRIDEEASEVDDDI 773 Query: 631 QTRVLEMVKKKITEIVPLSTIQN------------TEIVGPKISRELIRKGIVGVIISAI 678 Q ++ ++ + + + VGP I+ ++ + V+ S + Sbjct: 774 QQKLFTALQSYLPSDLTFTQFVKGGSTEDKVGILEYNKVGPTIADDIKKDSFWAVLGSLV 833 Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIG 731 + +YI +RF+ W F+LGA+ + D+ LG F+L F +E + + +AA+LT+IG Sbjct: 834 VVFLYILLRFRRWQFSLGAVAAVFHDVLIVLGIFSLTYQFMPFNMEIDQSFIAAILTVIG 893 Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791 YS+ND VVV+DR+R+ MK Y TS +I+++IN T+ R++ TSM I +L + ++GG Sbjct: 894 YSLNDTVVVFDRIREFMKEYGTSRKMGLIINQAINSTISRTLNTSMTTLIVLLAIFIFGG 953 Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + I F + G++V SSIFIA P++ + Sbjct: 954 ASIMGFMFALIVGVLVGTYSSIFIATPVMFDTIQKK 989 Score = 55.1 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 106/297 (35%), Gaps = 21/297 (7%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 + ++ GLDL+GG + +LE+ D + G +D + + + QN Sbjct: 79 AKEKELNKGLDLKGGMNAILEISVADILRGLSNDSTDPAFNQ--ALDQAAEAQKDSQNSF 136 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 F D+ +K+ N+ L N+ E + + + Sbjct: 137 LEDFFDAFEAIPGDNKLASPDIFANTTLGEKVNFNMTNDEVEPIL---------AKEVEE 187 Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 +I + E++R RID+ G+++ IQR RILI+LPG D R++ L +TA++ F+K Sbjct: 188 SINSAFEVLRNRIDKFGVTQPNIQRLDNQSRILIELPGATDIERVKFQLESTAQLEFYKT 247 Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 + +++ V + A + T + ++ E Sbjct: 248 H---------YASEVAPYLLQVNAELKELVAPAEEEEAVAEVDSSESTDDSIEELLASEE 298 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334 + + + APV+ A A I+ F + L Sbjct: 299 DSISPAQANNPLFEVFSFNPAIQQYAQAPVVGYAQVKDTATINRYFAMPEIARLRPQ 355 >gi|86132653|ref|ZP_01051246.1| protein-export membrane protein SecD [Dokdonia donghaensis MED134] gi|85816895|gb|EAQ38080.1| protein-export membrane protein SecD [Dokdonia donghaensis MED134] Length = 992 Score = 366 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 198/806 (24%), Positives = 357/806 (44%), Gaps = 53/806 (6%) Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQ 120 + + + + LR+ + K G+ +++ + + +I + ++ + + + Q Sbjct: 176 EGEIKETIGSAFETLRNRIDKFGVTQPNIQSLGDNGRILVELPGAKDIDRVRGLLEKTAQ 235 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + + + ++ + + + A+ Q + D + + Sbjct: 236 LEFYQTHYAGE---VLNYLVGANETLRTLVAASEKKEAAVAQDSTLDDNVSDLLKDVDEE 292 Query: 181 IQRLGSHRILIQLPG-----------------EQDPSRLRQLLGTTAKMSFHKVLPNNSK 223 + + +D + + L A + +K Sbjct: 293 EEEQDFGPLFKVFSPNQQAVQMSSIPTVGFAAVKDTATINSYLRNPAVIKQRPASLRYAK 352 Query: 224 KGF--MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281 + + + + + G +N + F +P V + F+ G + Sbjct: 353 FAWGVPEEGADIVGLYALESNRQGAPYMDGDVVNDSRQQFTQTQ-QPSVGLDFEGQGVNQ 411 Query: 282 FFEVTRDNI--GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339 + ++TR+ G +A+ LDG V +A Q I G +ISGNFT+ +A LA +L AG Sbjct: 412 WAKLTREVAQKGNAIAIALDGNVYSAATARQEIKGGSTEISGNFTVASAQDLATVLNAGK 471 Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399 LP I++ +G LG ++I G + + L L++++M+ YGK G AD ++ +N++ Sbjct: 472 LPASAKIIQAEEIGPSLGQEAINSGILSFLIALSLVLIWMVFYYGKAGGFADIALVVNIL 531 Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459 +L+ LGA LTLP IAGIVL IG++VD+N+L+ ERI+EE RK +S ++ GF+ A Sbjct: 532 FIFGVLAGLGAVLTLPGIAGIVLTIGMSVDANVLIFERIKEEIRKGKSQKDAIKDGFNNA 591 Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519 S+I D+NIT + ++LF FG G V+GFA T+ + I S+F AI I R + + K Sbjct: 592 LSSILDANITTFLTALILFLFGTGPVQGFATTLMIGIATSLFCAIFITRLFIDGYGKNGK 651 Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 + + F+ R IS + + + L T GL+ GIDF GG Sbjct: 652 SLEFATGMTKN---LFVNNNVDFLGKRKIAYAISGVLIVGGLAALLTGGLDAGIDFVGGR 708 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV- 638 V ++P++ V L + + + +E Sbjct: 709 TYTVRFDQPMNAQEVEDALVADFGSADVKTFGADNQLKITTKYRIDETGTDIDAQVEQQL 768 Query: 639 ---------------KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683 + +VGP I+ ++ + + VI S I + +Y Sbjct: 769 FTSLTPFLPSGMSYAAFAKSTDDKQVGKMEYYMVGPTIADDIKKGALFAVIGSLIVVFLY 828 Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALF------GIEFNLTAVAAVLTLIGYSVND 736 I +RF+ W F+LGA+ + D+ LG FA+F +E + +AA+LT+IGYS+ND Sbjct: 829 ILLRFRRWQFSLGAVAAVFHDVLLVLGVFAIFKNIMPFDMEVDQNFIAAILTVIGYSLND 888 Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 VVV+DR+R+ +K + ++ F LI++++N TL R++ TS+ I +L + G I Sbjct: 889 TVVVFDRIREYIKEHGSTRGFGKLINQALNSTLSRTLNTSVTTLIVLLAIFFLGAPSIRG 948 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLF 822 + G++V SS+FIA P++ Sbjct: 949 LMFALIVGVIVGTYSSLFIATPVMFD 974 Score = 52.4 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 14/180 (7%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 + ++ GLDL+GG +++L++ D + G +D +F+ + + QN Sbjct: 75 AKEKELNKGLDLKGGINVILQISIRDILGGLSNNSTDP--AFIAALDATDEAQKDSQNTY 132 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 F K QG +L +S ++ I Sbjct: 133 FEDFVTEFEK-----------QGGQLASPDIFANVVLEDKVNTGMSNSEVATVLEGEIKE 181 Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 I + E +R RID+ G+++ IQ + RIL++LPG +D R+R LL TA++ F++ Sbjct: 182 TIGSAFETLRNRIDKFGVTQPNIQSLGDNGRILVELPGAKDIDRVRGLLEKTAQLEFYQT 241 >gi|298208318|ref|YP_003716497.1| putative protein-export transmembrane SecDF protein [Croceibacter atlanticus HTCC2559] gi|83848239|gb|EAP86109.1| putative protein-export transmembrane SecDF protein [Croceibacter atlanticus HTCC2559] Length = 1001 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 189/815 (23%), Positives = 355/815 (43%), Gaps = 52/815 (6%) Query: 60 VDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIAD 113 + + + + LR + K G+ +++++ +I + ++ + I Sbjct: 174 AEVATVLKKKIDESIVSAFEVLRKRIDKFGVTQPNIQRLGESGRILVELPGAKDVDRIRT 233 Query: 114 KVTLFLQGVNSKLNVDPK--------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165 + Q V + T I ++ D + A + + Sbjct: 234 LLQSTAQLEFWDGLVGSNFGQFLVDADAYIKETQSTSTEIENAEQVTDSTETAAGDDLED 293 Query: 166 IIRQRIDQIGISESTIQ-------RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218 ++ + D ++ +I + +D +++ L + Sbjct: 294 LLAEENDSTEVASGNNPLLELIVAPGYQGGPVIAVFNAKDTAKVNSYLKKPQVKALLPAE 353 Query: 219 PNNSKKGFMFGVRFLRDS-DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 +K + + +++ E+SG + A ++ V + Sbjct: 354 QKYTKFLWGIEDENGLVQLYAVKGNRDNEPELSGGVVTDAAQVYNQAGQVAVSMQMNGKG 413 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAML 335 R + ++ V+ + + AI G+ +ISG+FT+ LA +L Sbjct: 414 AKIWEEMTGRAYQQQSTIAIVLDDVVYSAPSSTSGAISGGRTEISGSFTVAEGQDLANVL 473 Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395 RAG LP +I++ VG LG ++I G + V L+ ++++MI YG+ G AD ++ Sbjct: 474 RAGKLPASADIIQSEVVGPSLGQEAIDSGLMSFVIALLFVLVWMIFYYGRAGAYADVALV 533 Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455 +N++ +L+ LGA LTLP IAGIVL IG++VD+N+L+ ERIREE K +S S+ G Sbjct: 534 VNILFIFGILAGLGAVLTLPGIAGIVLTIGISVDANVLIFERIREELAKGKSQKDSIKDG 593 Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 F+ A S+I D+NIT + ++L FG G ++GFA T+ + I S+FTAI I R + Sbjct: 594 FNNALSSILDANITTGLTGLILLVFGTGPIKGFATTLLIGIATSLFTAIFITRLFIDGYG 653 Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575 + K + + + F++ R IS + LFT GL+ G+DF Sbjct: 654 KNGKSLAFSTPITK---KWFQNVNVNFLKKRKIAYVISAAIIAVGLGSLFTQGLDQGVDF 710 Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRV 634 GG V ++ VD + + +L + + + + + + + + Sbjct: 711 VGGRTYTVRFDKDVDANEIEQDLIATFESAEAKTLGANNQLKITTKYKVEETSTEVDNEI 770 Query: 635 LEMVKKKITEIVPLSTIQ---------------NTEIVGPKISRELIRKGIVGVIISAIA 679 EM+ + + +P + V P I+ ++ + + V+ S + Sbjct: 771 QEMLYNSLKQNLPQGMTYEDFKQESSDKEAGLMSNYKVSPTIADDIKQASVWAVLGSLLV 830 Query: 680 MLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGY 732 + +YI +RF +W F+LGA+ + D+ LG F+L F +E + +AA+LT+IGY Sbjct: 831 VFLYILLRFRRWQFSLGAVAAVFHDVLIVLGIFSLTYKFMPFNMEIDQAFIAAILTVIGY 890 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 S+ND VVV+DR+R+ +I+ +++ TL R++ TS+ I +L + ++ + Sbjct: 891 SLNDTVVVFDRIREYFNENEQ-WPMSKIINSALSSTLSRTLNTSLTTLIVLLAIFIF-AA 948 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + F + G+VV SS+FIA P++ R Sbjct: 949 PLRGFMFSLIIGVVVGTYSSLFIATPVMFDTVKKR 983 Score = 137 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 8/180 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 +E+VGP + +E I G++ +I+ + +L+++ + A L+++I G A Sbjct: 486 QSEVVGPSLGQEAIDSGLMSFVIALLFVLVWMIFYYG-RAGAYADVALVVNILFIFGILA 544 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G L +A ++ IG SV+ V++++R+R+ + S +D I N L Sbjct: 545 GLGAVLTLPGIAGIVLTIGISVDANVLIFERIREELA---KGKSQKDSIKDGFNNALSSI 601 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ ++ L + V+G I FA + GI +S+F A I D KN + Sbjct: 602 LDANITTGLTGLILLVFGTGPIKGFATTLLIGIA----TSLFTAIFITRLFIDGYGKNGK 657 Score = 63.9 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 64/347 (18%), Positives = 116/347 (33%), Gaps = 26/347 (7%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 ++ GLDL+GG +++L+V D + G D + L Sbjct: 81 DKELNKGLDLKGGINVILQVSVKDILRGLSNNSKDPAFNQ------------------AL 122 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL------SQNNIDQ 154 + AD K+ D + LFL+ N + + I + + Sbjct: 123 ANADEAQKDAQDDYIDLFLEAFNDIPDARLASPDIFANKTLSDEINFEMSNAEVATVLKK 182 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 I +I + E++R+RID+ G+++ IQR S RIL++LPG +D R+R LL +TA++ Sbjct: 183 KIDESIVSAFEVLRKRIDKFGVTQPNIQRLGESGRILVELPGAKDVDRIRTLLQSTAQLE 242 Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273 F L ++ F+ + + E A + D + Sbjct: 243 FWDGLVGSNFGQFLVDADAYIKETQSTSTEIENAEQVTDSTETAAGDDLEDLLAEENDST 302 Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA- 332 G E+ + V+ +N + + + + L Sbjct: 303 EVASGNNPLLELIVAPGYQGGPVIAVFNAKDTAKVNSYLKKPQVKALLPAEQKYTKFLWG 362 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 G + + N G AG V + + M Sbjct: 363 IEDENGLVQLYAVKGNRDNEPELSGGVVTDAAQVYNQAGQVAVSMQM 409 >gi|332292566|ref|YP_004431175.1| protein-export membrane protein SecD [Krokinobacter diaphorus 4H-3-7-5] gi|332170652|gb|AEE19907.1| protein-export membrane protein SecD [Krokinobacter diaphorus 4H-3-7-5] Length = 993 Score = 363 bits (930), Expect = 9e-98, Method: Composition-based stats. Identities = 201/803 (25%), Positives = 356/803 (44%), Gaps = 46/803 (5%) Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQ 120 + + + + LR+ + K G+ +++ + + +I + ++ + + + Q Sbjct: 176 EAEIKETIGSAFETLRNRIDKFGVTQPNIQSLGDNGRILVELPGAKDIDRVRGLLEKTAQ 235 Query: 121 GVNSKL------------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME--I 166 + + + L+ + EK+ + V + +D +S ++ + E Sbjct: 236 LEFYQTHYAGDALNYLIGANETLRGLVASNEEKQEAAVAQDSTLDDNVSDLLKDADEEEA 295 Query: 167 IRQRIDQIGISESTIQ-RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225 + I Q S + +D + + L + + +K Sbjct: 296 EQDFGPLFKIFSPNQQAVQNSTIPTVGFAAVKDTATINSYLRNPSVVKQRPASLRYAKFA 355 Query: 226 F--MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV-VDISFDEMGARRF 282 + + + + + G +N + F V +D + Sbjct: 356 WGVPEEGADIVALYALESNRQGAPYMDGDVVNDSRQQFTQTQQPAVGLDFEGQGVNQWAK 415 Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342 G +A+ LDG V +A Q I G +ISGNFT+ A LA +L AG LP Sbjct: 416 MTREVAQKGNAIAIALDGNVYSAASARQEIKGGATEISGNFTVAAAQDLATVLNAGRLPA 475 Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402 I++ +G LG ++I G + + L L++++M+ YGK G AD ++ +N++ Sbjct: 476 SAKIIQAEEIGPSLGKEAIDSGILSFLIALALVLVWMVFYYGKAGGFADIALVVNILFIF 535 Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462 +L+ LGA LTLP IAGIVL IG++VD+N+L+ ERI+EE RK +S ++ GF+ A S+ Sbjct: 536 GVLAGLGAVLTLPGIAGIVLTIGMSVDANVLIFERIKEELRKGKSQKDAIKDGFNNALSS 595 Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 I D+NIT + ++LF FG G V+GFA T+ + I S+F AI I R + + K Sbjct: 596 ILDANITTFLTALILFLFGTGPVQGFATTLMIGIATSLFCAIFITRLFIDGYGKNGKSLE 655 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + +I F+ R IS + + + L T GL+ GIDF GG Sbjct: 656 FATSMTKG---LFVNNSIDFLGKRKIAYAISGVLIVGGLAALLTGGLDTGIDFVGGRTYT 712 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV---- 638 V ++P++ V L + + + +E Sbjct: 713 VRFDQPMNAQEVEDALVADFGSADVKTFGADNQLKITTKYRIDETGTDIDAQVEQQLFTS 772 Query: 639 ------------KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 + +VGP I+ ++ + + VI S I + +YI + Sbjct: 773 LTPYLPTGMTYAAFAKSTDDKQVGKMEYYMVGPTIADDIKKGALFAVIGSLIVVFLYILL 832 Query: 687 RFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVV 739 RF+ W F+LGA+ + D+ LG FA+ F +E + +AA+LT+IGYS+ND VV Sbjct: 833 RFRRWQFSLGAVAAVFHDVLLVLGVFAVLKNIMPFDMEVDQNFIAAILTVIGYSLNDTVV 892 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799 V+DR+R+ +K + ++ F LI++++N TL R++ TS+ I +L + G I Sbjct: 893 VFDRIREYIKEHGSTRGFGKLINQALNSTLSRTLNTSVTTLIVLLAIFFLGAPSIRGLMF 952 Query: 800 PMAFGIVVAASSSIFIAAPILLF 822 + G++V SS+FIA P++ Sbjct: 953 ALIVGVIVGTYSSLFIATPVMFD 975 Score = 54.7 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 53/315 (16%), Positives = 108/315 (34%), Gaps = 14/315 (4%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 + ++ GLDL+GG +++L++ D + G +D +F+ + + QN Sbjct: 75 AKEKELNKGLDLKGGINVILQISIRDILGGLSNNSTDP--AFIAALDATDEAQKDSQNTY 132 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 F + QG +L + +S + ++ I Sbjct: 133 FEDFVSAFE-----------AQGGQLASPDIFANVILNEKVDTGMSNTEVASVLEAEIKE 181 Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 I + E +R RID+ G+++ IQ + RIL++LPG +D R+R LL TA++ F++ Sbjct: 182 TIGSAFETLRNRIDKFGVTQPNIQSLGDNGRILVELPGAKDIDRVRGLLEKTAQLEFYQT 241 Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 ++ G + + ++ + K Sbjct: 242 HYAGDALNYLIGANETLRGLVASNEEKQEAAVAQDSTLDDNVSDLLKDADEEEAEQDFGP 301 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337 + F + + V V IN + + ++ A + Sbjct: 302 LFKIFSPNQQAVQNSTIPTVGFAAVKDTATINSYLRNPSVVKQRPASLRYAKFAWGVPEE 361 Query: 338 GSLPIKLNIVEERNV 352 G+ + L +E Sbjct: 362 GADIVALYALESNRQ 376 >gi|319952078|ref|YP_004163345.1| protein translocase subunit secf;protein translocase subunit secd [Cellulophaga algicola DSM 14237] gi|319420738|gb|ADV47847.1| protein translocase subunit secF;protein translocase subunit secD [Cellulophaga algicola DSM 14237] Length = 992 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 205/802 (25%), Positives = 365/802 (45%), Gaps = 44/802 (5%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 ++ + + LR + G+ ++++ + +I + +R + ++ Q Sbjct: 185 IDESIISAFEVLRERIDGFGVTQPNIQREGSSGRILVELPGARDIARAQELLSSTAQLEF 244 Query: 124 SKLNVDPKKNLLVTTTEKEISI-----VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + +NL + V + + S ++ + ID Sbjct: 245 WETYRPDNQNLSQFLFAANERLKTLVEVEVPETVSKPESEIDSLLSDVAQDSIDFASEVN 304 Query: 179 STIQ---RLGSHRILIQLPGEQDPSRLRQLLGTTA--KMSFHKVLPNNSKKGFMFGVRFL 233 I +D +++ L ++ ++ + Sbjct: 305 PLISLLIPGEPGAQSFVRASTKDTAQISAYLKMPEIRRLVPKELQFVKFLWERPTEGAEI 364 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI-GK 292 Q ISG ++ A +FDP++ V + N+ G Sbjct: 365 VGLYALQSNRAATPRISGDVVSDARDDFDPRSRPAVTMSMNTRGAKEWQKLTSDANLNGT 424 Query: 293 PLAVVLDGRVLTAPVINQA--IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 +A+VLD +V TAP ++Q I G+++I+G+FTI +A +LRAG LP K IV+ Sbjct: 425 GIAIVLDNKVYTAPGVSQVGGISGGRSEITGSFTINETKDIANVLRAGKLPAKAEIVQSE 484 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG LG ++I G + +V ++++MI YG+ G AD ++ N++L +L+ + A Sbjct: 485 IVGPSLGQEAIDSGFNSFAIAMVFVLVWMIFYYGRAGAFADVALLFNILLIFGVLTSIKA 544 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 LTLP IAGIVL IG++VD+N+L+ ERI+EE K + ++ GFS A S+I D+NIT Sbjct: 545 VLTLPGIAGIVLTIGMSVDANVLIFERIKEEIAKGKGKSLAIADGFSNALSSILDANITT 604 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530 + V+LF FG G ++GFA T+ + IL S+FTAI I R ++ + + K K Sbjct: 605 GLTAVILFVFGSGPIKGFATTLIIGILTSLFTAIFITRLLIGWYLSAKDRK--LEFSTGL 662 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPV 589 + + I F+ R + S + + + LF G+DF GG V +PV Sbjct: 663 TKNLFKNVHINFLSKRKYAYIFSTVLIVIGLYSLFFGPGLQQGVDFLGGRSYQVRFEQPV 722 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ------PGDSVAQTRVLEMVKKKIT 643 + S + + L ++ + + + + ++ Y+ D+ Q ++ ++K Sbjct: 723 NPSEMSTELNAVFGTGTNVKTYGEDNQVMITTAYKVAVEGIEVDTEIQNKLFTTLQKYFP 782 Query: 644 E-----------IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691 + I +++ VGP I+ ++ +I S + +YI RF+ W Sbjct: 783 DGTSFSDFSVANDDKAIGIMSSKKVGPTIADDIKSNAFWAIIGSLAVVFLYILFRFRKWQ 842 Query: 692 FALGAITTLILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 F+LGA+ + D+ LG F++FG +E + +AA+LT+IGYS+ND VVV+DR+R Sbjct: 843 FSLGAVAAVFHDVLIVLGIFSIFGKIMPFNMEIDQAFIAAILTVIGYSLNDTVVVFDRIR 902 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 + + S + + ++N TLGR++ TS+ I +L + +GG + F M G+ Sbjct: 903 EIVAE--RGWSAGENTNLALNSTLGRTLNTSLTTVIVLLAIFAFGGDSLRGFMFAMIIGV 960 Query: 806 VVAASSSIFIAAPILLFIYDWR 827 VV SS+FIA P++ Sbjct: 961 VVGTYSSLFIATPVMFDTLKKS 982 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 54/373 (14%), Positives = 120/373 (32%), Gaps = 10/373 (2%) Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 A +I ++ + ++++ G A T + + + I R + + K Sbjct: 293 AQDSIDFASEVNPLISLLIPGEPGAQSFVRASTKDTAQISAYLKMPEIRRLVPKELQFVK 352 Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 + L V K Sbjct: 353 FLWERPTEGAEIVGLYALQSNRAATPRISGDVVSDARDDFDPRSRPAVTMSMNTRGAKEW 412 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 +L AN + + + +S + + ++ VL Sbjct: 413 QKLTSDANLNGTGIAIVLDNKVYTAPGVSQVGGISGGRSEITGSFTINETKDIANVLRA- 471 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 ++ + I +EIVGP + +E I G I+ + +L+++ + A Sbjct: 472 ----GKLPAKAEIVQSEIVGPSLGQEAIDSGFNSFAIAMVFVLVWMIFYYG-RAGAFADV 526 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 L+ +I G L +A ++ IG SV+ V++++R+++ + Sbjct: 527 ALLFNILLIFGVLTSIKAVLTLPGIAGIVLTIGMSVDANVLIFERIKEEIA---KGKGKS 583 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 I + L + ++ ++ + + V+G I FA + GI+ + ++IFI Sbjct: 584 LAIADGFSNALSSILDANITTGLTAVILFVFGSGPIKGFATTLIIGILTSLFTAIFITR- 642 Query: 819 ILLFIYDWRAKNA 831 +L+ Y Sbjct: 643 LLIGWYLSAKDRK 655 Score = 60.1 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 83/185 (44%), Gaps = 20/185 (10%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 K ++ GLDL+GG ++ L++ D + G S+ F + + + + Sbjct: 79 AKKKELNKGLDLKGGINVTLQISVKDILKGLANNTSNA--KFNEALANADAASKNSSDTY 136 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 D + + + + + I+ ++ + + +I Sbjct: 137 I-------------DLFFQAFENLKGDTKLASPEVFANKSLSDVINFQMTDDQVKPIIRT 183 Query: 159 AIEQSM----EIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 I++S+ E++R+RID G+++ IQR S RIL++LPG +D +R ++LL +TA++ Sbjct: 184 KIDESIISAFEVLRERIDGFGVTQPNIQREGSSGRILVELPGARDIARAQELLSSTAQLE 243 Query: 214 FHKVL 218 F + Sbjct: 244 FWETY 248 >gi|305664994|ref|YP_003861281.1| putative protein-export transmembrane SecDF protein [Maribacter sp. HTCC2170] gi|88707406|gb|EAQ99651.1| putative protein-export transmembrane SecDF protein [Maribacter sp. HTCC2170] Length = 990 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 191/808 (23%), Positives = 353/808 (43%), Gaps = 45/808 (5%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 ++ + + LR + G+ ++++ N +I + +R + ++ Q Sbjct: 185 IDESIVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGARDIARAQELLSSTAQLEF 244 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS--MEIIRQRIDQIGISESTI 181 + + + D + E+S ++ D + ++ Sbjct: 245 WETYEQNNPSFGSFIVAANERLKSIVKTDDAIEEPVKEESELDSLLSDATDSLDLASQVN 304 Query: 182 Q------RLGSHRILIQLPGEQDPSRLRQLLGTTA---KMSFHKVLPNNSKKGFMFGVRF 232 + +D + + L + + Sbjct: 305 PLYDILLPANPGTNAMFRAAIKDTATVGAYLRMPEIQRLLPADIQFTKFLWERPSADNVE 364 Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 + D + I+G ++ A +D + V + N+ Sbjct: 365 VLDLYALKSNRSSTPRIAGDVVSDARDTYDQFSKPAVSMSMNSRGAKEWQKLTSDANVNN 424 Query: 293 PLAVVLDGRVLTAPV---INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 V+ + + I G +I+G+FT++ +A +LRAG LP K I++ Sbjct: 425 TGIAVVLDNKVYTAPGCSVVGGISGGGTEITGSFTVDETKDIANVLRAGKLPAKAEIIQS 484 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 VG LG ++I G + + + +++++M+ YGK G+ AD ++ LN++L +L+ L Sbjct: 485 NVVGPSLGQEAIDSGFMSFLIAMAIVLVWMVFYYGKAGIFADIALLLNILLIFGVLTSLS 544 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 A LTLP IAGIVL IG++VD+N+L+ ERI+EE K + ++ GF A S+I D+NIT Sbjct: 545 AVLTLPGIAGIVLTIGMSVDANVLIFERIKEELAKGKGKSQAVSDGFGNALSSILDANIT 604 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529 + ++LF FG G ++GFA T+ + IL S+FTAI I R ++ K +++D + Sbjct: 605 TGLTALILFLFGSGPIKGFATTLLIGILTSLFTAIFITRLLVD-WYLSGKGRTLDFSTPL 663 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRP 588 L I+I F+ R IS + + LF G+DF GG V + Sbjct: 664 TKNL-FKNISINFLSKRKIAYVISFILVGIGLFSLFFGPGLQQGVDFIGGRSYQVRFEKE 722 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ------PGDSVAQTRVLEMVKKKI 642 V S + S L ++ + + + + Y+ D+ Q ++ ++K + Sbjct: 723 VSASEIASELNTVFGSGTNVKIYGENNQIKITTPYKVDVEGVEVDNEIQDKLYTSLQKYL 782 Query: 643 TE-----------IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690 + I + VGP I+ ++ + +I S + +YI +RF+ W Sbjct: 783 PDGTTKANFIVGSDDRAIGIMQSVKVGPTIADDIKNNAFLAIIGSLAVVFLYILLRFRKW 842 Query: 691 YFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 F+LGA+T + D+ LG F++ F +E + +AA+LT+IGYS+ND VVV+DR+ Sbjct: 843 QFSLGAVTAVFHDVLIVLGIFSITGKIMPFNMEIDQAFIAAILTVIGYSLNDTVVVFDRI 902 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ + D I+ ++N TLGR++ TS+ + +L + ++GG + F M G Sbjct: 903 RE--IVGERGWKGGDNINSAVNSTLGRTLNTSLTTLVVLLAIFIFGGESLRGFMFAMIVG 960 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++V SS+FIA P++ + N + Sbjct: 961 VIVGTYSSVFIATPVMFDTLKKKILNDK 988 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 83/195 (42%), Gaps = 20/195 (10%) Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96 K ++ GLDL+GG ++ L++ D + G + + K + + + Sbjct: 77 DEAKKKELNKGLDLKGGINVTLQISVKDILKGLANNTKSPIFN--KALADADTASKSSDD 134 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 D + + + E++ ++ + + +I Sbjct: 135 NYV-------------DLFFDAFDNIKGDSKLASPEVFANKGLSDEVNFQMTDDEVKPII 181 Query: 157 SHAIEQSM----EIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAK 211 I++S+ E++R+RID G+++ IQR S RIL++LPG +D +R ++LL +TA+ Sbjct: 182 RRKIDESIVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGARDIARAQELLSSTAQ 241 Query: 212 MSFHKVLPNNSKKGF 226 + F + N+ Sbjct: 242 LEFWETYEQNNPSFG 256 >gi|91215258|ref|ZP_01252230.1| protein-export membrane protein SecD/SecF [Psychroflexus torquis ATCC 700755] gi|91186863|gb|EAS73234.1| protein-export membrane protein SecD/SecF [Psychroflexus torquis ATCC 700755] Length = 1006 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 205/813 (25%), Positives = 361/813 (44%), Gaps = 58/813 (7%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 ++ + + LR + K G+ +++++ + +I + ++ I + + Q Sbjct: 184 IDESVTSAFEVLRERIDKFGVTQPNIQRLGDSGRILIELPGAKDISRIQNLLQSTAQLEF 243 Query: 124 SKLNVD-------------PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170 + +N+ T + E + V + + + Sbjct: 244 WDVYRANEFSDYLVTADAIVSENIKSETEKSEETQVEADEQEETETDDLESLLSSEDEEI 303 Query: 171 IDQIGISESTIQRLGSHRIL---IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 D + + I +D +++ L S LP K Sbjct: 304 EDFSKSNPLLSLVQTVGQPQGPIIAYFAIKDTAKVNSYLSMPQVKS---QLPAGKKFAKF 360 Query: 228 FGVRFLRDSDGNQYLVEDKVE-----ISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282 + +DS+ + +SG + A +D V Sbjct: 361 VWGKPAKDSEIIELYALKGNRNNEPQLSGAVVTDAQQTYDQVGRLAVSMQMDGRGSKIWE 420 Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340 + + ++ ++ + + I G+++ISG F+IE A LA +LRAG L Sbjct: 421 DMTGKASSQGSQIAIVLDNIVYSAPGVSSGPITGGRSEISGEFSIEEAQDLANVLRAGKL 480 Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 P NIV+ VG LG ++I G + L+ ++L+MI YGK G+ AD ++ +N++ Sbjct: 481 PASANIVQSEIVGPSLGQEAIDSGVLSFGIALIFVLLYMIFYYGKAGIYADIALVVNILF 540 Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460 +LS LGA LTLP IAGIVL IG++VD+N+L+ ERIREE K ++ ++ GF A Sbjct: 541 IFGVLSGLGAVLTLPGIAGIVLTIGMSVDANVLIFERIREELAKGKTQAEAISDGFKNAL 600 Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 S+I D+NIT + ++L FG G ++GFA T+ + I+ S+F AI + R + + K Sbjct: 601 SSILDANITTGLTGLILLTFGTGPIKGFATTLLIGIVTSLFCAIFLTRLFIAGGGKKGKS 660 Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580 +FL I I F++ R IS L + SI L T GLN G+DF GG Sbjct: 661 LPFSTGITKNWFL---NIDIDFLKKRKVAYIISALAILISIGSLATKGLNQGVDFVGGRS 717 Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVL 635 V +PV+ + +++ L + + + N+ + + D Q + Sbjct: 718 YTVRFEQPVNPTEIQTKLVQDLLSVEAKTYGSSSQLKITTNYKIEEEGTVIDDEIQAILF 777 Query: 636 EMVKKKIT--------------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 +K+ + I ++ VGP I+ ++ +I S I + Sbjct: 778 NNLKEYLPGGMILKSFKVGESGNDEKEFGIMSSIKVGPTIADDIKTASYYAIIGSLIVVF 837 Query: 682 IYIWIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSV 734 +YI +RF +W F+LGA+ +I D+ LG F+L F +E + +AA+LT+IGYS+ Sbjct: 838 LYILLRFRRWQFSLGAVAAVIHDVIIVLGLFSLLSNVLPFSLEIDQAFIAAILTVIGYSL 897 Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 ND VVV+DR+R+ + T LI+ +++ T+ R++ TS+ + + + ++GG I Sbjct: 898 NDTVVVFDRIREYFNEHPT-WKMHKLINLAVSSTISRTINTSLTTLVVLTAIFIFGGDSI 956 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 F + G+VV SS+FIA P++ + + Sbjct: 957 RGFMFALIIGVVVGTYSSVFIATPVMFDSVNKK 989 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 69/493 (13%), Positives = 152/493 (30%), Gaps = 37/493 (7%) Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF-LKKEGIGVFSMRQIQ 95 + ++ GLDL+GG +++L++ D + G D + + G + + Sbjct: 77 NTAKGKELNKGLDLKGGINVILQISVGDLLKGLANNSKDPAFNQAIADAGEARKNSQDS- 135 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI--- 152 + LF Q SK + T + N Sbjct: 136 ------------------FLELFYQAFESKEGASLASPDIFGTKALSDEVSFDMENSSVK 177 Query: 153 ---DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGT 208 ++ I ++ + E++R+RID+ G+++ IQR S RILI+LPG +D SR++ LL + Sbjct: 178 PIINRKIDESVTSAFEVLRERIDKFGVTQPNIQRLGDSGRILIELPGAKDISRIQNLLQS 237 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDG---NQYLVEDKVEISGIHLNGATANFDPKT 265 TA++ F V N ++ + + + E +VE + Sbjct: 238 TAQLEFWDVYRANEFSDYLVTADAIVSENIKSETEKSEETQVEADEQEETETDDLESLLS 297 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + F + T P+ + ++P K+Q+ Sbjct: 298 SEDEEIEDFSKSNPLLSLVQTVGQPQGPIIAYFAIKDTAKVNSYLSMPQVKSQLPAGKKF 357 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 + + + N G+ G + + M + Sbjct: 358 AKFVWGKPAKDSEIIELYALKGNRNNEPQLSGAVVTDAQQTYDQVGRLAVS--MQMDGRG 415 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 + D + + + + L + P ++ + G + S E ++ Sbjct: 416 SKIWEDMTGKASSQGSQIAIVLDNIVYSAPGVSSGPITGGRSEISGEFSIEEAQDLANVL 475 Query: 446 QSVFCSLDMGFSRAYST-----IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500 ++ ++ + L + L F + + + + + Sbjct: 476 RAGKLPASANIVQSEIVGPSLGQEAIDSGVLSFGIALIFVLLYMIFYYGKAGIYADIALV 535 Query: 501 FTAISIVRAMMIF 513 + I + Sbjct: 536 VNILFIFGVLSGL 548 >gi|284044637|ref|YP_003394977.1| protein-export membrane protein SecD [Conexibacter woesei DSM 14684] gi|283948858|gb|ADB51602.1| protein-export membrane protein SecD [Conexibacter woesei DSM 14684] Length = 989 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 200/840 (23%), Positives = 364/840 (43%), Gaps = 54/840 (6%) Query: 41 KNRISLGLDLRGGSHLVLE----VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQ 95 LGLDL GG LV + + + + + +R+ + + G+G + R + Sbjct: 27 TKDTKLGLDLEGGVELVYQGKPTPEVPEVTPEDIDRAVEIIRNRVDQLGVGEPEIVRAGR 86 Query: 96 NKITLSFADSRFKENIADKVTL-----FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 ++I++ + E ++V F + L + + T+ S +SQ Sbjct: 87 DQISVGLPSVQNIERAKNQVGTPAQLHFFDWEENVLTPEGRFVAPGLTSGDADSTRISQG 146 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 D + ++++ ++ + + + P L + Sbjct: 147 AGDTSQGQPLYDAVKLASRQRAGADSRTGSRTGTAYYLFDREHRYLAGPEESEADLLSAI 206 Query: 211 KMSFHKVLPNNSKKGFMF-----------GVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 + + D Y+++D V +SG + T Sbjct: 207 DRRTLPPGSEVLGVPQGWVVLQAVTRDSGETIEMGDPSARFYVLKDNVALSGKDIKDPTQ 266 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN---------- 309 F+ +P V+ F G F +TR+ + ++ L G V + Sbjct: 267 GFNDLQ-QPDVEFRFTNRGKSAFQNITREISQRGQSLALPGVNPANVVQHFAVELDGRLI 325 Query: 310 ------------QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 A I G FTI +A LA +L+ G+LPI L ++ + V A LG Sbjct: 326 SVASIDPQRLPDGIDGENGAIIEGGFTITSAQDLANLLKLGALPIGLELISQSQVSATLG 385 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 ++ +G A + GL L+ +F++ Y G++A F++ + + AL+ L+ T+TLP I Sbjct: 386 KQALNEGLVAGIVGLALVAVFLVAFYRILGVIATFALLIYGVYFFALIKLVPITMTLPGI 445 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG +L IG+A D+NI++ ER++EE R +SV ++ G+ + + I D+N+ ++ +L Sbjct: 446 AGTILTIGVAADANIVIFERVKEEVRAGRSVPAAISAGYRKGLTAIIDANVVTVMVAFIL 505 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 F V+GFA T+G+ L+S+FTA+ +A++ + R + + Sbjct: 506 FMLATAGVKGFAFTLGVGTLVSLFTAVFATQAILTTMGRTRL---LARPSALGASGEGHR 562 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 FM W +S + + + + GLN+GIDF G ++ + D S VRS Sbjct: 563 WKADFMGLSKWFFSMSGIILLICALAIGSKGLNFGIDFTSGTRITTNLQQSADESQVRSV 622 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 LE + D Q L Q + ++ V+ + + ++ V Sbjct: 623 LEGVGASDAKIQRV--SNAELGPNVVQISTEELRPAQVQTVRTALEREFGGVSNFSSSSV 680 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + IV +I S + YI +RF+W FA+ + + DI G +AL G E Sbjct: 681 GPSFGETIANNAIVAIIASLFVISAYIALRFQWRFAVPVLIAVAHDILIVSGIYALTGRE 740 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + VAA+LT++GYS+ D ++V+DR+R+NM +F ++++S++E L RS+ TS Sbjct: 741 VTASTVAALLTVLGYSLYDTIIVFDRIRENMPRMPR-AAFSQIVNRSMSEVLTRSLATSF 799 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR----AKNARI 833 + + +L + ++GG + FA + G++ A SS+FIA P+L + A+ RI Sbjct: 800 STGLPILALMLFGGETLRDFAFALLVGVLSGAYSSVFIAGPVLWHWKEREPVYVARRKRI 859 >gi|326800368|ref|YP_004318187.1| protein-export membrane protein SecD [Sphingobacterium sp. 21] gi|326551132|gb|ADZ79517.1| protein-export membrane protein SecD [Sphingobacterium sp. 21] Length = 1010 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 214/819 (26%), Positives = 376/819 (45%), Gaps = 59/819 (7%) Query: 70 LQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVNSKLN 127 + + LR+ + K G+ ++++ Q N+I + ++ + + + + Sbjct: 180 IDRSFNILRTRIDKFGVTSPNIQRQQGTNRILIELPGVSDEDRVRKLLQGSAKLEFWETY 239 Query: 128 VDPKKNLLVTTTEKEISIVLSQ-------------------------------NNIDQVI 156 + + L+ + ++ L D Sbjct: 240 DNSEIFPLLENINRTLASTLKADTKSNSSVTAADTSAKDTTGGRLASLGGNKAAGSDSTK 299 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE------QDPSRLRQLLGTTA 210 + ++E + + + I + + ++ +D + + + Sbjct: 300 KDSSTVALEQAKNQNPLFAVLSPNIGQGPQGQQMLGQGPVIGYVLQKDTALVNSYFNSAE 359 Query: 211 --KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 + V S K + + + ++G + A A+ D +T+ P Sbjct: 360 IKAIIPGNVKLLWSVKPVSKETKMFQLFAVKPTGLNAGPVLTGNVIADARADVDQRTNNP 419 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVV----LDGRVLTAPVINQAIPSGKAQISGNFT 324 V++ + GAR + +++ LD V +AP + IP+G + I+GNFT Sbjct: 420 QVEMVMNSEGAREWRKISAAAAAANPKKAIAIVLDNTVYSAPTVQDEIPNGVSSITGNFT 479 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E LA +L+AG LP IVEE VG LG +I G + V GLV++++FMI Y Sbjct: 480 FEDTQDLANVLKAGRLPAPAKIVEEAIVGPTLGQAAIDAGINSSVIGLVVVLIFMIFYYN 539 Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444 + GLVA+ ++ NV + +L+ LGA LTLP IAGIVL +G AVD+N+L+ ERIREE Sbjct: 540 RAGLVANIAVIFNVFFIMGILASLGAVLTLPGIAGIVLTMGTAVDANVLIYERIREEYAL 599 Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504 + V ++ G+ A +I DS IT + ++L+ FG G + GFA T+ + I+ S+FTAI Sbjct: 600 GKGVRQAISDGYKHAMPSILDSQITTFLVGLILYIFGTGPILGFATTLLIGIITSLFTAI 659 Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564 I R + ++I+ S+ + F++ R ISI +I S+ + Sbjct: 660 FITRIIFEWMIKKDMKISVSYPWSDHTLK---NVNFGFIKNRKKFYAISIALTIISLISI 716 Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624 FT G + G+DF GG V + V+L VR ++ + F G+ V Y Sbjct: 717 FTKGFSLGVDFSGGRTYTVKYEKAVNLEEVRDHVNGTFNVTSEVKTFGGDNQLRVTTPYL 776 Query: 625 PG--DSVAQTRVLEMVKKKITE-IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 D A +VL+ + + + + I +++ VGP I+ ++ I VI S I + Sbjct: 777 IDQTDDAADKQVLDKLNEGLAKVQNNPYQIVSSQKVGPTIANDIKVSAIYSVIFSIIVIA 836 Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSV 734 +YI IRF+ W +++ A +L D LG F+L F ++ + +AAVLT++ YS+ Sbjct: 837 LYILIRFRKWQYSIAAAISLAHDAIILLGIFSLFDGILPFSLDLDQHFIAAVLTVLAYSI 896 Query: 735 NDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 ND VVV+DR+R+ ++ + + +++ +IN+TL R++ TS+ + + V+GG V Sbjct: 897 NDTVVVFDRIREYLREHRAKNEPISHVVNTAINKTLSRTIITSLTVIFVLAVLFVFGGEV 956 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 I F+ + GI+ SSIF+AAPI + N + Sbjct: 957 IRGFSFAILIGIIFGTYSSIFLAAPIFADLQGDSETNTK 995 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 13/194 (6%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 + ++LGLDL+GG ++ +E+ + ++ D +F K + Q Sbjct: 73 ERELALGLDLKGGMNVTMEISLKELISNLADNPKD--ENFKKALDNAEARSKDSQKDFVS 130 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 F + K+ + N D N + + + + Q AI Sbjct: 131 LFGEEF------KKLNPNGKLATFFANKDNAVNNITSNSSDGDILAFLQKESG----SAI 180 Query: 161 EQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219 ++S I+R RID+ G++ IQR ++RILI+LPG D R+R+LL +AK+ F + Sbjct: 181 DRSFNILRTRIDKFGVTSPNIQRQQGTNRILIELPGVSDEDRVRKLLQGSAKLEFWETYD 240 Query: 220 NNSKKGFMFGVRFL 233 N+ + + Sbjct: 241 NSEIFPLLENINRT 254 >gi|325281879|ref|YP_004254421.1| protein-export membrane protein SecD [Odoribacter splanchnicus DSM 20712] gi|324313688|gb|ADY34241.1| protein-export membrane protein SecD [Odoribacter splanchnicus DSM 20712] Length = 1000 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 200/827 (24%), Positives = 376/827 (45%), Gaps = 65/827 (7%) Query: 64 DFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTL 117 D + + D LR+ + + G+ ++R+ +I + + + + + Sbjct: 172 DVIRQEAEGAIDNTFHILRTRIDRFGVAQPNIRKADISGRIVIELPGIKDAQRVRKLLQG 231 Query: 118 FLQGVN---------------------------------SKLNVDPKKNLLVTTTEKEIS 144 + N ++ S Sbjct: 232 TAALEFYETFDNGDFFPYLQAANEKARTIVEAEEILTTENAANATAEQPETTKADTTANS 291 Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI--SESTIQRLGSHRILIQLPGEQDPSRL 202 ++ D + +++ + + + ++ LI +D + + Sbjct: 292 LISQAAAQDSTNNLLADEAAFKKANPLFSVLTPNIDRQSGQIIPTGSLIGYSHVKDTAAV 351 Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 ++L + + G + + K + G + A ++ Sbjct: 352 NEILTMPQVKATLPRNARLLWEMKPNGEVIALHAIKIT-TRDGKAPLDGGAVVDARQEYE 410 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + +PVV ++ + GA+ + +T++N+G +A+VLDG V ++P +N I G +QISG Sbjct: 411 HNSGRPVVSMNMNGEGAKVWARLTKENVGHSIAIVLDGYVCSSPNVNDEIKGGSSQISGQ 470 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 F ++ A LA +L++G LP I+ + VG LGS+SI G + V L++++M+ Sbjct: 471 FDVKEAQDLANILKSGKLPAPARIIADEIVGPSLGSESIQSGMWSFVIAFGLVLIYMLFF 530 Query: 383 Y-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 Y GL AD ++F N+ +L+ +GA LTLP IAGIVL +G++VD+N+L+ ERI+EE Sbjct: 531 YSKGAGLAADIALFTNLFFLFGVLASIGAVLTLPGIAGIVLTMGMSVDANVLIYERIQEE 590 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 R + + ++ G+ +AYS I D N+T L+ +L++FG G ++GFA T+ + I S+F Sbjct: 591 LRAGKGLRLAIKEGYKQAYSAIIDGNVTTLLTGFILYYFGEGPIKGFATTLIIGIFTSLF 650 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561 AI I R ++ + + + + F+ R G +S + ++ + Sbjct: 651 CAIFITRIILDNASKKNDNVRFTTPFTANWLR---DVHFPFLERRKVGYTVSGIITVVCL 707 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 +FT G + GIDF GG V ++PV++ V +L ++ + F G+ + Sbjct: 708 VSMFTRGFDKGIDFVGGRTYTVAFDQPVEVEKVAESLAAVYGSAPEVKTFGGDNQVRITT 767 Query: 622 QYQPGDS--VAQTRVLEMVKKKITEIVPL---------STIQNTEIVGPKISRELIRKGI 670 +Y+ D A V ++ + + +P Q ++ VGP ++ ++ R I Sbjct: 768 KYKIEDEGTEADDEVEALLYEGLKSYLPDGTSKEVFLSDYRQMSQKVGPAVAEDVTRAAI 827 Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAV 723 VI + + + +YI +RF W + GA+ L + LG F+L F +E + + Sbjct: 828 WSVIFALLVIFVYIMVRFSKWQYGAGAVLGLAHNTIVVLGLFSLLAGFLPFSLEIDQAFI 887 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 AA+LT++GYS+ND VVV+DR+R+ LY ++ D ++N TL R+ TS++ + + Sbjct: 888 AAILTVVGYSINDTVVVFDRIREYHHLYPKRDDL-EVTDAALNSTLRRTFSTSLSTLVVL 946 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 L + ++GG+ I F + GI+V SS+F+A P+ K Sbjct: 947 LAIFIFGGTSIKGFVFALLIGIIVGTYSSLFVATPLAYEFRKRFGKK 993 Score = 64.7 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 20/180 (11%) Query: 43 RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102 ++LGLDLRGG ++ +EVD D V DE + +E + + + Sbjct: 76 ELNLGLDLRGGMNVTMEVDVVDVVRSLANYSQDEAFNQALQEAVKMRTSS---------- 125 Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH---- 158 ++ + + + + +I I S + VI Sbjct: 126 -----PKDFVTLFGEAFERIAPNAQLASPNIFGTVELKDKIKIGASNKEVLDVIRQEAEG 180 Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 AI+ + I+R RID+ G+++ + S RI+I+LPG +D R+R+LL TA + F++ Sbjct: 181 AIDNTFHILRTRIDRFGVAQPNIRKADISGRIVIELPGIKDAQRVRKLLQGTAALEFYET 240 >gi|297184088|gb|ADI20207.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 995 Score = 359 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 208/829 (25%), Positives = 361/829 (43%), Gaps = 64/829 (7%) Query: 58 LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKV 115 ++ + V + LR+ + + G+ ++++ +I + + + + Sbjct: 171 VQAEIRRDVEAAIANVFTVLRARIDQFGVVQPNIQRLEGTGRILVELPGVKDPARVQKLL 230 Query: 116 TLFLQGVNSKLNVDPK------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163 + + + ++L+ ++ + + D I A + Sbjct: 231 QSTAELQFWNMYEGAEVLPFLVSANDKLRDLVEGEKATTETVEEAPDFSDFAIEDAEVPA 290 Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPG---------EQDPSRLRQLLGTTAKMSF 214 D + + + + +D +++ L + Sbjct: 291 DSSATDSSDVLSTNNPLFEVFRPMVSETGMAMQGPRVGYSLIRDTAKVNAFLARPEIVQM 350 Query: 215 HKVLPNNSKKGFMFGVRFLRDSD---GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 N+K + D + E+ E+ G + A + D V Sbjct: 351 MNQELRNAKFLWSSKPEPNSDIITLLAIKGNRENTPELDGGVIVDARPDLDEYNRNIVTM 410 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 + P V LD V + P + I G+ QI+GNF+ E + Sbjct: 411 AMNGTGAQKWQRLTAEAAAQTPKRSVAVVLDNYVYSYPQVQNEIAGGRTQITGNFSAEES 470 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 LA +LRAG L I++ VG LG ++I + L L++L+M Y GL Sbjct: 471 ADLANILRAGKLDAPARIIQSDVVGPSLGKEAISASINSFAIALALVLLYMYFYYSGAGL 530 Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448 VA+ ++ +N+ L +L+ L A LTLP +AGIVL IG+AVD+N+L+ ERIREE R + + Sbjct: 531 VANMALLINMFLIFGILASLRAVLTLPGMAGIVLTIGMAVDANVLIFERIREEMRLGKGL 590 Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508 ++ G+ + S I D+N+T + ++LF FG G +RGFA T+ + IL S+FTA+ I R Sbjct: 591 RAAIVDGYKNSNSAIIDANVTTFLTGIILFAFGTGPIRGFATTLMIGILTSLFTALFISR 650 Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 + + KK ++ + F++ R GIS + + LFT G Sbjct: 651 IVFERRLAGKKDIKFSTKTTKNWYTNM---SFDFLKKRKVAYGISTVVIAIGLFSLFTKG 707 Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQ 622 LN G+DF GG V ++PV++S V +L + + + + ++ Sbjct: 708 LNLGVDFVGGRSFQVRFDQPVEVSDVAESLSNAFVDEEGNSYTPVVKTLGDANQVIITTS 767 Query: 623 YQPG------DSVAQTRVLEMVKKKITEIVPLSTIQNTEIV-----------GPKISREL 665 Y+ G D Q+++ V E +PL E GP I+ ++ Sbjct: 768 YRIGETGPTIDEDIQSKLYVGVADFFAEELPLEYFFTDETEDAIGLVGSRVVGPTIADDI 827 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718 + +I S I + +YI IRF+ W F+LGA+ L+ D+ +G F+L F +E Sbjct: 828 KSGAVYSIIFSLIVVFLYILIRFRKWQFSLGAVVALLHDVLFVMGVFSLADGFLPFQLEV 887 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + +AA+LT+IGYS+ND VVV+DR+R+NM + I+KS+N+TL R+ TS+ Sbjct: 888 DQAFIAAILTVIGYSLNDTVVVFDRIRENM--GSRGKQNGVSINKSLNQTLSRTFNTSLT 945 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 F +L + ++GG VI F + G++V SS+FIA P++ D Sbjct: 946 TFFVLLVIFLFGGEVIRGFMFALLLGVLVGTYSSLFIATPVMFDASDKE 994 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 57/390 (14%), Positives = 135/390 (34%), Gaps = 18/390 (4%) Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF-----TAIS 505 +++ A S+ DS+ + F G + S+ Sbjct: 282 AIEDAEVPADSSATDSSDVLSTNNPLFEVFRPMVSETGMAMQGPRVGYSLIRDTAKVNAF 341 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + R ++ ++ + + + + R + + + L Sbjct: 342 LARPEIVQMMNQELRNAKFLWSSKPEPNSDIITLLAIKGNRENTPELDGGVIVDARPDLD 401 Query: 566 THGLN---YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622 + N ++ G + L + RS L S+ E Sbjct: 402 EYNRNIVTMAMNGTGAQKWQRLTAEAAAQTPKRSVAVVLDNYVYSYPQVQNEIAGGRTQI 461 Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 + + +++ ++ + I +++VGP + +E I I I+ +L+ Sbjct: 462 TGNFSAEESADLANILRA--GKLDAPARIIQSDVVGPSLGKEAISASINSFAIALALVLL 519 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 Y++ + L A L++++ G A L +A ++ IG +V+ V++++ Sbjct: 520 YMYFYYS-GAGLVANMALLINMFLIFGILASLRAVLTLPGMAGIVLTIGMAVDANVLIFE 578 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ M+L R I + + ++ F++ + + +G I FA + Sbjct: 579 RIREEMRL---GKGLRAAIVDGYKNSNSAIIDANVTTFLTGIILFAFGTGPIRGFATTLM 635 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 GI+ +S+F A I +++ R + Sbjct: 636 IGIL----TSLFTALFISRIVFERRLAGKK 661 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 13/336 (3%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 K ++LGLDL+GG +++LEV D + G + D F++ + Q QN Sbjct: 71 KKEMNLGLDLKGGMNVILEVSVKDVLKGLVANAQDP--RFIQAIANTDEAQSQGQNNYLN 128 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 +F K + L L + + + Q I + + AI Sbjct: 129 TFFAEFDKISAETGGGLLLSDASLFGTPEMTGKVGFNAANDA-----VQAEIRRDVEAAI 183 Query: 161 EQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219 ++R RIDQ G+ + IQR G+ RIL++LPG +DP+R+++LL +TA++ F Sbjct: 184 ANVFTVLRARIDQFGVVQPNIQRLEGTGRILVELPGVKDPARVQKLLQSTAELQF----- 238 Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279 N +G + +D + LVE + + + V S + Sbjct: 239 WNMYEGAEVLPFLVSANDKLRDLVEGEKATTETVEEAPDFSDFAIEDAEVPADSSATDSS 298 Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339 V G + P + ++ A+++ + + Sbjct: 299 DVLSTNNPLFEVFRPMVSETGMAMQGPRVGYSLIRDTAKVNAFLARPEIVQMMNQELRNA 358 Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375 + + E + L + + + G V++ Sbjct: 359 KFLWSSKPEPNSDIITLLAIKGNRENTPELDGGVIV 394 >gi|189501552|ref|YP_001957269.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Amoebophilus asiaticus 5a2] gi|189496993|gb|ACE05540.1| protein-export membrane protein SecD [Candidatus Amoebophilus asiaticus 5a2] Length = 995 Score = 357 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 208/808 (25%), Positives = 370/808 (45%), Gaps = 41/808 (5%) Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQ 120 D + + + +RS + + G ++++ KI + E + + Q Sbjct: 178 DTEIEHAIDRAFEIIRSRIDRFGTSQPNIQRLQGTGKIQIELPGVNNPERVRKLLQGVAQ 237 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 K+ + + ++ + + + + ++ Q+ ST Sbjct: 238 LRFWKVYELSQIDKILQAVNSLLVAEEKGKAKVEPTKPSDNANNSAAKELTAQLEQGIST 297 Query: 181 IQRLGSHRILIQL------------PGEQDPSRLRQLLGTTA---KMSFHKVLPNNSKKG 225 + + I +D ++Q+L + + K Sbjct: 298 PKEQDENIISPLYKLLKLKPGHGLTYSVEDIHIIQQILERPDVKLLFPKDLMWLWDVKPH 357 Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 + + Q + + G + A FD V + + GA+ + + Sbjct: 358 KLENGTEVLSVHPIQIGKNNLPLLEGDVITDARQVFDKYGKPA-VSMQMNGQGAKLWKNI 416 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 T NIGK +A+ LD +V +AP +N IP G +QI+GNF+IE A LA +L+AGSLP + Sbjct: 417 TASNIGKSIAITLDNKVYSAPTVNTEIPDGNSQITGNFSIEEAKDLANILKAGSLPAPVK 476 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 I EE +G L + +G ++ GL ++VLFM++ Y K G+VA+ ++ N++ L +L Sbjct: 477 ITEEAIIGPTLSKTAQAQGITSMALGLAVVVLFMLLYYAKGGIVANLALLFNILFILGIL 536 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 + A LTL IAGIVL IG+++D+N+L+ ERIREE R + +++ G+ +AYS+I D Sbjct: 537 AQFNAALTLSGIAGIVLTIGMSIDANVLIFERIREELRIGNKMREAINKGYQKAYSSIID 596 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 SN+T + +L+ G G VRGFA T+ + I+ S FTA+ I R + + + K +I Sbjct: 597 SNVTTFLTGAILYGLGQGPVRGFATTLMIGIVTSFFTAVFITRLIFTWWAKNSKEDNISF 656 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + + ++ +C + + + V S+ +I + ++ GLN G+DF GG + Sbjct: 657 SFVFNKNVLTNCRIDFMGKRKLFYVASSLFIAIGLLLIVKQGGLNLGVDFTGGRSYVINF 716 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT-- 643 + PV+ +++++ L + G N + + + ++ Sbjct: 717 SEPVETALLKTKLAEQLGDQSTEVKSYGANNVVKITTSYLIQETSSEAEEKAKNTLVSSI 776 Query: 644 --------------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688 P I + VGP I+ ++ +I S + + YI IRF Sbjct: 777 QESTKFSYTDDVTGAKNPSFAIVSISKVGPSIAGDIQASAKKSIIFSLLVIFGYIVIRFR 836 Query: 689 KWYFALGAITTLILD---ITKTLGFFALFG--IEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 +W F L A+ L+ D + T FG E + +AA+LT+IGYS+ND VV++DR Sbjct: 837 RWQFGLSAVIALLHDSLTVFTTFAIARAFGYTYEIDQVFIAAILTIIGYSINDTVVIFDR 896 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 +R+ +L+ +F + +KSIN+TL R++ TS ++V + VWGG V+ F+ + Sbjct: 897 IREMQRLHPN-ENFTSIANKSINDTLSRTLITSFTTLVAVFILFVWGGEVLRGFSFALLV 955 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNA 831 GI + SSI IAAP++L + Sbjct: 956 GITFGSYSSICIAAPLILDFSKRNYQKR 983 Score = 65.1 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 17/182 (9%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 +N ++LGLDL+GG H+ LEV + + G D FL + + Sbjct: 78 ENALNLGLDLQGGMHVTLEVSPVELIQGLSGNSKD--EKFLAAIKMAEQKQHTKAS---- 131 Query: 101 SFADSRFKENIADKV--TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 ++ ++ + + +N + + + I+ H Sbjct: 132 -LPFTKLFYQAYKEISPEGKFSDIFA---TAANRNRVTRHASDQEILKYLDTEIE----H 183 Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 AI+++ EIIR RID+ G S+ IQR G+ +I I+LPG +P R+R+LL A++ F KV Sbjct: 184 AIDRAFEIIRSRIDRFGTSQPNIQRLQGTGKIQIELPGVNNPERVRKLLQGVAQLRFWKV 243 Query: 218 LP 219 Sbjct: 244 YE 245 >gi|312887679|ref|ZP_07747269.1| protein-export membrane protein SecD [Mucilaginibacter paludis DSM 18603] gi|311299835|gb|EFQ76914.1| protein-export membrane protein SecD [Mucilaginibacter paludis DSM 18603] Length = 986 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 197/813 (24%), Positives = 366/813 (45%), Gaps = 56/813 (6%) Query: 70 LQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128 + L + + + G+ +++ Q N+I + KE + + + Sbjct: 177 ITQAKTVLTTRIDQFGVTQPNIQLQQGNRILIEMPGVFDKERVDKLLQGSANLEFYETFD 236 Query: 129 DPKKNLLV---------------TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR--- 170 + + ++ T T + + + ++ + Sbjct: 237 NAEFYQVLINVDKILAAKAKINKTDTTAAQKVAATAETKKDSTKADLSLLNKVQKNAGKD 296 Query: 171 ------------IDQIGISESTIQRLGSHRILIQLPG-------EQDPSRLRQLLGTTAK 211 + + R G + PG ++D +++ L + Sbjct: 297 STSALGKKNQLNQNPLFAVMQLNTRQGENGQPQLGPGPVVGYSAQKDTAKVNAYLNSADA 356 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKPVV 270 S + + + E+ ++G ++ A + D K + VV Sbjct: 357 KSVIPHNVKLLWGVKPIEKTKIFELYAIKLSGAENGPVLAGDVISDARPSNDQKGNPEVV 416 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNFTIET 327 + + + +P + LD V +AP + I G + ISGNF+IE Sbjct: 417 MVMNSDGATKWRRVTAVAAAKEPKKAIAIVLDNNVYSAPTVQNEIAGGISSISGNFSIED 476 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 LA +L++G L +I+ E VGA LG ++I G + + GL+++++FM+ Y + G Sbjct: 477 TKDLANVLKSGRLKAPAHIIGEEIVGASLGQEAISAGLTSSLVGLLVVLIFMVAYYNRAG 536 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 VA ++ +NV + +L+ L A LTL IAGIVL +G+AVD+N+L+ ER+REE +S Sbjct: 537 TVACIAVVINVFFLMGVLASLNAVLTLEGIAGIVLTLGIAVDANVLIYERVREELAHGKS 596 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 + ++ GF+ A S+I DSNI+ + +L+ FG G +RGFA T+ + I+ S+F ++ I Sbjct: 597 LRIAVTDGFTHALSSILDSNISTFLTGFILYIFGSGPIRGFATTLMIGIVTSLFCSLLIS 656 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 R + ++++ S F F++ RF S +F + + +FT Sbjct: 657 RLIFEWMLKKDIQIKFSNPWSSHTFK---NAHFAFVKNRFKFYIFSGVFILAGLVSMFTQ 713 Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY---Q 624 G NYG+DFKGG V ++PV VR + + + F N + Sbjct: 714 GFNYGVDFKGGRTYIVRYDQPVSSESVREAVVLTLNKETIVKTFGTSGNQVSITTTYLID 773 Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 + A T+V E +K + ++ I + + VGP I+ +L I V+ + + + +YI Sbjct: 774 DNSNEAGTKVQEQLKTGLAKVPGKYQIMSQQTVGPTIASDLKSSAIYAVLFAILIISVYI 833 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDK 737 IRF+ W F+LGA+ D L FF+L F ++ + +AA+LT+IGYS+ND Sbjct: 834 LIRFRKWQFSLGAMIATAHDALLVLSFFSLFKDVLPFSLDIDQKFIAAILTVIGYSINDT 893 Query: 738 VVVYDRMRKNMK-LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 VVV+DR+R+ ++ + + ++I+++IN TL R++ T++ ++ + ++GG VI Sbjct: 894 VVVFDRIREFLELHHAKTDKPEEVINQAINSTLSRTIITALTVIFVLVVLFIFGGDVIRG 953 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 F+ + G+ SSI +A P+++ + Sbjct: 954 FSFALLIGVTFGTYSSICVATPVIVDFGKKDLR 986 Score = 54.7 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 25/183 (13%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF-LKKEGIGVFSMRQIQNKIT 99 I+LGLDL+GG + +++ + V D + L + + Sbjct: 71 DKEIALGLDLKGGMDVTMQISLVELVKSLSNNNPDVALNQALANASVIAKTST------- 123 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVD-PKKNLLVTTTEKEISIVLSQNNIDQVISH 158 AD +TLF+Q + I S N + + Sbjct: 124 ------------ADYITLFVQEYEKLAPNAKLAAIFSTKENQDHIKFNASNNEVKSFLQD 171 Query: 159 ----AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 AI Q+ ++ RIDQ G+++ IQ +RILI++PG D R+ +LL +A + F Sbjct: 172 QAKVAITQAKTVLTTRIDQFGVTQPNIQLQQGNRILIEMPGVFDKERVDKLLQGSANLEF 231 Query: 215 HKV 217 ++ Sbjct: 232 YET 234 >gi|260062010|ref|YP_003195090.1| bifunctional preprotein translocase subunit SecD/SecF [Robiginitalea biformata HTCC2501] gi|88783572|gb|EAR14743.1| protein-export membrane protein SecD/SecF [Robiginitalea biformata HTCC2501] Length = 984 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 187/803 (23%), Positives = 345/803 (42%), Gaps = 40/803 (4%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 V+ + + LR + G+ ++++ N +I + +R D ++ Q Sbjct: 185 VDEAVVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGARDIARAQDLLSSTAQLEF 244 Query: 124 SKL-NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS---ES 179 + + + E + + + + + A E + D + ++ Sbjct: 245 WETYEPGNQHLINFFIQANEELKSIVEADTPEPMEEASEIDSLLSDVAQDSLDLATERNP 304 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 ++L + + + P FM+ Sbjct: 305 LFEKLQLNGPGYAIGLAAIQDTAEIGSWLRMPRIRRLLPPQVQFTKFMWERPSQGTEVAA 364 Query: 240 QYLVE----DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 Y ++ +SG ++ A FD V N+ Sbjct: 365 LYALKSNRDGVPRMSGDVVSDARDQFDQYNRPAVGMDMNVRGAREWQELTNEANLNNTGI 424 Query: 296 VVLDGRVLTAPVINQAI---PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 ++ + P G ++I+G FT+ +A +LRAG LP + I++ V Sbjct: 425 AIVLDNRVYTAPGVSQKGGIPGGSSEITGTFTVTETKDIANVLRAGKLPAEAEIIDSFVV 484 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G LG ++I G + V ++ ++++MI YG+ GL +D ++ N++L +L+ LGA L Sbjct: 485 GPSLGQEAIDSGFTSFVIAMIFVLIWMIFYYGRAGLFSDIALVFNIVLIFGVLASLGAVL 544 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAGIVL IG++VD+N+L+ ERI+EE +K + + ++ GF A S+I D+NIT + Sbjct: 545 TLPGIAGIVLTIGMSVDANVLIFERIKEELQKGKGMAQAVSDGFDNALSSILDANITTGL 604 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 ++L FG G ++GFA T+ + IL S+FTAI + R ++ + + K Sbjct: 605 TALILLVFGSGPIKGFATTLIIGILTSLFTAIFVTRLLIDAYLNRRGRK--LDFATGITR 662 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 + + I F+ R +S + I + LFT GL+ G+DF GG + V+ Sbjct: 663 GLFQNMNIDFLSKRKIAYVVSGVLLIAGLASLFTKGLDQGVDFVGGRNYQIRFVDAVNPV 722 Query: 593 VVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKKKITE--- 644 + L + D + + V +Q D + ++K + + Sbjct: 723 EISGELTDALGSASAKTFGDANQIMVTTKYKVDVQGTEVDEEILGILFNSLQKYLPDGTT 782 Query: 645 --------IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALG 695 + VGP I+ ++ + + VI S + +YI +RF +W F+LG Sbjct: 783 YEDFVPGGTNEDVGVMKYRKVGPTIADDIKKNAVWAVIGSLAVVFLYILLRFRRWQFSLG 842 Query: 696 AITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 A+ + D+ LG F++ F +E + +AA+LT+IGYS+ND VVV+DR+R+ + Sbjct: 843 AVAAVFHDVLIVLGVFSVTSSLMPFSMEIDQAFIAAILTVIGYSLNDTVVVFDRIREIIA 902 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809 + + ++N TL R++ TS+ + +L + ++GG + F M G++V Sbjct: 903 E--RGWRAGENTNMALNSTLSRTLNTSLTTLVVLLSIFIFGGETLRGFMFAMIVGVIVGT 960 Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832 SS+FIA PI+ + + Sbjct: 961 YSSLFIATPIMFDSLSRKISAGK 983 Score = 63.9 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 20/187 (10%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 K ++ GLDL+GG ++ L++ D ++G + + K + R Sbjct: 79 AKKKELNKGLDLKGGINVTLQISVRDILSGLANNTKNPAFN--KALADADAASRNSDETY 136 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 + V + EI+ +S + +I Sbjct: 137 -------------LELFFDAFDAVKGDTKLASPDIFANKGLSDEINFEMSDEEVKPIIRR 183 Query: 159 AIEQSM----EIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 +++++ E++R+RID G+++ IQR S RIL++LPG +D +R + LL +TA++ Sbjct: 184 KVDEAVVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGARDIARAQDLLSSTAQLE 243 Query: 214 FHKVLPN 220 F + Sbjct: 244 FWETYEP 250 >gi|163755881|ref|ZP_02162998.1| putative protein-export transmembrane SecDF protein [Kordia algicida OT-1] gi|161324052|gb|EDP95384.1| putative protein-export transmembrane SecDF protein [Kordia algicida OT-1] Length = 1015 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 208/818 (25%), Positives = 370/818 (45%), Gaps = 55/818 (6%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123 V+ + + L + + G+ +++++ +I + ++ I + + Sbjct: 198 VDQSIVSAKEVLNKRIDQFGVTQPNIQRLGTSGRILIELPGAKDVIRIEKLLQRTAELQF 257 Query: 124 SKLNVDPKKNLLVTTTEKEISIVL---------SQNNIDQVISHAIEQSMEIIRQRIDQI 174 K D K + E L + + + +Q + D + Sbjct: 258 WKTYNDNAKLSSYLFSVNEKLKELPGYSKDTQKADDATENEGEDDADQDALLTSTEEDSL 317 Query: 175 GISESTIQRLG-----SHRILIQLPGEQDP--SRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 + + +L I ++D S L + + + + K Sbjct: 318 NVINPLLDKLRLANAGGGIIGFAKEEDKDTIMSLLSNDILKQVTPAELRYVRFAFGKEPT 377 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 G+ L DG + + + ++ G + + + KP V++ + +GA+++ +T Sbjct: 378 NGMYELYALDGKRKGNKAEPQMKGDVV-DGASQGYDQYSKPSVNMQMNGIGAKQWENLTE 436 Query: 288 DNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344 + + + + + V N I G +ISG FTIE A LA +LRAG LP + Sbjct: 437 EVYNERVNIAVVLDNIVYSAPGVSNGKISGGNTEISGQFTIEEAQDLANVLRAGKLPARA 496 Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404 +I++ VG LG ++I G + + L L++++MI YG+ GL AD ++ N++L + Sbjct: 497 DILQSEIVGPSLGQEAIDSGLMSFLIALGLVLVWMIFYYGRAGLFADIALAFNILLIFGV 556 Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM--GFSRAYST 462 LS LGA LTLP IAGIVL IG++VD+N+L+ ER+REE K QS+ ++ + A S+ Sbjct: 557 LSNLGAVLTLPGIAGIVLTIGMSVDANVLLFERVREELAKGQSLQEAIKHAFSWKGAMSS 616 Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 IFD+NIT + ++LF FG G ++GFA T+ + I S+FTAI I R ++ + I Sbjct: 617 IFDANITTGLTALILFLFGTGPIKGFATTLLIGIGTSLFTAIFITRLLIDWYIGKGNNLD 676 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQL 581 F + F++ R IS + + +LF LN G+DF GG Sbjct: 677 FSTGVTKNLFRNM---NVSFLKKRKIAYVISGIVIAIGLSSMLFGSKLNQGVDFVGGRSY 733 Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 V V V+ +L ++ + S + +++ + T V + +K+ Sbjct: 734 QVRFANDVSAQDVKQDLTAIFGSENSPEVKTFGGENQLKITTKYKVDETGTEVDDEIKEM 793 Query: 642 I-------------------TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 + I + VGP I+ ++ + V+ S + + + Sbjct: 794 LFNGLSKFLPSDMKYVDFVDGAEDKTVGIMQSVKVGPTIADDIKKDSFWAVLGSLVVVFL 853 Query: 683 YIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVN 735 YI +RF+ W F+LGA+T + D+ LG F+L F +E N +AA+LT+IGYS+N Sbjct: 854 YILLRFRRWQFSLGAVTAVFHDVLIVLGIFSLAWKYVPFTMEINQAFIAAILTVIGYSLN 913 Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 D VVV+DR+R+ M +++ ++N TL R++ TS+ + +L + ++GG I Sbjct: 914 DTVVVFDRIREFMDE-RPDWKLSKVVNAALNSTLSRTLNTSLTTLVVLLAIFIFGGESIR 972 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 F + G++V SS+FIA PI+ N + Sbjct: 973 GFMFALIVGVIVGTYSSMFIATPIMFDTIKKGDINKGL 1010 Score = 56.6 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 8/184 (4%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 + ++ GLDL+GG +++L+V D + G + +F K + Q Sbjct: 88 AKEKELNKGLDLKGGINVILQVSVKDILKGLANNTEN--ETFNKALERADELQKDAQEDY 145 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 SF + + T L+ ++ + + +N I + + Sbjct: 146 VESFFRAFD-----ELNTEGLKLADTDIFYTAALREEFKKETFNTPDDVVKNVIRRKVDQ 200 Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 +I + E++ +RIDQ G+++ IQR S RILI+LPG +D R+ +LL TA++ F K Sbjct: 201 SIVSAKEVLNKRIDQFGVTQPNIQRLGTSGRILIELPGAKDVIRIEKLLQRTAELQFWKT 260 Query: 218 LPNN 221 +N Sbjct: 261 YNDN 264 >gi|254495269|ref|ZP_05108193.1| protein-export membrane protein SecD [Polaribacter sp. MED152] gi|85819623|gb|EAQ40780.1| protein-export membrane protein SecD [Polaribacter sp. MED152] Length = 990 Score = 353 bits (906), Expect = 6e-95, Method: Composition-based stats. Identities = 197/826 (23%), Positives = 378/826 (45%), Gaps = 59/826 (7%) Query: 55 HLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIA 112 ++ + + +N + + LRS + K G+ ++++I N +I + ++ E + Sbjct: 175 NITVRETLQEEINSSIGTAFEVLRSRIDKFGVTQPNIQRIGNSGRIQIELPGAKDIERVT 234 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172 +T + + + + +++ +L +++ + + +Q D Sbjct: 235 KLITSKAELQFWGVYTNAEIQNFFFAANSKVAEMLKDDSVLEQEQDSAKQ-----DDIDD 289 Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP------------- 219 +G + + S + Q +L ++ + + V Sbjct: 290 LLGEEADSTKVQKSLFTYLYPNVAQSQQQLSSVVASARVLDTAMVNDLLSKKEVRALLPN 349 Query: 220 --------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + K + + DK I G + A FD P V Sbjct: 350 EIKYAKFLWDYKAVEGADGAEIISLYAIKGNRNDKPTIEGDVILDAAQVFDQLNK-PEVS 408 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGI 330 ++ + G +++ ++T DN+G +AVVLD V TAP +NQ I G+ ISG + T+ A Sbjct: 409 MTMNSSGTKQWAKMTADNVGNFVAVVLDDYVYTAPSVNQVISGGRTSISGGSMTVAEAED 468 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 ++ +L+AG LP I++ VG LG ++I + ++L++L+MI+ YGK G A Sbjct: 469 ISTVLKAGKLPATARIIQIEVVGPSLGQEAIDASFLSFGLAIILVLLWMILYYGKAGAFA 528 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + ++ +N++ +L+ A LTLP IAGI+L IG++VD+N+++ ERI+E K + + Sbjct: 529 NVALIVNILFIFGVLASFNAVLTLPGIAGIILTIGMSVDANVIIFERIKEGLFKKKGLKQ 588 Query: 451 SLDM--GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508 S++ A S I D+NIT L+ ++L+ FG G ++GFA+T+ + I S+FTA+ I R Sbjct: 589 SVEEGFSIKGALSAIIDANITTLLTGIILYVFGTGPIKGFALTLMIGIATSLFTAVFITR 648 Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 ++ + + + + I ++F++ R IS I + +F+ G Sbjct: 649 LLIDSSVNKGSNLTFNTSFSKG---WFQNINVEFLKKRKIAYIISGTIIIGGLISIFSIG 705 Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 L G+DFKGG V ++ ++ + V L+ + + + Y+ + Sbjct: 706 LKQGVDFKGGRSYVVRFDQDMNATEVAGTLKDAFGSAPEVKTYGQANQLKITTVYKIEEE 765 Query: 629 V------AQTRVLEMVKKKITEIVPLSTIQNTEIVG----------PKISRELIRKGIVG 672 Q + +K + + + E G P I+ ++ + Sbjct: 766 GTEVDEEVQNTLFTGLKPYLGDTTYENFKPGFEKQGAGVMSFMKVEPTIADDIKTSALYA 825 Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725 V S I + +YI +RF+ F+LGA+ + D+ LG F++ F +E + +AA Sbjct: 826 VFGSLIVVFLYILLRFRKVSFSLGAVIAVFHDVLIVLGVFSITYSFMPFDMEIGQSFIAA 885 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 +LT++GYS+ND VV++DR+R+ Y + ++D +++ TLGR++ TS+ + +L Sbjct: 886 ILTVVGYSLNDTVVIFDRIREFAGSYPN-WKYSKVVDSALSSTLGRTINTSLTTLLVMLA 944 Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++GG I F + G+VV SS+F+A PI+ K Sbjct: 945 IFLFGGDSIKGFMFALIVGVVVGTYSSLFVATPIMYDSSKKELKKK 990 Score = 57.4 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 26/193 (13%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 ++LGLDL+GG + +L+V + + + + L Sbjct: 82 DKEMNLGLDLKGGINAILQVSVKEVLKSLSNDSKNVAFNT------------------AL 123 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVD-PKKNLLVTTTEKEISIVLSQ------NNID 153 AD R KE+ + + LF + + T I + + Sbjct: 124 ENADERQKESNLNYLDLFFEEFQKVAGDTKLSDPSIFGTKALSEKISFDEANITVRETLQ 183 Query: 154 QVISHAIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 + I+ +I + E++R RID+ G+++ + S RI I+LPG +D R+ +L+ + A++ Sbjct: 184 EEINSSIGTAFEVLRSRIDKFGVTQPNIQRIGNSGRIQIELPGAKDIERVTKLITSKAEL 243 Query: 213 SFHKVLPNNSKKG 225 F V N + Sbjct: 244 QFWGVYTNAEIQN 256 >gi|313159379|gb|EFR58743.1| membrane protein, putative [Alistipes sp. HGB5] Length = 1008 Score = 353 bits (905), Expect = 7e-95, Method: Composition-based stats. Identities = 210/847 (24%), Positives = 365/847 (43%), Gaps = 74/847 (8%) Query: 56 LVLE---VDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQ--IQNKITLSFADSR 106 + LE D + + + LRS + G+ ++ + ++I + + Sbjct: 164 ITLESSDADVEKILKRETDAAIAASFNVLRSRIDHFGVTQPNIMRLPNSHRILVELPGVK 223 Query: 107 FKENIADKVTLFLQG-------VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 + + D + L + + E + A Sbjct: 224 EPQRVRDLLQGTASLEFWLTYDAREVLPALAAADKFIKAELSEAPAAGQPEVASVEAAAA 283 Query: 160 IEQSMEIIRQRIDQIGI----SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 + +IG R L DP A + Sbjct: 284 AGTPAGEAEGLLAEIGSDTTAVAEAEHTDRYDRAKNPLFAVLDPGFAGGAAIGAAYKADM 343 Query: 216 KVLPNNSKKGFMFGVRFLRDS------------------DGNQYLVEDKVEISGIHLNGA 257 + + + + + K + G + A Sbjct: 344 AAVNEYLANPAVRELFPADIAFKWGVKGDDKIDGRFYLYAIRISTPDGKAPLDGSVVTEA 403 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 + + VV +S + G + + +T +NIGK +A+VLDG V +AP +N I G + Sbjct: 404 REQYAQRGANAVVSMSMNGEGTQEWARLTGENIGKCIAIVLDGYVYSAPRVNTKIDKGSS 463 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 +ISG+FTI+ A LA +L +G +P I+++ VG LG +SI G + + +L++L Sbjct: 464 EISGDFTIQEAKDLANVLNSGKVPAPAKIIQDTVVGPSLGQESINAGMLSFLIAFILVLL 523 Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 +M + Y G ++D ++ NV L + +L GA LTLP IAGIVL +G+AVD+N+++ ER Sbjct: 524 YMGLFYKTAGWMSDIALLTNVFLLMGVLVSFGAVLTLPGIAGIVLTMGMAVDANVIIYER 583 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 I+EE R + + ++ GFS+AYS I D N+T +I +VLF FG G V+GFA T+ + I+ Sbjct: 584 IKEELRGGKGLSLAIKDGFSKAYSAIIDGNLTTIITGIVLFIFGNGPVQGFATTLIIGII 643 Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557 S F+A+ I R ++ +I+ S F F+R R +++ Sbjct: 644 TSFFSAVFITRLLIEWIVAKWGNISFSRKWSENFL---TNTHFDFIRVRKVAYTVAVALL 700 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD---------ISF 608 S GLN G +F GG + ++PV VR NL + Sbjct: 701 ALSCISFVARGLNLGAEFTGGRAYVIRFDKPVSAEEVRQNLGQVFAQHADADASAISFEV 760 Query: 609 QNFDGEKNFLVRLQYQPGD--SVAQTRVLEMVKKKITEIVPLSTIQNT------------ 654 + + E + QY+ D A V +++ + + Sbjct: 761 KQYGNENQMRIVTQYRYDDTSDEATAEVEQIIYDAMKSLYSYDISFEQFRNTQTDVNGIL 820 Query: 655 --EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711 + +GP I++++ I V+ S IA+ +YI RF +W +A GA L ++ +G F Sbjct: 821 TADKIGPSIAKDMTWNAIYSVLFSLIAIGLYITFRFKRWQWASGATIALAVNALFIIGLF 880 Query: 712 AL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 ++ F +E N +AA+LT+IGY++ND VVV+DR+R+ + +Y + ++ ++ +I Sbjct: 881 SMLYGFVPFNLEVNQAFIAAILTIIGYAINDTVVVFDRIREYLGMYPKR-NLKENVNNAI 939 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 N TL R++ TS +++L + +GG I F + G++V ++IFIA PI + Sbjct: 940 NSTLSRTINTSGTTLVTLLAIFFFGGETIRGFIFALTVGVIVGTVATIFIATPIAYDLMV 999 Query: 826 WRAKNAR 832 RAK + Sbjct: 1000 KRAKLDK 1006 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 13/180 (7%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 + ++LGLDL+GG +++LEV +D + ++ +F++ ++++ +K Sbjct: 78 EKELNLGLDLKGGMNVMLEVQVEDVIKALAGDSQND-PAFVEAIAEANAALKEGTSK--- 133 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 +++ ++ D K L ++ I+ + AI Sbjct: 134 --DYISDFVKAYQRLSNGGSLAAVFVSPDRKDITLESSDADVEKIL------KRETDAAI 185 Query: 161 EQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219 S ++R RID G+++ I R SHRIL++LPG ++P R+R LL TA + F Sbjct: 186 AASFNVLRSRIDHFGVTQPNIMRLPNSHRILVELPGVKEPQRVRDLLQGTASLEFWLTYD 245 >gi|325104766|ref|YP_004274420.1| protein-export membrane protein SecD [Pedobacter saltans DSM 12145] gi|324973614|gb|ADY52598.1| protein-export membrane protein SecD [Pedobacter saltans DSM 12145] Length = 988 Score = 353 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 202/824 (24%), Positives = 368/824 (44%), Gaps = 59/824 (7%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMR--QIQNKITLSFADSRFKENIAD 113 ++ + LR+ + K G+ +++ + N+I + +E + Sbjct: 164 AKVKTYLEKQATSAIERSFNILRTRIDKFGVTQPNIQLQEGSNRILVELPGVTDQERVRK 223 Query: 114 KVTL-----------------FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 + +Q +N+ L K ++ ++ ++ Sbjct: 224 LLQGSAKLEFYETFDNHEIFPLIQNINNILAAKQPKEATKKAEATTTAVDTTKGAKPALL 283 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ-------------LPGEQDPSRLR 203 S + + + + + + + L +D +++ Sbjct: 284 SAKKDSTSKDSSENMAALAKANPLFSVLSPATYQGANGEQGLRPGPVVGYVALKDTAKVN 343 Query: 204 QLLGTTA--KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 + L + V K + + + + G ++ A +F Sbjct: 344 EYLREPEIKAVIPPNVKLMWGVKSISKDAKVYELYAIKGSGINNGAVLEGDVISNAREDF 403 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV--------LDGRVLTAPVINQAIP 313 D K P V +S + GAR + +T G P LD V TAP + IP Sbjct: 404 DQKG-NPEVTMSMNSTGAREWKRITAAAAGDPRNEDDNKCIAIVLDDMVYTAPRVGGEIP 462 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 +G + ISGNFT+E LA +L+AG LP IV E VG LG +SI KG + VAGL+ Sbjct: 463 NGVSSISGNFTVEETKDLANVLKAGKLPAPAKIVGEYVVGPTLGKESIEKGVISSVAGLI 522 Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433 +++LFM+ Y + G++A+F++ N+ + +++ LGA TLP IAG+VL IG+AVD+N+L Sbjct: 523 VVLLFMVFYYNRSGMIANFALLFNMFFLVGIMASLGAVWTLPGIAGLVLTIGMAVDANVL 582 Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493 + ERI+EE +++ ++ GF +YS I DS IT LI ++L G G + GFA+T+ Sbjct: 583 IYERIKEELELGKNLKTAVVDGFKNSYSAILDSQITTLIVGIILLITGTGPIYGFAVTLV 642 Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553 + I +S+FTAI I R ++ + K + + F I F++ R IS Sbjct: 643 IGIFLSIFTAIFITRIVIDNRLEKGKDLPLYTSFTKNLFKGSP---IDFVKDRKKYYIIS 699 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 + I + + G +YG+DF+GG V N+ + VR L D G Sbjct: 700 SVIIIAGLASMLIKGFSYGVDFQGGRTYVVDFNKEISTIDVREALTKSFENDAPEVKSYG 759 Query: 614 EKNFLVRLQYQPGDSVAQTR-VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + +S + V + + + I++ + VGP ++ ++ I Sbjct: 760 SGVRITTAYLIEDNSDQAEKTVATKLNDGLKTLNTPYEIKDAQKVGPTVANDIKVSAIWS 819 Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725 V+ + + +Y++IRF+ F + I L+ D+ L F++ F ++ + T +AA Sbjct: 820 VLAAIAGIFLYVYIRFRKVSFGIATIIALLHDVLIVLAIFSIFDGILPFSLDIDQTFIAA 879 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRSVYTSMAAFISVL 784 +LT+ GYS+ND VV++DR+R+ + + +I+ ++N TL R+V T M+ ++ Sbjct: 880 ILTVAGYSINDTVVIFDRVREYLSDERNRNQNMATIINNALNSTLSRTVVTGMSTIFVLI 939 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++GG ++ F+ M GI+V SS+F+A P+++ + Sbjct: 940 ILFIFGGEILRGFSFAMLIGIIVGTYSSLFVATPVVVEFIRGKK 983 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 99/241 (41%), Gaps = 8/241 (3%) Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + + ++ + D+ + + G+ + K ++ + I Sbjct: 436 NEDDNKCIAIVLDDMVYTAPRVGGEIPNGVSSISGNFTVEETKDLANVLKAGKLPAPAKI 495 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 +VGP + +E I KG++ + I +L+++ + + A L+ ++ +G Sbjct: 496 VGEYVVGPTLGKESIEKGVISSVAGLIVVLLFMVFYYN-RSGMIANFALLFNMFFLVGIM 554 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A G + L +A ++ IG +V+ V++Y+R+++ ++L + + + + Sbjct: 555 ASLGAVWTLPGIAGLVLTIGMAVDANVLIYERIKEELEL---GKNLKTAVVDGFKNSYSA 611 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + + I + + + G I FA+ + GI SIF A I + D R + Sbjct: 612 ILDSQITTLIVGIILLITGTGPIYGFAVTLVIGI----FLSIFTAIFITRIVIDNRLEKG 667 Query: 832 R 832 + Sbjct: 668 K 668 Score = 57.0 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 27/222 (12%) Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQI 94 + + I+LGLDL+GG ++ +E+D + +D + + + ++ Sbjct: 67 QYVKEREIALGLDLKGGMNVTMEIDLSALLKSLANNPTDANFNQALENAQEKLKTNSKEG 126 Query: 95 QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV-----LSQ 149 V+LF+ + T + + Sbjct: 127 -------------------LVSLFVSEFEKLSPNVKLASFYSTKDNSSDLKIDDSNAKVK 167 Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGT 208 +++ + AIE+S I+R RID+ G+++ IQ S+RIL++LPG D R+R+LL Sbjct: 168 TYLEKQATSAIERSFNILRTRIDKFGVTQPNIQLQEGSNRILVELPGVTDQERVRKLLQG 227 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 +AK+ F++ N+ + + + + + + + Sbjct: 228 SAKLEFYETFDNHEIFPLIQNINNILAAKQPKEATKKAEATT 269 >gi|167751995|ref|ZP_02424122.1| hypothetical protein ALIPUT_00237 [Alistipes putredinis DSM 17216] gi|167660236|gb|EDS04366.1| hypothetical protein ALIPUT_00237 [Alistipes putredinis DSM 17216] Length = 1008 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 217/840 (25%), Positives = 381/840 (45%), Gaps = 72/840 (8%) Query: 61 DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADK 114 + + + D LRS + G+ ++++ ++I + + E + Sbjct: 173 EVEKILQEETDAAIDASFNILRSRIDHFGVTQPNIQRLPNSHRILVELPGVKEPERVRKL 232 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ-------SMEII 167 + + + + ++ + L+ D + + + + + Sbjct: 233 LQGTASLEFWTTYNNTELVRALEQADQLLRDELAAGATDAAVEETLTEEQPTAAGTEDTT 292 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDP--SRLRQLLGTTAKMSFHKVLPNNSKKG 225 I ++ + + S + E++P S L G A + V + G Sbjct: 293 ESLIAEVQNNAPAAEEAASASGASRYTREENPLFSLLNPYDGGGAVVGSVAVADTATVAG 352 Query: 226 F----------------MFGVRFLRDSDGN-------QYLVEDKVEISGIHLNGATANFD 262 + +G++ ++G + K + G + A + Sbjct: 353 YLRMDAVRELLPSDVRFEWGIKGEPQNNGRFSLYALKVSTPDGKAPLDGSVIVDARETYA 412 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + + V +S + G + + +T DNIG+ +A+VLDG V +APV+ Q I G ++ISGN Sbjct: 413 ERGAEAKVSMSMNSEGIQDWARLTGDNIGRCIAIVLDGYVYSAPVVRQKIEGGSSEISGN 472 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 FTI+ A LA +L++G +P I+++ VG LG +SI G + V VL++L+M + Sbjct: 473 FTIQEAKDLANVLKSGKVPAPARIIQDTVVGPSLGQESINAGILSFVLAFVLVLLYMGLY 532 Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 Y G ++D ++ NV L L +L GA LTLP IAGIVL +G+AVD+N+++ ERI+EE Sbjct: 533 YKTAGWLSDIALLCNVFLLLGVLVSFGAVLTLPGIAGIVLTMGMAVDANVIIYERIKEEL 592 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 R + + ++ GFS+AYS I D N+T +I +VLF FG G V+GFA T+ + IL S+F Sbjct: 593 RGGKGLSLAIKDGFSKAYSAIIDGNLTTIITGIVLFIFGNGPVQGFATTLIIGILTSLFC 652 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 +I I R ++ ++ S + F+ + I+ S Sbjct: 653 SIFITRLLIEGVVNKWGKISFSRKWSEN---LMGNAHFDFLGKSKISYIVMIVVLAVSCV 709 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD-------ISFQNFDGEK 615 GLN G +F GG + +RPV VR L+ + G + + E Sbjct: 710 SFAVRGLNMGAEFTGGRAYVIRFDRPVQAEEVRMKLQDVFSGYEDAANVSFEVKQYGNEN 769 Query: 616 NFLVRLQYQPGD--SVAQTRVLEMVKKKITEIVPLSTIQNT--------------EIVGP 659 + QY+ D A + V ++ + + + +GP Sbjct: 770 QMRIVTQYKYDDTSDEATSEVDRILYDALHGLYGYPITFENFRNTQNDINGILTADKIGP 829 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL----- 713 I++++ I V+ S IA+ +YI +RF KW +A GA T L + +G F+L Sbjct: 830 SIAKDMTWGAIWSVLFSLIAIGLYISLRFKKWQYATGATTALAFNALVVIGVFSLCYGWL 889 Query: 714 -FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F +E N +AA+LT+IGY++ND VVV+DR+R+ + LY R+ ++ ++N TL R+ Sbjct: 890 PFNLEVNQAFIAAILTIIGYTINDTVVVFDRIREYLVLYPKR-DLRENVNNALNATLSRT 948 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + TS +++L + +GG I F +A G+VV S++F+A PI + + Sbjct: 949 INTSGTTLVTLLAILFFGGETIRGFIFALALGVVVGTLSTLFVATPIAYGLMKREGLGKK 1008 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 24/216 (11%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFL-----QMYSDELRSFLKKEGIGVFSMRQIQ 95 + I+LGLDL+GG +++LEV +D + +E + K +++ Sbjct: 80 EKEINLGLDLKGGMNVMLEVQVEDVLKALAGDSAHDPMFEEAIARANKA------LKEGT 133 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 N FA +V+ ++ D K ++ + I+ + Sbjct: 134 NNYIGEFA------KAYREVSGGAPLAALFVSPDRKDITPNSSDSEVEKIL------QEE 181 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 AI+ S I+R RID G+++ IQR SHRIL++LPG ++P R+R+LL TA + F Sbjct: 182 TDAAIDASFNILRSRIDHFGVTQPNIQRLPNSHRILVELPGVKEPERVRKLLQGTASLEF 241 Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 N + L + + VE + Sbjct: 242 WTTYNNTELVRALEQADQLLRDELAAGATDAAVEET 277 >gi|225011913|ref|ZP_03702351.1| protein-export membrane protein SecD [Flavobacteria bacterium MS024-2A] gi|225004416|gb|EEG42388.1| protein-export membrane protein SecD [Flavobacteria bacterium MS024-2A] Length = 985 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 208/808 (25%), Positives = 364/808 (45%), Gaps = 48/808 (5%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123 ++ + + LR + K G+ +++++ +I + ++ E + + + Q Sbjct: 185 IDESIVSAFEVLRKRIDKFGVTQPNIQRLGTSGRILVELPGAKDVERVQNLLQSTAQLEF 244 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + L+ E + + + V+ + + EI D + Sbjct: 245 WE--TYKNDELITFLVEANQYLKTTNDKSKAVVEEEKDDASEIDDLLADVSAQDSISASG 302 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243 I G Q L Q +++ + +K R+++ + G Sbjct: 303 SNPILDRIVGQGFQGGPVLAQFASRDSELILDYLNQPQVRKLLPSEYRYIQFAWGKPVAN 362 Query: 244 EDKVEI-------------SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD-- 288 D VE+ SG + A FD + V + Sbjct: 363 SDVVELYALKSNRDNLAPLSGGVVVDALQTFDQVGNAAVSMQMDSRGARIWESMTGKAFK 422 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 V+ D V + I G+++I+GNFT+ A LA +LRAG LP I++ Sbjct: 423 EASNIAIVLDDIVYSAPGVSSGPIAGGRSEITGNFTLNEAIDLANVLRAGKLPASAEIIQ 482 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 VG LG ++I G + + L+ ++ +MI YG G+ AD ++ LN++L +L+ L Sbjct: 483 SEIVGPSLGQEAIEAGIYSFIIALIFVLGWMIFYYGSSGIYADIALILNILLIFGILAGL 542 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA LTLP IAG+VL IG++VD+N+L+ ER+REE K + + ++ GF+ A S+I D+NI Sbjct: 543 GAVLTLPGIAGVVLTIGISVDANVLIFERVREELSKGKGIRKAIADGFNNALSSILDANI 602 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T + ++LF FG G ++GFA T+ + I S+FTAI I R ++ K S Sbjct: 603 TTGLTALILFIFGTGPIKGFATTLLIGIGTSLFTAIFITRILVDSRNEKGKDVSFSTKAT 662 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 I I F++ R +S + + S+ L GLN G+DF GG V +P Sbjct: 663 KGLLS---NINISFLQRRKVAYIVSSILILVSLASLTFQGLNQGVDFVGGRSYTVRFEQP 719 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG------DSVAQTRVLEMVKKKI 642 V+ + + + L + + + F + + +Y+ D Q ++ ++ + Sbjct: 720 VNPTEIGAVLSNEFGSAEA-KTFGEDNQLKITTKYKVDVEGIAVDEEIQNKLFTALQSYL 778 Query: 643 TEIVPLSTIQNTEIV-----------GPKISRELIRKGIVGVIISAIAMLIYIWIRF-KW 690 + + N GP I+ ++ + VI S I + +YI +RF KW Sbjct: 779 PDGMSYDNFVNGSSQKEIGIMSSIKVGPTIADDIKSNSFLAVIGSLIVVFLYILLRFQKW 838 Query: 691 YFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 F+LGA+ + D+ LG F++ F +E N +AA+LT+IGYS+ND VVV+DR+ Sbjct: 839 QFSLGAVVAVFHDVLIVLGIFSITYTFMPFSMEINQAFIAAILTVIGYSLNDTVVVFDRI 898 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ + +T F +D ++N TL R++ TS+ I +L + ++GG I F + G Sbjct: 899 REFLAEHTK-WEFNTTVDAALNSTLSRTLNTSLTTLIVLLAIFIFGGESIRGFMFALIIG 957 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++V SS+FIA P++ +A + Sbjct: 958 VLVGTYSSVFIATPVMYDTQKKKALEQK 985 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 20/200 (10%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 ++ GLDL+GG +++L++ D ++G + + + + K + + Sbjct: 79 AKDKELNKGLDLKGGINVILQISIRDILSGLAENTRNPIFN--KALDEADILQKSTDDPY 136 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 SF V S + T EI+ ++ V+ Sbjct: 137 IESFF-------------NAFDAVKSGEKLASPDIFANRTLSDEINFDMTDQETQVVVRR 183 Query: 159 AIEQSM----EIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 I++S+ E++R+RID+ G+++ IQR S RIL++LPG +D R++ LL +TA++ Sbjct: 184 KIDESIVSAFEVLRKRIDKFGVTQPNIQRLGTSGRILVELPGAKDVERVQNLLQSTAQLE 243 Query: 214 FHKVLPNNSKKGFMFGVRFL 233 F + N+ F+ Sbjct: 244 FWETYKNDELITFLVEANQY 263 >gi|149369780|ref|ZP_01889631.1| protein-export membrane protein SecD/SecF [unidentified eubacterium SCB49] gi|149356271|gb|EDM44827.1| protein-export membrane protein SecD/SecF [unidentified eubacterium SCB49] Length = 1019 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 197/819 (24%), Positives = 356/819 (43%), Gaps = 66/819 (8%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123 ++ + + LR + K G+ +++++ +I + ++ + D VT Q Sbjct: 182 IDESITSAFEVLRKRIDKFGVTQPNIQRLGESARILVELPGAKDVSRVTDLVTKTAQLEF 241 Query: 124 SKLNVDPKKNLLVTTTEKEIS---------------------IVLSQNNIDQVISHAIEQ 162 + + V E +I + E+ Sbjct: 242 WDVYKSDEIAGFVMQAESKIREINKAKNPVKEEVEAVQEEVEEAAQDGDDSLDDLLGGEE 301 Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK----------- 211 E + I+ ++ S +I E+D + + L Sbjct: 302 VAEEEVDASVEYPITSKMVRPGVSGSPIIATFYEKDADEILEYLNMPQVRSLLKGDMRYA 361 Query: 212 --MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 + + + + +D +SG + A + V Sbjct: 362 NFVWEQPTTLEVINADGEEEEIKVVNLYALKGNKQDVPPLSGDVVVDALQTYGASGEVAV 421 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN---QAIPSGKAQISGNFTIE 326 + + N+ + ++ V+ + IP G + I+GNF+I Sbjct: 422 SMQMNGKGAKVWQEMTNQANLNQSQIAIVLDDVVYSAPGVTSPGGIPGGNSSITGNFSIL 481 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +LRAG LP I++ VG LG +++ G + L+ ++L+MI+ YGK Sbjct: 482 EAQDLANVLRAGKLPASAEIIQGEVVGPTLGKEAVRSGMLSFGIALLFVLLWMILYYGKA 541 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G AD ++ +N++ +L+ LGA LTLP IAG+VL IG++VD+N+L+ ERI+EE K + Sbjct: 542 GAFADVALAVNILFIFGVLAGLGAVLTLPGIAGVVLTIGMSVDANVLIFERIKEEMYKGK 601 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S ++ GFS A S+I D+NIT + ++L FG G ++GFA T+ + IL S+FTAI I Sbjct: 602 SQKDAIKDGFSNALSSILDANITTGLTGIILLVFGTGPIKGFATTLLIGILTSLFTAIFI 661 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566 R + + K F + I F+ R IS + + S+ LFT Sbjct: 662 TRLFVDRYTKNGKSLDFSTGLTKNFLR---NVNIDFLGKRKMAYIISTVLIVVSLGSLFT 718 Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRL 621 +GLN G+DF GG V ++ VD + V +L + + + + V Sbjct: 719 NGLNQGVDFVGGRTYTVRFDQDVDANKVEESLVEVFGSAEAKTYGGDNQLKITTKYKVNE 778 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV-----------GPKISRELIRKGI 670 D + ++ +K + + + + P I+ ++ + + Sbjct: 779 TGTAIDQEIENKLFTGLKPYLPGTMTFEAFTSDDATKVAGRMESYKVSPSIADDIKKSSV 838 Query: 671 VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAV 723 ++ S + + +YI +RF +W F+LGA++ + D+ LG F+L F +E + + + Sbjct: 839 WAILGSLLVVFLYILLRFRRWQFSLGAVSAVFHDVIIVLGIFSLTYSFMPFSMEIDQSFI 898 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 AA+LT+IGYS+ND VVV+DR+R+ + TS +I++++N TL R++ TS+ I + Sbjct: 899 AAILTVIGYSLNDTVVVFDRIREYFNEH-TSWPLGKVINEALNSTLSRTLNTSLTTLIVL 957 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 L + ++G I + G++V SS+FIA P++ Sbjct: 958 LSIFLFGAESIKGLIFALIIGVLVGTYSSLFIATPVMFD 996 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 101/251 (40%), Gaps = 11/251 (4%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + ++ S + L+ + + G + AQ + K Sbjct: 435 EMTNQANLNQSQIAIVLDDVVYSAPGVTSPGGIPGGNSSITGNFSILEAQDLANVLRAGK 494 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + I E+VGP + +E +R G++ I+ + +L+++ + + A L Sbjct: 495 LPASAE---IIQGEVVGPTLGKEAVRSGMLSFGIALLFVLLWMILYYG-KAGAFADVALA 550 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++I G A G L +A V+ IG SV+ V++++R+++ M S +D I Sbjct: 551 VNILFIFGVLAGLGAVLTLPGIAGVVLTIGMSVDANVLIFERIKEEMY---KGKSQKDAI 607 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + L + ++ ++ + + V+G I FA + GI+ +S+F A I Sbjct: 608 KDGFSNALSSILDANITTGLTGIILLVFGTGPIKGFATTLLIGIL----TSLFTAIFITR 663 Query: 822 FIYDWRAKNAR 832 D KN + Sbjct: 664 LFVDRYTKNGK 674 Score = 60.9 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96 + + ++ GLDL+GG +++L+V D + G D + + Q+ Sbjct: 74 NTAKEKELNKGLDLKGGINVILQVSVKDILQGLANNTKDPAFNL--ALKNADELQKSSQD 131 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 SF + A L + N + + ++ + E+ +++ ++ I Sbjct: 132 TYLQSFFTAFD----ALDGENSLASPDIFFNKNLEDDISLDQPNDEVKVII-----ERKI 182 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 +I + E++R+RID+ G+++ IQR S RIL++LPG +D SR+ L+ TA++ F Sbjct: 183 DESITSAFEVLRKRIDKFGVTQPNIQRLGESARILVELPGAKDVSRVTDLVTKTAQLEFW 242 Query: 216 KVLPNNSKKGFMFGVR 231 V ++ GF+ Sbjct: 243 DVYKSDEIAGFVMQAE 258 >gi|213962437|ref|ZP_03390699.1| putative protein-export membrane protein SecD [Capnocytophaga sputigena Capno] gi|213954763|gb|EEB66083.1| putative protein-export membrane protein SecD [Capnocytophaga sputigena Capno] Length = 997 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 198/812 (24%), Positives = 362/812 (44%), Gaps = 52/812 (6%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 V+ + + LR + K G+ +++++ N +I + ++ + + Q Sbjct: 187 VDESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQALLQSTAQLEF 246 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + + +++ + + A QS + +S + Sbjct: 247 WETYKNTDVFPYLQALNEQLKSTAKNTDKVKDTLAAATQSGSSAIDSLLTDVKKDSVPTQ 306 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGN 239 + + P+ +L + +V + ++++R + G Sbjct: 307 KTDGANPLFDLFKSAPNYESPVLFAVSLKDTAQVNSYLNSSEAKRLIPASLQYVRFAWGK 366 Query: 240 Q-------------YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 ++ ++G + ++P V + D GAR + +T Sbjct: 367 PDKKTSLIELYALRGNRDNTPPLTGNVVTQ-AEQTYDVRNQPAVSMQMDGKGARIWEVLT 425 Query: 287 RDNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343 + + + V AI G+++I+G+FT+ A LA +LRAG LP Sbjct: 426 GKAFSQNTNIAIVLDNIVYSAPGVTTGAISGGRSEITGHFTLNEAVDLANVLRAGKLPAS 485 Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403 +IV+ VG LG ++I G + + + I +MI YG+ G+ AD ++ N++L Sbjct: 486 ADIVQSEIVGPSLGQEAIDSGMNSFLIATIFIFAWMIFYYGRAGVYADLALVFNILLIFG 545 Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463 +L+ +GA LTLP IAGIVL IG+AVDSN+L+ ER +EE RK +++ ++ GF A S+I Sbjct: 546 VLASIGAVLTLPGIAGIVLTIGMAVDSNVLIFERSKEELRKGKNINQAVVDGFKHALSSI 605 Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 DSNIT + ++L FFG G ++GFA T+ + I ++F+AI I R + + + K + Sbjct: 606 LDSNITTALTALILLFFGSGPIQGFATTLLIGIATTLFSAIFITRLFIDYSVEKKHSLTF 665 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 I + F+ R G SI+ S+ I LFT GL+ GIDF GG + Sbjct: 666 STPITKN---WFSNINLNFIGKRKIGYAFSIILSVIGIISLFTRGLDQGIDFVGGRTYQI 722 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMV 638 V+ + + L+ + + V+ + D+ Q + + + Sbjct: 723 RFEHEVNPTQIADALKLTLGNVEVKTFGAPNQVKISTKYKVQEESTEVDNEVQQLLFKGL 782 Query: 639 KKKITEIVPLSTIQNTEIV-----------GPKISRELIRKGIVGVIISAIAMLIYIWIR 687 +K + E + GP I+ ++ VI S I + +YI R Sbjct: 783 QKFLPEGTSFDSFAKATSTDKIGIMQSMKVGPTIAEDIKSSAFWSVIGSLIVIGLYILFR 842 Query: 688 FK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVV 740 F+ W F++GAI + D+ LG ++L F +E + +AA+LT++GYS+ND V++ Sbjct: 843 FRKWQFSMGAIVSSAHDVLMVLGIYSLTYSIMPFNMEIDQAFIAAILTVVGYSLNDTVII 902 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 YDR+R+ M+ S R+ I+ ++N TL R++ TS ++ + ++GG + F Sbjct: 903 YDRIREVMREPHWS---REKINHALNTTLSRTLNTSFTTLAVLVTIFIFGGETLRGFMFA 959 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 M G+ + SSIF+AAP++ A + + Sbjct: 960 MIIGVFIGTYSSIFVAAPLIYDTVKDEADHTK 991 Score = 58.9 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 24/194 (12%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 + ++ GLDL+GG +++L++ D + G D + + +L Sbjct: 85 EKELNRGLDLKGGINVILQISVKDILKGLADNSKDPIFNK------------------SL 126 Query: 101 SFADSRFKENIADKVTLFLQG-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 + AD + ++ + LF + + + T +I+ +S + + +I Sbjct: 127 AEADEQLRKTDKTYLDLFFEAYAKNGGKLASPDVFANKTLSDQINFQMSDSEVRPIIRKR 186 Query: 160 IEQSM----EIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 +++S+ E++R+RID+ G+S+ IQR S RIL++LPG +D +R++ LL +TA++ F Sbjct: 187 VDESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQALLQSTAQLEF 246 Query: 215 HKVLPNNSKKGFMF 228 + N ++ Sbjct: 247 WETYKNTDVFPYLQ 260 >gi|256821004|ref|YP_003142283.1| bifunctional preprotein translocase subunit SecD/SecF [Capnocytophaga ochracea DSM 7271] gi|256582587|gb|ACU93722.1| protein-export membrane protein SecD [Capnocytophaga ochracea DSM 7271] Length = 995 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 191/810 (23%), Positives = 356/810 (43%), Gaps = 49/810 (6%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 V+ + + LR + K G+ +++++ N +I + ++ + + Q Sbjct: 187 VDESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQSLLQSTAQLEF 246 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + + +++ + + A QS + +S + Sbjct: 247 WETYKNTDVFPYLQALNEQLKSTAKTTDKVKDTLTAATQSGSSAIDSLLTDVKKDSVPTQ 306 Query: 184 L--------------GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 ++ +D +++ + + K + Sbjct: 307 QGKGNPLFDLIKANSYEGSPVLFTVSLKDTAQVNSYINSPEAKHLIPASLQYVKFAWGKP 366 Query: 230 VRFLR--DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 + + + ++ ++G + A +D + V + + Sbjct: 367 DKKTSLIELYALKGNRDNTPPLTGNVVTQAEQTYDVRNQPAVSMQMDGKGARIWEALTGK 426 Query: 288 DNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 ++ ++ + AI G+++I+G+FT+ A LA +LRAG LP + Sbjct: 427 AFTQNTNIAIVLDNIVYSAPGVTTGAISGGRSEITGHFTLNEAVDLANVLRAGKLPASAD 486 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 IV+ VG LG ++I G + + + I +MI YG+ G+ AD ++ N++L +L Sbjct: 487 IVQSEIVGPSLGQEAIDSGMNSFLIATIFIFAWMIFYYGRAGIYADLALVFNILLIFGVL 546 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 + + A LTLP IAGIVL IG+AVDSN+L+ ER +EE RK +++ ++ GF A S+I D Sbjct: 547 ASIEAVLTLPGIAGIVLTIGMAVDSNVLIFERSKEELRKGKNINQAVVDGFKHALSSILD 606 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 SNIT + ++L FFG G ++GFA T+ + I ++FTAI I R + + + K + Sbjct: 607 SNITTALTALILLFFGSGPIQGFATTLLIGIATTLFTAIFITRLFIDYSVEKKHTLTFTT 666 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + + F+ R G SI+ SI I L T GL+ GIDF GG + Sbjct: 667 PITKN---WFKNVDLNFIGKRKIGYAFSIILSIIGIISLSTRGLDQGIDFVGGRTYQIRF 723 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 V+ + V L++ + + + Q + + E++ K + + Sbjct: 724 EHEVNPTQVADALKTTLGNVEVKTFGAPNQVKIATKYKVQEESTEVDNEIQELLYKGLQK 783 Query: 645 IVP---------------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 +P I + VGP I+ ++ VI S I + +YI RF+ Sbjct: 784 FLPEGTSFDSFAKASSTDKIGIMQSMKVGPTIAEDIKSSAFWSVIGSLIVIGLYILFRFR 843 Query: 690 -WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 W F++GAI + D+ LG ++L F +E + +AA+LT++GYS+ND V++YD Sbjct: 844 RWQFSMGAIVSSAHDVLMVLGIYSLTYSIMPFNMEIDQAFIAAILTVVGYSLNDTVIIYD 903 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ M+ S R+ I+ ++N TL R++ TS ++ + ++GG + F M Sbjct: 904 RIREVMREPHWS---REKINHALNATLSRTLNTSFTTLAVLVTIFIFGGETLRGFMFAMI 960 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G+++ SSIF+AAP++ A + + Sbjct: 961 IGVLIGTYSSIFVAAPLIYDTVKDEADHTK 990 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 109/272 (40%), Gaps = 24/272 (8%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 ++ GLDL+GG +++L++ D + G D + + +L+ Sbjct: 86 KELNRGLDLKGGINVILQISVKDILRGLADNSKDPIFNK------------------SLA 127 Query: 102 FADSRFKENIADKVTLFLQG-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 AD + ++ + LF + + + T +I+ +S + + +I + Sbjct: 128 EADEQLRKTDKTYLDLFFEAYAKNGGKLASPDVFANKTLSDQINFQMSDSEVRPIIRKRV 187 Query: 161 EQSM----EIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 ++S+ E++R+RID+ G+S+ IQR S RIL++LPG +D +R++ LL +TA++ F Sbjct: 188 DESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQSLLQSTAQLEFW 247 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 + N ++ + S + + + K + Sbjct: 248 ETYKNTDVFPYLQALNEQLKSTAKTTDKVKDTLTAATQSGSSAIDSLLTDVKKDSVPTQQ 307 Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307 G F + ++ + TA V Sbjct: 308 GKGNPLFDLIKANSYEGSPVLFTVSLKDTAQV 339 >gi|313676093|ref|YP_004054089.1| protein translocase subunit secf;protein translocase subunit secd [Marivirga tractuosa DSM 4126] gi|312942791|gb|ADR21981.1| protein translocase subunit secF;protein translocase subunit secD [Marivirga tractuosa DSM 4126] Length = 997 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 225/817 (27%), Positives = 383/817 (46%), Gaps = 56/817 (6%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR--QIQNKITLSFADSRFKEN------------- 110 V+ + + LR+ + + G +++ + +I + E Sbjct: 180 VDDAIDRSFNILRTRIDRFGTSQPNIQKLENTGRIQIELPGVDNPERVRKLLQGVAKLEF 239 Query: 111 ----IADKVTLFLQGVNSKLNVD---------PKKNLLVTTTEKEISIVLSQNNIDQVIS 157 ++V+ L N L + + T+ E L Q+ + Sbjct: 240 LQVVAINEVSDALAAANEILVAEQKANQKNELGSDDSTETSEESGNLADLLQDEEADTTA 299 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 +++ + + + D +++ ++ + Sbjct: 300 TEGQEADSADANLDSLENAQNVSPLFSLTRSQYGLVYEVTDTAKINDIIQREDIQALFPR 359 Query: 218 LP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274 + K + L + + ++ ++G +N A FD +P VD+S Sbjct: 360 NTRLLWDVKPRKLDDGTELLELYVVRTQRGNQALLTGEVVNDARQTFDEVG-QPAVDMSM 418 Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334 D GAR++ ++TR+NI +A+VLD V +AP + Q IP+GK+ ISGNFT+E A LA + Sbjct: 419 DPTGARKWAKITRENINNRIAIVLDNYVYSAPNVTQEIPNGKSIISGNFTMEEAKDLANI 478 Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394 L+AGSLP IVEE +G LG ++ +G +IVAGL ++++FM+ Y K G +A+ ++ Sbjct: 479 LKAGSLPAPTRIVEEAIIGPTLGKEARAQGIISIVAGLAMVLIFMVGYYSKGGFIANIAL 538 Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454 N+ L +L+ L A LTLP IAGIVL IG+++D+N+L+ ERIREE R + ++ Sbjct: 539 VFNIFFILGILAQLNAALTLPGIAGIVLTIGMSIDANVLIFERIREEMRAGSPLLKAISS 598 Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 G+S+AYS+I D+N+T + +L++ G G V+GFAIT+ + I S F+A+ I R ++ ++ Sbjct: 599 GYSKAYSSIVDANVTTFLTGAILYWLGQGPVKGFAITLMIGIACSFFSAVFITRVIVSWM 658 Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574 + I L+ + I+ FM R S + + I L+ T GL G+D Sbjct: 659 SKKGDQSKISFATPFSKNLLNN-ISFNFMSKRKMAYIGSGIVIVIGIVLMVTKGLTLGVD 717 Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 F GG V V+ + ++ L+ + G N L + + Sbjct: 718 FTGGRSYVVRFAEQVETTSLKVALDGKLEDAGTEVKTYGANNILKVTTSYLVNEESTEAD 777 Query: 635 LEMVKKKITEI----------------VPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + K I I TI + VG I+ ++ VI + I Sbjct: 778 NTVKTKIIDGIAEATGMSYVETESAMGDNDFTISGSSKVGATIADDIRNSSQESVIFALI 837 Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL-----FGIEFNLTAVAAVLTLIGY 732 A+ IYI IRF+ W F LGA+ L D L FA+ F E + +AA+LT+IGY Sbjct: 838 AIFIYILIRFRRWQFGLGAVVALFHDTLFVLSAFAIAKLLGFSFEIDQVFIAAILTVIGY 897 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 S+ND VVV+DR+R+ + + + + + + +IN T+ R+V TS+ + +L + ++GG Sbjct: 898 SINDTVVVFDRIRETLGIKSK-ATNEETFNTAINNTISRTVMTSLTTLLVILILFIFGGE 956 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 V+ F+ + GI+V SSIFIA P++L + + K Sbjct: 957 VLRGFSFALLVGILVGTYSSIFIATPVVLDLAKRKKK 993 Score = 70.9 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 99/265 (37%), Gaps = 51/265 (19%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN------------------ 42 M+N ++V + ++ + + F+ + D + Sbjct: 1 MKNRGFIVFMTVIVTLLCIYYLSFTFVSNGIKDDATAYATDQAGNIDYSKRQNYLDSVYN 60 Query: 43 -------------------RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83 ++LGLDL+GG H+ LEV D + G DE + Sbjct: 61 IPVYNLLGVEFTYKEVQDMELNLGLDLQGGMHVTLEVSPVDIIKGLSGNNEDEAL--INA 118 Query: 84 EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143 + Q F + ++N K++ F ++ + TE Sbjct: 119 LETARERQKTSQGSFVDLFYQAFKEQNPDKKLSEFFA-------TSANRDRISFETEDSE 171 Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRL 202 + + + AI++S I+R RID+ G S+ IQ+ + RI I+LPG +P R+ Sbjct: 172 VLRII----RTEVDDAIDRSFNILRTRIDRFGTSQPNIQKLENTGRIQIELPGVDNPERV 227 Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFM 227 R+LL AK+ F +V+ N + Sbjct: 228 RKLLQGVAKLEFLQVVAINEVSDAL 252 >gi|284040010|ref|YP_003389940.1| protein-export membrane protein SecD [Spirosoma linguale DSM 74] gi|283819303|gb|ADB41141.1| protein-export membrane protein SecD [Spirosoma linguale DSM 74] Length = 1029 Score = 348 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 209/799 (26%), Positives = 373/799 (46%), Gaps = 44/799 (5%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQG 121 D VNG +++ + K G+ ++++ +I + E I +T + Sbjct: 174 DEVNGATTRAFQIIQARVDKFGVANPNIQRLPGSGRIQIELPGVDNPERIRRLLTGAAKL 233 Query: 122 VNSK------------------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163 ++ L+ + + + TT + + + S + S Sbjct: 234 EFTEVYRLNELAPAIEGMGAYLLSQEAARKAALKTTATTPATGSAAQGASSLESQLAQGS 293 Query: 164 MEIIRQRID-QIGISESTIQRLGS--HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 + + D ++ T +D +R +L Sbjct: 294 KKDSTAKNDTAAASAQGTALTQLFLPVGQDQLGVYLKDTARANDVLNAPEVKGLFPADAF 353 Query: 221 NSKKGFMFGVRFLRDSDGNQYL--VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG 278 + F ++ +L + + G + +N +P V ++ + G Sbjct: 354 FAWDRKTFKATDGKEILPLYFLKKAGGRAPLEGDVITE-ASNDYDDRGRPEVTMNMNPEG 412 Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG 338 AR++ +T N+G+P+A++LD V TAP + IP+G++ ISGNFT+E +A +L+AG Sbjct: 413 ARKWKNLTAANVGRPVAILLDNLVYTAPNVQNEIPNGRSSISGNFTVEETKDMANVLKAG 472 Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398 LP NIVEE VGA LGS+++ G + + G++L++ F++ Y + G +AD ++ +N+ Sbjct: 473 KLPAPTNIVEESVVGATLGSEAVSAGVLSSIIGILLVLAFVVFYYNRAGFIADIALIVNL 532 Query: 399 ILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR 458 + +++ LGA LT+P IAGIVL IG+AVD+N+L+ ERI+EE ++ S+ GF Sbjct: 533 FFLMGVMASLGAVLTMPGIAGIVLSIGMAVDANVLIFERIKEEMALGKTFKQSVTDGFQN 592 Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 A S+I DSN+T + +VLF FG G + GFA T+ + IL S+F AI I R ++ + IR Sbjct: 593 ALSSIIDSNVTTFLTGIVLFIFGTGLILGFATTLIIGILTSLFAAIFITRLLLEYYIRNG 652 Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 K S + F+ R +S + I G G+DFKGG Sbjct: 653 KTLSFSSTWAKN---LFADSNFDFVSRRKLYYTVSSIIIAAGIISAVFKGFGLGVDFKGG 709 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE----KNFLVRLQYQPGDSVA---Q 631 + + V VR++LE++ G + + G V Y D+ + Sbjct: 710 RSYVIRFEKAVSTEDVRNSLETVLGGSPEVKTYGGTGIGANQVKVTTPYLVDDNSQGADK 769 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690 + + + I++++ VGP I+ +L+ + ++++ + +YI IRFK Sbjct: 770 KAEATIYQGLSAIKGNPAKIESSQKVGPTIAYDLLTSALWSILLAVAVVFVYILIRFKKL 829 Query: 691 YFALGAITTLILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 F GA+ + D+ L F++F ++ + V A+LT++GYS+ND VVV+DR+ Sbjct: 830 AFGYGAVVAMFHDVLIILAIFSIFNGLLPFSLDVDQAFVGALLTIMGYSMNDTVVVFDRV 889 Query: 745 RKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 R+ + S +I+ ++N TL R+ T + + +L + ++GG I F+ M Sbjct: 890 REYLAENKGKKESIATIINNALNSTLSRTAVTGFSTILVLLVLFIFGGETIRGFSFAMLI 949 Query: 804 GIVVAASSSIFIAAPILLF 822 G+VV SS+F+A PI++ Sbjct: 950 GVVVGTYSSLFVATPIVVD 968 Score = 44.7 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 98/277 (35%), Gaps = 59/277 (21%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDR-------------------FPSAMPK 41 M+N ++IL +I I + F+ + + + ++ K Sbjct: 1 MQNRTGIIILTGVIAAICIYFLSFTFVSRGVKADAEAYATNKQGVVDREKKQHYLDSLWK 60 Query: 42 NRISLGLDLR--------------GGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87 I LG L+ GG H+VLEV D + D F + + Sbjct: 61 EPIYLGSTLQEVTERELGLGLDLQGGMHVVLEVSPADILRSLSGNNRDP--KFNEALKLA 118 Query: 88 VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147 V + KL D K + T+ I Sbjct: 119 VEDQKTSNTSFV-----------------DLFASEFKKLAPDTKLASVFATSANRSKINF 161 Query: 148 SQNNID------QVISHAIEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPS 200 ++ + ++ A ++ +II+ R+D+ G++ IQRL S RI I+LPG +P Sbjct: 162 QSSDTEVRKLLNDEVNGATTRAFQIIQARVDKFGVANPNIQRLPGSGRIQIELPGVDNPE 221 Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 R+R+LL AK+ F +V N + G+ S Sbjct: 222 RIRRLLTGAAKLEFTEVYRLNELAPAIEGMGAYLLSQ 258 >gi|126661999|ref|ZP_01732998.1| putative protein-export transmembrane SecDF protein [Flavobacteria bacterium BAL38] gi|126625378|gb|EAZ96067.1| putative protein-export transmembrane SecDF protein [Flavobacteria bacterium BAL38] Length = 973 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 195/810 (24%), Positives = 362/810 (44%), Gaps = 44/810 (5%) Query: 61 DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADK 114 + + +Q + LR + K G+ +++ + N +I + ++ + I Sbjct: 161 QVEPIIKQKVQESVESAFKVLRERIDKFGVTQPNIQLLGNSGRILVELPGAKDVDRIKKL 220 Query: 115 VTLFLQGVNSKLN--VDPKKNLLVTTTE---KEISIVLSQNNIDQVISHAIEQSMEIIRQ 169 + Q + + + L+ E++I + + S +++ Sbjct: 221 LQSTAQLEFWETYKIEEVGQYLMSVEDALKKTEVAIKEAPVKTTGIDSLLTDKADTTAAA 280 Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 +G + Q+ H + + A + + + Sbjct: 281 NSPFLGKMLAPGQQGSPHIGTFATKDTASINGYLKRADIKAMLPANLANIRFAWGKTNEK 340 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 + D + ++ +SG + AT FD + V + + G+R++ ++T Sbjct: 341 NPDITDLYALKGTRDNVAPLSGGVIVDATDTFDQLGNPA-VSMQMNGNGSRKWEQITGAV 399 Query: 290 IGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + A+ + V AI G+++ISGNF+IE LA +LRAG LP I Sbjct: 400 SQQGNAIAIVLDNIVYSAPGVSKGAITGGRSEISGNFSIEETKDLANILRAGKLPAAAEI 459 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 V+ VG LG ++I G + + G L++L+M+V YGK G A+ ++ +N++ L+ Sbjct: 460 VQSEVVGPSLGQEAIDNGFLSFIIGFSLVLLWMVVYYGKTGFYANLALLINILFIFGTLA 519 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS--LDMGFSRAYSTIF 464 GA LTLP IAGIVL IG+AVD+N+++ ER +EE +SV + + A S+I Sbjct: 520 SFGAVLTLPGIAGIVLTIGMAVDANVIIFERAKEELNNGKSVQEATDYAFTWKGAMSSII 579 Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 D+NIT I ++L FG G ++GFA T+ + I S+ TA+ + R + + + + + Sbjct: 580 DANITTAITAIILLVFGTGPIQGFATTLLIGIFTSVITAVFVTRMFLDWSLSRNEKLAYS 639 Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + + I F+ + +S + SI L T GLN G+DF GG V Sbjct: 640 TSLTKN---WFKNLNIDFLGKKKIAYAVSGILIALSIFSLATKGLNQGVDFVGGRTYQVR 696 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVK 639 ++ V V S+L ++ + + + + + + + D ++ E +K Sbjct: 697 FDKAVSAPEVTSDLVAVFGSAEAKIYGNDNQLKITTKYKIEEEGEGIDKEVNQKLYEGLK 756 Query: 640 KKITEI-----------VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 K + I ++ V IS+++ + V+ S + +Y+ I F Sbjct: 757 KHLPADLTYEKFANLYEGKQIGILSSAKVTGTISKDIKANSLWAVLGSLFVVFVYLMISF 816 Query: 689 K-WYFALGAITTLILDITKTLGFFALF------GIEFNLTAVAAVLTLIGYSVNDKVVVY 741 + W F GA+ + D+ LG F+ F +E + +AA+LT+IGYS+ND V+V+ Sbjct: 817 RKWQFGFGAVAAVAHDVIIVLGIFSFFYTILPFNMEIDQAFIAAILTVIGYSLNDTVIVF 876 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 DR+R+ + Y +S F+ L++K++N TL R++ TS + ++ + ++GG I F + Sbjct: 877 DRIREYL-DYNSSPDFKGLVNKALNTTLSRTINTSATTLVVLIAIFIFGGETIRGFVFAI 935 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 GI+V SS+FIA P++ + Sbjct: 936 LVGILVGTYSSLFIATPVMADAIGKKEGRK 965 Score = 65.9 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 94/194 (48%), Gaps = 15/194 (7%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 + N+I+ GLDL GG +++L++ D + G + +F+K + + Q+ I Sbjct: 67 VTNNQINKGLDLEGGLNVILQISVKDVLKGLANDSKNP--AFIKALADAKANQQGNQDYI 124 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 F A+ L L + N + + + T K++ ++ Q + Sbjct: 125 DAFF-------EAANTAGLKLAAADVFGNRNLDEVIKFDMTNKQVEPII-----KQKVQE 172 Query: 159 AIEQSMEIIRQRIDQIGISESTIQ-RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 ++E + +++R+RID+ G+++ IQ S RIL++LPG +D R+++LL +TA++ F + Sbjct: 173 SVESAFKVLRERIDKFGVTQPNIQLLGNSGRILVELPGAKDVDRIKKLLQSTAQLEFWET 232 Query: 218 LPNNSKKGFMFGVR 231 ++ V Sbjct: 233 YKIEEVGQYLMSVE 246 >gi|315224203|ref|ZP_07866043.1| protein-export membrane protein SecD [Capnocytophaga ochracea F0287] gi|314945936|gb|EFS97945.1| protein-export membrane protein SecD [Capnocytophaga ochracea F0287] Length = 995 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 189/810 (23%), Positives = 357/810 (44%), Gaps = 49/810 (6%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 V+ + + LR + K G+ +++++ N +I + ++ + + Q Sbjct: 187 VDESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQSLLQSTAQLEF 246 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + + +++ + + A QS + +S + Sbjct: 247 WETYKNTDVFPYLQALNEQLKSTAKTTDKVKDTLTAATQSGSSAIDSLLTDVKKDSVPTQ 306 Query: 184 L--------------GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 ++ +D +++ + + K + Sbjct: 307 QGKGNPLFDLIKANSYEGSPVLFTVSLKDTAQVNSYINSPEAKHLIPASLQYVKFAWGKP 366 Query: 230 VRFLR--DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 + + + ++ ++G + A +D + V + + Sbjct: 367 DKKTSLIELYALKGNRDNTPPLTGNVVTQAEQTYDVRNQPAVSMQMDGKGARIWEALTGK 426 Query: 288 DNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 ++ ++ + AI G+++I+G+FT+ A LA +LRAG LP + Sbjct: 427 AFTQNTNIAIVLDNIVYSAPGVTTGAISGGRSEITGHFTLNEAVDLANVLRAGKLPASAD 486 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 IV+ VG LG ++I G + + + I +MI YG+ G+ AD ++ N++L +L Sbjct: 487 IVQSEIVGPSLGQEAIDSGMNSFLIATIFIFAWMIFYYGRAGIYADLALVFNILLIFGVL 546 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 + + A LTLP IAGIVL IG+AVDSN+L+ ER +EE RK +++ ++ GF A S+I D Sbjct: 547 ASIEAVLTLPGIAGIVLTIGMAVDSNVLIFERSKEELRKGKNINQAVVDGFKHALSSILD 606 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 SNIT + ++L FFG G ++GFA T+ + I ++FTAI I R + + + K + Sbjct: 607 SNITTALTALILLFFGSGPIQGFATTLLIGIATTLFTAIFITRLFIDYSVEKKHTLTFTT 666 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + + F+ R G SI+ SI I L T GL+ GIDF GG + Sbjct: 667 PITKN---WFKNVDLNFIGKRKIGYAFSIILSIIGIISLSTRGLDQGIDFVGGRTYQIRF 723 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + V+ + V L++ + + + Q + + E++ K + + Sbjct: 724 EKEVNPTQVADALKTTLGNVEVKTFGAPNQVKIATKYKVQEESTEVDNEIQELLYKGLQK 783 Query: 645 IVP---------------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 +P I + VGP I+ ++ VI S I + +YI RF+ Sbjct: 784 FLPEGTSFDSFAKASSTDKIGIMQSMKVGPTIAEDIKSSAFWSVIGSLIVIGLYILFRFR 843 Query: 690 -WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 W F++GAI + + D+ LG ++L F +E + +AA+LT++GYS+ND V++YD Sbjct: 844 RWQFSMGAIVSSVHDVLMVLGIYSLTYSIMPFNMEIDQAFIAAILTVVGYSLNDTVIIYD 903 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ ++ S R+ I+ ++N TL R++ TS ++ + ++GG + F M Sbjct: 904 RIREVIREPHWS---REKINHALNATLSRTLNTSFTTLAVLITIFIFGGETLRGFMFAMI 960 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G+ + SS+F+AAP++ A + + Sbjct: 961 IGVFIGTYSSVFVAAPLIYDTVKDEADHTK 990 Score = 58.9 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 109/272 (40%), Gaps = 24/272 (8%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 ++ GLDL+GG +++L++ D + G D + + +L+ Sbjct: 86 KELNRGLDLKGGINVILQISVKDILRGLADNSKDPIFNK------------------SLA 127 Query: 102 FADSRFKENIADKVTLFLQG-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 AD + ++ + LF + + + T +I+ +S + + +I + Sbjct: 128 EADEQLRKTDKTYLDLFFEAYAKNGGKLASPDVFANKTLSDQINFQMSDSEVRPIIRKRV 187 Query: 161 EQSM----EIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 ++S+ E++R+RID+ G+S+ IQR S RIL++LPG +D +R++ LL +TA++ F Sbjct: 188 DESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQSLLQSTAQLEFW 247 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 + N ++ + S + + + K + Sbjct: 248 ETYKNTDVFPYLQALNEQLKSTAKTTDKVKDTLTAATQSGSSAIDSLLTDVKKDSVPTQQ 307 Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307 G F + ++ + TA V Sbjct: 308 GKGNPLFDLIKANSYEGSPVLFTVSLKDTAQV 339 >gi|329964250|ref|ZP_08301351.1| export membrane protein SecD [Bacteroides fluxus YIT 12057] gi|328525555|gb|EGF52598.1| export membrane protein SecD [Bacteroides fluxus YIT 12057] Length = 1001 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 214/825 (25%), Positives = 373/825 (45%), Gaps = 63/825 (7%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 170 EEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH--------AIEQSMEIIRQRID 172 + + + + + ++ +LS + A+ Q+ Sbjct: 230 LEFWETYNAKEVAPYLQSADAKLRAILSNETPADSTATDNAATETPAVAQATNTADSLAA 289 Query: 173 QIGISESTIQRL------------------GSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 + ++ +D + + + L + Sbjct: 290 ALKGENKAQTADLAQIKKEHPLLAMLQVNPNGQGPVVAYANYKDTAEINRYLSMPEVKAE 349 Query: 215 HKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 + F + K + G + + KP V Sbjct: 350 MPKDLSLKWGVSPFEYDPKAQTFELYAIKSTERNGKAPLEGDVVVD-AKDEYDHFGKPAV 408 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 +S + GARR+ ++T+ NI K +A+VLDG V +AP +NQ I G +QI+G+FT E A Sbjct: 409 SMSMNTDGARRWAQLTKQNINKSIAIVLDGYVYSAPNVNQEITGGNSQITGHFTPEQAKD 468 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLV 389 LA +L++G +P +IV+E VG LG SI G + V L+L++++M +YG G+V Sbjct: 469 LANVLKSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCSMYGFIPGMV 528 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ LN+ TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R + V Sbjct: 529 ANGALVLNLFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRAGKGVK 588 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + ILIS FTA+ + R Sbjct: 589 KALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTAVFMTRL 648 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + K+ ++ + L + FM + + + + + L T GL Sbjct: 649 FYEHFMSKDKLLNLTFSSKISKNL-MANVHFDFMGRNKVWMTATGIIIVVCLGFLMTRGL 707 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + IDF GG V V+ VR + S G VR+ Sbjct: 708 SQSIDFTGGRNFKVQFENQVEPEQVRELISSKFGDANVSVIAIGTDGKTVRISTNYRIEE 767 Query: 630 AQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRELIRKGI 670 + ++ + E +I +++ VGP I+ ++ I Sbjct: 768 EGNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADDIKVSAI 827 Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAV 723 V+++ IA+ IYI IRF+ +++G++ L D LG +++ F +E + T + Sbjct: 828 WSVVLALIAIGIYILIRFRNIAYSIGSVAALACDTIVILGAYSICWGWMPFSLEIDQTFI 887 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 A+LT IGYS+NDKVV++DR+R+ LY F L + S+N TL R++ TS++ I + Sbjct: 888 GAILTAIGYSINDKVVIFDRVREFFGLYPKRNKF-QLFNDSLNTTLARTINTSLSTLIVL 946 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L + + GG I SFA M G+V SS+F+A+PI + + Sbjct: 947 LCIFILGGDSIRSFAFAMILGVVCGTLSSLFVASPIAYMLMKNKK 991 Score = 128 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 85/184 (46%), Gaps = 7/184 (3%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I +IVGP + + I GI+ +++ I +++Y+ + + + A L+L++ TLG Sbjct: 483 HIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCSMYGFIPGMVANGALVLNLFFTLG 542 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + F ++ +A ++ +G +V+ V++Y+R ++ ++ + + + Sbjct: 543 ILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRA---GKGVKKALADGYSNAF 599 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +++ + I+ + + +G I FA + GI++ S F A + Y+ Sbjct: 600 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYEHFMS 655 Query: 830 NARI 833 ++ Sbjct: 656 KDKL 659 Score = 81.3 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 58/368 (15%), Positives = 119/368 (32%), Gaps = 44/368 (11%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ-------------SMLDR------------F 35 M+N ++ I ++ + + +F+ + +++ F Sbjct: 1 MQNKGFVRIFAILLTLVCVFYLSFSFVTRHYTHKAKEFAKGDEKVEQDYLDSLANEKVYF 60 Query: 36 PSAMPKN----RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + K ISLGLDL+GG +++LEV D + DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFNQ--ALANAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ + F K ++ L ++ S + Sbjct: 119 TTSQDDVITLFVKEYHKLAPGASLSELFAT-----------QQLKDKVNQKSSDAAVEKV 167 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + + + A++ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 168 LREEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 A + F + ++ + + D T + Sbjct: 228 ANLEFWETYNAKEVAPYLQSADAKLRAILSNETPADSTATDNAATETPAVAQATNTADSL 287 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 E A+ LA++ PV+ A A+I+ ++ Sbjct: 288 AAALKGENKAQTADLAQIKKEHPLLAMLQVNPNGQGPVVAYANYKDTAEINRYLSMPEVK 347 Query: 330 ILAAMLRA 337 + Sbjct: 348 AEMPKDLS 355 >gi|332880059|ref|ZP_08447743.1| export membrane protein SecD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682055|gb|EGJ54968.1| export membrane protein SecD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 995 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 197/802 (24%), Positives = 360/802 (44%), Gaps = 55/802 (6%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123 V+ + + LR + K G+ +++++ +I + ++ + + + Q Sbjct: 187 VDESIVSAFEVLRKRIDKFGVSQPNIQRLGASGRILIELPGAKDIDRVKALLQSTAQLEF 246 Query: 124 SK-------------LNVDPKKNLLVTTTEKEISIVL---SQNNIDQVISHAIEQSMEII 167 + LN K + TT + ++ + + + ID +++ + S+ Sbjct: 247 WETYKNGDVYPYLEALNEQLKTTKVAKTTSTKDTLAVNTQTGSTIDSLLTDVKKDSVPAK 306 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 ++ ++ +D ++ L + K + Sbjct: 307 GTINPLFDLASPVRY----ESPVLLTANLKDTMQVNSYLHSPEAKRLLPADLQYVKFVWG 362 Query: 228 FGVRFLR--DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 + + + ++ ++G + A +D + V + Sbjct: 363 KPDKKTSMIELYALKGNRDNTPALTGNVITQADQGYDMRNQPSVSMQMDGKGARIWEALT 422 Query: 286 TRDNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343 + + ++ ++ + AI G+++I+GNFT+ A LA +LRAG LP Sbjct: 423 GKAFTERGNIAIVLDNIVYSAPGVTTGAISGGRSEITGNFTLNEAIDLANVLRAGKLPAG 482 Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403 +IV+ VG LG ++I G + + + I +M+ YG+ G+ AD ++ +N++L Sbjct: 483 ADIVQSEVVGPSLGQEAIDSGMNSFLIATIFIFAWMVFYYGRAGIYADIALLVNILLIFG 542 Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463 +LS +GA LTLP IAGIVL IG+AVD+N+L+ ER +EE K +S ++ GF A S+I Sbjct: 543 VLSSIGAVLTLPGIAGIVLTIGMAVDANVLIFERSKEELAKGKSTDQAVVDGFKHALSSI 602 Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 DSNIT + ++L FFG G ++GFA T+ + IL ++FTAI I R ++ + + + + Sbjct: 603 LDSNITTGLTALILLFFGSGPIQGFATTLLIGILTTLFTAIFITRLLIDYSVEKRHPLTF 662 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + F+ R G ISI S+ I LFT GL+ GIDF GG V Sbjct: 663 VTSVTKN---WFKNVNLNFIGNRKVGYVISIALSVIGIISLFTRGLDQGIDFVGGRTYQV 719 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + V + V L+ + + + Q + V +++ K + Sbjct: 720 RFEKEVVPTQVAEALKKDLGNVEVKTFGAPNQVKISTKYKVQEESTEVDNEVQQLLYKGL 779 Query: 643 TEIVPLSTIQNTEIV---------------GPKISRELIRKGIVGVIISAIAMLIYIWIR 687 +P + GP I+ ++ VI S I + +YI R Sbjct: 780 QSFLPQGLSYESFAQASSTDKVGIMQSMKVGPTIAEDIKSSAFWSVIGSLIVIGLYILFR 839 Query: 688 FK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVV 740 F+ W F++GAI + D+ LG ++L F +E + +AA+LT++GYS+ND V++ Sbjct: 840 FRKWQFSMGAIVSSAHDVLLVLGIYSLTYSIMPFNMEIDQAFIAAILTVVGYSLNDTVII 899 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 YDR+R+ M+ S R+ I+ ++N TL R++ TS ++ + ++GG + F Sbjct: 900 YDRIREVMRQPHWS---REKINHALNTTLSRTLNTSFTTLAVLVTIFIFGGETLRGFMFA 956 Query: 801 MAFGIVVAASSSIFIAAPILLF 822 M G+ V SSIF+AAPI+ Sbjct: 957 MIIGVFVGTYSSIFVAAPIIYD 978 Score = 139 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 99/305 (32%), Gaps = 4/305 (1%) Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + R ++ + G Sbjct: 357 VKFVWGKPDKKTSMIELYALKGNRDNTPALTGNVITQADQGYDMRNQPSVSMQMDGKGAR 416 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + R N+ + + G+ + + Sbjct: 417 IWEALTGKAFTERGNIAIVLDNIVYSAPGVTTGAISGGRSEITGNFTLNEAIDLANVLRA 476 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 ++ + I +E+VGP + +E I G+ +I+ I + ++ + + A L++ Sbjct: 477 GKLPAGADIVQSEVVGPSLGQEAIDSGMNSFLIATIFIFAWMVFYYG-RAGIYADIALLV 535 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 +I G + G L +A ++ IG +V+ V++++R ++ + S + Sbjct: 536 NILLIFGVLSSIGAVLTLPGIAGIVLTIGMAVDANVLIFERSKEELA---KGKSTDQAVV 592 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 L + +++ ++ L + +G I FA + GI+ ++IFI ++ + Sbjct: 593 DGFKHALSSILDSNITTGLTALILLFFGSGPIQGFATTLLIGILTTLFTAIFITRLLIDY 652 Query: 823 IYDWR 827 + R Sbjct: 653 SVEKR 657 Score = 59.3 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 22/183 (12%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 + ++ GLDL+GG +++L++ D + G D + + + + L Sbjct: 85 EKELNRGLDLKGGINVILQISVKDILRGLANNSKDPIFNK-----------SLAEADVQL 133 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 D + + + + + T +I+ +S + + +I + Sbjct: 134 RKTDKTYLDLFFE------AYAKNGGKLASPDVFANKTLSDQINFQMSDSEVRPIIRRKV 187 Query: 161 EQSM----EIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 ++S+ E++R+RID+ G+S+ IQR S RILI+LPG +D R++ LL +TA++ F Sbjct: 188 DESIVSAFEVLRKRIDKFGVSQPNIQRLGASGRILIELPGAKDIDRVKALLQSTAQLEFW 247 Query: 216 KVL 218 + Sbjct: 248 ETY 250 >gi|317478345|ref|ZP_07937509.1| protein-export membrane protein SecD [Bacteroides sp. 4_1_36] gi|316905504|gb|EFV27294.1| protein-export membrane protein SecD [Bacteroides sp. 4_1_36] Length = 999 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 213/831 (25%), Positives = 371/831 (44%), Gaps = 65/831 (7%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIA 112 + + + ++ D LR+ + + G+ +++ +++ +I + + E + Sbjct: 162 AEVEKVLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVR 221 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA------IEQSMEI 166 + + + + ++ +++ + A + Q+ Sbjct: 222 KLLQGSANLEFWETYTAKDVTPYLQAADTKLRAIVASETPAEEADSAATEAPAVAQATST 281 Query: 167 IRQRIDQIGISESTIQRL------------------GSHRILIQLPGEQDPSRLRQLLGT 208 + T ++ +D + + + L Sbjct: 282 ADSLAAALKGENKTQTADLAQIKKEHPLFAILQVNPSGQGPVVAYANYKDTAEINRYLSM 341 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFDPK 264 + + + K + G + + Sbjct: 342 PEVQAEMPKDLRLKWGVSPYEYDPKAQTFELYAIRSTERNGKAPLEGDVVVS-AKDEYDH 400 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 KP V +S + GARR+ ++T+ NIGK +A+VLDG V +AP +N I G +QI+G+FT Sbjct: 401 YGKPAVSMSMNTDGARRWAQLTKQNIGKSIAIVLDGYVYSAPNVNNEITGGNSQITGHFT 460 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E A LA +LR+G +P +IV+E VG LG SI G + + L+L++++M +YG Sbjct: 461 PEQAKDLANVLRSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCSMYG 520 Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 G+VA+ ++ LN+ TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R Sbjct: 521 FIPGMVANGALVLNLFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELR 580 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + V +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + ILIS FTA Sbjct: 581 AGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTA 640 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + R + K+ ++ + L FM + + + I Sbjct: 641 VFMTRLFYDHFMSKDKLLNLTFSSKISKNL-MANAHFDFMGKNKLWLTTTGAIIVICIAF 699 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 L T GL+ IDF GG V V+ VR + S G VR+ Sbjct: 700 LATRGLSQSIDFTGGRNFKVQFENKVEPEQVRELISSKFGDANVSVIAIGTDGKTVRIST 759 Query: 624 QPGDSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRE 664 + ++ + E +I +++ VGP I+ + Sbjct: 760 NYRIEEEGNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADD 819 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717 + I V+++ IA+ IYI IRF+ +++G++ L D LG +++ F +E Sbjct: 820 IKVSAIWSVVLALIAIGIYILIRFRNIAYSIGSVAALACDTIIILGAYSICWGWMPFSLE 879 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + T + A+LT IGYS+NDKVV++DR+R+ LY F L + S+N TL R++ TS+ Sbjct: 880 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKRDRF-QLFNDSLNTTLARTINTSL 938 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + I +L + + GG I SFA M G+V SS+F+A+PI + + Sbjct: 939 STLIVLLCIFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYLLMKNKK 989 Score = 127 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 85/184 (46%), Gaps = 7/184 (3%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I +IVGP + + I GI+ I++ I +++Y+ + + + A L+L++ TLG Sbjct: 481 HIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCSMYGFIPGMVANGALVLNLFFTLG 540 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + F ++ +A ++ +G +V+ V++Y+R ++ ++ + + + Sbjct: 541 ILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRA---GKGVKKALADGYSNAF 597 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +++ + I+ + + +G I FA + GI++ S F A + YD Sbjct: 598 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYDHFMS 653 Query: 830 NARI 833 ++ Sbjct: 654 KDKL 657 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 96/260 (36%), Gaps = 46/260 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + + Sbjct: 1 MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYTSKAKEFAKGDVKVEQDYLDSLANEKVYF 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + +DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKVLADNKTDEAFNQ--ALATAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQN 150 Q+ + F V + + + L+ L ++ + + Sbjct: 119 TTSQDDVITLF------------VREYHKLAPGAPLSQLFATQQLKDKVTQKSTDAEVEK 166 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208 + + + A++ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL Sbjct: 167 VLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQG 226 Query: 209 TAKMSFHKVLPNNSKKGFMF 228 +A + F + ++ Sbjct: 227 SANLEFWETYTAKDVTPYLQ 246 >gi|270295349|ref|ZP_06201550.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274596|gb|EFA20457.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 999 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 213/831 (25%), Positives = 371/831 (44%), Gaps = 65/831 (7%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIA 112 + + + ++ D LR+ + + G+ +++ +++ +I + + E + Sbjct: 162 AEVEKVLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVR 221 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA------IEQSMEI 166 + + + + ++ +++ + A + Q+ Sbjct: 222 KLLQGSANLEFWETYTAKDVTPYLQAADTKLRAIVASETPAEEADSAATEAPAVAQATST 281 Query: 167 IRQRIDQIGISESTIQRL------------------GSHRILIQLPGEQDPSRLRQLLGT 208 + T ++ +D + + + L Sbjct: 282 ADSLAAALKGENKTQTADLAQIKKEHPLFAILQVNPSGQGPVVAYANYKDTAEINRYLSM 341 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFDPK 264 + + + K + G + + Sbjct: 342 PEVQAEMPKDLRLKWGVSPYEYDPKAQTFELYAIRSTERNGKAPLEGDVVVS-AKDEYDH 400 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 KP V +S + GARR+ ++T+ NIGK +A+VLDG V +AP +N I G +QI+G+FT Sbjct: 401 YGKPAVSMSMNTDGARRWAQLTKQNIGKSIAIVLDGYVYSAPNVNNEITGGNSQITGHFT 460 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E A LA +LR+G +P +IV+E VG LG SI G + + L+L++++M +YG Sbjct: 461 PEQAKDLANVLRSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCSMYG 520 Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 G+VA+ ++ LN+ TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R Sbjct: 521 FIPGMVANGALVLNLFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELR 580 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + V +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + ILIS FTA Sbjct: 581 AGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTA 640 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + R + K+ ++ + L FM + + + I Sbjct: 641 VFMTRLFYDHFMSKDKLLNLTFSSKISKNL-MANAHFDFMGKNKLWLTTTGAIIVICIAF 699 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 L T GL+ IDF GG V V+ VR + S G VR+ Sbjct: 700 LATRGLSQSIDFTGGRNFKVQFENKVEPEQVRELISSKFGDANVSVIAIGTDGKTVRIST 759 Query: 624 QPGDSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRE 664 + ++ + E +I +++ VGP I+ + Sbjct: 760 NYRIEEEGNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADD 819 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717 + I V+++ IA+ IYI IRF+ +++G++ L D LG +++ F +E Sbjct: 820 IKVSAIWSVVLALIAIGIYILIRFRNIAYSIGSVAALACDTIIILGAYSICWGWMPFSLE 879 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + T + A+LT IGYS+NDKVV++DR+R+ LY F L + S+N TL R++ TS+ Sbjct: 880 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKRDRF-QLFNDSLNTTLARTINTSL 938 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + I +L + + GG I SFA M G+V SS+F+A+PI + + Sbjct: 939 STLIVLLCIFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYLLMKNKK 989 Score = 127 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 85/184 (46%), Gaps = 7/184 (3%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I +IVGP + + I GI+ I++ I +++Y+ + + + A L+L++ TLG Sbjct: 481 HIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCSMYGFIPGMVANGALVLNLFFTLG 540 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + F ++ +A ++ +G +V+ V++Y+R ++ ++ + + + Sbjct: 541 ILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRA---GKGVKKALADGYSNAF 597 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +++ + I+ + + +G I FA + GI++ S F A + YD Sbjct: 598 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYDHFMS 653 Query: 830 NARI 833 ++ Sbjct: 654 KDKL 657 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 96/260 (36%), Gaps = 46/260 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + + Sbjct: 1 MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYTSKAKEFAKGDVKVEQDYLDSLANEKVYF 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + +DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKVLADNKTDEAFNQ--ALATAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQN 150 Q+ + F V + + + L+ L ++ + + Sbjct: 119 TTSQDDVITLF------------VREYHKLAPGAPLSQLFATQQLKDKVTQKSTNAEVEK 166 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208 + + + A++ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL Sbjct: 167 VLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQG 226 Query: 209 TAKMSFHKVLPNNSKKGFMF 228 +A + F + ++ Sbjct: 227 SANLEFWETYTAKDVTPYLQ 246 >gi|317486524|ref|ZP_07945347.1| protein-export membrane protein SecD [Bilophila wadsworthia 3_1_6] gi|316922199|gb|EFV43462.1| protein-export membrane protein SecD [Bilophila wadsworthia 3_1_6] Length = 891 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 254/882 (28%), Positives = 415/882 (47%), Gaps = 70/882 (7%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + + + +++ L + P +P+ + P A ISLGLDL+GG L L V Sbjct: 1 MKLS-FRYAIAAIVMAGALFLLSPTLMPEDV--NLPGASR---ISLGLDLKGGVQLTLGV 54 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + V L LR ++ GI V RQ+ + A++V FL Sbjct: 55 DTEKAVQSALINSGQVLRQKAREAGITVLGPRQMPGGVQ------ELIIARANQVDAFLA 108 Query: 121 GVNSKLNVDPKKNLLVTTTEKE-ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 + + + Q A++Q + I RIDQ G++E Sbjct: 109 LAKKDAPQVVPGTPRTGADGAVHLPYSFTPAFVKQTQDLAVDQVLRTISSRIDQFGVAEP 168 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR----- 234 I++ RILIQLPG + +R QL+ +A +SFH V + S+ GV F Sbjct: 169 DIRKQQGDRILIQLPGLTNVNRAVQLVEKSADLSFHLVRDDISQGYLPPGVAFYPMTGKH 228 Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 ++ + ++ +SG + A FD K +V +SF GA F T +++GK Sbjct: 229 GEATNAKLALDSTPLLSGKEVADARPGFDNKNTS-MVSLSFTPRGAALFEMATGEHVGKR 287 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+VLDG + +APVI + I G A ISG FT E A LA LR+GSL ++++E+R VG Sbjct: 288 LAIVLDGTIHSAPVIQEKIAGGTASISGQFTPEEAQDLAISLRSGSLAAPVHVLEQRTVG 347 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 LG SI G A + G + +++ M + YG G++A+ + + L + ++ LGATLT Sbjct: 348 PALGEASITSGILAALIGTLAVMIIMPLRYGWSGMLANGMLLCTLSLLMGGMAALGATLT 407 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAG+VL IG+AVD+N+L+ ERIREE + ++ GF RA +I DSN+T +I Sbjct: 408 LPGIAGVVLTIGMAVDANVLIFERIREELALGLTPPKAIKAGFERANLSIVDSNLTTIIV 467 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 +L+ FG G VRGFA+T+ L I+ SMF+AI + R +++ + ++ Sbjct: 468 AAILYQFGTGPVRGFAVTLTLGIIASMFSAIFLCRIAFDAWMKHTNGTRLSMHGPMELRA 527 Query: 534 IPDCIAIQFM--RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 + ++ R + GV +L + + GL YG+DF GG+ V PV Sbjct: 528 LSGYLSHFPFLKRVKHVGVLTLLLVMVAVSVGTWRGGLQYGVDFSGGVAAQVRFEHPVSD 587 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + L+ + + + Q + + + P Q + + + ++ Sbjct: 588 KQLIGALDPMHLEGLMTQQYGDNNSVWLLRFGLPDMPAQQLGEALLSHLQTVDDGGAVSL 647 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-------------------------- 685 E VGPK+ +L + + + + + +YI Sbjct: 648 DRLETVGPKVGDDLRSSALEAIYYALLLITVYISGRFEQRWGTAALLAGALTATMIALQW 707 Query: 686 --------------------IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 RF+ FA GA+ +LI D+T T + G E +L VAA Sbjct: 708 MGVPTEGRILAALLLTLFLCWRFRLSFAAGAMASLIFDVTTTTSLLVILGQEIDLNIVAA 767 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISV 783 +LT+IGYS+ND +V+YDR+R+ ++ ++I +++ +T+ R++ T+ ++ Sbjct: 768 LLTIIGYSLNDTIVIYDRIRETLRRENPDSPRPLPEIIQEALGDTMSRTLLTAGTTLVAA 827 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 L + + GG VI FA+ M G+ + SS+F+AAP+L D Sbjct: 828 LALFLLGGPVIYGFALTMLIGVFMGTISSLFVAAPMLPLFGD 869 >gi|160891551|ref|ZP_02072554.1| hypothetical protein BACUNI_04003 [Bacteroides uniformis ATCC 8492] gi|156858958|gb|EDO52389.1| hypothetical protein BACUNI_04003 [Bacteroides uniformis ATCC 8492] Length = 999 Score = 346 bits (887), Expect = 8e-93, Method: Composition-based stats. Identities = 213/831 (25%), Positives = 372/831 (44%), Gaps = 65/831 (7%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIA 112 + + + ++ D LR+ + + G+ +++ +++ +I + + E + Sbjct: 162 AEVEKVLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVR 221 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA------IEQSMEI 166 + + + + ++ +++ + A + Q+ Sbjct: 222 KLLQGSANLEFWETYTAKDVTPYLQAADTKLRAIVASETPAEEADSAATEAPAVAQATST 281 Query: 167 IRQRIDQIGISESTIQRL------------------GSHRILIQLPGEQDPSRLRQLLGT 208 + T ++ +D + + + L Sbjct: 282 ADSLAAALKGENKTQTADLAQIKKEHPLFAILQVNPSGQGPVVAYANYKDTAEINRYLSM 341 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFDPK 264 + + + K + G + + Sbjct: 342 PEVQAEMPKDLRLKWGVSPYEYDPKAQTFELYAIRSTERSGKAPLEGDVVVS-AKDEYDH 400 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 KP V +S + GARR+ ++T+ NIGK +A+VLDG V +AP +N I G +QI+G+FT Sbjct: 401 YGKPAVSMSMNTDGARRWAQLTKQNIGKSIAIVLDGYVYSAPNVNNEITGGNSQITGHFT 460 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E A LA +LR+G +P +IV+E VG LG SI G + + L+L++++M +YG Sbjct: 461 PEQAKDLANVLRSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCTMYG 520 Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 G+VA+ ++ LN+ TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R Sbjct: 521 FIPGMVANGALVLNMFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELR 580 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + V +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + ILIS FTA Sbjct: 581 AGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTA 640 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + R + K+ ++ + L + FM + + + I Sbjct: 641 VFMTRLFYDHFMSKDKLLNLTFSSKISKNL-MANVHFDFMGRNKLWLTTTGAIIVICIAF 699 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 L T GL+ IDF GG V V+ VR + S G VR+ Sbjct: 700 LATRGLSQSIDFTGGRNFKVQFENKVEPEQVRELISSKFGDANVSVIAIGTDGKTVRIST 759 Query: 624 QPGDSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRE 664 + ++ + E +I +++ VGP I+ + Sbjct: 760 NYRIEEEGNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADD 819 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717 + I V+++ IA+ IYI IRF+ +++G++ L D LG +++ F +E Sbjct: 820 IKVSAIWSVVLALIAIGIYILIRFRNIAYSIGSVAALACDTIIILGAYSICWGWMPFSLE 879 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + T + A+LT IGYS+NDKVV++DR+R+ LY F L + S+N TL R++ TS+ Sbjct: 880 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKRDRF-QLFNDSLNTTLARTINTSL 938 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + I +L + + GG I SFA M G+V SS+F+A+PI + + Sbjct: 939 STLIVLLCIFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYLLMKNKK 989 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 85/184 (46%), Gaps = 7/184 (3%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I +IVGP + + I GI+ I++ I +++Y+ + + + A L+L++ TLG Sbjct: 481 HIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCTMYGFIPGMVANGALVLNMFFTLG 540 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + F ++ +A ++ +G +V+ V++Y+R ++ ++ + + + Sbjct: 541 ILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRA---GKGVKKALADGYSNAF 597 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +++ + I+ + + +G I FA + GI++ S F A + YD Sbjct: 598 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYDHFMS 653 Query: 830 NARI 833 ++ Sbjct: 654 KDKL 657 Score = 74.7 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 96/260 (36%), Gaps = 46/260 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + + Sbjct: 1 MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYTSKAKEFAKGDVKVEQDYLDSLANEKVYF 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + +DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKVLADNKTDEAFNQ--ALATAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQN 150 Q+ + F V + + + L+ L ++ + + Sbjct: 119 TTSQDDVITLF------------VREYHKLAPGAPLSQLFATQQLKDKVTQKSTDAEVEK 166 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208 + + + A++ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL Sbjct: 167 VLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQG 226 Query: 209 TAKMSFHKVLPNNSKKGFMF 228 +A + F + ++ Sbjct: 227 SANLEFWETYTAKDVTPYLQ 246 >gi|223939077|ref|ZP_03630961.1| protein-export membrane protein SecD [bacterium Ellin514] gi|223892237|gb|EEF58714.1| protein-export membrane protein SecD [bacterium Ellin514] Length = 845 Score = 346 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 224/713 (31%), Positives = 385/713 (53%), Gaps = 29/713 (4%) Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195 T + + +D + + Q++E++R+R+D+ G+SE IQ G RILIQLPG Sbjct: 129 SKTLSGTNAAATNNAALDTQKAGMLSQAVEVLRKRVDKFGVSEPVIQPEGEDRILIQLPG 188 Query: 196 EQDPSR--LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------------DGNQY 241 + + R+ L A + F V ++ + + Y Sbjct: 189 LSESDKEDARRQLSKPAYLEFRLVHEHSDEFIRQGLTEPGYEVLTERDEDANGKVQTRSY 248 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 LV+ K E++G ++ +P +D + GA F VTR+N+G+ LAVVLDG Sbjct: 249 LVKKKPELTGKYI-SGAMVGRNNVGQPEIDFTLTSDGADIFATVTRENVGRQLAVVLDGE 307 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + TAPVI+ IP G QI+G +T + A +A +L L + ++I+ E +V LG D++ Sbjct: 308 LQTAPVIHGEIPGGHGQITGTYTDKRAQEIANVL-ENPLQVPVHILSESSVDPTLGKDTV 366 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 G A + G + + FM++ Y G +AD ++ N+I+ + +++ +G TLTLP IAGIV Sbjct: 367 KSGVKAAIIGTIAVAGFMVIYYMFAGAIADVALISNIIILIGVMASIGTTLTLPGIAGIV 426 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IG+AVD+N+L+ ERIREE+ K +S+ +L G+ RA+ TIFDS++T LI++++L F G Sbjct: 427 LTIGMAVDANVLIFERIREESAKGKSLRGALSAGYDRAFGTIFDSHVTTLISSIILIFMG 486 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541 G ++GF +T+ + + S+FTA+ + R + F+I + +KS+ + I I Sbjct: 487 SGPIKGFGVTLTIGVAASLFTALVVTRIIFDFLISREIVKSLPMLH------IIRVTKID 540 Query: 542 FMRARFWGVGISILFSICSICLL----FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 FM+ + L + + +G+DF GG L V ++ VD +R Sbjct: 541 FMKVATPAFICTWLLIVVGLGFGVYRGTVKHDLFGVDFAGGDNLMVGFSQKVDADKIREA 600 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 + + + + + V ++L++++K + E V Sbjct: 601 VARDAGEKEAIIQYQKDISSSVETLSIKSPYGTSDKILQVLQKDFPAA--QFVSKGAEKV 658 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP I +E+ + IV ++S + +L+Y+ R+++ FA+GA+ +I D+ T+G + LFG + Sbjct: 659 GPIIGKEIQQTAIVASLLSLLGILVYVAFRYEFSFAVGAVAAVIHDVLMTIGIYCLFGRQ 718 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FN T VAAVLT+IG+S+ND +V++DR+R+++KL SF+DLI++++N+TL R++ TS Sbjct: 719 FNATMVAAVLTIIGFSINDTIVIFDRIREDLKLGVRG-SFKDLINQALNQTLSRTIITSG 777 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F++ L + ++GG I FA GI+ SSI+IA+ ++L + Sbjct: 778 TVFLATLSLYLFGGGAINDFAFTFLVGIITGTYSSIYIASYLVLKWHKGARPQ 830 Score = 55.9 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 20/134 (14%) Query: 43 RISLGLDLRGGSHLVLEVDEDDFV-----------------NGFLQMYSDELRSFLKKEG 85 +I LGLDL+GG+ ++ VD + G L + LR + K G Sbjct: 109 KIRLGLDLQGGTSFLVGVDYSKTLSGTNAAATNNAALDTQKAGMLSQAVEVLRKRVDKFG 168 Query: 86 IGVFSMR-QIQNKITLSFAD--SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142 + ++ + +++I + KE+ +++ ++ + + TE Sbjct: 169 VSEPVIQPEGEDRILIQLPGLSESDKEDARRQLSKPAYLEFRLVHEHSDEFIRQGLTEPG 228 Query: 143 ISIVLSQNNIDQVI 156 ++ ++ Sbjct: 229 YEVLTERDEDANGK 242 >gi|318075772|ref|ZP_07983104.1| preprotein translocase subunit SecF [Streptomyces sp. SA3_actF] Length = 1156 Score = 346 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 185/873 (21%), Positives = 350/873 (40%), Gaps = 91/873 (10%) Query: 45 SLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-I 98 LG+DL GG+ + L+ + + D + + G+ ++ N I Sbjct: 16 RLGIDLAGGTSITLKAQNEPGQKNAVNKTNMDTAVDIINRRVNGLGVSEAEVQTQGNDHI 75 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL--------------------VTT 138 ++ ++ ++V Q + + Sbjct: 76 VVNIPRGTNEKQAREQVGTTAQLYFRPVLQVAAGTPAADPSASPSPSASSSPSGKTSPSP 135 Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198 + + + + A + + Q +++T Sbjct: 136 KSSAGAGGSTASPGAGSSASAGAGDASPQGRAVPQALKADATPSANAKSDKDADAKASPS 195 Query: 199 PSRLRQLLGTTAKMSFHK--------VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 P T + V K V + + E+ Sbjct: 196 PDASAAPDDKTTALFGSLDCSNKAQRVKATTGVKPTASMVACGNEGGQWAKYLLGPAEVE 255 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310 G +++ A A D + ++ +V + F+ G ++F +T + + VL V++ Sbjct: 256 GKNVSKADAVLDTQRNQWIVQMKFNGEGKKKFSSITGKLAQQQSPMNQFAIVLDGDVVSA 315 Query: 311 AIPSGK----AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 S + A+ISG+F+ E+A LA +L G+LP+ + V A LG + ++ G Sbjct: 316 PSVSERLGGSAEISGSFSQESAKDLANVLSYGALPLTFHEETVTTVTAALGGEQLHAGLI 375 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVL 422 A GL L++++++ Y L+A S+ ++ ILT +++LLG L LP++ G ++ Sbjct: 376 AGAVGLALVIIYLVAYYRGLALIAIASLVVSGILTYTIMTLLGPGIGFALNLPAVCGAIV 435 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 IG+ DS I+ ER+R+E R+ +++ +++ G+ RA TI S+ + +A VLF Sbjct: 436 AIGITADSFIVFFERVRDEVREGRTLRPAVERGWPRARRTILVSDFVSFLAAAVLFVVTV 495 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM---------------------- 520 G V+GFA T+GL+ L+ + T + ++ + R K Sbjct: 496 GKVQGFAFTLGLTTLLDVVTVFLFTKPLLTLLARRKFFSQGHPWSGFDPKRLGAKPPLRR 555 Query: 521 -------------KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 + + L+ I F+ R GISIL +I +I L Sbjct: 556 TRTPASTPITPRRRDMSRLGTLGARLVRGEIGYDFIGKRKIWYGISILITITAIVGLSVR 615 Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 GL+ GI+F+GG + +S ++ I + +G + Sbjct: 616 GLHMGIEFEGGAVFTTPKTSVSAAAAEQSAEDASGHDAIVQELGNGGMRVQISGIDTGKS 675 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + ++ + + K +I +VGP ++ K G+ I + ++IY+ I Sbjct: 676 DEIRDKLAQDLDVKAEDINAD-------LVGPSWGEQVANKAWTGLGIFMVLVVIYLAIA 728 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 F+W A+ A+ LI DIT T+G +AL G E V +LT++GYS+ D VVV+D +++ Sbjct: 729 FEWRMAVAALVALIHDITITVGVYALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQ 788 Query: 748 MKLYTT--SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIP 800 K T ++ ++ + SIN TL RS+ T++ A + V + GG ++ ++ Sbjct: 789 SKGITKQTRHTYAEVANLSINGTLVRSINTTVVALLPVAGLLFIGGGFLGAGMLNDISLS 848 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + G+ A SSIFIA P++ + + + Sbjct: 849 LFVGLAAGAYSSIFIATPLVSDLKSREPQMKAL 881 >gi|315607052|ref|ZP_07882056.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella buccae ATCC 33574] gi|315251106|gb|EFU31091.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella buccae ATCC 33574] Length = 1003 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 213/829 (25%), Positives = 378/829 (45%), Gaps = 65/829 (7%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122 V + + +R+ + K G+ ++++ + +I + + E + + Sbjct: 167 VKAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIKEPERMRKLLQGSANLE 226 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI-------G 175 + + + ++ ++ A+++ + +Q + Sbjct: 227 FWETYNAEEVAPYLQQLDQRVANGSHAEADTATADSAVQKQVAAAKQAEPKFKIDKKETD 286 Query: 176 ISESTIQRLGSHRILIQ-------------------LPGEQDPSRLRQLLGTTAKMSFHK 216 +E+ Q +D + + +++ + Sbjct: 287 KAEAAGMAAQQAEATKQHPLLARLQLTGGQSLSLVGYANVRDTAAINKIIYSAVAKQVLP 346 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDI 272 +++ L + + G + A FD PVV + Sbjct: 347 QDLRLMWGAKPADGLKVKNVYELYALKVTTSNGRAPLEGDVITNAKDEFDQFN-NPVVSM 405 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 S + GAR++ +T+ NIGK +A+VLDG V +AP +N I G +QISGNFTIE LA Sbjct: 406 SMNTEGARQWANMTKANIGKAIAIVLDGVVYSAPRVNGEIDGGNSQISGNFTIEDTKDLA 465 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVAD 391 L++G +P IV+E VG LG+ SI +G + V VL++ +M+ +Y G++A+ Sbjct: 466 NTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIISFVIAFVLLIFYMVAMYNFIPGMIAN 525 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ +NV TL +L+ A LT+ IAG+VL +G AVD+N+L+ ERI+EE R + + + Sbjct: 526 SALVVNVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRSGKGMKQA 585 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 +D G+S A+S I DSN+T+L+ ++L+ FG G ++GFA T + I+ S F+A+ + R + Sbjct: 586 IDAGYSNAFSAILDSNVTSLLTGIILYIFGTGPIQGFATTWMIGIVCSFFSAVYLTRLVY 645 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571 F +++ K ++ L +FM ++ + + F GL Sbjct: 646 EFKLKHDKWLNLKFWTGISKNL-MQGTNYKFMSMYKNTFTLACVAVAVFVISFFVRGLAQ 704 Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 IDF GG V +P VR L + + G N +R+ Sbjct: 705 SIDFTGGRNYVVAFEKPTQPEQVRDILTTAFPQATNSAISLGTDNKTIRISTNYKIESNS 764 Query: 632 TRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKGIV 671 V + + + +I +I ++ VGP +++++ R + Sbjct: 765 PTVDDEAETMLYTALKKAGLVSQKSVEDFKNPDIRQGGSIISSSKVGPSVAKDVTRGAFI 824 Query: 672 GVIISAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGFFALFG------IEFNLTAVA 724 V I+ +A+ +YI IRF+ F++GA L+LD +G F+L +E + T + Sbjct: 825 SVAIALLAIFVYILIRFRSKAFSIGATVALMLDALTVIGLFSLLQGLLPFSLEIDQTFIG 884 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETLGRSVYTSMAAFIS 782 AVLT+IGYS+NDKVVV+DR+R+N+KL+ + L + SIN+TL R++ TS++ I Sbjct: 885 AVLTVIGYSINDKVVVFDRIRENLKLHPKRAKEDIQGLFNDSINQTLARTINTSVSTLIV 944 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +L + GG I FA M G++ SSIFIA+PI + + +N Sbjct: 945 LLCILFLGGKSIQPFAFAMTLGVIFGTLSSIFIASPIAYLVMGKKIENR 993 Score = 74.7 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 91/253 (35%), Gaps = 37/253 (14%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41 M+N ++++ ++ + + + Sbjct: 1 MQNKGLVIVVAVLLTLASIFYLSFSAATSYYDSQAAKIKDPIAQQDYKDSVKYLGVYPYK 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG +++LE+ D V +D + E + Sbjct: 61 KCLETQIGLGLDLKGGMNVILEISVPDVVETLADHKTDVAFTKSMAEARAEEEKTANSDF 120 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 ITL F ++ K K+ L + S + + + Sbjct: 121 ITL-FVNAYHKNAPGHKLAEVFAT-----------QQLQGKVSPQSSDSEVEKALRAEVK 168 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++R RID+ G+ + IQ+ RI++++PG ++P R+R+LL +A + F Sbjct: 169 AAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIKEPERMRKLLQGSANLEFW 228 Query: 216 KVLPNNSKKGFMF 228 + ++ Sbjct: 229 ETYNAEEVAPYLQ 241 >gi|255011455|ref|ZP_05283581.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides fragilis 3_1_12] gi|313149273|ref|ZP_07811466.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138040|gb|EFR55400.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 1007 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 210/831 (25%), Positives = 381/831 (45%), Gaps = 69/831 (8%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 170 EEVKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE------------------- 161 + + + + ++ VL+ A++ Sbjct: 230 LEFWETYNAKEVAPYLQAADSKLRAVLAHETTANDTVAAVDSTALAATEATPDKAISAAD 289 Query: 162 -------------QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 Q+ +++ + + + + ++ +D + + L Sbjct: 290 SLAAALKGGEKKQQASSADLEQLKKEHPLLAILSVNPNGGPVVGYANYKDTATVNSYLAM 349 Query: 209 ---TAKMSFHKVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 A++ L + + K + G + A ++D Sbjct: 350 KEIAAELPKDLRLKWGVSPFEYDPKGQTFELYAIKSTERNGKAPLEGDVVTDAKDDYDQY 409 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 P V +S + GARR+ +T+ NI K +A+VLD V +AP ++ I G +QI+G+FT Sbjct: 410 GK-PSVSMSMNSDGARRWALLTKQNINKSIAIVLDNYVYSAPNVSNEITGGNSQITGHFT 468 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M +YG Sbjct: 469 PEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYG 528 Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 G++A+ ++ LN TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R Sbjct: 529 FIPGMIANGALVLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELR 588 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + V +L G+S A+S IFDSN+T++I ++LF+FG G +RGFA T+ + IL S FTA Sbjct: 589 SGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTA 648 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + R + + K+ ++ ++ FM + I+ + + I Sbjct: 649 VFMTRLVYEHFMNKDKLLNLTFTSPISKKML-VNTHFDFMGGNKKWLTITGVILLICIGS 707 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 L T GL+ IDF GG V P++ VR + + G VR+ Sbjct: 708 LVTRGLSQSIDFTGGRNFKVQFENPIEPEQVRELISNKFGDANVSVISIGTDKKTVRIST 767 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRE 664 V ++ + E + Q +++ VGP I+ + Sbjct: 768 NYRIQDEGNNVDSEIESYLYEALKPMLTQNITLATFIDRDNHTGGSIISSQKVGPSIADD 827 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717 + I V+ + IA+ +YI +RF+ +++G++ L D +G ++L F +E Sbjct: 828 IKTAAIWSVVFALIAIGLYILLRFRNIAYSVGSVAALTSDTLMIMGAYSLCWGWMPFSLE 887 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + T + A+LT IGYS+NDKVV++DR+R+ LY + + L D S+N TL R++ TS+ Sbjct: 888 IDQTFIGAILTAIGYSINDKVVIFDRVREFFSLYPKR-NVKQLFDDSLNTTLARTINTSL 946 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + I +L + + GG I SFA M G+V+ SS+F+A+PI + + Sbjct: 947 STLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFVASPIAYMMLKNKK 997 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 44/259 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWL 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + K Sbjct: 61 GNYTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--KALAEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ + F K K++ K + +++ E+ VL + Sbjct: 119 TTSQDDVITLFIKEYHKTAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLREE- 171 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + A+ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 172 ----VKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMF 228 A + F + ++ Sbjct: 228 ANLEFWETYNAKEVAPYLQ 246 >gi|256425208|ref|YP_003125861.1| bifunctional preprotein translocase subunit SecD/SecF [Chitinophaga pinensis DSM 2588] gi|256040116|gb|ACU63660.1| protein-export membrane protein SecD [Chitinophaga pinensis DSM 2588] Length = 1055 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 198/828 (23%), Positives = 355/828 (42%), Gaps = 79/828 (9%) Query: 76 ELRSFLKKEGIGVFSMRQIQNK--ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 L+ + K G+ ++ +NK I++ A E + + ++ + ++ Sbjct: 213 VLQKRIDKFGVASPNISLDENKGIISVELAGVDNPERVRKYLQASANLEFREVYKNDEQF 272 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQ------------------------------- 162 + +I + + + + ++ Sbjct: 273 IAGVIQPMNEAIKAAVGVAPKAATDSTKKDTAAVAKAGADTSTTGSLAAILDGKDSAKAG 332 Query: 163 ---SMEIIRQRIDQIGISES-----------TIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 S++ +R ++ +E + LP + R + + Sbjct: 333 KADSLKSDAERRAELAKAEPFFSIFFPRYDPRQGVAFGPIVGHILPSDTATFRRYTEIPS 392 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 + ++ + L + +SG + A ++D Sbjct: 393 VRNVLPKDLVFVYGAEDKENKRAPLPVYAIRVNPINPTPRVSGERVIDAKQDYDQSGRPE 452 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAV--------VLDGRVLTAPVINQAIPSGKAQIS 320 + P V VLD V +AP I I G++ IS Sbjct: 453 ISMTMDQVGAKEWKKLTGELAPTDPSNVASLNYVAVVLDNIVYSAPSIQGEIAGGRSSIS 512 Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380 G+FT+E A LA +L++G +P IV+E+ VG LG++SI G + + V+I + M+ Sbjct: 513 GSFTLEEANDLANILKSGKMPAPAKIVQEQIVGPTLGAESIAAGAKSFLISFVVIFVLML 572 Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440 V Y G VA+ ++ LN++ T +L+ LGATLT+P IAG+VL IG+AVD+N+++ ERI++ Sbjct: 573 VYYNTAGWVANIALILNLLFTFGILASLGATLTMPGIAGLVLTIGMAVDTNVIIFERIKD 632 Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500 E + ++ +++ G+ R+Y+ + D +IT+L+ ++LF+FG G V GFA T L +L+S+ Sbjct: 633 ELSRGKTYQQAVEDGYKRSYAPVLDGHITSLLTAIILFYFGLGPVLGFATTQILGLLLSL 692 Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560 F I I R + + K I A F+ R + +S + Sbjct: 693 FCGIMISRIVTDWWTNK---KRHFEYFTPVSRKIFKHAAFDFVGKRKYAYIVSFVMIAL- 748 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 F HG +G+DF GG + +P+ VR LE + + + Sbjct: 749 GASSFFHGFRHGVDFDGGRNYTIRFEQPMKADDVRDALEHEFGTEPYVKTIGNSNQLSIT 808 Query: 621 LQYQPGDSVAQTRVLEMVKK------------KITEIVPLSTIQNTEIVGPKISRELIRK 668 Y+ + K + I ++ V P IS +L Sbjct: 809 TNYKIEEQSEAVDKEVTQKMFDGLKKFYEPGLTLEAFSSPRFIVASQTVSPTISDDLRAG 868 Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721 I ++S I + +YI +RF W +++G I +L+ D+ TL F+ F +E + Sbjct: 869 AIKATVLSLIVIFLYILLRFSKWQYSIGTIFSLLHDVMVTLAVFSYCRDIVPFALEVDQH 928 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAF 780 +AA+LT+IG+S+ND V+V+DR+R+ + T S +I+K+IN+TL R+V TS+ F Sbjct: 929 FIAAILTVIGFSMNDTVIVFDRIREYFRTGTMKGASRDQIINKAINDTLSRTVMTSLTVF 988 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++L + ++GG V FA M G++ SSIF+AAP+L+ Sbjct: 989 LTILILFIFGGEVTRGFAFAMLIGVITGTYSSIFVAAPVLVDFDKNNQ 1036 Score = 60.1 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 15/212 (7%) Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96 + ++LGLDL+GG ++VL+V +D + D + + + Q Sbjct: 98 DKAKEKELNLGLDLQGGMNVVLDVSVEDVIRALSGQSRDAAFNKALELAVQRKKTSQSD- 156 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 ++ ++V + N K T+ K + ++ + Sbjct: 157 --FVTLFG-----QAYEEVQPQGRLSTIFANAYQKDIDFNTSNSKVLDVIRREAG----- 204 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQ-RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ + ++++RID+ G++ I I ++L G +P R+R+ L +A + F Sbjct: 205 -AAIKNTYLVLQKRIDKFGVASPNISLDENKGIISVELAGVDNPERVRKYLQASANLEFR 263 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247 +V N+ + + Sbjct: 264 EVYKNDEQFIAGVIQPMNEAIKAAVGVAPKAA 295 >gi|110636539|ref|YP_676746.1| bifunctional preprotein translocase subunit SecD/SecF [Cytophaga hutchinsonii ATCC 33406] gi|110279220|gb|ABG57406.1| protein translocase subunit secD / protein translocase subunit secF [Cytophaga hutchinsonii ATCC 33406] Length = 991 Score = 345 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 198/813 (24%), Positives = 376/813 (46%), Gaps = 43/813 (5%) Query: 61 DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADK 114 D + +N + + + LR+ + K G ++++ +I + + + + Sbjct: 172 DVEKVINEEIDLSVERSFNILRNRIDKFGAIQPNIQRIRGTGRILVELPGVENPQRVRNL 231 Query: 115 VT-----------------LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI----D 153 + +N L ++ + ++ +++ + N+ + Sbjct: 232 LQGTAKLEFMEVYQIYEIAEKTNRINDYLINLAEEKKTSSASDTSVAVTTTDNSSLLVTN 291 Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 A + D +S+ ++ + +++ L + + Sbjct: 292 SADKDAATVKADTSAAAKDTSKVSDFYRLIQAQGGLIYKTTDTSIINKILALDRVKSIIG 351 Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273 + K + G + + + K ++G + V + Sbjct: 352 NDLRFVWDRKANVVDGDVGYIELVPVKVGRDGKAALAGDVITNVGYGLSSDGKGYEVSMQ 411 Query: 274 FDEMGARRFFEVTRDNIGKPLAVV----LDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 GA+ + ++T+ + LD V +AP + IP+G + ISGNFT++ + Sbjct: 412 MSPAGAKSWRKITKAASQEQNKRRIAIVLDNSVYSAPTVQVEIPNGSSSISGNFTLDESK 471 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 LA +L+AG LP + IVEE VG LG ++I G ++ AG+ +++L +I+ Y K G+V Sbjct: 472 DLANILKAGKLPAPVRIVEEVIVGPTLGQEAIMDGLVSMFAGIAIVILLLIMYYSKGGMV 531 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ N+I TL L+ L + LTLP IAGIVL IG++VD+N+L+ ERI+EE +S+ Sbjct: 532 ANIALVFNIIFTLGFLASLNSVLTLPGIAGIVLTIGMSVDANVLIMERIKEELANGKSLL 591 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 ++++G+ +A+S+IFDSN+T ++ V+LFF G G V+GFA T+ L +L S FTA+ I + Sbjct: 592 TAIELGYDKAFSSIFDSNLTTILTGVILFFLGEGPVKGFATTLVLGVLCSFFTAVYITKL 651 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 +++++ + K +I + + + + V S + I + + GL Sbjct: 652 ILLWMAKNKSDNAISFDTFISKNAFKNLNFDFISKRKIAYVFSSAILIIGLVLTIIQGGL 711 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 N G+DFKGG V PV S +R L G+ + G + + + Sbjct: 712 NLGVDFKGGRSYIVEFKNPVVASDLRDGLNDYFEGNGTEVKTYGSDSKVKITTSYLVEDE 771 Query: 630 AQTRVLEMVKKKIT-----EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 + ++ + I ++ VG ++ ++ ++ S I + +YI Sbjct: 772 SADADKKVEAALVKGAENYAKNSEFKILSSSKVGATVADDIKNASWKAMLASLIGIFLYI 831 Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFALFG-----IEFNLTAVAAVLTLIGYSVNDKV 738 ++RF KW +LG + L D L FA+ E + VAA+LT+IG+S+ND V Sbjct: 832 FLRFKKWQLSLGGVVALFHDTLVVLAIFAILRVFNIDFEIDQVIVAALLTIIGFSINDTV 891 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 V++DR+R+ ++ + +++ SIN TL R++ T++ +SVL + ++GG + F+ Sbjct: 892 VIFDRVRE-FDKESSKLDMASMLNASINSTLSRTIMTTVIVLVSVLILFIFGGETLRGFS 950 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + G+V + S+IFIA P+LL + K A Sbjct: 951 FALLIGVVFGSYSTIFIAVPMLLDLRSKAEKEA 983 Score = 58.5 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 50/262 (19%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN------------------ 42 MRN ++ L ++ + F+ + + A Sbjct: 1 MRNKNLIIALTVIVTALCFFYISFTFVARGVEKDAVDAATTADGKVDIQKKQAYMDSIYN 60 Query: 43 -------------------RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83 ++LGLDL+GG H+VLEV + + ++ F K Sbjct: 61 EPVYNFLGAKYTYKEVKSLELALGLDLQGGMHVVLEVSPVEILQAMAGSNAESA-DFKKA 119 Query: 84 EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143 + R Q +F DS A+ ++ +K +D + Sbjct: 120 IELAKEKQRNSQGTFQQAFFDSYRSIAGANNLSKIFANATNKGKIDIRSTDKDVEK---- 175 Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRL 202 I++ I ++E+S I+R RID+ G + IQR+ + RIL++LPG ++P R+ Sbjct: 176 -------VINEEIDLSVERSFNILRNRIDKFGAIQPNIQRIRGTGRILVELPGVENPQRV 228 Query: 203 RQLLGTTAKMSFHKVLPNNSKK 224 R LL TAK+ F +V Sbjct: 229 RNLLQGTAKLEFMEVYQIYEIA 250 >gi|311745424|ref|ZP_07719209.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Algoriphagus sp. PR1] gi|126577974|gb|EAZ82194.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Algoriphagus sp. PR1] Length = 991 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 210/812 (25%), Positives = 387/812 (47%), Gaps = 43/812 (5%) Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFL 119 D + ++ + LR+ + + G ++++ +I + +E + + + Sbjct: 176 IDTEIENAIERSFNILRTRIDRFGTSQPNIQRIQGSGRIQIELPGVDNQERVRNLLQGVA 235 Query: 120 QGVNSKLNV----------------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163 + ++ +KN T T S+ + + + +A+++ Sbjct: 236 KLQFWEVTEINEIGASLEAINSAYLAEQKNTASTETAATDSLSTENLSPEDSLRNALDEQ 295 Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223 + I S ++ ++ + +R+ + A + L K Sbjct: 296 LNQIDPTNPDASTSPIFSLLKANYGLVYDIKDTVTINRILKRDEYKALLPRDVKLLWGVK 355 Query: 224 KG-FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282 G L + D+ + G + +T +P V + + GAR++ Sbjct: 356 PTVAEDGSELLELYAISTPRGTDQAPLEGDVVTD-ARQVLDQTSRPAVSMQMNAEGARKW 414 Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342 ++T DN G+ +AVVLD V TAPV+N IP+G+++ISGNFT++ A LA +L++GSLP Sbjct: 415 RKLTADNTGRRIAVVLDDYVYTAPVVNGEIPTGQSEISGNFTLQEAQDLANILKSGSLPA 474 Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402 IVEE +G LG +++ +G ++VAGL ++VLFM+ Y K GL+A ++ N+ L Sbjct: 475 PTQIVEESIIGPTLGKEALNQGLISMVAGLAIVVLFMVAYYAKGGLIAIAALVFNIFFIL 534 Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462 +L+ L ++LTLP IAGIVL IG+++D+N+L+ ERI+EE R + +++ G+++A+S Sbjct: 535 GILAQLQSSLTLPGIAGIVLTIGMSIDANVLIFERIKEELRNGVGLLAAINAGYNKAFSA 594 Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 I DSN+T + +L+ G G V+GFAI + + I S F+++ I R ++ ++ + S Sbjct: 595 ILDSNVTTFLTGAILYALGQGPVKGFAIVLMIGIASSFFSSVFITRVIVSWMSKKGDKSS 654 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 I+ + + + I F+ R IS + + + +GL +G+DF GG Sbjct: 655 INFSTPFTKNAL-SSLNIDFLGKRKVAYLISTSIIVLGLGVAAINGLKFGVDFTGGRSYI 713 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM----- 637 V PV S +++ L+ G + + + V Y + + Sbjct: 714 VAFAEPVAASELKTGLDGEFDGSVEVKTYGATNVLKVTTSYLINEDDDASNKEVESKVKE 773 Query: 638 ----------VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + I + VG ++ ++ +I++ IA+ +YI IR Sbjct: 774 GIASVTGLTFTEDAEDLTNQEFAITGSSKVGATVADDIKASSGEAMIVALIAIFLYILIR 833 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFG-----IEFNLTAVAAVLTLIGYSVNDKVVVY 741 F+ W F+L +I LI D + FA+ E + +AAVLT+IGYS+ND V+V+ Sbjct: 834 FRKWQFSLASIIALIHDTLFVIAAFAIASAFGATFEIDQVFIAAVLTVIGYSINDTVIVF 893 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 DR+R+N+ T+ + +IN+TLGR++ TS I ++ + ++GG V+ F+ + Sbjct: 894 DRIRENLDNRGTNR-LVKTFNDAINQTLGRTLITSFTTMIVIIVLLLFGGEVLRGFSFAL 952 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+V SS++IA PI++ + + Sbjct: 953 FIGILVGTYSSVYIATPIVVDLMKREIDQEEL 984 Score = 45.5 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 54 SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113 H+ L V + V G D + K + + K F + + Sbjct: 91 MHVTLAVSPVEIVKGLAGNPKDVAFN--KSVEEAREASKTSDEKYVDLFYSAWQANSSGK 148 Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 ++ + + + + + I+ AIE+S I+R RID+ Sbjct: 149 NLSSIFATA-------ANRGRISLESSDSEILDIIDTEIEN----AIERSFNILRTRIDR 197 Query: 174 IGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225 G S+ + GS RI I+LPG + R+R LL AK+ F +V N Sbjct: 198 FGTSQPNIQRIQGSGRIQIELPGVDNQERVRNLLQGVAKLQFWEVTEINEIGA 250 >gi|60683645|ref|YP_213789.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides fragilis NCTC 9343] gi|253566477|ref|ZP_04843930.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. 3_2_5] gi|60495079|emb|CAH09898.1| putative protein-export transmembrane SecDF protein [Bacteroides fragilis NCTC 9343] gi|251944649|gb|EES85124.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. 3_2_5] gi|301165157|emb|CBW24727.1| putative protein-export transmembrane SecDF protein [Bacteroides fragilis 638R] Length = 1007 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 211/831 (25%), Positives = 380/831 (45%), Gaps = 69/831 (8%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 170 EEVKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE------------------- 161 + + + + ++ VL+ A++ Sbjct: 230 LEFWETYNAKEVAPYLQAADSKLRAVLAHEATVNDTVAAVDSTALAAAEATPDKAVSAAD 289 Query: 162 -------------QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 Q+ +++ + + + + ++ +D + + L Sbjct: 290 SLAAALKGGEKKQQASSADLEQLKKEHPLLAILSVNPNGGPVVGYANYKDTATVNSYLAM 349 Query: 209 ---TAKMSFHKVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 A++ L + + K + G + A ++D Sbjct: 350 KEVAAELPKDLRLKWGVSPFEYDPKGQTFELYAIKSTERNGKAPLEGDVVTDAKDDYDQY 409 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 P V +S + GARR+ +T+ NI K +A+VLD V +AP ++ I G +QI+G+FT Sbjct: 410 GK-PSVSMSMNSDGARRWALLTKQNINKSIAIVLDNYVYSAPNVSNEITGGNSQITGHFT 468 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M +YG Sbjct: 469 PEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYG 528 Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 G++A+ ++ LN TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R Sbjct: 529 FIPGMIANGALVLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELR 588 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + V +L G+S A+S IFDSN+T++I ++LF+FG G +RGFA T+ + IL S FTA Sbjct: 589 SGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTA 648 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + R + + K+ ++ ++ FM + I+ + + I Sbjct: 649 VFMTRLVYEHFMSKDKLLNLTFTSPISKKML-VNTHFDFMGGNKKWLTITGVILLICIGS 707 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 L T GL+ IDF GG V P++ VR + + G VR+ Sbjct: 708 LVTRGLSQSIDFTGGRNFKVQFENPIEPEQVRELISNKFGDANVSVISIGTDKKTVRIST 767 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRE 664 V ++ + E + Q +++ VGP I+ + Sbjct: 768 NYRIQDEGNNVDSEIESYLYEALKPMLTQNITLATFIDRDNHTGGSIISSQKVGPSIADD 827 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717 + I V+ + +A+ +YI IRF+ ++ G++ L D LG ++L F +E Sbjct: 828 IKTSAIWSVVFALVAIGLYILIRFRNIAYSAGSVAALTSDTLMILGAYSLCWGWMPFSLE 887 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + T + A+LT IGYS+NDKVV++DR+R+ LY + + L D S+N TL R++ TS+ Sbjct: 888 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-NVKQLFDDSLNTTLARTINTSL 946 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + I +L + + GG I SFA M G+V+ SS+F+A+PI + + Sbjct: 947 STLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFVASPIAYMMLKNKK 997 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 44/259 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWL 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + K Sbjct: 61 GNYTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--KALAEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ + F K K++ K + +++ E+ VL + Sbjct: 119 TTSQDDVITLFIKEYHKVAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLREE- 171 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + A+ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 172 ----VKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMF 228 A + F + ++ Sbjct: 228 ANLEFWETYNAKEVAPYLQ 246 >gi|53715707|ref|YP_101699.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides fragilis YCH46] gi|52218572|dbj|BAD51165.1| protein-export membrane protein SecD/SecF [Bacteroides fragilis YCH46] Length = 1007 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 211/831 (25%), Positives = 380/831 (45%), Gaps = 69/831 (8%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 170 EEVKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE------------------- 161 + + + + ++ VL+ A++ Sbjct: 230 LEFWETYNAKEVAPYLQAADSKLRAVLAHEATVNDTVAAVDSTALAATEATPDKAVSAAD 289 Query: 162 -------------QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 Q+ +++ + + + + ++ +D + + L Sbjct: 290 SLAAALKGGEKKQQASSADLEQLKKEHPLLAILSVNPNGGPVVGYANYKDTATVNSYLAM 349 Query: 209 ---TAKMSFHKVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 A++ L + + K + G + A ++D Sbjct: 350 KEVAAELPKDLRLKWGVSPFEYDPKGQTFELYAIKSTERNGKAPLEGDVVTDAKDDYDQY 409 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 P V +S + GARR+ +T+ NI K +A+VLD V +AP ++ I G +QI+G+FT Sbjct: 410 GK-PSVSMSMNSDGARRWALLTKQNINKSIAIVLDNYVYSAPNVSNEITGGNSQITGHFT 468 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M +YG Sbjct: 469 PEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYG 528 Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 G++A+ ++ LN TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R Sbjct: 529 FIPGMIANGALVLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELR 588 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + V +L G+S A+S IFDSN+T++I ++LF+FG G +RGFA T+ + IL S FTA Sbjct: 589 SGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTA 648 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + R + + K+ ++ ++ FM + I+ + + I Sbjct: 649 VFMTRLVYEHFMSKDKLLNLTFTSPISKKML-VNTHFDFMGGNKKWLTITGVILLICIGS 707 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 L T GL+ IDF GG V P++ VR + + G VR+ Sbjct: 708 LVTRGLSQSIDFTGGRNFKVQFENPIEPEQVRELISNKFGDANVSVISIGTDKKTVRIST 767 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRE 664 V ++ + E + Q +++ VGP I+ + Sbjct: 768 NYRIQDEGNNVDSEIESYLYEALKPMLTQNITLATFIDRDNHTGGSIISSQKVGPSIADD 827 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717 + I V+ + +A+ +YI IRF+ ++ G++ L D LG ++L F +E Sbjct: 828 IKTSAIWSVVFALVAIGLYILIRFRNIAYSAGSVAALTSDTLMILGAYSLCWGWMPFSLE 887 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + T + A+LT IGYS+NDKVV++DR+R+ LY + + L D S+N TL R++ TS+ Sbjct: 888 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-NVKQLFDDSLNTTLARTINTSL 946 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + I +L + + GG I SFA M G+V+ SS+F+A+PI + + Sbjct: 947 STLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFVASPIAYMMLKNKK 997 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 44/259 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWL 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + K Sbjct: 61 GNYTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--KALAEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ + F K K++ K + +++ E+ VL + Sbjct: 119 TTSQDDVITLFIKEYHKVAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLREE- 171 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + A+ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 172 ----VKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMF 228 A + F + ++ Sbjct: 228 ANLEFWETYNAKEVAPYLQ 246 >gi|89890608|ref|ZP_01202118.1| SecD/SecF/SecDF export membrane protein [Flavobacteria bacterium BBFL7] gi|89517523|gb|EAS20180.1| SecD/SecF/SecDF export membrane protein [Flavobacteria bacterium BBFL7] Length = 1028 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 212/833 (25%), Positives = 372/833 (44%), Gaps = 76/833 (9%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 + ++ + LR + K G+ +++++ + +I + ++ + + D +T Q Sbjct: 185 LKEYMVSAFEVLRKRIDKFGVTQPNIQRLGDSGRILIELPGAKDIKRVEDILTSTAQLEF 244 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI--------- 174 + + + V + + L+ N + + + E Sbjct: 245 WHVYKASEVSQFVIEADTYWAEKLAAKNQESQPADSTEVDEVADAVVDAAQDAADEAVDA 304 Query: 175 -GISESTIQRLGSHRILIQLPGEQDPSR-------------LRQLLGTTAKMSFHKVLPN 220 G ++ +Q+P + + + + Sbjct: 305 VGDILGNDATTDVDGEDAEINYDQNPILSRMLAPGNGTGPVIATFKASDKDLIVGYLNDA 364 Query: 221 NSKKGFMFGVRFLRDSDGNQYLV-----------------EDKVEISGIHLNGATANFDP 263 + +R ++ + G L E + + G + A +F Sbjct: 365 QVRSKLPVELRNVKFAWGLPVLNDELGYEITDLYAIRSNREGEAPLGGAVITDARQDF-E 423 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQIS 320 + + VV +S + GA+ + ++T + + D + N I G +QIS Sbjct: 424 MSGQVVVSMSMNSEGAKIWEDMTTEAYQNGSQIAVVLDDTVYSAPGITNGPITGGSSQIS 483 Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380 GNFT+ A LA +LRAG LP I+++ VG LG ++I G + L+L++++M+ Sbjct: 484 GNFTVADAEDLANVLRAGKLPAGAEIIQKAVVGPSLGKEAISSGLWSFGIALLLVLVWMV 543 Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440 YG+ GL AD ++ +N++ L+ L A LTLP IAGIVL IG++VD+N+L+ ERIRE Sbjct: 544 FYYGRAGLYADIALVVNILFIFGALASLKAVLTLPGIAGIVLTIGISVDANVLIFERIRE 603 Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500 E K +S S+ GF+ A S+I D+NIT + ++LF FG G ++GFA T+ + IL S+ Sbjct: 604 ELAKGKSQADSIKDGFNNALSSILDANITTFLTALILFIFGTGPIQGFATTLMIGILTSL 663 Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560 FTAI I R + + K + +F + I F++ R IS+ F + S Sbjct: 664 FTAIFITRLFIDGYGKNGKSLAFSTPITKNWFR---NVNIDFLKKRKVAYMISLAFVLIS 720 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 LFT LN+GIDF GG V +PV+ + V L + + + G N L Sbjct: 721 AISLFTKSLNFGIDFSGGRTYTVRFEQPVNATEVTKMLSAEDVFGSAEAKTYGSDNQLKI 780 Query: 621 LQYQPGDSVAQTRVLE-------------------MVKKKITEIVPLSTIQNTEIVGPKI 661 D V E +++ I + VGP I Sbjct: 781 STKYGIDGVDAEVTKEIEDKLYANLKQYMPADMDMATFVDVSKDDKQYGIMSNFQVGPTI 840 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------F 714 + +++ + + S I + +YI IRF+ W F+LGA+ + D+ LG F+L F Sbjct: 841 ADDILTGSLYAIFGSLIVVFLYILIRFRKWQFSLGAVAAVFHDVLIVLGVFSLTYDILPF 900 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 +E + +AA+LT+IGYS+ND VVV+DR+R+ + T+ F ++ +I+ T+ R++ Sbjct: 901 NMEIDQAFIAAILTVIGYSLNDTVVVFDRIREFINE-RTNWEFARTVNAAISSTISRTLN 959 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TS+ I +L + +GG I F + + G++V SS+FIA P++ + Sbjct: 960 TSLTTLIVLLAIFTFGGESIQGFMLALIIGVLVGTYSSVFIATPVMFDTMEKS 1012 Score = 48.5 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 25/202 (12%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 + + GLDL+GG +++L++ D + G D + Sbjct: 80 AKEQELQKGLDLKGGINVILQISVKDLLIGMADGSKDP------------------DFRT 121 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 L AD R K+ AD FL+ N+ + + E + I + +N + Sbjct: 122 ALERADERIKDGQADYFDYFLEEFNAIDGAKLGSPDIFSNQEMDGVIDFNMSNSEIEPKL 181 Query: 159 AIEQ------SMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211 ++ + E++R+RID+ G+++ IQR S RILI+LPG +D R+ +L +TA+ Sbjct: 182 RVKLKEYMVSAFEVLRKRIDKFGVTQPNIQRLGDSGRILIELPGAKDIKRVEDILTSTAQ 241 Query: 212 MSFHKVLPNNSKKGFMFGVRFL 233 + F V + F+ Sbjct: 242 LEFWHVYKASEVSQFVIEADTY 263 >gi|260173105|ref|ZP_05759517.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. D2] gi|315921381|ref|ZP_07917621.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695256|gb|EFS32091.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1008 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 209/833 (25%), Positives = 379/833 (45%), Gaps = 74/833 (8%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122 V ++ + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + + + + ++ VL+ A++ + E + S Sbjct: 232 FWETYTAKEVLPAMQSADAKLRAVLAHETTAVDT-AAVDSTKEAQLAEATPAKKNISAAD 290 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 L + E + + + L ++ + + + +D N+YL Sbjct: 291 SLAAALKGDATAAEDKSTANLAEIKKQYPLLAILQLNSSGQGPVVGYANYKDTADINKYL 350 Query: 243 V----------------------------------------EDKVEISGIHLNGATANFD 262 K + G + A FD Sbjct: 351 AMPEVKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 410 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + V ++ + GARR+ ++T+ NIG+ +A+VLD V +AP +N I G++QI+G+ Sbjct: 411 QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 469 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM-IV 381 FT E A LA +L++G +P +IV+E VG LG +SI G + + L++++ FM + Sbjct: 470 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGMFSFIVALIMVMCFMCFL 529 Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 G+VA+ ++F+N T+ +LS A LT+ IAGIVL +G+AVD+N+L+ ER +EE Sbjct: 530 YGFIPGMVANVALFMNFFFTMGILSSFQAALTMSGIAGIVLSLGIAVDANVLIYERTKEE 589 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 R + V +L G+S A+S IFDSN+T++I V+LF FG G +RGFA T+ + IL S F Sbjct: 590 LRSGKGVKQALSDGYSNAFSAIFDSNLTSIITGVILFNFGTGPIRGFATTLIIGILCSFF 649 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561 TA+ + R + K+ ++ + FM I+ + I Sbjct: 650 TAVFMTRVFYDHFMSKDKLLNLKF-QSKFSKNLFVNTHFDFMGTNKKAFIITSAVILICI 708 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 GL+ IDF GG V +P++ VR + + G VR+ Sbjct: 709 ASFVIRGLSQSIDFTGGRNYKVQFEQPIEPEAVRELIANDFGEATVSVIAIGTDKRTVRV 768 Query: 622 QYQPGDSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKIS 662 + V +++++ + +I +++ VGP I+ Sbjct: 769 STNYRINENGNTVDSEIEERLYNAVKPLLTQNISLQTFIDRDNHTGGSIISSQKVGPSIA 828 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715 ++ I V+++ IA+ +YI +RF+ +++G++ L D +G ++L F Sbjct: 829 DDIKTGAIYSVVLALIAIGLYILLRFRNIAYSVGSVVALSCDTVIIIGAYSLLWGIVPFS 888 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 +E + T + A+LT IGYS+NDKVV++DR+R+ LY R L + S+N TL R++ T Sbjct: 889 LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINT 947 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S++ I +L + + GG I SFA M G+++ SS+F+A+PI + + Sbjct: 948 SLSTLIVLLCIFILGGDSIRSFAFAMILGVIIGTLSSLFVASPIAYNMMKNKK 1000 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 60/366 (16%), Positives = 115/366 (31%), Gaps = 47/366 (12%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ I F K K++ L ++ S + Sbjct: 119 INSQDDIITLFVREYHKAAPNAKLSELFAT-----------QQLKDKVNQKSSDAEVEKV 167 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + + A+E S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 168 LRTEVKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 A + F + M E + + A T Sbjct: 228 ANLEFWETYTAKEVLPAMQSADAKL---RAVLAHETTAVDTAAVDSTKEAQLAEATPAKK 284 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 + D + A + T + + I Q SG+ + G + Sbjct: 285 NISAADSLAAALKGDATAAEDKSTANLAEIKKQYPLLAILQLNSSGQGPVVGYANYKDTA 344 Query: 330 ILAAML 335 + L Sbjct: 345 DINKYL 350 >gi|265767346|ref|ZP_06095012.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 2_1_16] gi|263252651|gb|EEZ24163.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 2_1_16] Length = 1007 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 211/831 (25%), Positives = 380/831 (45%), Gaps = 69/831 (8%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 170 EEVKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE------------------- 161 + + + + ++ VL+ A++ Sbjct: 230 LEFWETYNAKEVAPYLQAADSKLRAVLAHEATVNDTVAAVDSTALAAAEATPDKAVSAAD 289 Query: 162 -------------QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 Q+ +++ + + + + ++ +D + + L Sbjct: 290 SLAAALKGGEKKQQASSADLEQLKKEHPLLAILSVNPNGGPVVGYANYKDTATVNSYLAM 349 Query: 209 ---TAKMSFHKVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 A++ L + + K + G + A ++D Sbjct: 350 KEVAAELPKDLRLKWGVSPFEYDPKGQTFELYAIKSTERNGKAPLEGDVVTDAKDDYDQY 409 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 P V +S + GARR+ +T+ NI K +A+VLD V +AP ++ I G +QI+G+FT Sbjct: 410 GK-PSVSMSMNSDGARRWALLTKQNINKSIAIVLDNYVYSAPNVSNEITGGNSQITGHFT 468 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M +YG Sbjct: 469 PEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYG 528 Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 G++A+ ++ LN TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R Sbjct: 529 FIPGMIANGALVLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELR 588 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + V +L G+S A+S IFDSN+T++I ++LF+FG G +RGFA T+ + IL S FTA Sbjct: 589 SGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTA 648 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + R + + K+ ++ ++ FM + I+ + + I Sbjct: 649 VFMTRLVYEHFMSKDKLLNLTFTSPISKKML-VNTHFDFMGGNKQWLTITGVILLICIGS 707 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 L T GL+ IDF GG V P++ VR + + G VR+ Sbjct: 708 LVTRGLSQSIDFTGGRNFKVQFENPIEPEQVRELISNKFGDANVSVISIGTDKKTVRIST 767 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRE 664 V ++ + E + Q +++ VGP I+ + Sbjct: 768 NYRIQDEGNNVDSEIESYLYEALKPMLTQNITLATFIDRDNHTGGSIISSQKVGPSIADD 827 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717 + I V+ + +A+ +YI IRF+ ++ G++ L D LG ++L F +E Sbjct: 828 IKTSAIWSVVFALVAIGLYILIRFRNIAYSAGSVAALTSDTLMILGAYSLCWGWMPFSLE 887 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + T + A+LT IGYS+NDKVV++DR+R+ LY + + L D S+N TL R++ TS+ Sbjct: 888 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-NVKQLFDDSLNTTLARTINTSL 946 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + I +L + + GG I SFA M G+V+ SS+F+A+PI + + Sbjct: 947 STLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFVASPIAYMMLKNKK 997 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 44/259 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWL 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + K Sbjct: 61 GNYTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--KALAEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ + F K K++ K + +++ E+ VL + Sbjct: 119 TTSQDDVITLFIKEYHKVAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLREE- 171 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + A+ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 172 ----VKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMF 228 A + F + ++ Sbjct: 228 ANLEFWETYNAKEVAPYLQ 246 >gi|313205859|ref|YP_004045036.1| protein translocase subunit secf; protein translocase subunit secd [Riemerella anatipestifer DSM 15868] gi|312445175|gb|ADQ81530.1| protein translocase subunit secF; protein translocase subunit secD [Riemerella anatipestifer DSM 15868] gi|315022746|gb|EFT35770.1| bifunctional preprotein translocase subunit SecD/SecF [Riemerella anatipestifer RA-YM] gi|325336704|gb|ADZ12978.1| SecD/SecF [Riemerella anatipestifer RA-GD] Length = 958 Score = 343 bits (879), Expect = 7e-92, Method: Composition-based stats. Identities = 191/809 (23%), Positives = 351/809 (43%), Gaps = 57/809 (7%) Query: 61 DEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADK 114 + + + + +R+ + K G+ ++++ +I + + + + Sbjct: 171 EVKSIIRKKIDAAVGSAYEVIRTRIDKMGVTQPNVQRVPGTGRILVEMPGIKDIDRVKKM 230 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 + + ++ P+ K + + + + ++ +R Sbjct: 231 LQTSAKLQFWEVQQVPEVAPYFEQLSKLVLAKGDSMGVAKTTNFPALLNLNTLR------ 284 Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234 S S + + + P ++ + Sbjct: 285 --SNGVGNIKLSDTATVNKILNSSVALNARPGNIKYTKFLWAYKPESTDPDHLVLYAIRS 342 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 + G + + + VVD+ D G + + +T N+GKP+ Sbjct: 343 NISGKAPV---------DGAVDKANISYDQIGRVVVDMQMDSEGTKDWKILTEKNVGKPV 393 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 AV LD +V TAP + AIP+G+ QISGNFT + A L +L G LP IV+ VG Sbjct: 394 AVTLDDKVYTAPNVVNAIPNGRTQISGNFTQDEAQDLVNVLNTGKLPASAKIVQADVVGP 453 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG SI G + + V IV+++I YG G+ A ++ +N+ ++ + ATLTL Sbjct: 454 SLGQASIDAGMWSFIIAFVFIVVYIIFYYGGAGVFAVIAMIINLFYIFGIMDSMDATLTL 513 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL + +AVD+N+++ ER +EE +++ + GF A S I D ++T L+ Sbjct: 514 PGIAGIVLTMAMAVDTNVIIYERTKEELFAGKNIREAYHDGFKHALSAIVDGHLTTLLTA 573 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 VVL+ FG G ++GFA+T+ + ++++ FT++ + R M I I Sbjct: 574 VVLYIFGTGPIQGFAVTLIIGLIMTFFTSVLLSRVM---IFSRLNKGKGLSVWTPATKNI 630 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 + + F+ R + IS + ++ + + +G G+DF+GG V ++ VD + Sbjct: 631 FRNVWVAFIEKRKFAYIISGILTVICLASIVVNGFKLGVDFEGGRNYVVKFDKTVDAAQA 690 Query: 595 RSNLESLQ------IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM----------- 637 ++L L + + F + Y+ D Sbjct: 691 EASLSQLFQTKDGKNNSVDVKTFGTSNQLKITTDYKIDDESLAADQEIEAKLFEGLKSNY 750 Query: 638 -----VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691 + K + I ++ VGP ++ ++ G V+ S + + IYI RF+ W Sbjct: 751 PTGYTLDKFKSAEGDNLGIVSSTKVGPSVADDIKIGGTFAVLASLLGIFIYILFRFRRWQ 810 Query: 692 FALGAITTLILDITKTLGFFALF------GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 F+LGA+ L D LG ++LF +E N +AA+LT++GYS+ND V+V+DR+R Sbjct: 811 FSLGAVLALFHDAIIILGAYSLFYKVSPFNMEINQDFIAAILTVLGYSINDTVIVFDRIR 870 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 + ++ S + L + SI+ TLGR++ TS+ + +L + ++GG + F + GI Sbjct: 871 EYLRE-RKSTTLAGLFNDSISSTLGRTINTSLTVLMVILAIFIFGGDSLRGFMFALLLGI 929 Query: 806 VVAASSSIFIAAPILL-FIYDWRAKNARI 833 SSIFIA+ I F+ + ++ +I Sbjct: 930 GFGTYSSIFIASGIAYDFLKGKKQEDIKI 958 >gi|333029604|ref|ZP_08457665.1| protein-export membrane protein SecD [Bacteroides coprosuis DSM 18011] gi|332740201|gb|EGJ70683.1| protein-export membrane protein SecD [Bacteroides coprosuis DSM 18011] Length = 982 Score = 343 bits (879), Expect = 7e-92, Method: Composition-based stats. Identities = 214/825 (25%), Positives = 392/825 (47%), Gaps = 55/825 (6%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112 D + + ++ D LR+ + + G+ +++Q +I + + E + Sbjct: 161 ADVEKILRSEVKSAVDNSYNVLRTRIDRFGVVQPNIQQLEGGLGRIMIELPGIKEPERVR 220 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172 + + + + + + ++ +L+ N A+ + +E + Sbjct: 221 KLLQGSANLEFWETYTSAEVTPALQSVDARLAQILNNNQDLAQKEEALLKQLEEGGDSLA 280 Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG-----TTAKMSFHKVLPNNS---KK 224 ++ + G ++ + Q P R + G TA ++ + Sbjct: 281 ISKEIDAIHAQQGVNQNPLLSKLHQSPYRESAVAGYSQVRDTATINGYLAKEEVKKLLPS 340 Query: 225 GFMFGVRFLRDSDGNQYLV--------EDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 D N + K + G + A + +D PVV + + Sbjct: 341 NLSLKWGVAPDRTTNLVTLYAIKETERNGKAPLEGDVVTDAKSEYDQYN-NPVVSMEMNS 399 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR++ ++T+ NIG+ +A+VLDG V +AP +N I G++QISGNFT++ LA +L+ Sbjct: 400 DGARKWAQLTKKNIGRAIAIVLDGYVYSAPNVNSEITGGRSQISGNFTVDETTDLANVLK 459 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI-VLYGKWGLVADFSIF 395 +G +P IV+E +G LG SI G + V LVL++++M + G++A+ ++ Sbjct: 460 SGKMPAPARIVQEDIIGPSLGQASINAGIISFVIALVLLMIYMCSIYGIIPGMIANGALI 519 Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455 N+ TL +L+ A LTL IAG+VL +G+AVD+N+L+ ER REE R + V +L G Sbjct: 520 FNLFFTLGILASFQAALTLSGIAGMVLALGMAVDANVLIYERTREELRAGKGVKAALKDG 579 Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 ++ A+S IFDSN+T++I ++LF FG G +RGFA T+ + I +S FTA+ + R + + Sbjct: 580 YANAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGIAVSFFTAVFLTRVVYDHFL 639 Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575 R K+ ++ + + FM ++ + + + LFT GL+ IDF Sbjct: 640 RKDKLLNLSFSSSISK-KMFVDPKFDFMGGNKKYFILTGVIIVVCLGFLFTRGLSQSIDF 698 Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGD---------ISFQNFDGEKNFLVRLQYQPG 626 GG V + V+ VR+ + + + N+ + + Sbjct: 699 TGGRNFKVQFEQEVEPEHVRNLISDKFGDEATVSVIAIGTDHKTVRISTNYRINESSETV 758 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIV-----------GPKISRELIRKGIVGVII 675 DS + + E +K +T+ + L T + E GP I+ ++ V++ Sbjct: 759 DSEIEAFLYETLKPLLTQNISLETFIDRENHTGGSIISSQKVGPSIADDIKTGAFWSVVL 818 Query: 676 SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF-------GIEFNLTAVAAVL 727 + IA+ +YI +RF+ +++G++ L D LG +++F +E + T + A+L Sbjct: 819 AVIAIGLYILVRFRNIAYSVGSVVALTSDTLMILGVYSMFWGTFLPFSLEIDQTFIGAIL 878 Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787 T IGYS+NDKVV++DR+R+ LY + L ++S+N TL R++ TS++ I +L + Sbjct: 879 TAIGYSINDKVVIFDRVREYFGLYPKRDKY-QLFNESLNTTLSRTINTSLSTLIVLLCIF 937 Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + GG I SF+ M G++ SS+F+A+PI I + + N + Sbjct: 938 ILGGDSIRSFSFAMILGVLFGTFSSLFVASPIAYIIMNKQKNNNK 982 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 82/181 (45%), Gaps = 7/181 (3%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 +I+GP + + I GI+ +I+ + ++IY+ + + A LI ++ TLG A Sbjct: 471 QEDIIGPSLGQASINAGIISFVIALVLLMIYMCSIYGIIPGMIANGALIFNLFFTLGILA 530 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F L+ +A ++ +G +V+ V++Y+R R+ ++ + + Sbjct: 531 SFQAALTLSGIAGMVLALGMAVDANVLIYERTREELRA---GKGVKAALKDGYANAFSAI 587 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++ + I+ + + +G I FA + GI V S F A + +YD + + Sbjct: 588 FDSNLTSIITGIILFNFGTGPIRGFATTLIIGIAV----SFFTAVFLTRVVYDHFLRKDK 643 Query: 833 I 833 + Sbjct: 644 L 644 Score = 69.3 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 95/270 (35%), Gaps = 43/270 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ I + + + + + + Sbjct: 1 MQNKGFVKVFAVLLTLICVFYLSFSVVTSQQMKKAKAYANGNATLEQEYLDSLSNKKVWL 60 Query: 40 -------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + I LGLDL+GG +++LEV D + DE + K Sbjct: 61 GYTLKQCREMEIGLGLDLKGGMNVILEVSVPDVIRTLADNKPDEEFN--KALDTASKLAI 118 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 QN + F K ++ K L+ T + + Sbjct: 119 SSQNDLISLFVKEYQKLAPGKSLSSIFATKQLKG-------LVTQNTSDAD----VEKIL 167 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS--HRILIQLPGEQDPSRLRQLLGTTA 210 + A++ S ++R RID+ G+ + IQ+L RI+I+LPG ++P R+R+LL +A Sbjct: 168 RSEVKSAVDNSYNVLRTRIDRFGVVQPNIQQLEGGLGRIMIELPGIKEPERVRKLLQGSA 227 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + F + + + V N Sbjct: 228 NLEFWETYTSAEVTPALQSVDARLAQILNN 257 >gi|313204457|ref|YP_004043114.1| protein translocase subunit secf;protein translocase subunit secd [Paludibacter propionicigenes WB4] gi|312443773|gb|ADQ80129.1| protein translocase subunit secF;protein translocase subunit secD [Paludibacter propionicigenes WB4] Length = 1009 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 208/845 (24%), Positives = 373/845 (44%), Gaps = 75/845 (8%) Query: 60 VDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADK 114 D + + + LR + + G+ ++++ +I + + E + Sbjct: 162 ADVVKVLKTEVDGAIANSFNVLRERIDRFGVVQPNIQKLGNGRILIELPGVKEPERVRKL 221 Query: 115 VTLFLQGVNSKLNV---------DPKKNLLVTTTEKEISIV------------------- 146 + + + K + +++V Sbjct: 222 LQGSANLEFWETYELNEIINNLSEANKVIATIQKNGGVAVVKDSTAATTPTSTTAKTATT 281 Query: 147 ---------------LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 + Q+ A + I + ++ I+ Sbjct: 282 ASKTPALSKVDSLKAVLQHKNASATDSAKVLEKSQKENPLFAILQVNAQGGQVARGPIVG 341 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 +D +++ S K + + + + Sbjct: 342 -YAHSKDTAQINSYFNIKQVKEALPRDLGLRWSVKSIDKKGEIFQLIAIKITNRDGRAPL 400 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309 +G + A A+F + + V +S ++ GA+ + +T+DNIGK +A+ LDG + + P +N Sbjct: 401 AGDVITDARADFSQNSSEAQVSMSMNQEGAKTWARMTKDNIGKSIAIALDGYIYSFPTVN 460 Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369 I G +QI+G+FT++ A LA L++G +P +IV+E VG LG ++I G + + Sbjct: 461 TEIDGGNSQITGHFTVDEAKDLANTLKSGKMPAPAHIVQEDIVGPSLGQEAINNGLISFI 520 Query: 370 AGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 +L++++MIV YG GLVAD ++ NV + +L+ G+ LTLP IAGIVL +G+AV Sbjct: 521 IAFILVLVYMIVYYGLIPGLVADIALLANVFFLIGILASFGSVLTLPGIAGIVLTMGMAV 580 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 D+N+L+ ERIREE R +++ + GF A + I DSN+T L++ +VL FG G ++GF Sbjct: 581 DANVLIYERIREEMRNGKNMRAGIQEGFKHALNAIIDSNVTTLLSGIVLVIFGQGPIKGF 640 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548 +T+ IL + TA+ + R M+ + K + I FM+ R Sbjct: 641 GVTLSFGILTTFITAVFLTRYMIEAYAARENAKELPF-HTKISEHFLQNTKIDFMKIRKS 699 Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608 +S + S G + GIDF GG V ++PV V++ L+ GD+ Sbjct: 700 MYVLSAALFLISFVSFAVRGFSLGIDFTGGRNYVVSFDKPVKTEEVKTLLKDAFEGDLPQ 759 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI------------TEIVPLSTIQNTEI 656 G N + + E+ K I+++ Sbjct: 760 VITIGNDNQVRISTKYKINEDGSNIDNEIESKLYTNLKSMLNSNVTEAQFIKDNIKSSSK 819 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL-- 713 VGP ++ ++ + VI++ + + +YI IRF+ W + LGA+ +L D+ T+G F+L Sbjct: 820 VGPAVADDIKTSAVWAVILAVLGIGLYILIRFREWGYTLGAVVSLAHDVVITMGIFSLLY 879 Query: 714 ----FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F +E + + +AA+LT++GYS+ND V+ YDR+R+N+ LY +I+ S+N+ L Sbjct: 880 GLLPFSMEIDQSFIAAILTVLGYSINDTVINYDRIRENVTLYPKRDRIT-IINDSVNQML 938 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD--WR 827 GR+ T+ I+++ M ++GG I F M FGI + SS+FIA+PI + + Sbjct: 939 GRTFSTTFTVIITLIAMFIFGGDSIRGFIFAMLFGIFIGTYSSVFIASPITVEMDKLVKI 998 Query: 828 AKNAR 832 K+ + Sbjct: 999 RKSKK 1003 Score = 64.7 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 40/271 (14%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N + I + + + + + + Sbjct: 1 MQNKGLVRIFALALTLVCIFYLSFSVVTSHYNAKAKEYAKGDKMKEFNYLDSLASENIWL 60 Query: 40 -------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + I+LGLDL+GG ++ LEV D + ++ + + + Sbjct: 61 GYTLKECREKEIALGLDLKGGMNVTLEVSVADIIRSLSDFNTNPNFNLALAKATQLQKTN 120 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 + I L + L + S + K + +TT+ ++ VL Sbjct: 121 SQVSYIDLFVKAYTELDP-----QAKLSTIFSTF--ELKDKISLTTSNADVVKVL----- 168 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 + AI S ++R+RID+ G+ + IQ+LG+ RILI+LPG ++P R+R+LL +A + Sbjct: 169 KTEVDGAIANSFNVLRERIDRFGVVQPNIQKLGNGRILIELPGVKEPERVRKLLQGSANL 228 Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243 F + N + + + V Sbjct: 229 EFWETYELNEIINNLSEANKVIATIQKNGGV 259 >gi|224537587|ref|ZP_03678126.1| hypothetical protein BACCELL_02467 [Bacteroides cellulosilyticus DSM 14838] gi|224520784|gb|EEF89889.1| hypothetical protein BACCELL_02467 [Bacteroides cellulosilyticus DSM 14838] Length = 999 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 214/821 (26%), Positives = 375/821 (45%), Gaps = 61/821 (7%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122 V + + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 172 VKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231 Query: 123 NSK---------------------LNVDPKKNLLVTTTEKEISIVLSQNNIDQ------V 155 + L + + + + + + + D Sbjct: 232 FWETYNAKDVAPYLQAADNKLRNILANEAPADSVAVDSTAAPVVAQATSTADSLAAALKG 291 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 + A + I++ + + + G D ++ + A++ Sbjct: 292 ENKAQSVDLAQIKKEHPLLAVLQVNSSGQGPVVAYANYKDTADINKYLSMKEIQAELPKD 351 Query: 216 KVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274 L + + + + G + A +D V +S Sbjct: 352 LRLKWGVSAYEYDPKGQTFELYAIRSTERNGRAPLEGDVVVSAKDEYDQFGKPA-VSMSM 410 Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334 + G+RR+ ++T+ NIGK +A+VLDG V +AP +N I G +QI+G+FT E A LA + Sbjct: 411 NTDGSRRWAQLTKQNIGKSIAIVLDGYVYSAPNVNTEITGGNSQITGHFTPEQAKDLANV 470 Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFS 393 L++G +P IV+E VG LG SI G + + L+L++++M +YG G+VA+ + Sbjct: 471 LKSGKMPAPARIVQEDIVGPSLGQASINAGVFSFIVALILLMIYMCSMYGFIPGMVANGA 530 Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453 + LN+ T+ +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R + V +L Sbjct: 531 LVLNMFFTMGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRAGKGVKKALA 590 Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513 G+S A+S IFDSN+T++I V+LF FG G +RGFA T+ + ILIS FTA+ + R + + Sbjct: 591 DGYSNAFSAIFDSNLTSIITGVILFNFGTGPIRGFATTLIIGILISFFTAVFMTRLVYEY 650 Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 + K ++ + L + FM I+ + + I LF GL+ I Sbjct: 651 FMNKDKWLNLTFSSKISKNL-MTNVHFDFMGRNKQWFTITGIILVICIGSLFVRGLSQSI 709 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 DF GG V V+ VR + S G VR+ Sbjct: 710 DFTGGRNFKVQFENAVEPEQVRELIASKFGDSNVSVIAIGTDKKTVRISTNYRIEEEGNN 769 Query: 634 VLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRELIRKGIVGVI 674 V ++ + E + Q +++ VGP I+ ++ + V+ Sbjct: 770 VDSEIEAYLYETLKPVLTQNITLETFIDRENHTGGSIVSSQKVGPSIADDIKTSAMWSVV 829 Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVL 727 ++ IA+ +YI IRF+ +++G++ L D LG ++L F +E + T + A+L Sbjct: 830 LALIAIGLYILIRFRNIAYSVGSVAALTSDTLMILGAYSLCWGWMPFSLEIDQTFIGAIL 889 Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787 T IGYS+NDKVV++DR+R+ LY + L + S+N TL R++ TS++ I +L + Sbjct: 890 TAIGYSINDKVVIFDRVREFFGLYPKR-DRKQLFNDSLNTTLARTINTSLSTLIVLLCIF 948 Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + GG I SFA M G+V+ SS+FIA+PI + + Sbjct: 949 ILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYMMMKNKK 989 Score = 74.7 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 103/282 (36%), Gaps = 46/282 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLANEKVFF 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + ++ Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFNQALA-NAAKQAI 119 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQN 150 + ITL V + + +++L+ L ++ S + Sbjct: 120 SSQDDVITL-------------FVREYHKIAPDARLSELFATQQLKDKVNQKTSDAEVEK 166 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208 + + A++ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL Sbjct: 167 VLRTEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQG 226 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 +A + F + ++ + D V + Sbjct: 227 SANLEFWETYNAKDVAPYLQAADNKLRNILANEAPADSVAVD 268 >gi|255037347|ref|YP_003087968.1| bifunctional preprotein translocase subunit SecD/SecF [Dyadobacter fermentans DSM 18053] gi|254950103|gb|ACT94803.1| protein-export membrane protein SecD [Dyadobacter fermentans DSM 18053] Length = 996 Score = 342 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 196/806 (24%), Positives = 374/806 (46%), Gaps = 42/806 (5%) Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQ 120 ++G + ++ + K G+ ++++ QN++ + E + ++ + Sbjct: 174 KTEIDGSIDRAFQITQARIDKFGVTNPNIQRLPGQNRVLVELPGVDNPERVRRLLSGAAK 233 Query: 121 GVNSK-----------------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163 ++ L + + + + + S A + Sbjct: 234 LEFAEVYLTQELGAGLEGLGRYLTQQAEIEKAAKKSAPATASADTAASDTTKKSTAGGLA 293 Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223 ++ ++ S + + + L + L+ + + +V Sbjct: 294 AQLEQKSDTAATDSAALAAQSAALTSLFVPMPQGLGVYLKDTARASEILRRPEVRSLFPA 353 Query: 224 KGFMFGVRFLRDSDGNQYLV--------EDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 R ++ GNQ ++ + + G + + +P V + + Sbjct: 354 DLVFMWDRKGTEAGGNQLILPLYFIKKTNGEAAMEGDVIVD-ATHDYDDRGRPEVTMRMN 412 Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335 GAR++ +T ++G+P+A+++D V TAP + IP+G + I+G+FT+E +A +L Sbjct: 413 GEGARKWRSLTARSVGRPVAIIIDNLVYTAPTVQGEIPNGNSSITGSFTVEETKDMANVL 472 Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395 +AG LP +IVEE VG+ LG+++I G + GL+++++FM+ Y + G +AD ++ Sbjct: 473 KAGKLPAPTHIVEEAVVGSSLGAEAINDGLMSSAVGLLIVLVFMVAYYNQAGWIADIALL 532 Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455 +N+ L +++ LGA LTL IAGIVL IG+AVD+N+L+ E I+ E + + S+ G Sbjct: 533 INLFFLLGVMASLGAVLTLSGIAGIVLSIGMAVDANVLIYEGIKAELAEGKPFAQSIRDG 592 Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 F + + I DSN+T L+ ++L+ FG G V GFA T+ L +L S+F+AI I R ++ Sbjct: 593 FKHSLTAIIDSNVTTLLTGIILYTFGTGLVLGFATTLVLGLLTSLFSAIFITRLLLE--- 649 Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575 + K + F+ R IS + + G GIDF Sbjct: 650 QKLKNGKTFAFATNLTKNWFKDNDFDFVSQRRRFYVISGIIIAIGVGSFIFKGFGLGIDF 709 Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD---SVAQT 632 KGG V VD +R+N++ + + F G+ + Y D Q Sbjct: 710 KGGRSYVVRFENNVDADALRANMDDVLGSTTEVKTFGGQDQVKITTPYLIEDTTPEADQK 769 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691 ++++ + I ++ VGP ++++ + + V+++ A +YI IRF + Sbjct: 770 AEAKILEATQKIANNPAKIVSSNKVGPTMAKDTLWSAVYAVLLALAANFVYILIRFKRVA 829 Query: 692 FALGAITTLILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 F+ GA+ +L D+ L F+LF ++ + + A+LT+IGYS+ND VV+YDR+R Sbjct: 830 FSYGAVMSLAHDVVIILAIFSLFNGWLPWSLDIDQAFIGAILTMIGYSMNDTVVIYDRIR 889 Query: 746 KNMK-LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 + + S +I+ ++N TL R+ T ++ + ++ + ++GG+VI F M G Sbjct: 890 DYLADEKSRGQSLSTVINNALNSTLSRTAVTGISVILVLIVLMIFGGAVIRGFTFCMLLG 949 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++V SS+F+AAPI++ + KN Sbjct: 950 VIVGTYSSLFVAAPIVVDLLQRSQKN 975 Score = 58.9 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 15/201 (7%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKKEGIGVFSMRQIQNKIT 99 + ++LGLDL+GG H+VLEV D + G + Sbjct: 74 ERELNLGLDLQGGMHVVLEVAPADILKGMAGGNARSAAFQS--ALKKAGEDKSANNSTFI 131 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 F + + + + + + + I + I + Sbjct: 132 NRFVSAYKEAAPNTSLASVFA-------TSANRGKINSNSSDSDVIKML----KTEIDGS 180 Query: 160 IEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218 I+++ +I + RID+ G++ IQRL +R+L++LPG +P R+R+LL AK+ F +V Sbjct: 181 IDRAFQITQARIDKFGVTNPNIQRLPGQNRVLVELPGVDNPERVRRLLSGAAKLEFAEVY 240 Query: 219 PNNSKKGFMFGVRFLRDSDGN 239 + G+ Sbjct: 241 LTQELGAGLEGLGRYLTQQAE 261 >gi|312131489|ref|YP_003998829.1| proteiN-export membrane protein secd [Leadbetterella byssophila DSM 17132] gi|311908035|gb|ADQ18476.1| protein-export membrane protein SecD [Leadbetterella byssophila DSM 17132] Length = 969 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 208/793 (26%), Positives = 375/793 (47%), Gaps = 33/793 (4%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVN 123 ++G +++ + K G+ ++ + N+I + E + ++ + Sbjct: 175 IDGAFDRAYKVIQTRVDKFGVSNANLSKIPGTNRIQVELPGVDNPERVRKLLSGSAKLEF 234 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 ++ + + ++ + S A + + + ++S Sbjct: 235 CEVY--TLQEISPNFERFTSLLMKIDAENKKGSSTAAAATTDTTTNSLASALQAKSDSSA 292 Query: 184 LGSHRILIQLPGE------------QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231 L S L +D SRL ++ M Sbjct: 293 LDSTANANSLMNMFIVTPQGLAIKTKDTSRLNSIMKRPDAMGIFPADMTFLYDVNPIEGT 352 Query: 232 FLRDSDGNQYLVE--DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 + N Y ++ + G + A ++DP T KP V + + +GAR++ E+T N Sbjct: 353 STTEDLVNIYPIKNFGNAPLGGEVITEARQDYDPMTGKPNVSMQMNTVGARKWKELTAKN 412 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 G+ +A++LD V +AP +N IP+G + I+G+F+IE A LA +L+AG LP IVEE Sbjct: 413 TGRSIAIILDNYVYSAPNVNGEIPNGSSSITGSFSIEQAQDLANVLKAGKLPAPTTIVEE 472 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 VGA +GS ++ G + + GLV +++F+++ Y G +A+ ++ +N+IL L +++ G Sbjct: 473 AVVGASVGSQALNAGVISSLVGLVAVLIFVVMYYSSAGWIANLALIVNLILLLGIMASFG 532 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 AT+TLP IAG+VL +G++VD+N+L+ ER++EE ++ ++ +GF A +I DS +T Sbjct: 533 ATMTLPGIAGMVLSVGMSVDANVLIYERVKEELAAGKNFATAIALGFKNAMPSIIDSQLT 592 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529 ++I V+LF FG G V+GFA T+ + I S+F AI + R + +I+ K + Sbjct: 593 SVITGVILFIFGTGLVKGFATTLLIGIGTSLFCAIFVSRLIFDNLIKKGKTINFRTA--- 649 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + I F++ R +S + + I + G + G+DFKGG + V Sbjct: 650 WTEKLFGDTNIDFIKNRNRFYTVSGILIVAGIISIAVRGFSLGVDFKGGRTFEAKFEKNV 709 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL----EMVKKKITEI 645 + +R ++++ G G + + D E+ K + Sbjct: 710 NTDEIRDAVQNVFPGSAVEVKTYGGFDRVKITSAYKIDDTDIQTDETLKSELSKAIASVN 769 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY-FALGAITTLILDI 704 + +T VG I+++ I + VI + I IYI IRF+ F GA+ LI D+ Sbjct: 770 GNKGEVVSTSKVGANIAQDTIWASVKAVIYAIILTFIYILIRFRNQAFGWGAVLALIHDV 829 Query: 705 TKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISF 757 LG F++F ++ + + AVLTL+GYS+ND +V+YDR+R+ M + + S Sbjct: 830 AIILGIFSIFHGWLPVSLDIDQAFIGAVLTLMGYSLNDTIVIYDRIREYMAEKSNQTQSI 889 Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817 +I+ ++N TL R+ T A I + + ++GG I F M G++V SS+FI+A Sbjct: 890 ETVINNALNSTLSRTAVTGFATLIVLFVLLIFGGETIRGFIFCMFVGVIVGTYSSLFISA 949 Query: 818 PILLFIYDWRAKN 830 P ++ + +AK Sbjct: 950 PFVVDALNRKAKK 962 >gi|255689969|ref|ZP_05413644.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides finegoldii DSM 17565] gi|260624576|gb|EEX47447.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides finegoldii DSM 17565] Length = 1004 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 217/828 (26%), Positives = 377/828 (45%), Gaps = 68/828 (8%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122 V ++ + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-------------------------- 156 + + + + + ++ +L++ Sbjct: 232 FWETYTAKEVLPSMQSADAKLRAILAEETTTDGDTIETAVLTEATPVETKAVSAADSLAA 291 Query: 157 --------SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 S +ME ++++ + + + G D ++ + Sbjct: 292 ALKGDTTASEKPSVNMEELKKQYPLLSMLQLNSSGQGPVIGYANYKDTADINKYLAMPEI 351 Query: 209 TAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 A++ L F + K + G + A FD + Sbjct: 352 KAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFDQYSKP 411 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V ++ + GARR+ ++T+ NIG+ +A+VLD V +AP +N I G++QI+G+FT E Sbjct: 412 A-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGHFTPEQ 470 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-W 386 A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M +YG Sbjct: 471 AKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYGFIP 530 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G+VA+ ++FLN TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R + Sbjct: 531 GMVANGALFLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGK 590 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 V +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + IL+S FTA+ + Sbjct: 591 GVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFFTAVFM 650 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566 R + + K +++ L FM + I I I Sbjct: 651 TRLVYEHFLSKDKWQNLTFTTKISKNL-MANTHFDFMGTNKKSLIIVSAVIIVCIGSFAI 709 Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 GL+ IDF GG V PV+ VR + S G VR+ Sbjct: 710 RGLSQSIDFTGGRNFKVQFENPVEPEQVRELISSKFGDANVSVIAIGTDKKTVRISTNYR 769 Query: 627 DSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRELIR 667 V ++ + + +I +++ VGP I+ ++ Sbjct: 770 IEDGGNNVDSEIESYLYETLKPLLTQNIDLATFIDRDNHTGGSIVSSQKVGPSIADDIKT 829 Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNL 720 I V+++ IA+ +YI IRF+ +++G+I L D +G ++L F +E + Sbjct: 830 GAIWSVVLALIAIGLYILIRFRNIAYSIGSIAALTCDTIMIIGAYSLFWGILPFSLEIDQ 889 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 T + A+LT IGYS+NDKVV++DR+R+ LY R L + S+N TL R++ TS++ Sbjct: 890 TFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINTSLSTL 948 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 I +L + + GG I SFA M G+V+ SS+FIA+PI + Sbjct: 949 IVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNFMKNKK 996 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 53/354 (14%), Positives = 107/354 (30%), Gaps = 44/354 (12%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ I F K K++ L ++ + + Sbjct: 119 INSQDDIITLFIREYHKAAPEAKLSELFAT-----------QQLKDKVNQKSTDTEVEKV 167 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + + A+E S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 168 LRAEVKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 A + F + M + + D I L AT Sbjct: 228 ANLEFWETYTAKEVLPSMQSADAKLRAILAEETTTDGDTIETAVLTEATPVETKAVSAAD 287 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 + + + + + L + + Sbjct: 288 SLAAALKGDTTASEKPSVNMEELKKQYPLLSMLQLNSSGQGPVIGYANYKDTAD 341 >gi|299144764|ref|ZP_07037832.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides sp. 3_1_23] gi|298515255|gb|EFI39136.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides sp. 3_1_23] Length = 1007 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 221/833 (26%), Positives = 385/833 (46%), Gaps = 75/833 (9%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122 V ++ + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + + + + ++ VL+Q A++ + E S S Sbjct: 232 FWETYTAKEVLPAMQSADAKLRAVLAQETGADST--AVDSTKEAPLAEATPAKKSVSAAD 289 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 L + E + + + + L ++ + + + +D N+YL Sbjct: 290 SLAAALKGDATTTEDNSTANLAEIKKQYPLLAILQLNSSGQGPVIGYANYKDTADINKYL 349 Query: 243 V----------------------------------------EDKVEISGIHLNGATANFD 262 K + G + A FD Sbjct: 350 AMPEVKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 409 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + V ++ + GARR+ ++T+ NIG+ +A+VLD V +AP +N I G++QI+G+ Sbjct: 410 QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 468 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 FT E A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M ++ Sbjct: 469 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGVFSFVVALILLMIYMCMM 528 Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 YG G++A+ ++FLN L +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE Sbjct: 529 YGFIPGMIANGALFLNFFFVLGVLSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 588 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 R + V +L G+S A+S IFDSN+T++I V+LF FG G +RGFA T+ + IL+S F Sbjct: 589 LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGVILFNFGTGPIRGFATTLIIGILVSFF 648 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561 TA+ + R + + K+ ++ L FM + I++ + I Sbjct: 649 TAVFMTRIVYEHFMNKDKLLNLTFTTPVSRNL-MTNTRFDFMGTNKKSLIITVAIILVCI 707 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 GL+ IDF GG V PV+ +R + S G VR+ Sbjct: 708 GSFAMRGLSQSIDFTGGRNFKVQFENPVEPEQIRELISSKFGDANVSVIAIGTDKKTVRI 767 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKIS 662 A V ++ + E + Q +++ VGP I+ Sbjct: 768 STNYRIEDAGNDVDSQIEAYLYETLKPVLTQNITLATFIDRDNHTGGSIVSSQKVGPSIA 827 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715 ++ I V+++ IA+ +YI IRF+ +++G+I L D +G ++L F Sbjct: 828 DDIKTGAIYSVVLALIAIGLYILIRFRNIAYSIGSIVALSCDTIMIIGAYSLLWGIVPFS 887 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 +E + T + A+LT IGYS+NDKVV++DR+R+ LY R L + S+N TL R++ T Sbjct: 888 LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINT 946 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S++ I +L + + GG I SFA M G+V+ SS+FIA+PI + + Sbjct: 947 SLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 999 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 99/281 (35%), Gaps = 44/281 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ I F K K++ K + +++ E+ VL Sbjct: 119 VNSQDDIITLFVREYHKAAPNAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + A+E S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 A + F + M + Q D + Sbjct: 228 ANLEFWETYTAKEVLPAMQSADAKLRAVLAQETGADSTAVD 268 >gi|160884107|ref|ZP_02065110.1| hypothetical protein BACOVA_02083 [Bacteroides ovatus ATCC 8483] gi|156110449|gb|EDO12194.1| hypothetical protein BACOVA_02083 [Bacteroides ovatus ATCC 8483] Length = 1007 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 220/833 (26%), Positives = 385/833 (46%), Gaps = 75/833 (9%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122 V ++ + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + + + + ++ VL+Q A++ + E S S Sbjct: 232 FWETYTAKEVLPAMQSADAKLRAVLAQETDADST--AVDSTKEAPLAEATPAKKSVSAAD 289 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 L + E + + + + L ++ + + + +D N+YL Sbjct: 290 SLAAALKGDATTTEDNSTANLAEIKKQYPLLAILQLNSSGQGPVIGYANYKDTADINKYL 349 Query: 243 V----------------------------------------EDKVEISGIHLNGATANFD 262 K + G + A FD Sbjct: 350 AMPEVKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 409 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + V ++ + GARR+ ++T+ NIG+ +A+VLD V +AP +N I G++QI+G+ Sbjct: 410 QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 468 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 FT E A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M ++ Sbjct: 469 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGVFSFVVALILLMIYMCMM 528 Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 YG G++A+ ++FLN L +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE Sbjct: 529 YGFIPGMIANGALFLNFFFVLGVLSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 588 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 R + V +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + IL+S F Sbjct: 589 LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFF 648 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561 TA+ + R + + K+ ++ L FM + I++ + I Sbjct: 649 TAVFMTRIVYEHFMNKDKLLNLTFTTPVSRNL-MTNTRFDFMGTNKKSLIITVAIILVCI 707 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 GL+ IDF GG V PV+ +R + S G VR+ Sbjct: 708 GSFAMRGLSQSIDFTGGRNFKVQFENPVEPEQIRELISSKFGDANVSVIAIGTDKKTVRI 767 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKIS 662 A V ++ + E + Q +++ VGP I+ Sbjct: 768 STNYRIEDAGNDVDSQIEAYLYETLKPVLTQNITLATFIDRDNHTGGSIVSSQKVGPSIA 827 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715 ++ I V+++ IA+ +YI IRF+ +++G+I L D +G ++L F Sbjct: 828 DDIKTGAIYSVVLALIAIGLYILIRFRNIAYSIGSIVALSCDTIMIIGAYSLLWGIVPFS 887 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 +E + T + A+LT IGYS+NDKVV++DR+R+ LY R L + S+N TL R++ T Sbjct: 888 LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINT 946 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S++ I +L + + GG I SFA M G+V+ SS+FIA+PI + + Sbjct: 947 SLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 999 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 94/249 (37%), Gaps = 44/249 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ I F K K++ K + +++ E+ VL Sbjct: 119 VNSQDDIITLFVREYHKAAPNAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + A+E S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVL 218 A + F + Sbjct: 228 ANLEFWETY 236 >gi|237718981|ref|ZP_04549462.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. 2_2_4] gi|229451759|gb|EEO57550.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. 2_2_4] Length = 1007 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 220/833 (26%), Positives = 385/833 (46%), Gaps = 75/833 (9%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122 V ++ + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + + + + ++ VL+Q A++ + E S S Sbjct: 232 FWETYTAKEVLPAMQSADAKLRAVLAQETGADST--AVDSTKEAPLAEATPAKKSVSAAD 289 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 L + E + + + + L ++ + + + +D N+YL Sbjct: 290 SLAAALKGDATTTEDNSTANLAEIKKQYPLLAILQLNSSGQGPVIGYANYKDTADINKYL 349 Query: 243 V----------------------------------------EDKVEISGIHLNGATANFD 262 K + G + A FD Sbjct: 350 AMPEVKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 409 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + V ++ + GARR+ ++T+ NIG+ +A+VLD V +AP +N I G++QI+G+ Sbjct: 410 QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 468 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 FT E A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M ++ Sbjct: 469 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGVFSFVVALILLMIYMCMM 528 Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 YG G++A+ ++FLN L +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE Sbjct: 529 YGFIPGMIANGALFLNFFFVLGVLSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 588 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 R + V +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + IL+S F Sbjct: 589 LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFF 648 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561 TA+ + R + + K+ ++ L FM + I++ + I Sbjct: 649 TAVFMTRIVYEHFMNKDKLLNLTFTTPVSRNL-MTNTRFDFMGTNKKSLIITVAIILVCI 707 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 GL+ IDF GG V PV+ +R + S G VR+ Sbjct: 708 GSFAMRGLSQSIDFTGGRNFKVQFENPVEPEQIRELISSKFGDANVSVIAIGTDKKTVRI 767 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKIS 662 A V ++ + E + Q +++ VGP I+ Sbjct: 768 STNYRIEDAGNDVDSQIEAYLYETLKPVLTQNITLATFIDRDNHTGGSIVSSQKVGPSIA 827 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715 ++ I V+++ IA+ +YI IRF+ +++G+I L D +G ++L F Sbjct: 828 DDIKTGAIYSVVLALIAIGLYILIRFRNIAYSIGSIVALSCDTIMIIGAYSLLWGIVPFS 887 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 +E + T + A+LT IGYS+NDKVV++DR+R+ LY R L + S+N TL R++ T Sbjct: 888 LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINT 946 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S++ I +L + + GG I SFA M G+V+ SS+FIA+PI + + Sbjct: 947 SLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 999 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 99/281 (35%), Gaps = 44/281 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ I F K K++ K + +++ E+ VL Sbjct: 119 VNSQDDIITLFVREYHKAAPNAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + A+E S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 A + F + M + Q D + Sbjct: 228 ANLEFWETYTAKEVLPAMQSADAKLRAVLAQETGADSTAVD 268 >gi|255531324|ref|YP_003091696.1| bifunctional preprotein translocase subunit SecD/SecF [Pedobacter heparinus DSM 2366] gi|255344308|gb|ACU03634.1| protein-export membrane protein SecD [Pedobacter heparinus DSM 2366] Length = 990 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 206/818 (25%), Positives = 360/818 (44%), Gaps = 59/818 (7%) Query: 70 LQMYSDELRSFLKKEGIGVFSMR--QIQNKITLSFADSRFKENIADKVTLFLQGVNSK-- 125 + +RS + G+ +M+ + N+I + + KE + + + + Sbjct: 177 IDRSFIIIRSRIDGFGVVSPNMQKQEGTNRILIEMPGVQDKERVHKLLQGSAELQFWQVY 236 Query: 126 -------------------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166 L T + L+ ++ Sbjct: 237 QNEEVYPVLENINKTLALTLKDTTTATGAAKDTTAKSGSKLAGLAKKADAKDSLSLKNNE 296 Query: 167 IRQRIDQIGISESTIQRLGSHRI------LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 + + + + + ++ ++D +++ + Sbjct: 297 AAKSNPLFAVLTPPTYQSENGQPALRPGPVVGWTAQKDTAKVNAFFKRPEIAAIIPQSYK 356 Query: 221 NSKKGFMFGVRFLRDSDGNQYL------VEDKVEISGIHLNGATANFDPKTHKPVVDISF 274 + S + ++ K ++ G ++ + + KP V + Sbjct: 357 FMWSAKPADLGVANTSKIFELYAIKVTSLDGKPDLGGEAISD-ARHDYDQKGKPEVTMYM 415 Query: 275 DEMGARRFFEVTR-----DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 GA ++ ++T N K +A+VLD V +AP + IP+G + I+GNFT+ Sbjct: 416 TGDGAAKWKKITAEASADANNKKAIAIVLDNTVYSAPTVQNEIPNGISSITGNFTVNDTQ 475 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 LA +L+AG LP IV E VG LG +I+ G + V V+I++FM + Y K G V Sbjct: 476 DLANILKAGKLPAPARIVGEFVVGPSLGEVAIHNGLLSFVLAFVVILIFMALYYNKAGWV 535 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +N+ + +L LGA LTLP IAGIVL IGL+VD+NIL+ ER+REE +S Sbjct: 536 ANLALVINLFFIMGILVSLGAVLTLPGIAGIVLVIGLSVDANILIFERVREELTLGKSTP 595 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 ++ GF A S+I DSN+T L+ V+L+ FG G V+GFA T+ + IL S+F A+ I R Sbjct: 596 AAIKEGFKHAMSSIIDSNVTVLVLGVILYVFGSGPVQGFATTLCIGILSSLFCAVLISRL 655 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + ++ K + IA F+ R IS + + F HG Sbjct: 656 IFDTLLDKKANITFG---NKYTIHAFKNIAFNFVGHRKLYYTISSIIIVLGFIFYFKHGG 712 Query: 570 -NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY---QP 625 N GIDFKGG V ++ + V++ L ++ + G N L Sbjct: 713 LNLGIDFKGGRTYIVHFDKGMHTEDVKAQLAAVFPESETIVKTAGADNELKITTTFHITD 772 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 D A V +K + + TI++ E VGP I+ +++ ++ S + M IYI Sbjct: 773 SDIQADKIVENALKAGLAKTGVNYTIESNEKVGPIIASDIVYSAYGAILFSCLVMFIYIV 832 Query: 686 IRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKV 738 +RF K + LGA+ L D+ L F+ + F +E +AA+LT++GY++ + V Sbjct: 833 VRFKKLNYGLGAVIALFHDVLLVLSFYTILDGVLPFSLEIGQDFIAAILTVMGYTMTETV 892 Query: 739 VVYDRMRKNMKLYTT----SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 VV+DR+R+ + LI+ ++N TL R++ TS+ F +L + ++GG+ I Sbjct: 893 VVFDRIREKLAESGKEDLHGKERETLINFALNSTLSRTILTSLTVFFVLLVIFIFGGASI 952 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 F + G ++ SS+ I+ PI+L + + + K+ + Sbjct: 953 RGFIFALLIGRIIGTYSSLCISTPIVLDLGEAKVKDKK 990 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 14/195 (7%) Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96 I LGLDL+GG ++ +E+ + V D +F K + Sbjct: 67 QFCKSKEIKLGLDLKGGMNVTMEISLGELVKSLASNTDDV--NFNKALSNAQQQLNAGGK 124 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 F + K + F N D K L + E+ LS+ Sbjct: 125 DFISLFVNEYEKLAPGKNLVDFFS------NQDNAKLLKPNASNNEVKSFLSKEAT---- 174 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI++S IIR RID G+ +Q+ ++RILI++PG QD R+ +LL +A++ F Sbjct: 175 -SAIDRSFIIIRSRIDGFGVVSPNMQKQEGTNRILIEMPGVQDKERVHKLLQGSAELQFW 233 Query: 216 KVLPNNSKKGFMFGV 230 +V N + + Sbjct: 234 QVYQNEEVYPVLENI 248 >gi|146300012|ref|YP_001194603.1| bifunctional preprotein translocase subunit SecD/SecF [Flavobacterium johnsoniae UW101] gi|57236803|gb|AAW49014.1| SecDF [Flavobacterium johnsoniae UW101] gi|146154430|gb|ABQ05284.1| SecDF [Flavobacterium johnsoniae UW101] Length = 991 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 187/826 (22%), Positives = 352/826 (42%), Gaps = 50/826 (6%) Query: 52 GGSHLVLE-VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQ--NKITLSFAD 104 GG + + + + LR + K G+ +++++ +I + Sbjct: 160 GGIDFQMTDAQAQKVIKRKVDESIESAYKVLRERIDKFGVTQPNIQKLGETGRILVELPG 219 Query: 105 SRFKENIADKVTLFLQGVNSKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162 ++ + I + Q + + L+ + + V Sbjct: 220 AKDVDRIKKLLGGKAQLEFWETFKIEEVGNFLVAANEALKKTEVKKTETKAVAKDSLNAL 279 Query: 163 SMEIIRQRIDQIGISES--TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 + + +D + + ++ +D + + + Sbjct: 280 LTDNSKDSLDAKKGNNPLFDKMIVQGGGPVLGYFATKDTAAINGYFKRPDIRILLGADQH 339 Query: 221 NSKKGFMFGVRFLRDSDGNQYLVE---------DKVEISGIHLNGATANFDPKTHKPVVD 271 N+K + VE + +SG + A FD V Sbjct: 340 NAKFVWSKPTTIKDAKAKEVEAVELYALKGNRDNVPAMSGGVVTDAKDTFDQMGKPAVSM 399 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAG 329 + R K ++ ++ + + I G+++I+G+F + Sbjct: 400 QMNSQGAKVWEELTGRAFSQKGYIAIVLDNIVYSAPGVTSGPIAGGRSEITGSFDVAETK 459 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 LA +L AG LP +I++ VG LG +I GT + V G +L+ ++M+ YGK G Sbjct: 460 DLANVLNAGKLPASADIIQSTVVGPSLGQAAIDAGTISSVLGFLLVCVWMVFYYGKAGWY 519 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ LN++ +++ G LTLP IAGIVL +G AVD+NI++ ER +EE R+ +S+ Sbjct: 520 ANLALLLNLLFLFGIMASFGFVLTLPGIAGIVLTLGTAVDANIIIYERAKEELREGKSLS 579 Query: 450 CSLDMG--FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 ++ + A +I D+N+T ++ +LF FG G ++GFA+T+ + I+ S+FT+I I Sbjct: 580 EAVAASYGWHGAMRSIIDANVTHVLTGAILFIFGTGPIKGFALTLLIGIVTSLFTSIFIA 639 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 R + I K + + +F I+ + + SI+ + + F + Sbjct: 640 RIFIDRNIAGKADLTFSTSITKNWFTNFHFDFIKVKKFTYIF--SSIVTVVSLTSIFFIN 697 Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP-- 625 GL+ G+DF GG V +P+D +VV L + + + + + +Y+ Sbjct: 698 GLDEGVDFVGGRTFQVKFEKPIDATVVSDELSAAFGTPVEAKILGDDDQLKITTKYKIKE 757 Query: 626 ----GDSVAQTRVLEMVKKKITEIVPLSTIQNTE----------IVGPKISRELIRKGIV 671 D ++ + ++K I + + VG IS ++ Sbjct: 758 DGVAIDEEVNQKLYKALQKYYPNTSYDKFINSFDGKKVGVLQASKVGASISEDIKTNSYW 817 Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVA 724 V+ + + +Y+ + F+ W ++LGAI + D+ LG ++L F +E + +A Sbjct: 818 AVLGAMAVIFLYLMVSFRKWQYSLGAIAAVAHDVIFVLGIYSLCYKFMPFHMEMDQHFIA 877 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT+IGYS+ND V+V+DR+R+ + SF D+++ SIN TL R++ TS+ I +L Sbjct: 878 AILTVIGYSMNDTVIVFDRVREFIIGNRKG-SFEDIVNASINTTLSRTLNTSLMMIIVLL 936 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 M ++GG I F M GI+V SS+FIA P+L+ K+ Sbjct: 937 TMFIFGGESIRGFIFAMLIGIIVGTYSSLFIATPVLVDTISSDEKH 982 Score = 60.1 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 101/250 (40%), Gaps = 42/250 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNR----------------- 43 M+N + + + + F+ ++ + N Sbjct: 1 MQNKGLIKFFAILFALVSIYQLSFTFVANNVKGEAKAFAGDNPDKELKYLDSIGKEKVFS 60 Query: 44 ---------------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 ++ GLDL GG +++L++ D + G + + + + + Sbjct: 61 LGFTDFTYNEVKNKQLNKGLDLEGGINVILQISVKDVLKGLANNSKNPVFN----KSLAD 116 Query: 89 FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148 + NK L+ F+ N V L + + ++ + T+ + + Sbjct: 117 ATANLEGNKTYLNKFFEAFEANSKGTVKLASPDIFANRSLQGDGGIDFQMTDAQ-----A 171 Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLG 207 Q I + + +IE + +++R+RID+ G+++ IQ+ + RIL++LPG +D R+++LLG Sbjct: 172 QKVIKRKVDESIESAYKVLRERIDKFGVTQPNIQKLGETGRILVELPGAKDVDRIKKLLG 231 Query: 208 TTAKMSFHKV 217 A++ F + Sbjct: 232 GKAQLEFWET 241 >gi|269127428|ref|YP_003300798.1| protein-export membrane protein SecD [Thermomonospora curvata DSM 43183] gi|268312386|gb|ACY98760.1| protein-export membrane protein SecD [Thermomonospora curvata DSM 43183] Length = 761 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 198/710 (27%), Positives = 349/710 (49%), Gaps = 23/710 (3%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +I + + + ++++E++R+R+D +G++ES+I R G RI+++LP QDP Sbjct: 37 GTQIVLETKDGPNVKANRESTDRALEVLRKRVDALGVAESSITRSGERRIIVELPDVQDP 96 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 R + +G TA+++ H V N+ K G + L D DG L++ + + + Sbjct: 97 KRAAEAVGRTAQLTAHPVRANDGKPDKKNGEQILPDEDGRPILLKKAALSGAQIRSASAS 156 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP------ 313 + + F G R + ++T + K + + + Sbjct: 157 FDQQNMQGWYITVDFRGDGGRIWQKITAEAACKSDPDDRRIAFVLDGKVISSPVVQEDVP 216 Query: 314 ------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 G QI+G F+ A LAA+++ GSLP+ + I+E+R VG LG ++I A Sbjct: 217 CNVGITGGSTQITGQFSAREAKELAALIQGGSLPVPVEIIEQRVVGPTLGEEAIQASWQA 276 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427 V G+VL LF+I +Y G +A ++ +++ A L +GATLTLP +AG VL IG+A Sbjct: 277 AVIGIVLTGLFIIWIYRLVGFLATLALAAYGVISYAALVAMGATLTLPGLAGFVLAIGMA 336 Query: 428 VDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 VD+N+LV ER REE + + +L +GF +A+S I DSNIT ++A +LFF G V Sbjct: 337 VDANVLVFERAREEYAAVPRRGMRPALVIGFQKAWSAIADSNITTVLAAGLLFFLAAGPV 396 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLIPDCIAIQ 541 RGF +T+ + +L S+ +A+ + R + + + + + + R D Sbjct: 397 RGFGVTLTIGVLASLVSALLVTRVLAEWAVSRRPIAKRPALTGLSKTGRVRDWLDRKQPD 456 Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601 MR + + +S L SI + GLN+G++F GG Q+ ++ +D++ R+ + Sbjct: 457 LMRRKTLWLTVSGLLVAGSIAGIVIQGLNFGVEFTGGRQVVYSTSQRMDINDARAAVADA 516 Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661 Q + + + ++ ++ + T + E++GP + Sbjct: 517 GFPRAVVQTAGTDGEDISIRTEKLTNAEVD----KLQQALEKAGGGTVTKERDELIGPSL 572 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721 EL +K ++ + ++ A LIY+ +RF++ F A+ + D+ G FA G + Sbjct: 573 GSELRKKALIALGVALAAQLIYLAVRFRFTFGAAAVLAMFHDVIVVTGVFAWLGKPIDGV 632 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 +AA+LT+IGYSVND VVV+DR+R+ + F + ++ +T+ R+V T M A Sbjct: 633 FLAALLTIIGYSVNDSVVVFDRIRELWRAAPEER-FAKIANRGALQTVPRTVNTGMGAIF 691 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + +A+ GG + FAI + GIVV S++F A P+ + A Sbjct: 692 ILAALALLGGDSLTDFAIALLLGIVVGTYSTVFTATPLAIVFQARSKTPA 741 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 59/451 (13%), Positives = 113/451 (25%), Gaps = 37/451 (8%) Query: 1 MRNNP-WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M W +L I + +AL LGLDLRGG+ +VLE Sbjct: 1 MSRPLMWRALLALAIIAGSIFVAL-----------------TQPAKLGLDLRGGTQIVLE 43 Query: 60 V-DEDDFVNGF--LQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKV 115 D + + LR + G+ S+ + +I + D + + A+ V Sbjct: 44 TKDGPNVKANRESTDRALEVLRKRVDALGVAESSITRSGERRIIVELPDVQDPKRAAEAV 103 Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 Q + + K +K +L + ++ S IR Sbjct: 104 GRTAQLTAHPVRANDGKP-----DKKNGEQILPDEDGRPILLKKAALSGAQIRSASASFD 158 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235 + Q + VL + + Sbjct: 159 QQNMQGWYITVDFRGDGGRIWQKITAEAACKSDPDDRRIAFVLDGKVISSPVVQEDVPCN 218 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM-----GARRFFEVTRDNI 290 + + S A + V+I + G + + Sbjct: 219 VGITGGSTQITGQFSAREAKELAALIQGGSLPVPVEIIEQRVVGPTLGEEAIQASWQAAV 278 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 + L + V A + A ++ A L + + + Sbjct: 279 IGIVLTGLFIIWIYRLVGFLATLALAAYGVISYAALVAMGATLTLPGLAGFVLAIGMAVD 338 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 +V+ + A + +L LL L A Sbjct: 339 ANVLVFERAREEYAAVPRRGMRPALVI-----GFQKAWSAIADSNITTVLAAGLLFFLAA 393 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 + +G+ ++ S +LV + E Sbjct: 394 GPVRGFGVTLTIGVLASLVSALLVTRVLAEW 424 >gi|323343526|ref|ZP_08083753.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella oralis ATCC 33269] gi|323095345|gb|EFZ37919.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella oralis ATCC 33269] Length = 1006 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 210/831 (25%), Positives = 379/831 (45%), Gaps = 69/831 (8%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122 V G + + +R+ + + G+ ++++ Q +I + R E + + Sbjct: 166 VQGAIDNSFNVVRTRIDQFGVVQPNIQKLEGQQGRIMVEMPGIREPERMRKLLQGSANLE 225 Query: 123 NS-----------------KLNVDPKKNLLVTTTEKEISIV---------------LSQN 150 +L + + Sbjct: 226 FWETYNAEEVIPYLQQLDTRLAAGETETDTTAAKSAADKVQTTQAKAATTTKAQPKFKLQ 285 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT- 209 + D + E S Q + ++ +D + + +L+ + Sbjct: 286 SDDDKTADIKENSAAQTAVLKKQHPLLSILQPTGAGSLSVVGYANVRDTAEVNKLIHSAV 345 Query: 210 --AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE-DKVEISGIHLNGATANFDPKTH 266 + L ++K+ + + + + + G + A F+ T Sbjct: 346 AKQILPPDLKLLWSAKQADGIKAKNFFELHALKVTTNTGRAPLEGDVVTDAKDQFNHLTG 405 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 P V ++ + GARR+ +T+ NIGK +A+VLDG V +AP +N I G++ I+G+FTIE Sbjct: 406 SPEVSMTMNSDGARRWAALTKANIGKAIAIVLDGVVYSAPRVNGEISGGESAITGHFTIE 465 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GK 385 LA L++G +P IV+E VG LG+ SI +G + + +L++++M+++Y Sbjct: 466 DTKDLANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGVISFIIAFILLMIYMVMMYDFI 525 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A+ ++ +N+ TL +L+ A LT+ IAG+VL +G AVD+N+L+ ER +EE R Sbjct: 526 PGMIANGALLINLFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERTKEELRTG 585 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 + + ++ G+ A+S I DSN+T+L+ ++L+ FG G +RGFA T + I+ S F+A+ Sbjct: 586 KGLRQAMAAGYGNAFSAILDSNVTSLLTGIILYVFGTGPIRGFATTWMIGIVCSFFSAVY 645 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + R + ++ + +++ L A +FM +++ I I Sbjct: 646 LTRLVYEHQLKKDRWMNLNFTTRFSRNL-MQDKAYRFMAMYKKTFAFAVVAVIVFIGSFI 704 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 GL IDF GG V +PV+ VR+ L + G N +R+ Sbjct: 705 VRGLAQSIDFTGGRNYVVQFEKPVEPEEVRTVLAKAFPESTTGALALGTDNKTIRISTNY 764 Query: 626 GDSVAQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISREL 665 + + V+ K+ +I +I ++ VGP +++++ Sbjct: 765 KIESNSPTIDDEVETKLYNALKADGLVSQKNVQDFKNPDIRQGGSIISSTKVGPSVAKDI 824 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG------IEF 718 IV VII+ +A+ +YI IRF+ F++G+ L LD +G F+L +E Sbjct: 825 TNGAIVSVIIALVAIFLYILIRFRNVAFSVGSTIALALDALTVIGLFSLLQGFVPFSLEI 884 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + T + A+LT+IGYS+NDKVVV+DR+R+N++L+ + L + SIN+TL R++ TS + Sbjct: 885 DQTFIGAILTVIGYSINDKVVVFDRIRENLRLHPK-QDIQTLFNDSINQTLSRTINTSFS 943 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 I +L + GG I FA M G++ SSIFIA+PI + + K Sbjct: 944 TLIVLLCILFLGGKSIQPFAFAMTMGVIFGTLSSIFIASPIAYLVMGRKIK 994 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 93/244 (38%), Gaps = 38/244 (15%) Query: 1 MRNNPWLVILYSMICCIGLL---IALPNFLPQSMLDRFPSAMPK---------------- 41 M+N ++++ ++ + + + S ++ + + Sbjct: 1 MQNKGIVIVIAVLLTLASIFYLSFSAATYYYDSQAEKLKDPVAQQDYKDAVKYLGIYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG +++LE+ D + +D +F+K Q Sbjct: 61 KCLETQIGLGLDLKGGMNVILEISVPDVIEMLADHKTDA--AFVKSMKEARAEEETSQKD 118 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 F ++ K ++ L + + + + + Sbjct: 119 FITLFVNAYHKNAPGHRLAEIFAT-----------QQLQGKVSPQSTDSEVEKVLRSEVQ 167 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++R RIDQ G+ + IQ+ RI++++PG ++P R+R+LL +A + F Sbjct: 168 GAIDNSFNVVRTRIDQFGVVQPNIQKLEGQQGRIMVEMPGIREPERMRKLLQGSANLEFW 227 Query: 216 KVLP 219 + Sbjct: 228 ETYN 231 >gi|298373633|ref|ZP_06983622.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroidetes oral taxon 274 str. F0058] gi|298274685|gb|EFI16237.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroidetes oral taxon 274 str. F0058] Length = 1009 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 199/863 (23%), Positives = 363/863 (42%), Gaps = 96/863 (11%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 D V + + L S + + G+ +++++ +I + + E + + Sbjct: 145 DEVKSAIDNSFNVLSSRIDRFGVIQPNIQRLGGEEGRILVELPGVKEPERVRKLLQGSAN 204 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVL--------------------------------- 147 + + ++ + I + Sbjct: 205 LEFWETYTAAELVGVIQQADAAIRDIQGGKVLPTDTAATAQTTTATADTTAMAQTTDASQ 264 Query: 148 --SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ---------RLGSHRILIQLPGE 196 + + + + ++ + D+ E+ + ++ + Sbjct: 265 KATDSLAESLKQSLASETGQAATDVADEKAYQEALKNNPLIAVLGGLQNGNTPVLGVVAV 324 Query: 197 QDPSRLRQL--------LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248 +D +R+ L V P K + Sbjct: 325 KDTARVMSYFRMPQISRLLPRDLKLSWTVKPQIEGKDTRDNSDRYGLIALKVTSRNGQAP 384 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308 +SG + A +FD T++ +V + + GA + +T+ NIG+ +A+ LD + + P Sbjct: 385 LSGNVITDARVDFDQTTNQTLVSMKMNSEGAAIWARLTKANIGRAIAISLDNYIYSYPAP 444 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 + I G+++ISG FT E A LA +L +G +P I++E VG LG +I G + Sbjct: 445 TEQITGGESRISGRFTPEEAKDLANVLNSGKMPAPARIIQEDVVGPSLGQTAINNGLISF 504 Query: 369 VAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427 L++I ++M++ YG GL+AD + N L +L+ A LTLP IAGIVL +G+A Sbjct: 505 AVALLIIFIYMMMYYGLIPGLIADLVLIANTFFMLGILASFSAVLTLPGIAGIVLTLGMA 564 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ ER REE +++ +++ GF A S I D IT L+ ++LF FG G+V+G Sbjct: 565 VDANVLIYERCREELALGKNLKKAVEEGFGNALSAILDGQITTLLIGIILFIFGTGSVKG 624 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547 FA T+ + I S+FTA+ R + ++ + +I F+ R Sbjct: 625 FATTLVIGIFTSLFTALFFSRMLFDTLLSRNREWNISFTTNLTKN-WFKGFHFDFIGKRK 683 Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607 G IS + + LF +GL GIDF GG + +P++ VR L G Sbjct: 684 IGYIISACLVVVIVVSLFVNGLKPGIDFSGGNSYVIRFEQPINADDVREKLSDAFEGYSL 743 Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLE------------------------------- 636 + GE N + + + Sbjct: 744 YVITMGEANQIRISTNFVDNKAEGDNEGKIETILYEKLKDYLNPAVTKEMFVHRYVNRGG 803 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALG 695 + E IQ ++ VGP I+ ++I++ +++S I + IYI IRF K+ +++G Sbjct: 804 NYELANLEQGENYGIQQSQNVGPTIASDMIKRAAWAILLSLIVIFIYILIRFKKYAYSVG 863 Query: 696 AITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 ++ +L D +G + L F ++ + + +AA+LT+IGYS+ND VV++DR+R+N+ Sbjct: 864 SVASLFHDAFFMVGVYTLLYKVMPFSLDIDQSFIAAILTIIGYSINDTVVIFDRVRENLT 923 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809 L+ ++ ++ ++N TL R+ TS + +L M ++GG VI F + G + Sbjct: 924 LFPKR-DMKEQMNNALNATLSRTFSTSFTVILVLLAMFIFGGEVIRGFMFALLMGSLSGV 982 Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832 S++FIAAP+ I + Sbjct: 983 YSTLFIAAPLAYDIQRKEKSKIK 1005 Score = 58.2 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 20/183 (10%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQNK 97 + I+LGLDL+GG + LE+ D + + + R L S Sbjct: 46 AREREINLGLDLKGGMDVTLEISVPDVLIYLSDHNNTPIFRQALDNAKKRNSS------- 98 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 F +E L + S L K+ + + ++ VL + Sbjct: 99 ---DFLTVFKQEFERIDPNARLSTIFSTL--ALKEKIRLDMKNDQVISVLRDE-----VK 148 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++ RID+ G+ + IQR RIL++LPG ++P R+R+LL +A + F Sbjct: 149 SAIDNSFNVLSSRIDRFGVIQPNIQRLGGEEGRILVELPGVKEPERVRKLLQGSANLEFW 208 Query: 216 KVL 218 + Sbjct: 209 ETY 211 >gi|293368709|ref|ZP_06615314.1| protein-export membrane protein SecD [Bacteroides ovatus SD CMC 3f] gi|292636174|gb|EFF54661.1| protein-export membrane protein SecD [Bacteroides ovatus SD CMC 3f] Length = 1007 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 219/833 (26%), Positives = 385/833 (46%), Gaps = 75/833 (9%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122 V ++ + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + + + + ++ VL+Q A++ + E + S Sbjct: 232 FWETYTAKEVLPAMQSADAKLRAVLAQETGADST--AVDSTKEAPLAEATPAKKNVSAAD 289 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 L + E + + + + L ++ + + + +D N+YL Sbjct: 290 SLAAALKGDATTTEDNSTANLAEIKKQYPLLAILQLNSSGQGPVIGYANYKDTADINKYL 349 Query: 243 V----------------------------------------EDKVEISGIHLNGATANFD 262 K + G + A FD Sbjct: 350 AMPEVKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 409 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + V ++ + GARR+ ++T+ NIG+ +A+VLD V +AP +N I G++QI+G+ Sbjct: 410 QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 468 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 FT E A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M ++ Sbjct: 469 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGVFSFVVALILLMIYMCMM 528 Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 YG G++A+ ++FLN L +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE Sbjct: 529 YGFIPGMIANGALFLNFFFVLGVLSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 588 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 R + V +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + IL+S F Sbjct: 589 LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFF 648 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561 TA+ + R + + K+ ++ L FM + I++ + I Sbjct: 649 TAVFMTRIVYEHFMNKDKLLNLTFTTPVSRNL-MTNTRFDFMGTNKKSLIITVAIILVCI 707 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 GL+ IDF GG V PV+ +R + S G VR+ Sbjct: 708 GSFAMRGLSQSIDFTGGRNFKVQFENPVEPEQIRELISSKFGDANVSVIAIGTDKKTVRI 767 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKIS 662 A V ++ + E + Q +++ VGP I+ Sbjct: 768 STNYRIEDAGNDVDSQIEAYLYETLKPVLTQNITLATFIDRDNHTGGSIVSSQKVGPSIA 827 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715 ++ I V+++ IA+ +YI IRF+ +++G+I L D +G ++L F Sbjct: 828 DDIKTGAIYSVVLALIAIGLYILIRFRNIAYSIGSIVALSCDTIMIIGAYSLLWGIVPFS 887 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 +E + T + A+LT IGYS+NDKVV++DR+R+ LY R L + S+N TL R++ T Sbjct: 888 LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINT 946 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S++ I +L + + GG I SFA M G+V+ SS+FIA+PI + + Sbjct: 947 SLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 999 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 99/281 (35%), Gaps = 44/281 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ I F K K++ K + +++ E+ VL Sbjct: 119 VNSQDDIITLFVREYHKAAPNAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + A+E S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 A + F + M + Q D + Sbjct: 228 ANLEFWETYTAKEVLPAMQSADAKLRAVLAQETGADSTAVD 268 >gi|189465266|ref|ZP_03014051.1| hypothetical protein BACINT_01612 [Bacteroides intestinalis DSM 17393] gi|189437540|gb|EDV06525.1| hypothetical protein BACINT_01612 [Bacteroides intestinalis DSM 17393] Length = 999 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 215/821 (26%), Positives = 376/821 (45%), Gaps = 61/821 (7%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122 V + + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 172 VKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231 Query: 123 NSKLNVDPK--------------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162 + ++ + ++ A++ Sbjct: 232 FWETYNAKDVAPYLQAADNKLRSILANEAPADSAAVDSTAAPVMAQATSTADSLAAALKG 291 Query: 163 SMEIIRQRIDQIGISESTIQRLGSHR----ILIQLPGEQDPSRLRQLLGT---TAKMSFH 215 + + QI + L + ++ +D + + + L A++ Sbjct: 292 ENKAQTVDLAQIKKEHPLLAVLQVNSSGQGPVVAYANYKDTAEINKYLSMREIQAELPKD 351 Query: 216 KVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274 L + + + + G + A +D V +S Sbjct: 352 LRLKWGVSAYEYDPKGQTFELYAIRSTERNGRAPLEGDVVVSAKDEYDQFGKPA-VSMSM 410 Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334 + G+RR+ ++T+ NIGK +A+VLDG V +AP +N I G +QI+G+FT E A LA + Sbjct: 411 NTDGSRRWAQLTKQNIGKSIAIVLDGYVYSAPNVNTEITGGNSQITGHFTPEQAKDLANV 470 Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFS 393 L++G +P IV+E VG LG SI G + + LVL++++M +YG G+VA+ + Sbjct: 471 LKSGKMPAPARIVQEDIVGPSLGQASINAGVFSFIVALVLLMVYMCTMYGFIPGMVANGA 530 Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453 + LN+ TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R + V +L Sbjct: 531 LVLNMFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRAGKGVKKALA 590 Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513 G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + ILIS FTA+ + R + + Sbjct: 591 DGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTAVFMTRLVYEY 650 Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 + K ++ + L + FM + I+ + + I LF GL+ I Sbjct: 651 FMNKDKWLNLTFSSKISKNL-MANVHFDFMGGNKKWLTITGVILVICIGSLFVRGLSQSI 709 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 DF GG V V+ VR + S G VR+ Sbjct: 710 DFTGGRNFKVQFENAVEPEQVRELISSKFGDANVSVIAIGTDKKTVRISTNYRIEEDGNN 769 Query: 634 VLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRELIRKGIVGVI 674 V ++ + E + Q +++ VGP I+ ++ + V+ Sbjct: 770 VDSEIEAYLYETLKPVLTQNITLETFIDRENHTGGSIVSSQKVGPSIADDIKTSAMWSVV 829 Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVL 727 ++ IA+ +YI IRF+ +++G++ L D LG ++L F +E + T + A+L Sbjct: 830 LALIAIGLYILIRFRNIAYSVGSVAALTSDTLMILGAYSLCWGWMPFSLEIDQTFIGAIL 889 Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787 T IGYS+NDKVV++DR+R+ LY + L + S+N TL R++ TS++ I +L + Sbjct: 890 TAIGYSINDKVVIFDRVREFFGLYPKR-DKKQLFNDSLNTTLARTINTSLSTLIVLLCIF 948 Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + GG I SFA M G+V+ SS+FIA+PI + + Sbjct: 949 ILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYMMLKNKK 989 Score = 75.9 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 50/291 (17%), Positives = 103/291 (35%), Gaps = 46/291 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ-------------------------SMLDRF 35 M+N ++ + ++ + + +F+ + + F Sbjct: 1 MQNKGFVKVFAILLTLVCVFYLSFSFVTRHYNNKAKEYAKGDLKLEQDYLDSLSNEKVWF 60 Query: 36 PSAMPKN----RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + K ISLGLDL+GG +++LEV D + +DE + + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKTDEAFNQALATAAKQA-I 119 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQN 150 + ITL V + + +++L+ L ++ S + Sbjct: 120 SSQDDVITL-------------FVREYHRIAPDARLSELFATQQLKDKVNQKTSDAEVEK 166 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208 + + A++ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL Sbjct: 167 VLRSEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQG 226 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 +A + F + ++ S D + Sbjct: 227 SANLEFWETYNAKDVAPYLQAADNKLRSILANEAPADSAAVDSTAAPVMAQ 277 >gi|332668118|ref|YP_004450906.1| protein-export membrane protein SecD [Haliscomenobacter hydrossis DSM 1100] gi|332336932|gb|AEE54033.1| protein-export membrane protein SecD [Haliscomenobacter hydrossis DSM 1100] Length = 1037 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 204/825 (24%), Positives = 350/825 (42%), Gaps = 66/825 (8%) Query: 64 DFVNGFLQMYSDE----LRSFLKKEGIGVFSMRQIQNK--ITLSFADSRFKENIADKVTL 117 + ++ L+ + K G+ ++ + I + + D + Sbjct: 186 GVLKQKADQTAELTFRLLKERIDKLGVTGPNVSLDNARALILVELPGIDNPQRARDFLGK 245 Query: 118 FLQGVNSKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 + + DP ++ + + + + + + +S I ++D +G Sbjct: 246 AARLEFWNIYRLSDPINPNASSSKQVIEGFIAANEALAKTMGTGKTRSDTIGIVKVDSLG 305 Query: 176 ISESTIQRLGS---------------------------HRILIQLPGEQDP--SRLRQLL 206 + + + D +R Sbjct: 306 NALAKNKWTWDSIVQRPADNPLLEVLQINTQGTAPALMGYAEKNRKAIIDTMLARPEAKA 365 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 ++F + + + ++G H+ A + D + Sbjct: 366 QFPRDLTFAWSKDPITDPTTKKPTNVYELYALKKEGNRSQAPLNGDHVIQAFEDSDQNSG 425 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNF 323 K VV + D GA+ + +T + LD V++ P +N+ I G +QISG+F Sbjct: 426 KIVVSLRMDGEGAKTWAAMTTKAAQDNNREIAIVLDDEVISCPGVNEPITGGSSQISGSF 485 Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383 +E A LA +L G LP + I++E +G LG+ +I KG +V + I+ FM+ Y Sbjct: 486 NLEEATDLANLLEVGKLPAETRIIQESVIGPSLGASNINKGFGTLVITFLSILAFMVAYY 545 Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 G+VA ++ +N+ L L ++ LG LTLP IAGIVL IG+AVD+N+++ ERIREE R Sbjct: 546 AGGGIVAILALIINIFLLLGAMASLGTVLTLPGIAGIVLTIGMAVDANVIIYERIREELR 605 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + ++ GF A S I D N+T I + L FG G ++GFAI + L I ++FT Sbjct: 606 SGLGLRDAIQAGFKHAASAIIDGNLTTFIVGIALAVFGLGPIKGFAIVLMLGIATTLFTG 665 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 I + R M+ + K + +M R IS +F + SI Sbjct: 666 ILVSRMMVEYWTEKKGRS--MSFSYPWSSHTLLNQNVDWMGIRKISYAISAVFVVISIIA 723 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 + G + G+DFKGG + + VD +R +L + + D + V Y Sbjct: 724 ILVRGFDLGVDFKGGYSYNIQFEKTVDAEALRQSLTAEFGRTPVVKVVDSDNTLNVVTSY 783 Query: 624 QPGDSVAQTRVLE----------------MVKKKITEIVPLSTIQNTEIVGPKISRELIR 667 D+ + + + + I ++ V P I+ ++ R Sbjct: 784 LIDDTADDAQDRATAKLFAGVNKLAGGNLEEENFKSPDGTGTHITSSGKVDPTIADDISR 843 Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF------GIEFNL 720 + + + +YI++RF + LG I LI D T +G FALF +E + Sbjct: 844 SSWKAGLFGLLGIFLYIFLRFSKAKYGLGGIIALIHDATIAIGAFALFHGILPFNMEIDQ 903 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 +AA+LTL+GYS+ND V+V+DR+R+ + + T + DLI+ +IN TL R++ TSM F Sbjct: 904 AFIAAILTLLGYSINDTVIVFDRIREYIHKFPT-MKKNDLINAAINSTLSRTIITSMTVF 962 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 ++VL + +GG+ I FA M G+V SSIFIA+PI+ + Sbjct: 963 LTVLILFFFGGTSIKGFAFAMMLGVVFGTYSSIFIASPIVADLTK 1007 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 4/177 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 ++GP + I KG ++I+ +++L ++ + + AI LI++I LG A Sbjct: 510 QESVIGPSLGASNINKGFGTLVITFLSILAFMVAYYA-GGGIVAILALIINIFLLLGAMA 568 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G L +A ++ IG +V+ V++Y+R+R+ ++ + + RD I Sbjct: 569 SLGTVLTLPGIAGIVLTIGMAVDANVIIYERIREELR---SGLGLRDAIQAGFKHAASAI 625 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + ++ FI + +AV+G I FAI + GI + I ++ ++ + + + + Sbjct: 626 IDGNLTTFIVGIALAVFGLGPIKGFAIVLMLGIATTLFTGILVSRMMVEYWTEKKGR 682 Score = 57.0 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 11/178 (6%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 + ++++GLDL+GG +VL+VD +DF+ +D F + R Q+ Sbjct: 85 LKGQQLAMGLDLKGGMSVVLQVDLEDFIRSLAANSADPESEFERALKKATQDQRTTQDNY 144 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 FA +++ N D K + + + I + Q Sbjct: 145 VTLFA------RAYREISGDKPLANLFSRNDALKEEIKSGDPNQKVIGVL----KQKADQ 194 Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHR-ILIQLPGEQDPSRLRQLLGTTAKMSFH 215 E + ++++RID++G++ + + IL++LPG +P R R LG A++ F Sbjct: 195 TAELTFRLLKERIDKLGVTGPNVSLDNARALILVELPGIDNPQRARDFLGKAARLEFW 252 >gi|319900797|ref|YP_004160525.1| protein translocase subunit secF;protein translocase subunit secD [Bacteroides helcogenes P 36-108] gi|319415828|gb|ADV42939.1| protein translocase subunit secF;protein translocase subunit secD [Bacteroides helcogenes P 36-108] Length = 1001 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 218/833 (26%), Positives = 375/833 (45%), Gaps = 67/833 (8%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIA 112 + + ++ D LR+ + + G+ +++ +++ +I + + E + Sbjct: 162 AQVEKVLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVR 221 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH--------AIEQSM 164 + + + + + ++ VLS A+ Q+ Sbjct: 222 KLLQGSANLEFWETYNAKDIAPYLQSADAKLRAVLSNEAPADSTVTDSTTVTTPAVAQTT 281 Query: 165 EIIRQRIDQIGISESTIQRL------------------GSHRILIQLPGEQDPSRLRQLL 206 + ++ +D + + + L Sbjct: 282 STADSLAAALKGESKAQTADLAQIKKEHPLLAMLQVNPSGQGPVVAYANYKDTAEINKYL 341 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFD 262 + N + + K + G + + Sbjct: 342 SMPEVRAEMPKDLNLKWGVSPYEYDPKAQTFELYAIKSTERNGKAPLEGDVVVN-AKDEY 400 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 KP V +S + GARR+ ++T+ NIGK +A+VLDG V +AP +NQ I G +QI+G+ Sbjct: 401 DHYGKPAVSMSMNTDGARRWAQLTKQNIGKSIAIVLDGYVYSAPNVNQEITGGNSQITGH 460 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 FT E A LA +L++G +P +IV+E VG LG SI G + V L+L++++M + Sbjct: 461 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCSM 520 Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 YG G+VA+ ++ LN+ TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE Sbjct: 521 YGFIPGMVANGALVLNLFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEE 580 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 R + V +L G++ A+S IFDSN+T++I ++LF FG G +RGFA T+ + ILIS F Sbjct: 581 LRAGKGVKKALSDGYANAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFF 640 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561 TA+ + R + K+ ++ + L + FM + I+ + + + Sbjct: 641 TAVFMTRLFYEHFMGKDKLLNLTFSSKISKNL-MANVHFDFMGRNKLWMTITGIAVVVCL 699 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 L T GL+ IDF GG V V+ VR + S G VR+ Sbjct: 700 GFLMTRGLSQSIDFTGGRNFKVQFENKVEPEQVRELISSKFGDANVSVIAIGTDGKTVRI 759 Query: 622 QYQPGDSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKIS 662 V ++ + E +I +++ VGP I+ Sbjct: 760 STNYRIVEEGNNVDSEIEAYLYDTLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIA 819 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715 ++ I V+++ IA+ IYI IRF+ +++G+++ L D LG +++ F Sbjct: 820 DDIKVSAIWSVVLALIAIGIYILIRFRNIAYSIGSVSALACDTIVILGAYSICWGWMPFS 879 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 +E + T + A+LT IGYS+NDKVV++DR+R+ LY F L + S+N TL R++ T Sbjct: 880 LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKRDKFL-LFNDSLNTTLARTINT 938 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S++ I +L + + GG I SFA M G+VV SS+F+A+PI + Sbjct: 939 SLSTLIVLLCIFILGGDSIRSFAFAMILGVVVGTLSSLFVASPIAYMFMKNKK 991 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 55/365 (15%), Positives = 115/365 (31%), Gaps = 44/365 (12%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N + I ++ + + +F+ + ++ Sbjct: 1 MQNKGLVRIFAILLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVYF 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDETFNQ--ALANAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ + F K ++ L ++ + + Sbjct: 119 TTSQDDVITLFVREYHKLAPGATLSELFAT-----------QQLKDKVNQKSTDAQVEKV 167 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + + + A++ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 168 LREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 A + F + ++ + + D + T + Sbjct: 228 ANLEFWETYNAKDIAPYLQSADAKLRAVLSNEAPADSTVTDSTTVTTPAVAQTTSTADSL 287 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 E A+ LA++ PV+ A A+I+ ++ Sbjct: 288 AAALKGESKAQTADLAQIKKEHPLLAMLQVNPSGQGPVVAYANYKDTAEINKYLSMPEVR 347 Query: 330 ILAAM 334 Sbjct: 348 AEMPK 352 >gi|255534790|ref|YP_003095161.1| bifunctional preprotein translocase subunit SecD/SecF [Flavobacteriaceae bacterium 3519-10] gi|255340986|gb|ACU07099.1| Protein-export membrane protein secD/ Protein-export membrane protein secF [Flavobacteriaceae bacterium 3519-10] Length = 971 Score = 340 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 190/809 (23%), Positives = 360/809 (44%), Gaps = 70/809 (8%) Query: 61 DEDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADK 114 + + ++ + +R+ + K G+ ++++ +I++ + + + Sbjct: 170 QVKNIIENRIELSTGTAYEVIRTRIDKMGVTQPNVQRVPRTGRISVEMPGVKDIDRVKKM 229 Query: 115 VTL-------FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 + +Q V L + N ++ I + + N + + + ++ + Sbjct: 230 LQTSAKLQFWEVQQVQEILPYFEQLNSVIGAKADSIGVPGNTNLVSLLQLNTLKSNGVAN 289 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 + D +++ L+ + K Sbjct: 290 VKLSDTAAVNKI----------------------LKSQTAKDLRPQNIKYTQFMWGYKPE 327 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 + + K + G + + VVD+ D G++ + +T Sbjct: 328 LSDPNNLVLYAVRGNINQKAPVDGAVES--ARVNYDDLGRIVVDMQMDSKGSKDWKTLTG 385 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 N+ KP+AV LD V TAP + IP+G+ QISG+F+ E A L +L AG LP IV Sbjct: 386 KNVNKPVAVTLDEVVYTAPNVVNEIPNGRTQISGSFSQEEAQDLVNVLGAGKLPAGAKIV 445 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 + VG LG++S+ G + + V+I+L+M+ YG G+ A +I +N+ + ++ Sbjct: 446 QAEVVGPSLGAESVDAGMYSFIIAFVIIILYMLFYYGGAGVYAVIAISINLFYLMGIMDS 505 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 + ATLTLP IAGIVL + +++D+N++V ER +EE +++ + + GF + S I D N Sbjct: 506 VDATLTLPGIAGIVLSMAMSIDANVIVYERTKEELFAGKNIREAYNEGFKFSLSAIIDGN 565 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 IT+L+ VVL+ FG G ++GFA+T+G+ I++SMFT + + R ++ + K S+ Sbjct: 566 ITSLLTAVVLYIFGTGPIQGFAVTLGIGIILSMFTCVLLTRVLIFSRLEKGKGLSVWTKF 625 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 I + F+ R + S + ++ + +FT G YG+DFKGG V Sbjct: 626 SKN---IFRNTWVDFIGKRKYAYIFSGIVTLICLASIFTQGFKYGVDFKGGRSYVVRFAN 682 Query: 588 PVDLSVVRSNLESLQIG-----DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE------ 636 PV +LE I + G N L D + + Sbjct: 683 PVVADQAAESLEKQFINSEGQVNAVDVKTYGSNNQLKITTDYRVDEESLEADQDVESKLF 742 Query: 637 -----------MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + + + ++ VGP ++ ++ G++ + ++ + +YI Sbjct: 743 AGLKQYLPADAKMSEFKDSGANNYGVISSVKVGPTVADDIKSGGVIAMFVALAGIFLYIL 802 Query: 686 IRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKV 738 RF +W F+ GAI +L+ D LG ++L F +E N +AA+LT++GYS+ND V Sbjct: 803 FRFKRWQFSTGAIASLVHDAIVILGVYSLLKNVMPFNMEINQDFIAAILTVLGYSINDTV 862 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 +++DR+R+ + S++ L + SI+ TLGR+ T+ F+ +L + ++GG + F Sbjct: 863 IIFDRIREYLGE-KKSLTLEGLFNDSISSTLGRTFNTAFMTFLVILAIFIFGGENLRGFM 921 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + G+ S+ FIA+ + + + Sbjct: 922 FALLIGVGFGTYSTWFIASAVSYDLLKKK 950 >gi|281355236|ref|ZP_06241730.1| protein-export membrane protein SecD [Victivallis vadensis ATCC BAA-548] gi|281318116|gb|EFB02136.1| protein-export membrane protein SecD [Victivallis vadensis ATCC BAA-548] Length = 849 Score = 340 bits (871), Expect = 7e-91, Method: Composition-based stats. Identities = 208/740 (28%), Positives = 366/740 (49%), Gaps = 36/740 (4%) Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 + ++ + + D + + + + + EQ++E +R+R++ Sbjct: 114 DLNGGVEFILELVPDDDLLGKFAKEGGAKDRAGMEKQMSAEFDRY-REQAIETLRRRLET 172 Query: 174 --IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS--------- 222 I SE T S + + + +L +L+ + K+SF V P + Sbjct: 173 QNIFESEITPYGSRSVSLKAPIVSRDEKDKLLKLIKMSCKLSFRLVHPQSEELLKDYDPA 232 Query: 223 ------KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 + G YLV + E+ G + + + + + F+ Sbjct: 233 DSAAFLPPPGYEVLSASGGDRGYHYLVAKRPEMDGRSVAR-AMPVRDQFGQTKISLEFNS 291 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GA RF EVT N+G+ LA+VLDG++ APVI AI G A+ISG F+ E A +A L Sbjct: 292 AGAERFGEVTGKNLGRQLAIVLDGKLYCAPVIQSAITGGSAEISGRFSNEEAKDIADALT 351 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 +GS P ++ + + LG+D++ G A +VL+ +FM V Y + G++A ++ + Sbjct: 352 SGSFPFRIKVTAVYDTAPSLGADNVRNGIIAGALAMVLLTVFMCVYYFRAGVIACLALAV 411 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 NV+L L ++ GAT+T+P IAG++L +G+AVD+N+L+ ERIREE +S+ ++D+G+ Sbjct: 412 NVVLILGAMAAFGATMTMPGIAGVILTLGMAVDANVLIFERIREELNGGKSLAAAIDLGY 471 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 +A+S + D N+T L+ ++L G G V+GFA+++ + ++ S+FTA+ + R + +++R Sbjct: 472 EKAFSAVLDGNLTTLLCALILMMLGSGPVKGFAVSLSIGLIASLFTAVCMTRLIFDYMLR 531 Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDF 575 + K++ + + A F+ R W +S L S+ +L G G+DF Sbjct: 532 FFHWKTLKMCH------VFTQPAFNFIGNRKWAFLLSGLLIAGSLAVLAFKGERMFGVDF 585 Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIG---DISFQNFDGEKNFLVRLQYQPGDSVAQT 632 GG ++ V + L + + N G+ L L Q Sbjct: 586 TGGTRISCSYAEAVSTGELEKVLRPIDPNVRLNYKSNNSAGDNRKLEILIRDRNRPAGQE 645 Query: 633 RVLEMVKKKITEIVPLSTIQ------NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 + ++ +++ Q + VG + E R ++++ + M +Y+ I Sbjct: 646 ESAYALSDRVIKLLNSEFPQLRLSDGSESTVGGLVGLETARASAWAIVLALLGMSVYVAI 705 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 R++ FA I L+ D+ LG F L G E +L VAA+LT+IGYS+ND +V++DR+R+ Sbjct: 706 RYEVSFAAAGILALVHDVIIALGIFILMGRELSLPVVAALLTIIGYSINDTIVIFDRIRE 765 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 + KL+ F ++I+ +IN TL R++ TS F+ V M +GG VI F + M GIV Sbjct: 766 DAKLFP-GKPFGEVINYAINRTLSRTILTSATTFLVVAVMFCFGGIVINDFMLVMMLGIV 824 Query: 807 VAASSSIFIAAPILLFIYDW 826 + SSIFIA+PI++ + Sbjct: 825 IGTYSSIFIASPIVMSWHRK 844 >gi|288926931|ref|ZP_06420829.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella buccae D17] gi|288336290|gb|EFC74673.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella buccae D17] Length = 1003 Score = 340 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 213/829 (25%), Positives = 377/829 (45%), Gaps = 65/829 (7%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVT------ 116 V + + +R+ + K G+ ++++ + +I + + E + + Sbjct: 167 VKAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIKEPERMRKLLQGSANLE 226 Query: 117 -------LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169 + +L+ + + + + Sbjct: 227 FWETYNAEEVAPYLQQLDQRVANGSHAEADTATADSAAQKQVAAAKQAEPKFKIDKKETD 286 Query: 170 RIDQIGISESTIQRLGSHRILIQ-------------LPGEQDPSRLRQLLGTTAKMSFHK 216 + + G++ + H +L + +D + + +++ + Sbjct: 287 KAEAAGMAAQQAEATKQHPLLARLQLTGGQSLSLVGYANVRDTAAINKIIYSAVAKQVLP 346 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDI 272 +++ L + + G + A FD PVV + Sbjct: 347 QDLRLMWGAKPADGLKVKNVYELYALKVTTSNGRAPLEGDVITNAKDEFDQFN-NPVVSM 405 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 S + GAR++ +T+ NIGK +A+VLDG V +AP +N I G +QISGNFTIE LA Sbjct: 406 SMNTEGARQWANMTKANIGKAIAIVLDGVVYSAPRVNGEIDGGNSQISGNFTIEDTKDLA 465 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVAD 391 L++G +P IV+E VG LG+ SI +G + V VL++ +M+ +Y G++A+ Sbjct: 466 NTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIISFVIAFVLLIFYMVAMYNFIPGMIAN 525 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ +NV TL +L+ A LT+ IAG+VL +G AVD+N+L+ ERI+EE R + + + Sbjct: 526 SALVVNVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRSGKGMKQA 585 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 +D G+S A+S I DSN+T+L+ ++L+ FG G ++GFA T + I+ S F+A+ + R + Sbjct: 586 IDAGYSNAFSAILDSNVTSLLTGIILYIFGTGPIQGFATTWMIGIVCSFFSAVYLTRLVY 645 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571 F +++ K ++ L +FM ++ + + F GL Sbjct: 646 EFKLKHDKWLNLKFWTGISKNL-MQGTNYKFMSMYKNTFTLACVAVAVFVISFFVRGLAQ 704 Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 IDF GG V +P VR L + + G N +R+ Sbjct: 705 SIDFTGGRNYVVAFEKPTQPEQVRDILTTAFPQATNSAISLGTDNKTIRISTNYKIESNS 764 Query: 632 TRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKGIV 671 V + + + +I +I ++ VGP +++++ R + Sbjct: 765 PTVDDEAETMLYTALKKAGLVSQKSVEDFKNPDIRQGGSIISSSKVGPSVAKDVTRGAFI 824 Query: 672 GVIISAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGFFALFG------IEFNLTAVA 724 V I+ +A+ +YI IRF+ F++GA L+LD +G F+L +E + T + Sbjct: 825 SVAIALLAIFVYILIRFRSKAFSIGATVALMLDALTVIGLFSLLQGLLPFSLEIDQTFIG 884 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETLGRSVYTSMAAFIS 782 AVLT+IGYS+NDKVVV+DR+R+N+KL+ + L + SIN+TL R++ TS++ I Sbjct: 885 AVLTVIGYSINDKVVVFDRIRENLKLHPKRAKEDIQGLFNDSINQTLARTINTSVSTLIV 944 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +L + GG I FA M G++ SSIFIA+PI + + +N Sbjct: 945 LLCILFLGGKSIQPFAFAMTLGVIFGTLSSIFIASPIAYLVMGKKIENR 993 Score = 74.7 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 91/253 (35%), Gaps = 37/253 (14%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41 M+N ++++ ++ + + + Sbjct: 1 MQNKGLVIVVAVLLTLASIFYLSFSAATSYYDSQAAKIKDPIAQQDYKDSVKYLGVYPYK 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG +++LE+ D V +D + E + Sbjct: 61 KCLETQIGLGLDLKGGMNVILEISVPDVVETLADHKTDVAFTKSMAEARAEEEKTANSDF 120 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 ITL F ++ K K+ L + S + + + Sbjct: 121 ITL-FVNAYHKNAPGHKLAEVFAT-----------QQLQGKVSPQSSDSEVEKALRAEVK 168 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++R RID+ G+ + IQ+ RI++++PG ++P R+R+LL +A + F Sbjct: 169 AAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIKEPERMRKLLQGSANLEFW 228 Query: 216 KVLPNNSKKGFMF 228 + ++ Sbjct: 229 ETYNAEEVAPYLQ 241 >gi|298386063|ref|ZP_06995620.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides sp. 1_1_14] gi|298261291|gb|EFI04158.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides sp. 1_1_14] Length = 1010 Score = 340 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 217/834 (26%), Positives = 388/834 (46%), Gaps = 74/834 (8%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122 V ++ + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + + + + ++ +LSQ + + + ++ Sbjct: 232 FWETYTAKEILPAMQSADSKLRAILSQETAADSTATNATADTIPAAKLAEATPAKKAVSV 291 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 L ++ + + + L ++ + + + +D N+YL Sbjct: 292 ADSLAATLKGDAKDEKAGANMEEIKKQYPLLAVLQLNSSGQGPVIGYANYKDTADINRYL 351 Query: 243 V----------------------------------------EDKVEISGIHLNGATANFD 262 K + G + A FD Sbjct: 352 SMPEIQSELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 411 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + V ++ + GARR+ ++T+ NIG+ +A+VLD V +AP +N I G++QI+G+ Sbjct: 412 QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 470 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 FT E A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M + Sbjct: 471 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSM 530 Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 YG G+VA+ ++FLN TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE Sbjct: 531 YGFIPGMVANCALFLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 590 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 R + V +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + IL+S F Sbjct: 591 LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFF 650 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561 TA+ + R + + K ++ L+ FM + I + I Sbjct: 651 TAVFMTRLVYEHFMNKDKWLNLTFTSKISRNLL-VNTRFDFMGTNKKSLIIVSAIILVCI 709 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS---------FQNFD 612 GL+ IDF GG V PV+ VR + D++ + Sbjct: 710 GSFGLRGLSQSIDFTGGRNFKVQFENPVEPEQVRELIADKFGEDVNVNVIAIGTDKKTVR 769 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV-----------GPKI 661 N+ + + DS ++ + E +K +T+ + L+T + + GP I Sbjct: 770 ISTNYRIADEGNNVDSEIESYLYETLKPLLTQNITLATFIDRDNHTGGSIVSSQKVGPSI 829 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------F 714 + ++ + V+++ IA+ +YI IRF+ +++G+I L D +G ++L F Sbjct: 830 ADDIKTGAVWSVVLALIAIGLYILIRFRNIAYSIGSIVALTCDTIMIIGAYSLLWGIVPF 889 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 +E + T + A+LT IGYS+NDKVV++DR+R+ LY R L + S+N TL R++ Sbjct: 890 SLEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTIN 948 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 TS++ I +L + + GG I SFA M G+V+ SS+FIA+PI + + Sbjct: 949 TSLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 1002 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 102/290 (35%), Gaps = 44/290 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVML 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + D +F K Sbjct: 61 WNWTLKDCREMEISLGLDLKGGMNVILEVSVPDVIRALADNKPD--ENFNKALNEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ I F K K++ K + +++ E+ VL Sbjct: 119 VNSQDDIITLFVREYQKTAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + A+E S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 A + F + M + +Q D + A Sbjct: 228 ANLEFWETYTAKEILPAMQSADSKLRAILSQETAADSTATNATADTIPAA 277 >gi|282880540|ref|ZP_06289247.1| protein-export membrane protein SecD [Prevotella timonensis CRIS 5C-B1] gi|281305643|gb|EFA97696.1| protein-export membrane protein SecD [Prevotella timonensis CRIS 5C-B1] Length = 1009 Score = 340 bits (870), Expect = 8e-91, Method: Composition-based stats. Identities = 215/837 (25%), Positives = 381/837 (45%), Gaps = 74/837 (8%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122 + + +R+ + + G+ ++++ + +I + R E + + Sbjct: 166 SQAAIDNSFNVVRTRIDQFGVVQPNIQKLEGEEGRIMVEMPGIREPERMRKLLQGSANLE 225 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ--SMEIIRQRIDQIGISEST 180 + + + + +++ S + + Q + + +++ + I E Sbjct: 226 FWETFNAEEIIPYLNQLDAQLAHGESVAKDTTAVDSTVAQPKAAQKVKKAQPKFQIKEEN 285 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAK--------------------MSFHKVLPN 220 + QL + L +L TT + + Sbjct: 286 QTKNVQTANDAQLAAAKKEHPLLAILSTTGQNALSCVGYASVRDTAEINRLIHSDIAKQI 345 Query: 221 NSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNGATANFDPKTHKPVV 270 + D + E + + G + A F+ + +P V Sbjct: 346 LPADLKLLWSAKPADGLQVKNYYELHALKITTTTGRAPLEGDVITDAADQFNHLSGQPEV 405 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 ++ + GARR+ +T+ NIG+ +A+VLDG V T+P IN I G++ I+G+FTIE Sbjct: 406 SMTMNTDGARRWSAITKANIGRAVAIVLDGLVYTSPRINGQIDGGQSSITGHFTIEDTKD 465 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389 LA L++G +P IV+E VG LG+ SI +G + VL++++MIV+Y G++ Sbjct: 466 LANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIISFALAFVLLMIYMIVMYNFIPGMI 525 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +NV TL +L+ A LT+ IAG+VL +G AVD+N+L+ ERI+EE R + + Sbjct: 526 ANCALIVNVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRAGKGMK 585 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 ++ G+S A+S IFDSN+T+ I V+L FG G +RGFA T + I S F+A+ + R Sbjct: 586 QAVSAGYSNAFSAIFDSNLTSAITGVILLVFGTGPIRGFATTWLIGIACSFFSAVFLTRL 645 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + + + K ++ + FM+ I + I I GL Sbjct: 646 VYEYKLNKDKWLNLKF-WTGISENMMQNTRYNFMKMFKTSGTIYAIAIIICIGSFVVRGL 704 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG-----------------DISFQNFD 612 + IDF GG V ++ + VR L + + F Sbjct: 705 SQSIDFTGGRNYVVTVDKATHVENVRGVLNNAFKNTVGKNAGELATTNVIAIGTDGKTFR 764 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKK------------ITEIVPLSTIQNTEIVGPK 660 N+ + D A+T + + K +I +I ++ VGP Sbjct: 765 VSTNYNLESNDPQMDDKAETILYNALTKAGMVKQANIEAFKNPDIREGGSIISSSKVGPS 824 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------ 713 I++++ I V+I+ I + +YI +RF+ F++G++ LI+D T +G F+L Sbjct: 825 IAKDITNNAIKSVVIALICIFLYILLRFRNIGFSIGSVAALIIDTTMVIGLFSLCYGWIG 884 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 F +E + T + A+LT+IGY +ND VVV+DR+R+N+KL+ + + SIN+TL R++ Sbjct: 885 FSLEIDQTFIGAILTVIGYDINDSVVVFDRIRENLKLHPK-QDIQKTFNDSINQTLARTI 943 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 TS++ I ++P+ + G I SFA M G+ V SSIF+A+PI + + KN Sbjct: 944 NTSVSTLIVLVPIFILGADSIRSFAFAMIVGVFVGTLSSIFLASPIAYLVLGRKIKN 1000 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 38/242 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPKN--------------- 42 M+N +++ ++ + + S + + + Sbjct: 1 MQNKGIVIVTAVLLTLASIFYLSFSAATRYYDSQAAKLKDPIAQQEYKDSVKYLGIYSYQ 60 Query: 43 -----RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG +++LE+ D + +D F+K Q+ Sbjct: 61 KCLETQIGLGLDLKGGMNVILEISVPDVIEMLADHKTDP--DFVKSMKEARAEEETSQSD 118 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 F + K ++ L + S + + + Sbjct: 119 FISLFIKAFKKNAPQRRLAEIFAT-----------QQLQGKVNPQSSDAEVEKALRKESQ 167 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++R RIDQ G+ + IQ+ RI++++PG ++P R+R+LL +A + F Sbjct: 168 AAIDNSFNVVRTRIDQFGVVQPNIQKLEGEEGRIMVEMPGIREPERMRKLLQGSANLEFW 227 Query: 216 KV 217 + Sbjct: 228 ET 229 >gi|29348244|ref|NP_811747.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides thetaiotaomicron VPI-5482] gi|253569390|ref|ZP_04846800.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. 1_1_6] gi|29340147|gb|AAO77941.1| protein-export membrane protein SecD/SecF [Bacteroides thetaiotaomicron VPI-5482] gi|251841409|gb|EES69490.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. 1_1_6] Length = 1010 Score = 339 bits (869), Expect = 9e-91, Method: Composition-based stats. Identities = 217/834 (26%), Positives = 388/834 (46%), Gaps = 74/834 (8%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122 V ++ + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + + + + ++ +LSQ + + + ++ Sbjct: 232 FWETYTAKEILPAMQSADSKLRAILSQETAADSTATNATADTIPAAKLAEATPAKKAVSV 291 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 L ++ + + + L ++ + + + +D N+YL Sbjct: 292 ADSLAATLKGDAKDEKAGANMEEIKKQYPLLAVLQLNSSGQGPVIGYANYKDTADINRYL 351 Query: 243 V----------------------------------------EDKVEISGIHLNGATANFD 262 K + G + A FD Sbjct: 352 SMPEIQSELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 411 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + V ++ + GARR+ ++T+ NIG+ +A+VLD V +AP +N I G++QI+G+ Sbjct: 412 QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 470 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 FT E A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M + Sbjct: 471 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSM 530 Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 YG G+VA+ ++FLN TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE Sbjct: 531 YGFIPGMVANCALFLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 590 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 R + V +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + IL+S F Sbjct: 591 LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFF 650 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561 TA+ + R + + K ++ L+ FM + I + I Sbjct: 651 TAVFMTRLVYEHFMNKDKWLNLTFTSKISRNLL-VNTRFDFMGTNKKSLIIVSAIILVCI 709 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS---------FQNFD 612 GL+ IDF GG V PV+ VR + D++ + Sbjct: 710 GSFALRGLSQSIDFTGGRNFKVQFENPVEPEQVRELIADKFGEDVNVNVIAIGTDKKTVR 769 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV-----------GPKI 661 N+ + + DS ++ + E +K +T+ + L+T + + GP I Sbjct: 770 ISTNYRIADEGNNVDSEIESYLYETLKPLLTQNITLATFIDRDNHTGGSIVSSQKVGPSI 829 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------F 714 + ++ + V+++ IA+ +YI IRF+ +++G+I L D +G ++L F Sbjct: 830 ADDIKTGAVWSVVLALIAIGLYILIRFRNIAYSIGSIVALTCDTIMIIGAYSLLWGIVPF 889 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 +E + T + A+LT IGYS+NDKVV++DR+R+ LY R L + S+N TL R++ Sbjct: 890 SLEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTIN 948 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 TS++ I +L + + GG I SFA M G+V+ SS+FIA+PI + + Sbjct: 949 TSLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 1002 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 102/290 (35%), Gaps = 44/290 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVML 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + D +F K Sbjct: 61 WNWTLKDCREMEISLGLDLKGGMNVILEVSVPDVIRALADNKPD--ENFNKALNEAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ I F K K++ K + +++ E+ VL Sbjct: 119 VNSQDDIITLFVREYQKTAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + A+E S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 A + F + M + +Q D + A Sbjct: 228 ANLEFWETYTAKEILPAMQSADSKLRAILSQETAADSTATNATADTIPAA 277 >gi|182434927|ref|YP_001822646.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463443|dbj|BAG17963.1| putative protein-export membrane protein SecD [Streptomyces griseus subsp. griseus NBRC 13350] Length = 791 Score = 339 bits (869), Expect = 9e-91, Method: Composition-based stats. Identities = 192/794 (24%), Positives = 332/794 (41%), Gaps = 74/794 (9%) Query: 45 SLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITL 100 LGLDL+GG+ +VL+ + + LR + G+ ++ + ++I + Sbjct: 29 RLGLDLQGGTRIVLQARDTATVEADRETTDRTLEVLRQRIDSLGVSEPTLTRSGEDRIIV 88 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 D + A+ + Q + + + + + Sbjct: 89 ELPDVQDPRQAAEVIGRTAQLTFHPVQGPAAEEPEKKPSGSDPTAEPGSPAEPGSTPDPD 148 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 ++ + R+ +G PSRL A F Sbjct: 149 RLTLPDEQGRVLDLG-----------------------PSRLSGAGVEDATAGF------ 179 Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280 E G + F + ++ + Sbjct: 180 ---------------------------EAQGGAGWSVSLEFRKDAGQEWKKLTGEAACHP 212 Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340 + R I V+ +V + +PSG QI+G+F+ + A LA +++ G+L Sbjct: 213 AGDDRRRVAIVLDQKVISSPQVDPSVGCGAGLPSGATQITGSFSADEARDLALLIKGGAL 272 Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 P+ + IVE+R VG LG+ +I A + G LF+ ++Y +G +A ++ ++ Sbjct: 273 PVPVEIVEQRTVGPTLGAAAIDASAQAALIGAAATALFITIVYRLFGALAAVALGAYGVI 332 Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSR 458 + A L LG TLTLP +AG VL IG+AVD+N+LV ER REE R +S+ +L GF + Sbjct: 333 SYAALVALGVTLTLPGLAGFVLAIGMAVDANVLVFERAREECADRPKRSLRSALTTGFQK 392 Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 A+S + DSN T LIA +LFF G G V+GF +T+ + ++ SMF+A+ I RA+ + Sbjct: 393 AWSAVADSNATTLIAAGLLFFLGSGPVKGFGVTLAIGVIASMFSALVIARALTEIAANSR 452 Query: 519 KMKSID----INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574 + I Q R + +S ++ + G++ G++ Sbjct: 453 FVSDYRNVNGIARPGAVRTWLTRKDPQIFRKPVRWLVVSAALVAVAVAGIVVRGVDLGVE 512 Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 F GG + +RPVD+ R L + GD Sbjct: 513 FTGGRLVEYSTSRPVDVETARDTLAAAGFGDAEVTTAGDGD-------LSVRTGKLDNDG 565 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 ++ + E +T E++GP + EL R ++ + ++ L Y+ +RF+W FA+ Sbjct: 566 EHALRAALAEEGGETTKVRDELIGPSLGDELRRNALIALGVAVAVQLAYLAVRFRWTFAV 625 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 ++ ++ D+ +G FA G + +AA+LT+IGYSVND VVV+DR+R+ + Sbjct: 626 SSVAAMVHDVILVVGAFAWLGRPVDGIFLAALLTVIGYSVNDSVVVFDRVRE-LWGANRR 684 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 + +++ +T+ R+V T M A + +AV GG + FA+ + GIVV SS+F Sbjct: 685 TPLDTIARRAVLQTVPRTVNTGMGALFILAALAVLGGDSLADFALALLIGIVVGTWSSVF 744 Query: 815 IAAPILLFIYDWRA 828 A P L + Sbjct: 745 TAVPGALLLERNAK 758 >gi|319640220|ref|ZP_07994946.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 3_1_40A] gi|317388207|gb|EFV69060.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 3_1_40A] Length = 995 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 209/826 (25%), Positives = 373/826 (45%), Gaps = 65/826 (7%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ ++ +I + + E + + Sbjct: 166 EEVKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSAN 225 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI---- 176 + + +++ + + +L+ + ++ + + Sbjct: 226 LEFWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVATDTVAVAQASAISAADSLAA 285 Query: 177 -------SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN--------- 220 S S + + +P+ ++G +V Sbjct: 286 ALKGETASNSAAMEQMKKEHPLASVLQLNPNGYGAVVGYADYKDTAQVNQYLAMKEVKEM 345 Query: 221 ----------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 F R + + G + + + +KP V Sbjct: 346 LPKDLRLKWGVKAADFDKQGRIFELYAIKSTERNGRAPLEGDVITD-AKDEYDQFNKPCV 404 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 +S + GARR+ +T++N+GK +A+VLDG V +AP +N I G +QI+GNFT E Sbjct: 405 SMSMNTDGARRWAVLTKNNVGKAIAIVLDGYVYSAPNVNGEITGGHSQITGNFTPEVTKD 464 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLV 389 LA +L++G +P IV+E VG LG +SI +G + V L+L++++M +YG G+V Sbjct: 465 LANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMV 524 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +N TL +L+ A LT+ IAG+VL +G+AVD+N+L+ ER +EE R ++V Sbjct: 525 ANCALVVNFFFTLGILTSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKTVK 584 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 +L G+S A+S IFDSN+T++I ++LF+FG G +RGFA T+ + IL S FTA+ + R Sbjct: 585 AALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRI 644 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + + K ++ L + FM + + I F GL Sbjct: 645 VYEHFMNKDKWLNLTFTTGISKNL-MQNVNYNFMGMMKRSFTVFGAIIVICIISFFIRGL 703 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 IDF GG V + V+ VR L+ D G +R+ + Sbjct: 704 AQSIDFTGGRNFVVQFEQQVEPETVRDLLKKKITEDNVQAIALGTDKKTIRITTNYRINE 763 Query: 630 AQTRVLEMVKKKITEIVPLST---------------------IQNTEIVGPKISRELIRK 668 + +++ + + + I +++ VGP I+ ++ Sbjct: 764 DSPTIDSEIEEFLYQSLKDGNLLGEGTTLEIFIDRDNRVGGSIISSQKVGPSIADDIKTS 823 Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721 + V+ + +A+ +YI +RF+ +++GA L +D +G ++L F +E + T Sbjct: 824 AVWSVLFALVAIGLYILLRFRNVAYSVGATVALAVDTILIIGAYSLCYGWVPFSLEIDQT 883 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 + A+LT IGYS+NDKVV++DR+R+ LY + L + S+N TL R++ TS++ I Sbjct: 884 FIGAILTAIGYSINDKVVIFDRIREFFGLYPKR-NRMQLFNDSLNTTLARTINTSLSTLI 942 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 +L + V GG I SFA M G+V+ SSIFIAAPI + Sbjct: 943 VLLCIFVLGGDSIRSFAFAMILGVVIGTLSSIFIAAPIAYLTMGNK 988 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 83/176 (47%), Gaps = 3/176 (1%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 +IVGP + +E I +GI+ +++ I ++IY+ + + A L+++ TLG Sbjct: 482 QEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMVANCALVVNFFFTLGILT 541 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F ++ +A ++ +G +V+ V++Y+R ++ ++ + + + + Sbjct: 542 SFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKTVKAALADGYSNAFSAI 598 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++ + I+ + + +G I FA + GI+ + +++F+ + + Sbjct: 599 FDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRIVYEHFMNKDK 654 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 57/361 (15%), Positives = 116/361 (32%), Gaps = 40/361 (11%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAM------------------ 39 M+N ++ + ++ + + +F+ + + P Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRYHMDKAAQDPKGEAHYLDSMQNEKVYLGSYT 60 Query: 40 ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95 + I LGLDL+GG +++LEV D V +DE + K Q Sbjct: 61 LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKTDEAFN--KAVAEASKQSITSQ 118 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + F K+ K+ K + +++ E+ VL + Sbjct: 119 DDFITLFVKEYKKQAPNGKLAELFAT------QQLKDKVTTRSSDSEVEKVLREE----- 167 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 + AI+ S ++R RID+ G+++ IQ RI+++LPG ++P R+R+LL +A + Sbjct: 168 VKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSANLE 227 Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273 F + ++ V + + Sbjct: 228 FWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVATDTVAVAQASAISAADSLAAAL 287 Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333 E + +V+ V+ A AQ++ ++ + Sbjct: 288 KGETASNSAAMEQMKKEHPLASVLQLNPNGYGAVVGYADYKDTAQVNQYLAMKEVKEMLP 347 Query: 334 M 334 Sbjct: 348 K 348 >gi|150003562|ref|YP_001298306.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides vulgatus ATCC 8482] gi|254881210|ref|ZP_05253920.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. 4_3_47FAA] gi|294777629|ref|ZP_06743080.1| protein-export membrane protein SecD [Bacteroides vulgatus PC510] gi|149931986|gb|ABR38684.1| protein-export membrane protein SecD/SecF [Bacteroides vulgatus ATCC 8482] gi|254834003|gb|EET14312.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. 4_3_47FAA] gi|294448697|gb|EFG17246.1| protein-export membrane protein SecD [Bacteroides vulgatus PC510] Length = 995 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 209/826 (25%), Positives = 373/826 (45%), Gaps = 65/826 (7%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ ++ +I + + E + + Sbjct: 166 EEVKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSAN 225 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI---- 176 + + +++ + + +L+ + ++ + + Sbjct: 226 LEFWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVATDTVAVAQASAISAADSLAA 285 Query: 177 -------SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN--------- 220 S S + + +P+ ++G +V Sbjct: 286 ALKGETASNSAAMEQMKKEHPLASVLQLNPNGYGSVVGYADYKDTAQVNQYLAMKEVKEM 345 Query: 221 ----------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 F R + + G + + + +KP V Sbjct: 346 LPKDLRLKWGVKAADFDKQGRIFELYAIKSTERNGRAPLEGDVITD-AKDEYDQFNKPCV 404 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 +S + GARR+ +T++N+GK +A+VLDG V +AP +N I G +QI+GNFT E Sbjct: 405 SMSMNTDGARRWAVLTKNNVGKAIAIVLDGYVYSAPNVNGEITGGHSQITGNFTPEVTKD 464 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLV 389 LA +L++G +P IV+E VG LG +SI +G + V L+L++++M +YG G+V Sbjct: 465 LANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMV 524 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +N TL +L+ A LT+ IAG+VL +G+AVD+N+L+ ER +EE R ++V Sbjct: 525 ANCALVVNFFFTLGILTSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKTVK 584 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 +L G+S A+S IFDSN+T++I ++LF+FG G +RGFA T+ + IL S FTA+ + R Sbjct: 585 AALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRI 644 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + + K ++ L + FM + + I F GL Sbjct: 645 VYEHFMNKDKWLNLTFTTGISKNL-MQNVNYNFMGMMKRSFTVFGAIIVICIISFFIRGL 703 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 IDF GG V + V+ VR L+ D G +R+ + Sbjct: 704 AQSIDFTGGRNFVVQFEQQVEPETVRDLLKKKITEDNVQAIALGTDKKTIRITTNYRINE 763 Query: 630 AQTRVLEMVKKKITEIVPLST---------------------IQNTEIVGPKISRELIRK 668 + +++ + + + I +++ VGP I+ ++ Sbjct: 764 DSPTIDSEIEEFLYQSLKDGNLLGEGTTLEIFIDRDNRVGGSIISSQKVGPSIADDIKTS 823 Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721 + V+ + +A+ +YI +RF+ +++GA L +D +G ++L F +E + T Sbjct: 824 AVWSVLFALVAIGLYILLRFRNVAYSVGATVALAVDTILIIGAYSLCYGWVPFSLEIDQT 883 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 + A+LT IGYS+NDKVV++DR+R+ LY + L + S+N TL R++ TS++ I Sbjct: 884 FIGAILTAIGYSINDKVVIFDRIREFFGLYPKR-NRMQLFNDSLNTTLARTINTSLSTLI 942 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 +L + V GG I SFA M G+V+ SSIFIAAPI + Sbjct: 943 VLLCIFVLGGDSIRSFAFAMILGVVIGTLSSIFIAAPIAYLTMGNK 988 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 83/176 (47%), Gaps = 3/176 (1%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 +IVGP + +E I +GI+ +++ I ++IY+ + + A L+++ TLG Sbjct: 482 QEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMVANCALVVNFFFTLGILT 541 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F ++ +A ++ +G +V+ V++Y+R ++ ++ + + + + Sbjct: 542 SFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKTVKAALADGYSNAFSAI 598 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++ + I+ + + +G I FA + GI+ + +++F+ + + Sbjct: 599 FDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRIVYEHFMNKDK 654 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 57/361 (15%), Positives = 116/361 (32%), Gaps = 40/361 (11%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAM------------------ 39 M+N ++ + ++ + + +F+ + + P Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRYHMDKAAQDPKGEAHYLDSMQNEKVYLGSYT 60 Query: 40 ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95 + I LGLDL+GG +++LEV D V +DE + K Q Sbjct: 61 LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKTDEAFN--KAVAEASKQSITSQ 118 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + F K+ K+ K + +++ E+ VL + Sbjct: 119 DDFITLFVKEYKKQAPNGKLAELFAT------QQLKDKVTTRSSDSEVEKVLREE----- 167 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 + AI+ S ++R RID+ G+++ IQ RI+++LPG ++P R+R+LL +A + Sbjct: 168 VKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSANLE 227 Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273 F + ++ V + + Sbjct: 228 FWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVATDTVAVAQASAISAADSLAAAL 287 Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333 E + +V+ V+ A AQ++ ++ + Sbjct: 288 KGETASNSAAMEQMKKEHPLASVLQLNPNGYGSVVGYADYKDTAQVNQYLAMKEVKEMLP 347 Query: 334 M 334 Sbjct: 348 K 348 >gi|224023544|ref|ZP_03641910.1| hypothetical protein BACCOPRO_00246 [Bacteroides coprophilus DSM 18228] gi|224016766|gb|EEF74778.1| hypothetical protein BACCOPRO_00246 [Bacteroides coprophilus DSM 18228] Length = 988 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 208/827 (25%), Positives = 373/827 (45%), Gaps = 56/827 (6%) Query: 58 LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK---ITLSFADSRFKENIADK 114 +E + V ++ + LR+ + + G+ +++ ++ + I + + E + Sbjct: 160 VEAVLREEVKAAVENSYNVLRTRIDRFGVAQPNIQTLEGRMGRIMVELPGIKEPERVRKL 219 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 + + ++ + + +L+ + E++ + + Sbjct: 220 LQGSANLEFWETYEAKDITPVLASADSRARAILASETVSSDSVAVKEEAAVSAKDSLAAA 279 Query: 175 GISESTIQRLGSHRILIQLPGEQDPSR--------LRQLLGTTAK---MSFHKVLPNNSK 223 E+ + +R L ++ T ++ +V + Sbjct: 280 LKGEAPAEAGEQNRKNYPLLSVLQLNQSGVGAIVGYADYKDTADINRILNMKEVKEVLPR 339 Query: 224 KGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNGATANFDPKTHKPVVDIS 273 + D D + E + + G + A ++D +P V ++ Sbjct: 340 DLKLMWGVRASDMDKTGRIFELYAIKSTQRNGRAPLEGDVITDARDSYDQYN-RPCVTMA 398 Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333 + GARR+ ++T+ N G+ +A+VLDG V +AP N I G ++I+G+FT E LA Sbjct: 399 MNTEGARRWAQLTKQNTGREIAIVLDGYVYSAPRSNGEIAGGNSEITGSFTPEQTKDLAN 458 Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADF 392 +L++G +P IV+E VG LG +SI +G + + LV+++ +M V+YG G+VA+ Sbjct: 459 VLKSGKMPAPARIVQEDIVGPSLGQESINQGIVSFIVALVVLMAYMCVMYGFIPGMVANA 518 Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452 ++F+N TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE + + +L Sbjct: 519 ALFINFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELKAGKGTRQAL 578 Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 G+ A+S IFDSN+T++I ++LF FG G +RGFA T+ + IL S F+A+ + R + Sbjct: 579 SEGYVNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILCSFFSAVFLTRLVYE 638 Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG 572 + K ++ L + F+ + + I I F GL Sbjct: 639 HFMNKDKWMNLTFTTGISKNL-MQNVHYNFIGSTKRSFTVWGTIIIICIVSFFVRGLAQS 697 Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 IDF GG V + V VR L+ G VR+ Sbjct: 698 IDFTGGRNFVVQFEQKVAPETVRELLQPKVGDANVQAIALGTDGRTVRVTTNYRIEEDSP 757 Query: 633 RVLEMVKKKITEIVPLST---------------------IQNTEIVGPKISRELIRKGIV 671 + +++ + + + I +++ VGP I+ ++ I Sbjct: 758 TIDAEIEEFLYQALKDGNLLGEGTTLEIFIDRDNRVGGSIISSQKVGPSIADDIKTSAIW 817 Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVA 724 V+++ IA+ +YI IRF F++GA L +D +G ++L F +E + T + Sbjct: 818 SVVLALIAIGLYILIRFSNIAFSIGATVALTVDTLLIIGAYSLCHGWMPFSLEIDQTFIG 877 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT IGYS+NDKVV++DR+R+ + LY L + S+N TL R++ TS++ I +L Sbjct: 878 AILTAIGYSINDKVVIFDRVREFLGLYPKR-DRVQLFNDSLNTTLCRTINTSLSTLIVLL 936 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + GG I SFA M G V+ SS+FIAAP+ + Sbjct: 937 SIFILGGDSIRSFAFAMILGAVIGTLSSLFIAAPVAYLTMGNKMPKG 983 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 98/257 (38%), Gaps = 40/257 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPS-----------------AM---- 39 M+N ++ + ++ +F+ + +++ + Sbjct: 1 MQNKGFVKVFAVLLTLACAFYLSFSFVTRYQMNKAAEDPRGAAHYLDSMQNQKVWLGVYT 60 Query: 40 ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95 + I LGLDL+GG +++LEV D V DE + E + Sbjct: 61 LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKTLADNKPDEAFNKAVAE-AAKQQVTSQD 119 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + ITL + K+ + K + +T+ E+ VL + Sbjct: 120 DFITLFIRE-------YKKLAPEGKLAELFATQQLKDKVTTRSTDAEVEAVLREE----- 167 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 + A+E S ++R RID+ G+++ IQ RI+++LPG ++P R+R+LL +A + Sbjct: 168 VKAAVENSYNVLRTRIDRFGVAQPNIQTLEGRMGRIMVELPGIKEPERVRKLLQGSANLE 227 Query: 214 FHKVLPNNSKKGFMFGV 230 F + + Sbjct: 228 FWETYEAKDITPVLASA 244 >gi|300772654|ref|ZP_07082524.1| protein-export membrane protein SecD/SecF [Sphingobacterium spiritivorum ATCC 33861] gi|300760957|gb|EFK57783.1| protein-export membrane protein SecD/SecF [Sphingobacterium spiritivorum ATCC 33861] Length = 993 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 215/810 (26%), Positives = 374/810 (46%), Gaps = 47/810 (5%) Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVNS 124 + +Q LR+ + K G+ +++ Q N+I + ++ + + + Sbjct: 176 DNAIQNSYKVLRTRIDKFGVASPNIQIQQGTNRILIELPGVNDEQRVRKLLQGSAKLEFY 235 Query: 125 KLNVDPK--KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE---- 178 + + + + L ++ + + + ++ G S+ Sbjct: 236 ETHSNFQVYPLLENINKTLAATLKAQKTSSADTTKADTTKKENLLANLGAGKGKSDSAAV 295 Query: 179 ---------------------STIQRLGSHRILIQLPGEQDPSRLRQLLGTTA--KMSFH 215 + Q ++ + +D +++ LL + Sbjct: 296 NAKLGEDNPLFAVLTPSVAMGANNQMQLVPGPMVGIAQLKDTAKVNALLAKPEIKSIIPA 355 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 + + K L +++ ++G + A + P+T++PVV + + Sbjct: 356 NLKLLWAVKPEQNSPNALSLYAIRPSGIDNGAVLTGDVITDAKNDIAPQTNQPVVSMQMN 415 Query: 276 EMGARRFFEVTRDNIGK--PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333 GAR + ++T +A+VLD V +AP +N+ IP+G +QISG+FT + LA Sbjct: 416 NAGAREWRKITAKAAQNKEAIAIVLDNVVYSAPNVNEEIPNGSSQISGSFTTDDTKDLAN 475 Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393 +L+AG LP IVEE VG LG +I G + + V++++FM+ Y + G A+ + Sbjct: 476 VLKAGRLPTTAKIVEEAIVGPSLGQAAIDAGVNSAIIAFVVVLIFMVFYYNRAGWAANIA 535 Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453 + +NV L +L+ L A LTLP IAGIVL +G AVD+N+L+ ERIREE +S+ ++ Sbjct: 536 VIVNVFFLLGVLASLNAVLTLPGIAGIVLTMGTAVDANVLIYERIREELGLGKSMRQAIA 595 Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513 G+ A +I DS IT + +VLFFFG G + GFA TM + I+ S+FTAI I R + F Sbjct: 596 DGYKHAMPSILDSQITTFLVGIVLFFFGSGPILGFATTMMVGIVTSLFTAIFISRLIFEF 655 Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 ++ S+ + F++ R +SI+ +I + +FT G G+ Sbjct: 656 MLDKDMKISVSYPWSANTLR---NANFNFIKNRKKFYIVSIIAAIICLGSIFTKGFTLGV 712 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 DF+GG V ++ V+L VR +L+ + + F E V Y+ ++ Sbjct: 713 DFQGGRTYTVRFDKAVNLENVRQSLDEVFQKTTEVKTFGSENQVRVTTTYKIDETSDDAD 772 Query: 634 VLEMVKKKI---TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689 + K + I + + VGP I+ ++ + I S I + YI IRF+ Sbjct: 773 KEVLDKLNLGLSKIEGNKHEILSQQKVGPSIANDIKSRATYSAIFSIIIIATYILIRFRK 832 Query: 690 WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 W ++ GA I D LG F+L F ++ + VAA+LT+I YSVND VVV+DR Sbjct: 833 WQYSAGAAIATIHDAVILLGLFSLLDGIVPFSLDIDQHFVAAILTVIAYSVNDTVVVFDR 892 Query: 744 MRKNMKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 +R+ + + + D+++ +IN TL R++ TS+ + + ++GG VI F+ + Sbjct: 893 LREYVNKPNSHNEKMSDIVNHAINTTLSRTIITSLTIIFVLAVLFIFGGEVIRGFSFAIL 952 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 GIVV SSIF+AAP + R + Sbjct: 953 IGIVVGTYSSIFLAAPSVYDFRKGRHMAEK 982 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 14/190 (7%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 N ++LGLDL+GG ++ +E+ D+ + D F G V R + Sbjct: 74 NELALGLDLKGGMNVTMEISLDELITNLANNPKD--EKFNTSLGNAVKKSRSSNKSLVDL 131 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 F + + + F +L+ T+ + Q D AI+ Sbjct: 132 FIEDYKSSGASTPLASFFA-------TQSNSSLIKATSSDKEVANFLQKEADN----AIQ 180 Query: 162 QSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 S +++R RID+ G++ IQ ++RILI+LPG D R+R+LL +AK+ F++ N Sbjct: 181 NSYKVLRTRIDKFGVASPNIQIQQGTNRILIELPGVNDEQRVRKLLQGSAKLEFYETHSN 240 Query: 221 NSKKGFMFGV 230 + + Sbjct: 241 FQVYPLLENI 250 >gi|326775444|ref|ZP_08234709.1| protein-export membrane protein SecD [Streptomyces cf. griseus XylebKG-1] gi|326655777|gb|EGE40623.1| protein-export membrane protein SecD [Streptomyces cf. griseus XylebKG-1] Length = 791 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 192/794 (24%), Positives = 333/794 (41%), Gaps = 74/794 (9%) Query: 45 SLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITL 100 LGLDL+GG+ +VL+ + + LR + G+ ++ + ++I + Sbjct: 29 RLGLDLQGGTRIVLQARDTATVEADRETTDRTLEVLRQRIDSLGVSEPTLTRSGEDRIIV 88 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 D + A+ + Q + + + + + + Sbjct: 89 ELPDVQDPRQAAEVIGRTAQLTFHPVQGPAAEEPEKKPSGSDPTAEPGSPAEPGSTPDSD 148 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 ++ + R+ +G PSRL A F Sbjct: 149 RLTLPDEQGRVLDLG-----------------------PSRLSGAGVEDATAGF------ 179 Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280 E G + F + ++ + Sbjct: 180 ---------------------------EAQGGAGWSVSLEFRKDAGQEWKKLTGEAACHP 212 Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340 + R I V+ +V + +PSG QI+G+F+ + A LA +++ G+L Sbjct: 213 AGDDRRRVAIVLDQKVISSPQVDPSVGCGAGLPSGATQITGSFSADEARDLALLIKGGAL 272 Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 P+ + IVE+R VG LG+ +I A + G LF+ ++Y +G +A ++ ++ Sbjct: 273 PVPVEIVEQRTVGPTLGAAAIDASAQAALIGAAATALFITIVYRLFGALAAVALGAYGVI 332 Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSR 458 + A L LG TLTLP +AG VL IG+AVD+N+LV ER REE R +S+ +L GF + Sbjct: 333 SYAALVALGVTLTLPGLAGFVLAIGMAVDANVLVFERAREECADRPKRSLRSALTTGFQK 392 Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 A+S + DSN T LIA +LFF G G V+GF +T+ + ++ SMF+A+ I RA+ + Sbjct: 393 AWSAVADSNATTLIAAGLLFFLGSGPVKGFGVTLAIGVIASMFSALVIARALTEIAANSR 452 Query: 519 KMKSID----INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574 + I Q R + +S ++ + G++ G++ Sbjct: 453 FVSDYRNVNGIARPGAVRTWLTRKDPQIFRKPVRWLIVSAALVAVAVAGIVVRGVDLGVE 512 Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 F GG + +RPVD+ R L + GD Sbjct: 513 FTGGRLVEYSTSRPVDVETARDTLAAAGFGDAEVTTAGDGD-------LSVRTGKLDNDG 565 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 ++ + E +T E++GP + EL R ++ + ++ L Y+ +RF+W FA+ Sbjct: 566 EHALRAALAEEGGETTKVRDELIGPSLGDELRRNALIALGVAVAVQLAYLAVRFRWTFAV 625 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 ++ ++ D+ +G FA G + +AA+LT+IGYSVND VVV+DR+R+ + Sbjct: 626 SSVAAMVHDVILVVGAFAWLGRPVDGIFLAALLTVIGYSVNDSVVVFDRVRE-LWGANRR 684 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 + +++ +T+ R+V T M A + +AV GG + FA+ + GIVV SS+F Sbjct: 685 TPLDTIARRAVLQTVPRTVNTGMGALFILAALAVLGGDSLADFALALLIGIVVGTWSSVF 744 Query: 815 IAAPILLFIYDWRA 828 A P L + Sbjct: 745 TAVPGALLLERNAK 758 >gi|294674946|ref|YP_003575562.1| protein-export membrane protein SecDF [Prevotella ruminicola 23] gi|294473597|gb|ADE82986.1| protein-export membrane protein SecDF [Prevotella ruminicola 23] Length = 1010 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 222/843 (26%), Positives = 385/843 (45%), Gaps = 74/843 (8%) Query: 58 LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADK 114 +E V + + +R+ + K G+ ++++ +I + + E + Sbjct: 161 VEAALRTEVQSAVDNSFNVVRNRIDKFGVVQPNIQKLEGQSGRIMVEMPGIKEPERVRKL 220 Query: 115 VTLFLQGVNSKLNVD--------------PKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + + + + + D + Sbjct: 221 LQGSANLEFWETYNSQEVTPLLAQLNQRWAAQGGVDVADTTAVDSAATAAVADSAKTATG 280 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQ----------LPGEQDPSRLRQLLGT-- 208 + + ++ ++ E ++ I +D + + +++ + Sbjct: 281 DLAAKLAKKDSKDNKAVEMAKKQNPLFSIFQPTQGNTLAVVGYANARDTAEINKMIYSDL 340 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE-----DKVEISGIHLNGATANFDP 263 ++ ++ FG + + Y ++ + + G + GA +FD Sbjct: 341 AGRIFPAELKLRWGATPEDFGGQNTKGDIFELYALKVTEPSGRAPLEGDVITGAKDDFDQ 400 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 H P V + + GARR+ ++T+ NIGK +A+VLD V +AP I I G +QI+GNF Sbjct: 401 MGH-PSVSMQMNSDGARRWSQITKQNIGKAVAIVLDDAVYSAPRILTQIDGGNSQITGNF 459 Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383 TIE LA L +G +P IV+E VG LG+ SI +G + V VL++++MI+LY Sbjct: 460 TIEATKDLANTLNSGKMPAPTRIVQEEVVGPSLGAQSIQQGIISFVVAFVLLMIYMIMLY 519 Query: 384 GK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 G GL++D ++ N+ TL +L+ A LT+P IAGIVL +G AVD+N+L+ ERI+EE Sbjct: 520 GFVPGLLSDIALLFNLFFTLGILTSFQAALTMPGIAGIVLTLGTAVDANVLIYERIKEEL 579 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 +K V +L+ G+S A+S IFDSN T+LI ++L +FG G V+GFA T + I+IS FT Sbjct: 580 KKGLGVKEALNKGYSNAFSAIFDSNFTSLITGIILLYFGTGPVKGFATTWIIGIVISFFT 639 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 A+ + R + ++ K ++ L FM A + ++ I Sbjct: 640 AVYLTRVVYDAMLSKDKWTNLTFVTGYSKNL-MQNAKYNFMGAYKKTYALWAAVAVVCIG 698 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK------- 615 F GL+ IDF GG V ++ + VR + I I + Sbjct: 699 SFFVRGLSQSIDFTGGRNYVVTLDKQTPVEEVRKAMAGAFINTIGEKANQEANTSVIALG 758 Query: 616 ----------NFLVRLQYQPGDSVAQTRVLEMVKKK------------ITEIVPLSTIQN 653 N+ + D A+ + +KK ++ +I + Sbjct: 759 TDGKTVRISTNWDIESNNPEVDDKAENILFAALKKAGLVSQENVEAFKNPDVREGGSIIS 818 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712 + VGP +++++ I+ V I+ IA+ +YI +RF+ F++GA+ L LD +G ++ Sbjct: 819 SAKVGPSVAKDITHGAIISVCIALIAIFLYILLRFRNLAFSVGAVVALALDALLVIGVYS 878 Query: 713 L------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 L +E + + A+LT+IGYS+NDKVVV+DR+R+N+ LY + L + S+N Sbjct: 879 LCWGWVPMSLEIDQVFIGAILTVIGYSINDKVVVFDRIRENLGLYGKR-DRQQLFNDSLN 937 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +TL R++ TS+ I +L + + GG I SF++ M G+V SS+FIAAP Sbjct: 938 QTLARTINTSVTTLIVLLAIFILGGDSIRSFSLAMILGVVFGTLSSLFIAAPTAFLWMGR 997 Query: 827 RAK 829 K Sbjct: 998 TIK 1000 Score = 64.3 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 94/266 (35%), Gaps = 41/266 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N + + ++ + +F+ + + + Sbjct: 1 MQNKGIVKFIAVLLILVCCFYLSFSFVTRHYESKAAAMGEEAGAEYLDSINNEKVYMGIY 60 Query: 40 -----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI 94 + I LGLDL+GG +++LEV D V+ +D + Sbjct: 61 SLKQCREMEIGLGLDLKGGMNVILEVSVPDVVDVLADHKTDAAYKKAMELAKKEEE-TSQ 119 Query: 95 QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154 + I+L + +G L + + + + Sbjct: 120 NDFISLFVKYWKQ------------EGNGRPLAAIFATQQMKGKVSTSSTDSQVEAALRT 167 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 + A++ S ++R RID+ G+ + IQ+ S RI++++PG ++P R+R+LL +A + Sbjct: 168 EVQSAVDNSFNVVRNRIDKFGVVQPNIQKLEGQSGRIMVEMPGIKEPERVRKLLQGSANL 227 Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDG 238 F + + + + + G Sbjct: 228 EFWETYNSQEVTPLLAQLNQRWAAQG 253 >gi|150024627|ref|YP_001295453.1| bifunctional preprotein translocase subunit SecD/SecF [Flavobacterium psychrophilum JIP02/86] gi|149771168|emb|CAL42635.1| Preprotein translocase SecD and SecF subunits [Flavobacterium psychrophilum JIP02/86] Length = 994 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 179/810 (22%), Positives = 342/810 (42%), Gaps = 50/810 (6%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123 V ++ LR + K G+ ++ ++ +I + ++ + ++ Q Sbjct: 177 VEESIESAFRVLRERIDKFGVTQPNIVKLGTSGRILVELPGAKDVDRAKKLLSSTAQLEF 236 Query: 124 SKLNV---------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS--MEIIRQRID 172 + + L T ++ ++++ ++ D Sbjct: 237 WETLKVDEIGSYLGSVNEALKKTEKATVAVDTAKSKTSSKIEGLLVDKTTKDSTATKKAD 296 Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT---AKMSFHKVLPNNSKKGFMFG 229 + ++ +D + + + A + + V Sbjct: 297 AGPFFNKIVSGGQQGSPVLAYVKSKDTAVINAYFKRSDIKALLPSNLVDTRFVWGKPSAK 356 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 + + + + +SG L A+ ++D V + R Sbjct: 357 TGDVVELYALKGNRTNTPPMSGSVLLDASNSYDQTGKPSVTMQMSGKGAKIWEELTGRAY 416 Query: 290 IGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K ++ ++ + + I G+++ISG+FTI+ LA +LRAG LP IV Sbjct: 417 TQKSNIAIVLDNIVYSAPGVSSGPISGGRSEISGSFTIDETKDLANVLRAGKLPAAAEIV 476 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 + VG LG +I G + + GL+L+ L+M++ YGK A+ ++ +N++ +++ Sbjct: 477 QSEVVGPSLGQKAIDSGLNSSIVGLLLVSLWMLIYYGKSAWYANIALGVNLLFLFGVMAS 536 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR--AYSTIFD 465 G LTLP IAGIVL +G AVD+NI++ ER +EE R S+ ++ FS A +I D Sbjct: 537 FGFVLTLPGIAGIVLTMGTAVDANIIIYERAKEELRAGLSLDEAVKKSFSWTGAMRSIID 596 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +N+T ++ +L+ FG G ++GFA+T+ + I+ S+FT+I I R + + Sbjct: 597 ANVTHILTGSILYIFGTGPIKGFALTLLIGIITSLFTSIFITRIFLDRAVAKGTKLEFAN 656 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVL 584 + F++ + S I S+ +F + G+DF GG V Sbjct: 657 SWSKD---WFTGFNFDFLKIKKGTYIFSSCVIIVSLVSIFFVNGLDQGVDFVGGRTFQVK 713 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 +PV+ + + + L + + + G ++ L + E+ KK Sbjct: 714 FEKPVEPTAIAAELSKKDVFESAEAKIFGTEDQLKITTKYKIKEEGVSVDTEVNKKLYNA 773 Query: 645 IVPLSTIQNTEIV------------------GPKISRELIRKGIVGVIISAIAMLIYIWI 686 + P + T P IS ++ V+ + + + +Y+ + Sbjct: 774 LKPHFSSSMTYEKFINSYEGKEFGVLQASKISPAISADIKTNSFWAVLGAMLVVGLYLVL 833 Query: 687 RFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVV 739 F+ ++LGAI ++ D+ LG ++L F +E + +AA+LT+IGYS+ND V+ Sbjct: 834 SFRKLGYSLGAIAAVLHDVVFVLGIYSLCYKFMPFHMEMDQHFIAAILTVIGYSMNDTVI 893 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799 V+DR+R+ + +F +++ SIN TL R++ TS+ + +L M ++GG I F Sbjct: 894 VFDRIREFLAGNRKG-NFNQIVNDSINTTLSRTINTSLTMLLVLLIMFIFGGESIRGFIF 952 Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 M GI V SS+FIA P+L+ + K Sbjct: 953 AMLVGIAVGTYSSLFIATPVLVDTMSAKDK 982 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 92/198 (46%), Gaps = 20/198 (10%) Query: 25 NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84 N + + +I+ GLDL GG +++L++ D + ++ + F+K Sbjct: 57 NVFNLGFTNFTYDEVKTKQINKGLDLEGGINVILQISVKDVLKQLANNSTNPV--FVKSL 114 Query: 85 GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144 + + Q + +F D+ + + + +EI Sbjct: 115 ADAKNNQKGNQTYLN-AFYDAFDANSNGTTL------------LSSPDIFGNRNLAEEIK 161 Query: 145 IVLSQNNIDQVISHAIEQSME----IIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDP 199 + +S ++ ++I+ +E+S+E ++R+RID+ G+++ I + S RIL++LPG +D Sbjct: 162 MQMSDSDAKKIINKKVEESIESAFRVLRERIDKFGVTQPNIVKLGTSGRILVELPGAKDV 221 Query: 200 SRLRQLLGTTAKMSFHKV 217 R ++LL +TA++ F + Sbjct: 222 DRAKKLLSSTAQLEFWET 239 >gi|329956606|ref|ZP_08297179.1| export membrane protein SecD [Bacteroides clarus YIT 12056] gi|328523978|gb|EGF51054.1| export membrane protein SecD [Bacteroides clarus YIT 12056] Length = 996 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 210/823 (25%), Positives = 378/823 (45%), Gaps = 60/823 (7%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 170 EEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS----------------- 163 + + +T+ ++ +L+ + ++ ++ Sbjct: 230 LEFWETYNAKDVAPYLQSTDAKLRAILATTEDAEEVTDSVAAEAPAVAQATSTADSLAAA 289 Query: 164 -----------MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 +E I++ + + + G D ++ + A+M Sbjct: 290 LKGESKAQAADLEQIKKEHPLLAVLQVNPSGQGPVVGYANYKDTADINKYLSMPEVQAEM 349 Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272 L + + + + KP V + Sbjct: 350 PKDLRLKWGVSPYEYDPKAQTFELYAIKSTERSGRAPLEGDVVVNAKDEYDHYGKPAVSM 409 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 S + GARR+ ++T+ N+GK +A+VLDG V +AP +NQ I G +QI+G+FT E A LA Sbjct: 410 SMNTDGARRWAQLTKQNVGKAIAIVLDGYVYSAPNVNQEITGGNSQITGHFTPEQAKDLA 469 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVAD 391 +L++G +P +IV+E VG LG SI G + V L+L++++M +YG G+VA+ Sbjct: 470 NVLKSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCTMYGLIPGMVAN 529 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ LN+ TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R + V + Sbjct: 530 GALVLNMFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKGVKKA 589 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 L G++ A+S IFDSN+T++I ++LF FG G +RGFA T+ + ILIS FTA+ + R Sbjct: 590 LADGYANAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTAVFMTRLFY 649 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571 + K+ ++ + L + FM + ++ + + I L GL+ Sbjct: 650 EHFMSKDKLLNLTFSTGISKNL-MANVHFDFMGRNKLWMTLTGIGVVVCIAFLSMRGLSQ 708 Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 IDF GG V V+ VR + S G VR+ Sbjct: 709 SIDFTGGRNFKVQFENKVEPEQVRELIASKFGDANVSVIAIGADGKTVRISTNYRIEEEG 768 Query: 632 TRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + E +I +++ VGP I+ ++ I Sbjct: 769 NNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADDIKVSAIWS 828 Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725 V+++ IA+ +YI +RF+ +++G++ L D LG +++ F +E + T + A Sbjct: 829 VVLALIAIGLYILLRFRNIAYSIGSVCALACDTIIILGAYSMFWGILPFSLEIDQTFIGA 888 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 +LT IGYS+NDKVV++DR+R+ LY + + L + S+N TL R++ TS++ I +L Sbjct: 889 ILTAIGYSINDKVVIFDRVREFFGLYPKR-NKKVLFNDSLNTTLARTINTSLSTLIVLLC 947 Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + + GG I SFA M G+V SS+F+A+PI + + Sbjct: 948 IFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYMLMKNKK 990 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 83/184 (45%), Gaps = 7/184 (3%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I +IVGP + + I GI+ +++ I +++Y+ + + A L+L++ TLG Sbjct: 482 HIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCTMYGLIPGMVANGALVLNMFFTLG 541 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + F ++ +A ++ +G +V+ V++Y+R ++ ++ + + Sbjct: 542 ILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKGVKKALADGYANAF 598 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +++ + I+ + + +G I FA + GI++ S F A + Y+ Sbjct: 599 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYEHFMS 654 Query: 830 NARI 833 ++ Sbjct: 655 KDKL 658 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 94/261 (36%), Gaps = 44/261 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWF 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + SDE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKSDEAFNQ--ALATAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ + F K ++ L ++ S + Sbjct: 119 TTSQDDVITLFIREYHKIAPGASLSQLFAT-----------QQLKDKVNQKSSDAEVEKV 167 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + + + A++ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 168 LREEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGV 230 A + F + ++ Sbjct: 228 ANLEFWETYNAKDVAPYLQST 248 >gi|153805802|ref|ZP_01958470.1| hypothetical protein BACCAC_00039 [Bacteroides caccae ATCC 43185] gi|149130479|gb|EDM21685.1| hypothetical protein BACCAC_00039 [Bacteroides caccae ATCC 43185] Length = 1007 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 221/832 (26%), Positives = 378/832 (45%), Gaps = 70/832 (8%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V ++ + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 170 EEVKAAVENSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNN----------------------------- 151 + + + + + ++ VL+Q Sbjct: 230 LEFWETYTAKEILPAMQSADAKLRAVLTQETTTDSVTTDTTKAAVLTEATPTKKAVSAAD 289 Query: 152 -------IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204 D A +ME I+++ + I + G D ++ Sbjct: 290 SLAAALKGDAKQDDATAANMEEIKKQYPLLSILQLNSSGQGPVIGYANYKDTADINKYLA 349 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDP 263 + A++ L + + K + G + A FD Sbjct: 350 MPEIKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFDQ 409 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 + V +S + GARR+ ++T+ NIG+ +A+VLD V +AP +N I G++QI+G+F Sbjct: 410 YSKPA-VSMSMNSDGARRWAQLTKQNIGRAIAIVLDNYVYSAPNVNTEITGGRSQITGHF 468 Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383 T E A LA +L++G +P +IV+E VG LG +SI G + V L+L++++M +Y Sbjct: 469 TPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMY 528 Query: 384 GK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 G G+VA+ ++ LN TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE Sbjct: 529 GIIPGMVANGALILNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEEL 588 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 R + V +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + IL+S FT Sbjct: 589 RAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFFT 648 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 A+ + R + + K + L FM + I I I Sbjct: 649 AVFMTRLVYEHFMSKDKWLGLTFTTKISKNL-MTNTRFDFMGTNKKSLIIVSAVIIVCIS 707 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622 GL+ IDF GG V PV+ VR + S G VR+ Sbjct: 708 SFAIRGLSQSIDFTGGRNFKVQFENPVEPEQVRELIASKFGDANVSVIAIGTDKKTVRIS 767 Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISR 663 A V ++ + E + Q +++ VGP I+ Sbjct: 768 TNYRIEDAGNNVDSEIESYLYETLKPVLTQNISLETFIDRDNHTGGSIVSSQKVGPSIAD 827 Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGI 716 ++ I V+++ +A+ +YI +RF+ +++G+I L D +G ++L F + Sbjct: 828 DIKTGAIYSVVLALLAIGLYILLRFRNIAYSIGSIVALSCDTIMIIGAYSLFWGILPFSL 887 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 E + T + A+LT IGYS+NDKVV++DR+R+ LY R L + S+N TL R++ TS Sbjct: 888 EIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINTS 946 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I +L + + GG I SFA M G+V+ SS+FIA+PI + + Sbjct: 947 LSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 998 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 92/249 (36%), Gaps = 44/249 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYNNKAKEIANGDMKVEQDYLDSLSNEKVWL 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALATAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ + F + K++ L ++ + + Sbjct: 119 INSQDDVITLFVKEYHRIAPDAKLSELFAT-----------QQLKDKVSQKSTDAEVEKV 167 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + + + A+E S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 168 LREEVKAAVENSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVL 218 A + F + Sbjct: 228 ANLEFWETY 236 >gi|288800478|ref|ZP_06405936.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella sp. oral taxon 299 str. F0039] gi|288332691|gb|EFC71171.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella sp. oral taxon 299 str. F0039] Length = 995 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 211/826 (25%), Positives = 379/826 (45%), Gaps = 59/826 (7%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120 + V + + +R+ + K G+ ++++ + +I + R E + + Sbjct: 164 EEVKNAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIREPERVRKLLQGSAN 223 Query: 121 GVNSKLNVDPK-----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI---- 171 + + L E + + ++ A E +E+ + Sbjct: 224 LEFWETFNSDEIVPYLVQLDQRLANGETTADTTAVADTAKVAKAAEPKLELNTNKKANAK 283 Query: 172 ----DQIGISESTIQRLGSHRILIQLP---------GEQDPSRLRQLLGTTAKMSFHKVL 218 D+ I+E+ + +D + + + + + Sbjct: 284 LNVNDEAKIAEAKRAHPLLSMLQTTGNGALALVGFASVRDTAEINKAIYSATAKQVLPSD 343 Query: 219 PNNSKKGFMFGVRFLRDSDGNQY----LVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274 ++ G + + G + A F+ T P V ++ Sbjct: 344 VKLMWSAKPEDGIKAKNIYGLYAIKVTTANGRAPLEGDVITDAKDQFNNLTGAPEVGMTM 403 Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334 + GARR+ +T+ N GK +A+VLDG V +AP +N I G++ ISG+FTIE LA Sbjct: 404 NTEGARRWAALTKANTGKAIAIVLDGVVYSAPRVNGEIDGGQSSISGSFTIEDTKDLANT 463 Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFS 393 L++G +P IV+E VG LG+ SI +G + V+++++M+V+YG G++A+ + Sbjct: 464 LKSGRMPAPARIVQEEVVGPTLGAQSIQQGIVSFGIAFVILMIYMVVMYGFTPGMMANIA 523 Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453 + +N+ TL +L+ A LTL IAG+VL +G AVD+N+L+ ER +EE + + ++ Sbjct: 524 LLVNLFFTLGILTSFQAALTLSGIAGMVLSLGTAVDANVLIYERTKEELKLGKDTRQAMS 583 Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513 G+ A+S IFDSN T++I ++L+ FG G +RGFA T+ + I+ S FTA+ + R + Sbjct: 584 EGYRNAFSAIFDSNFTSIITGIILYVFGTGPIRGFATTLIIGIICSFFTAVYLTRLVFEN 643 Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 + K ++ L + FM + + + +I GL+ I Sbjct: 644 KMNKGKWLNLTFTTGISRNL-MTNTHVGFMSFYKKTFSVVGVIILAAIVSFAVRGLSRSI 702 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 DF GG + RPV+ +R + + G + G + +R+ Sbjct: 703 DFTGGRNYVITFERPVEPEQIRGIIANAFPGTTTGALALGTDHKTIRISTNYKIESNSPT 762 Query: 634 VLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + + +I +I ++ VGP +++++ I+ V Sbjct: 763 VDDEAETILYKALKKAGFVSQPNVESFKNPDIREGGSIISSTKVGPSVAKDITHGAILSV 822 Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAV 726 +++ A+ IYI IRF+ F++G+ L +D LG ++L F +E + T + A+ Sbjct: 823 VLALFAIFIYILIRFRNMAFSIGSTVALAVDTIIVLGVYSLCWGWMPFSLEIDQTFIGAI 882 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 LT+IGYS+NDKVVV+DR+R+NM+L+ F+ L + SIN+TL R++ TS + I +L + Sbjct: 883 LTVIGYSINDKVVVFDRIRENMQLHQK-QDFKTLFNDSINQTLTRTINTSTSTLIVLLCI 941 Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 GG I SF+ M+ G++V SSIF+AAPI + R Sbjct: 942 FFLGGESIRSFSFAMSLGVIVGTLSSIFVAAPIAFLTLGKQKGKRR 987 Score = 64.7 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 96/273 (35%), Gaps = 38/273 (13%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPKN--------------- 42 M+N +++ ++ + +F S + + + Sbjct: 1 MQNKGIVIVTAVLLTLASIFYLSFSFATRYYDSKAEAIKDPIAQQDYKDSVKYLGIYSYQ 60 Query: 43 -----RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG +++LE+ D + +D E + Sbjct: 61 KCLETQIGLGLDLKGGMNVILEISVPDVLETLADHKTDAFF-VKAMEEAKKEEETSQGDF 119 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 I+L + +L L S + + + + Sbjct: 120 ISLFVK------------SFKKNASGHRLAEIFATQQLQGKISPNSSDSEVEKVLREEVK 167 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 +AI+ S ++R RID+ G+ + IQ+ RI++++PG ++P R+R+LL +A + F Sbjct: 168 NAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIREPERVRKLLQGSANLEFW 227 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248 + ++ ++ + + + Sbjct: 228 ETFNSDEIVPYLVQLDQRLANGETTADTTAVAD 260 >gi|218131487|ref|ZP_03460291.1| hypothetical protein BACEGG_03105 [Bacteroides eggerthii DSM 20697] gi|317476447|ref|ZP_07935696.1| protein-export membrane protein SecD [Bacteroides eggerthii 1_2_48FAA] gi|217986419|gb|EEC52756.1| hypothetical protein BACEGG_03105 [Bacteroides eggerthii DSM 20697] gi|316907473|gb|EFV29178.1| protein-export membrane protein SecD [Bacteroides eggerthii 1_2_48FAA] Length = 1000 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 214/824 (25%), Positives = 378/824 (45%), Gaps = 62/824 (7%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 170 EEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229 Query: 121 GVNSK---------------------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 + L +T E V + ++ A Sbjct: 230 LEFWETYNAKDVASYLQSADAKLRAILATTEDSTEATDSTAAETPAVAQATSTADSLAAA 289 Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHR----ILIQLPGEQDPSRLRQLLGTTAKMSFH 215 ++ + ++QI + L + ++ +D + + + L + Sbjct: 290 LKGESQAQAANLEQIKKEHPLLAVLQVNPSGQGPVVGYANYKDTADINKYLSMPEVQAEM 349 Query: 216 KVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + + + + G + A F KP V Sbjct: 350 PKDLRLKWGVSPYEYDPKAQTFELYAIKSTERNGRAPLEGDVVVNAKDEF-DHYGKPAVS 408 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 +S + GARR+ ++T+ N+GK +A+VLDG V +AP +NQ I G +QI+G+FT E A L Sbjct: 409 MSMNTDGARRWAQLTKQNVGKAIAIVLDGYVYSAPNVNQEITGGNSQITGHFTPEQAKDL 468 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVA 390 A +L++G +P +IV+E VG LG SI G + V L+L++++M +YG G+VA Sbjct: 469 ANVLKSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCSMYGFIPGMVA 528 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + ++ LN+ TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R + V Sbjct: 529 NGALVLNMFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKGVKK 588 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 +L G++ A+S IFDSN+T++I ++LF FG G +RGFA T+ + ILIS FTA+ + R Sbjct: 589 ALADGYANAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTAVFMTRLF 648 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570 + K+ ++ + L + FM + ++ + + I L GL+ Sbjct: 649 YEHFMSKDKLLNLTFSTGISKNL-MANVHFDFMGRNKLWMTLTGIGVVVCIAFLSMRGLS 707 Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630 IDF GG V V+ VR + S G VR+ Sbjct: 708 QSIDFTGGRNFKVQFENKVEPEQVRELIASKFGDANVSVIAIGADGKTVRISTNYRIEEE 767 Query: 631 QTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + ++ + E +I +++ VGP I+ ++ I Sbjct: 768 GNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADDIKVSAIW 827 Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVA 724 V+++ IA+ +YI +RF+ +++G++ L D LG +++ F +E + T + Sbjct: 828 SVVLALIAIGLYILLRFRNIAYSIGSVCALACDTIIILGAYSMFWGVLPFSLEIDQTFIG 887 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT IGYS+NDKVV++DR+R+ LY + + L + S+N TL R++ TS++ I +L Sbjct: 888 AILTAIGYSINDKVVIFDRVREFFSLYPKR-NKKVLFNDSLNTTLARTINTSLSTLIVLL 946 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + + GG I SFA M G+V SS+F+A+PI + Sbjct: 947 CIFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYMLMKHSK 990 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 84/184 (45%), Gaps = 7/184 (3%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I +IVGP + + I GI+ +++ I +++Y+ + + + A L+L++ TLG Sbjct: 482 HIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCSMYGFIPGMVANGALVLNMFFTLG 541 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + F ++ +A ++ +G +V+ V++Y+R ++ ++ + + Sbjct: 542 ILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKGVKKALADGYANAF 598 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +++ + I+ + + +G I FA + GI++ S F A + Y+ Sbjct: 599 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYEHFMS 654 Query: 830 NARI 833 ++ Sbjct: 655 KDKL 658 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 97/261 (37%), Gaps = 44/261 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWF 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + SDE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKSDETFNQ--ALATAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ + F I + L S+L + V + + + Sbjct: 119 TTSQDDVITLF--------IREYHKLAPDASLSQLFATQQLKDKVNQKSSDAEV---EKV 167 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + + + A++ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 168 LREEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGV 230 A + F + ++ Sbjct: 228 ANLEFWETYNAKDVASYLQSA 248 >gi|237717226|ref|ZP_04547707.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. D1] gi|262405993|ref|ZP_06082543.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647968|ref|ZP_06725519.1| protein-export membrane protein SecD [Bacteroides ovatus SD CC 2a] gi|294806917|ref|ZP_06765742.1| protein-export membrane protein SecD [Bacteroides xylanisolvens SD CC 1b] gi|298480083|ref|ZP_06998282.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides sp. D22] gi|229443209|gb|EEO49000.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. D1] gi|262356868|gb|EEZ05958.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636684|gb|EFF55151.1| protein-export membrane protein SecD [Bacteroides ovatus SD CC 2a] gi|294445946|gb|EFG14588.1| protein-export membrane protein SecD [Bacteroides xylanisolvens SD CC 1b] gi|295085560|emb|CBK67083.1| protein translocase subunit secF/protein translocase subunit secD [Bacteroides xylanisolvens XB1A] gi|298273892|gb|EFI15454.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides sp. D22] Length = 1003 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 215/827 (25%), Positives = 377/827 (45%), Gaps = 67/827 (8%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122 V ++ + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 172 VKAAVENSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS------------------------- 157 + + + + + ++ ++L++ + Sbjct: 232 FWETYTAREVLPAMQSADAKLRVILAEGTTADTDTIEAVLTEATPVEKKTVSAADSLAAA 291 Query: 158 -----HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT--- 209 A ++S + + Q + +I +D + + + L Sbjct: 292 LKGDVTAEDKSAANMEEIKKQYPLLSILQLNSSGQGPVIGYANYKDTADINKYLAMPEIK 351 Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKP 268 A + L + + K + G + A FD + Sbjct: 352 ADLPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFDQYSKPA 411 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 V ++ + GARR+ ++T+ NIG+ +A+VLD V +AP +N I G++QI+G+FT E A Sbjct: 412 -VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGHFTPEQA 470 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WG 387 LA +L++G +P +IV+E VG LG +SI G + V L+L++++M +YG G Sbjct: 471 KDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYGFIPG 530 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 +VA+ ++ LN TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R + Sbjct: 531 MVANCALILNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKG 590 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 V +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + IL+S FTA+ I Sbjct: 591 VKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFFTAVFIT 650 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 R + + K ++ L FM + I + I Sbjct: 651 RIVYEHFMNKDKWLNLTFTTKISKNL-MTNTHFDFMGTNKKSLIIVSAIIVVCIGSFAIR 709 Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 GL+ IDF GG V PV+ VR + S G VR+ Sbjct: 710 GLSQSIDFTGGRNFKVQFENPVEPEQVRELISSKFGDANVSVIAIGTDKKTVRISTNYRI 769 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRELIRK 668 V ++ + E + Q +++ VGP I+ ++ Sbjct: 770 EDEGNNVDSEIESYLYETLKPVLTQNITLETFIDRDNHTGGSIVSSQKVGPSIADDIKTG 829 Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF------GIEFNLT 721 I V+++ +A+ +YI +RF+ +++G+I L D +G ++LF +E + T Sbjct: 830 AIYSVVLALLAIGLYILLRFRNIAYSIGSIVALSCDTIMIIGAYSLFWGILPFSLEIDQT 889 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 + A+LT IGYS+NDKVV++DR+R+ LY R L + S+N TL R++ TS++ I Sbjct: 890 FIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRVLFNDSLNTTLARTINTSLSTLI 948 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +L + + GG I SFA M G+V+ SS+FIA+PI + + Sbjct: 949 VLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 995 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 44/249 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39 M+N ++ + ++ + + +F+ + ++ Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVML 60 Query: 40 --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ISLGLDL+GG +++LEV D + DE + Sbjct: 61 WNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALATAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ + F K K++ K + +++ E+ VL Sbjct: 119 VNSQDDVITLFIREYHKIAPDAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + A+E S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 172 ----VKAAVENSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVL 218 A + F + Sbjct: 228 ANLEFWETY 236 >gi|260910489|ref|ZP_05917157.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635331|gb|EEX53353.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 955 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 213/835 (25%), Positives = 373/835 (44%), Gaps = 69/835 (8%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122 V + + +R+ + K G+ ++++ + +I + R E + + Sbjct: 118 VQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERVRKLLQGSANLE 177 Query: 123 NSKLNVDPKKNL-----------------------LVTTTEKEISIVLSQNNIDQVISHA 159 + + + + E + ++N + +A Sbjct: 178 FWETFNAAEVVPYLTQLDARLANDQNGTDTAAVDTINAKAKAEQEVAKAKNEQPKFKLNA 237 Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA---KMSFHK 216 E + + +R + ++ + R+ + T A + Sbjct: 238 GEDNKPEMAERANDAQMAAAIKAHPLLARLQTVGGNALSTVGYASVRDTAAINKLIYGAL 297 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNGATANFDPKTH 266 + D + + E + + G + A FD Sbjct: 298 AKQILPSDLKLLWSAKPSDQVRVKNIYELHALKVTSTNGRAPLEGDVVTDANDEFDHNNG 357 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 PVV++ + GARR+ +T+ N+GK +A+VLD V +AP + I G + ISGNFTIE Sbjct: 358 APVVNMRMNSDGARRWAALTKANVGKAIAIVLDNVVYSAPRVTNEIDGGSSVISGNFTIE 417 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK- 385 LA L++G +P IV+E VG LG+ SI +G + V+++ +MI++YG Sbjct: 418 ETKDLANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIQSFAIAFVVLMAYMILMYGFT 477 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A+ ++ +N+ TL +L+ A LTL IAG+VL +G AVD+N+L+ ER +EE Sbjct: 478 PGMMANMALIVNLFFTLGILTSFQAALTLSGIAGMVLSLGTAVDANVLIYERTKEELAAG 537 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 + + +L G+ A+S IFDSN+T++I ++L+ FG G +RGFA T+ + I+ S FTA+ Sbjct: 538 KGLKQALKEGYGNAFSAIFDSNLTSIITGIILYSFGTGPIRGFATTLIIGIVCSFFTAVF 597 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + R + + + + + + FM + + I Sbjct: 598 LTRLVYEYQLNKDRWTKLTFTTAFSKNF-MQNVRFPFMSVYKKTFVLVAVLLAVFIGSFV 656 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 T GL+ IDF GG V + V VR+ L + G + G + +R+ Sbjct: 657 TRGLSQSIDFTGGRNYVVTFEKQVQPEQVRTILANAFPGCTTGALALGTDHKTIRISTNY 716 Query: 626 GDSVAQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISREL 665 V + + + +I +I ++ VGP +++++ Sbjct: 717 KIESNSPTVDDEAETILYNALKKAGLVSQKNVEAFKNPDIRQGGSIISSTKVGPSVAKDI 776 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718 I+ V+++ A+ +YI IRF+ F++G+ L +D T +G ++L F +E Sbjct: 777 TYGAIISVLLAIFAIFVYILIRFRNVAFSVGSTVALAIDTTFVIGLYSLLWGFMPFSLEI 836 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + T + A+LT+IGYS+NDKVVV+DR+R+NMKL+ F L + SIN+TL R++ TS + Sbjct: 837 DQTFIGAILTVIGYSINDKVVVFDRIRENMKLHPK-QDFHSLFNDSINQTLARTINTSFS 895 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 I +L + GG I SFA M+ G++ SSIFIAAPI K + Sbjct: 896 TLIVLLCILFLGGESIQSFAFAMSLGVIFGTLSSIFIAAPIAFLTLGKTNKGRAL 950 Score = 64.7 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 82/202 (40%), Gaps = 17/202 (8%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR-SFLKKEGIGVFSMRQIQNKIT 99 + +I LGLDL+GG +++LE+ D + +D L++ + + + Sbjct: 16 ETQIGLGLDLKGGMNVILEISVPDVIETLADHKTDVAFTKSLEQAKKEEETSQSDFISLF 75 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 + + KL L + S + + + A Sbjct: 76 IKYY--------------KQNAPGHKLAELFATQQLQGKVSPQSSDSEVEKALRAEVQAA 121 Query: 160 IEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 I+ S ++R RID+ G+ + IQ+ RI++++PG ++P R+R+LL +A + F + Sbjct: 122 IDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERVRKLLQGSANLEFWET 181 Query: 218 LPNNSKKGFMFGVRFLRDSDGN 239 ++ + +D N Sbjct: 182 FNAAEVVPYLTQLDARLANDQN 203 >gi|150010185|ref|YP_001304928.1| bifunctional preprotein translocase subunit SecD/SecF [Parabacteroides distasonis ATCC 8503] gi|149938609|gb|ABR45306.1| protein-export membrane protein SecD/SecF [Parabacteroides distasonis ATCC 8503] Length = 999 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 213/826 (25%), Positives = 382/826 (46%), Gaps = 63/826 (7%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113 + LQ D LR+ + + G+ ++++ +I + + E + Sbjct: 161 AQVVSVLKQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRK 220 Query: 114 KVTLFLQGVNSK---LN---------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 + + L + +L T + + I + Sbjct: 221 LLQGSANLEFWETYKLPEIYQQLVAADNVLATILSKETSADSVATDNVEKIADAADANVS 280 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--------------------GEQDPSR 201 ++ ++ + +E+ + +D + Sbjct: 281 EADSLLAELGQDKKDTEANQSMEEFAKQHPLFALLQISQYNGQLSPGSTVGIAQAKDMEK 340 Query: 202 LRQLLG--TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 + + L ++ + K +F + + G + A A Sbjct: 341 ISEYLNMKQVKEVLPRNLALKWGVKAIDDKEQFFELYALKVTNRDGSPALGGDVVTDANA 400 Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 +F + + +V++ + G++ + +T++NIG+ +A+VLD V +AP +N I G++ Sbjct: 401 DFMQQAGRSEQMVNMVMNAEGSKAWARLTKENIGRQIAIVLDEMVYSAPNVNDEITGGRS 460 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QI+G+FT E A LA +L++G + ++IV+E VG LG ++I G + V LVL+++ Sbjct: 461 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINAGVISFVLALVLLMV 520 Query: 378 FMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 +M YG GL+AD ++ LN+ T+ +L+ A LTLP IAG+VL +G+AVD+N+L+ E Sbjct: 521 YMCAFYGLVPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 580 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 R +EE R +S+ ++ G+S A+S IFDSN+T++I +VLF+FG G +RGFA TM + + Sbjct: 581 RTKEELRAGKSLGKAIADGYSNAFSAIFDSNLTSIITGIVLFYFGTGPIRGFATTMIIGL 640 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 S TA+ + R + ++ K+K++ L+ I F+ AR G I Sbjct: 641 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSLTKDLL-TNPKINFLGARKVGYLIPAAI 699 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + T GLN GIDF GG + N+ V VR+ L++ G +S Sbjct: 700 IVLGAISMMTIGLNNGIDFTGGRNYVIRFNQEVKTDDVRNMLDAQLDGSVSVIQIGTADQ 759 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKIT-----------EIVPLSTIQNTEIVGPKISREL 665 V Y+ D+ K + + IQ+++ VGP ++ ++ Sbjct: 760 VRVSTNYKINDNDPTVDQEIENKLFEGVKSLLPEGTTLDEFTTTFIQSSQKVGPSMADDI 819 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718 I+ VI + I M YI +RF+ F++GA ++ + F+ L F +E Sbjct: 820 KNSAILAVIFAMICMAAYILLRFRDVSFSVGAFASVATTTLCIISFYTLLWKVLPFSMEV 879 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + T +AA+LT+IGYS+ND VVV+DR+R+ + LY + +I+ ++N TL R+ TS+ Sbjct: 880 DQTFIAAILTIIGYSINDTVVVFDRIRETIALYPKRDRY-QVINDALNSTLCRTFNTSLT 938 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + VL + + GGS I SF + GI++ S++F+A PI + Sbjct: 939 TLVVVLCIFILGGSTIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 984 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 42/247 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43 M+N ++ + ++ + L +F+ Q S + P Sbjct: 1 MQNKGFVKVFAVLLTLVCLFYLSFSFVTQHYNSKAAEYAGGDPAKESAYLDSLSTQKVWL 60 Query: 44 -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 ISLGLDL+GG ++VLE++ D + D +F K + Sbjct: 61 GYTLKQCREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYAHQA 118 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 Q FA+ K + +++ + K + +++ ++ VL Sbjct: 119 TSQKDFIDLFAEEYKKLDSGARLSAIFSTF------ELKDKITPQSSDAQVVSVL----- 167 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211 Q + AI+ S ++R RID+ G+ IQR + RIL++LPG ++P R+R+LL +A Sbjct: 168 KQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227 Query: 212 MSFHKVL 218 + F + Sbjct: 228 LEFWETY 234 >gi|88803550|ref|ZP_01119075.1| putative protein-export transmembrane SecDF protein [Polaribacter irgensii 23-P] gi|88780562|gb|EAR11742.1| putative protein-export transmembrane SecDF protein [Polaribacter irgensii 23-P] Length = 1000 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 197/831 (23%), Positives = 368/831 (44%), Gaps = 65/831 (7%) Query: 60 VDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIAD 113 + + + + + LRS + K G+ +++I N +I + ++ E + Sbjct: 176 ISVKETLQKEINSSIGTAFEVLRSRIDKFGVASPDIQRIGNSGRIQIELPGAKDIERVTT 235 Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR----- 168 +T + ++ + + ++ + +L + +V+ +I Sbjct: 236 LITSKAELQFWEVYSNAEVLQYLSIANSKSIALLKDISKKEVVQEDEVIKDDIDDLLGAT 295 Query: 169 --------------------QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 Q IG ++ T ++ + + PS LR + Sbjct: 296 ADSTQVDQKMLFSYLSPMQSQLSSTIGYAKVTDTATVNNLLKRKEIRSLLPSELRYVKFL 355 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 SF+ P + + + D + G + A+ F Sbjct: 356 WDYKSFNPQSPAGTNDASQSDELVALYAIKSN--RNDVAPLEGDVILDASQVFSQLNKPE 413 Query: 269 VVDISFD--EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTI 325 V + K +AVVLD V TAP +N AI G ISG + TI Sbjct: 414 VSMTMNSGASKDWAKLTSDLAAQKNKFIAVVLDDNVYTAPTVNNAITGGTTSISGGSMTI 473 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 A +A +L+AG LP I++ VG LG +SI + ++L++L+MI+ YGK Sbjct: 474 TEAKDIATVLKAGKLPAAARIIQIEVVGPSLGQESIDASIQSFGLAIILVLLWMILYYGK 533 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 GL AD ++ +N++ +L+ A LTLP IAGI+L IG++VD+N+++ ERI+E K Sbjct: 534 AGLYADIALAVNILFIFGILASFSAVLTLPGIAGIILTIGMSVDANVIIFERIKESLFKK 593 Query: 446 QSVFCSLDM--GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + + S++ A S I D+NIT L+ ++L+ FG G ++GFA+T+ + I S+FTA Sbjct: 594 KGLKQSVEEGFSVKGALSAIIDANITTLLTGIILYVFGSGPIKGFALTLMIGIATSLFTA 653 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + I R ++ I + + + I ++F+++R IS I I Sbjct: 654 VFITRLLIDDAINKNAKLTFNTSVSKG---WFQNINVEFLKSRKIAYIISGAVIIGGIIS 710 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 +F+ GL G+DFKGG + ++ ++ + V +L+ I + + +K + Y Sbjct: 711 IFSIGLKQGVDFKGGRSFVIRFDQDMNATQVAESLKDAFITAPEVKTYGTQKQLKITTVY 770 Query: 624 QPGDS--VAQTRVLEMVKKKITEIVPLSTI--------------QNTEIVGPKISRELIR 667 + D V + + + +T + V P I+ ++ Sbjct: 771 RIDDEGQQVDEEVQNALFTGLKPYLGNTTYQDFKPGFEKEGAGVMSYIKVEPTIADDIKT 830 Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNL 720 + V S + +YI +RF+ F++GA+ + D+ L F++ F +E Sbjct: 831 SALYAVFGSLFIVFLYILLRFRKISFSIGAVIAVFHDVLIVLSVFSICYSFMPFDMEIGQ 890 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 + +AA+LT++GYS+ND VV++DR+R+ + + + + +++D++++ TLGR++ TS+ Sbjct: 891 SFIAAILTVVGYSLNDTVVIFDRIREFTETH-KTWKYSEVVDRALSSTLGRTINTSLTTL 949 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + +L + +GG I F + G+ V SS+F+A PI+ KN Sbjct: 950 LVMLAIFTFGGDSIKGFMFALIIGVAVGTYSSLFVATPIMFDTSKKEEKNK 1000 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 12/186 (6%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 + ++LGLDL+GG + +L+V + + +E + K + + + Sbjct: 80 VRDKEMNLGLDLKGGVNAILQVSVKEVLKNLSNDSKNEAFN--KALDTADENQKNSNSNY 137 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 + + L + + + + + I+ Sbjct: 138 ---------LDLFFKEFESIAGDTKLSDPSIFGTKSLSDKISFNEANISVKETLQKEINS 188 Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 +I + E++R RID+ G++ + S RI I+LPG +D R+ L+ + A++ F +V Sbjct: 189 SIGTAFEVLRSRIDKFGVASPDIQRIGNSGRIQIELPGAKDIERVTTLITSKAELQFWEV 248 Query: 218 LPNNSK 223 N Sbjct: 249 YSNAEV 254 >gi|282879048|ref|ZP_06287808.1| protein-export membrane protein SecD [Prevotella buccalis ATCC 35310] gi|281298782|gb|EFA91191.1| protein-export membrane protein SecD [Prevotella buccalis ATCC 35310] Length = 1014 Score = 338 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 215/851 (25%), Positives = 386/851 (45%), Gaps = 82/851 (9%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112 + + + Q D +R+ + + G+ ++++ Q +I + R E + Sbjct: 156 AEVEKALRQETQSAIDNSFNVVRTRIDQFGVVQPNIQKLEGQQGRIMVEMPGIREPERMR 215 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME------I 166 + + + +T + ++ +Q A +++E + Sbjct: 216 KLLQGSANLEFWETFNAEEIIPYLTQIDARLANGDTQVADTTSADTAATKAVEKTSEEKV 275 Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK--------------- 211 +++ + + + Q Q+ + L +L TT + Sbjct: 276 VKKADPKFQLKKDKKQGDVKVSNEEQIAAAKKEHPLLAILSTTGRNALSLVGYASVRDTA 335 Query: 212 -----MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNG 256 + + D + E + + G + Sbjct: 336 EVNRIIHSDLAKQILPADLKLLWSAKPADGLQVKNYYELHALKITTTTGRAPLEGDVIVD 395 Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316 A+ FD + KP V ++ + GARR+ +T+ NIG+ +A+VLDG V T+P I I G+ Sbjct: 396 ASDQFDHLSGKPEVSMTMNTDGARRWSAITKANIGRAVAIVLDGLVYTSPRIQGQIDGGQ 455 Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376 + I+G+FTIE LA L++G +P IV+E VG LG+ SI +G + V VL++ Sbjct: 456 SSITGSFTIEDTKDLANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIISFVIAFVLLM 515 Query: 377 LFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435 ++MI++Y G++A+ ++ +NV TL +L+ A LT+ IAG+VL +G AVD+N+L+ Sbjct: 516 IYMILMYNFIPGMIANCALIVNVFFTLGILTSFQAALTMSGIAGMVLTLGTAVDANVLIY 575 Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495 ERI+EE R + + ++ G+S A+S IFDSN+T+ I V+L FG G ++GFA T + Sbjct: 576 ERIKEELRAGKGMKQAVAAGYSNAFSAIFDSNLTSAITGVILLIFGTGPIQGFATTWLIG 635 Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555 + S F+A+ + R + + K ++ + +FM I + Sbjct: 636 LACSFFSAVFLTRLVYEHKLNKDKWLNLKF-WTGISENMMQNTRYKFMSMFKTSGTIYAI 694 Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG----------- 604 I GL+ IDF GG V ++ + VR+ L++ Sbjct: 695 AIAICIGSFVVRGLSQSIDFTGGRNYVVTVDKNTHVEEVRNALDNAFQNTVGKNAGKPAT 754 Query: 605 ------DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK------------ITEIV 646 + F N+ + D A+T + +KK +I Sbjct: 755 TTVIAIGTDGKTFRVSTNYNLESNDPQMDDQAETILYTSLKKAGLVKQSSIEAFKNPDIR 814 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 +I ++ VGP I++++ I V+I+ I + +YI +RF+ F++G++ LI+D Sbjct: 815 EGGSIISSSKVGPSIAKDITNNAIKSVVIALICIFLYILLRFRNIGFSIGSVAALIIDTM 874 Query: 706 KTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 +G F+L F +E + T + A+LT+IGY +ND VVV+DR+R+N+KL+ + Sbjct: 875 IVVGLFSLCYGWIGFSLEIDQTFIGAILTVIGYDINDSVVVFDRIRENLKLHPK-QDIQK 933 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 + SIN+TL R++ TS++ I ++P+ + G I SFA M G+ V SSIF+A+PI Sbjct: 934 TFNDSINQTLARTINTSVSTLIVLVPIFILGADSIRSFAFAMIIGVFVGTLSSIFLASPI 993 Query: 820 LLFIYDWRAKN 830 + + K Sbjct: 994 AYLVLGRKIKK 1004 Score = 70.9 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 94/273 (34%), Gaps = 38/273 (13%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPK---------------- 41 M+N +++ ++ + + + + + Sbjct: 1 MQNKGIVIVTAVLLTLASIFYLSFSAATRYYDGQAAKLKDPIAQQEYKDSVKYLGIYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG +++LE+ D V +D +F+K Q Sbjct: 61 RCLETQIGLGLDLKGGMNVILEISVPDVVEMLADHKTDA--AFVKSMKEARAEEETSQED 118 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 F + K ++ L + + + + Q Sbjct: 119 FISLFIKAYKKNAPGHRLAEIFAT-----------QQLQGKVNPQSTDAEVEKALRQETQ 167 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++R RIDQ G+ + IQ+ RI++++PG ++P R+R+LL +A + F Sbjct: 168 SAIDNSFNVVRTRIDQFGVVQPNIQKLEGQQGRIMVEMPGIREPERMRKLLQGSANLEFW 227 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248 + ++ + + Q + Sbjct: 228 ETFNAEEIIPYLTQIDARLANGDTQVADTTSAD 260 >gi|262382526|ref|ZP_06075663.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 2_1_33B] gi|262295404|gb|EEY83335.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 2_1_33B] Length = 999 Score = 338 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 212/826 (25%), Positives = 381/826 (46%), Gaps = 63/826 (7%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113 + LQ D LR+ + + G+ ++++ +I + + E + Sbjct: 161 AQVVSVLKQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRK 220 Query: 114 KVTLFLQGVNSK---LN---------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 + + L + +L + + I + Sbjct: 221 LLQGSANLEFWETYKLPEIYQQLVAADNVLATILSKEASADSVATDNVEKIADAADANVS 280 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--------------------GEQDPSR 201 ++ ++ + +E+ + +D + Sbjct: 281 EADSLLAELGQDKKDTEANQSMEEFAKQHPLFALLQISQYNGQLSPGSTVGIAQAKDMEK 340 Query: 202 LRQLLG--TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 + + L ++ + K +F + + G + A A Sbjct: 341 ISEYLNMKQVKEVLPRNLALKWGVKAIDDKEQFFELYALKVTNRDGSPALGGDVVTDANA 400 Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 +F + + +V++ + G++ + +T++NIG+ +A+VLD V +AP +N I G++ Sbjct: 401 DFMQQAGRSEQMVNMVMNAEGSKAWARLTKENIGRQIAIVLDEMVYSAPNVNDEITGGRS 460 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QI+G+FT E A LA +L++G + ++IV+E VG LG ++I G + V LVL+++ Sbjct: 461 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINAGVISFVLALVLLMI 520 Query: 378 FMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 +M YG GL+AD ++ LN+ T+ +L+ A LTLP IAG+VL +G+AVD+N+L+ E Sbjct: 521 YMCAFYGLVPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 580 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 R +EE R +S+ ++ G+S A+S IFDSN+T++I +VLF+FG G +RGFA TM + + Sbjct: 581 RTKEELRAGKSLGKAIADGYSNAFSAIFDSNLTSIITGIVLFYFGTGPIRGFATTMIIGL 640 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 S TA+ + R + ++ K+K++ L+ I F+ AR G I Sbjct: 641 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSLTKDLL-TNPKINFLGARKVGYLIPAAI 699 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + T GLN GIDF GG + N+ V VR+ L++ G +S Sbjct: 700 IVLGAISMMTIGLNNGIDFTGGRNYVIRFNQEVKTDDVRNMLDAQLDGSVSVIQIGTADQ 759 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKIT-----------EIVPLSTIQNTEIVGPKISREL 665 V Y+ D+ K + + IQ+++ VGP ++ ++ Sbjct: 760 VRVSTNYKIDDNDPTVDQEIENKLFEGVKSLLPEGTTLDEFTTTFIQSSQKVGPSMADDI 819 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718 I+ VI + I M YI +RF+ F++GA ++ + F+ L F +E Sbjct: 820 KNSAILAVIFAMICMAAYILLRFRDVSFSVGAFASVATTTLCIISFYTLLWKVLPFSMEV 879 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + T +AA+LT+IGYS+ND VVV+DR+R+ + LY + +I+ ++N TL R+ TS+ Sbjct: 880 DQTFIAAILTIIGYSINDTVVVFDRIRETIALYPKRDRY-QVINDALNSTLCRTFNTSLT 938 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + VL + + GGS I SF + GI++ S++F+A PI + Sbjct: 939 TLVVVLCIFILGGSTIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 984 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 42/247 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43 M+N ++ + ++ + L +F+ Q S + P Sbjct: 1 MQNKGFVKVFAVLLTLVCLFYLSFSFVTQHYNSKAAEYAGGDPAKESAYLDSLSTQKVWL 60 Query: 44 -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 ISLGLDL+GG ++VLE++ D + D +F K + Sbjct: 61 GYTLKQCREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYAHQA 118 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 Q FA+ K + +++ + K + +++ ++ VL Sbjct: 119 TSQKDFIDLFAEEYKKLDSGARLSAIFSTF------ELKDKITPQSSDAQVVSVL----- 167 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211 Q + AI+ S ++R RID+ G+ IQR + RIL++LPG ++P R+R+LL +A Sbjct: 168 KQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227 Query: 212 MSFHKVL 218 + F + Sbjct: 228 LEFWETY 234 >gi|301308233|ref|ZP_07214187.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides sp. 20_3] gi|300833703|gb|EFK64319.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides sp. 20_3] Length = 999 Score = 338 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 212/826 (25%), Positives = 381/826 (46%), Gaps = 63/826 (7%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113 + LQ D LR+ + + G+ ++++ +I + + E + Sbjct: 161 AQVVSVLKQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRK 220 Query: 114 KVTLFLQGVNSK---LN---------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 + + L + +L + + I + Sbjct: 221 LLQGSANLEFWETYKLPEIYQQLVAADNVLATILSKEASADSVATDNVEKIADAADANVS 280 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--------------------GEQDPSR 201 ++ ++ + +E+ + +D + Sbjct: 281 EADSLLAELGQDKKDTEANQSMEEFAKQHPLFALLQISQYNGQLSPGSTVGIAQAKDMEK 340 Query: 202 LRQLLG--TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 + + L ++ + K +F + + G + A A Sbjct: 341 ISEYLNMKQVKEVLPRNLALKWGVKAIDDKEQFFELYALKVTNRDGSPALGGDVVTDANA 400 Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 +F + + +V++ + G++ + +T++NIG+ +A+VLD V +AP +N I G++ Sbjct: 401 DFMQQAGRSEQMVNMVMNAEGSKAWARLTKENIGRQIAIVLDEMVYSAPNVNDEITGGRS 460 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QI+G+FT E A LA +L++G + ++IV+E VG LG ++I G + V LVL+++ Sbjct: 461 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINAGVISFVLALVLLMI 520 Query: 378 FMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 +M YG GL+AD ++ LN+ T+ +L+ A LTLP IAG+VL +G+AVD+N+L+ E Sbjct: 521 YMCAFYGLVPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 580 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 R +EE R +S+ ++ G+S A+S IFDSN+T++I +VLF+FG G +RGFA TM + + Sbjct: 581 RTKEELRAGKSLGKAIADGYSNAFSAIFDSNLTSIITGIVLFYFGTGPIRGFATTMIIGL 640 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 S TA+ + R + ++ K+K++ L+ I F+ AR G I Sbjct: 641 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSLTKDLL-TNPKINFLGARKVGYLIPAAI 699 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + T GLN GIDF GG + N+ V VR+ L++ G +S Sbjct: 700 IVLGAISMMTIGLNNGIDFTGGRNYVIRFNQEVKTDDVRNMLDAQLDGSVSVIQIGTADQ 759 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKIT-----------EIVPLSTIQNTEIVGPKISREL 665 V Y+ D+ K + + IQ+++ VGP ++ ++ Sbjct: 760 VRVSTNYKIEDNDPTVDQEIENKLFEGVKSLLPEGTTLDEFTTTFIQSSQKVGPSMADDI 819 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718 I+ VI + I M YI +RF+ F++GA ++ + F+ L F +E Sbjct: 820 KNSAILAVIFAMICMAAYILLRFRDVSFSVGAFASVATTTLCIISFYTLLWKVLPFSMEV 879 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + T +AA+LT+IGYS+ND VVV+DR+R+ + LY + +I+ ++N TL R+ TS+ Sbjct: 880 DQTFIAAILTIIGYSINDTVVVFDRIRETIALYPKRDRY-QVINDALNSTLCRTFNTSLT 938 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + VL + + GGS I SF + GI++ S++F+A PI + Sbjct: 939 TLVVVLCIFILGGSTIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 984 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 42/247 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43 M+N ++ + ++ + L +F+ Q S + P Sbjct: 1 MQNKGFVKVFAVLLTLVCLFYLSFSFVTQHYNSKAAEYAGGDPAKESAYLDSLSTQKVWL 60 Query: 44 -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 ISLGLDL+GG ++VLE++ D + D +F K + Sbjct: 61 GYTLKQCREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYAHQA 118 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 Q FA+ K + +++ + K + +++ ++ VL Sbjct: 119 TSQKDFIDLFAEEYKKLDSGARLSAIFSTF------ELKDKITPQSSDAQVVSVL----- 167 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211 Q + AI+ S ++R RID+ G+ IQR + RIL++LPG ++P R+R+LL +A Sbjct: 168 KQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227 Query: 212 MSFHKVL 218 + F + Sbjct: 228 LEFWETY 234 >gi|298374560|ref|ZP_06984518.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides sp. 3_1_19] gi|298268928|gb|EFI10583.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Bacteroides sp. 3_1_19] Length = 999 Score = 338 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 212/826 (25%), Positives = 381/826 (46%), Gaps = 63/826 (7%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113 + LQ D LR+ + + G+ ++++ +I + + E + Sbjct: 161 AQVVSVLKQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRK 220 Query: 114 KVTLFLQGVNSK---LN---------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 + + L + +L + + I + Sbjct: 221 LLQGSANLEFWETYKLPEIYQQLVAADNVLATILSKEASADSVATDNVEKIADAADANVS 280 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--------------------GEQDPSR 201 ++ ++ + +E+ + +D + Sbjct: 281 EADSLLAELGQDKKDTEANQSMEEFAKQHPLFALLQISQYNGQLSPGSTVGIAQAKDMEK 340 Query: 202 LRQLLG--TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 + + L ++ + K +F + + G + A A Sbjct: 341 ISEYLNMKQVKEVLPRNLALKWGVKAIDDKEQFFELYALKVTNRDGSPALGGDVVTDANA 400 Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 +F + + +V++ + G++ + +T++NIG+ +A+VLD V +AP +N I G++ Sbjct: 401 DFMQQAGRSEQMVNMVMNAEGSKAWARLTKENIGRQIAIVLDEMVYSAPNVNDEITGGRS 460 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QI+G+FT E A LA +L++G + ++IV+E VG LG ++I G + V LVL+++ Sbjct: 461 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINAGVISFVLALVLLMI 520 Query: 378 FMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 +M YG GL+AD ++ LN+ T+ +L+ A LTLP IAG+VL +G+AVD+N+L+ E Sbjct: 521 YMCAFYGLVPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 580 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 R +EE R +S+ ++ G+S A+S IFDSN+T++I +VLF+FG G +RGFA TM + + Sbjct: 581 RTKEELRAGKSLGKAIADGYSNAFSAIFDSNLTSIITGIVLFYFGTGPIRGFATTMIIGL 640 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 S TA+ + R + ++ K+K++ L+ I F+ AR G I Sbjct: 641 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSLTKDLL-TNPKINFLGARKVGYLIPAAI 699 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + T GLN GIDF GG + N+ V VR+ L++ G +S Sbjct: 700 IVLGAISMMTIGLNNGIDFTGGRNYVIRFNQEVKTDDVRNMLDAQLDGSVSVIQIGTADQ 759 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKIT-----------EIVPLSTIQNTEIVGPKISREL 665 V Y+ D+ K + + IQ+++ VGP ++ ++ Sbjct: 760 VRVSTNYKINDNDPTVDQEIENKLFEGVKSLLPEGTTLDEFTTTFIQSSQKVGPSMADDI 819 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718 I+ VI + I M YI +RF+ F++GA ++ + F+ L F +E Sbjct: 820 KNSAILAVIFAMICMAAYILLRFRDVSFSVGAFASVATTTLCIISFYTLLWKVLPFSMEV 879 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + T +AA+LT+IGYS+ND VVV+DR+R+ + LY + +I+ ++N TL R+ TS+ Sbjct: 880 DQTFIAAILTIIGYSINDTVVVFDRIRETIALYPKRDRY-QVINDALNSTLCRTFNTSLT 938 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + VL + + GGS I SF + GI++ S++F+A PI + Sbjct: 939 TLVVVLCIFILGGSTIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 984 Score = 67.8 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 42/247 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43 M+N ++ + ++ + L +F+ Q S + P Sbjct: 1 MQNKGFVKVFAVLLTLVCLFYLSFSFVTQHYNSKAAEYAGGDPAKESAYLDSLSTQKVWL 60 Query: 44 -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 ISLGLDL+GG ++VLE++ D + D +F K + Sbjct: 61 GYTLKQCREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYAHQA 118 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 Q FA+ K + +++ + K + +++ ++ VL Sbjct: 119 TSQKDFIDLFAEEYKKLDSGARLSAIFSTF------ELKDKITPQSSDAQVVSVL----- 167 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211 Q + AI+ S ++R RID+ G+ IQR + RIL++LPG ++P R+R+LL +A Sbjct: 168 KQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227 Query: 212 MSFHKVL 218 + F + Sbjct: 228 LEFWETY 234 >gi|255012553|ref|ZP_05284679.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. 2_1_7] gi|256839008|ref|ZP_05544518.1| protein-export membrane protein SecD/SecF [Parabacteroides sp. D13] gi|256739927|gb|EEU53251.1| protein-export membrane protein SecD/SecF [Parabacteroides sp. D13] Length = 999 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 212/826 (25%), Positives = 380/826 (46%), Gaps = 63/826 (7%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113 + LQ D LR+ + + G+ ++++ +I + + E + Sbjct: 161 AQVVSVLKQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRK 220 Query: 114 KVTLFLQGVNSK---LN---------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 + + L + +L + + I + Sbjct: 221 LLQGSANLEFWETYKLPEIYQQLVAADNVLATILSKEASADSVATDNVEKIADAADANVS 280 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--------------------GEQDPSR 201 ++ ++ + +E+ + +D + Sbjct: 281 EADSLLAELGQDKKDTEANQSMEEFAKQHPLFALLQISQYNGQLSPGSTVGIAQAKDMEK 340 Query: 202 LRQLLG--TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 + + L ++ + K +F + + G + A A Sbjct: 341 ISEYLNMKQVKEVLPRNLALKWGVKAIDDKEQFFELYALKVTNRDGSPALGGDVVTDANA 400 Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 +F + + +V++ + G++ + +T++NIG+ +A+VLD V +AP +N I G++ Sbjct: 401 DFMQQAGRSEQMVNMVMNAEGSKAWARLTKENIGRQIAIVLDEMVYSAPNVNDEITGGRS 460 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QI+G+FT E A LA +L++G + ++IV+E VG LG ++I G + V LVL+++ Sbjct: 461 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINAGVISFVLALVLLMV 520 Query: 378 FMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 +M YG GL+AD ++ LN+ T+ +L+ A LTLP IAG+VL +G+AVD+N+L+ E Sbjct: 521 YMCAFYGLIPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 580 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 R +EE R +S+ ++ G+S A+S IFDSN+T++I +VLF+FG G +RGFA TM + + Sbjct: 581 RTKEELRAGKSLGKAIADGYSNAFSAIFDSNLTSIITGIVLFYFGTGPIRGFATTMIIGL 640 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 S TA+ + R + ++ K+K++ L+ I F+ AR G I Sbjct: 641 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSITKDLL-TNPKINFLGARKVGYLIPAAI 699 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + T GLN GIDF GG + N+ V VR+ L++ G +S Sbjct: 700 IVLGAISFMTIGLNNGIDFTGGRNYVIRFNQEVKTDDVRNMLDAQLDGSVSVIQIGTADQ 759 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKIT-----------EIVPLSTIQNTEIVGPKISREL 665 V Y+ D+ K + + IQ+++ VGP ++ ++ Sbjct: 760 VRVSTNYKINDNDPTVDQEIENKLFEGVKSLLPEGTTLDEFTTTFIQSSQKVGPSMADDI 819 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718 I+ VI + I M YI +RF+ F++GA ++ + F+ L F +E Sbjct: 820 KNSAILAVIFAMICMAAYILLRFRDVSFSVGAFASVATTTLCIISFYTLLWKVLPFSMEV 879 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + T +AA+LT+IGYS+ND VVV+DR+R+ + LY + +I+ ++N TL R+ TS+ Sbjct: 880 DQTFIAAILTIIGYSINDTVVVFDRIRETIALYPKRDRY-QVINDALNSTLCRTFNTSLT 938 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + VL + + GGS I SF + GI++ S++F+A PI + Sbjct: 939 TLVVVLCIFILGGSTIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 984 Score = 67.8 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 42/247 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43 M+N ++ + ++ + L +F+ Q S + P Sbjct: 1 MQNKGFVKVFAVLLTLVCLFYLSFSFVTQHYNSKAAEYAGGDPAKESAYLDSLSTQKVWL 60 Query: 44 -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 ISLGLDL+GG ++VLE++ D + D +F K + Sbjct: 61 GYTLKQCREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYAHQA 118 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 Q FA+ K + +++ + K + +++ ++ VL Sbjct: 119 TSQKDFIDLFAEEYKKLDSGARLSAIFSTF------ELKDKITPQSSDAQVVSVL----- 167 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211 Q + AI+ S ++R RID+ G+ IQR + RIL++LPG ++P R+R+LL +A Sbjct: 168 KQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227 Query: 212 MSFHKVL 218 + F + Sbjct: 228 LEFWETY 234 >gi|300778699|ref|ZP_07088557.1| probable protein-export transmembrane SecDF protein [Chryseobacterium gleum ATCC 35910] gi|300504209|gb|EFK35349.1| probable protein-export transmembrane SecDF protein [Chryseobacterium gleum ATCC 35910] Length = 969 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 198/803 (24%), Positives = 350/803 (43%), Gaps = 56/803 (6%) Query: 61 DEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADK 114 V + + +R+ + K G ++++ +I++ + + + Sbjct: 170 QVKSIVKRKIDASVGTAFEVIRTRIDKLGAIQPNVQRVPGTARISVEMPGMKDIDKVKKM 229 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 + + ++ P+ + + + + ++D++ Sbjct: 230 LQTSAKLQFWEVQQVPE-------IAPYFQTLTTMVAAKGDSMGVAKNVNFMNLLQLDKL 282 Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234 + +L ++ ++ + LR + K + Sbjct: 283 RTNGVANVKLSDTAVVNKILNSKVAQSLRPANIKYTQFM------WGYKPEATDTESLVL 336 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 + + V + + + VVD+ D GA+ + +T N+GKP+ Sbjct: 337 YAIRGNINQKAPV----DGAVETASIGYDELSRIVVDMQMDSKGAKEWKTLTEKNVGKPV 392 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 AV LD RV TAP + AIP+G+ QISGNF+ E A L +L AG LP +V+ VG Sbjct: 393 AVTLDNRVYTAPNVVGAIPNGRTQISGNFSQEEAKELVDVLGAGKLPAGAKVVQATVVGP 452 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG ++I G + + +I++++I YG G+ A ++ +N+ ++ TLTL Sbjct: 453 SLGQEAIDSGLMSFIIAFAIIIVYIIFYYGGAGVYAVIAMVINLFYIFGIMDSGDFTLTL 512 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL + +AVD+N+++ ER +EE +S+ + GF A + I D + T + Sbjct: 513 PGIAGIVLTMAVAVDTNVIIYERTKEELFAGKSILEAYKDGFKHALNAIIDGHTTTFLTA 572 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 VVLFFFG G ++GFA+T+ + I +++FT++ + R M I + Sbjct: 573 VVLFFFGTGPIKGFALTLMIGIAMTLFTSVLLSRVM---IFSRLNKGKGLSVWTPATKNL 629 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 I F+ R + IS + +I I + THG YGIDF GG V ++ V V Sbjct: 630 FRNTWIDFIGKRKYAYIISAVLTIVCIISIATHGFKYGIDFTGGRNYVVRFDKDVKAEDV 689 Query: 595 RSNLESLQIGDI------SFQNFDGEKNFLVRLQYQPGDSVAQTRVL------------- 635 L +L + + F K + Y D + + Sbjct: 690 EEKLVALFKTEDGKNSSVEAKTFGNNKQLKISTDYLIQDESLKADQIIEQKLFEGLKSQL 749 Query: 636 ---EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691 +K + + I ++E VGP ++ ++ GI V+ + + IYI +RF+ W Sbjct: 750 PAGTTLKDFKSADKDHAGIISSEKVGPSVADDIQTHGIYAVLAALAMIFIYILVRFRKWQ 809 Query: 692 FALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 F+LGA+ L D LG ++L F +E N +AA+LT++GYS+ND V+++DR+R Sbjct: 810 FSLGAVAALFHDAVIILGAYSLLHKYMPFNMEINQDFIAAILTVLGYSINDTVIIFDRIR 869 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 + ++ S++ L D SI+ TLGR+ TS + +L + ++GG + F M GI Sbjct: 870 EYLRE-KKSLTLAGLFDDSISSTLGRTFNTSFTTILVILAIFIFGGDNLRGFMFAMLIGI 928 Query: 806 VVAASSSIFIAAPILLFIYDWRA 828 SSIF+A+ I Sbjct: 929 GFGTYSSIFVASAIAYDFLKTGK 951 Score = 62.8 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 114/312 (36%), Gaps = 15/312 (4%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE-LRSFLKKEGIGVFSMRQIQNK 97 + LGLDL+GG +++LE+++ D VN ++ L L K + + Sbjct: 70 AKDKEMKLGLDLKGGINVLLEINQRDLVNDLTNYSTNPVLIEALNKTDEAQKNSTK---- 125 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 D V + + N +T + ++ + + I Sbjct: 126 -----PYIDNFFEQFDVVNKAKGANLKLADPEIFGNTTLTEVKYNTPDEQVKSIVKRKID 180 Query: 158 HAIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 ++ + E+IR RID++G + + G+ RI +++PG +D +++++L T+AK+ F + Sbjct: 181 ASVGTAFEVIRTRIDKLGAIQPNVQRVPGTARISVEMPGMKDIDKVKKMLQTSAKLQFWE 240 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV----EISGIHLNGATANFDPKTHKPVVDI 272 V + + + + G+ V V + L + VV+ Sbjct: 241 VQQVPEIAPYFQTLTTMVAAKGDSMGVAKNVNFMNLLQLDKLRTNGVANVKLSDTAVVNK 300 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 + A+ + + V+ + + + +ETA I Sbjct: 301 ILNSKVAQSLRPANIKYTQFMWGYKPEATDTESLVLYAIRGNINQKAPVDGAVETASIGY 360 Query: 333 AMLRAGSLPIKL 344 L + +++ Sbjct: 361 DELSRIVVDMQM 372 >gi|227538022|ref|ZP_03968071.1| protein-export membrane protein SecD/SecF [Sphingobacterium spiritivorum ATCC 33300] gi|227242098|gb|EEI92113.1| protein-export membrane protein SecD/SecF [Sphingobacterium spiritivorum ATCC 33300] Length = 985 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 217/810 (26%), Positives = 374/810 (46%), Gaps = 47/810 (5%) Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVNS 124 + +Q LR+ + K G+ +++ Q N+I + ++ + + + Sbjct: 176 DNAIQNSYKVLRTRIDKFGVASPNIQIQQGTNRILIELPGVNDEQRVRKLLQGSAKLEFY 235 Query: 125 KLNVDPK--KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE---- 178 + + + + L ++ + + + ++ G S+ Sbjct: 236 ETHSNFQVYPLLENVNKTLAATLKAQKTSSADTTKADTTKKENLLANLGAGKGKSDSAAV 295 Query: 179 ---------------------STIQRLGSHRILIQLPGEQDPSRLRQLLGTTA--KMSFH 215 + Q ++ + +D +++ LL + Sbjct: 296 NAKLGEDNPLFAVLTPSVAMGANNQMQLVPGPMVGIAQLKDTAKVNALLAKPEIKSIIPA 355 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 + + K L +++ ++G + A + P+T++PVV + + Sbjct: 356 NLKLLWAVKPEQNSPNALSLYAIRPSGIDNGAVLTGDVITDAKNDIAPQTNQPVVSMQMN 415 Query: 276 EMGARRFFEVTRDNIGK--PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333 GAR + ++T +A+VLD V +AP +N+ IP+G +QISG+FT + LA Sbjct: 416 NEGAREWRKITAKAAQNKEAIAIVLDNVVYSAPNVNEEIPNGSSQISGSFTTDDTKDLAN 475 Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393 +L+AG LP IVEE VG LG +I G + + V++++FM+V Y + G A+ + Sbjct: 476 VLKAGRLPTTAKIVEEAIVGPSLGQAAIDAGVNSAIIAFVVVLIFMVVYYNRAGWAANIA 535 Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453 + +NV L +L+ L A LTLP IAGIVL +G AVD+N+L+ ERIREE +S+ ++ Sbjct: 536 VIVNVFFLLGVLASLNAVLTLPGIAGIVLTMGTAVDANVLIYERIREELGLGKSMRQAIA 595 Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513 G+ A +I DS IT + +VLFFFG G + GFA TM + I+ S+FTAI I R + F Sbjct: 596 DGYKHAMPSILDSQITTFLVGIVLFFFGSGPILGFATTMMVGIVTSLFTAIFISRLIFEF 655 Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 ++ S+ + F++ R +SI+ +I + +FT G G+ Sbjct: 656 MLDKDMKISVSYPWSANTLR---NANFNFIKNRKKFYIVSIIAAIICLGSIFTKGFTLGV 712 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 DF+GG V + V+L VR NL+ + + F E V Y+ ++ Sbjct: 713 DFQGGRTYTVRFEKAVNLENVRQNLDEVFQKTTEVKTFGSENQVRVTTTYKIDETSDAVD 772 Query: 634 VLEMVKKKI---TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689 + K + I + + VGP I+ ++ + I S I + YI IRF+ Sbjct: 773 KEVLDKLNLGLSKIGGNKHEILSQQKVGPSIANDIKSRATYSAIFSIIIIATYILIRFRK 832 Query: 690 WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 W ++ GA I D LG F+L F ++ + VAA+LT+I YSVND VVV+DR Sbjct: 833 WQYSAGAAIATIHDAVILLGLFSLLDGIVPFSLDIDQHFVAAILTVIAYSVNDTVVVFDR 892 Query: 744 MRKNMKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 +R+ + + + D+++ +IN TL R++ TS+ + + ++GG VI F+ + Sbjct: 893 LREYVNKPNSHNEKMSDIVNHAINTTLSRTIITSLTIIFVLAVLFIFGGEVIRGFSFAIL 952 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 GIVV SSIF+AAP + R + Sbjct: 953 IGIVVGTYSSIFLAAPSVYDFRKGRHMAEK 982 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 14/190 (7%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 N ++LGLDL+GG ++ +E+ D+ + D F G V R + Sbjct: 74 NELALGLDLKGGMNVTMEISLDELITNLANNPKD--EKFNTSLGNAVKKSRSSNKSLVDL 131 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 F + + + F +L+ T+ + Q D AI+ Sbjct: 132 FIEDYKSSGASTPLASFFA-------TQSNSSLIKATSSDKEVANFLQKEADN----AIQ 180 Query: 162 QSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 S +++R RID+ G++ IQ ++RILI+LPG D R+R+LL +AK+ F++ N Sbjct: 181 NSYKVLRTRIDKFGVASPNIQIQQGTNRILIELPGVNDEQRVRKLLQGSAKLEFYETHSN 240 Query: 221 NSKKGFMFGV 230 + V Sbjct: 241 FQVYPLLENV 250 >gi|288928982|ref|ZP_06422828.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella sp. oral taxon 317 str. F0108] gi|288329966|gb|EFC68551.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella sp. oral taxon 317 str. F0108] Length = 1003 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 207/845 (24%), Positives = 373/845 (44%), Gaps = 73/845 (8%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112 + + + +Q D +R+ + K G+ ++++ + +I + R E + Sbjct: 156 AEVEKVLRTEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERVR 215 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL----SQNNIDQVISHAIEQSMEIIR 168 + + + +T ++ + EQ + + Sbjct: 216 KLLQGSANLEFWETFNASEIVPYLTQLNARLASEQNGTDTAAVDTANARAKAEQEVAKAK 275 Query: 169 QRIDQIGISESTIQRLGSHRILIQ----------------------------LPGEQDPS 200 + ++ ++ + +D + Sbjct: 276 NEQPKFKLNTGDDKKTDVAQRANNAQTAAAIKANPLFSRLQPTGGNSLSIVGYANIRDTA 335 Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD----GNQYLVEDKVEISGIHLNG 256 + +L+ +++ + I G + Sbjct: 336 AINKLIYGPVAKQVLPPDLKLLWSAKPADQAKMKNIYELHAIKVTSTNGRAPIEGDVVTD 395 Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316 A+ F+ T P V + + GARR+ +T+ N+GK +A+VLD V +AP ++ I G Sbjct: 396 ASDEFNHTTGAPQVSMRMNSDGARRWAALTKANVGKAIAIVLDNAVYSAPRVSNEIDGGS 455 Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376 + ISGNFTIE LA L++G +P IV+E VG LG+ SI +G + V+++ Sbjct: 456 SSISGNFTIEETKDLANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIQSFAIAFVVLM 515 Query: 377 LFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435 ++M+++YG G++A+ ++ +N+ TL +L+ A LTL IAG+VL +G AVD+N+L+ Sbjct: 516 VYMVLMYGFTPGMMANTALIVNLFFTLGILTSFQAALTLSGIAGMVLSLGTAVDANVLIY 575 Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495 ER +EE + + ++ G+ A+S IFDSN+T++I ++L+ FG G +RGFA T+ + Sbjct: 576 ERTKEELAAGKGLKQAIKEGYGNAFSAIFDSNLTSIITGIILYSFGTGPIRGFATTLIIG 635 Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555 I+ S FTA+ + R + + + + + + FM + + Sbjct: 636 IVCSFFTAVFLTRLVYEYQLNKDRWTKLTFTTGFSKNF-MQNVHFPFMSVYKKTFVLVAV 694 Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 + T GL+ IDF GG V + V VR L + G + G Sbjct: 695 LLAVFVGSFVTRGLSRSIDFTGGRNYVVTFEKQVQPEQVRGILANAFPGCTTGALALGTD 754 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKI--------------------TEIVPLSTIQNTE 655 + +R+ V + + + +I +I ++ Sbjct: 755 HKTIRISTNYKIESNSPTVDDEAETILYNALKKAGLVSQKNVDAFKNPDIRQGGSIISST 814 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL- 713 VGP +++++ I+ V+++ A+ +YI IRF+ F++G+ L +D T +G ++L Sbjct: 815 KVGPSVAKDITYGAIISVLLAIFAIFVYILIRFRNVAFSVGSTVALAIDTTFVIGLYSLL 874 Query: 714 -----FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 F +E + T + A+LT+IGYS+NDKVVV+DR+R+NMKL+ FR L + SIN+T Sbjct: 875 WGFMPFSLEIDQTFIGAILTVIGYSINDKVVVFDRIRENMKLHPK-QDFRSLFNDSINQT 933 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TS + I +L + GG I SFA M+ G++ SSIFIAAPI Sbjct: 934 LARTINTSFSTLIVLLCILFLGGESIQSFAFAMSLGVIFGTLSSIFIAAPIAFLTLGKTQ 993 Query: 829 KNARI 833 K + Sbjct: 994 KGRAL 998 Score = 67.4 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 44/358 (12%), Positives = 109/358 (30%), Gaps = 42/358 (11%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPK---------------- 41 M+N +++ ++ + + + + Sbjct: 1 MQNKGIVIVTAVLLTLASIFYLSFSVATRYYDGKAAELKDPIAQQDYKDSVKYLGIYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR-SFLKKEGIGVFSMRQIQN 96 +I LGLDL+GG +++LE+ D + +D L++ + + Sbjct: 61 RCLETQIGLGLDLKGGMNVILEISVPDVIETLADHKTDAAFTKSLEQAKKEEETSQSDFI 120 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 + + + + ++ Q + + + Sbjct: 121 SLFIKYYKQNAPGHKLAELFATQQLQGKVSPQSSDAEVEKV--------------LRTEV 166 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 AI+ S ++R RID+ G+ + IQ+ RI++++PG ++P R+R+LL +A + F Sbjct: 167 QAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERVRKLLQGSANLEF 226 Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274 + + ++ + S+ N + + A ++ Sbjct: 227 WETFNASEIVPYLTQLNARLASEQN--GTDTAAVDTANARAKAEQEVAKAKNEQPKFKLN 284 Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 + +N A+ + S + T ++ Sbjct: 285 TGDDKKTDVAQRANNAQTAAAIKANPLFSRLQPTGGNSLSIVGYANIRDTAAINKLIY 342 >gi|167763764|ref|ZP_02435891.1| hypothetical protein BACSTE_02144 [Bacteroides stercoris ATCC 43183] gi|167697880|gb|EDS14459.1| hypothetical protein BACSTE_02144 [Bacteroides stercoris ATCC 43183] Length = 1002 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 213/824 (25%), Positives = 379/824 (45%), Gaps = 62/824 (7%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ +++ +I + + E + + Sbjct: 170 EEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS----------------- 163 + + + + ++ +L+ + ++ Sbjct: 230 LEFWETYNAKDVASYLQSADAKLRAILATTEDAAEATDSVAAEAPAVAQATSTTDSLAAA 289 Query: 164 -----------MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 +E I++ + + + G D ++ + A+M Sbjct: 290 LKGESKTQAADLEQIKKEHPLLAVLQVNPSGQGPVVGYANYKDTADINKYLSMPEIQAEM 349 Query: 213 SFHKVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 L + + + + G + A F KP V Sbjct: 350 PKDLRLKWGVSPFEYDPKAQTFELYAIKSTERNGRAPLEGDVVVNAKDEF-DHYGKPAVS 408 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 +S + GARR+ ++T+ N+GK +A+VLDG V +AP +NQ I G +QI+G+FT E A L Sbjct: 409 MSMNTDGARRWAQLTKQNVGKAIAIVLDGYVYSAPNVNQEITGGNSQITGHFTPEQAKDL 468 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVA 390 A +L++G +P +IV+E VG LG SI G + V L+L++++M +YG G+VA Sbjct: 469 ANVLKSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFVVALILLMIYMCSMYGFIPGMVA 528 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + ++ LN+ TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE R + V Sbjct: 529 NGALILNLFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKGVKK 588 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 +L G+S A+S IFDSN+T++I ++LF FG G +RGFA T+ + ILIS FTA+ + R Sbjct: 589 ALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTAVFMTRLF 648 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570 + K+ ++ + L + FM + ++ + + I L GL+ Sbjct: 649 YEHFMNKDKLLNLTFSTGISKNL-MANVHFDFMGRNKLWMTLAGVAVVVCIGFLSIRGLS 707 Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630 IDF GG V V+ VR + S G VR+ Sbjct: 708 QSIDFTGGRNFKVQFENKVEPEQVRELISSKFGDANVSVIAIGADGKTVRISTNYRIEEE 767 Query: 631 QTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + ++ + E +I +++ VGP I+ ++ I Sbjct: 768 GNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADDIKVSAIW 827 Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVA 724 V+++ IA+ +YI +RF+ +++G++ L D LG +++ F +E + T + Sbjct: 828 SVVLALIAIGLYILLRFRNIAYSIGSVCALACDTIIILGAYSMFWGILPFSLEIDQTFIG 887 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT IGYS+NDKVV++DR+R+ LY + + L + S+N TL R++ TS++ I +L Sbjct: 888 AILTAIGYSINDKVVIFDRVREFFGLYPKR-NKKVLFNDSLNTTLARTINTSLSTLIVLL 946 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + + GG I SFA M G+V SS+F+A+PI + + Sbjct: 947 CIFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYMLMKNKK 990 Score = 127 bits (318), Expect = 9e-27, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 85/184 (46%), Gaps = 7/184 (3%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I +IVGP + + I GI+ +++ I ++IY+ + + + A LIL++ TLG Sbjct: 482 HIVQEDIVGPSLGQASINAGIMSFVVALILLMIYMCSMYGFIPGMVANGALILNLFFTLG 541 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + F ++ +A ++ +G +V+ V++Y+R ++ ++ + + + Sbjct: 542 ILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKGVKKALADGYSNAF 598 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +++ + I+ + + +G I FA + GI++ S F A + Y+ Sbjct: 599 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYEHFMN 654 Query: 830 NARI 833 ++ Sbjct: 655 KDKL 658 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 98/261 (37%), Gaps = 44/261 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ-------------------------SMLDRF 35 M+N ++ + ++ + + +F+ + + F Sbjct: 1 MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYAHKAKEFAKGDVKVEQDYLDSLSNEKVWF 60 Query: 36 PSAMPKN----RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + K ISLGLDL+GG +++LEV D + SDE + Sbjct: 61 GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKSDEAFNQ--ALATAAKQA 118 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ + F I + + S+L + V + + + Sbjct: 119 TTSQDDVITLF--------IREYHRIAPDASLSQLFATQQLKDKVNQKSSDAEV---EKV 167 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209 + + + A++ S ++R RID+ G+ + IQ RI+++LPG ++P R+R+LL + Sbjct: 168 LREEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227 Query: 210 AKMSFHKVLPNNSKKGFMFGV 230 A + F + ++ Sbjct: 228 ANLEFWETYNAKDVASYLQSA 248 >gi|237711518|ref|ZP_04541999.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. 9_1_42FAA] gi|229454213|gb|EEO59934.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. 9_1_42FAA] Length = 977 Score = 337 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 211/826 (25%), Positives = 373/826 (45%), Gaps = 65/826 (7%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ ++ +I + + E + + Sbjct: 148 EEVKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSAN 207 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI---- 176 + + +++ + + +L+ + ++ + + Sbjct: 208 LEFWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVAADTVAVAQASAISAADSLAA 267 Query: 177 -------SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN--------- 220 S S + + +P+ ++G +V Sbjct: 268 ALKGETASNSAAMEQMKKEHPLASVLQLNPNGYGSVVGYADYKDTAQVNQYLAMKEVKEM 327 Query: 221 ----------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 F R + + G + + + +KP V Sbjct: 328 LPKDLRLKWGVKAADFDKQGRIFELYAIKSTERNGRAPLEGDVITD-AKDEYDQFNKPCV 386 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 +S + GARR+ +T++N+GK +A+VLDG V +AP +N I G +QI+GNFT E Sbjct: 387 SMSMNTDGARRWAVLTKNNVGKAIAIVLDGYVYSAPNVNGEITGGHSQITGNFTPEVTKD 446 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLV 389 LA +L++G +P IV+E VG LG +SI +G + V L+L++++M +YG G+V Sbjct: 447 LANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMV 506 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +N TL +L+ A LT+ IAG+VL +G+AVD+N+L+ ER +EE R ++V Sbjct: 507 ANCALVVNFFFTLGILTSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKTVK 566 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 +L G+S A+S IFDSN+T++I ++LF+FG G +RGFA T+ + IL S FTA+ + R Sbjct: 567 AALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRI 626 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + + K ++ L + FM + + I F GL Sbjct: 627 VYEHFMNKDKWLNLTFTTGISKNL-MQNVNYNFMGMMKRSFTVFGAIIVICIISFFIRGL 685 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 IDF GG V + V+ VR L+ D G +R+ + Sbjct: 686 AQSIDFTGGRNFVVQFEQQVEPETVRDLLKKKITEDNVQAIALGTDKKTIRITTNYRINE 745 Query: 630 AQTRVLEMVKKKITEIVPLST---------------------IQNTEIVGPKISRELIRK 668 + +++ + + + I +++ VGP I+ ++ Sbjct: 746 ESPTIDSEIEEFLYQSLKDGNLLGEGTTLEIFIDRDNRVGGSIISSQKVGPSIADDIKTS 805 Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721 I V+ + +A+ +YI +RF+ +++GA L +D +G ++L F +E + T Sbjct: 806 AIWSVLFALVAIGLYILLRFRNVAYSVGATVALAVDTILIIGAYSLCYGWVPFSLEIDQT 865 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 + AVLT IGYS+NDKVV++DR+R+ LY + L + S+N TL R++ TS++ I Sbjct: 866 FIGAVLTAIGYSINDKVVIFDRIREFFGLYPKR-NRMQLFNDSLNTTLARTINTSLSTLI 924 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 +L + V GG I SFA M G+V+ SSIFIAAPI + Sbjct: 925 VLLCIFVLGGDSIRSFAFAMILGVVIGTLSSIFIAAPIAYLTMGNK 970 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 83/176 (47%), Gaps = 3/176 (1%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 +IVGP + +E I +GI+ +++ I ++IY+ + + A L+++ TLG Sbjct: 464 QEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMVANCALVVNFFFTLGILT 523 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F ++ +A ++ +G +V+ V++Y+R ++ ++ + + + + Sbjct: 524 SFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKTVKAALADGYSNAFSAI 580 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++ + I+ + + +G I FA + GI+ + +++F+ + + Sbjct: 581 FDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRIVYEHFMNKDK 636 Score = 68.2 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 15/177 (8%) Query: 43 RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102 I LGLDL+GG +++LEV D V +DE + K Q+ F Sbjct: 50 EIGLGLDLKGGMNVILEVSVPDVVKALADNKTDEAFN--KAVAEASKQSITSQDDFITLF 107 Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162 K+ K+ K + +++ E+ VL + + AI+ Sbjct: 108 VKEYKKQAPNGKLAELFAT------QQLKDKVTTRSSDSEVEKVLREE-----VKAAIDN 156 Query: 163 SMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 S ++R RID+ G+++ IQ RI+++LPG ++P R+R+LL +A + F + Sbjct: 157 SYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSANLEFWET 213 >gi|212692205|ref|ZP_03300333.1| hypothetical protein BACDOR_01701 [Bacteroides dorei DSM 17855] gi|237726025|ref|ZP_04556506.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides sp. D4] gi|265752943|ref|ZP_06088512.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 3_1_33FAA] gi|212665082|gb|EEB25654.1| hypothetical protein BACDOR_01701 [Bacteroides dorei DSM 17855] gi|229435833|gb|EEO45910.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides dorei 5_1_36/D4] gi|263236129|gb|EEZ21624.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 3_1_33FAA] Length = 995 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 211/826 (25%), Positives = 373/826 (45%), Gaps = 65/826 (7%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120 + V + + LR+ + + G+ +++ ++ +I + + E + + Sbjct: 166 EEVKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSAN 225 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI---- 176 + + +++ + + +L+ + ++ + + Sbjct: 226 LEFWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVAADTVAVAQASAISAADSLAA 285 Query: 177 -------SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN--------- 220 S S + + +P+ ++G +V Sbjct: 286 ALKGETASNSAAMEQMKKEHPLASVLQLNPNGYGSVVGYADYKDTAQVNQYLAMKEVKEM 345 Query: 221 ----------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 F R + + G + + + +KP V Sbjct: 346 LPKDLRLKWGVKAADFDKQGRIFELYAIKSTERNGRAPLEGDVITD-AKDEYDQFNKPCV 404 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 +S + GARR+ +T++N+GK +A+VLDG V +AP +N I G +QI+GNFT E Sbjct: 405 SMSMNTDGARRWAVLTKNNVGKAIAIVLDGYVYSAPNVNGEITGGHSQITGNFTPEVTKD 464 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLV 389 LA +L++G +P IV+E VG LG +SI +G + V L+L++++M +YG G+V Sbjct: 465 LANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMV 524 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +N TL +L+ A LT+ IAG+VL +G+AVD+N+L+ ER +EE R ++V Sbjct: 525 ANCALVVNFFFTLGILTSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKTVK 584 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 +L G+S A+S IFDSN+T++I ++LF+FG G +RGFA T+ + IL S FTA+ + R Sbjct: 585 AALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRI 644 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + + K ++ L + FM + + I F GL Sbjct: 645 VYEHFMNKDKWLNLTFTTGISKNL-MQNVNYNFMGMMKRSFTVFGAIIVICIISFFIRGL 703 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 IDF GG V + V+ VR L+ D G +R+ + Sbjct: 704 AQSIDFTGGRNFVVQFEQQVEPETVRDLLKKKITEDNVQAIALGTDKKTIRITTNYRINE 763 Query: 630 AQTRVLEMVKKKITEIVPLST---------------------IQNTEIVGPKISRELIRK 668 + +++ + + + I +++ VGP I+ ++ Sbjct: 764 ESPTIDSEIEEFLYQSLKDGNLLGEGTTLEIFIDRDNRVGGSIISSQKVGPSIADDIKTS 823 Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721 I V+ + +A+ +YI +RF+ +++GA L +D +G ++L F +E + T Sbjct: 824 AIWSVLFALVAIGLYILLRFRNVAYSVGATVALAVDTILIIGAYSLCYGWVPFSLEIDQT 883 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 + AVLT IGYS+NDKVV++DR+R+ LY + L + S+N TL R++ TS++ I Sbjct: 884 FIGAVLTAIGYSINDKVVIFDRIREFFGLYPKR-NRMQLFNDSLNTTLARTINTSLSTLI 942 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 +L + V GG I SFA M G+V+ SSIFIAAPI + Sbjct: 943 VLLCIFVLGGDSIRSFAFAMILGVVIGTLSSIFIAAPIAYLTMGNK 988 Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 83/176 (47%), Gaps = 3/176 (1%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 +IVGP + +E I +GI+ +++ I ++IY+ + + A L+++ TLG Sbjct: 482 QEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMVANCALVVNFFFTLGILT 541 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F ++ +A ++ +G +V+ V++Y+R ++ ++ + + + + Sbjct: 542 SFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKTVKAALADGYSNAFSAI 598 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++ + I+ + + +G I FA + GI+ + +++F+ + + Sbjct: 599 FDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRIVYEHFMNKDK 654 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 40/244 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAM------------------ 39 M+N ++ + ++ + + +F+ + + P Sbjct: 1 MQNKGFVKVFAVLLTLVCVFYLSFSFVTRYHMDKAAQDPKGEAHYLDSMQNEKVYLGSYT 60 Query: 40 ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95 + I LGLDL+GG +++LEV D V +DE + K Q Sbjct: 61 LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKTDEAFN--KAVAEASKQSITSQ 118 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + F K+ K+ K + +++ E+ VL + Sbjct: 119 DDFITLFVKEYKKQAPNGKLAELFAT------QQLKDKVTTRSSDSEVEKVLREE----- 167 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 + AI+ S ++R RID+ G+++ IQ RI+++LPG ++P R+R+LL +A + Sbjct: 168 VKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSANLE 227 Query: 214 FHKV 217 F + Sbjct: 228 FWET 231 >gi|218264587|ref|ZP_03478382.1| hypothetical protein PRABACTJOHN_04088 [Parabacteroides johnsonii DSM 18315] gi|218221895|gb|EEC94545.1| hypothetical protein PRABACTJOHN_04088 [Parabacteroides johnsonii DSM 18315] Length = 1004 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 213/826 (25%), Positives = 383/826 (46%), Gaps = 67/826 (8%) Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQ 120 D + + + LR+ + + G+ ++++ +I + + E + + Sbjct: 168 KDELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227 Query: 121 GVNSKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + + + L+ + + + +E + E++ ++ Sbjct: 228 LEFWETYDLPEIYQQLVAADNMLATILKSDDTAAEGSETTTVEATSEVVADNAAAETTND 287 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + + Q +L A + G + G+ +D Sbjct: 288 ADSLLAKIGEDKPEAQAAQSMEEFAKLHPLFA-VLQINQYNGQLASGPVVGIADKKDMAK 346 Query: 239 NQYLVE---------------------------------------DKVEISGIHLNGATA 259 + + G + A A Sbjct: 347 IDEYLNMKQVKDLLPRNLSLKWGVKAIDEKEQFFYLYAIKKTNRDGTPALGGDVVTDANA 406 Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 +F + + VVD+ + GA+ + +T++NIGK +A+VLD V +AP + I G++ Sbjct: 407 DFVQQAGRSEQVVDMVMNAEGAKAWARLTKENIGKAVAIVLDDMVYSAPNVQVEITGGRS 466 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QI+G+FT E A LA +L++G + ++IV+E VG LG ++I G + V LVL++ Sbjct: 467 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINSGVISFVLALVLLMF 526 Query: 378 FMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 +M YG GL+AD ++ LN+ T+ +L+ A LTLP IAG+VL +G+AVD+N+L+ E Sbjct: 527 YMCAFYGVLPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 586 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 R +EE R +S+ ++ G+S A+S IFDSN+T++I VVLF+FG G +RGFA TM + + Sbjct: 587 RTKEELRAGKSLSKAIADGYSNAFSAIFDSNLTSIITGVVLFYFGTGPIRGFATTMIIGL 646 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 S TA+ + R + ++ K+K++ L+ I F+ AR G I ++ Sbjct: 647 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSITKDLL-TNPKINFLGARKVGYLIPVVI 705 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + T GLN GIDF GG + + V VR+ L++ G +S Sbjct: 706 IVLGAISMSTIGLNNGIDFTGGRNYVIRFAQDVKTDEVRNLLDAQLDGSVSVIQIGTPDQ 765 Query: 617 FLVRLQYQPGDS------VAQTRVLEMVKKKITEIVP-----LSTIQNTEIVGPKISREL 665 V Y+ D+ + ++ E VK + E IQ+++ VGP ++ ++ Sbjct: 766 VRVSTNYKIEDNDPAIDQEIENKLFEGVKSLLPEGTTLAQFTDQYIQSSQKVGPSMADDI 825 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718 + V+ + M YI +RF+ F++GA ++ + + F+ L F +E Sbjct: 826 KNAAFLAVVFAMFCMAAYILLRFRDISFSVGAFASVAVTTLCIISFYTLLWKVLPFSMEV 885 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + T +AA+LT+IGYS+ND VVV+DR+R+ + LY + +I+ ++N TL R+ TS+ Sbjct: 886 DQTFIAAILTIIGYSINDTVVVFDRIRETIGLYPKRDRY-QVINDALNSTLSRTFNTSLT 944 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + VL + + GG+ I SF + GI++ S++F+A PI + Sbjct: 945 TLVVVLCIFILGGATIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 990 Score = 70.1 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 66/399 (16%), Positives = 134/399 (33%), Gaps = 46/399 (11%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43 M+N ++ + ++ + + +F+ + S + P Sbjct: 1 MQNKGFVKVFAVLLTLVCMFYLSFSFVTRHYNSKATEYAGGDPVKESSYLDSLSTQKVWL 60 Query: 44 -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 ISLGLDL+GG ++VLE++ D + D +F K + + Sbjct: 61 GYTLKECREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYENQA 118 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 Q FA+ K + +++ + K + +++ ++ VL Sbjct: 119 ASQKDFIDLFAEEYKKLDNGARLSAIFSTF------ELKDKITPQSSDAQVIAVL----- 167 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + AI+ S ++R RID+ G+ IQR + RIL++LPG ++P R+R+LL +A Sbjct: 168 KDELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F + ++ D+ L D G A + + Sbjct: 228 LEFWETYDL----PEIYQQLVAADNMLATILKSDDTAAEGSETTTVEATSEVVADNAAAE 283 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + D + ++ ++ + Q SG Sbjct: 284 TTNDADSLLAKIGEDKPEAQAAQSMEEFAKLHPLFAVLQINQYNGQLASGPVVGIADKKD 343 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370 A + ++ + RN+ G +I + Sbjct: 344 MAKIDEYLNMKQVKDLLPRNLSLKWGVKAIDEKEQFFYL 382 >gi|303236693|ref|ZP_07323274.1| export membrane protein SecD [Prevotella disiens FB035-09AN] gi|302483197|gb|EFL46211.1| export membrane protein SecD [Prevotella disiens FB035-09AN] Length = 1004 Score = 336 bits (861), Expect = 9e-90, Method: Composition-based stats. Identities = 209/843 (24%), Positives = 380/843 (45%), Gaps = 75/843 (8%) Query: 61 DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIAD 113 D + + + D +R+ + + G+ ++++ + ++ + R E + Sbjct: 157 DVEKALREEVTASIDNSYNVVRNRIDQFGVVQPNIQKLEGQEGRLMVEMPGIREPERMRK 216 Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 + + + + +T ++ ++ + + + + +Q + + + Sbjct: 217 LLQGSANLEFWETYNNQEIAPYLTQLDQRLANGETSVSANDTAKTSTKQVAKA-NKPAGK 275 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS------------------FH 215 + + I + + + +P L +S H Sbjct: 276 LSLKGGKIGAKNENNAQMAAAKKANPLLSMLQLIPGDALSVVGYASVRDTAAINKLIYSH 335 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNGATANFDPKT 265 + D + + E + + G + A FD Sbjct: 336 LAQQVLPSDLRLRWSAKPADGLQQKNVFELHALKVTTSDGRAPLEGDVITDAKDQFDQYG 395 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 +P V ++ + GAR++ +T+ N+GK +A+VLDG V T+P IN I G++ ISG+FTI Sbjct: 396 -RPEVSMTMNSDGARQWAAITKANLGKAVAIVLDGLVYTSPRINSEITGGQSSISGSFTI 454 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-G 384 E LA L++G +P IV+E VG LG+ SI +G + VL++++M+++Y Sbjct: 455 EDTKDLANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGLMSFAIASVLLMIYMVLMYDV 514 Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444 G++A+ ++ N+ TL +L+ + LT+P IAGIVL +G AVD+N+L+ ERI+EE R Sbjct: 515 VPGMLANVALLANLFFTLGILASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEEMRA 574 Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504 + + +L G+S A+S IFDSN T+LI ++L G G +RGFA T + I+ S FTA+ Sbjct: 575 GKGIKDALQAGYSNAFSAIFDSNFTSLITGIILLVTGTGPIRGFATTWIIGIVCSFFTAV 634 Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564 + R + ++ K + L+ + + + I + +L Sbjct: 635 FLTRLVYENRLKKDKWLKQKFHTSFSKNLMQNTRYKFMSMYKTTFSISIVAAIIFLVSIL 694 Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ---------------------- 602 F GL+ IDF GG + N+ V + VR L + Sbjct: 695 FVRGLSKSIDFTGGRNYVITLNKKVHVEDVRKVLGNAFVNTIGENKGKAATTNVIALGTE 754 Query: 603 -------IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 N E + + Y + K +I +I ++ Sbjct: 755 GNTIRVSTNYNIESNDPAEDDHAETVLYTALKKGGFVSQANVESFKNPDIREGGSIISSA 814 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL- 713 VGP +++++ ++ V ++ I + +YI +RF+ F+ G+I L D +GF+++ Sbjct: 815 KVGPSVAKDITHGAMISVALALIFIFLYILLRFRNIGFSFGSIVALAFDTLVVVGFYSVC 874 Query: 714 -----FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 F +E + T + A+LT+IGYS+NDKVVV+DR+R+NMKL+ ++ L + SIN+T Sbjct: 875 YGWIGFSLEIDQTFIGAILTVIGYSINDKVVVFDRIRENMKLHPKK-DYQTLFNDSINQT 933 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TS + I ++ + V GG I SFA M G+ SSIFIA+P+ + + Sbjct: 934 LARTINTSFSTLIVLISIFVLGGDSIRSFAFAMILGVFFGTLSSIFIASPVAYLVLGRKI 993 Query: 829 KNA 831 +N Sbjct: 994 ENR 996 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 85/180 (47%), Gaps = 7/180 (3%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E+VGP + + I++G++ I+++ ++IY+ + + + A L+ ++ TLG A Sbjct: 477 QEEVVGPTLGAQSIQQGLMSFAIASVLLMIYMVLMYDVVPGMLANVALLANLFFTLGILA 536 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + +A ++ +G +V+ V++Y+R+++ M+ +D + + Sbjct: 537 SFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEEMRA---GKGIKDALQAGYSNAFSAI 593 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ + I+ + + V G I FA GIV S F A + +Y+ R K + Sbjct: 594 FDSNFTSLITGIILLVTGTGPIRGFATTWIIGIVC----SFFTAVFLTRLVYENRLKKDK 649 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 99/279 (35%), Gaps = 38/279 (13%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41 M+N ++ + ++ + + + Sbjct: 1 MQNKGLVICVAVLLTLASIFYLSFSVATSYYDSQAAKIKDPIAQQDYKDSVKYLGIYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG +++LE+ D V+ +D ++LK Q+ Sbjct: 61 KCLETQIGLGLDLKGGMNVILEISVPDVVDVLADHKTDA--AYLKSMKEAKEQETTSQSD 118 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 F D+ K K+ +L + + + ++ Sbjct: 119 FITLFIDAFHKNAPGRKLAEVF--ATQQLKGKVTTQSSDKD---------VEKALREEVT 167 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 +I+ S ++R RIDQ G+ + IQ+ R+++++PG ++P R+R+LL +A + F Sbjct: 168 ASIDNSYNVVRNRIDQFGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEFW 227 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254 + N ++ + + D + S + Sbjct: 228 ETYNNQEIAPYLTQLDQRLANGETSVSANDTAKTSTKQV 266 >gi|260593423|ref|ZP_05858881.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella veroralis F0319] gi|260534699|gb|EEX17316.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella veroralis F0319] Length = 981 Score = 336 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 207/842 (24%), Positives = 377/842 (44%), Gaps = 72/842 (8%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112 D + + + D + + + + G+ ++++ + ++ + R E + Sbjct: 131 ADVEKALREEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMR 190 Query: 113 DKVTLFLQGVNSKLN----------------------VDPKKNLLVTTTEKEISIVLSQN 150 + + D + L+ N Sbjct: 191 KLLQGSANLEFWETYNSQEVAPYLAQLDQRLANGDSKSDATAKDSTKAVKPNKDAKLTLN 250 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 + M +++ + + ++ S + ++L Sbjct: 251 AGKTAATSTESAQMAAAKKQHPLLSMLQTVPGEGLSLVGYANVRDTAAINKLIHSQLAKQ 310 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKPV 269 + + L ++K + + + + + + G + A FD +P Sbjct: 311 VLPSNLKLLWSAKSAEGLQQKNVYALHALKVTTSDGRAPLEGDVVTDAKDQFDQFG-RPQ 369 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V ++ + GAR + +T+ N+GK +A+VLDG V +AP ++ I G++ ISGNFTIE Sbjct: 370 VSMTMNSEGAREWAALTKANVGKAIAIVLDGVVYSAPRVDGEITGGQSSISGNFTIEDTK 429 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGL 388 LA L++G +P IV+E VG LG+ SI++G + VL++L+MI++Y G+ Sbjct: 430 DLANTLKSGRMPAPAKIVQEEVVGPTLGAQSIHQGLVSFAIAFVLLMLYMILMYNFIPGM 489 Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448 +A+ ++ N+ TL +L+ + LT+P IAGIVL +G AVD+N+L+ ERI+EE + + + Sbjct: 490 MANLALLANLFFTLGVLASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELKLGKGM 549 Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508 +L G+S A+S IFDSN+T+LI V+L G G +RGFA T + ++IS FTA+ + R Sbjct: 550 KQALKEGYSNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTWIIGLVISFFTAVFLTR 609 Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 + + K ++ + F+ I + + I G Sbjct: 610 IIFENRVGKDKWLNLTFTTGISKNF-MQDKSHHFLSMYKTTFAIWGIAVLVCIGSFVVRG 668 Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG-----------------DISFQNF 611 L+ IDF GG V N+P + VR + I + Sbjct: 669 LSRSIDFTGGRNYVVTLNKPTQVEDVRKVMTGAFINTVGENAGKPATTSVIALGTDGKTV 728 Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKK------------KITEIVPLSTIQNTEIVGP 659 N+ + D A+T + +KK K +I +I + VGP Sbjct: 729 RISTNYNIDSNDPMEDDKAETILYNALKKGGFVSQTNVANFKNPDIREGGSIIQSAKVGP 788 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL----- 713 I++ + + V+++ + +YI +RF+ F++G+I L+LD T +G F+L Sbjct: 789 SIAKNITYNAFMSVLLAIFFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGCFSLCYGWI 848 Query: 714 -FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETL 769 F +E + T + A+LT+IGY +ND VVVYDR+R+N++ + + + + SIN+TL Sbjct: 849 GFSLEIDQTFIGAILTVIGYDINDTVVVYDRIRENLRKHKHNLAKADIQKIFNDSINQTL 908 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ TS++ I ++ + + GG I SF+ M GI++ SSIFIA+P+ + + + Sbjct: 909 SRTINTSVSTLIVLVSIFILGGDSIRSFSFAMIIGIIIGTLSSIFIASPVAYLVLGKKIE 968 Query: 830 NA 831 Sbjct: 969 RR 970 Score = 62.8 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 85/190 (44%), Gaps = 17/190 (8%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQNKIT 99 + +I LGLDL+GG ++VLE+ D V+ D + + + + ++ + Sbjct: 39 ETQIGLGLDLKGGMNVVLEISVPDVVDVLADHKQDVAYQKAMAEAKEEEMTSQKDFISLF 98 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 + + KV + K + +++ + + + + ++ A Sbjct: 99 I---------DAYHKVAPGHKLAEVFATQQLKGKVTTQSSDAD-----VEKALREEVASA 144 Query: 160 IEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 I+ S ++ RIDQ G+ + IQ+ R+++++PG ++P R+R+LL +A + F + Sbjct: 145 IDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEFWET 204 Query: 218 LPNNSKKGFM 227 + ++ Sbjct: 205 YNSQEVAPYL 214 >gi|325299598|ref|YP_004259515.1| protein-export membrane protein SecD [Bacteroides salanitronis DSM 18170] gi|324319151|gb|ADY37042.1| protein-export membrane protein SecD [Bacteroides salanitronis DSM 18170] Length = 997 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 204/839 (24%), Positives = 375/839 (44%), Gaps = 69/839 (8%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112 + + + +Q D LR+ + + G+ +++ +I + + E + Sbjct: 158 AEVERALREEVQAAIDNSYNVLRTRIDRFGVVQPNIQPLEGTMGRIMVELPGIKEPERVR 217 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL------------------SQNNIDQ 154 + + + ++ + ++ + + ++ + Sbjct: 218 NLLQGSANLEFWETYEAKDIVPVLVSADERARVAMNLTSDTVKVEETVAAAEETEAVSSK 277 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 A+ + + ++ + + + + + ++ Sbjct: 278 DSLAAVLKGETVDNNAVNLEQLKKEHPLLAVFQPNQSGIGAIVGYADYKDTASINTVLNM 337 Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNGATANFDPK 264 +V + + D D ++ E + + G + A ++D Sbjct: 338 KEVKEIMPRDLKLMWGVKASDIDKTGHIFELYAIRVTERNGRAPLEGDVITDARDSYDQF 397 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 P V +S + G+RR+ +T+ NIGK +A+VLDG V +AP +N I G ++I+GNFT Sbjct: 398 NK-PCVTMSMNTDGSRRWAALTKKNIGKEIAIVLDGYVYSAPRVNTEITGGNSEITGNFT 456 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E LA +L++G +P IV+E VG LG SI +G + V L+ ++ ++ ++YG Sbjct: 457 PEVTKDLANVLKSGKMPAPARIVQEDIVGPSLGQQSINQGLISFVVALIALMAYLCLMYG 516 Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 G+VA+ ++ LN T+ ++S A LTL IAGIVL + +AVD+N+L++ER +EE + Sbjct: 517 FIPGMVANTALVLNFFFTMGIMSSFQAALTLSGIAGIVLSLAMAVDANVLIHERTKEELK 576 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 +++ ++ G+S A+S IFDSN+T++I V+LF+FG G +RGFA T+ + I+ S FTA Sbjct: 577 AGKNMKEAISAGYSGAFSAIFDSNLTSIITGVILFYFGTGPIRGFATTLIIGIICSFFTA 636 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + I R + + + K++++ + L FM I + I Sbjct: 637 VYITRLIYEYFLSKGKLRNLTFSTSLSKNL-FQNAHYNFMGITKRSFTIWGTIIVICIIS 695 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 GL+ IDF GG V ++ V +R LE+ G +R+ Sbjct: 696 FAVRGLSQSIDFTGGRNFVVQFDKVVQPETIRDLLENKVEDANIQAIALGTDGHRIRVST 755 Query: 624 QPGDSVAQTRVLEMVKKKI---------------------TEIVPLSTIQNTEIVGPKIS 662 V ++ + + +I +++ VGP ++ Sbjct: 756 NYRIEEDGAHVDTEIEGILYEAFKEGNLLPDGLTLAQFIDRDNTEGCSIISSQKVGPSMA 815 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715 ++ + VI + IA+ +YI IRF F+LGA L +D +G ++L F Sbjct: 816 DDMRTSAVWAVIFAVIAIGLYILIRFSNIAFSLGATVALAIDAFLVVGAYSLCYGWMPFS 875 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 +E + T + AVLT+IGYS+NDKVV++DR+R+ LY + L + ++N TL R++ T Sbjct: 876 LEVDQTFIGAVLTVIGYSINDKVVIFDRVREFTHLYPNR-NRTQLFNDALNTTLARTLNT 934 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI--YDWRAKNAR 832 + I +L + GG I SF+ M G+V+ SS+F+AAP+ K A+ Sbjct: 935 GQSTLIVLLIIFFLGGDSIRSFSFAMILGVVIGTFSSLFVAAPVAYLALGGKKDEKEAK 993 Score = 129 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 89/181 (49%), Gaps = 7/181 (3%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 +IVGP + ++ I +G++ +++ IA++ Y+ + + + + A T L+L+ T+G + Sbjct: 480 QEDIVGPSLGQQSINQGLISFVVALIALMAYLCLMYGFIPGMVANTALVLNFFFTMGIMS 539 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F L+ +A ++ + +V+ V++++R ++ +K + ++ I + Sbjct: 540 SFQAALTLSGIAGIVLSLAMAVDANVLIHERTKEELKA---GKNMKEAISAGYSGAFSAI 596 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++ + I+ + + +G I FA + GI+ S F A I IY++ + Sbjct: 597 FDSNLTSIITGVILFYFGTGPIRGFATTLIIGIIC----SFFTAVYITRLIYEYFLSKGK 652 Query: 833 I 833 + Sbjct: 653 L 653 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 60/365 (16%), Positives = 123/365 (33%), Gaps = 44/365 (12%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPS--------------AM---- 39 M+N ++ + ++ + + +F+ + + P + Sbjct: 1 MQNKGFVKVFAILLTLVCVFYLSFSFVTRYHMNKAAEDPKGEAHYLDSMMNKKVWLGSYT 60 Query: 40 ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95 + I LGLDL+GG +++LEV D V DE + E + + Sbjct: 61 LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKPDEAFNKAVAE-AAKQQVTSQE 119 Query: 96 NKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154 + ITL V + + V + KL L + + + + Sbjct: 120 DFITL-------------FVREYKRLVPDGKLAELFATQQLKEKVNTRSTDAEVERALRE 166 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 + AI+ S ++R RID+ G+ + IQ RI+++LPG ++P R+R LL +A + Sbjct: 167 EVQAAIDNSYNVLRTRIDRFGVVQPNIQPLEGTMGRIMVELPGIKEPERVRNLLQGSANL 226 Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272 F + + N KVE + A + V+ Sbjct: 227 EFWETYEAKDIVPVLVSADERARVAMNLTSDTVKVEETVAAAEETEAVSSKDSLAAVLKG 286 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 + A ++ +++ + + ++ A A I+ ++ + Sbjct: 287 ETVDNNAVNLEQLKKEHPLLAVFQP--NQSGIGAIVGYADYKDTASINTVLNMKEVKEIM 344 Query: 333 AMLRA 337 Sbjct: 345 PRDLK 349 >gi|198274046|ref|ZP_03206578.1| hypothetical protein BACPLE_00183 [Bacteroides plebeius DSM 17135] gi|198273124|gb|EDY97393.1| hypothetical protein BACPLE_00183 [Bacteroides plebeius DSM 17135] Length = 997 Score = 335 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 205/838 (24%), Positives = 367/838 (43%), Gaps = 69/838 (8%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIA 112 + + + + D LR+ + + G+ +++ ++ +I + + E + Sbjct: 158 AEVEKVLREEVSAAVDNSFNVLRTRIDRFGVAQPNIQTLEGKMGRIMVELPGIKEPERVR 217 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS--------------- 157 + + ++ + + +L+ + Sbjct: 218 KLLQGSANLEFWETFEAKDIVPVLASADNRARGLLNADAPADSAMVEADTTAVAEASAVS 277 Query: 158 -----------HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 S I + + + ++ +D + + ++L Sbjct: 278 AKDSLAAALKGETATASNTNIEELKKEHPLLAVLQLNQSGVGCIVGYADYKDTADVNRIL 337 Query: 207 GTTAKMSFHKVLPNNS----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 A R + + G + + Sbjct: 338 NMKAVKEVMPRDLKLMWGVKASDMDKTGRIFELYAIKSTERNGRAPLEGDVVTD-AKDEY 396 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + +KP V +S + G+RR+ +T+ NIGK +A+VLDG V +AP +N I G +QI+GN Sbjct: 397 DQFNKPCVSMSMNTEGSRRWAALTKKNIGKEIAIVLDGYVYSAPRVNSEITGGNSQITGN 456 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 FT E LA +L++G +P IV+E VG LG +SI +G + + L++++++M + Sbjct: 457 FTPEVTKDLANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIVSFIVALIVLMIYMCAM 516 Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 YG G+VA+ ++F+N TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE Sbjct: 517 YGFIPGMVANGALFINFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 576 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 R + +L G+ A+S IFDSN+T++I ++LF FG G +RGFA T+ + IL S F Sbjct: 577 LRAGKGTKQALAEGYKNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILCSFF 636 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561 +A+ + R + + K ++ L + FM I + + I Sbjct: 637 SAVFLTRLVYEHFMNKDKWLNLTFTTGISKNL-MQNVHYNFMGITKRSFTIWGVIIVVCI 695 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 F GL IDF GG V + V VRS L+ G +R+ Sbjct: 696 ISFFVRGLAQSIDFTGGRNFVVQFEQVVQPETVRSLLQPKVGDANVQAIALGTDGKTIRV 755 Query: 622 QYQPGDSVAQTRVLEMVKKKI---------------------TEIVPLSTIQNTEIVGPK 660 + + +++ + + +I +++ VGP Sbjct: 756 TTNYRINEDSPTIDAEIEEFLYNALKEGNLLGEGTTLEIFIDRDNRAGGSIISSQKVGPS 815 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------ 713 I+ ++ + V+++ IA+ +YI IRF F++GA L++D +G ++L Sbjct: 816 IADDIKTSAVWSVVLALIAIGLYILIRFNNIAFSIGATVALMVDTVLIIGAYSLCYGWMP 875 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 F +E + T + A+LT IGYS+NDKVV++DR+R+ + LY L + S+N TL R++ Sbjct: 876 FSLEIDQTFIGAILTAIGYSINDKVVIFDRVREFIGLYPKR-DRTQLFNDSLNTTLARTI 934 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 TS++ I +L + + GG I SFA M G+V+ SS+F+AAP+ + Sbjct: 935 NTSLSTLIVLLSIFILGGDSIRSFAFAMILGVVIGTLSSLFVAAPVAYLTMGHKMPKQ 992 Score = 70.1 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 59/364 (16%), Positives = 121/364 (33%), Gaps = 40/364 (10%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPS-----------------AM---- 39 M+N ++ + ++ +F+ + +++ + Sbjct: 1 MQNKGFVKVFAVLLTLACAFYLSFSFVTRYQMNKAAEDPKGSAHYLDSMQNQKVWLGIYT 60 Query: 40 ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95 + I LGLDL+GG +++LEV D V DE + E + + Sbjct: 61 LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKPDEAFNKAVAE-AAKLQINSQE 119 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + ITL + K+ + K + +T+ E+ VL + Sbjct: 120 DFITLFIRE-------YKKLAPEGKLAELFATQQLKDKVNTRSTDAEVEKVLREEVSA-- 170 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 A++ S ++R RID+ G+++ IQ RI+++LPG ++P R+R+LL +A + Sbjct: 171 ---AVDNSFNVLRTRIDRFGVAQPNIQTLEGKMGRIMVELPGIKEPERVRKLLQGSANLE 227 Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273 F + + N D + A A+ + Sbjct: 228 FWETFEAKDIVPVLASADNRARGLLNADAPADSAMVEADTTAVAEASAVSAKDSLAAALK 287 Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333 + A LAV+ + ++ A A ++ ++ + Sbjct: 288 GETATASNTNIEELKKEHPLLAVLQLNQSGVGCIVGYADYKDTADVNRILNMKAVKEVMP 347 Query: 334 MLRA 337 Sbjct: 348 RDLK 351 >gi|154491889|ref|ZP_02031515.1| hypothetical protein PARMER_01516 [Parabacteroides merdae ATCC 43184] gi|154088130|gb|EDN87175.1| hypothetical protein PARMER_01516 [Parabacteroides merdae ATCC 43184] Length = 1004 Score = 335 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 209/826 (25%), Positives = 379/826 (45%), Gaps = 67/826 (8%) Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQ 120 + + + + LR+ + + G+ ++++ +I + + E + + Sbjct: 168 KEELKSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227 Query: 121 GVNSKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + + + L+ + + AIE + E++ ++ Sbjct: 228 LEFWETYNLPEIYQQLVAADNMLATILKSDDTAAVGSDTTAIEATEEVVADNAAAETTND 287 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + + + + A + G + G+ +D Sbjct: 288 ADSLLAKIGEDKPEAQAAKSMEEFAKQHPLFA-VLQINQYNGQLAPGPVVGIADKKDIAK 346 Query: 239 NQYLVE---------------------------------------DKVEISGIHLNGATA 259 + + G + A A Sbjct: 347 INEYLNMKQVKDILPRNLSLKWGVKAIDEKEQYFYLYAIKMTNRDGTPALGGDVVTDANA 406 Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 +F + + V ++ + GA+ + +T++NIGK +A+VLD V +AP + I G++ Sbjct: 407 DFVQQAGRSEQQVSMTMNAEGAKAWARLTKENIGKAVAIVLDDMVYSAPNVQVEITGGRS 466 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QI+G+FT E A LA +L++G + ++IV+E VG LG ++I G + V L+L++ Sbjct: 467 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINSGVISFVLALILLMF 526 Query: 378 FMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 +M YG GL+AD ++ LN+ T+ +L+ A LTLP IAG+VL +G+AVD+N+L+ E Sbjct: 527 YMCAFYGVLPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 586 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 R +EE R +S+ ++ G+S A+S IFDSN+T++I VVLF+FG G +RGFA TM + + Sbjct: 587 RTKEELRAGKSLNKAIADGYSNAFSAIFDSNLTSIITGVVLFYFGTGPIRGFATTMIIGL 646 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 S TA+ + R + ++ K+K++ L+ I F+ AR G I Sbjct: 647 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSITKDLL-TNPKINFLAARKVGYLIPAGI 705 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + T GLN GIDF GG + + V VR+ L++ G +S Sbjct: 706 IVLGAISMSTIGLNNGIDFTGGRNYVIRFAQDVKTDEVRNLLDAQLDGSVSVIQIGTPDQ 765 Query: 617 FLVRLQYQPGDS------VAQTRVLEMVKKKITEIVP-----LSTIQNTEIVGPKISREL 665 V Y+ D+ + ++ E VK + E IQ+++ VGP ++ ++ Sbjct: 766 VRVSTNYKIEDNDPAIDQEIENKLFEGVKSLLPEGTTLAQFTDQYIQSSQKVGPSMADDI 825 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718 + V+ + M YI +RF+ F++GA ++ + + F+ L F +E Sbjct: 826 KNAAFLAVVFAMFCMAAYILLRFRDISFSVGAFASVAVTTLCIISFYTLLWKVLPFSMEV 885 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + T +AA+LT+IGYS+ND VVV+DR+R+ + LY + +I+ ++N TL R+ TS+ Sbjct: 886 DQTFIAAILTIIGYSINDTVVVFDRIRETIGLYPKRDRY-QVINDALNSTLSRTFNTSLT 944 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + VL + + GG+ I SF + GI++ S++F+A PI + Sbjct: 945 TLVVVLCIFILGGATIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 990 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 65/399 (16%), Positives = 133/399 (33%), Gaps = 46/399 (11%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43 M+N ++ + ++ + + +F+ + S + P Sbjct: 1 MQNKGFVKVFAVLLTLVCMFYLSFSFVTRHYNSKAAEYAGGDPVKESSYLDSLSTQKVWL 60 Query: 44 -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 ISLGLDL+GG ++VLE++ D + D +F K + + Sbjct: 61 GYTLKECREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYENQA 118 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 Q FA+ K + +++ + K + +++ ++ VL Sbjct: 119 TSQKDFIDLFAEEYKKLDNGARLSAIFSTF------ELKDKITPQSSDAQVIAVL----- 167 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + + AI+ S ++R RID+ G+ IQR + RIL++LPG ++P R+R+LL +A Sbjct: 168 KEELKSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F + ++ D+ L D G A + + Sbjct: 228 LEFWETYNL----PEIYQQLVAADNMLATILKSDDTAAVGSDTTAIEATEEVVADNAAAE 283 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + D + ++ + + Q G Sbjct: 284 TTNDADSLLAKIGEDKPEAQAAKSMEEFAKQHPLFAVLQINQYNGQLAPGPVVGIADKKD 343 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370 A + ++ + RN+ G +I + Sbjct: 344 IAKINEYLNMKQVKDILPRNLSLKWGVKAIDEKEQYFYL 382 >gi|229543713|ref|ZP_04432773.1| protein-export membrane protein SecD [Bacillus coagulans 36D1] gi|229328133|gb|EEN93808.1| protein-export membrane protein SecD [Bacillus coagulans 36D1] Length = 727 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 185/678 (27%), Positives = 331/678 (48%), Gaps = 29/678 (4%) Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228 +RI+ +G+SE I G++RI +QL G +D + R++L TTA ++F V G Sbjct: 44 RRINALGVSEPQISVEGNNRIRVQLAGVKDQNEARKMLSTTANLTFRDVNDKVMMDGTDL 103 Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + S + + + + + + Sbjct: 104 VQGKAKQSFDQNGKP--------DVVLQLKSRKKFADVTKKILAMAPNNQLVIWMDFQKG 155 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 + K + + L+ P +N + + + +I+GNFT++ A LA +L AG+LP+KL+ + Sbjct: 156 DSYKKEVAKKNPKFLSNPSVNSVLNTDQVEITGNFTVKEASNLADLLNAGALPVKLHEIY 215 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 +VGA G ++++ A + G+ I LFMI Y G +A ++ + + L L + L+ Sbjct: 216 STSVGASFGQEALHDTILAGIIGVAAIFLFMIGYYRFPGFIACITLSVYIFLILLIYRLM 275 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA LTLP IA +VLG+G+AVD+NI+ ERI+EE R +SV + G ++ IFDSN+ Sbjct: 276 GAVLTLPGIAALVLGVGMAVDANIITYERIKEELRVGKSVKSAFRAGNKSSFVAIFDSNL 335 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T ++A V+LF+FG ++RGFA T+ +SIL+S TA+ R ++ + +K Sbjct: 336 TTILAAVILFYFGTSSIRGFATTLIISILLSFLTAVYGSRWLLGLWVNSNFLKKRPHWFG 395 Query: 529 SRFFLIPDCI-------------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575 + I + F++ R IS + I LL LN IDF Sbjct: 396 VKKSAIHNIAENIDTHDLKTKFDWYDFVKHRNIFFTISAVLIIGGFILLSIFKLNLSIDF 455 Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635 G ++ V +N+ + ++ +L+ L + ++ V ++ + Sbjct: 456 SSGTRIEVSSNQALSQQEIQRDLDHLHLKSEDIVMQGTNRHHAVIRVKGSFSDKEKSTQI 515 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 + P + V P + +EL + ++++A+ ++IY+ RF+W + Sbjct: 516 NQYFTEKYGKSP-----SISSVSPTVGKELALSAVYSLLLAAVGIIIYVAFRFEWRMGVA 570 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM---KLYT 752 +I L D + FF++ +E ++T +AAVLT++GYS+ND +V +DR+R N+ + Sbjct: 571 SIVALFHDAFFMIAFFSITRLEVDVTFIAAVLTIVGYSINDSIVTFDRIRDNLNRRRKIK 630 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 T+ D+++ I +TL RSV T + ++ + +A++G I +F+I + G++ SS Sbjct: 631 TAKEIHDIVNAGIRQTLARSVNTVLTVLMTSVALAIFGSESIRNFSIALIVGLITGTYSS 690 Query: 813 IFIAAPILLFIYDWRAKN 830 IFIAA I + + K Sbjct: 691 IFIAAQIWFVLKKRQLKK 708 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 96/260 (36%), Gaps = 9/260 (3%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + + + + + + + + S + + + ++ Sbjct: 140 MAPNNQLVIWMDFQKGDSYKKEVAKKNPKFLSNPSVNSVLNTDQVEITGNFTVKEASNLA 199 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 +L + + VG +E + I+ II A+ +++ +++ Sbjct: 200 DLLNA-----GALPVKLHEIYSTSVGASFGQEALHDTILAGIIGVAAIFLFMIGYYRFP- 253 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 A TL + I L + L G L +AA++ +G +V+ ++ Y+R+++ +++ Sbjct: 254 GFIACITLSVYIFLILLIYRLMGAVLTLPGIAALVLGVGMAVDANIITYERIKEELRV-- 311 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 S + + +++ ++ + + +G S I FA + I+++ ++ Sbjct: 312 -GKSVKSAFRAGNKSSFVAIFDSNLTTILAAVILFYFGTSSIRGFATTLIISILLSFLTA 370 Query: 813 IFIAAPILLFIYDWRAKNAR 832 ++ + +L + R Sbjct: 371 VYGSRWLLGLWVNSNFLKKR 390 Score = 57.0 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 5/95 (5%) Query: 41 KNRISLGLDLRGGSHLVLEVDED----DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQ 95 +I+LGLDLRGG ++ +V+ L + L + G+ + + Sbjct: 2 SKKINLGLDLRGGFEVLYKVEPAKKGQKIDKAALADTAAALDRRINALGVSEPQISVEGN 61 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 N+I + A + + ++ +N Sbjct: 62 NRIRVQLAGVKDQNEARKMLSTTANLTFRDVNDKV 96 >gi|317504628|ref|ZP_07962595.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella salivae DSM 15606] gi|315664249|gb|EFV03949.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella salivae DSM 15606] Length = 996 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 213/831 (25%), Positives = 381/831 (45%), Gaps = 60/831 (7%) Query: 61 DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIAD 113 + + + +Q D +R+ + K G+ ++++ +I + + E + Sbjct: 157 EVEKVLRQEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRK 216 Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI-------------------DQ 154 + + + + + ++ S + + Sbjct: 217 LLQGSANLEFWETYNADEVIPYLQQLDSRLANDASNDTTAVKKAIKKADAKKVKLQLKNN 276 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 ++S + Q + + L+ +D + + +L+ Sbjct: 277 DDETPTQKSNAQMEAAKKQHPLLAMLQTTGQNSLALVGYASVRDTAAISKLIYGQTAKQI 336 Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVV 270 ++ G + + + G + A F+ T +P V Sbjct: 337 LPTDLKLLWSATPEDGIKAKNIYGLYAIKVSSSNGQAPLQGDVVVDAKDEFNHVTGQPEV 396 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 +++ + GARR+ +T+ N+GK +A+VLD V +AP +N I G + ISGNFT+E Sbjct: 397 NMTMNTEGARRWAALTKANVGKAIAIVLDNAVYSAPRVNGEIDGGSSAISGNFTVEMTKD 456 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389 LA L++G +P IV+E VG LG+ SI +G + VL++++M+++Y G++ Sbjct: 457 LANTLKSGRMPAPARIVQEEVVGPTLGAASIQQGIISFAIAFVLLIIYMVLMYNFIPGMI 516 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +NV TL +L+ A LT+ IAG+VL +G AVD+N+L+ ERI+EE R + + Sbjct: 517 ANAALIVNVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRAGKGMK 576 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 ++ G+S A+S IFDSN+T+LI V+L+ FG G ++GFA T + I+ S F+A+ + R Sbjct: 577 QAVAAGYSNAFSAIFDSNLTSLITGVILYVFGTGPIQGFATTWIIGIVCSFFSAVFLTRL 636 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + + + ++ L +FM I+IL ++ I F GL Sbjct: 637 VFEHQLNKDRWMNLKYWTSVSKNL-MQNKDYKFMSMYKGTFTIAILAAVVFIGSFFVRGL 695 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + IDF GG V +P + VR L + G + G N +R+ Sbjct: 696 SQSIDFTGGRNYVVQFEKPTEPEQVREVLTHVFPGCTTNALSLGTDNRTIRISTNYKIES 755 Query: 630 AQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKG 669 V + + K+ ++ +I ++ VGP +++++ Sbjct: 756 NSPTVDDEAESKLYQGLKQAGLVSQKSVQAFKNPDVRTGGSIISSSKVGPSVAKDVTYGA 815 Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG------IEFNLTA 722 I+ VII+ +A+ +YI IRF+ F+ G+ LI D +GFF+L +E + T Sbjct: 816 IISVIIALVAIFLYILIRFRNVAFSAGSTIALIFDALTVVGFFSLLQGLLPFSLEVDQTF 875 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 + AVLT+IGYS+NDKVVV+DR+R+N +L+ + + + SIN+TL R++ T + I Sbjct: 876 IGAVLTVIGYSINDKVVVFDRIRENFRLHPK-QDVQKVFNDSINQTLARTINTGFSTLIV 934 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ + + GG I FA M G+V SSIFIA+PI K+ R+ Sbjct: 935 LVVILLLGGKSIQPFAFAMTLGVVFGTLSSIFIASPIAYLFMGKTIKDRRL 985 Score = 68.2 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 94/265 (35%), Gaps = 38/265 (14%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41 M+N ++ ++ + + + Sbjct: 1 MQNKGIVICTAVLLTLASIFYLSFSVATGYYDSQAAKIKDPIARQDYKDSVKYLGIYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG +++LE+ D + +D +F+K Q+ Sbjct: 61 KCLETQIGLGLDLKGGMNVILEISVPDVLETLADHKTDP--AFVKSMKQARTEEETSQSD 118 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 F + ++ L + + + + Q + Sbjct: 119 FISLFVKYYHQNAPGHRLAELFAT-----------QQLQGKINPQSTDSEVEKVLRQEVQ 167 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++R RID+ G+ + IQ+ + RI++++PG ++P R+R+LL +A + F Sbjct: 168 AAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRKLLQGSANLEFW 227 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQ 240 + + ++ + +D + Sbjct: 228 ETYNADEVIPYLQQLDSRLANDASN 252 >gi|288803464|ref|ZP_06408896.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella melaninogenica D18] gi|288334074|gb|EFC72517.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella melaninogenica D18] Length = 1006 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 202/836 (24%), Positives = 369/836 (44%), Gaps = 69/836 (8%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120 + V + + + + + + G+ ++++ + ++ + R E + + Sbjct: 164 EEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSAN 223 Query: 121 GVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + N + L ++ + +++ + Sbjct: 224 LEFWETYNNQEITPYLTQLDQRLANGETKVDTAATDSTKKVQAKAAATPKFALNKNNAVK 283 Query: 179 STIQRLGSHRILIQ-----------------LPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221 ++ + + + +D + + +++ + Sbjct: 284 GEDAQMAALKKMHPLLSMLQTIPGDALSLVGYANVRDTAAINKMIYGSLAKQILPSDLKL 343 Query: 222 SKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 ++ G L + + + G + A +FD +P V ++ + Sbjct: 344 LWSAKPEDGLNKKNVYGLYALKITTSDGRARLEGDVVTTAKDDFDEHG-RPRVSMTMNSE 402 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337 GAR + +T+ N+GK +A+VLDG V +AP ++ I G++ ISGNFTIE LA L++ Sbjct: 403 GAREWAALTKANVGKAIAIVLDGVVYSAPRVDGEIAGGQSSISGNFTIEDTKDLANTLKS 462 Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFL 396 G +P IV+E VG LG+ SI +G + VL++L+MIV+Y G++A+ ++ Sbjct: 463 GRMPAPAKIVQEEVVGPTLGAQSIEQGLISFAIAFVLLMLYMIVMYNFIPGMMANLALIA 522 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 N+ TL +L+ + LT+P IAGIVL +G AVD+N+L+ ERI+EE + + + +L+ G+ Sbjct: 523 NLFFTLGVLASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELKLGKGMKQALNEGY 582 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 A+S IFDSN+T+LI V+L G G +RGFA T + I+IS FTA+ + R + + Sbjct: 583 GNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTWIIGIVISFFTAVFLTRLVFENRVS 642 Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576 K + F+ I + + I GL+ IDF Sbjct: 643 KDKWLNQTFTTGFSKNF-MQGKNYHFLSMYKTTFTIWGVAVLVCIVSFAVRGLSRSIDFT 701 Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQ-----------------------------IGDIS 607 GG V N+P + VR ++ Sbjct: 702 GGRNYVVTLNKPTHVEDVRKVMQGAFVNTVGENAGKPATTTVIALGTDGKTVRVSTNYNI 761 Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667 N E + + Y + K +I +I + VGP I++ + Sbjct: 762 DSNNPAEDDKAETILYNALKKGGFVSQASVQNFKNPDIREGGSIIQSAKVGPSIAKSITY 821 Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNL 720 I+ V+++ + +YI +RF+ F++G+I L+LD T +G F+L F +E + Sbjct: 822 NAIMSVLLAIFFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGCFSLCYGWIGFSLEIDQ 881 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSM 777 T + A+LT+IGY +ND VVVYDR+R+N+ + + + + SIN+TL R++ TS+ Sbjct: 882 TFIGAILTVIGYDINDTVVVYDRIRENLGKHKHNLAKADIQKIFNDSINQTLSRTINTSV 941 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF-IYDWRAKNAR 832 + I ++ + + GG I SF+ M GI++ SSIFIA+P+ + K+++ Sbjct: 942 STLIVLVSIFILGGDSIRSFSFAMIIGIIIGTLSSIFIASPVAYLVLGKKIEKHSK 997 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 90/266 (33%), Gaps = 38/266 (14%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41 M+N ++ + ++ + + + Sbjct: 1 MQNKGLVICVAILLTLASIFYLSFSVATSYYDGQAAKIKDPIAQQDYKDSVKYLGLYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG ++VLE+ D V+ D K Sbjct: 61 KCLETQIGLGLDLKGGMNVVLEISVPDVVDFLADHKQDAAYQ--KALETAKQEEMHSPKD 118 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 F D+ K+ K+ +L + + + ++ Sbjct: 119 FISLFVDAFHKDAPGHKLAEIF--ATQQLKGKVSTQSTDEE---------VEKALREEVA 167 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++ RIDQ G+ + IQ+ R+++++PG ++P R+R+LL +A + F Sbjct: 168 SAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEFW 227 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQY 241 + N ++ + + + Sbjct: 228 ETYNNQEITPYLTQLDQRLANGETKV 253 >gi|281421495|ref|ZP_06252494.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella copri DSM 18205] gi|281404567|gb|EFB35247.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella copri DSM 18205] Length = 1005 Score = 332 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 211/832 (25%), Positives = 376/832 (45%), Gaps = 71/832 (8%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122 V + + +R+ + K G+ ++++ Q +I + E + + Sbjct: 166 VQDAIDNSFNVVRTRIDKFGVVQPNIQKLEGQQGRIMVEMPGISQPERMRKMLQGSANLE 225 Query: 123 NSKLNVDPK-----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + + + L + + + E + ++ + I Sbjct: 226 FWETYNSEEIAPYLQQLDTRIANGDNGEEKTDSVAADSTVAKKEVAKAEPKKAEAKFSIK 285 Query: 178 ESTIQRLGSHRILIQ-----------------------LPGEQDPSRLRQLLGTTAKMSF 214 + +D + + +++ + Sbjct: 286 KKDDAASKVGEDAQNAAAIKAHPLLARLQLGGGLSTVGYASVRDTAAINKIIYSAVAKRV 345 Query: 215 HKVLPNNSKKGFMFGVRFLRDSDG----NQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 ++ + + G + A FD PVV Sbjct: 346 LPSDLRLLWSAKPADNLKAKNIFELHALKVTTTTGRAPLEGDVITDAKDEFDQMG-SPVV 404 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 + + GAR++ ++T+ N+GK +A+VLDG V +AP +N I G +QISGNFTIE Sbjct: 405 SMKMNTEGARKWAQMTKANVGKAIAIVLDGVVYSAPRVNGEIDGGSSQISGNFTIEDTKD 464 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389 LA L++G +P IV+E VG LG+ SI G + V VL++++M+++Y G++ Sbjct: 465 LANTLKSGRMPAPARIVQEEVVGPTLGAQSIQMGIVSFVVAFVLLMVYMVMMYNIIPGMM 524 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +NV TL +L+ A LTLP +AG+VL +G AVD+N+L+ ERI+EE R + + Sbjct: 525 ANLALLVNVFFTLGILTSFQAALTLPGLAGMVLSLGTAVDANVLIYERIKEELRSGKGMK 584 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 ++ G+ A+S IFDSN+T+LI V+L G G +RGFA T + I++S FTA+ + R Sbjct: 585 QAVAAGYGNAFSAIFDSNLTSLITGVILLTTGTGPIRGFATTWIIGIVVSFFTAVFLTRL 644 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + + + + K + +FM ++I+ ++ I F GL Sbjct: 645 VYDYKLNHDKWMH-CKFDTPVSHNLMQGKKYKFMSMYKTTFTVAIVAAVVFIGSFFVRGL 703 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG-------------EKN 616 + IDF GG V PV+ +R+ L + + G N Sbjct: 704 SKSIDFTGGRNYVVQFENPVEPEQIRTVLGDAFVNADGTKANTGAIAIGTDGKTIRVSTN 763 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKI------------TEIVPLSTIQNTEIVGPKISRE 664 +++ D A+T + +KK ++ +I ++ VGP ++++ Sbjct: 764 YMIESNSPTVDDEAETILYNALKKANLVSQKSVEAFKNPDVRQGGSIISSTKVGPSVAKD 823 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717 + I V+ + IA+ +YI +RF+ F++G+ L D +GF++L F +E Sbjct: 824 ITMGAIYSVLFALIAIFLYILVRFRNVAFSVGSTIALAFDALTVIGFYSLLWGLVPFSLE 883 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + T + A+LT++GYS+NDKVVV+DR+R+N+KL+ + L + SINETL R++ TS Sbjct: 884 IDQTFIGAILTVVGYSINDKVVVFDRIRENLKLHPKG-DRQQLFNASINETLARTINTST 942 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + + +L + + GG I SF+ M G+V SSIFIA+P+ + + K Sbjct: 943 STLLVLLCIFILGGDSIRSFSFAMILGVVFGTLSSIFIASPMAYIVLGRKIK 994 Score = 71.6 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 115/367 (31%), Gaps = 38/367 (10%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41 M+N ++ + ++ + +F + Sbjct: 1 MQNKGIVICVAVLLTLASIFYLSFSFATRYYDSEAAKIKDPIAQQDYKDSVKYLGVYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG +++LE+ D + +D F Sbjct: 61 NCLETQIGLGLDLKGGMNVILEISVPDVLENLADHKTDA--GFTNAMKEARAQEEANGGD 118 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 F ++ K KL L + S + I + Sbjct: 119 FVSLFINAYHK-----------SAPGHKLAEVFATQQLQGKVSPQSSDAEVEKAIRASVQ 167 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++R RID+ G+ + IQ+ RI++++PG P R+R++L +A + F Sbjct: 168 DAIDNSFNVVRTRIDKFGVVQPNIQKLEGQQGRIMVEMPGISQPERMRKMLQGSANLEFW 227 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 + + ++ + + N D V A +PK + I Sbjct: 228 ETYNSEEIAPYLQQLDTRIANGDNGEEKTDSVAADSTVAKKEVAKAEPKKAEAKFSIKKK 287 Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335 + A + E ++ +L L + S + + N I +A + Sbjct: 288 DDAASKVGEDAQNAAAIKAHPLLARLQLGGGLSTVGYASVRDTAAINKIIYSAVAKRVLP 347 Query: 336 RAGSLPI 342 L Sbjct: 348 SDLRLLW 354 >gi|196232267|ref|ZP_03131121.1| protein-export membrane protein SecD [Chthoniobacter flavus Ellin428] gi|196223635|gb|EDY18151.1| protein-export membrane protein SecD [Chthoniobacter flavus Ellin428] Length = 801 Score = 332 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 212/701 (30%), Positives = 358/701 (51%), Gaps = 39/701 (5%) Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGTTA 210 + ++Q+ME IR+R+DQ G+SE I G+ RIL+Q+PG + R+ L A Sbjct: 95 KDITKDMVDQAMEAIRKRVDQFGVSEPIITPQGTDRILVQIPGLDQGQIADAREQLKKVA 154 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY----------------LVEDKVEISGIHL 254 K+ FH V P + G L+++ ++ G + Sbjct: 155 KLEFHLVNPQSQALAQAIEAGVQPTPHGYTLVDTSMERNGKPVEGKLLIKNTADLLGSDV 214 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV-------VLDGRVLTAPV 307 A A + + V + F+ GA +F ++T + + V + Sbjct: 215 THAYAYY---DGQWGVALEFNSKGADQFAKLTAQVAREHSQMAILLDGKVQSAPTVDEKY 271 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 I G+AQISG E A L + I EER+ + LG D+I G A Sbjct: 272 ATAGIVGGRAQISGGSMSEKEARNLASALQNPLQTPVQIEEERSASSTLGQDAINSGITA 331 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427 + GLVL+++F+++ Y GLVA + +N+I+ +++ G LTLP IAG++L IGLA Sbjct: 332 GIGGLVLVLIFVVIYYRFAGLVAVVGLVINIIVLFGAMAMFGFVLTLPGIAGVILTIGLA 391 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ ER+REE +++ S++ + +A++ IFD+N T LI +LF+ G V+G Sbjct: 392 VDANVLIYERLREEMAAGKTLASSINAAYDKAFTVIFDANATTLITAAILFWQASGPVKG 451 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547 FA+T+ + I+ S+F+A+ + R + + ++ +K I + L + FM RF Sbjct: 452 FAVTLVVGIIASVFSAMVVTRMLFSWALKIGFLKRITMLHLISGQ------GVDFMSRRF 505 Query: 548 WGVGISILF-SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606 +GIS+ + I N GIDFKGG L + + +PV+++ +R ++E L+I D+ Sbjct: 506 LWIGISVTVAVVSMIGFAVRFPNNLGIDFKGGDLLMLKSVKPVEVADIRKHIEELKIEDV 565 Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666 + Q + + + S T K T + + VG + EL Sbjct: 566 AIQKETDPSSHSEFIAIR---SPIDTGDKIEAHLKETMPDTGFSEHKKDKVGKIVGGELA 622 Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 + ++ + + + + +Y+ +RF+ FA+GA+ L+ D+ T+G F++FG E +L V A+ Sbjct: 623 KSSLIALGLGMLGIFLYVTMRFEASFAVGALVALLHDVIITVGLFSIFGRELSLIMVGAI 682 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 LT+ GYS+ND +VVYDR+R+ + S + +++ SINETL R++ TS +SV + Sbjct: 683 LTIAGYSINDTIVVYDRIREGLHSGRRG-SIQSIMNASINETLSRTLLTSGCTLLSVAAL 741 Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++GG V+ FA + GIVV SSIFIA+PI+L+ + Sbjct: 742 YIFGGPVLHDFAFAILIGIVVGTYSSIFIASPIVLWWSGHK 782 >gi|325955438|ref|YP_004239098.1| protein-export membrane protein SecD [Weeksella virosa DSM 16922] gi|323438056|gb|ADX68520.1| protein-export membrane protein SecD [Weeksella virosa DSM 16922] Length = 964 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 196/824 (23%), Positives = 365/824 (44%), Gaps = 64/824 (7%) Query: 55 HLVLEVDEDDF-------VNGFLQMYSDELRSFLKKEGIGVFSMRQ----IQNKITLSFA 103 H+ ++ + + + S + + G+ +++ +I + Sbjct: 158 HVSYNASDEQVKAFIKKDIETKVATAYQVISSRIDQFGVVEPVVQRLGSEGDGRILVELP 217 Query: 104 DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163 + + + + ++ D + + + I ++ NI + Sbjct: 218 GVSDTDRVKKLLQSTAKLEFWQVVEDQQAIMAL------AGIGTAKYNISRDGRIVSNLG 271 Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223 ++ + + + + + + + + P+ +R F Sbjct: 272 EVLMPRMSNALTVVNLKDTAVVNRVLQDKEFKTLLPANVRNYK-------FAWASKPLDT 324 Query: 224 KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283 V L G E + + N T++PVV + ++ GA+ + Sbjct: 325 GVGGPKVLELFALKGKNGQNEPLIGGDKVVSASGERNAGSVTNEPVVSMQMNQEGAQEWA 384 Query: 284 EVTRDNIGKPLAVV-------LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 +T + LD V +AP I I G +QI+GNFT+E A LA +L+ Sbjct: 385 RITDELKPNQQFPRGQAVAIVLDNMVYSAPSIRGQITGGNSQITGNFTLEEAKDLANILQ 444 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AGSLP IV VG LG ++I A L++++MI Y + GL A+ ++ + Sbjct: 445 AGSLPASSKIVSAEVVGPSLGQEAINSSLIAFAVAFSLVLVWMIFYYSRAGLYANVALIV 504 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM-- 454 N++ + +L L ATL+LP IAGI+L + +D+NI++ ER++EE RK +S+ ++D Sbjct: 505 NLLFLMGMLVSLRATLSLPGIAGIILTLVTGMDANIIIYERVKEELRKGRSLRQAVDFAY 564 Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 + A+S IFD+N T+LI ++LF FG G V GFA T + I S FTA+ I R + Sbjct: 565 SWKGAFSAIFDANTTSLITAIILFIFGKGPVVGFATTFIIGIFTSTFTALFITRYFVE-- 622 Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574 + I + ++ + +SIL +I ++ +FT G + GI+ Sbjct: 623 -SRLEKGKSVAFFTPFTAHWLQNIRVDLLKTKKISYAVSILLTISALVSIFTQGFDLGIE 681 Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGD-----ISFQNFDGEKNFLVRLQYQPGDSV 629 FKGG V ++ VD + + +L ++ + D + + G + Y+ + Sbjct: 682 FKGGRTYTVRFDKTVDPTKIAESLGNVFVLDGEKMIPQVKTYGGNNQVKITTAYKADEDG 741 Query: 630 AQTRVL---------------EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 + + K +E + ++ VGP I+ + R I+ V Sbjct: 742 TEIDNEIKDKLYNGLQSYLPANLSVKDFSEDNASIGLMSSAKVGPTIADDTTRASILAVS 801 Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVL 727 ++ +A+ +Y+ I+F +W F+ I L D+ LG F+L F +E + +AA+L Sbjct: 802 LALVAIFVYLIIQFKRWQFSAATILALAHDVIIVLGVFSLLKGVLPFNMEIDQAFIAAIL 861 Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787 T+IGYS+ND +++ DR+R+N+ + + + D+I+ S +ETL R++ TS++ F+ VL + Sbjct: 862 TVIGYSMNDSIIILDRIRENLSV-EKNRNLYDIINISTSETLSRTINTSLSTFLIVLIIF 920 Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++GG I F G+V+ SSIF+A+P++ N Sbjct: 921 IFGGESIKGFMFAKLIGVVIGTFSSIFVASPLVYDFTKKGKMNK 964 Score = 118 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 34/252 (13%), Positives = 95/252 (37%), Gaps = 10/252 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + R ++ + ++ + G+ + + Sbjct: 386 ITDELKPNQQFPRGQAVAIVLDNMVYSAPSIRGQITGGNSQITGNFTLEEAKDLANILQA 445 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S I + E+VGP + +E I ++ ++ +L+++ + L A LI+ Sbjct: 446 GSLPASSKIVSAEVVGPSLGQEAINSSLIAFAVAFSLVLVWMIFYYS-RAGLYANVALIV 504 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 ++ +G +L +A ++ + ++ +++Y+R+++ ++ S R +D Sbjct: 505 NLLFLMGMLVSLRATLSLPGIAGIILTLVTGMDANIIIYERVKEELR---KGRSLRQAVD 561 Query: 763 KSIN--ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 + + + + I+ + + ++G + FA GI +S F A I Sbjct: 562 FAYSWKGAFSAIFDANTTSLITAIILFIFGKGPVVGFATTFIIGI----FTSTFTALFIT 617 Query: 821 LFIYDWRAKNAR 832 + + R + + Sbjct: 618 RYFVESRLEKGK 629 Score = 61.2 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 21/277 (7%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 I+LGLDL+GG +++L+V E D + + + L + N Sbjct: 69 AKNKEINLGLDLKGGINVILQVSERDLLVNLAGNKENPML--LTALDNTDRQQKTQGNVP 126 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN----IDQ 154 + D + +S S I + Sbjct: 127 YV------------DLFFQEFDKIRGGTKYASPDLFGTKANSAHVSYNASDEQVKAFIKK 174 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAK 211 I + + ++I RIDQ G+ E +QR G RIL++LPG D R+++LL +TAK Sbjct: 175 DIETKVATAYQVISSRIDQFGVVEPVVQRLGSEGDGRILVELPGVSDTDRVKKLLQSTAK 234 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F +V+ + + G+ + + + + + VV+ Sbjct: 235 LEFWQVVEDQQAIMALAGIGTAKYNISRDGRIVSNLGEVLMPRMSNALTVVNLKDTAVVN 294 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308 + + N A + P + Sbjct: 295 RVLQDKEFKTLLPANVRNYKFAWASKPLDTGVGGPKV 331 >gi|302346016|ref|YP_003814369.1| export membrane protein SecD [Prevotella melaninogenica ATCC 25845] gi|302149968|gb|ADK96230.1| export membrane protein SecD [Prevotella melaninogenica ATCC 25845] Length = 1006 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 199/834 (23%), Positives = 367/834 (44%), Gaps = 68/834 (8%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120 + V + + + + + + G+ ++++ + ++ + R E + + Sbjct: 164 EEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSAN 223 Query: 121 GVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + N + L+ ++ + +++ ++ Sbjct: 224 LEFWETYNNQEITPYLVQLDQRLANGETKVDTAATDSTKKVQAKAAATPKFALNKGNAAK 283 Query: 179 STIQRLGSHRILIQ-----------------LPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221 ++ + + + +D + + +++ Sbjct: 284 GEDAQMAALKKMHPLLSMLQTIPGDALSLVGYASVRDTAAINKMIYGQLAKQILPSDLKL 343 Query: 222 SKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 ++ G L + + + G + A +F+ +P V ++ + Sbjct: 344 LWSAKPEDGLNKKNVYGLYALKITTSDGRAPLEGDVVTDAKDDFNQHG-RPQVSMTMNSE 402 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337 GAR + +T+ N+GK +A+VLDG V +AP ++ I G++ ISGNFTIE LA L++ Sbjct: 403 GAREWAALTKANVGKAIAIVLDGVVYSAPRVDGEISGGQSSISGNFTIEDTKDLANTLKS 462 Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFL 396 G +P IV+E VG LG+ SI +G + VL++L+MIV+Y G++A+ ++ Sbjct: 463 GRMPAPAKIVQEEVVGPTLGAQSIEQGLISFAIAFVLLMLYMIVMYNFIPGMMANLALIA 522 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 N+ TL +L+ + LT+P IAGIVL +G AVD+N+L+ ERI+EE + + + +L G+ Sbjct: 523 NLFFTLGVLASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELKLGKGMKQALSEGY 582 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 A+S IFDSN+T+LI V+L G G +RGFA T + I+IS FTA+ + R + + Sbjct: 583 GNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTWIIGIVISFFTAVFLTRLVFENRVS 642 Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576 K + F+ + + + I GL+ IDF Sbjct: 643 KDKWLNQTFTTGFSKNF-MQGKNYHFLSMYKTTFTVWGVAVLVCIVSFAVRGLSRSIDFT 701 Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQ-----------------------------IGDIS 607 GG V N+P + VR ++ Sbjct: 702 GGRNYVVTLNKPTHVEDVRKVMQGAFVNTVGENAGKPATTTVIALGTDGKTVRVSTNYNI 761 Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667 N E + + Y + K +I +I + VGP I++ + Sbjct: 762 DSNNPAEDDKAETILYNALKKGGFVSQASVQNFKNPDIREGGSIIQSAKVGPSIAKSITY 821 Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNL 720 I+ V+++ + +YI +RF+ F++G+I L+LD T +G F+L F +E + Sbjct: 822 NAIMSVLLAIFFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGCFSLCYGWIGFSLEIDQ 881 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSM 777 T + A+LT+IGY +ND VVVYDR+R+N+ + + + + SIN+TL R++ TS+ Sbjct: 882 TFIGAILTVIGYDINDTVVVYDRIRENLGKHKHNLAKADIQKIFNDSINQTLSRTINTSV 941 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + I ++ + + GG I SF+ M GI++ SSIFIA+P+ + + + Sbjct: 942 STLIVLVSIFILGGESIRSFSFAMIIGIIIGTLSSIFIASPVAYLVLGKKIEKR 995 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 93/271 (34%), Gaps = 48/271 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41 M+N ++ + ++ + + + Sbjct: 1 MQNKGLVICVAILLTLASIFYLSFSVATSYYDGQAAKIKDPIAQQDYKDSVKYLGLYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG ++VLE+ D V+ D Sbjct: 61 KCLETQIGLGLDLKGGMNVVLEISVPDVVDFLADHKQDAAYQK----------------- 103 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLN-----VDPKKNLLVTTTEKEISIVLSQNNI 152 L A + D ++LF+ + L + + + + Sbjct: 104 -ALETAKQEEMHSPKDFISLFVDAFHKVAPGHKLAEIFATQQLKGKVSTQSTDEEVEKAL 162 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTA 210 + ++ AI+ S ++ RIDQ G+ + IQ+ R+++++PG ++P R+R+LL +A Sbjct: 163 REEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSA 222 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + F + N ++ + + + Sbjct: 223 NLEFWETYNNQEITPYLVQLDQRLANGETKV 253 >gi|281358636|ref|ZP_06245114.1| protein-export membrane protein SecD [Victivallis vadensis ATCC BAA-548] gi|281314866|gb|EFA98901.1| protein-export membrane protein SecD [Victivallis vadensis ATCC BAA-548] Length = 867 Score = 331 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 214/799 (26%), Positives = 368/799 (46%), Gaps = 59/799 (7%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 + I LGLDL GG +L++ D FL ++ + MR ++ Sbjct: 106 SSSIRLGLDLNGGVEFILQLVPD---QEFLSKLKEDSGKGGEGRADLEKRMRAEFDRY-- 160 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 ++ + + L+G + + + + Sbjct: 161 -------RDIAIEILRKRLEGQKIFEAEIAP-------SGSNYVALRAPVVAKDEKVKLL 206 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 S ++ +L + + ++Q L + Sbjct: 207 NL--------------------IKMSAKLRFRLVHPDNAALVQQYLANPENFTVPLGYEL 246 Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280 F G + Y VE++ ++ G + + + + + F+ GA Sbjct: 247 MKTSEFRAGQAPRVEY----YFVENRAQMDGKGV-SHAQAAKDEFGQRKIQLRFNTEGAE 301 Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340 +F VT +N+G+ LA+VLDG + AP I QAI G A+ISG+F+ E A ++ L +GS Sbjct: 302 QFGRVTSENVGRQLAIVLDGHLYCAPAIRQAILGGNAEISGSFSDEEAKSISDALVSGSF 361 Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 P ++ + + LG+ ++ G A V +VL+ +FMIV Y G+V+ ++ LN++L Sbjct: 362 PFQIKVDAVFDTDPKLGASNVANGIWAGVISMVLVAVFMIVYYRLAGVVSVVALALNIVL 421 Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460 L ++ TLTLP IAGIVL IG+AVD+N+LV ER+REE +S+ S+D+G+SRA+ Sbjct: 422 ILGAMAAFNCTLTLPGIAGIVLTIGMAVDANVLVYERVREELATGKSLRSSIDLGYSRAF 481 Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 S + D+N+T LI +V+L + G GA++GFA+T+ + IL ++FTA+ + R +I RY K+ Sbjct: 482 SAVLDANLTTLITSVILMYVGTGAIKGFAVTLSIGILTTLFTALFVTRLGFDYIFRYTKI 541 Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGI 579 I F R V +S+ + ++ LL G + G+DF GG Sbjct: 542 DHI------HMMQFFKNTNFNFDRMWSKTVMVSLALILLAVVLLCVKGRDVLGVDFTGGT 595 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG-------EKNFLVRLQYQPGDSVAQT 632 + + + L++ + + L+R + + Sbjct: 596 AVSFNYEAQIPQDEMEKVLKAAGYDATVTYKANAAAASENRKVEVLIRGDLTGRSATSSP 655 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + + VG I E + ++ + +S + + +Y+ +R+++ + Sbjct: 656 KDQLAAVLNKAFPDAKLSGGLESSVGGLIGWEFTKAALIAIALSMVGIAVYVSLRYEFVY 715 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 AL ++ L D+ LG + L G +LT VAA+LT+IGYS+NDKVVV+DR+R+N+ L Sbjct: 716 ALSSLIALGHDLLVVLGIYLLLGRTISLTVVAALLTVIGYSMNDKVVVFDRIRENVHLGV 775 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 ++ D ++ SIN+TL R++ TS+ FI V + + GG I F + M GIVV SS Sbjct: 776 CK-NYVDTVNLSINQTLNRTILTSLTTFIVVFVLFLGGGVAINDFVLVMMLGIVVGTYSS 834 Query: 813 IFIAAPILLFIYDWRAKNA 831 IFIAAP++ + + Sbjct: 835 IFIAAPLVSMWHRRAEQRR 853 >gi|307566176|ref|ZP_07628631.1| protein-export membrane protein SecDF [Prevotella amnii CRIS 21A-A] gi|307345141|gb|EFN90523.1| protein-export membrane protein SecDF [Prevotella amnii CRIS 21A-A] Length = 1008 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 204/838 (24%), Positives = 388/838 (46%), Gaps = 71/838 (8%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120 + V + + +R+ + + G+ ++++ + ++ + R E + + Sbjct: 164 EEVKSAIDNSYNVVRNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRRLLQGSAN 223 Query: 121 GVNSKLNVDPK-----KNLLVTTTEKEISIVLSQNNIDQVISHAI--------------- 160 + + + + L ++ ++ S ++ Sbjct: 224 LEFWETYNNQEIAPYLQQLDQRLANASTKADTTKAGSAKIGSASVKKLSLNAAKKAFGKV 283 Query: 161 ------EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 + E+++++ + + S + +RL + Sbjct: 284 VDNGKNDAGAELLKKQHPLLSRLQMVPGEALSLVGYCNVRDTAAVNRLIHSHIAKQVLPA 343 Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKPVVDIS 273 + L ++K V+ + + + + + + G + A FD P V +S Sbjct: 344 NLKLLWSAKPADHIQVKNMYELHALKVTTSDGRAPLEGDVITDAKDQFDQYGK-PEVSMS 402 Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333 + GA + +T+ N+GK +A+VLDG V T+P IN I G++ I+G+FT+ L+ Sbjct: 403 MNSEGAHEWAALTKANVGKAIAIVLDGVVYTSPRINGEIDGGQSSITGSFTVADTKDLSN 462 Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADF 392 L++G +P IV+E VG LG+ SI +G + VL++ ++I +YG G++A+ Sbjct: 463 TLKSGRMPAPAKIVQEEVVGPTLGAQSIQQGLISFAIAFVLLMFYIIAMYGFIPGMLANL 522 Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452 ++ +N+ TL +L+ + LT+P IAGIVL +G AVD+N+L+ ERI+EE R +S+ +L Sbjct: 523 ALLVNLFFTLGILASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELRLGKSMKQAL 582 Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 G+ A+S IFDSN+T+LI ++L G G +RGFA T+ + ++IS FTA+ + R + Sbjct: 583 HEGYKNAFSAIFDSNLTSLITGIILLVTGTGPIRGFATTLIIGLIISFFTAVFLTRLVFE 642 Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG 572 + K + + + + FM+ + I+ +I I + GL+ G Sbjct: 643 NRVNNDKWRHLTFSTGISRNMFRKSTY-SFMKMHKKSFTVWIIAAIICIVSFYVRGLSRG 701 Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIG---------------------------- 604 I+F GG + ++PV + +R + + Sbjct: 702 IEFTGGRNYVITLSKPVQVEDIRKVFNNAFVNTDGVNKGKVANTSVIAIGTDGKTIRVST 761 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 + + + + + + Y + K K +I +I + VGP I++ Sbjct: 762 NWNIDSRANDDDLAETILYNTLKKYNYVTQSSVAKFKNPDIREGGSIIQSSKVGPSIAKN 821 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717 + V V ++ + + +YI +RF+ F++G+I L+LD T +G F+L F +E Sbjct: 822 ITFNAFVSVGLAIVFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGIFSLCHGWIGFSLE 881 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVY 774 + T + A+LT+IGY +ND VVV+DR+R+NM + + + L ++SINETL R++ Sbjct: 882 IDQTFIGAILTVIGYDINDTVVVFDRIRENMAKHKSTLAKYGIQKLFNESINETLSRTIN 941 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 TS++ I ++ + + GG SF+ M GIV+ SSIFIA+PI + + N++ Sbjct: 942 TSVSTLIVLVAIFILGGDSTRSFSFAMIIGIVIGTLSSIFIASPIAYLVMGHKIDNSK 999 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 92/270 (34%), Gaps = 38/270 (14%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41 M+N ++ + ++ + + + Sbjct: 1 MQNKGLVICVAVLLTLASIFYLSFSVATSYYDSQAAKIKDPIARQDYKDSVKYLGIYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG ++VLE+ D V+ +D +++K Q Sbjct: 61 KCLETQIGLGLDLKGGMNVVLEISVPDVVDMLADHKTDA--AYVKSLNEAKAEEASGQGD 118 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 F + K K+ +L + + + Sbjct: 119 FIPLFVKAYQKNAPGHKLAEVF--ATQQLKGKVSTQSTDKE---------VIEALREEVK 167 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++R RIDQ G+ + IQ+ R+++++PG ++P R+R+LL +A + F Sbjct: 168 SAIDNSYNVVRNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRRLLQGSANLEFW 227 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245 + N ++ + + + Sbjct: 228 ETYNNQEIAPYLQQLDQRLANASTKADTTK 257 >gi|261213891|ref|ZP_05928172.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 3 str. Tulya] gi|260915498|gb|EEX82359.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 3 str. Tulya] Length = 785 Score = 330 bits (846), Expect = 5e-88, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L+ + L L + + + + + + A I+RQR++++G Sbjct: 57 RETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763 Score = 98.6 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L+ P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|82699761|ref|YP_414335.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis biovar Abortus 2308] gi|260754641|ref|ZP_05866989.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 6 str. 870] gi|260757864|ref|ZP_05870212.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 4 str. 292] gi|260761687|ref|ZP_05874030.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 2 str. 86/8/59] gi|260883667|ref|ZP_05895281.1| protein-export membrane protein secD [Brucella abortus bv. 9 str. C68] gi|297248241|ref|ZP_06931959.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella abortus bv. 5 str. B3196] gi|82615862|emb|CAJ10866.1| Vacuolar H+-transporting two-sector ATPase, C subunit:Rhodopsin-like GPCR superfamily:Regulator of chromosome condensation, R [Brucella melitensis biovar Abortus 2308] gi|260668182|gb|EEX55122.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 4 str. 292] gi|260672119|gb|EEX58940.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 2 str. 86/8/59] gi|260674749|gb|EEX61570.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 6 str. 870] gi|260873195|gb|EEX80264.1| protein-export membrane protein secD [Brucella abortus bv. 9 str. C68] gi|297175410|gb|EFH34757.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella abortus bv. 5 str. B3196] Length = 785 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L+ + L L + + + + + + A I+RQR++++G Sbjct: 57 RETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+++ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIVILTAVLSLI 351 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763 Score = 98.6 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L+ P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|332881399|ref|ZP_08449049.1| export membrane protein SecD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680775|gb|EGJ53722.1| export membrane protein SecD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1015 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 207/841 (24%), Positives = 376/841 (44%), Gaps = 78/841 (9%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122 V + + LR+ + + G+ +++ +I + + E + + Sbjct: 173 VQSAIDNSYNVLRTRIDRFGVVQPNIQTLEGQMGRIMVEMPGVKEPERVRKLLQGSANLE 232 Query: 123 NSKLNVDPK----------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166 + + + T K + +++ + + Sbjct: 233 FWETYNTEEIIPFLATLDTRLAAEHAAIAENDTAKADTTAMAELTPAEKVDATDSTKKAP 292 Query: 167 IRQRIDQIGISEST-----------------------IQRLGSHRILIQLPGEQDPSRLR 203 ++ + + T G ++ +D + + Sbjct: 293 VKDLAAALKGNSGTPAEKAGAAVDEQAMKNHPLASVLQFAQGPMGCVVGYASWRDTATVN 352 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATA 259 + + + G + D + + G + Sbjct: 353 RYITSAVAKEVLPSDLKLYWGVKPVGSGNMGDIFELYAIKITERNGRAPLEGDVVTE-AK 411 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319 + + +P V ++ + GARR+ +T+ N+ + +A+VLDG V +AP + I G + I Sbjct: 412 DDYEQNGRPCVSMTMNSDGARRWAALTKKNVKRAIAIVLDGYVYSAPTVQNEITGGVSSI 471 Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 +G+FT+E LA +L G +P +IV E+ VG LG +SI +G + V +L++++M Sbjct: 472 TGHFTLEDTRDLANVLNTGKMPAPAHIVSEQFVGPTLGQESINQGITSFVIAFILLMIYM 531 Query: 380 IVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438 +YG G+VA+ ++ LN TL +L+ A LT+ IAG+VL +G+AVD+N+L+ ER Sbjct: 532 CGMYGLIPGMVANGALILNFFFTLGVLTSFQAALTMSGIAGMVLSLGMAVDANVLIYERT 591 Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498 +EE R ++V +L G+S A+S IFDSN+T++I ++L+ FG G +RGFA T+ + IL+ Sbjct: 592 KEELRAGKTVRAALSDGYSNAFSAIFDSNLTSIITGIILYNFGTGPIRGFATTLIIGILV 651 Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558 S FTA+ + R + + +K ++ + D +FM + I + + Sbjct: 652 SFFTAVYLTRIVYEHFLNKEKWMNLTFTTSLSRKFLHD-THYKFMSSYKKSFTIFGVLLV 710 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I LF GL+ GIDF GG V+ + V+ VR+ L++ G + Sbjct: 711 VGIASLFVRGLSKGIDFTGGRNFVVVFEKQVEPETVRTLLQNKFGDANIQVIALGTDHQT 770 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKI---------------------TEIVPLSTIQNTEIV 657 VR+ T V ++ + + +I ++E V Sbjct: 771 VRISTNYRIDEEGTEVDSEIEATLFETLKGGGLLSSDLDLQTFINRDERAGGSIISSEKV 830 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL--- 713 GP ++ ++ IV V+++ IA+ +YI +RF+ F++GA+ L +D +G +++ Sbjct: 831 GPSVAEDITYGAIVSVVLALIAIFLYILLRFRNVAFSVGAVVALTVDTLLIIGAYSICWG 890 Query: 714 ---FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F +E + T + A+LT IGYS+NDKVVV+DR+R+ + LY + L + S+N TL Sbjct: 891 WVPFSLEIDQTFIGAILTAIGYSINDKVVVFDRIREFLHLYPNR-DRQRLFNDSLNTTLT 949 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ TS+ + +L + GG I SFA M G+V+ SSIF+AAP+ R K Sbjct: 950 RTINTSLTTLVVLLCIFFLGGESIRSFAFAMILGVVIGTCSSIFMAAPVAFLTMGQRIKE 1009 Query: 831 A 831 Sbjct: 1010 N 1010 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 84/183 (45%), Gaps = 7/183 (3%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I + + VGP + +E I +GI +I+ I ++IY+ + + A LIL+ TLG Sbjct: 497 HIVSEQFVGPTLGQESINQGITSFVIAFILLMIYMCGMYGLIPGMVANGALILNFFFTLG 556 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F ++ +A ++ +G +V+ V++Y+R ++ ++ + R + + Sbjct: 557 VLTSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKTVRAALSDGYSNAF 613 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +++ + I+ + + +G I FA + GI+V S F A + +Y+ Sbjct: 614 SAIFDSNLTSIITGIILYNFGTGPIRGFATTLIIGILV----SFFTAVYLTRIVYEHFLN 669 Query: 830 NAR 832 + Sbjct: 670 KEK 672 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 92/251 (36%), Gaps = 45/251 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSA 38 M+N ++ + ++ + + +F+ + P Sbjct: 1 MQNKGFVKVFALLLTLVCVFYLSFSFVTTYQMNKVDEITKTQGEEAGAHYLDSVMNNPVW 60 Query: 39 M--------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90 + + ISLGLDL+GG +++LEV + V D + + Sbjct: 61 LGAYSLKDCREMEISLGLDLKGGMNVILEVSVPEVVKALADHKEDPAFNK-AVAKAAEGA 119 Query: 91 MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 + ITL + + K + +++ E+ VL Sbjct: 120 KNSQSDFITLFVKE-------YKALAPDGNLAELFATQQLKGKVTTKSSDSEVEKVLRAE 172 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208 + AI+ S ++R RID+ G+ + IQ RI++++PG ++P R+R+LL Sbjct: 173 -----VQSAIDNSYNVLRTRIDRFGVVQPNIQTLEGQMGRIMVEMPGVKEPERVRKLLQG 227 Query: 209 TAKMSFHKVLP 219 +A + F + Sbjct: 228 SANLEFWETYN 238 >gi|300725856|ref|ZP_07059320.1| putative protein-export membrane protein SecD [Prevotella bryantii B14] gi|299776844|gb|EFI73390.1| putative protein-export membrane protein SecD [Prevotella bryantii B14] Length = 1014 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 215/844 (25%), Positives = 392/844 (46%), Gaps = 78/844 (9%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112 V+ ++ + +Q D +R+ + K G+ ++++ Q +I + R E + Sbjct: 156 VEVENAIRSEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQQGRIMVEMPGIREPERMR 215 Query: 113 DKVT--------------------LFLQGVNSKLNVDPKKNLLVTTTEKEISIV------ 146 + + + + + + Sbjct: 216 KLLQGSANLEFWETYNAEEIIPYLNQVDQRFANGGETATDTTAKDSAKSTAPVTKKAEPK 275 Query: 147 --LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204 L+ V + +E +++ + + ++T Q + + +++ Sbjct: 276 FKLAGAAKKDVAPKSETAQIEAAKKQHPLLAVLQTTGQNSLALVGYANVRDTAAINKIIN 335 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDP 263 + L ++K + V+ + + + + + G + A FD Sbjct: 336 SQIAKQILPSDVRLLWSAKPANLQNVKNIYELYALKVTTSTGRAPLEGDVITDAKDEFDQ 395 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 + PVV + + GAR++ ++T+ N GK +A+VLDG V +AP +NQ I G +QISGNF Sbjct: 396 FS-NPVVSMQMNTEGARKWAQLTKANQGKAVAIVLDGVVYSAPRVNQEIDGGNSQISGNF 454 Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383 TIE L+ L++G +P +IV+E VG LG+ SI +G + VL++++M+++Y Sbjct: 455 TIEETKDLSNTLKSGRMPAPAHIVQEDVVGPTLGAQSIQQGLISFAVAFVLLMVYMVLMY 514 Query: 384 -GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 G+VA+ ++ N+ TL +L+ + LT+P IAG+VL +G AVD+N+L+ ERI+EE Sbjct: 515 DFIPGMVANGALIANLFFTLGVLASFQSALTMPGIAGMVLTLGTAVDANVLIYERIKEEM 574 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 R + + +L+ G+ A+S IFDSN+T+LI ++L G G +RGFA T + I++S FT Sbjct: 575 RMGKGLREALEAGYKNAFSAIFDSNLTSLITGIILLTTGTGPIRGFATTWIIGIVVSFFT 634 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 A+ + R + ++ K ++ + + FM + + + Sbjct: 635 AVFLTRLVYENRVKSGKWLNLKF-YTGFSKSMMQGSSYNFMGMYKKSFTVWGVAIFICVI 693 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG-----------------D 605 GL+ IDF GG V ++ V++ VR L + Sbjct: 694 SFAVRGLSQSIDFTGGRNYVVALDKTVEVEDVREVLGDAFVNTVGPDAGKTATTSVIALG 753 Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK------------KITEIVPLSTIQN 653 + N+ + D A+T + +KK K +I +I + Sbjct: 754 TDGKTIRVSTNYNIDSTDPLEDDKAETILFNALKKGNFVSQANVESFKNPDIREGGSIIS 813 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712 + VGP +++++ IV V+++ I + +YI +RF+ F+ GA LILD T +GFF+ Sbjct: 814 SAKVGPSVAKDITYGAIVSVVLAIIFIFLYILLRFRNIGFSAGATAGLILDTTIVIGFFS 873 Query: 713 L------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI---SFRDLIDK 763 L F +E + T + A+LT+IGY +ND VVV+DR+R+N+ + + L + Sbjct: 874 LCYGWIGFSLEIDQTFIGAILTVIGYDINDSVVVFDRIRENLNNNKNRMSRVDIQALFNN 933 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 SINETL R++ TS++ I ++ + + GG I SFA M G+++ SSIFIA+P+ + Sbjct: 934 SINETLSRTINTSISTLIVLVSIFILGGDSIRSFAFAMIIGVIIGTLSSIFIASPVAYLV 993 Query: 824 YDWR 827 + Sbjct: 994 LGKK 997 Score = 124 bits (309), Expect = 9e-26, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 89/183 (48%), Gaps = 7/183 (3%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I ++VGP + + I++G++ ++ + +++Y+ + + + + A LI ++ TLG Sbjct: 476 HIVQEDVVGPTLGAQSIQQGLISFAVAFVLLMVYMVLMYDFIPGMVANGALIANLFFTLG 535 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 A F + +A ++ +G +V+ V++Y+R+++ M++ R+ ++ Sbjct: 536 VLASFQSALTMPGIAGMVLTLGTAVDANVLIYERIKEEMRM---GKGLREALEAGYKNAF 592 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +++ + I+ + + G I FA GIVV S F A + +Y+ R K Sbjct: 593 SAIFDSNLTSLITGIILLTTGTGPIRGFATTWIIGIVV----SFFTAVFLTRLVYENRVK 648 Query: 830 NAR 832 + + Sbjct: 649 SGK 651 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 92/273 (33%), Gaps = 38/273 (13%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41 M+N +++ ++ + + Sbjct: 1 MQNKGIVIVTAVLLTLASIFYLSFSVATSYFDSEAAKIKDPIAQQDYKDSVKYLGVYSYK 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG +++LE+ D + +D + K Q Sbjct: 61 NCLETQIGLGLDLKGGMNVILEISVPDVIETLADHKTDAAFT--KAMKDAKAEHMNSQGD 118 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 F D+ + K+ + V P+ + + I + Sbjct: 119 FIKLFIDAYHRVAPGHKLAEVFATQQMQGKVSPQSSDVEVEN-----------AIRSEVQ 167 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++R RID+ G+ + IQ+ RI++++PG ++P R+R+LL +A + F Sbjct: 168 AAIDNSFNVVRTRIDKFGVVQPNIQKLEGQQGRIMVEMPGIREPERMRKLLQGSANLEFW 227 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248 + ++ V + G + Sbjct: 228 ETYNAEEIIPYLNQVDQRFANGGETATDTTAKD 260 >gi|261324998|ref|ZP_05964195.1| protein-export membrane protein secD [Brucella neotomae 5K33] gi|261300978|gb|EEY04475.1| protein-export membrane protein secD [Brucella neotomae 5K33] Length = 785 Score = 330 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 240/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 57 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA++ L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 352 GASIRLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I +LIY+W RF+W ALGA+ + + D+ Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGILIYVWFRFRWQLALGAVLSTLHDVVIL 645 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 646 SGLFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763 Score = 98.6 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|320334657|ref|YP_004171368.1| protein-export membrane protein SecD [Deinococcus maricopensis DSM 21211] gi|319755946|gb|ADV67703.1| protein-export membrane protein SecD [Deinococcus maricopensis DSM 21211] Length = 762 Score = 330 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 208/683 (30%), Positives = 364/683 (53%), Gaps = 18/683 (2%) Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGTTAK 211 +++ II RI+ +G++E T+ G R+++++PG + R R ++ AK Sbjct: 86 TTDRDTLDRIKTIIENRINALGVAEPTVTVQGGKRVVVEIPGATEAVQERTRSIINQQAK 145 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F V G + E +G + A A DP++ + VV+ Sbjct: 146 LEFRIVNQGAQPDAQEASKNPASG--GYKLSDLGPAEATGEVIASAAAGADPQSGRWVVN 203 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + GA +F E TR N+ + +A+VLD ++ + INQA QISG+FT E A L Sbjct: 204 FTTTPKGADQFGEFTRKNVNRLMAIVLDDQIKSVATINQA-LYSNIQISGSFTTEEASQL 262 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVA 390 A +L++GSLP+K+ + E+ +G LG+D+I G A + G+ L+ + + YG +GLV Sbjct: 263 ALVLKSGSLPVKIKVEAEQAIGPTLGADAIRSGAIAALVGIGLVFVMLFFYYGLWFGLVG 322 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + + ++ L +L GATLTLP IAG+VL IG AVD N++ ERI+EE ++ + + Sbjct: 323 ALGLLFSSVIILGILGGFGATLTLPGIAGLVLTIGAAVDGNVISFERIKEELQRGKGIKN 382 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 S++ G+ + TI D N++ L++ + L+ + G V+GFA+T+ + ++ S+F+ + + M Sbjct: 383 SINAGYDHSLWTIVDVNLSHLLSALALYNYATGPVKGFALTLAIGVVASVFSNLVFAKWM 442 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570 M + ++ I F++A +S+L +I I L GLN Sbjct: 443 MRALASRREF---------GAPRRVGVPNIDFIKASPIITTLSVLLAIGGIAALAVKGLN 493 Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630 YG+DF G + V A + VR L + + +++ + Sbjct: 494 YGVDFTSGTNITVKAAPSTQVEDVRRALGDANLNVAHAEGATIQRSVTPGTNAAVFNVKV 553 Query: 631 QTRVLEMVKKKITEIV--PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 V++ + P +++Q+ E VGP + EL K I V++ +L+Y+ RF Sbjct: 554 PELNTAQVEQLRAQFTKLPQASVQSVETVGPAVGGELRDKTIRAVLLGLALILVYVGFRF 613 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + LG+I ++ D+ +G +AL G+EFN+ VAAVLTLIGYS+ND ++V DR+R+N+ Sbjct: 614 DFIMGLGSILAVLHDVAIVMGLYALLGLEFNIATVAAVLTLIGYSLNDSIIVSDRIRENL 673 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 KL S+RD+++ SIN+TL R+V TS++ + ++ + ++GG+V+ F++ + GI++ Sbjct: 674 KLM-RGRSYRDIVNASINQTLSRTVMTSVSTMLPLVSLLIFGGAVLRDFSLALLVGILIG 732 Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831 SSI+I AP+++ + +W Sbjct: 733 TYSSIYIVAPMVVVLENWLKNRR 755 Score = 68.2 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 20/206 (9%), Positives = 54/206 (26%), Gaps = 5/206 (2%) Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSF 102 I+LGLDL+GG + L + L + + + G+ ++ ++ + Sbjct: 66 INLGLDLKGGLRIELAPENGTTDRDTLDRIKTIIENRINALGVAEPTVTVQGGKRVVVEI 125 Query: 103 ADSRFK--ENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + E + + +N + + + + + Sbjct: 126 PGATEAVQERTRSIINQQAKLEFRIVNQGAQPDAQEASKNPAS--GGYKLSDLGPAEATG 183 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 E Q G ++ +RL ++ S + Sbjct: 184 EVIASAAAGADPQSGRWVVNFTTTPKGADQFGEFTRKNVNRLMAIVLDDQIKSVATINQA 243 Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDK 246 + G ++ +++ Sbjct: 244 LYSNIQISGSFTTEEASQLALVLKSG 269 >gi|23501777|ref|NP_697904.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella suis 1330] gi|256369319|ref|YP_003106827.1| protein-export membrane protein, SecD/SecF family [Brucella microti CCM 4915] gi|261218752|ref|ZP_05933033.1| export membrane protein secD [Brucella ceti M13/05/1] gi|261317542|ref|ZP_05956739.1| export membrane protein secD [Brucella pinnipedialis B2/94] gi|261321749|ref|ZP_05960946.1| export membrane protein secD [Brucella ceti M644/93/1] gi|265988576|ref|ZP_06101133.1| protein-export membrane protein secD [Brucella pinnipedialis M292/94/1] gi|23347707|gb|AAN29819.1| protein-export membrane protein, SecD/SecF family [Brucella suis 1330] gi|255999479|gb|ACU47878.1| protein-export membrane protein, SecD/SecF family [Brucella microti CCM 4915] gi|260923841|gb|EEX90409.1| export membrane protein secD [Brucella ceti M13/05/1] gi|261294439|gb|EEX97935.1| export membrane protein secD [Brucella ceti M644/93/1] gi|261296765|gb|EEY00262.1| export membrane protein secD [Brucella pinnipedialis B2/94] gi|264660773|gb|EEZ31034.1| protein-export membrane protein secD [Brucella pinnipedialis M292/94/1] Length = 785 Score = 330 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 57 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763 Score = 98.2 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|261752209|ref|ZP_05995918.1| protein-export membrane protein secD [Brucella suis bv. 5 str. 513] gi|261741962|gb|EEY29888.1| protein-export membrane protein secD [Brucella suis bv. 5 str. 513] Length = 785 Score = 330 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 57 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTILGNLSFRAMDDTMSPDDAIRGTPPADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763 Score = 97.1 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTILGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|311031518|ref|ZP_07709608.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus sp. m3-13] Length = 749 Score = 330 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 192/696 (27%), Positives = 328/696 (47%), Gaps = 28/696 (4%) Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 +V + ++ + +R++ +G+SE IQ G RI +QL G +D S+ R+LL T AK+ Sbjct: 55 SEVDRDLLVSTVSALNKRVNVLGVSEPNIQIEGDDRIRVQLAGVEDQSKARELLSTEAKL 114 Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272 SF V G S + + + Sbjct: 115 SFRDVDDKLLMDGSALAEGGASQSFDQNNAPSVALTLRSASEFADITRQVRDMGVGRNLM 174 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 + + D + L+A + Q + QI+GNF+IE+A LA Sbjct: 175 VIWLDFEEGVDSYEAEAGKE------DPKYLSAAQVTQVLNETNVQITGNFSIESAKELA 228 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392 +L+AGSLP++L + +VGA G ++ K A + G+ I++FM+V Y GLVA Sbjct: 229 ELLKAGSLPVELEEIYSTSVGAKFGETALQKTVLAGIIGISAILIFMLVYYRLPGLVAVI 288 Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452 ++ + L L + L+ LTLP IA ++LG+G+AVD+NI+ ERI+EE + +S + Sbjct: 289 TLSTYIFLILLVFELMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKLGRSAMSAF 348 Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 G ++STI D+N+T L+A V+F +G +V+GFA + +SIL+S TA+ R ++ Sbjct: 349 RAGSRNSFSTILDANLTTLLAAGVMFVYGTSSVKGFATMLIVSILLSFITAVFGSRLLLG 408 Query: 513 FIIRYKKMKSIDI-------------NPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559 + + M + FM+ R +S + Sbjct: 409 LWVNSRFMNNKPHLFGVKKEDILDINMTDENTEPPNRFDNWDFMKHRKKFFMLSGALIVV 468 Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 I +L LN GIDF G ++ +L+ + + L S+ + + V Sbjct: 469 GIIVLAVFRLNLGIDFASGTRVEILSETSLTAEEITEELASIGLEPKDVVLAGNDNEIAV 528 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 V E V+ K + V P + +EL R ++I+A+ Sbjct: 529 ARYVDDFSQTEIAEVKEYVQNKYGSE------PSVSTVSPTVGQELARNAFFAILIAAVG 582 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 ++IY+ IRF+W FAL AI L D + FF+L +E ++T +AA+LT++GYS+ND +V Sbjct: 583 IIIYVTIRFEWMFALAAIVALFHDAFFIVAFFSLTRLEVDITFIAALLTIVGYSINDTIV 642 Query: 740 VYDRMRKNMKLYTTSISF---RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 +DR+R+N+K ++ ++++KS+ +T RS+ T I+VL + ++G I + Sbjct: 643 TFDRIRENLKKKKRVKTYEDLEEIVNKSLQQTFVRSLNTVGTVVIAVLALLIFGSESITN 702 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 F+I + G++V SS+FIAA + + + + Sbjct: 703 FSIALLVGLIVGTYSSLFIAAQLWMKWKYKQISRPK 738 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 77/735 (10%), Positives = 185/735 (25%), Gaps = 44/735 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +I + N + + I LGLDL+GG ++ EV Sbjct: 3 KRGRIVAFFLLLILIGSTIGVFTNPITKD-------------IKLGLDLQGGFEVLYEVK 49 Query: 62 E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116 + L L + G+ +++ + ++I + A + + ++ Sbjct: 50 PINENSEVDRDLLVSTVSALNKRVNVLGVSEPNIQIEGDDRIRVQLAGVEDQSKARELLS 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + ++ + QNN V S R + Sbjct: 110 TEAKLSFRDVDDKLLMDGSALAEGGASQ-SFDQNNAPSVALTLRSASEFADITRQVRDMG 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + E + + + A+++ N + F + ++ Sbjct: 169 VGRNLMVIWLDFEEGVDSYEAEAGKEDPKYLSAAQVTQVL-NETNVQITGNFSIESAKEL 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT-------RDN 289 VE+ I+ A F + V + A F + Sbjct: 228 AELLKAGSLPVELEEIYSTSVGAKFGETALQKTVLAGIIGISAILIFMLVYYRLPGLVAV 287 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 I + L V +P A I G A I+ L + + + Sbjct: 288 ITLSTYIFLILLVFELMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKLGRSAMSA 347 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTL 402 G+ +I + ++ ++ + + SI L+ I L L Sbjct: 348 FRAGSRNSFSTILDANLTTLLAAGVMFVYGTSSVKGFATMLIVSILLSFITAVFGSRLLL 407 Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462 L P + G+ L ++ E + + S A Sbjct: 408 GLWVNSRFMNNKPHLFGVKKEDILDINMTDENTEPPNRFDNWDFMKHRKKFFMLSGALIV 467 Query: 463 IFDSNITAL-IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521 + + + + F G ++ + +I + ++ ++ Sbjct: 468 VGIIVLAVFRLNLGIDFASGTRVEILSETSLTAEEITEELASIGLEPKDVVLAGNDNEIA 527 Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 I + + ++ ++ I + Sbjct: 528 VARYVDDFSQTEIAEVKEYVQNKYGSEPSVSTVSPTVGQELARNAFFAILIAAVGIIIYV 587 Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + L+ + + F E + + + + Sbjct: 588 TIRFEWMFALAAIVALFHDAFFIVAFFSLTRLEVDITFIAALLTIVGYSINDTIVTFDRI 647 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIWI------RFKWYF 692 + ++ E + +++ L + + V IA+L + F Sbjct: 648 RENLKKKKRVKTYEDLEEIVNKSLQQTFVRSLNTVGTVVIAVLALLIFGSESITNFSIAL 707 Query: 693 ALGAITTLILDITKT 707 +G I + Sbjct: 708 LVGLIVGTYSSLFIA 722 >gi|148560432|ref|YP_001258870.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella ovis ATCC 25840] gi|148371689|gb|ABQ61668.1| protein-export membrane protein, SecD/SecF family [Brucella ovis ATCC 25840] Length = 785 Score = 330 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + +E + I+RQR++++G Sbjct: 57 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTD-----LETTTNIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763 Score = 98.2 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLETTTNIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|332828462|gb|EGK01167.1| hypothetical protein HMPREF9455_00207 [Dysgonomonas gadei ATCC BAA-286] Length = 989 Score = 330 bits (844), Expect = 9e-88, Method: Composition-based stats. Identities = 188/793 (23%), Positives = 364/793 (45%), Gaps = 31/793 (3%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGV 122 + + LR+ + + G+ +++++ N+ I + + + + + Sbjct: 193 LQSVADNSFNVLRTRIDRFGVVAPNIQKLDNRAERIMIELPGIKEPDRVRKLLQGSANLE 252 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 K + ++ + L+ N+ A+ S+++ Sbjct: 253 FWKTYNLNEIQGYISALTERSREALAAQNVTDTT--AVSDSLKVQEVGNLGFTKPFIENF 310 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 G ++ + + D + + +L + K + Sbjct: 311 ISGGMGAIVGIVHKNDTAAVNAILRRFQDAYPPDLRFAWGFKAEDIRETQITLYALRGDG 370 Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302 ++ + G + A A+ V + + +G +R+ +T G+ +A+VLDG V Sbjct: 371 LKKGPALDGDVVISAKADQSQHGATWEVSMQMNSVGTQRWATITGAEKGRSIAIVLDGSV 430 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 +AP +N I G++QI+GNFT E A L +L++G + ++IV+E VG LG ++I Sbjct: 431 YSAPNVNDKIEGGQSQITGNFTPEDAKDLENVLKSGKMKAGVHIVQEDIVGPSLGQEAIK 490 Query: 363 KGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 G + V LVL++ ++ ++YG GL+A+ ++ +N+ T+ +L+ GA +TLP I G+V Sbjct: 491 AGVISFVLALVLLMAYICLVYGFIPGLIANSAVLVNLFFTIGILAAFGAVMTLPGITGLV 550 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + LAVD+N+LV ER +EE R ++ ++ G+ A+S IFD + + +I ++L +FG Sbjct: 551 LSLALAVDANVLVYERTKEELRAGKNTKVAVVDGYKHAFSAIFDGHASQVITAIILAYFG 610 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541 G ++GFA T+ + I+ S T + + R +++ ++ L I Sbjct: 611 TGPIQGFATTLIIGIVASFITNVFLTRIFYEYMLDKGHFRNQTFTTAISRKL-FVDTKIN 669 Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601 F+ V +S + + + LF +GLN GIDF GG V ++ V+ + L Sbjct: 670 FLGMTKKIVILSAVLLVAGVGSLFINGLNGGIDFTGGRNYLVRFDKNVNADAIEKVLVPE 729 Query: 602 QIGDISFQNFDGEK---------NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP----- 647 G G + + + + + +T Sbjct: 730 FEGSTVLVLTSGSASQSSTTSQVRITTNYKIEEATDEVEDEIRAKMTHALTAAGFLTDGK 789 Query: 648 --LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704 +Q+++ VGP ++ +L + V+I+ + M +YI +RF+ F+LG + + D Sbjct: 790 TIDDFVQSSQRVGPSVADDLKTAATIAVLIAVVCMALYILLRFRDIAFSLGTLIAVAHDA 849 Query: 705 TKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 + ++L F +E + + +AAVLT++GYS+NDKVV++DR+R+ +Y + Sbjct: 850 VMVIFLYSLLYKIMPFSMEIDQSFIAAVLTVVGYSINDKVVIFDRIREIRNMYPKR-NIT 908 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 + I++++N TLGR++ TS++ + V + + GG I SF + GIV+ SS+F+A P Sbjct: 909 ETINEALNSTLGRTLNTSISTMLVVFCIFLLGGDTIRSFTFAIFIGIVIGTYSSVFVATP 968 Query: 819 ILLFIYDWRAKNA 831 I I+ K Sbjct: 969 IAWGIFKKEGKKK 981 Score = 54.3 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 16/213 (7%) Query: 40 PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT 99 + I LGLDL+GG +++EVD + L +E + ++ N+ Sbjct: 91 REKEIGLGLDLKGGMSVIVEVDAAAVLRS-LGDPENEAFNT--ALTEASAENKKGSNRDY 147 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 ++ +FK + L GV S + + + ++ + + + Sbjct: 148 ITLFVDKFKAANGND---KLAGVFS---TKLRDQVGPQDKDDKVI-----SALRTELQSV 196 Query: 160 IEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 + S ++R RID+ G+ IQ+ + RI+I+LPG ++P R+R+LL +A + F K Sbjct: 197 ADNSFNVLRTRIDRFGVVAPNIQKLDNRAERIMIELPGIKEPDRVRKLLQGSANLEFWKT 256 Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 N +G++ + V D +S Sbjct: 257 YNLNEIQGYISALTERSREALAAQNVTDTTAVS 289 >gi|89100788|ref|ZP_01173641.1| preprotein translocase subunits D and F [Bacillus sp. NRRL B-14911] gi|89084491|gb|EAR63639.1| preprotein translocase subunits D and F [Bacillus sp. NRRL B-14911] Length = 753 Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats. Identities = 190/696 (27%), Positives = 338/696 (48%), Gaps = 29/696 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + + + E + +R++ +G++E IQ G +R+ +QL G +D ++ R++L T A Sbjct: 53 GKKATKEVLNSTAEALDRRVNALGVNEPIIQIEGDNRVRVQLAGVKDQNQAREMLSTEAN 112 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 +SF V G + + K +S L +A + + +V+ Sbjct: 113 LSFRDVNDREMMN----GSDLVEGGAKQTFDENGKPSVS---LTLKSAEKFKEVTQEIVN 165 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + + K + D + L+AP ++Q I GNF++E A L Sbjct: 166 MGAPNNLLVIWLDYEEGDSFKEESQKEDPKYLSAPQVSQVFNQDTVSIVGNFSLEEAKTL 225 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L+AG+LP++L +VGA G D++ K + G+++I LFMI Y G +A Sbjct: 226 SSLLKAGALPVELTEEYSTSVGAKFGEDAMQKTITGGIIGILVIFLFMIAFYRFPGFIAT 285 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + + L L + + LTLP IA ++LG+G+AVD+NI+ ERI+EE + +SV + Sbjct: 286 ITLSIYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKVGKSVKSA 345 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G + STI D+NIT ++A VVLF +G +V+GFA + LSIL S TA+ R ++ Sbjct: 346 FQAGNKNSLSTILDANITTILAAVVLFLYGTSSVKGFATMLILSILASFITAVYGSRLLL 405 Query: 512 IFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGISILFSI 558 + + L F++ R SI ++ Sbjct: 406 GLWVNSRIFTKKPTWFGVKKSEIKDIAENYDTLDLPTKYDRFDFVKHRRKFFIFSIAMAV 465 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I L LN GIDF G ++ + A + V+ S ++ L + + ++N Sbjct: 466 AGIIALSVFRLNLGIDFVAGTRVEITAGQSVNKSEIQEELSKVGLETDDIIISGDDQNIG 525 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V P + + + N V P + +EL + ++I+++ Sbjct: 526 VARFTDPLGKDKIAELKTHMNDVYGQE------PNVSTVSPTVGKELAKNAFKALLIASV 579 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF+ Y AL A+ L+ D + F++ E ++T +AA+LT++GYS+ND + Sbjct: 580 GIIIYVTIRFEIYMALAAVIALLHDAFFIIALFSIIRFEVDITFIAAILTIVGYSINDTI 639 Query: 739 VVYDRMRKNMKLYTTSISFRDL---IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DRMR+NM+ +F D+ +++S+ +TLGRSV T + I+V+ + ++G I Sbjct: 640 VTFDRMRENMQKKKRLKTFDDIADVVNQSLRQTLGRSVSTVITVVIAVVGLLIFGSESIR 699 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 SF+ + G+V SS+FIA+ + L + K Sbjct: 700 SFSFALLIGLVAGTYSSLFIASQLWLVWKNKELKKK 735 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 100/280 (35%), Gaps = 9/280 (3%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 S+ T + + + + + + Sbjct: 147 SLTLKSAEKFKEVTQEIVNMGAPNNLLVIWLDYEEGDSFKEESQKEDPKYLSAPQVSQVF 206 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + + ++ + +L+ + + VG K + ++K I G Sbjct: 207 NQDTVSIVGNFSLEEAKTLSSLLKAGALPVELTEEY-----STSVGAKFGEDAMQKTITG 261 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 II + + +++ +++ A TL + I L F L +AA++ +G Sbjct: 262 GIIGILVIFLFMIAFYRFP-GFIATITLSIYIYLILLVFDWMNGVLTLPGIAALILGVGM 320 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 +V+ ++ Y+R+++ +K+ S + +L + ++ ++ + + ++G S Sbjct: 321 AVDANIITYERIKEELKV---GKSVKSAFQAGNKNSLSTILDANITTILAAVVLFLYGTS 377 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + FA + I+ + ++++ + +L + R + Sbjct: 378 SVKGFATMLILSILASFITAVYGSRLLLGLWVNSRIFTKK 417 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 17/131 (12%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60 + + + +I L+ + + N I LGLDL+GG ++ +V Sbjct: 3 KRSRIVAFFLIVILIGSLM-----------GGTTKNIL--NNIKLGLDLQGGFEVLYDVK 49 Query: 61 --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTL 117 D L ++ L + G+ ++ + N++ + A + + + ++ Sbjct: 50 TKDGKKATKEVLNSTAEALDRRVNALGVNEPIIQIEGDNRVRVQLAGVKDQNQAREMLST 109 Query: 118 FLQGVNSKLNV 128 +N Sbjct: 110 EANLSFRDVND 120 >gi|254693625|ref|ZP_05155453.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella abortus bv. 3 str. Tulya] Length = 775 Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L+ + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753 Score = 98.6 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L+ P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|189024077|ref|YP_001934845.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus S19] gi|237815323|ref|ZP_04594321.1| protein-export membrane protein SecD [Brucella abortus str. 2308 A] gi|254689141|ref|ZP_05152395.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella abortus bv. 6 str. 870] gi|254697275|ref|ZP_05159103.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella abortus bv. 2 str. 86/8/59] gi|254730174|ref|ZP_05188752.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella abortus bv. 4 str. 292] gi|256257391|ref|ZP_05462927.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella abortus bv. 9 str. C68] gi|189019649|gb|ACD72371.1| Vacuolar H+-transporting two-sector ATPase, C subunit [Brucella abortus S19] gi|237790160|gb|EEP64370.1| protein-export membrane protein SecD [Brucella abortus str. 2308 A] Length = 775 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L+ + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+++ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIVILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753 Score = 98.6 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L+ P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|281424727|ref|ZP_06255640.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella oris F0302] gi|281401097|gb|EFB31928.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella oris F0302] Length = 996 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 213/830 (25%), Positives = 385/830 (46%), Gaps = 60/830 (7%) Query: 61 DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIAD 113 + + + +Q D +R+ + K G+ ++++ +I + + E + Sbjct: 157 EVEKVLREEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRK 216 Query: 114 KVTLFLQGVNSKL------------------NVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + + N +K+ + + + Sbjct: 217 LLQGSANLEFWETYNAEEVIPYLQQLDSRLANDASNDTTTAQQAQKKAVVKGVKFQVKNA 276 Query: 156 ISHAIEQ----SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + Q ME +++ + + + T Q + + +L Sbjct: 277 DKETVAQKSNAQMEAAKKQHPLLAMLQPTGQNSLALVGYASVRDTAAIDKLIYGQTAKQV 336 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKPVV 270 + L ++ + + + + + G + A F+ T +P V Sbjct: 337 LPSDIKLLWSATPEDGIKAKNIFGLYAIKVTSNNGQAPLQGDVVVDAKDEFNHVTGQPEV 396 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 +++ + GARR+ +T+ N+GK +A+VLD V +AP +N I G + ISGNFT+E Sbjct: 397 NMTMNTEGARRWAALTKANVGKAIAIVLDDAVYSAPRVNGEIDGGSSAISGNFTVEMTKD 456 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389 LA L++G +P IV+E VG LG+ SI +G + VL++++M+++Y G++ Sbjct: 457 LANTLKSGRMPAPARIVQEEVVGPTLGAASIQQGIVSFAIAFVLLIIYMVMMYNFIPGMI 516 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +NV TL +L+ A LT+ IAG+VL +G AVD+N+L+ ERI+EE R + + Sbjct: 517 ANTALVINVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRAGKGMK 576 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 ++ G+S A+S IFDSN+T+LI V+L+ FG G ++GFA T + I+ S F+A+ + R Sbjct: 577 QAVAAGYSNAFSAIFDSNLTSLITGVILYVFGTGPIQGFATTWIIGIVCSFFSAVFLTRL 636 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + ++ + +++ L +FM ++++ +I I F GL Sbjct: 637 VYEHQLKKDRWQNLKYWTGISKNL-MQGKNFKFMSMYKGTFTVAVIAAIVFIGSFFVRGL 695 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 IDF GG V + + VR L + G + G N +R+ Sbjct: 696 AQSIDFTGGRNYVVQFEKSTEPEEVREVLTHIFPGCTTGALSLGTDNKTIRISTNYKIES 755 Query: 630 AQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKG 669 + + + K+ ++ +I ++ VGP +++++ Sbjct: 756 NSPTIDDEAETKLYQGLKKAGLISQKSVEAFKNPDVRAGGSIISSSKVGPSVAKDVTYGA 815 Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG------IEFNLTA 722 I+ VII+ +A+ +YI IRF+ F+ G+ L+LD +G F+L +E + T Sbjct: 816 IISVIIALVAIFLYILIRFRNVAFSAGSTIALVLDALTVIGLFSLLQGLLPFSLEVDQTF 875 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 + AVLT+IGYS+NDKVVV+DR+R+N+KL+ + L + SIN+TL R++ TS + I Sbjct: 876 IGAVLTVIGYSINDKVVVFDRIRENLKLHPK-QDIQVLFNDSINQTLARTINTSFSTLIV 934 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +L + + GG I FA M G++ SSIFIA+PI + K+ R Sbjct: 935 LLVILLLGGKSIQPFAFAMTIGVIFGTLSSIFIASPIAYLLMGKSIKDRR 984 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 99/272 (36%), Gaps = 40/272 (14%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPK---------------- 41 M+N ++ ++ + + S + + + Sbjct: 1 MQNKGIVICTAVLLTLASIFYLSFSVATSYYDSQAAKLKDPIAQQDYKDSVKYLGIYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR-SFLKKEGIGVFSMRQIQN 96 +I LGLDL+GG +++LE+ D + +D +K+ + + + Sbjct: 61 KCLETQIGLGLDLKGGMNVILEISVPDVLETLADHKTDPAFTKSMKQARAEEETSQS--D 118 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 I+L R +L L + S + + + + Sbjct: 119 FISLFLKYYRQ------------NAPGHRLAEIFATQQLQGKINPQSSDSEVEKVLREEV 166 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 AI+ S ++R RID+ G+ + IQ+ + RI++++PG ++P R+R+LL +A + F Sbjct: 167 QAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRKLLQGSANLEF 226 Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 + ++ + +D + + Sbjct: 227 WETYNAEEVIPYLQQLDSRLANDASNDTTTAQ 258 >gi|299142058|ref|ZP_07035192.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella oris C735] gi|298576520|gb|EFI48392.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Prevotella oris C735] Length = 996 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 214/830 (25%), Positives = 385/830 (46%), Gaps = 60/830 (7%) Query: 61 DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIAD 113 + + + +Q D +R+ + K G+ ++++ +I + + E + Sbjct: 157 EVEKVLREEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRK 216 Query: 114 KVTLFLQGVNSKL------------------NVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + + N +K+ + + + Sbjct: 217 LLQGSANLEFWETYNAEEVIPYLQQLDSRLANDASNDTTTAQQAQKKAVVKGVKFQVKNA 276 Query: 156 ISHAIEQ----SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + Q ME +++ + + + T Q + + +L Sbjct: 277 DKETVAQKSNAQMEAAKKQHPLLAMLQPTGQNSLALVGYASVRDTAAIDKLIYGQTAKQV 336 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKPVV 270 + L ++ + + + + + G + A F+ T +P V Sbjct: 337 LPSDIKLLWSATPEDGIKAKNIFGLYAIKVTSNNGQAPLQGDVVVDAKDEFNHVTGQPEV 396 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 +++ + GARR+ +T+ N+GK +A+VLD V +AP +N I G + ISGNFT+E Sbjct: 397 NMTMNTEGARRWAALTKANVGKAIAIVLDDAVYSAPRVNGEIDGGSSVISGNFTVEMTKD 456 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389 LA L++G +P IV+E VG LG+ SI +G + VL++++M+++Y G++ Sbjct: 457 LANTLKSGRMPAPARIVQEEVVGPTLGAASIQQGIVSFAIAFVLLIIYMVMMYNFIPGMI 516 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +NV TL +L+ A LT+ IAG+VL +G AVD+N+L+ ERI+EE R + + Sbjct: 517 ANTALVINVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRAGKGMK 576 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 ++ G+S A+S IFDSN+T+LI V+L+ FG G ++GFA T + I+ S F+A+ + R Sbjct: 577 QAVAAGYSNAFSAIFDSNLTSLITGVILYVFGTGPIQGFATTWIIGIVCSFFSAVFLTRL 636 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + ++ + +++ L +FM ++I+ +I I F GL Sbjct: 637 VYEHQLKKDRWQNLKYWTGISKNL-MQGKNFKFMSMYKGTFTVAIIAAIVFIGSFFVRGL 695 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 IDF GG V + + VR L + G + G N +R+ Sbjct: 696 AQSIDFTGGRNYVVQFEKSTEPEEVREVLTHIFPGCTTGALSLGTDNKTIRISTNYKIES 755 Query: 630 AQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKG 669 + + + K+ ++ +I ++ VGP +++++ Sbjct: 756 NSPTIDDEAETKLYQGLKKAGLISQKSVEAFKNPDVRAGGSIISSSKVGPSVAKDVTYGA 815 Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG------IEFNLTA 722 I+ VII+ +A+ +YI IRF+ F+ G+ L+LD +G F+L +E + T Sbjct: 816 IISVIIALVAIFLYILIRFRNVAFSAGSTIALVLDALTVIGLFSLLQGLLPFSLEVDQTF 875 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 + AVLT+IGYS+NDKVVV+DR+R+N+KL+ + L + SIN+TL R++ TS + I Sbjct: 876 IGAVLTVIGYSINDKVVVFDRIRENLKLHPK-QDIQVLFNDSINQTLARTINTSFSTLIV 934 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +L + + GG I FA M G++ SSIFIA+PI + K+ R Sbjct: 935 LLVILLLGGKSIQPFAFAMTIGVIFGTLSSIFIASPIAYLLMGKSIKDRR 984 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 99/272 (36%), Gaps = 40/272 (14%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPK---------------- 41 M+N ++ ++ + + S + + + Sbjct: 1 MQNKGIVICTAVLLTLASIFYLSFSVATSYYDSQAAKLKDPIAQQDYKDSVKYLGIYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR-SFLKKEGIGVFSMRQIQN 96 +I LGLDL+GG +++LE+ D + +D +K+ + + + Sbjct: 61 KCLETQIGLGLDLKGGMNVILEISVPDVLETLADHKTDPAFTKSMKQARAEEETSQS--D 118 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 I+L R +L L + S + + + + Sbjct: 119 FISLFLKYYRQ------------NAPGHRLAEIFATQQLQGKINPQSSDSEVEKVLREEV 166 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 AI+ S ++R RID+ G+ + IQ+ + RI++++PG ++P R+R+LL +A + F Sbjct: 167 QAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRKLLQGSANLEF 226 Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 + ++ + +D + + Sbjct: 227 WETYNAEEVIPYLQQLDSRLANDASNDTTTAQ 258 >gi|254701655|ref|ZP_05163483.1| SecD/SecF family protein-export membrane protein [Brucella suis bv. 5 str. 513] Length = 775 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTILGNLSFRAMDDTMSPDDAIRGTPPADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753 Score = 96.7 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTILGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|256060998|ref|ZP_05451155.1| SecD/SecF family protein-export membrane protein [Brucella neotomae 5K33] Length = 775 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 240/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA++ L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASIRLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I +LIY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGILIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGLFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753 Score = 98.2 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|225627381|ref|ZP_03785418.1| protein-export membrane protein SecD [Brucella ceti str. Cudo] gi|254709993|ref|ZP_05171804.1| SecD/SecF family protein-export membrane protein [Brucella pinnipedialis B2/94] gi|254713994|ref|ZP_05175805.1| SecD/SecF family protein-export membrane protein [Brucella ceti M644/93/1] gi|254716947|ref|ZP_05178758.1| SecD/SecF family protein-export membrane protein [Brucella ceti M13/05/1] gi|256031487|ref|ZP_05445101.1| SecD/SecF family protein-export membrane protein [Brucella pinnipedialis M292/94/1] gi|260168621|ref|ZP_05755432.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella sp. F5/99] gi|225617386|gb|EEH14431.1| protein-export membrane protein SecD [Brucella ceti str. Cudo] Length = 775 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753 Score = 97.8 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|327405997|ref|YP_004346835.1| protein-export membrane protein SecD [Fluviicola taffensis DSM 16823] gi|327321505|gb|AEA45997.1| protein-export membrane protein SecD [Fluviicola taffensis DSM 16823] Length = 1005 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 206/803 (25%), Positives = 367/803 (45%), Gaps = 40/803 (4%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123 + + + + + G+ ++++ N++ + + + +A+K+ Sbjct: 207 IAASMDGVELIMSKRINQFGVAQPNIQKESRKNRLYIELPGVQDEATVAEKLQSTANLQF 266 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA---------IEQSMEIIRQRIDQI 174 + + I + +V+ A + + + Sbjct: 267 FETYS-LGDPGIQAGLTNANIISRTPEIKKEVLETASVSDTSGLDTAKVPAPAKPLVAPT 325 Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234 + L + + G S + V FM+ Sbjct: 326 ATGSGIKKSLFEYLKVEPGMGLGMASAENKEEVNAILKRSDIVSLFPENLKFMWSANLED 385 Query: 235 DSDGNQYLV--------EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 ++G++ V K E+ G + A +F+ +T + V ++ G++++ +T Sbjct: 386 GANGSKAYVLYAVKIPENGKAEVGGEDIRSAVRSFNSQTLETTVSLTMSIDGSQKWGVMT 445 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 +NI + +A+ +D V +APV+ AI G +ISG+F+I A LA +L GSLP I Sbjct: 446 GNNINRSVAITMDDVVYSAPVVRNAINGGSTEISGDFSIAEADDLAGLLNGGSLPAPCII 505 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 E+ VG +G ++ G + + + ++M YGK GLVA+ ++ +NVIL L+ Sbjct: 506 KEQTKVGPTIGKENSESGLVSFAFAFLAVFIYMYFYYGKGGLVANIALAINVILIFGCLA 565 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 GA LTL IAGIVL IG AVD+NIL+ ERI+EEN +S S+++GF +A +I D+ Sbjct: 566 SFGAVLTLAGIAGIVLTIGTAVDANILIFERIKEENALGKSAEESVNIGFIKALPSIIDA 625 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 N+ L+ ++L FG G + FA T+ + I S+F+AI I + ++ I K S Sbjct: 626 NVAHLLVAMILKIFGTGEIESFATTLIVGIFTSVFSAIIISKLIITSSIEKGKKVSFSTK 685 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 F I R + SI S+ I + T GL ++F GG GV Sbjct: 686 YTHNMFSNFHFDWI---GKRKYFYIFSITVSVLGIAAMATRGLKQSVEFTGGRTFGVKMQ 742 Query: 587 RPVDLSVVRSNLESLQIG------DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + D +R +E+ + ++ +N N + Y D+ A +V +K+ Sbjct: 743 KAADTETIRKAMETYFVEKNGEKSNVEIKNKSNSYNVEITTNYLLADAAATAKVEGKMKE 802 Query: 641 KIT---EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGA 696 E + +T + +S E+ + + ++ IA+ YI+IRF +W ++LGA Sbjct: 803 AFETIKEKTGEIQVTDTRSIMASVSEEMWSSATLSITLALIAIFAYIFIRFGQWQYSLGA 862 Query: 697 ITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 I L D+ L FAL F ++ N +AAVLT+IGYS+ND V+V+DR+R+++ Sbjct: 863 ILGLAHDVLFVLSVFALLHGILPFSLDVNQAFIAAVLTVIGYSMNDTVIVFDRIRESLNF 922 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 +++I+ ++N+TL R+ TSM F+ +L M ++GG I F + G+V+ Sbjct: 923 DKNQHEAKEVINDALNKTLSRTFNTSMILFVVLLIMFLFGGPAIKGFLFALLIGVVIGTY 982 Query: 811 SSIFIAAPILLFI-YDWRAKNAR 832 SS+ +A PIL+ ++ K ++ Sbjct: 983 SSLCVATPILMDFTKTFKVKKSK 1005 Score = 46.2 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 64/477 (13%), Positives = 142/477 (29%), Gaps = 21/477 (4%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 ++ GLDL GG + +E+D FV + + D F K ++ Sbjct: 107 RSLAFGLDLVGGMSVTMEIDVPKFVETYARNKRD--LKFKKAFDAAYYTHTTKGGDFVDL 164 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 F KEN DK+ V S + K+ ++ + I+ +++ Sbjct: 165 FISEFEKENPKDKL------VRSLAISEVKELSYNSSNSD------VASFFHDKIAASMD 212 Query: 162 QSMEIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP- 219 I+ +RI+Q G+++ IQ+ +R+ I+LPG QD + + + L +TA + F + Sbjct: 213 GVELIMSKRINQFGVAQPNIQKESRKNRLYIELPGVQDEATVAEKLQSTANLQFFETYSL 272 Query: 220 -NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG 278 + + + + + + V + +S P + + Sbjct: 273 GDPGIQAGLTNANIISRTPEIKKEVLETASVSDTSGLDTAKVPAPAKPLVAPTATGSGIK 332 Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG 338 F + + + + ++ ++ + F A Sbjct: 333 KSLFEYLKVEPGMGLGMASAENKEEVNAILKRSDIVSLFPENLKFMWSANLEDGANGSKA 392 Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398 + + I E + + L M + + V + Sbjct: 393 YVLYAVKIPENGKAEVGGEDIRSAVRSFNSQTLETTVSLTMSIDGSQKWGVMTGNNINRS 452 Query: 399 ILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR 458 + + A + +I G I D +I + + + ++ Sbjct: 453 VAITMDDVVYSAPVVRNAINGGSTEISG--DFSIAEADDLAGLLNGGSLPAPCIIKEQTK 510 Query: 459 AYSTIF--DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513 TI +S + + ++ + I I + F Sbjct: 511 VGPTIGKENSESGLVSFAFAFLAVFIYMYFYYGKGGLVANIALAINVILIFGCLASF 567 >gi|265983986|ref|ZP_06096721.1| export membrane protein secD [Brucella sp. 83/13] gi|264662578|gb|EEZ32839.1| export membrane protein secD [Brucella sp. 83/13] Length = 785 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 57 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLATTA-----NIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKQVPKRRL 471 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763 Score = 97.1 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + I L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLISLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLATTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|153009664|ref|YP_001370879.1| bifunctional preprotein translocase subunit SecD/SecF [Ochrobactrum anthropi ATCC 49188] gi|151561552|gb|ABS15050.1| protein-export membrane protein SecD [Ochrobactrum anthropi ATCC 49188] Length = 759 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 242/719 (33%), Positives = 405/719 (56%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + + L L + + + + +E++ I+RQR++++G Sbjct: 30 RETLAKLPNFLPKQQIALGLDLSGGSRLVLQV-----QNPGRGELERTANIMRQRLEELG 84 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 + ++ ++I +++PG D L+ +L SF V S + G Sbjct: 85 YGKPLVEEENRNQIRVEVPGVYDAQLLKDILSVRGNFSFRAVDSTMSPDDAIRGTPPADS 144 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YLV+ + ++G ++ A A +PV+ ++ D+ G + E T Sbjct: 145 EIIYSYDDPPVGYLVKKQPILTGANVTDAKATLSDDDSEPVITLTLDDAGRKNLAEATSH 204 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 +G A+V+D ++++AP +++ + + + QISG F ++ A +A +LR+G+LP + ++E Sbjct: 205 LVGGSFAIVVDNQIVSAPAVDEKLDTNELQISGAFDLQAANNMAVVLRSGALPQDVTVLE 264 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +L+ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 265 ERTIASALGEDYASAAALAALLAALLVGLFMVLSYGILGVIAMVALAVNIIILTAILSLI 324 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIIDANL 384 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAVGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A + Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARSG 501 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ + L L I ++ LV + Q A+ V ++ E P Sbjct: 502 DANIEDITERLTELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLR---GEFEP 558 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q E+VGP +S +L R G++ VI+S I + IY+W+RF+W ALGA+ + + D+ Sbjct: 559 DYSFQRVEVVGPTVSEQLSRAGVLAVILSLIGIFIYVWVRFRWQLALGAVLSTLHDVIIL 618 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N+++Y S +ID SIN+ Sbjct: 619 AGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRVY-KSAPLPAIIDASINQ 677 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GG+ I SFA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 678 TLSRTLLTSFVTFLAHIPLYAFGGADIRSFALALSVGIIVASYSSIFIAAPLLVQFGLK 736 Score = 97.1 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 3/171 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + +IA PNF + L + P+ +PK +I+LGLDL GGS LVL+V Sbjct: 5 SRWKSALIWLAVLVSFIIASPNFFSRETLAKLPNFLPKQQIALGLDLSGGSRLVLQVQNP 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGV 122 G L+ ++ +R L++ G G + + N+I + + + D +++ Sbjct: 65 G--RGELERTANIMRQRLEELGYGKPLVEEENRNQIRVEVPGVYDAQLLKDILSVRGNFS 122 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 ++ + + T S ++ + V +Q + D Sbjct: 123 FRAVDSTMSPDDAIRGTPPADSEIIYSYDDPPVGYLVKKQPILTGANVTDA 173 >gi|265990990|ref|ZP_06103547.1| protein-export membrane protein secD [Brucella melitensis bv. 1 str. Rev.1] gi|263001774|gb|EEZ14349.1| protein-export membrane protein secD [Brucella melitensis bv. 1 str. Rev.1] Length = 785 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 57 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763 Score = 96.3 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNFL + L P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLVSLIIASPNFLSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|163843163|ref|YP_001627567.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella suis ATCC 23445] gi|163673886|gb|ABY37997.1| protein-export membrane protein SecD [Brucella suis ATCC 23445] Length = 775 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 239/721 (33%), Positives = 398/721 (55%), Gaps = 20/721 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKIDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSTRVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLKS 754 Query: 828 A 828 Sbjct: 755 R 755 Score = 96.3 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KIDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|325283434|ref|YP_004255975.1| protein-export membrane protein SecD [Deinococcus proteolyticus MRP] gi|324315243|gb|ADY26358.1| protein-export membrane protein SecD [Deinococcus proteolyticus MRP] Length = 762 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 203/685 (29%), Positives = 352/685 (51%), Gaps = 18/685 (2%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGT 208 +++ I+ R+D +G++E T+ + R++++ PG ++R ++G Sbjct: 81 TTKDYTREDLDKVKTIVENRVDALGVAEPTVTVTSNDRVVVEAPGATPEIQQQVRNVIGQ 140 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 TA++ F V + + + + G + V+ +G + A A D + Sbjct: 141 TARLEFRIVKDGATPDSTLAAEKPA--TGGYKLSDLGPVQATGEIIADARAATDQSG-RW 197 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 VV E GA++F E T N+GK +A+VLD ++ + INQ QISG+F + A Sbjct: 198 VVAFDNTEEGAKKFGEFTGPNVGKLMAIVLDDQIQSVATINQ-QLFRGVQISGDFDADEA 256 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 LA +L +GSLPI++ ER++G LG+D+I G A + GL + + + YG W Sbjct: 257 SQLALVLESGSLPIQVKTAAERSIGPSLGADAIQSGMTAGLIGLGAVFVMLFAYYGLWLG 316 Query: 389 VADFSIF-LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + + + + LL G+TLTLP IAG+VL IG AVD N++ ER +EE R+ + Sbjct: 317 LVGALGLLFSAAILMGLLGGFGSTLTLPGIAGLVLTIGAAVDGNVISFERFKEERRRGKG 376 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 V ++ + + TI D N T LI+ L+ F G VRGFA+ + L S F+ + Sbjct: 377 VRQAIAKAYEHSTLTILDVNATHLISAFALYQFSSGPVRGFAVAVIAGTLASTFSNLVFA 436 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 + MM ++ + P I FM+ G+S L ++ + T Sbjct: 437 KWMMTWLAQR--------FPNLSAPQWITEPRINFMKPAALIAGLSGLLALGGAAYVATQ 488 Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 GLNYG+DF+ G + + V +R+ + + ++ QN +++ + ++ Q Sbjct: 489 GLNYGVDFRSGTTVTARFDGGVTPEQIRAQVVAAGAEGVTPQNTVIQQDIVPGIEGQQYT 548 Query: 628 SVAQTRVLEMVKKKITEIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 V ++ +Q++E VGP + EL R I +++ +LIY+W Sbjct: 549 IKVPELSAAEVSAVGQQLASLSGGEVQSSETVGPAVGAELTRNTIYAMLLGLTGILIYVW 608 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 RF LG+I + D+ +G +AL G+EFN+ VAA+LTLIGYS+ND +++ DR+R Sbjct: 609 FRFDLVMGLGSILATVHDVAIAVGIYALLGLEFNIATVAAILTLIGYSLNDSIIISDRIR 668 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 +N++ S+RD+++ SIN+TL R+V TS++ + ++ + ++GG V+ F++ + GI Sbjct: 669 ENLRAM-RGQSYRDIVNTSINQTLSRTVMTSLSTMLPLVALLLFGGPVLRDFSLILLIGI 727 Query: 806 VVAASSSIFIAAPILLFIYDWRAKN 830 +V SSI+I AP+++F + R + Sbjct: 728 IVGTYSSIYIVAPLVVFWNERRDRR 752 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 28/248 (11%), Positives = 72/248 (29%), Gaps = 7/248 (2%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +PW +L + L + + + ++LGLDLRGG + LE Sbjct: 23 RPSPWTGLLLLVTFLTALAFIWRPWQHPDTPTQLYN-DQYQAVTLGLDLRGGLRIELEPT 81 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRF--KENIADKVTLF 118 D+ L + + + G+ ++ +++ + + ++ + + + Sbjct: 82 TKDYTREDLDKVKTIVENRVDALGVAEPTVTVTSNDRVVVEAPGATPEIQQQVRNVIGQT 141 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + + + + + D A + + R DQ G Sbjct: 142 ARLEFRIVKDGATPDSTLAAEKPATGGYKL---SDLGPVQATGEIIADARAATDQSGRWV 198 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + +L ++ S + + + G ++ Sbjct: 199 VAFDNTEEGAKKFGEFTGPNVGKLMAIVLDDQIQSVATINQQLFRGVQISGDFDADEASQ 258 Query: 239 NQYLVEDK 246 ++E Sbjct: 259 LALVLESG 266 >gi|265994827|ref|ZP_06107384.1| protein-export membrane protein secD [Brucella melitensis bv. 3 str. Ether] gi|262765940|gb|EEZ11729.1| protein-export membrane protein secD [Brucella melitensis bv. 3 str. Ether] Length = 785 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 57 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763 Score = 97.1 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|325860198|ref|ZP_08173323.1| export membrane protein SecD [Prevotella denticola CRIS 18C-A] gi|327312702|ref|YP_004328139.1| export membrane protein SecD [Prevotella denticola F0289] gi|325482285|gb|EGC85293.1| export membrane protein SecD [Prevotella denticola CRIS 18C-A] gi|326944299|gb|AEA20184.1| export membrane protein SecD [Prevotella denticola F0289] Length = 1007 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 205/835 (24%), Positives = 371/835 (44%), Gaps = 69/835 (8%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120 + V + + + + + + G+ ++++ + ++ + R E + + Sbjct: 164 EEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSAN 223 Query: 121 GVNSKLN----------------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164 + + + + A + + Sbjct: 224 LEFWETYNNQEVAPYLAQLDQRLANGDTKADTVAADSTRKAQAKPAATPKFALKADKSAA 283 Query: 165 EIIRQRIDQIGISESTIQRLGSHRIL----IQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 + + + L + + +D + + +L+ + Sbjct: 284 AGEDAQTAALKKMHPLLSMLQTIPGDALSLVGYASVRDTAAINKLIHSPLAKQVLPSDLK 343 Query: 221 NSKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 ++ L + + + G + A FD +P V ++ + Sbjct: 344 LLWGAKPADGLNKKNVYELYALKITTADGRAPMEGDVVTDAKDQFDQFG-RPEVSMTMNS 402 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR + +T+ N+GK +A+VLDG V +AP ++ I G++ I GNFTIE LA L+ Sbjct: 403 EGAREWAALTKANVGKAIAIVLDGVVYSAPRVDGEIDGGQSSIRGNFTIEDTKDLANTLK 462 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIF 395 +G +P IV+E VG LG+ SI +G + V VL++L+MIV+Y G++A+ ++ Sbjct: 463 SGRMPAPAKIVQEEVVGPTLGAQSIQQGLVSFVIAFVLLMLYMIVMYNVIPGMMANLALI 522 Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455 N+ TL +L+ + LT+P IAGIVL +G AVD+N+L+ ERI+EE R + + +L G Sbjct: 523 ANLFFTLGVLASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELRLGKGMKQALHEG 582 Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 +S A+S IFDSN+T+LI V+L G G +RGFA T + I+IS FTA+ + R + + Sbjct: 583 YSNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTWIIGIIISFFTAVFLTRLVFENRV 642 Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575 K ++ + F+ + + + I GL+ IDF Sbjct: 643 SNDKWLNLTFSTGFSKNF-MQGKNFHFLSMYKRSFTVWGVAVVICIVSFVVRGLSRSIDF 701 Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIG-----------------DISFQNFDGEKNFL 618 GG V N+P + VR + + + N+ Sbjct: 702 TGGRNYVVTLNKPTQVEDVRKVMNGAFVNTVGEKAGKPATTNVIALGTDGKTVRISTNYN 761 Query: 619 VRLQYQPGDSVAQTRVLEMV------------KKKITEIVPLSTIQNTEIVGPKISRELI 666 + D A+T + + + K +I +I + VGP I++ + Sbjct: 762 IESNDPLEDDKAETILYKALKRGGFVSQTSVANFKNPDIREGGSIIQSAKVGPSIAKNIT 821 Query: 667 RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFN 719 + V+++ + +YI +RF+ F++G+I L+LD T +GFF+L F +E + Sbjct: 822 YNAFLSVLLAIFFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGFFSLCYGWIGFSLEID 881 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTS 776 T + A+LT+IGY +ND VVVYDR+R+N++ + +++ + SIN+TL R++ TS Sbjct: 882 QTFIGAILTVIGYDINDTVVVYDRIRENLRNHRHNLAKADIQEIFNSSINQTLSRTINTS 941 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I ++ + + GG I SFA M GI++ SSIFIA+P+ + R + Sbjct: 942 VSTLIVLVSIFILGGDSIRSFAFAMIIGIIIGTLSSIFIASPVAYLVLGKRIEKR 996 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 95/253 (37%), Gaps = 40/253 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41 M+N ++ + ++ + + + Sbjct: 1 MQNKGLVICVAVLLTLASIFYLSFSVATSYYDSQAAKIKDPIAQQDYKDSVKYLGIYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQN 96 +I LGLDL+GG ++VLE+ D V+ D + + + + ++ + Sbjct: 61 KCLETQIGLGLDLKGGMNVVLEISVPDVVDVLADHKQDAAYQKAMAEAKQEEMTSQK--D 118 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 ITL KV K + +++ E + + + + Sbjct: 119 FITLFID-------AYHKVAPGHSLAEVFATQQLKGKVSTQSSDSE-----VEKALREEV 166 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 + AI+ S ++ RIDQ G+ + IQ+ R+++++PG ++P R+R+LL +A + F Sbjct: 167 ASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEF 226 Query: 215 HKVLPNNSKKGFM 227 + N ++ Sbjct: 227 WETYNNQEVAPYL 239 >gi|261222076|ref|ZP_05936357.1| protein-export membrane protein secD [Brucella ceti B1/94] gi|265998041|ref|ZP_06110598.1| protein-export membrane protein secD [Brucella ceti M490/95/1] gi|260920660|gb|EEX87313.1| protein-export membrane protein secD [Brucella ceti B1/94] gi|262552509|gb|EEZ08499.1| protein-export membrane protein secD [Brucella ceti M490/95/1] Length = 785 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 397/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 57 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ + V+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQSVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763 Score = 98.2 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQSVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|282859925|ref|ZP_06269013.1| protein-export membrane protein SecD [Prevotella bivia JCVIHMP010] gi|282587328|gb|EFB92545.1| protein-export membrane protein SecD [Prevotella bivia JCVIHMP010] Length = 995 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 207/840 (24%), Positives = 375/840 (44%), Gaps = 75/840 (8%) Query: 61 DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIAD 113 + + + + D +R+ + + G+ ++++ + ++ + R E + Sbjct: 144 EVEKALRAEVTAAIDNSYNVVRNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRK 203 Query: 114 KVTLFLQGVNSKL-----------------------NVDPKKNLLVTTTEKEISIVLSQN 150 + + + + TT I L+ Sbjct: 204 LLQGSANLEFWETYNNQEVAPYLQQLDQRLANGDTKPDTTATDSVKATTASTNKIALTAA 263 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL---G 207 + + Q + G ++ +D + + +L+ Sbjct: 264 KKAFGKAAGASKEAAGAEALKKQHPLLSRLQLIPGDALSVVGYANVRDTAAINKLIHSQL 323 Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTH 266 + L ++K V+ + + + + + G + A FD Sbjct: 324 AKQVLPTDLRLLWSAKPADNIQVKNTFELHALKVTTSDGRAPLEGDVITDAKDQFDQFGK 383 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 P V +S + GAR + +T+ N+GK +AVVLDG V TAP IN I G++ ISG+FT+ Sbjct: 384 -PEVSMSMNSEGAREWAALTKANVGKAIAVVLDGVVYTAPRINTEIDGGQSSISGSFTVA 442 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK- 385 LA L++G +P IV+E VG LG+ SI +G + VL++ +MI +YG Sbjct: 443 DTKDLANTLKSGRMPAPAKIVQEEVVGPTLGAQSIQQGLISFAIAFVLLMFYMIAMYGFI 502 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A+ ++ N+ TL +++ + LT+P IAGIVL +G AVD+N+L+ ERI+EE R Sbjct: 503 PGMMANSALIANLFFTLGIMASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELRLG 562 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 + + +L G+ A+S IFDSN+T+LI V+L G G +RGFA T+ + ++IS FTA+ Sbjct: 563 KGMKQALHEGYKNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTLIIGLIISFFTAVF 622 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + R + + K + L+ + +++FM+ I + + I Sbjct: 623 LTRLVFESRVNNDKWLHLSFTTGISKNLLQN-TSMRFMQMHKKSFTIWGIAIVICIVSFA 681 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG--------------------- 604 GL+ I+F GG + ++P + +R + + Sbjct: 682 VRGLSRSIEFTGGRNYVITLSKPAPVEDIRKIFDGAFVNTEGANKGKAATTTVIAIGTDG 741 Query: 605 -------DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 + + + + + + Y + K K +I +I + V Sbjct: 742 KTIRVSTNWNVDSSKDDDDQAENILYATLKKHNYVSQESVAKFKNPDIREGGSIIQSAKV 801 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL--- 713 GP I++ + + V ++ + + +YI +RF+ F++G+I LILD T +G F+L Sbjct: 802 GPSIAKNITTNAFISVGLAIVFIFLYILLRFRNIGFSVGSIVGLILDTTIVVGIFSLCHG 861 Query: 714 ---FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINE 767 F +E + T + A+LT+IGY +ND VVV+DR+R+NM + + + L ++SINE Sbjct: 862 WIGFSLEIDQTFIGAILTVIGYDINDTVVVFDRIRENMGKHKSTLAKYGLQRLFNESINE 921 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + I + + + GG SF+ M GI++ SSIFIA+PI + + Sbjct: 922 TLSRTINTSFSTLIVLFAIFILGGDSTRSFSFAMIIGIIIGTLSSIFIASPIAYIVMGHK 981 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 87/180 (48%), Gaps = 7/180 (3%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E+VGP + + I++G++ I+ + ++ Y+ + + + A + LI ++ TLG A Sbjct: 464 QEEVVGPTLGAQSIQQGLISFAIAFVLLMFYMIAMYGFIPGMMANSALIANLFFTLGIMA 523 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + +A ++ +G +V+ V++Y+R+++ ++L + + + Sbjct: 524 SFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELRL---GKGMKQALHEGYKNAFSAI 580 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++ + I+ + + V G I FA + G+++ S F A + +++ R N + Sbjct: 581 FDSNLTSLITGVILLVTGTGPIRGFATTLIIGLII----SFFTAVFLTRLVFESRVNNDK 636 Score = 65.1 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 15/190 (7%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 + +I LGLDL+GG ++VLE+ D V+ +D +++K Q Sbjct: 51 ETQIGLGLDLKGGMNVVLEISVPDVVDMLADHKTDP--AYVKSLNEAKEQELAGQGNFIS 108 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 F + K K+ +L + EK + ++ AI Sbjct: 109 LFIKAYQKNAPGHKLAEIF--ATQQLKGKVSTQSTDSEVEKALRAEVTA---------AI 157 Query: 161 EQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218 + S ++R RIDQ G+ + IQ+ R+++++PG ++P R+R+LL +A + F + Sbjct: 158 DNSYNVVRNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEFWETY 217 Query: 219 PNNSKKGFMF 228 N ++ Sbjct: 218 NNQEVAPYLQ 227 >gi|15806822|ref|NP_295545.1| bifunctional preprotein translocase subunit SecD/SecF [Deinococcus radiodurans R1] gi|6459594|gb|AAF11371.1|AE002022_4 protein-export membrane protein, putative [Deinococcus radiodurans R1] Length = 768 Score = 328 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 209/686 (30%), Positives = 366/686 (53%), Gaps = 17/686 (2%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGT 208 +++ +I RI+ +G++E T+ G R+++++PG R R ++ Sbjct: 87 ESGTATRDELDRVKTVIENRINALGVAEPTVTVSGGKRVVVEIPGATPAVQDRARSIIQQ 146 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 TA++ F V + + S G V +G + AT+ D ++ + Sbjct: 147 TARLEFRIVNSDAKPDPAVREKNPR--SSGYTLAQLGPVVATGETIADATSGTDQRSGQW 204 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 VV+ + GA+ F + T N+ + +AVVLD ++ + INQ QISGNFT E A Sbjct: 205 VVNFKTTDAGAKTFGDFTGKNVNRLMAVVLDDQIQSVATINQ-RLFRDIQISGNFTPEEA 263 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWG 387 LA +L++G+LPIK+ ER++G LG+D+I G A + G+ L+ + + YG +G Sbjct: 264 SQLALVLKSGALPIKIVTAAERSIGPSLGADAIRSGAIAALVGIGLVFVMLFAYYGLWFG 323 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 LV + + I+ L +L GATLTLP IAG+VL IG AVD N++ ERI+EE + + Sbjct: 324 LVGALGLLFSSIIILGILGGFGATLTLPGIAGLVLTIGAAVDGNVISFERIKEELARGKG 383 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 + ++ G+ + + I D N + L++ + L+ + GAV+GFA+T+ + ++ S F+ + Sbjct: 384 IKNAIGAGYEHSTAAILDVNASHLLSALALYNYSTGAVKGFAVTLIIGVIASTFSNLVFA 443 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 + M ++ + + P FM+ +S+L ++ L+ T Sbjct: 444 KWFMQWLAQRR--------PNMSAPQWIKHTHFDFMKPAKVITTLSVLLALAGAALVATR 495 Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 GLNYG+DF G L +R V +R+++ + ++ Q+ +++ Q Q Sbjct: 496 GLNYGVDFAPGTTLTARVDRQVTTEQLRNSVIGAGVSKVTGQSATIQRDTTPGQQGQNFT 555 Query: 628 SVAQTRVLEMVKKKITEIV--PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 VK+ I P + +E VGP + +EL +K I V++ +L+Y+ Sbjct: 556 VKVPELNDAEVKQIGAAIGKLPQGQVLASETVGPAVGKELTQKTIYAVLLGLGLILVYVG 615 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 RF + LG+I I D+ +G F+L G+EF + +VAA+LTLIGYS+ND ++V DR+R Sbjct: 616 FRFDFIMGLGSIIAAIHDVAIAMGLFSLLGLEFTVASVAALLTLIGYSLNDSIIVSDRIR 675 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 +NMK S+R++++ +IN+TL R+V TS++ + ++ + ++GG V+ F++ + GI Sbjct: 676 ENMKTM-RGHSYREIVNAAINQTLSRTVMTSVSTMLPLISLLIFGGPVLRDFSLILLVGI 734 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831 +V SSI+I AP++++ +WR KN Sbjct: 735 LVGTYSSIYIVAPLVVYFEEWRDKNR 760 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 22/208 (10%), Positives = 60/208 (28%), Gaps = 7/208 (3%) Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSF 102 ++LGLDL+GG + L + L + + + G+ ++ ++ + Sbjct: 70 MTLGLDLKGGLRIELAPESGTATRDELDRVKTVIENRINALGVAEPTVTVSGGKRVVVEI 129 Query: 103 ADSRFK--ENIADKVTLFLQGVNSKLNVDP-KKNLLVTTTEKEISIVLSQNNIDQVISHA 159 + + + + +N D + + L+Q Sbjct: 130 PGATPAVQDRARSIIQQTARLEFRIVNSDAKPDPAVREKNPRSSGYTLAQLGPVVATGET 189 Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219 I + QR G + + ++ +RL ++ S + Sbjct: 190 IADATSGTDQRS---GQWVVNFKTTDAGAKTFGDFTGKNVNRLMAVVLDDQIQSVATINQ 246 Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKV 247 + + G ++ +++ Sbjct: 247 RLFRDIQISGNFTPEEASQLALVLKSGA 274 >gi|17987359|ref|NP_539993.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis bv. 1 str. 16M] gi|256044565|ref|ZP_05447469.1| protein translocase subunit SECD / protein translocase subunit SECF [Brucella melitensis bv. 1 str. Rev.1] gi|17983044|gb|AAL52257.1| protein translocase subunit secd / protein translocase subunit secf [Brucella melitensis bv. 1 str. 16M] Length = 775 Score = 328 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753 Score = 95.9 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNFL + L P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFLSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|225852404|ref|YP_002732637.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis ATCC 23457] gi|256113438|ref|ZP_05454279.1| protein-export membrane protein SecD [Brucella melitensis bv. 3 str. Ether] gi|225640769|gb|ACO00683.1| protein-export membrane protein SecD [Brucella melitensis ATCC 23457] Length = 775 Score = 328 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753 Score = 96.7 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|256159613|ref|ZP_05457375.1| SecD/SecF family protein-export membrane protein [Brucella ceti M490/95/1] gi|256254893|ref|ZP_05460429.1| SecD/SecF family protein-export membrane protein [Brucella ceti B1/94] Length = 775 Score = 328 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 397/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ + V+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQSVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753 Score = 97.8 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQSVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|261314362|ref|ZP_05953559.1| export membrane protein secD [Brucella pinnipedialis M163/99/10] gi|261303388|gb|EEY06885.1| export membrane protein secD [Brucella pinnipedialis M163/99/10] Length = 785 Score = 328 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 397/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 57 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ L M++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLVMVLSYGILGVIALVALVVNIIILTAVLSLI 351 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763 Score = 98.2 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|189461655|ref|ZP_03010440.1| hypothetical protein BACCOP_02318 [Bacteroides coprocola DSM 17136] gi|189431627|gb|EDV00612.1| hypothetical protein BACCOP_02318 [Bacteroides coprocola DSM 17136] Length = 994 Score = 328 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 211/832 (25%), Positives = 380/832 (45%), Gaps = 62/832 (7%) Query: 58 LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADK 114 +E + V + + LR+ + + G+ +++ ++ +I + + E + Sbjct: 160 VEAVLREEVKAAVDNSYNVLRTRIDRFGVAQPNIQTLEGKMGRIMVELPGIKEPERVRKL 219 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 + + + ++ + + +L+ D V + + + I + Sbjct: 220 LQGSANLEFWETFEAKEIVPVLASADSRARDLLAGTVTDSVQTDTVATAQPAISAKDSLA 279 Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT-------------TAKMSFHKVLPNN 221 + S + Q+ E + QL + TA+++ +P Sbjct: 280 AALKGETASNTSGANIEQMKKEHPLLSVLQLNQSGVGAIVAYADRNDTAEVNRILSMPEI 339 Query: 222 S--------------KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 F R + + G + A ++D Sbjct: 340 QKQLPRDLKLMWGVAAADFDKSGRIFELYAIKSTERNGRAPLEGDVVTDARDSYDQYNK- 398 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 P V +S + GARR+ +T+ N+G+ +A+ LDG V +AP +N IP G+++ISG+FT E Sbjct: 399 PCVSMSMNTEGARRWAALTKQNVGRSIAIALDGYVYSAPRVNGEIPGGQSEISGSFTPEQ 458 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-W 386 LA +L++G +P IV+E VG LG +SI +G + V LV+++++M +YG Sbjct: 459 TKDLANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIISFVVALVVLMIYMCAMYGFIP 518 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G++A+ ++F+N TL +LS A LT+ IAG+VL +G+AVD+N+L+ ER +EE + + Sbjct: 519 GMIANCALFVNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELKAGK 578 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 +L G++ A+S IFDSN+T++I ++LF FG G +RGFA T+ + IL S FTA+ + Sbjct: 579 GTKQALSEGYANAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILCSFFTAVFL 638 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566 R + + K ++ L + FM I + I F Sbjct: 639 TRLVYEHYMGKDKWLNLTFTTGISKNL-MQNVHYNFMGVTKRSFIIWGAVIVVCIISFFA 697 Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 GL+ IDF GG V + V VRS L+ G +R+ Sbjct: 698 RGLSQSIDFTGGRNFVVQFEQVVQPETVRSLLQPKVGDANVQAIALGTDGKTIRVTTNYR 757 Query: 627 DSVAQTRVLEMVKKKI---------------------TEIVPLSTIQNTEIVGPKISREL 665 + +++ + + +I +++ VGP I+ ++ Sbjct: 758 IEEDSPTIDAEIEEFLYDALKEGNLLGEGTTLEIFIDRDNRTGGSIISSQKVGPSIADDI 817 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718 + V+++ IA+ +YI +RF+ +++GA L +D +G +++ F +E Sbjct: 818 KTSAVWSVVLALIAIGLYILVRFRNIAYSVGATVALAVDTLLIIGMYSIWYGILPFSLEI 877 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + T + A+LT IGYS+NDKVV++DR+R+ LY L + S+N TL R++ TS++ Sbjct: 878 DQTFIGAILTAIGYSINDKVVIFDRVREFFHLYPKR-DRAKLFNDSLNTTLCRTINTSLS 936 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 I +L + + GG I SFA M G+V+ SS+F+AAP+ + K+ Sbjct: 937 TLIVLLSILILGGDSIRSFAFAMILGVVIGTLSSLFVAAPVAYLTMGHKMKD 988 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 98/244 (40%), Gaps = 40/244 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ-----------------SMLDRFPSAM---- 39 M+N ++ + ++ + + +F+ + + + Sbjct: 1 MQNKGFVKVFAILLTLVCVFYLSFSFVTRYHMKKAAEDPKGETHYLDSVQNEKVWLGSYT 60 Query: 40 ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95 + I LGLDL+GG +++LEV D V +DE + E + Sbjct: 61 LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKTDEAFNKAVAE-AAKQQVTSQD 119 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + IT+ + K+ + K + +T+ E+ VL + Sbjct: 120 DFITIFIRE-------YKKLAPEGKLAELFATQQLKDKVTTRSTDAEVEAVLREE----- 167 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 + A++ S ++R RID+ G+++ IQ RI+++LPG ++P R+R+LL +A + Sbjct: 168 VKAAVDNSYNVLRTRIDRFGVAQPNIQTLEGKMGRIMVELPGIKEPERVRKLLQGSANLE 227 Query: 214 FHKV 217 F + Sbjct: 228 FWET 231 >gi|62289836|ref|YP_221629.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella abortus bv. 1 str. 9-941] gi|260545417|ref|ZP_05821158.1| vacuolar H+-transporting two-sector ATPase [Brucella abortus NCTC 8038] gi|88941986|sp|Q2YNM0|SECD_BRUA2 RecName: Full=Protein-export membrane protein secD gi|90183178|sp|P0C117|SECD_BRUAB RecName: Full=Protein-export membrane protein secD gi|62195968|gb|AAX74268.1| protein-export membrane protein, SecD/SecF family [Brucella abortus bv. 1 str. 9-941] gi|260096824|gb|EEW80699.1| vacuolar H+-transporting two-sector ATPase [Brucella abortus NCTC 8038] Length = 758 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L+ + L L + + + + + + A I+RQR++++G Sbjct: 30 RETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 85 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 144 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+++ A+LSL+ Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIVILTAVLSLI 324 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736 Score = 97.8 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L+ P +PK ++SLGLDL GGS L+L+V Sbjct: 5 SRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 65 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 123 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238 Query: 243 VE 244 + Sbjct: 239 FD 240 >gi|325268541|ref|ZP_08135171.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella multiformis DSM 16608] gi|324989069|gb|EGC21022.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella multiformis DSM 16608] Length = 1007 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 194/834 (23%), Positives = 362/834 (43%), Gaps = 67/834 (8%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120 + V + + + + + + G+ ++++ + ++ + R E + + Sbjct: 164 EEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSAN 223 Query: 121 GVNSKLN-----------------------VDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 + + + D+ + Sbjct: 224 LEFWETYNNQEVTPYLAQLDQRLANGDTKADTVAADSTRKAQANPAATPKFALKADKGAA 283 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 + +++ + + ++ S + ++L + Sbjct: 284 AGEDVQTAALKKMHPLLSMLQTIPGDALSLVGYASVRDTAAINKLIHSPLAKQVLPSDLK 343 Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 L +K + + + + D + + + +P V ++ + Sbjct: 344 LLWGAKPADGLNKKNVYELYALKITTADGRAPMEGDVVTDAKDQFDQFGRPEVSMTMNSE 403 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337 GAR + +T+ N+GK +A+VLDG V +AP +N I G++ I+GNFTIE LA L++ Sbjct: 404 GAREWAALTKANVGKAIAIVLDGVVYSAPRVNGEIDGGQSSITGNFTIEDTKDLANTLKS 463 Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFL 396 G +P IV+E VG LG+ SI +G + VL++++MIV+Y G++A+ ++ Sbjct: 464 GRMPAPAKIVQEEVVGPTLGAQSIQQGLVSFAIAFVLLMIYMIVMYNVIPGMMANLALIA 523 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 N+ TL +L+ + LT+P IAGIVL +G AVD+N+L+ ERI+EE R + + +L G+ Sbjct: 524 NLFFTLGVLASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELRLGKGMKQALHEGY 583 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 A+S IFDSN+T+LI V+L G G +RGFA T + I+IS FTA+ + R + + Sbjct: 584 GNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTWIIGIIISFFTAVFLTRLVFENRVS 643 Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576 K + + + F+ + + + + GL+ IDF Sbjct: 644 NDKWLN-QMFTTAVSKNFMQNKKFHFLSMYRRSFTVWGVAIVICVVSFVVRGLSRSIDFT 702 Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 GG V N+P + VR + + + ++ L T Sbjct: 703 GGRNYVVTLNKPTQVEEVRKVMNGAFVNTVGENAGKPANTNVIALGTDGKTVRISTNYNI 762 Query: 637 MVKKKITEIVPLSTIQN-----------------------------TEIVGPKISRELIR 667 + + + + + + VGP I++ + Sbjct: 763 ESNDPLEDDKAETILYSALKKGGFVSQTSVANFKNPDIREGGSIIQSAKVGPSIAKNITY 822 Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNL 720 + V+++ + +YI +RF+ F++G+I L+LD T +GFF+L F +E + Sbjct: 823 NAFMSVLLAIFFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGFFSLCYGWIGFSLEIDQ 882 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSM 777 T + A+LT+IGY +ND VVVYDR+R+N++ + + + + SINETL R++ TS+ Sbjct: 883 TFIGAILTVIGYDINDTVVVYDRIRENLRKHKHNLLKADIQKIFNDSINETLSRTINTSV 942 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + I ++ + + GG I SFA M GI++ SSIFIA+P+ + + + Sbjct: 943 STLIVLVSIFILGGDSIRSFAFAMIIGIIIGTLSSIFIASPVAYLVLGKKIEKR 996 Score = 65.5 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 95/253 (37%), Gaps = 40/253 (15%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41 M+N ++ + ++ + + + Sbjct: 1 MQNKGLVICVAVLLTLASIFYLSFSVATSYYDSQAAKIKDPIAQQDYKDSVKYLGIYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQN 96 +I LGLDL+GG ++VLE+ D V+ D + + + + ++ + Sbjct: 61 KCLETQIGLGLDLKGGMNVVLEISVPDVVDVLADHKQDAAYQKAMAEARQEEMTSQK--D 118 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 ITL KV K + +++ E + + + + Sbjct: 119 FITLFID-------AYHKVAPGHSLAEVFATQQLKGKVSTQSSDSE-----VEKALREEV 166 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 + AI+ S ++ RIDQ G+ + IQ+ R+++++PG ++P R+R+LL +A + F Sbjct: 167 ASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEF 226 Query: 215 HKVLPNNSKKGFM 227 + N ++ Sbjct: 227 WETYNNQEVTPYL 239 >gi|161618851|ref|YP_001592738.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella canis ATCC 23365] gi|161335662|gb|ABX61967.1| protein-export membrane protein SecD [Brucella canis ATCC 23365] Length = 775 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVIFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753 Score = 97.8 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|261758095|ref|ZP_06001804.1| vacuolar H+-transporting two-sector ATPase [Brucella sp. F5/99] gi|261738079|gb|EEY26075.1| vacuolar H+-transporting two-sector ATPase [Brucella sp. F5/99] Length = 758 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 30 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 85 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 144 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 324 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736 Score = 97.5 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 5 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 65 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 123 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238 Query: 243 VE 244 + Sbjct: 239 FD 240 >gi|226355938|ref|YP_002785678.1| bifunctional preprotein translocase subunit SecD/SecF [Deinococcus deserti VCD115] gi|226317928|gb|ACO45924.1| putative Protein-export membrane protein secDF [Deinococcus deserti VCD115] Length = 768 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 204/686 (29%), Positives = 360/686 (52%), Gaps = 17/686 (2%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGT 208 +++ +I RI+ +G++E T+ G R+++++PG + R+++ Sbjct: 85 EGGPATKEELDRVKTVIENRINALGVAEPTVTVAGGKRVVVEIPGATPAVQQQAREIIQR 144 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 TA++ F V N + + G V+ +G + A A DP+T + Sbjct: 145 TARLEFRIVQDNAQPDPELAQKNPRSN--GYSLDQLGPVQATGEIIASAQAATDPQTGRW 202 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 VV + + GA+ F + T N+ K +AVVLD ++ + I Q QISGNF E A Sbjct: 203 VVSFTNTDKGAQTFGDFTGKNVNKLMAVVLDDQIQSVATIQQ-RLFRDVQISGNFDAEEA 261 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWG 387 LA +L++G+LPIK+ ER +G LG+D+I G A + G+ L+ + + Y +G Sbjct: 262 SQLALVLKSGALPIKVKTEAERAIGPTLGADAIRSGAIASLVGIALVFGMLFLYYGFWFG 321 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 LV + + ++ L +L GATLTLP IAG+VL IG AVD N++ ERI+EE ++ + Sbjct: 322 LVGALGLLFSAVIILGMLGGFGATLTLPGIAGLVLTIGAAVDGNVISFERIKEELQRGKG 381 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 + S+ G+ + + I D N L++ + L+ + G V+GFA+T+ + ++ S F+ + Sbjct: 382 IKNSIGAGYEHSTAAILDVNAAHLLSAMALYNYSTGPVKGFAVTLIIGVIASTFSNLVFA 441 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 + M ++ + + S + AI F++A S+L ++ +L Sbjct: 442 KWFMEWLAQRRPNMSAPMR--------IKQTAIDFIKAAPLVTTASVLIALAGAGILAVK 493 Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 GLNYG+DF G + V A V +R+ + + IS QN +++ + Sbjct: 494 GLNYGVDFTSGTTMTVRAPAAVTTEQIRTAVTGAGVSKISPQNATIQRDVVPGQPGTQYT 553 Query: 628 SVAQTRVLEMVKKKITEIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + I + + +TE VGP + REL K I V++ +L+Y+ Sbjct: 554 VKVPELNNTELTTISAAIGQVGNAEVLSTETVGPAVGRELTDKTIAAVLLGLGLILVYVG 613 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 RF + LG+I + D+ LG F+L G+EF + +VAA+LTLIGYS+ND ++V DR+R Sbjct: 614 FRFDFVMGLGSILAAVHDVAIALGLFSLLGLEFTIASVAALLTLIGYSLNDSIIVSDRIR 673 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 +N++ S+R +++ SIN+TL R++ TS++ + ++ + ++GG V+ F++ + GI Sbjct: 674 ENLREM-RGKSYRQIVNTSINQTLSRTIMTSISTMLPLVSLLIFGGPVLRDFSLILLIGI 732 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831 +V SSI+I AP+++F+ +W+ + Sbjct: 733 LVGTYSSIYIVAPLVVFLEEWKVRRK 758 Score = 71.3 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 19/227 (8%), Positives = 62/227 (27%), Gaps = 7/227 (3%) Query: 24 PNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83 P P L + ++LGLDL+GG + L + L + + + Sbjct: 50 PWQHPDQPLSLWNDKF--QFMTLGLDLKGGLRIELAPEGGPATKEELDRVKTVIENRINA 107 Query: 84 EGIGVFSMRQ-IQNKITLSFADSRFK--ENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140 G+ ++ ++ + + + + + + + + + + + Sbjct: 108 LGVAEPTVTVAGGKRVVVEIPGATPAVQQQAREIIQRTARLEFRIVQDNAQPDPELAQKN 167 Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200 + + + E Q G + ++ + Sbjct: 168 PRSN--GYSLDQLGPVQATGEIIASAQAATDPQTGRWVVSFTNTDKGAQTFGDFTGKNVN 225 Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247 +L ++ S + + + G ++ +++ Sbjct: 226 KLMAVVLDDQIQSVATIQQRLFRDVQISGNFDAEEASQLALVLKSGA 272 >gi|124002617|ref|ZP_01687469.1| SecDF [Microscilla marina ATCC 23134] gi|123991845|gb|EAY31232.1| SecDF [Microscilla marina ATCC 23134] Length = 993 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 221/841 (26%), Positives = 387/841 (46%), Gaps = 80/841 (9%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVN 123 V+ + + LR + K G+ ++++ +I + E + ++ + Sbjct: 151 VDEGIDRAFEILRRRIDKFGVANPNIQKLPGSGRIMIELPGVDNPERVRKLISGVAKLEF 210 Query: 124 SKLNV-----------------------------DPKKNLLVTTTEKEISIVLSQNNIDQ 154 +L + + T + + +++++ + Q Sbjct: 211 WELYELNEIALSFSQLNQYMTKLEKAAQKTTGDSTKTETKVDTAKKTDDNLLVAGDTTAQ 270 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM-- 212 E S+ + D + ++ + + + +Q+ A++ Sbjct: 271 ETDST-ENSLVAGGTKTDSSKTDSANTKKDTAKKADTAKKKDVKKDTTQQIGSKFARLFK 329 Query: 213 -----SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV--------------------EDKV 247 V ++ R GN K Sbjct: 330 NNGRNYAALVKDTAEINSYLRRPEVRRMFKGNALFFWDVKPDANGLLSLHIAKNTRGGKA 389 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307 + G + A FD + +P V + +++G + ++TR N+G+ +A+VLDG V +AP Sbjct: 390 PLEGDVVVDARQEFDQNS-QPEVSMRMNQLGTNEWKKLTRANVGRRVAIVLDGNVYSAPT 448 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 + IPSG + ISG+F+IE A LA +L+AG LP + IVEE VG LG SI +G + Sbjct: 449 VQNEIPSGNSSISGSFSIEEAKDLANILKAGKLPAPVRIVEEAIVGPSLGQKSINQGLQS 508 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427 ++ GL L+V+FMI+ Y G +A+ ++ N+ + +L+ GA LTLP IAGIVL IG++ Sbjct: 509 MLVGLGLVVVFMILYYKLGGAIANVALLANIFFIVGILAQFGAVLTLPGIAGIVLTIGMS 568 Query: 428 VDSNILVNERIREENRKNQSVF--CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 VD+N+L+ ERIREE R+ Q+V ++ +G+ +AYS+I D+N+T + +L+ FG G V Sbjct: 569 VDANVLIYERIREELRREQAVKLPMAIKLGYEKAYSSIIDANVTTFLIGAILYSFGSGGV 628 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545 +GFA+T+ + I S+F+AI I R ++ I ++I + IQF++ Sbjct: 629 KGFAVTLMIGIACSLFSAIFITRLIIEAI-SRGGKRNIGFSSFIPT---MGKANIQFIKL 684 Query: 546 RFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 R S F C I + +G N G+DFKGG V + V + R L G Sbjct: 685 RKKAYMGSAAFITCGIIAMVINGGLNLGVDFKGGRSYVVKFEKSVAATDARQALTDSFKG 744 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK----KKITEIVPLSTIQNTEIVGPK 660 + + F V Y D + K +++++ VG Sbjct: 745 GLEVKTFGASNQIKVTTSYLIDDESQEADKKVKAMVLNGLKKFNDGKAPSVESSSKVGST 804 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL-----F 714 I+ ++ V+ S + + IYI +RF+ W + GAI L D+ L F++ F Sbjct: 805 IADDIRNTAQTAVLFSLVVIFIYIVVRFRRWQYGAGAIAALFHDVLFVLSAFSIAHLLGF 864 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK---LYTTSISFRDLIDKSINETLGR 771 +E + +AA+LT+IGYS+ND VVV+DR+R+ + +F ++++ +IN TL R Sbjct: 865 TLEIDQVFIAAILTVIGYSINDTVVVFDRIREEDEDNTKGHRGQAFSEVLNNAINNTLSR 924 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +V TS + VL + + GG V+ F+ + G++V SS+FIA+P++L Y+ + K Sbjct: 925 TVMTSTTTLVVVLTLFLAGGEVLRGFSFALLIGVLVGTYSSVFIASPVVLDFYNMQQKKD 984 Query: 832 R 832 + Sbjct: 985 K 985 Score = 63.9 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF-LKKEGIGVFSMRQIQNKIT 99 + +SLGLDL+GG H+V+EV + + + + L++ + ++ K Sbjct: 49 QKELSLGLDLQGGMHVVVEVSPIEIIKALSGSSASVKLNRSLQEAQKAQANSQE---KFI 105 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 F + K DK+ + + T + + I +D+ Sbjct: 106 FLFQKAFDKLYPNDKLADIFA-------SSANREKIRTNSTNDEVIAFIGKEVDEG---- 154 Query: 160 IEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218 I+++ EI+R+RID+ G++ IQ+L S RI+I+LPG +P R+R+L+ AK+ F ++ Sbjct: 155 IDRAFEILRRRIDKFGVANPNIQKLPGSGRIMIELPGVDNPERVRKLISGVAKLEFWELY 214 Query: 219 PNNSKK 224 N Sbjct: 215 ELNEIA 220 >gi|306843790|ref|ZP_07476388.1| protein-export membrane protein SecD [Brucella sp. BO1] gi|306275868|gb|EFM57584.1| protein-export membrane protein SecD [Brucella sp. BO1] Length = 758 Score = 327 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 30 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 85 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 144 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALAINIIILTAVLSLI 324 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736 Score = 97.5 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 5 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 65 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 123 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238 Query: 243 VE 244 + Sbjct: 239 FD 240 >gi|254706899|ref|ZP_05168727.1| SecD/SecF family protein-export membrane protein [Brucella pinnipedialis M163/99/10] Length = 775 Score = 327 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 397/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ L M++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLVMVLSYGILGVIALVALVVNIIILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753 Score = 97.8 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|294852246|ref|ZP_06792919.1| SecD/SecF family protein-export membrane protein [Brucella sp. NVSL 07-0026] gi|294820835|gb|EFG37834.1| SecD/SecF family protein-export membrane protein [Brucella sp. NVSL 07-0026] Length = 775 Score = 327 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 462 K---LVPTVTHISFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSLRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753 Score = 97.8 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|297621893|ref|YP_003710030.1| putative bifunctional preprotein translocase subunit SecD/SecF [Waddlia chondrophila WSU 86-1044] gi|297377194|gb|ADI39024.1| putative bifunctional preprotein translocase subunit SecD/SecF [Waddlia chondrophila WSU 86-1044] Length = 1525 Score = 327 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 201/852 (23%), Positives = 358/852 (42%), Gaps = 69/852 (8%) Query: 42 NRISLGLDLRGG--SHLVLEVDEDDFV--NGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 + GLDL GG + L V L+ +EL + + K G+ ++R N Sbjct: 672 KILKWGLDLSGGKTVRIGLRDQSGRIVTNPEDLKQAVNELYTRINKMGVAERTIRIENNN 731 Query: 98 ITLSFADSR-----FKENIAD----KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148 I L F S+ + V NS L + + L E ++ Sbjct: 732 IILDFPGSQAFSASELVKASAMYFHIVNEKFSQFNSSLREEVNQFLQNVWNEAVVTNRKD 791 Query: 149 QNNIDQVISHAIE---QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP-SRLRQ 204 +I+++ + Q+ E+ R + R+ + R ++ D S + Sbjct: 792 AQSINEIAWEQMGGNLQTGEVGEPRSEVARTLYENGLRIANPRTTVKSAAFDDTHSSIAM 851 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 L G + P ++ Y + +S A+ Sbjct: 852 LRGDDYSEWNGQTHPLLVVFSNFALEGSSLENVNVGYDPSEGNILSFGVKRSYDASHPRA 911 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI-----PSGKAQI 319 P D V+ + + A I Sbjct: 912 GSSPRDDFYSWTSQFSEDKIAGTAKEAYSQGRGWRMAVILNDHVITSPNLRAALRDAATI 971 Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 SG F+ LAA L+AGSL I+ E+N+ A+LG + +G A GLVL+ M Sbjct: 972 SGRFSQREINQLAADLKAGSLSFTPKILSEQNISAELGKEERTRGILAACIGLVLVGATM 1031 Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439 I Y G+VA ++ N+++ +L LGA LTLP IAGIVL IG+AVD+N+LV ER+R Sbjct: 1032 IGYYRFAGVVATCAVLFNLLIMWGVLQNLGAALTLPGIAGIVLTIGMAVDANVLVFERVR 1091 Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499 EE + + ++ G+ +A+S I DSNIT +IA ++L F G ++GFA+T+ + ++ S Sbjct: 1092 EEFAVSGRIASAIQAGYRKAFSAIVDSNITTIIAALILIQFDSGPIKGFAVTLIIGLVSS 1151 Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559 MFTA+ + R ++ K K +++ + I F+ + IS + Sbjct: 1152 MFTALFMTRYFFAGWVKNPKNKKLNMAN------LFGGTNIDFLSYTKSAMIISAAIILV 1205 Query: 560 SICLLFTHGLNY-GIDFKGGIQLGVLANR----------------------PVDLSVVRS 596 L +T G+DF GG L V + +R Sbjct: 1206 GGYLFWTQKNTMFGMDFTGGYSLNVEMEDTLGEEEGIYKEKASAAMLANGAHANSFQIRQ 1265 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ------------TRVLEMVKKKITE 644 Q+ + + + + D + LE I + Sbjct: 1266 LSRPNQLRIQLSLGMEEKGSPFYGMPEATQDDETTYDYEKDPRITWVVKALESEGLNIQQ 1325 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ + ++ + S + + + + I++L+YI +RF++ +A+GA+ L+ D+ Sbjct: 1326 SDLVNLDKQWSMMSGQFSETMRNNAFLALTFALISILLYITVRFEFKYAIGAVIGLVHDV 1385 Query: 705 TKTLGFFALFGI-----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 T+G +A+F + +L V A++T+IGYS+ND ++++DR+R+++K+ +SF + Sbjct: 1386 LITMGIYAIFHAIGFPVQIDLVVVGAIMTIIGYSLNDTIIIFDRIREDLKILRK-LSFAE 1444 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +I+ ++N TL R++ TS + +L + + GG I F++ M G+++ SS+FIA P+ Sbjct: 1445 VINHALNVTLSRTIMTSGTTLVVLLSLVLLGGHSIFDFSLVMTIGVIIGTLSSLFIAGPV 1504 Query: 820 LLFIYDWRAKNA 831 +LF ++ K Sbjct: 1505 MLFFHNREEKIK 1516 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 76/180 (42%), Gaps = 8/180 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + + + ++ +E +GI+ I + + + +++ + A ++ ++ G Sbjct: 1000 SEQNISAELGKEERTRGILAACIGLVLVGATMIGYYRF-AGVVATCAVLFNLLIMWGVLQ 1058 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G L +A ++ IG +V+ V+V++R+R+ + I + Sbjct: 1059 NLGAALTLPGIAGIVLTIGMAVDANVLVFERVREEFAVSGR---IASAIQAGYRKAFSAI 1115 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 V +++ I+ L + + I FA+ + G+V SS+F A + + + KN + Sbjct: 1116 VDSNITTIIAALILIQFDSGPIKGFAVTLIIGLV----SSMFTALFMTRYFFAGWVKNPK 1171 >gi|34397702|gb|AAQ66763.1| protein-export membrane protein SecD/protein-export membrane protein SecF [Porphyromonas gingivalis W83] Length = 944 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 213/826 (25%), Positives = 374/826 (45%), Gaps = 57/826 (6%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113 D + + LR+ + G+ ++++ Q +I + + E + Sbjct: 119 ADVVRLLKEKYNSAVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRT 178 Query: 114 KVTLFLQGVNSKL-----------------------NVDPKKNLLVTTTEKEISIVLSQN 150 + + N D TT+ + S Sbjct: 179 LLQRSANLQFWRTYKFEEVSGDLIAANDRLSELAMNNTDATPETEPATTDSVAATADSAA 238 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGI----SESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 S + Q R D + +G R + + L Sbjct: 239 VQAVADSATVAQKEAKDATRKDALFSLLTPVNRGGAVVGVARRANMAQISEMLQQAHDLK 298 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT- 265 T + F ++ G + A ++ Sbjct: 299 VTREDVLFLWGAKAIEDPETKKETDLYELYAIRT-NRTGDPDLGGDVVTSAKSDIQNDFG 357 Query: 266 -HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 +P+V ++ +E GAR++ +T+DN+G+ +A+VLDG V +AP +N I G++QISG+FT Sbjct: 358 RSEPIVSMTMNEEGARKWARITKDNVGRAIAIVLDGVVYSAPNVNDEITGGRSQISGHFT 417 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 +E AG LA +L +G + ++I +E +G LG++SI G + + LV+++ +M + YG Sbjct: 418 VEEAGDLANVLNSGKMDATVSIEQENVIGPTLGAESIKAGFLSFLLALVILMCYMCLAYG 477 Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 GL+A+ ++ +N TL +L+ A LTL IAG+VL +G+AVD+N+L+ ERI+EE R Sbjct: 478 FLPGLIANGALIVNSFFTLGVLASFHAVLTLSGIAGLVLTLGMAVDANVLIFERIKEELR 537 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 ++ ++ G+ A+S IFDSN+T +I ++LF +G G +RGFA T+ + ++ S TA Sbjct: 538 AGKTPIRAVTDGYGNAFSAIFDSNVTTIITGIILFLYGTGPIRGFATTLIIGLIASFITA 597 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + R + + + ++ I L+ + + R G I ++ + + Sbjct: 598 VFLTRIVFEKLAKKGRLDKITFTTSITRNLL-VNPSYNILGKRKTGFIIPVIIIVLGLIA 656 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 FT GLN GI+F GG V ++PV VRS L S + + E + Sbjct: 657 SFTIGLNRGIEFSGGRNYVVKFDQPVSSEAVRSALSSPLQEKVLVTSIGTEGTEVRISTN 716 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-----------NTEIVGPKISRELIRKGIVG 672 ++ E+ K + T Q +++ V P +S ++ R I Sbjct: 717 YKIQEESEETEAEITDKLYQSLKGFYTQQPTADQFLDNIISSQKVSPSMSSDITRGAIWA 776 Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725 V++S I M IYI IRF+ F+ G ++ + +AL F +E + +AA Sbjct: 777 VLLSMIFMAIYILIRFRDISFSAGVFVSVAATTFCIIALYALLWKILPFTMEIDQNFIAA 836 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 +L +IGYS+ND VVV+DR+R+ MKLY + +I+ ++N TLGR++ TS+ FI +L Sbjct: 837 ILAIIGYSLNDTVVVFDRIRETMKLYPNRDRY-QVINDALNSTLGRTLNTSLTTFIVMLV 895 Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++GG+ + SF + GIV+ S++F+A P+ I + A Sbjct: 896 IFIFGGATMRSFTFSILLGIVIGTYSTLFVATPLAYEIQKRKLNKA 941 Score = 56.6 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 16/191 (8%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 +I LGLDL+GG +++L+++ D + D K + + I Sbjct: 27 AQAQQIGLGLDLKGGMNVILKLNASDLLRNLSNKSLDP---NFNKALENAAKSTEQSDFI 83 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 + + R + + + D + + +T+ ++ +L + + Sbjct: 84 DIFVKEYRKLDPNG-------RLAVIFGSGDLRDQITAKSTDADVVRLLKEKY-----NS 131 Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 A+E S ++R RID G+ +QR G RIL++LPG +DP R+R LL +A + F + Sbjct: 132 AVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRTLLQRSANLQFWRT 191 Query: 218 LPNNSKKGFMF 228 G + Sbjct: 192 YKFEEVSGDLI 202 >gi|330996513|ref|ZP_08320395.1| export membrane protein SecD [Paraprevotella xylaniphila YIT 11841] gi|329573069|gb|EGG54688.1| export membrane protein SecD [Paraprevotella xylaniphila YIT 11841] Length = 1015 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 208/841 (24%), Positives = 375/841 (44%), Gaps = 78/841 (9%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122 V + + LR+ + + G+ +++ +I + + E + + Sbjct: 173 VQSAIDNSYNVLRTRIDRFGVVQPNIQTLEGQMGRIMVEMPGVKEPERVRKLLQGSANLE 232 Query: 123 NSKLNVDPK----------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166 + + + T K + +++ + + Sbjct: 233 FWETYNTEEIIPFLATLDTRLAAEHAAIAENDTVKADTTAMAELTPAEKVDATDSTKKAP 292 Query: 167 IRQRIDQIGISESTIQ-----------------------RLGSHRILIQLPGEQDPSRLR 203 ++ + + T G ++ +D + + Sbjct: 293 VKDLAAALKGNSGTPAEKAGAAVDEQAMKNHPLASVLQLAQGPMGCVVGYASWRDTATVN 352 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATA 259 + + + G + D + + G + Sbjct: 353 RYITSAVAKEVLPSDLKLYWGVKPVGSGNMGDIFELYAIKITERNGRAPLEGDVVTE-AK 411 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319 + + +P V ++ + GARR+ +T+ N+ + +A+VLDG V +AP + I G + I Sbjct: 412 DDYEQNGRPCVSMTMNSDGARRWAALTKKNVKRAIAIVLDGYVYSAPTVQNEITGGVSSI 471 Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 +G+FT+E LA +L G +P +IV E+ VG LG +SI +G + V +L++++M Sbjct: 472 TGHFTLEDTRDLANVLNTGKMPAPAHIVSEQFVGPTLGQESINQGITSFVIAFILLMIYM 531 Query: 380 IVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438 +YG G+VA+ ++ LN TL +L+ A LT+ IAG+VL +G+AVD+N+L+ ER Sbjct: 532 CGMYGLVPGMVANGALILNFFFTLGVLTSFQAALTMSGIAGMVLSLGMAVDANVLIYERT 591 Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498 +EE R ++V +L G+S A+S IFDSN+T++I ++L+ FG G +RGFA T+ + IL+ Sbjct: 592 KEELRAGKAVKQALSDGYSNAFSAIFDSNLTSIITGIILYNFGTGPIRGFATTLIIGILV 651 Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558 S FTA+ + R + + K ++ + D +FM A + + + Sbjct: 652 SFFTAVFLTRIVYEHFLNKDKWMNLTFTTTLSRKFLRD-THYKFMSAYKKSFSVFGVLLL 710 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I LF GL+ GIDF GG V+ + V+ VR+ L++ G + Sbjct: 711 IGIASLFVRGLSKGIDFTGGRNFVVVFEKQVEPETVRTLLQNKFGDANIQVIALGTDHQT 770 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKI---------------------TEIVPLSTIQNTEIV 657 VR+ T V ++ + + +I ++E V Sbjct: 771 VRISTNYRIDEEGTDVDSEIESTLFETLKGGGLLSSDLDLQTFINRDERAGGSIISSEKV 830 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL--- 713 GP ++ ++ IV V+++ IA+ +YI +RF+ F++GA+ L +D +G +++ Sbjct: 831 GPSVAEDITYGAIVSVVLALIAIFLYILLRFRNVAFSVGAVVALTVDTLLIIGAYSICWG 890 Query: 714 ---FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F +E + T + AVLT IGYS+NDKVVV+DR+R+ + LY + L + S+N TL Sbjct: 891 WMPFSLEIDQTFIGAVLTAIGYSINDKVVVFDRIREFLHLYPNR-DRQRLFNDSLNTTLT 949 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ TS+ + +L + GG I SFA M G+V+ SSIF+AAP+ R K Sbjct: 950 RTINTSLTTLVVLLCIFFLGGDSIRSFAFAMILGVVIGTCSSIFMAAPVAFLTMGQRIKE 1009 Query: 831 A 831 Sbjct: 1010 N 1010 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 92/251 (36%), Gaps = 45/251 (17%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSA 38 M+N ++ + ++ + + +F+ + P Sbjct: 1 MQNKGFVKVFALLLTLVCVFYLSFSFVTTYQMNKVDEITKTQGEEVGAHYLDSVMNNPVW 60 Query: 39 M--------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90 + + ISLGLDL+GG +++LEV + V D + + Sbjct: 61 LGAYSLKDCREMEISLGLDLKGGMNVILEVSVPEVVKALADHKEDPAFNK-AVAKAAEGA 119 Query: 91 MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 + ITL + + K + +++ E+ VL Sbjct: 120 KNSQSDFITLFVKE-------YKTLAPDGNLAELFATQQLKGKVTTKSSDSEVEKVLRAE 172 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208 + AI+ S ++R RID+ G+ + IQ RI++++PG ++P R+R+LL Sbjct: 173 -----VQSAIDNSYNVLRTRIDRFGVVQPNIQTLEGQMGRIMVEMPGVKEPERVRKLLQG 227 Query: 209 TAKMSFHKVLP 219 +A + F + Sbjct: 228 SANLEFWETYN 238 >gi|258648881|ref|ZP_05736350.1| protein-export membrane protein SecD/SecF [Prevotella tannerae ATCC 51259] gi|260850904|gb|EEX70773.1| protein-export membrane protein SecD/SecF [Prevotella tannerae ATCC 51259] Length = 958 Score = 326 bits (835), Expect = 9e-87, Method: Composition-based stats. Identities = 205/811 (25%), Positives = 362/811 (44%), Gaps = 63/811 (7%) Query: 60 VDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQ-----IQNKITLSFADSRFKEN 110 + + + +RS + + G+ +++ +I + + E Sbjct: 160 AQVQKALEEEVDAAVANSNEVVRSRIDRFGVAQPNIQILRGKGQIGQIMVEMPGIKEPER 219 Query: 111 IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170 + + + +++ + +QS + + Q Sbjct: 220 VRKLLQGSANLEFWETY--------TLDKINAALQSINEIGTASDSTQQQKQSGKPLFQM 271 Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230 + Q + + S + + V P + ++ + Sbjct: 272 LSQQNTNPQGCIVGYAAPKDTAAIDNIIYSEAAKSKLPADLVLHWSVKPEMGQAFALYAL 331 Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 R + + G + A +FD H+P+V ++ G+R + +T+ N+ Sbjct: 332 R----------SNGGQPALQGDVIADAKDDFDQY-HRPIVSMTMTNDGSREWANITKKNL 380 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 +P+A+VLDG V +APVI I G +QISG+FT + LA +L++G +P NIV+E Sbjct: 381 HQPVAIVLDGYVYSAPVIQNEINGGTSQISGHFTTDDTRDLANVLKSGKMPAPTNIVQEE 440 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLG 409 VG LGS SI G + + +L+++FM YG G+VA+ ++ LN T +L Sbjct: 441 TVGPSLGSASIQAGLYSCIVAFILLMIFMCCYYGIIPGMVANIALVLNFFFTFGVLVSFQ 500 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 A LT+ IAG+VL +G+AVD+N+L+ ER +EE R +++ +L G+ A+S IFDSN+T Sbjct: 501 AALTMSGIAGLVLSLGMAVDANVLIYERTKEELRNGKNIKSALAAGYGNAFSAIFDSNLT 560 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529 ++I ++L+ FG G +RGFA+T+G+ I S FTA+ I R + + +++ + + Sbjct: 561 SIITAIILYNFGTGPIRGFALTLGIGICASFFTAVWISRMIYERQMNHERWLGLTFSTPL 620 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + + M+ + + L + I L T GL+ GIDF GG + Sbjct: 621 TRNFL-TNAHFRLMKNAPKAMIVFGLIVLVCIGSLATRGLSKGIDFTGGRNFVIEFEDRA 679 Query: 590 --------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL------ 635 + V + ++ + Y A + Sbjct: 680 ITPEKVDAAVERVIKAKDPNATISAIEVVTAQKRAVRLTTNYMIDSDAADADEVVEKTVY 739 Query: 636 -----------EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 + K E +I + + VGP ++ ++ + I+ VI+S IA+ +YI Sbjct: 740 EALKQGKLITADYKTFKDRENRTGGSIVSAQKVGPAVAADMAKGAIISVILSLIAIFVYI 799 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDK 737 RF+ F++G++ L +D +G +++ F +E + T + AVLT IGYS+NDK Sbjct: 800 LARFRNVAFSIGSVLALTVDTLIIVGMYSICWGWMPFSLEVDQTFIGAVLTAIGYSINDK 859 Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 VVV+DR+R+N+ LY + L + S+NETL R++ TS + +L + GG I SF Sbjct: 860 VVVFDRIRENLGLYPKRET-ERLFNDSLNETLARTIMTSATTLLVLLCIFFLGGDSIRSF 918 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 A M G++ SSIF+AAPI + Sbjct: 919 AFAMILGVIFGTLSSIFLAAPIAFRTLGKKR 949 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 63/406 (15%), Positives = 135/406 (33%), Gaps = 50/406 (12%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ---------------------SMLDRFPSAM 39 M+N ++ + ++ I L +F+ + + Sbjct: 1 MQNKGFVKAIAILLTLICLFYFSFSFVTNHYERKAEAMGPVAGKAYLDSMMNEKVYLNWK 60 Query: 40 PKN-----RISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRS-FLKKEGIGVFSMR 92 +I LGLDL+GG +++LEV D V + + G + Sbjct: 61 TLKECQSLQIGLGLDLKGGMNVILEVSVPDVVKNLAGDNAKAPAFQKAVDQAREGYK--K 118 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 + + L D LF + +KN+ +++ + Q + Sbjct: 119 GDGDFVELFVKDYAEANGAGKLGALFAARLK-------EKNITFNSSDAQ-----VQKAL 166 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR----LGSHRILIQLPGEQDPSRLRQLLGT 208 ++ + A+ S E++R RID+ G+++ IQ +I++++PG ++P R+R+LL Sbjct: 167 EEEVDAAVANSNEVVRSRIDRFGVAQPNIQILRGKGQIGQIMVEMPGIKEPERVRKLLQG 226 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 +A + F + + + + + G + + SG L + + Sbjct: 227 SANLEFWETYTLDKINAALQSI----NEIGTASDSTQQQKQSGKPLFQMLSQQNTNPQGC 282 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 +V + + A + + L L P + QA + +G Sbjct: 283 IVGYAAPKDTAAIDNIIYSEAAKSKLPADLVLHWSVKPEMGQAFALYALRSNGGQPALQG 342 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 ++A + + +I K +VL Sbjct: 343 DVIADAKDDFDQYHRPIVSMTMTNDGSREWANITKKNLHQPVAIVL 388 >gi|326538630|gb|ADZ86845.1| protein-export membrane protein SecD [Brucella melitensis M5-90] Length = 761 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 33 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 87 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 88 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 147 Query: 232 ---FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 148 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 207 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 208 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 267 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 268 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 327 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 328 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 387 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 388 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 447 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 448 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 504 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 505 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 561 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 562 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 621 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 622 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 680 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 681 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 739 Score = 96.3 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 8 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 67 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 68 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 125 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 126 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 181 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 182 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 241 Query: 243 VE 244 + Sbjct: 242 FD 243 >gi|291296314|ref|YP_003507712.1| protein-export membrane protein SecD [Meiothermus ruber DSM 1279] gi|290471273|gb|ADD28692.1| protein-export membrane protein SecD [Meiothermus ruber DSM 1279] Length = 759 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 215/699 (30%), Positives = 358/699 (51%), Gaps = 30/699 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLRQLLGTT 209 V ++ + +I R++ IG++E +Q G+ RI+++LP + R L+G T Sbjct: 64 DPSVAKTELDVARTVIENRVNAIGVAEPLVQVQGNDRIIVELPGLKQDQQERALGLIGQT 123 Query: 210 AKMSFHKVLPNNSKK--------------GFMFGVRFLRDSDGNQYLVE--DKVEISGIH 253 AK+ F V + + + N Y +E ++G Sbjct: 124 AKLEFRIVNQGATGTTVAQINEQLRSSGLSGAALAARRAELEKNLYKLEDLGPPLLTGSD 183 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313 L A A+FD +P VD+ F GA++F EVTR N+G+ LAVVLDG+V TAP I QAI Sbjct: 184 LRTANASFDQFG-RPQVDMEFTPEGAKKFEEVTRANVGRQLAVVLDGKVYTAPSIRQAIA 242 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 G+A I G ++ A +A +LR+GSLP+KL + E R +G LG D+I G A + G V Sbjct: 243 GGRAVIEGLSGVQEASDIALVLRSGSLPVKLEVAETRAIGPTLGQDAINAGIQAGIIGTV 302 Query: 374 LIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432 L+ + + Y GLVA + IL LA +SLLGATLTLP IAG++L +G AVD N+ Sbjct: 303 LLFILIFAYYGFWMGLVAALGLIYTAILLLASISLLGATLTLPGIAGLILTLGAAVDGNV 362 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 L ERI+EE + + ++ GFS + TI D N+ L+A L+ + G VRGFA+ + Sbjct: 363 LSFERIKEELKMGKKFRQAIPGGFSHSIITILDVNMCHLLAAAALYQYSTGPVRGFAVML 422 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552 L ++ S+F+ + R ++ I +++ I F+ + Sbjct: 423 ALGVVTSVFSNLVFSRWLLELIGDRCEVR---------PPYWLWGTKIDFLGISRYVTAA 473 Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 S+ ++ + ++F G N+GIDF GG + +RS L++ I ++ Sbjct: 474 SLTLAVIAAGIVFVKGFNFGIDFTGGTAFTIRVPEGTRAEQIRSFLDNAGIAELRGAESV 533 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 V + + +K + +TI +E VGP I EL R I Sbjct: 534 ITSLSSVNGNEFSVRVRQISEEQRIELEKKFQESLQATILQSETVGPAIGSELRRNTIFA 593 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 V++ +LIY+ RF W F + ++ + D+ G ++L G+EF++ VA +LT++G+ Sbjct: 594 VLVGLALILIYVAFRFDWVFGVASVIAVGHDVAIVAGMYSLLGLEFSIPTVAVLLTIVGF 653 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 S+ND V++ DR+R+N+K+ S+ ++++ SIN+TL R++ TS++ + +L + GG Sbjct: 654 SINDSVIISDRIRENLKIM-RGRSYYEIVNASINQTLSRTLMTSLSTMLPILALLFLGGP 712 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 V+ F++ + G VV SSI++ + ++++ + Sbjct: 713 VLRDFSLAIFVGFVVGTYSSIYVVSALVVWYKTLEQRRK 751 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 9/148 (6%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M N W +L + ++ + ++ + P I LGLDL+GG + L+V Sbjct: 1 MTNRTWKAVLLIGLLLAAIVGLFRPWEARNP--QKPLLPADGLIRLGLDLQGGLRITLKV 58 Query: 61 DEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFAD--SRFKENIAD 113 E + L + + + + G+ ++ N +I + +E Sbjct: 59 AEPNPDPSVAKTELDVARTVIENRVNAIGVAEPLVQVQGNDRIIVELPGLKQDQQERALG 118 Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEK 141 + + +N + E+ Sbjct: 119 LIGQTAKLEFRIVNQGATGTTVAQINEQ 146 >gi|260563917|ref|ZP_05834403.1| vacuolar H+-transporting two-sector ATPase [Brucella melitensis bv. 1 str. 16M] gi|260153933|gb|EEW89025.1| vacuolar H+-transporting two-sector ATPase [Brucella melitensis bv. 1 str. 16M] Length = 758 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 30 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 85 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 144 Query: 232 ---FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 324 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736 Score = 95.5 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNFL + L P +PK ++SLGLDL GGS L+L+V Sbjct: 5 SRWKSALIWLAVLVSLIIASPNFLSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 65 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 123 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238 Query: 243 VE 244 + Sbjct: 239 FD 240 >gi|161579529|ref|NP_905864.2| bifunctional preprotein translocase subunit SecD/SecF [Porphyromonas gingivalis W83] Length = 981 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 213/826 (25%), Positives = 374/826 (45%), Gaps = 57/826 (6%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113 D + + LR+ + G+ ++++ Q +I + + E + Sbjct: 156 ADVVRLLKEKYNSAVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRT 215 Query: 114 KVTLFLQGVNSKL-----------------------NVDPKKNLLVTTTEKEISIVLSQN 150 + + N D TT+ + S Sbjct: 216 LLQRSANLQFWRTYKFEEVSGDLIAANDRLSELAMNNTDATPETEPATTDSVAATADSAA 275 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGI----SESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 S + Q R D + +G R + + L Sbjct: 276 VQAVADSATVAQKEAKDATRKDALFSLLTPVNRGGAVVGVARRANMAQISEMLQQAHDLK 335 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT- 265 T + F ++ G + A ++ Sbjct: 336 VTREDVLFLWGAKAIEDPETKKETDLYELYAIRT-NRTGDPDLGGDVVTSAKSDIQNDFG 394 Query: 266 -HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 +P+V ++ +E GAR++ +T+DN+G+ +A+VLDG V +AP +N I G++QISG+FT Sbjct: 395 RSEPIVSMTMNEEGARKWARITKDNVGRAIAIVLDGVVYSAPNVNDEITGGRSQISGHFT 454 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 +E AG LA +L +G + ++I +E +G LG++SI G + + LV+++ +M + YG Sbjct: 455 VEEAGDLANVLNSGKMDATVSIEQENVIGPTLGAESIKAGFLSFLLALVILMCYMCLAYG 514 Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 GL+A+ ++ +N TL +L+ A LTL IAG+VL +G+AVD+N+L+ ERI+EE R Sbjct: 515 FLPGLIANGALIVNSFFTLGVLASFHAVLTLSGIAGLVLTLGMAVDANVLIFERIKEELR 574 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 ++ ++ G+ A+S IFDSN+T +I ++LF +G G +RGFA T+ + ++ S TA Sbjct: 575 AGKTPIRAVTDGYGNAFSAIFDSNVTTIITGIILFLYGTGPIRGFATTLIIGLIASFITA 634 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + R + + + ++ I L+ + + R G I ++ + + Sbjct: 635 VFLTRIVFEKLAKKGRLDKITFTTSITRNLL-VNPSYNILGKRKTGFIIPVIIIVLGLIA 693 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 FT GLN GI+F GG V ++PV VRS L S + + E + Sbjct: 694 SFTIGLNRGIEFSGGRNYVVKFDQPVSSEAVRSALSSPLQEKVLVTSIGTEGTEVRISTN 753 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-----------NTEIVGPKISRELIRKGIVG 672 ++ E+ K + T Q +++ V P +S ++ R I Sbjct: 754 YKIQEESEETEAEITDKLYQSLKGFYTQQPTADQFLDNIISSQKVSPSMSSDITRGAIWA 813 Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725 V++S I M IYI IRF+ F+ G ++ + +AL F +E + +AA Sbjct: 814 VLLSMIFMAIYILIRFRDISFSAGVFVSVAATTFCIIALYALLWKILPFTMEIDQNFIAA 873 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 +L +IGYS+ND VVV+DR+R+ MKLY + +I+ ++N TLGR++ TS+ FI +L Sbjct: 874 ILAIIGYSLNDTVVVFDRIRETMKLYPNRDRY-QVINDALNSTLGRTLNTSLTTFIVMLV 932 Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++GG+ + SF + GIV+ S++F+A P+ I + A Sbjct: 933 IFIFGGATMRSFTFSILLGIVIGTYSTLFVATPLAYEIQKRKLNKA 978 Score = 57.8 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 97/254 (38%), Gaps = 41/254 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA---------------------- 38 M+N +++++ S + I +F+ + + Sbjct: 1 MQNKGFVIVITSALAIICAFYLSFSFVTNRYEKKAKAMGDVAGMAYLDSMSNEKVWFGYT 60 Query: 39 ---MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95 +I LGLDL+GG +++L+++ D + D K + Sbjct: 61 LKEAQAQQIGLGLDLKGGMNVILKLNASDLLRNLSNKSLDP---NFNKALENAAKSTEQS 117 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + I + + R + + + D + + +T+ ++ +L + Sbjct: 118 DFIDIFVKEYRKLDPNG-------RLAVIFGSGDLRDQITAKSTDADVVRLLKEKY---- 166 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 + A+E S ++R RID G+ +QR G RIL++LPG +DP R+R LL +A + F Sbjct: 167 -NSAVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRTLLQRSANLQF 225 Query: 215 HKVLPNNSKKGFMF 228 + G + Sbjct: 226 WRTYKFEEVSGDLI 239 >gi|265999497|ref|ZP_05466631.2| vacuolar H+-transporting two-sector ATPase [Brucella melitensis bv. 2 str. 63/9] gi|263094301|gb|EEZ18162.1| vacuolar H+-transporting two-sector ATPase [Brucella melitensis bv. 2 str. 63/9] gi|326408912|gb|ADZ65977.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella melitensis M28] Length = 758 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 30 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 85 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 144 Query: 232 ---FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 324 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736 Score = 96.3 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 5 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 65 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 123 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238 Query: 243 VE 244 + Sbjct: 239 FD 240 >gi|254718995|ref|ZP_05180806.1| SecD/SecF family protein-export membrane protein [Brucella sp. 83/13] gi|306840118|ref|ZP_07472904.1| protein-export membrane protein SecD [Brucella sp. NF 2653] gi|306404846|gb|EFM61139.1| protein-export membrane protein SecD [Brucella sp. NF 2653] Length = 758 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 30 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLATTA-----NIMRQRLEELG 84 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 85 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 144 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 324 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKQVPKRRL 444 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736 Score = 95.9 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + I L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 5 SRWKSALIWLAVLISLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 65 G--KTDLATTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 123 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238 Query: 243 VE 244 + Sbjct: 239 FD 240 >gi|260566552|ref|ZP_05837022.1| vacuolar H+-transporting two-sector ATPase [Brucella suis bv. 4 str. 40] gi|260156070|gb|EEW91150.1| vacuolar H+-transporting two-sector ATPase [Brucella suis bv. 4 str. 40] Length = 758 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 30 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 85 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 144 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + +++ LFM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 324 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 678 TLSRTLLTSFVIFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736 Score = 97.5 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 5 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 65 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 123 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238 Query: 243 VE 244 + Sbjct: 239 FD 240 >gi|297565899|ref|YP_003684871.1| protein-export membrane protein SecD [Meiothermus silvanus DSM 9946] gi|296850348|gb|ADH63363.1| protein-export membrane protein SecD [Meiothermus silvanus DSM 9946] Length = 740 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 213/702 (30%), Positives = 355/702 (50%), Gaps = 24/702 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE--QDPSRLR 203 ++ + ++ + +I R++ +G++E +Q G+ RI+++LPG D R Sbjct: 45 IVLEPTTPTFTRQDLDVARTVIENRVNALGVAEPLVQIQGNRRIVVELPGLSKADEDRAI 104 Query: 204 QLLGTTAKMSFHKVLPN----------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 +L+G TA + F + N K+ + + V ++G Sbjct: 105 RLIGQTAVLEFRILNENAQGLTVADINQQKRANPNLDTKSLEQRLFKQSDLGPVLLTGKD 164 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313 L A A FD +P V ++F GA++F EVTR NIG+ LAVVLDG+V TAP I AI Sbjct: 165 LANAQATFDQFG-RPQVSLTFTGEGAKKFEEVTRQNIGRRLAVVLDGKVFTAPTIRSAIS 223 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 G+A I G +E A +A +LR+GSLPI L E R +G LG D+I G A + G V Sbjct: 224 GGQAVIEGLSGLEEASEIALVLRSGSLPISLREAETRAIGPTLGQDAIRSGIYAGIVGTV 283 Query: 374 LIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432 LI + + Y GLVA + +L L ++S L ATLTLP IAG++L +G AVD N+ Sbjct: 284 LIFVLIFAYYGFWLGLVAALGLIYTSVLILGIISGLSATLTLPGIAGLILTLGAAVDGNV 343 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 L ERI+EE + + ++ GF + TI D N L+A L+ + G V+GFA+ + Sbjct: 344 LSFERIKEEIKHGKRFRQAIPGGFQHSIITILDVNACHLLAAAALYQYSTGPVKGFAVML 403 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552 + ++ S+F+ + R ++ I +++K + QFM+ + Sbjct: 404 AVGVVASVFSNLVFSRWLLDRIAERREVKPL---------YWVWGSRFQFMKWARYITTF 454 Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 S++ ++ + + G N GIDF GG V +RS L I + Sbjct: 455 SLILAVIAGSIALVKGFNLGIDFTGGTAFTVRTGDKTTTEDIRSFLSQAGIPGAAGNEAI 514 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + T + +++ + + + +E VGP + EL R I Sbjct: 515 ITAVATQQGREYTVRVRQLTEENRIQLERLFQERLSAQVLQSETVGPSVGSELRRNTIYA 574 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 V+I +++Y+ RF W F LG+I + D+ G ++LFG+EF + VAA+LT+IGY Sbjct: 575 VLIGLALIMVYVAFRFDWMFGLGSIIAVAHDVAIVAGMYSLFGLEFTIPTVAALLTIIGY 634 Query: 733 SVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791 S+ND +++ DR+R+N+K S+R++ D +IN+TL R+V T++ + V+ + GG Sbjct: 635 SLNDSIIISDRIRENLKDPQNRGKSYREIFDLAINQTLSRTVMTTLTTLLPVIALLFLGG 694 Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 SV+ F++ + GI V SSI++ + +++ +A+ ++ Sbjct: 695 SVLRDFSLAITVGIFVGTYSSIYVVSALVVAWKTRQAQRQKL 736 >gi|229495647|ref|ZP_04389376.1| putative protein-export membrane protein SecD [Porphyromonas endodontalis ATCC 35406] gi|229317417|gb|EEN83321.1| putative protein-export membrane protein SecD [Porphyromonas endodontalis ATCC 35406] Length = 989 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 194/819 (23%), Positives = 368/819 (44%), Gaps = 56/819 (6%) Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMR--QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 + + LR+ + + G+ +++ + + +I + + E + + Sbjct: 169 ESASEASINVLRTRIDRFGVVSPNIQKIEGEGRILVELPGVKEPERVRGLLQQSANLQFW 228 Query: 125 KLNV---------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 + + L+ + + + + Sbjct: 229 RTYTYADVESDLITANERLVALAGAPAEETEVVAVADSAANEATPATANASDSNAVAEQR 288 Query: 176 ISESTIQRLGSHR---------ILIQLPGEQDPSRLRQLLGTTAKMSFH----------- 215 ES ++ +R + + Sbjct: 289 ARESVEAMDKKMAEGSKLFDLLQVVNRGTVVGLARNANRAAIDSMLEVAHERGFIREDLM 348 Query: 216 -KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP--KTHKPVVDI 272 + + + + ++SG + GA + + PVV + Sbjct: 349 LLWGNDPYVDPQTKKETDIYELYAIRGNRNGDPDLSGDVVTGAKSEVSQGIASKGPVVTM 408 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 + DE GAR++ +T+DNIGK +AVVLDG V +AP +N I G+++ISG+FT+E LA Sbjct: 409 TMDEEGARKWARLTKDNIGKAIAVVLDGVVYSAPNVNSEITGGRSEISGHFTVEQTTDLA 468 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVAD 391 +L +G + + I +E VG LG +SI G + LVL++++M ++YG GL+AD Sbjct: 469 NVLNSGKMEASVMIEQENVVGPTLGEESIRSGIISFFIALVLLMVYMCLVYGLIPGLIAD 528 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ +N TL +L+ + LTL IAG+VL +G+AVD+N+L+ ERI+EE R +S+ + Sbjct: 529 GALIVNSFFTLGILASFHSVLTLSGIAGLVLTLGMAVDANVLIFERIKEELRAGKSMTRA 588 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 + G+ A+S IFDSNIT +I +LF G G ++GFA T+ + ++ S TA+ + R ++ Sbjct: 589 IADGYGNAFSAIFDSNITTIITAAILFIVGTGPIKGFATTLMIGLVASFITAVFLTRIVV 648 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571 + + KM + ++ D + R G+ + ++ I + LFT LN Sbjct: 649 EALDKKGKMSKVTYTTALSKNVLVD-PKFNILGKRKMGIAMPVILIIAGLVGLFTLKLNM 707 Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 GI+F GG + ++PV ++ VR L + + + + + D Sbjct: 708 GIEFSGGRNYVIEFDQPVQVAQVRDVLAAPFDNKLVVTSIGSQGTQVRVATNFKVDENTA 767 Query: 632 TRVLEMVKKKIT------------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 E+ + + I +++ V +S ++ RK ++ VI++ + Sbjct: 768 EVEDEINTILYENTKSLYKNAPDRDTFLSTGIVSSQKVSASMSHDIARKALIAVILALVF 827 Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGY 732 M YI +RF+ ++LGA ++ + + L F +E + +AA+L +IGY Sbjct: 828 MAAYILLRFRHLSYSLGAFASVSATTLSIIALYVLLWRIMPFTMELDQNFIAAILAIIGY 887 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 S+ND VVV+DR+R+ +K Y ++ ++N TL R++ TS+ F+ + + ++GG+ Sbjct: 888 SINDTVVVFDRVRETVKNYPNR-DPHTTVNDALNSTLARTLNTSITTFLVMFIIFIFGGA 946 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + SF + G+V+ S++F+A+PI I++ R + Sbjct: 947 SMRSFTFAILLGVVIGTYSTLFVASPIAYMIWEKRRSKS 985 Score = 48.5 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 16/191 (8%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 +I LGLDL+GG ++VL ++ D + D FLK V S Sbjct: 66 ARTQQIGLGLDLKGGMNVVLRLNAKDLLRNLSGKNEDP--KFLKALDNAVKSTHSGD--- 120 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 F D E + Q N ++ + +T+ ++ +L Sbjct: 121 ---FIDKFVAE--YKALAPEGQLAVVFGNGSLREEISARSTDVDVIKILKAKY-----ES 170 Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 A E S+ ++R RID+ G+ + G RIL++LPG ++P R+R LL +A + F + Sbjct: 171 ASEASINVLRTRIDRFGVVSPNIQKIEGEGRILVELPGVKEPERVRGLLQQSANLQFWRT 230 Query: 218 LPNNSKKGFMF 228 + + Sbjct: 231 YTYADVESDLI 241 >gi|228923163|ref|ZP_04086454.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836542|gb|EEM81892.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 754 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 190/695 (27%), Positives = 328/695 (47%), Gaps = 23/695 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGADLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + G++V SS+F+A+ I L + + R K R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKKGR 740 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ + + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFIIVLLIGGVIGSAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|229129691|ref|ZP_04258659.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-Cer4] gi|228653808|gb|EEL09678.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-Cer4] Length = 754 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 190/695 (27%), Positives = 328/695 (47%), Gaps = 23/695 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + G++V SS+F+A+ I L + + R K R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKKGR 740 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|188995566|ref|YP_001929818.1| bifunctional preprotein translocase subunit SecD/SecF [Porphyromonas gingivalis ATCC 33277] gi|188595246|dbj|BAG34221.1| protein-export membrane protein SecD/SecF [Porphyromonas gingivalis ATCC 33277] Length = 981 Score = 325 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 213/826 (25%), Positives = 374/826 (45%), Gaps = 57/826 (6%) Query: 60 VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113 D + + LR+ + G+ ++++ Q +I + + E + Sbjct: 156 ADVVRLLKEKYNSAVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRT 215 Query: 114 KVTLFLQGVNSKL-----------------------NVDPKKNLLVTTTEKEISIVLSQN 150 + + N D TT+ + S Sbjct: 216 LLQRSANLQFWRTYKFEEVSGDLIAANDRLSELAMNNTDATPETEPATTDSVAATADSTA 275 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGI----SESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 S + Q R D + +G R + + L Sbjct: 276 VQAVADSATVAQEEAKDATRKDALFSLLTPVNRGGAVVGVARRANMAQISEMLQQAHDLK 335 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT- 265 T + F ++ G + A ++ Sbjct: 336 VTREDVLFLWGAKAIEDPETKKETDLYELYAIRT-NRTGDPDLGGDVVTSAKSDIQNDFG 394 Query: 266 -HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 +P+V ++ +E GAR++ +T+DN+G+ +A+VLDG V +AP +N I G++QISG+FT Sbjct: 395 RSEPIVSMTMNEEGARKWARITKDNVGRAIAIVLDGVVYSAPNVNDEITGGRSQISGHFT 454 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 +E AG LA +L +G + ++I +E +G LG++SI G + + LV+++ +M + YG Sbjct: 455 VEEAGDLANVLNSGKMDATVSIEQENVIGPTLGAESIKAGFLSFLLALVILMCYMCLAYG 514 Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 GL+A+ ++ +N TL +L+ A LTL IAG+VL +G+AVD+N+L+ ERI+EE R Sbjct: 515 FLPGLIANGALIVNSFFTLGVLASFHAVLTLSGIAGLVLTLGMAVDANVLIFERIKEELR 574 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 ++ ++ G+ A+S IFDSN+T +I ++LF +G G +RGFA T+ + ++ S TA Sbjct: 575 AGKTPIRAVTDGYGNAFSAIFDSNVTTIITGIILFLYGTGPIRGFATTLIIGLIASFITA 634 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + R + + + ++ I L+ + + R G I ++ + + Sbjct: 635 VFLTRIVFEKLAKKGRLDKITFTTSITRNLL-VNPSYNILGKRKTGFIIPVIIIVLGLIA 693 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 FT GLN GI+F GG V ++PV VRS L S + + E + Sbjct: 694 SFTIGLNRGIEFSGGRNYVVKFDQPVSSEAVRSALSSPLQEKVLVTSIGTEGTEVRISTN 753 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-----------NTEIVGPKISRELIRKGIVG 672 ++ E+ K + T Q +++ V P +S ++ R I Sbjct: 754 YKIQEESEETEAEITDKLYQSLKGFYTQQPTADQFLDNIISSQKVSPSMSSDITRGAIWA 813 Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725 V++S I M IYI IRF+ F+ G ++ + +AL F +E + +AA Sbjct: 814 VLLSMIFMAIYILIRFRDISFSAGVFVSVAATTFCIIALYALLWKILPFTMEIDQNFIAA 873 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 +L +IGYS+ND VVV+DR+R+ MKLY + +I+ ++N TLGR++ TS+ FI +L Sbjct: 874 ILAIIGYSLNDTVVVFDRIRETMKLYPNRDRY-QVINDALNSTLGRTLNTSLTTFIVMLV 932 Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++GG+ + SF + GIV+ S++F+A P+ I + A Sbjct: 933 IFIFGGATMRSFTFSILLGIVIGTYSTLFVATPLAYEIQKRKLNKA 978 Score = 57.8 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 97/254 (38%), Gaps = 41/254 (16%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA---------------------- 38 M+N +++++ S + I +F+ + + Sbjct: 1 MQNKGFVIVITSALAIICAFYLSFSFVTNRYEKKAKAMGDVAGMAYLDSMSNEKVWFGYT 60 Query: 39 ---MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95 +I LGLDL+GG +++L+++ D + D K + Sbjct: 61 LKEAQAQQIGLGLDLKGGMNVILKLNASDLLRNLSNKSLDP---NFNKALENAAKSTEQS 117 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + I + + R + + + D + + +T+ ++ +L + Sbjct: 118 DFIDIFVKEYRKLDPNG-------RLAVIFGSGDLRDQITAKSTDADVVRLLKEKY---- 166 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 + A+E S ++R RID G+ +QR G RIL++LPG +DP R+R LL +A + F Sbjct: 167 -NSAVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRTLLQRSANLQF 225 Query: 215 HKVLPNNSKKGFMF 228 + G + Sbjct: 226 WRTYKFEEVSGDLI 239 >gi|163942161|ref|YP_001647045.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus weihenstephanensis KBAB4] gi|163864358|gb|ABY45417.1| protein-export membrane protein SecD [Bacillus weihenstephanensis KBAB4] Length = 755 Score = 325 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 189/695 (27%), Positives = 330/695 (47%), Gaps = 22/695 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + ++ L A V + + + GNFT+E+A L Sbjct: 175 MVIWLDFEEGKDSYKAESAKTNNQKFLSA----ATVSQVFNQAEVSIVGGNFTVESAKEL 230 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ +I LFM+V Y GLVA Sbjct: 231 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 290 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 291 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 350 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ STI D+NIT + A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 351 FRAGNHRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 410 Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560 +++ + K + + +IP I F+ SI+ I Sbjct: 411 GLLVKSRYFDKKLSYFGVKEKDIIPLTKGAVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 470 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + +S + +L+ L I + Sbjct: 471 AIILPIFKMNLGIDFASGTRIDLQSKQATTVSNIHKDLKELNIDVKEEDIVPTGDDNKGF 530 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I+++ + Sbjct: 531 AVRTLGVLSKDEIAKTKTF----FNDKYGTEPNVSTVSPTIGKEIARNAFIAVLIASLVI 586 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F+LF IE +LT +AA+LT+IGYS+ND +V Sbjct: 587 ILYVSIRFRFTYALSAVIALLHDAFVMIVMFSLFQIEVDLTFIAAILTIIGYSINDSIVT 646 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 647 FDRNRELYKQKKRVRDIKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 706 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ + G+VV SSIF+A+ I L + + R K + Sbjct: 707 SLALLIGLVVGTYSSIFVASQIWLMLENRRLKRGK 741 Score = 117 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 92/261 (35%), Gaps = 6/261 (2%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + + + D S + Q + V + + Sbjct: 169 PPPTNLMVIWLDFEEGKDSYKAESAKTNNQKFLSAATVSQVFNQAEVSIVGGNFTVESAK 228 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + ++ + VG K ++ + + I I + +++ + ++ Sbjct: 229 ELSSLLNAGALPVDLKEMYS--TSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLP- 285 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L A+ L L I TL F L +AA++ +G +V+ ++ Y+R+++ +K+ Sbjct: 286 GLVAVIMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKI-- 343 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 S + +L + ++ + + +G S + FA + I+V ++ Sbjct: 344 -GKSMMSAFRAGNHRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITN 402 Query: 813 IFIAAPILLFIYDWRAKNARI 833 +F +L + R + ++ Sbjct: 403 VFGTRFLLGLLVKSRYFDKKL 423 Score = 60.9 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ ++I + A + ++ + ++ Sbjct: 54 KGDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|182415275|ref|YP_001820341.1| protein-export membrane protein SecD [Opitutus terrae PB90-1] gi|177842489|gb|ACB76741.1| protein-export membrane protein SecD [Opitutus terrae PB90-1] Length = 849 Score = 325 bits (831), Expect = 3e-86, Method: Composition-based stats. Identities = 220/852 (25%), Positives = 399/852 (46%), Gaps = 49/852 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R N W ++L + + +P Q +D + + L Sbjct: 3 RRNLWKLLLTLAMLGWAIATLIP-LQDQPFVDYVKAHVTAKPAEFNALL----------- 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + LK+ G + Q I + + ++ + L+ Sbjct: 51 -AEASAMKREGRVLSEFVALKQIGKDRRLDLTQYFPDIRIESNLTNVEKRNEILLAELLR 109 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + V T E ++ + +++++EII RI+ G++E Sbjct: 110 RSKSRLPLGLDLAGGVAFT-LEAVQRPGDTADERERAEKLDKAIEIISTRINAFGVAEPL 168 Query: 181 IQRLGSHRILIQLPGE--QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR---- 234 I+++G++RI +QLPG +D + + A++ F V P + + Sbjct: 169 IRKVGNNRIEVQLPGVNTRDNPEIVDQVKAPARLDFRIVHPTLTPAPGVETPPGYEIMSL 228 Query: 235 -------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 ++ + ++ E++G ++ + A KP V + F G +RF EVTR Sbjct: 229 DYEGRRGETGSEELFIKRVPEMTGEAISNSFAR-PDMYGKPEVILQFTNEGKQRFAEVTR 287 Query: 288 DNIGKPLA--------VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339 +VLD ++ +AP + + I S AQI+G+FT A LA +L Sbjct: 288 QIAEGGRQAGRLGRLAIVLDNKLYSAPTVREEINSESAQITGSFTDREALNLANVLN-NP 346 Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399 L ++L + E+ VG + ++ G A G+ L+ +FMI Y G VA S+ LN++ Sbjct: 347 LDVELQVKEQYEVGPTMAESAVESGKRATYIGVGLVAVFMIGYYTIAGFVAVLSVTLNIL 406 Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459 + L +L+ LGATLT+P IAGIVL +G+AVD++IL+ ER+REE +S+ + G RA Sbjct: 407 VVLGVLASLGATLTMPGIAGIVLTVGMAVDAHILIFERMREELSAGKSLVAAFHSGHDRA 466 Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519 ++TI D+N+T LI +V++ FG G V+GF +T+ + I ++FTA+ + + ++ F+I + Sbjct: 467 FTTIVDANLTTLITSVLMIVFGNGPVKGFGVTITIGIFSTLFTALLVSQMLLDFLISSGR 526 Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGG 578 MK AI F++ S + + + G + YGIDF GG Sbjct: 527 MKK------MLMMSFLQPPAIDFVKYGKRAFIASWIVVAIGLSAIAFRGSSIYGIDFAGG 580 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + + V++ V+ L++ ++G+ L Q Q V + Sbjct: 581 DVINLAFKQEVNIEQVQRTLDNAKLGETLPFYQSEIGGGQRLLNLQTEAGKGQAAVATL- 639 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 K + + IVGP + RE+ ++ + +S + +++Y+ RF+ + +GA+ Sbjct: 640 --KSAYPNAGFEVAGSTIVGPSMGREIQLNALLSIGLSILGIMLYVAFRFEIGYGIGAVV 697 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 + I D+ T+G F L G +F+ V A+L ++GYS+ND +VV+DR+R+ +K + + R Sbjct: 698 STIHDVLLTIGIFVLSGRQFSAPMVGAILLIVGYSINDTIVVFDRIREELKNNPNT-NLR 756 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 D+I+ + + RS+ TS+ F++ L + ++GG V+ + GIV SS+FIA P Sbjct: 757 DVINLATSRVFARSILTSLTTFLAALALYLFGGGVVNDLSFTFLVGIVTGTFSSLFIATP 816 Query: 819 ILLFIYDWRAKN 830 I + + K+ Sbjct: 817 IFYWWHKGDRKH 828 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 77/204 (37%), Gaps = 4/204 (1%) Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 L + + ++ VGP ++ + G I + +++ + Sbjct: 332 TDREALNLANVLNNPLDVELQVKEQYEVGPTMAESAVESGKRATYIGVGLVAVFMIGYYT 391 Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 A+ ++ L+I LG A G + +A ++ +G +V+ +++++RMR+ + Sbjct: 392 I-AGFVAVLSVTLNILVVLGVLASLGATLTMPGIAGIVLTVGMAVDAHILIFERMREELS 450 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809 S + V ++ I+ + M V+G + F + + GI Sbjct: 451 A---GKSLVAAFHSGHDRAFTTIVDANLTTLITSVLMIVFGNGPVKGFGVTITIGIFSTL 507 Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833 +++ ++ +L F+ + Sbjct: 508 FTALLVSQMLLDFLISSGRMKKML 531 >gi|94985340|ref|YP_604704.1| bifunctional preprotein translocase subunit SecD/SecF [Deinococcus geothermalis DSM 11300] gi|94555621|gb|ABF45535.1| protein-export membrane protein SecD [Deinococcus geothermalis DSM 11300] Length = 762 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 214/686 (31%), Positives = 363/686 (52%), Gaps = 17/686 (2%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE--QDPSRLRQLLGT 208 +++ +I RI+ +G++E T+ G R+++++PG Q R R+++ Sbjct: 81 ESGTATRDELDRVKTVIENRINALGVAEPTVTVAGGKRVVVEIPGATPQVQQRAREIIQR 140 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 TA++ F V P + G V+ +G + A A DP T + Sbjct: 141 TARLEFRIVKPGVQPDPTLARQDPPSG--GYTLSDLGPVQATGEVIADAKAATDPTTGRW 198 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 VV+ GA +F + T N+G+ +AVVLD R+ + I Q QISGNF+ E A Sbjct: 199 VVNFQTTPAGAEKFGDFTGKNVGRLMAVVLDDRIQSVATIQQ-RLFRDVQISGNFSAEEA 257 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWG 387 LA +L++G+LPIK+ ER +G LG+D+I G A V G+ L+ + + Y +G Sbjct: 258 SQLALVLKSGALPIKIKTEAERAIGPTLGADAIRSGAIAAVVGIGLVFAMLFLYYGFWFG 317 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 LVA + + IL L LL GATLTLP IAG+VL IG AVD N++ ERI+EE +K + Sbjct: 318 LVAALGLLFSSILILGLLGGFGATLTLPGIAGLVLTIGAAVDGNVISFERIKEELQKGKG 377 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 + S+ G+ + + I D N + L++ + L+ + G V+GFA+T+ + ++ S F+ + Sbjct: 378 LKNSIGAGYQHSTAAILDVNASHLLSALALYNYSTGPVKGFAVTLIIGVVASTFSNLVFA 437 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 + + ++ + + S + I FM+ +S+ ++ +L T Sbjct: 438 KWALQWLAQRRPNASAPVRLGK--------TNINFMQVAPIVTSVSVALALVGGGILATR 489 Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 GLNYG+DFK G L V A+ VRS + + ++ Q+ ++ L Sbjct: 490 GLNYGVDFKPGTTLTVRASTQTTTEQVRSAVAGAGVPKVTPQSATIQRTETPGLSGAQYT 549 Query: 628 SVAQTRVLEMVKKKITEIV--PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 V++ I P +Q TE VGP + +EL +K I V++ +L+Y+ Sbjct: 550 VKVPELTTPEVQQLSAAISKLPQGEVQATETVGPAVGQELTQKTIYAVLLGLGLILVYVG 609 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 RF + LG+I I D+ +G F+L G+EF + VAA+LTLIGYS+ND ++V DR+R Sbjct: 610 FRFDFIMGLGSILAAIHDVAIAMGLFSLLGLEFTVATVAALLTLIGYSLNDSIIVSDRIR 669 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 +N++ +R++++ SIN+TL R+V TS++ + ++ + ++GG V+ F++ + GI Sbjct: 670 ENLREM-RGRPYREIVNTSINQTLSRTVMTSISTMLPLVSLLIFGGPVLRDFSLILLIGI 728 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831 +V SSI+I AP+++++ +W+ K Sbjct: 729 LVGTYSSIYIVAPMVVYLEEWKDKRK 754 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 62/228 (27%), Gaps = 9/228 (3%) Query: 24 PNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83 P PQ+ + ++LGLDL+GG + L + L + + + Sbjct: 46 PWDHPQTPFSLWNDRF--QFMTLGLDLKGGLRIELAPESGTATRDELDRVKTVIENRINA 103 Query: 84 EGIGVFSMRQ-IQNKITLSFADSRF--KENIADKVTLFLQGVNSKLNVDPKK-NLLVTTT 139 G+ ++ ++ + + ++ + + + + + L Sbjct: 104 LGVAEPTVTVAGGKRVVVEIPGATPQVQQRAREIIQRTARLEFRIVKPGVQPDPTLARQD 163 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 LS Q I + G Q + ++ Sbjct: 164 PPSGGYTLSDLGPVQATGEVIADAKAATD---PTTGRWVVNFQTTPAGAEKFGDFTGKNV 220 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247 RL ++ S + + + G ++ +++ Sbjct: 221 GRLMAVVLDDRIQSVATIQQRLFRDVQISGNFSAEEASQLALVLKSGA 268 >gi|212550506|ref|YP_002308823.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548744|dbj|BAG83412.1| preprotein translocase SecD/SecF subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 976 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 194/803 (24%), Positives = 364/803 (45%), Gaps = 44/803 (5%) Query: 71 QMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128 + + LRS + K G+ ++++ + I++ + + D + + Sbjct: 176 ENSFNVLRSRIDKFGVVAPNIQRMAKEGLISIELPGVKDPNRVRDLLQGTANLEFWETYS 235 Query: 129 DPK--KNLLVTTTEKEISIVLSQNN---------------IDQVISHAIEQSMEIIRQRI 171 + + + L+ SI L+ Q A ++ E ++ + Sbjct: 236 ESEIHQTLIFANNIIRDSIQLAHQYFNKTAVNNNSATMGFSPQTTVKAKSKASEDLQYPL 295 Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSR-LRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230 ++ + + L + L K Sbjct: 296 FTSLRLNPNQPHQTCVVASVKRNEKPNIDAFLGNSKVKALLDANRISLKWTIKPRSEENG 355 Query: 231 RFLRDSDGNQYLVEDK-VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 + + Y+ +SG + A+ +F +H V ++ A+ + +T+DN Sbjct: 356 VYDLIALKVSYIDNRPKPILSGDVIQDASDHFGQTSHYAEVSMTMKSEAAKVWARLTKDN 415 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 +GK +A+VLD V + P ++ I G ++I+GNFT E A LA +L++G + + IV+E Sbjct: 416 LGKAIAIVLDDAVYSFPTVSSEINDGTSRITGNFTAEQAKDLANVLKSGKMSARAKIVQE 475 Query: 350 RNVGADLGSDSIYKGTC-AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 VG LG +I G I+A +LI+ +++ GL+A ++ +N+ +L +++ Sbjct: 476 EIVGPSLGQQAIKLGFISFIIALTILILYLILIYGLGPGLIASSALVINLFFSLGVMASF 535 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 LTL IAGIVL + LAVD+N+L+ ERI+EE R + +++ G+ +A+ IFD+N+ Sbjct: 536 HVVLTLSGIAGIVLALALAVDANVLIYERIKEEMRGGSKIRKAVEEGYRKAFPAIFDANL 595 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T+LI ++L G G ++GFA T+ + I +S FTA+ + R + K+++ Sbjct: 596 TSLITGIILLICGTGPIQGFAFTLIIGIGVSFFTAVFLTRLTYETFLSKGKLQNFTFITK 655 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + F++ + + + S GLN GID+ GG + +P Sbjct: 656 LSKNFLVS-PNFNFLKNLRLLYIVLSVIATMSFVSFLFRGLNKGIDYTGGRNYVIRFKQP 714 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV-------------AQTRVL 635 ++ + V+ L G N + +S ++L Sbjct: 715 INTAQVQELLNPYFENHTPSVITIGTANQVRISTNYMIESNDLCTDSIIQYKLYEGLKLL 774 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694 V + + +Q+ + VGP I+ +L +K I V ++ +A+ +Y+ +RF+ +++ Sbjct: 775 LPVGTTYDQFINNGYVQSLQKVGPSIADDLKQKAIWAVGLAVLAIGLYVLLRFRDISYSV 834 Query: 695 GAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 G+I L D LG ++L F +E + T + A+LT++GYS+NDKVV++DR+R+ + Sbjct: 835 GSIAALTFDTLFILGTYSLLWGIVPFSLEVDQTFIGAILTVVGYSINDKVVIFDRVREYI 894 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + F ++ + S+N TL R+ TSM+ + +L + +GG I SF+ M G+V+ Sbjct: 895 FFHPKKNKF-EIFNASLNSTLDRTFNTSMSTLLVLLIIFFFGGESIRSFSFAMILGVVIG 953 Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831 SS+FIAAPI I + K Sbjct: 954 TLSSLFIAAPIAYEIQIRKKKKK 976 Score = 57.8 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 88/251 (35%), Gaps = 48/251 (19%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLP--------------QSMLDRFPSAMPKNRI-- 44 M+N + L + I + +F+ S+ +++ ++ +I Sbjct: 1 MQNKGLVKFLVVALTLISIFYLSFSFVTNKYYKRARKYSGGIPSLENQYLDSLANEKIWL 60 Query: 45 ------------SLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 +LGLDL+GG ++++E+ D + D + + Sbjct: 61 GYSLEKCRAMEINLGLDLKGGMNIIMEIASADILKSLSDNNPDLIFNQ--ALDRATELQS 118 Query: 93 QIQNKITLSFADSR---FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149 + +FA + + + + ++ Sbjct: 119 KKGKDFVSAFALAYKELDPNAKLSVIFSTYELKGKICLQSTNEEVIAV------------ 166 Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGT 208 + + A E S ++R RID+ G+ IQR+ I I+LPG +DP+R+R LL Sbjct: 167 --LRNELRIAYENSFNVLRSRIDKFGVVAPNIQRMAKEGLISIELPGVKDPNRVRDLLQG 224 Query: 209 TAKMSFHKVLP 219 TA + F + Sbjct: 225 TANLEFWETYS 235 >gi|261754868|ref|ZP_05998577.1| protein-export membrane protein secD [Brucella suis bv. 3 str. 686] gi|261744621|gb|EEY32547.1| protein-export membrane protein secD [Brucella suis bv. 3 str. 686] Length = 781 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 395/719 (54%), Gaps = 24/719 (3%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 57 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + + FM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 292 ERTIASALGEDYASAAVLAALVVGL----FMVLSYGILGVIALVALVVNIIILTAVLSLI 347 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 348 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 407 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 408 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 467 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 468 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 524 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 525 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 581 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 582 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 641 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 642 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 700 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 701 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 759 Score = 98.2 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 32 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 92 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265 Query: 243 VE 244 + Sbjct: 266 FD 267 >gi|320120444|gb|ADW16147.1| protein-export membrane protein SecDF [Filifactor alocis ATCC 35896] Length = 713 Score = 324 bits (829), Expect = 5e-86, Method: Composition-based stats. Identities = 198/681 (29%), Positives = 352/681 (51%), Gaps = 34/681 (4%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 ++ ++Q++ + R+R+D +G++E +I R G R+ I+LPG ++ +G TA Sbjct: 64 ATGDELNRIMDQTIAVFRKRVDAMGLTEPSIVREGEKRVRIELPGVKNAEEAMTSIGKTA 123 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 ++ F K V ++G + + DPKT PVV Sbjct: 124 QLMFVKED--------------------------GSVVLTGKEVKDSQVAVDPKTQIPVV 157 Query: 271 DISFDEMGARRFFEVTR--DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 + F++ G + F E T + ++LD ++++AP + IP+G A+I+G+FT E+A Sbjct: 158 TLEFNDEGTKAFAEATAELAPTKGKIMIILDDQLISAPSVQSPIPNGNAEINGDFTYESA 217 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 L++++R G+LP+ +E A LG ++ + G++L++L M+ +Y G Sbjct: 218 STLSSLIRGGALPVNFKEIESSVTTATLGDKALQNSIKGALLGILLVMLLMLAVYRLPGF 277 Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448 +AD ++ +++ + + L ATLTLP IA +L +G+AVD+N+++ ERI+EE RK +S+ Sbjct: 278 IADIALVAYMLIVAYVYAALHATLTLPGIAAAILSVGMAVDANVIIFERIKEEMRKGKSI 337 Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508 S++ GFS+A STI DS IT IA VVL++FG G ++GFA+T+ + IL S+FTA+ I + Sbjct: 338 RISIESGFSKALSTILDSQITTFIAGVVLYYFGTGPIKGFALTLMIGILASIFTAVFITK 397 Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 ++ I + + + FM + IS + I + G Sbjct: 398 LLLKSFINAFHITKTEYFGVKVGMDKES-KLFDFMGKKKIFFSISAIVIIIGLATSTFSG 456 Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 LNYGIDF GG +G+ + V+ + +R + + +S K+ + + D+ Sbjct: 457 LNYGIDFTGGTTMGINLGKYVETTEIRE-ITNEIDPTMSINYLGENKDSVELKTIKDLDN 515 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + V E K K + GP + +E+ K V I+ ML+Y+ RF Sbjct: 516 AERKAVFEKFKTKYNLTDDAFYKSSQ--FGPTVGKEIKHKAFTSVAIATFCMLLYVSFRF 573 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + + + AI L+ D+ +A+ I N VAA+LT++GYS+ND +V++DR+R+ + Sbjct: 574 QLAYGIAAIIALLHDVLVVFAVYAVLRIPLNSPFVAAMLTVVGYSINDTIVIFDRVREEL 633 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + ++++KSI++TL RS+ TS+ +++L + + G I F +P+ GI V Sbjct: 634 --GGRRSNLEEVVNKSISQTLKRSINTSLTTLLAILSLYIMGVESIREFTLPLLAGITVG 691 Query: 809 ASSSIFIAAPILLFIYDWRAK 829 SS+ IA + + + K Sbjct: 692 TYSSVCIAGSLWVILTKKLRK 712 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 48/415 (11%), Positives = 120/415 (28%), Gaps = 23/415 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + + + + + + + K++I GLDL+GG ++V E Sbjct: 1 MKQSKTKSMSIFFLVILLIASFGLAAIKGVNVGSKTFGNVKSQIRQGLDLKGGFYVVYEA 60 Query: 61 DED---DFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVT 116 + D D +N + R + G+ S+ R+ + ++ + + E + Sbjct: 61 ETDATGDELNRIMDQTIAVFRKRVDAMGLTEPSIVREGEKRVRIELPGVKNAEEAMTSIG 120 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 Q L+ + + + + QV Q + + D+ Sbjct: 121 KTAQ-------------LMFVKEDGSVVLTGKEVKDSQVAVDPKTQIPVVTLEFNDEGTK 167 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + + + D + + ++ + + + +R Sbjct: 168 AFAEATAELAPTKGKIMIILDDQLISAPSVQSPIPNGNAEINGDFTYESASTLSSLIRGG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 E + ++ L K + + M A +I + Sbjct: 228 ALPVNFKEIESSVTTATLGDKALQNSIKGALLGILLVMLLMLAVYRLPGFIADIALVAYM 287 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 ++ V A +P A I A ++ + +I G Sbjct: 288 LIVAYVYAALHATLTLPGIAAAILSVGMAVDANVIIFERIKEEMRKGKSIRISIESGFSK 347 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 +I V+ + Y G + F++ L + + ++ + + T Sbjct: 348 ALSTILDSQITTFIAGVV------LYYFGTGPIKGFALTLMIGILASIFTAVFIT 396 >gi|218296556|ref|ZP_03497284.1| protein-export membrane protein SecD [Thermus aquaticus Y51MC23] gi|218243098|gb|EED09630.1| protein-export membrane protein SecD [Thermus aquaticus Y51MC23] Length = 736 Score = 324 bits (829), Expect = 5e-86, Method: Composition-based stats. Identities = 211/701 (30%), Positives = 361/701 (51%), Gaps = 25/701 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLR 203 +L + +++ +E++ ++ RI+ +G++E IQ G RI+++LP + D R Sbjct: 45 ILLEADVENPTPDDLEKARTVLENRINALGVAEPVIQIQGQRRIVVELPGLSQADQDRAL 104 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG----------NQYLVEDKVEISGIH 253 +L+G A + F + + + LR++ + ++G Sbjct: 105 KLIGQRAVLEFRILKEGATGTTVAQINQALRENPRLKREDLEKDLIKPEDLGPPLLTGAD 164 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313 L A A FD +P V ++F GA++F EVTR N+ + LA+VLDG+V TAPVI QAI Sbjct: 165 LADARAVFDQFG-RPQVALTFTPEGAKKFEEVTRANVNRRLAIVLDGKVYTAPVIRQAIT 223 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 G+A I G +E A +A +LR+G+LP+ L +VE R +G LG D+I G A + G + Sbjct: 224 GGQAVIEGLSGLEEASEIALVLRSGALPVPLKVVEIRAIGPTLGQDAIQAGIRAALIGTL 283 Query: 374 LIVLFMIVLYGKW-GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432 I L + YG GLVA + L L LLS LGATLTLP IAG+VL +G AVD N+ Sbjct: 284 AIFLLIFAYYGPSLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNV 343 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 L ERI+EE R + ++ GF + TI D N L+A L+ + G VRGFA+ + Sbjct: 344 LSFERIKEELRAGKRFRQAIPEGFRHSTLTILDVNAAHLLAAAALYQYATGPVRGFAVVL 403 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552 + ++ S+F+ + R ++ + +++ + FM + Sbjct: 404 AIGVVASVFSNLVFSRYLLERLAERGEIR---------PPMWLVDPRWNFMGPARYITAA 454 Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 ++L + + ++FT G NY IDF GG + + + +R L + Sbjct: 455 TLLLAALASAVVFTKGFNYSIDFTGGTAYLIRTSPETGVDTLRRFLAEKGFPAKEAVITE 514 Query: 613 GEK-NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + + + +++ + + +E VGP + +EL R I+ Sbjct: 515 VQAPTASASYKEFSLKLPPLEDAKRLELERLFREELKAQVLTSETVGPAVGQELRRNAIM 574 Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731 V++ +LIY+ RF W F + ++ + D+ G ++L G+EF+++ +AA+LT++G Sbjct: 575 AVLVGLGLILIYVAFRFDWTFGVASVLAVAHDVAIVAGIYSLLGLEFSISTIAALLTIVG 634 Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791 YS+ND +VV DR+R+N KL I + +++++SIN+TL R+V TS+ + ++ + GG Sbjct: 635 YSINDSIVVSDRIRENQKLL-RGIPYAEMVNRSINQTLSRTVMTSLTTLLPIIALLFLGG 693 Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 SV+ FA+ + GI V SSI++ + +++F + R + + Sbjct: 694 SVLRDFALAIFVGIFVGTYSSIYVVSALVVFWRNLRGQQPK 734 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 4/113 (3%) Query: 33 DRFPSAMPKNR-ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + P I LGLDL+GG ++LE D ++ L+ L + + G+ + Sbjct: 21 AVWKPWAPSEPKIRLGLDLKGGLRILLEADVENPTPDDLEKARTVLENRINALGVAEPVI 80 Query: 92 RQIQN-KITLSFAD--SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141 + +I + ++ + L + + Sbjct: 81 QIQGQRRIVVELPGLSQADQDRALKLIGQRAVLEFRILKEGATGTTVAQINQA 133 >gi|254704199|ref|ZP_05166027.1| SecD/SecF family protein-export membrane protein [Brucella suis bv. 3 str. 686] Length = 771 Score = 323 bits (828), Expect = 6e-86, Method: Composition-based stats. Identities = 238/719 (33%), Positives = 395/719 (54%), Gaps = 24/719 (3%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 L + L L + + + + + + A I+RQR++++G Sbjct: 47 RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234 ++ G ++I +++PG D L+ +L +SF + S + G Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161 Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 D YL++ ++G + A A+ +PV+ ++ D+ G RR ++T Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 A+V+D +V++AP ++ + + + QI G F ++ A +A +LR+G+LP + ++E Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER + + LG D A + + FM++ YG G++A ++ +N+I+ A+LSL+ Sbjct: 282 ERTIASALGEDYASAAVLAALVVGL----FMVLSYGILGVIALVALVVNIIILTAVLSLI 337 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV +++ GF RA STI D+N+ Sbjct: 338 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 397 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ +R K K + L Sbjct: 398 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 457 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587 L+P I FMR +F +GIS+L + L G NYGIDF+GG + + A N Sbjct: 458 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 514 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +L + L L I ++ LV + Q A+ V ++ + + Sbjct: 515 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 571 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W ALGA+ + + D+ Sbjct: 572 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 631 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y S +ID SIN+ Sbjct: 632 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 690 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ SSIFIAAP+L+ Sbjct: 691 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 749 Score = 97.8 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W L + + L+IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 22 SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122 L+ ++ +R L++ G G + + +N+I + + + D +T+ Sbjct: 82 G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 ++ + + T S ++ + V + + D +++I Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 ++ + RL L + SF V+ N + Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255 Query: 243 VE 244 + Sbjct: 256 FD 257 >gi|219669636|ref|YP_002460071.1| protein-export membrane protein SecD [Desulfitobacterium hafniense DCB-2] gi|219539896|gb|ACL21635.1| protein-export membrane protein SecD [Desulfitobacterium hafniense DCB-2] Length = 735 Score = 323 bits (828), Expect = 6e-86, Method: Composition-based stats. Identities = 234/703 (33%), Positives = 372/703 (52%), Gaps = 55/703 (7%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTA 210 + + +E++ II +R++++G+SE IQ RI++ L G QDP + + L TTA Sbjct: 56 GAAITADDVEKAKSIIEKRVNEMGLSEPVIQADLDKKRIIVDLAGVQDPDKAVEALKTTA 115 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 K++F + V I G L A A +++ VV Sbjct: 116 KLTF--------------------------KDPQGNVVIEGGDLKDARAGQGERSY--VV 147 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 ++F GA++F +VT NIG+ + + LD ++L P + AI +G+A+I+G ++E A Sbjct: 148 HLTFSPEGAKKFADVTSRNIGQNIGIYLDDQLLQNPQVQAAITNGQAEITGYASLEEAAQ 207 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 A +LR+G+LP+ L+I E+R VGA LG DS+ K A + LV I+LFM+VLY GLVA Sbjct: 208 YAVLLRSGALPVSLSIEEKRTVGASLGVDSLNKSINAGIVALVFILLFMLVLYRLPGLVA 267 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + S+ + ++ L L GA LTLP IAGI+L IG+AVD NI++ ERI+EE R +S+ Sbjct: 268 NISLIVFTLIVLWALKGFGAVLTLPGIAGILLSIGMAVDLNIIIYERIKEELRLGKSLRA 327 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 S++ GFSRA+ T+FDSNIT L A LFF G +++GFAIT+G+ I S+FTAI+ R + Sbjct: 328 SVEAGFSRAFLTVFDSNITTLFAAATLFFLGTSSIKGFAITLGIGIFASLFTAITFTRML 387 Query: 511 MIFIIRYKKMKSIDINPLSRFF----------------------LIPDCIAIQFMRARFW 548 + +I+ + + R ++ R+ Sbjct: 388 LRWIVGINPRMNTAWFGVKRENDASGKKTGEATPATQAATYEDVKASMPFYFNVVKRRYI 447 Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608 +S++ S+ LFT LN G+DF GG L + ++ V + +ES+ + Sbjct: 448 WFALSLIMIAVSLGSLFTQKLNLGVDFTGGTMLDMKFSQQVTQEKITQAMESVGLEGPVV 507 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 Q D + + L+R D + + + + VGP I +EL Sbjct: 508 QLSDNDTSALIRTSALEEDKRNE----LLTALQTQVGDFDKESLKEDKVGPAIGQELTEN 563 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + + I+A+ ML+YI RF++ +A+ I L+ D+ T+G F+LF E + T VAA+LT Sbjct: 564 AFLSLAIAAVLMLVYIGFRFQFAYAVSGILALVHDVIITVGIFSLFQWEIDATFVAAILT 623 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 + GYS+ND VV++DR+R+N S+ D++DKS+ + +GRS+ T + IS+L + + Sbjct: 624 IFGYSINDTVVIFDRIRENEPRLKRGDSYEDMVDKSVWQMMGRSIKTVLTVLISLLAIYI 683 Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 GG FA+ M G++ A SS+F A+ IL+ I Sbjct: 684 LGGESTQGFALAMLIGVIAGAYSSVFNASQILVEIKKRMKPKR 726 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 18/137 (13%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + + ++ I ++ ++ P + ISLGLDLRGG HLVL+ Sbjct: 1 MKRGSILKLTAALLLIVIAVVFSIQ-----------PLTDSERGISLGLDLRGGVHLVLQ 49 Query: 60 V----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIAD 113 D ++ + + + G+ ++ + +I + A + + + Sbjct: 50 AEPGPDGAAITADDVEKAKSIIEKRVNEMGLSEPVIQADLDKKRIIVDLAGVQDPDKAVE 109 Query: 114 KVTLFLQGVNSKLNVDP 130 + + + Sbjct: 110 ALKTTAKLTFKDPQGNV 126 >gi|149279347|ref|ZP_01885478.1| protein-export membrane protein SecD/SecF [Pedobacter sp. BAL39] gi|149229873|gb|EDM35261.1| protein-export membrane protein SecD/SecF [Pedobacter sp. BAL39] Length = 987 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 198/814 (24%), Positives = 356/814 (43%), Gaps = 59/814 (7%) Query: 70 LQMYSDELRSFLKKEGIGVFSMR--QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127 + +RS + G+ +M+ + N+I + + KE + + + ++ Sbjct: 177 IDRSFTIIRSRIDGFGVVSPNMQKQEGTNRILIEMPGVQDKERVHKLLQGSAELQFWQVY 236 Query: 128 VDPKKNLLVTTTEKEISIVL-----------------------SQNNIDQVISHAIEQSM 164 + + + K ++ VL + + Sbjct: 237 NNEEVYSTMENINKTLASVLKVTAPAATAAAGTDTAAKSESKLAGLAKSTDSKDSAAVKT 296 Query: 165 EIIRQRIDQIGISESTIQRLGSHR------ILIQLPGEQDPSRLRQLLGTTAK-----MS 213 + + + + + + + ++ ++D +++ S Sbjct: 297 QELAKSNPLFAVLNIPTYQAENGQTSLRPGPVVGWVAQKDTAKVNAFFARPEIASIIPHS 356 Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273 F + + + G + + + D G + +P V + Sbjct: 357 FKFMWGVKPMETGVAGGAKIFELYAIKVTSTDGKPDLGGAAISNARADYDQKGRPEVTMY 416 Query: 274 FDEMGARRFFEVTRDNIGKPLAVV-----LDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 GA ++ +T LD V +AP + IP+G + I+G+FT+ Sbjct: 417 MTGDGAAKWKGITAAASADASNKKAIAIVLDNMVYSAPTVQNEIPNGISSITGSFTVNDT 476 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 LA +L+AG LP IV E VG LG ++I+ G + V V+I++FM + Y K G Sbjct: 477 QDLANILKAGQLPAPARIVGEFVVGPSLGQEAIHNGLLSFVLAFVVILIFMALYYNKAGW 536 Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448 VA+ ++ +N+ + +L LGA LTLP IAGIVL IGL+VD+NIL+ ER+REE + Sbjct: 537 VANLALVINLFFIMGILVSLGAVLTLPGIAGIVLVIGLSVDANILIFERVREELTLGKPT 596 Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508 ++ GF A S+I DSN+T L+ V+L+ FG G V+GFA T+ + IL S+F A+ I R Sbjct: 597 PLAIKEGFKHAMSSIIDSNVTVLVLGVILYIFGSGPVQGFATTLCIGILSSLFCAVLISR 656 Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV-GISILFSICSICLLFTH 567 + ++I K + F A F+ R SI+ + I Sbjct: 657 LVFDYLIERKSDITFGNKMTIHAFKNM---AFNFVGHRKVYYTISSIIIVLGFIFYFKNG 713 Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 GLN GIDFKGG V ++ ++ V++ L+ + + G N L Sbjct: 714 GLNLGIDFKGGRTYIVHFDKDMETEDVKAKLDGVFTESETIVKTAGANNELKITTTYHIT 773 Query: 628 SVAQTR---VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 T V + +K + + TI++ E VGP I+ +++ ++ S + M IYI Sbjct: 774 DQETTADKLVEDALKSGLEKTGVKYTIESNEKVGPIIASDIVYGAYGAILFSCLVMFIYI 833 Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDK 737 +RF K + LGA+ L D+ L F+ + F +E +AA+LT++GY++ + Sbjct: 834 VVRFKKLNYGLGAVIALFHDVLLVLSFYTILDGVLPFSLEIGQDFIAAILTVMGYTMTET 893 Query: 738 VVVYDRMRKNMKLYTTSISFRDL----IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 VVV+DR+R+ + + + I+ ++N TL R++ TS+ F +L + ++GG+ Sbjct: 894 VVVFDRIREKLAESGKEDTHGEARNTLINFALNSTLSRTILTSLTVFFVLLVIFIFGGAS 953 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 I F + G ++ SS+ I+ PI++ + + Sbjct: 954 IRGFIFALLIGRIIGTYSSLCISTPIVIDLGKKK 987 Score = 58.2 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 14/183 (7%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 I+LGLDL+GG ++ +E+ + V D +F K + Sbjct: 72 KEINLGLDLKGGMNVTMEISLGELVKSLAGNTDDV--NFNKALSEAQTKLNAGGKDFMAL 129 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 F +K++ + + N D L T E+ LS + + AI+ Sbjct: 130 FVSEY------EKLSPNGKLADFFANQDNASLLKPNATNAEVKTFLSGHA-----NTAID 178 Query: 162 QSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 +S IIR RID G+ +Q+ ++RILI++PG QD R+ +LL +A++ F +V N Sbjct: 179 RSFTIIRSRIDGFGVVSPNMQKQEGTNRILIEMPGVQDKERVHKLLQGSAELQFWQVYNN 238 Query: 221 NSK 223 Sbjct: 239 EEV 241 >gi|229169154|ref|ZP_04296869.1| Protein-export membrane protein SecDF [Bacillus cereus AH621] gi|228614382|gb|EEK71492.1| Protein-export membrane protein SecDF [Bacillus cereus AH621] Length = 754 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 192/695 (27%), Positives = 333/695 (47%), Gaps = 23/695 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGADLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKEL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ +I LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ STI D+NIT + A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNQRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560 +++ + K + + +IP I F+ SI+ I Sbjct: 410 GLLVKSRYFDKKLSYFGVKEKDIIPLTKGAVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + +S V +L+ L I + Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQATTVSNVHKDLKELNIDVKEEDIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I+++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTF----FNDKYGTEPNVSTVSPTIGKEIARNAFIAVLIASLVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF+ +A+ A+ L+ D + F+LF IE +LT +AA+LT+IGYS+ND +V Sbjct: 586 ILYVSIRFRLTYAVSAVIALLHDAFVMIVMFSLFQIEVDLTFIAAILTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ + G+VV SSIF+A+ I L + + R K + Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRRLKRGK 740 Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 89/259 (34%), Gaps = 4/259 (1%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 L V+ + + + + G+ ++ Sbjct: 168 MPPPTNLMVIWLDFEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAK 227 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + + VG K ++ + + I I + +++ + ++ L Sbjct: 228 ELSSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLP-GL 286 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A+ L L I TL F L +AA++ +G +V+ ++ Y+R+++ +K+ Sbjct: 287 VAVIMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKI---G 343 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S +L + ++ + + +G S + FA + I+V +++F Sbjct: 344 KSMMSAFRAGNQRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVF 403 Query: 815 IAAPILLFIYDWRAKNARI 833 +L + R + ++ Sbjct: 404 GTRFLLGLLVKSRYFDKKL 422 Score = 60.9 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ ++I + A + ++ + ++ Sbjct: 54 KGDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|89895205|ref|YP_518692.1| hypothetical protein DSY2459 [Desulfitobacterium hafniense Y51] gi|89334653|dbj|BAE84248.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 736 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 234/703 (33%), Positives = 372/703 (52%), Gaps = 55/703 (7%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTA 210 + + +E++ II +R++++G+SE IQ RI++ L G QDP + + L TTA Sbjct: 57 GAAITADDVEKAKSIIEKRVNEMGLSEPVIQADLDKKRIIVDLAGVQDPDKAVEALKTTA 116 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 K++F + V I G L A A +++ VV Sbjct: 117 KLTF--------------------------KDPQGNVVIEGGDLKDARAGQGERSY--VV 148 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 ++F GA++F +VT NIG+ + + LD ++L P + AI +G+A+I+G ++E A Sbjct: 149 HLTFSPEGAKKFADVTSRNIGQNIGIYLDDQLLQNPQVQAAITNGQAEITGYASLEEAAQ 208 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 A +LR+G+LP+ L+I E+R VGA LG DS+ K A + LV I+LFM+VLY GLVA Sbjct: 209 YAVLLRSGALPVSLSIEEKRTVGASLGVDSLNKSINAGIVALVFILLFMLVLYRLPGLVA 268 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + S+ + ++ L L GA LTLP IAGI+L IG+AVD NI++ ERI+EE R +S+ Sbjct: 269 NISLIVFTLIVLWALKGFGAVLTLPGIAGILLSIGMAVDLNIIIYERIKEELRLGKSLRA 328 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 S++ GFSRA+ T+FDSNIT L A LFF G +++GFAIT+G+ I S+FTAI+ R + Sbjct: 329 SVEAGFSRAFLTVFDSNITTLFAAATLFFLGTSSIKGFAITLGIGIFASLFTAITFTRML 388 Query: 511 MIFIIRYKKMKSIDINPLSRFF----------------------LIPDCIAIQFMRARFW 548 + +I+ + + R ++ R+ Sbjct: 389 LRWIVGINPRMNTAWFGVKRENDASGKKTGEATPATQAATYEDVKASMPFYFNVVKRRYI 448 Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608 +S++ S+ LFT LN G+DF GG L + ++ V + +ES+ + Sbjct: 449 WFALSLIMIAVSLGSLFTQKLNLGVDFTGGTMLDMKFSQQVTQEKITQAMESVGLEGPVV 508 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 Q D + + L+R D + + + + VGP I +EL Sbjct: 509 QLSDNDTSALIRTSALEEDKRNE----LLTALQTQVGDFDKESLKEDKVGPAIGQELTEN 564 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + + I+A+ ML+YI RF++ +A+ I L+ D+ T+G F+LF E + T VAA+LT Sbjct: 565 AFLSLAIAAVLMLVYIGFRFQFAYAVSGILALVHDVIITVGIFSLFQWEIDATFVAAILT 624 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 + GYS+ND VV++DR+R+N S+ D++DKS+ + +GRS+ T + IS+L + + Sbjct: 625 IFGYSINDTVVIFDRIRENEPRLKRGDSYEDMVDKSVWQMMGRSIKTVLTVLISLLAIYI 684 Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 GG FA+ M G++ A SS+F A+ IL+ I Sbjct: 685 LGGESTQGFALAMLIGVIAGAYSSVFNASQILVEIKKRMKPKR 727 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 18/137 (13%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + + ++ I ++ ++ P + ISLGLDLRGG HLVL+ Sbjct: 2 MKRGSILKLTAALLLIVIAVVFSIQ-----------PLTDSERGISLGLDLRGGVHLVLQ 50 Query: 60 V----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIAD 113 D ++ + + + G+ ++ + +I + A + + + Sbjct: 51 AEPGPDGAAITADDVEKAKSIIEKRVNEMGLSEPVIQADLDKKRIIVDLAGVQDPDKAVE 110 Query: 114 KVTLFLQGVNSKLNVDP 130 + + + Sbjct: 111 ALKTTAKLTFKDPQGNV 127 >gi|229062106|ref|ZP_04199431.1| Protein-export membrane protein SecDF [Bacillus cereus AH603] gi|228717258|gb|EEL68933.1| Protein-export membrane protein SecDF [Bacillus cereus AH603] Length = 754 Score = 323 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 188/695 (27%), Positives = 327/695 (47%), Gaps = 23/695 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + A V + + + GNFT+E+A L Sbjct: 175 MVIWLDFEEGKDSYKAEAAKPNPKFLSA-----ATVSQVFNQAEVSIVGGNFTVESAKEL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ +I LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAMIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ STI D+N+T + A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLSTILDANVTTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560 +++ + K + + +IP I F+ SI+ I Sbjct: 410 GLLVKSRYFDKKLSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + +S V +L+ L I + Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQATTVSNVHKDLKELNIDVKEEDIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTEPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF+ +A+ A+ L+ D + F+LF IE +LT +AAVLT+IGYS+ND +V Sbjct: 586 VLYVSIRFRLTYAVSAVIALLHDAFVMMVVFSLFQIEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNSSIRQTIGRSINTVLTVLFPVITLLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ + G+VV SSIF+A+ I L + + R K + Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRRLKRGK 740 Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 90/259 (34%), Gaps = 4/259 (1%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 L V+ + + + + G+ ++ Sbjct: 168 MPPPTNLMVIWLDFEEGKDSYKAEAAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAK 227 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + + VG K ++ + + I I + +++ + ++ L Sbjct: 228 ELSSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAMIFLFMLVFYRLP-GL 286 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A+ L L I TL F L +AA++ +G +V+ ++ Y+R+++ +K+ Sbjct: 287 VAVIMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKI---G 343 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + +L + ++ + + +G S + FA + I+V +++F Sbjct: 344 KSMMSAFRAGNHRSLSTILDANVTTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVF 403 Query: 815 IAAPILLFIYDWRAKNARI 833 +L + R + ++ Sbjct: 404 GTRFLLGLLVKSRYFDKKL 422 Score = 61.2 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ ++I + A + ++ + ++ Sbjct: 54 KGDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|282875938|ref|ZP_06284805.1| protein-export membrane protein SecD [Staphylococcus epidermidis SK135] gi|281294963|gb|EFA87490.1| protein-export membrane protein SecD [Staphylococcus epidermidis SK135] gi|329724672|gb|EGG61178.1| export membrane protein SecD [Staphylococcus epidermidis VCU144] gi|329737172|gb|EGG73426.1| export membrane protein SecD [Staphylococcus epidermidis VCU028] Length = 741 Score = 323 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 175/697 (25%), Positives = 324/697 (46%), Gaps = 22/697 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G +D ++ R+LL T A Sbjct: 32 GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 91 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ + G + + + V Sbjct: 92 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 151 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + ++ + IN + +G +E A + Sbjct: 152 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 211 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AGSLP+ L + +VGA G D++ K A + G+ LI LFM+ Y GLVA Sbjct: 212 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 271 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 272 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 331 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R ++ Sbjct: 332 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 391 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ K + D + F++ + +SIL I Sbjct: 392 SLLVSSNFFKKQYWLFGVKKKDRHDINEGKDVHDLKTSYERLNFVKLAKPLISLSILIVI 451 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + ++ LN GIDF G + + + + + V ++S+ + Q Sbjct: 452 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSVGLEPDQIQINGSGNKNA 511 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + ++ VK + + V P I +EL + + +I+++I Sbjct: 512 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 565 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L ++ L+ D+ + F+LF +E +LT +AAVLT++GYS+ND + Sbjct: 566 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRLEVDLTFIAAVLTIVGYSINDTI 625 Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ T + D++++SI +T+ RS+ T + + V+ + + G I Sbjct: 626 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILILGAPTIF 685 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +F++ + G++ SSIFIA P+ + + K + Sbjct: 686 NFSLALLIGLLSGVFSSIFIAVPLWGMLKKRQFKKTK 722 Score = 63.9 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 ++LGLDL+GG ++ +VD D LQ S L + + G+ ++ N Sbjct: 8 KNVNLGLDLQGGFEVLFQVDPLNKGDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPN 67 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSK 125 +I + A + + ++ Sbjct: 68 RIRVQLAGIKDQAQARKLLSTQANLTIRD 96 >gi|75760570|ref|ZP_00740603.1| Protein translocase subunit secD / Protein translocase subunit secF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902939|ref|ZP_04067080.1| Protein-export membrane protein SecDF [Bacillus thuringiensis IBL 4222] gi|228967487|ref|ZP_04128515.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar sotto str. T04001] gi|74491939|gb|EAO55122.1| Protein translocase subunit secD / Protein translocase subunit secF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228792202|gb|EEM39776.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar sotto str. T04001] gi|228856723|gb|EEN01242.1| Protein-export membrane protein SecDF [Bacillus thuringiensis IBL 4222] Length = 754 Score = 322 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 188/694 (27%), Positives = 328/694 (47%), Gaps = 23/694 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALDQTIFASAIGIALIFLFMLVYYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGTSSVQGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V ++ V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRMDLQSKQAVTVADVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNISTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLLPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + G++V SS+F+A+ I L + + R K Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKRG 739 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|261418402|ref|YP_003252084.1| bifunctional preprotein translocase subunit SecD/SecF [Geobacillus sp. Y412MC61] gi|319767639|ref|YP_004133140.1| protein-export membrane protein SecD [Geobacillus sp. Y412MC52] gi|261374859|gb|ACX77602.1| protein-export membrane protein SecD [Geobacillus sp. Y412MC61] gi|317112505|gb|ADU94997.1| protein-export membrane protein SecD [Geobacillus sp. Y412MC52] Length = 750 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 182/692 (26%), Positives = 333/692 (48%), Gaps = 33/692 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ ++ ++ + +RI+ +G+SE + G +RI +QL G +D + R++L T AK Sbjct: 54 GDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNRIRVQLAGVKDQNEAREILSTQAK 113 Query: 212 MSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 ++F V + G + D +G + + + Sbjct: 114 LTFRDVNDNVLMDGSDLVQGGAKLSFDENGRPSVALKLKDADKFRQVTEKVYKMGPPNNI 173 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 +V + G + + D + ++A +NQ I GNFT++ A Sbjct: 174 LVIWLDFKEGVDSYRKEAGKA---------DPKFISAASVNQVFNQTDVSIVGNFTVKEA 224 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 LA +L AG+LP++L+ + +VGA G +++ K A + G+ I LFMI Y G+ Sbjct: 225 QQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAGIIGVAAIFLFMIWFYRLPGI 284 Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448 +A ++ + + L L L + +TLP IA ++LG+G+AVD+NI+ ERI+EE + +S+ Sbjct: 285 IAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAVDANIITYERIKEELKLGKSM 344 Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508 + G +++TIFD+N+T +IA VLF +G +V+GFA T+ +SI++S TA+ R Sbjct: 345 LSAFRAGNRGSFATIFDANLTTIIAGAVLFIYGTSSVKGFATTLIISIVVSFLTAVYGTR 404 Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLI-------------PDCIAIQFMRARFWGVGISIL 555 ++ ++ + + + I F++ S Sbjct: 405 LLLGLLVSSRWLDKKPEWFGVKKSEILNIAETTEETEVPTKFDRWDFVKHSQKFFIFSGA 464 Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 +I + LF GLN GIDF G ++ V +++P+D + E L + Sbjct: 465 LTIAGVISLFALGLNLGIDFTSGTRIEVTSSQPIDAKELSGYFERLGHKPEDVVLSGTDG 524 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675 V D ++ +K+ N V P + ++L R ++ V+I Sbjct: 525 KTGVVRLIGVLDKQEIAKLKNELKQAYGSE------PNISTVSPVVGKQLARNALIAVLI 578 Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 S+I +++Y+ IRF+W AL AI L+ D + F++ +E +LT +AAVLT+IGYS+N Sbjct: 579 SSIGIILYVTIRFEWRMALAAIVALLHDAFFIITVFSITRLEVDLTFIAAVLTIIGYSIN 638 Query: 736 DKVVVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 D +V +DR+R M + T + ++++++ +T RSV T + +V+ + ++G Sbjct: 639 DTIVTFDRIRDLMKKRKVKTVDDLKRIVNRALQQTFTRSVNTVLTVLFTVIALLIFGSEA 698 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 I +F + + G+V SS+ IA+ + + Sbjct: 699 IRNFNLALLVGLVCGVYSSLCIASQLWVVWKG 730 Score = 65.1 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 46/400 (11%), Positives = 107/400 (26%), Gaps = 31/400 (7%) Query: 43 RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNK 97 I LGLDL+GG ++ EV D LQ L + G+ + + N+ Sbjct: 31 NIKLGLDLQGGFEVLYEVKPAKKGDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNR 90 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 I + A + + + ++ + +N + ++ ++ + D+ Sbjct: 91 IRVQLAGVKDQNEAREILSTQAKLTFRDVNDNVL------MDGSDLVQGGAKLSFDENGR 144 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 ++ ++ + I + D R +S V Sbjct: 145 PSVALKLKDADKFRQVTEKVYKMGPPNNILVIWLDFKEGVDSYRKEAGKADPKFISAASV 204 Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI-----------SGIHLNGATANFDPKTH 266 ++ F + + + G Sbjct: 205 NQVFNQTDVSIVGNFTVKEAQQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAG 264 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 V F M I + + L + + +P A I G Sbjct: 265 IIGVAAIFLFMIWFYRLPGIIAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAV 324 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A I+ L + +++ G +I+ + ++ ++ Sbjct: 325 DANIITYERIKEELKLGKSMLSAFRAGNRGSFATIFDANLTTIIAGAVLFIY-------- 376 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 + F ++ ++S L A + G+++ Sbjct: 377 -GTSSVKGFATTLIISIVVSFLTAVYGTRLLLGLLVSSRW 415 >gi|30022486|ref|NP_834117.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus cereus ATCC 14579] gi|29898044|gb|AAP11318.1| Protein translocase subunit SecD / Protein translocase subunit SecF [Bacillus cereus ATCC 14579] Length = 754 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 190/695 (27%), Positives = 328/695 (47%), Gaps = 23/695 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARYASIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFTMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + G++V SS+F+A+ I L + + R K R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKKGR 740 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|297529254|ref|YP_003670529.1| protein-export membrane protein SecD [Geobacillus sp. C56-T3] gi|297252506|gb|ADI25952.1| protein-export membrane protein SecD [Geobacillus sp. C56-T3] Length = 750 Score = 321 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 184/692 (26%), Positives = 332/692 (47%), Gaps = 33/692 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ ++ ++ + +RI+ +G+SE + G +RI +QL G +D + RQ+L T AK Sbjct: 54 GDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNRIRVQLAGVKDQNEARQILSTQAK 113 Query: 212 MSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 ++F V + G + D +G + + + Sbjct: 114 LTFRDVNDNVLMDGSDLVQGGAKLSFDENGRPSVALKLKDADKFRQVTEKVYKMGPPNNI 173 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 +V + G + + D + ++A +NQ I GNFT++ A Sbjct: 174 LVIWLDFQEGVDSYRKEAGKA---------DPKFISAASVNQVFNQTDVSIVGNFTVKEA 224 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 LA +L AG+LP++L+ + +VGA G +++ K A + G+ I LFMI Y G+ Sbjct: 225 QQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAGIIGVAAIFLFMIWFYRLPGI 284 Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448 +A ++ + + L L L + +TLP IA ++LG+G+AVD+NI+ ERI+EE + +S+ Sbjct: 285 IAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAVDANIITYERIKEELKLGKSM 344 Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508 + G +++TIFD+N+T +IA VLF +G +V+GFA T+ +SI++S TA+ R Sbjct: 345 LSAFRAGNRGSFATIFDANLTTIIAGAVLFIYGTSSVKGFATTLIISIVVSFLTAVYGTR 404 Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLI-------------PDCIAIQFMRARFWGVGISIL 555 ++ ++ + + + I F++ S Sbjct: 405 LLLGLLVSSRWLDKKPEWFGVKKSEILNIDETTEETEVPTKFDRWDFVKHSQKFFIFSGA 464 Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 +I + LF GLN GIDF G ++ V +++P+D + E L + Sbjct: 465 LTIAGVISLFALGLNLGIDFTSGTRVEVTSSQPIDAKELSGYFERLGYKPEDVVLSGTDG 524 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675 V D ++ +K+ N V P + ++L R ++ V+I Sbjct: 525 KTGVVRLIGVLDKQEIAKLKNELKQAYG------NEPNISTVSPVVGKQLARNALIAVLI 578 Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 S+I +++Y+ IRF+W AL AI L+ D + F+L +E +LT +AAVLT+IGYS+N Sbjct: 579 SSIGIILYVTIRFEWRMALAAIVALLHDAFFIVTVFSLTRLEVDLTFIAAVLTIIGYSIN 638 Query: 736 DKVVVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 D +V +DR+R M + T + ++++++ +T RSV T + +V+ + ++G Sbjct: 639 DTIVTFDRIRDLMKKRKVKTVDDLKHIVNRALQQTFTRSVNTVLTVLFTVIALLIFGSEA 698 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 I +F + + G V SS+ IA+ + + Sbjct: 699 IRNFNLALLVGFVCGVYSSLCIASQLWVVWKG 730 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 46/400 (11%), Positives = 106/400 (26%), Gaps = 31/400 (7%) Query: 43 RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNK 97 I LGLDL+GG ++ EV D LQ L + G+ + + N+ Sbjct: 31 NIKLGLDLQGGFEVLYEVKPAKKGDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNR 90 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 I + A + + ++ + +N + ++ ++ + D+ Sbjct: 91 IRVQLAGVKDQNEARQILSTQAKLTFRDVNDNVL------MDGSDLVQGGAKLSFDENGR 144 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 ++ ++ + I + D R +S V Sbjct: 145 PSVALKLKDADKFRQVTEKVYKMGPPNNILVIWLDFQEGVDSYRKEAGKADPKFISAASV 204 Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI-----------SGIHLNGATANFDPKTH 266 ++ F + + + G Sbjct: 205 NQVFNQTDVSIVGNFTVKEAQQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAG 264 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 V F M I + + L + + +P A I G Sbjct: 265 IIGVAAIFLFMIWFYRLPGIIAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAV 324 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A I+ L + +++ G +I+ + ++ ++ Sbjct: 325 DANIITYERIKEELKLGKSMLSAFRAGNRGSFATIFDANLTTIIAGAVLFIY-------- 376 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 + F ++ ++S L A + G+++ Sbjct: 377 -GTSSVKGFATTLIISIVVSFLTAVYGTRLLLGLLVSSRW 415 >gi|242242909|ref|ZP_04797354.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus epidermidis W23144] gi|242233624|gb|EES35936.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus epidermidis W23144] Length = 763 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 176/697 (25%), Positives = 323/697 (46%), Gaps = 22/697 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G +D ++ R+LL T A Sbjct: 54 GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ + G + + + V Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + ++ + IN + +G +E A + Sbjct: 174 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 233 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AGSLP+ L + +VGA G D++ K A + G+ LI LFM+ Y GLVA Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 293 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 294 IALTAYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R ++ Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ K + D + F++ + +SIL I Sbjct: 414 SLLVSSNFFKKQYWLFGVKKKNRHDINEGKDVHDLKTSYEKLNFVKLAKPLISLSILIVI 473 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + ++ LN GIDF G + + + + + V ++S + Q Sbjct: 474 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSAGLEPDQIQINGSGNKNA 533 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + ++ VK + + V P I +EL + + +I+++I Sbjct: 534 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 587 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND + Sbjct: 588 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRIEVDLTFIAAVLTIVGYSINDTI 647 Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ T + D++++SI +T+ RS+ T + + V+ + + G I Sbjct: 648 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVSILILGAPTIF 707 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +F++ + G++ SSIFIA P+ + + K + Sbjct: 708 NFSLALLIGLLSGVFSSIFIAVPLWGMLKKRQFKKTK 744 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 14/121 (11%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65 + + I + LL ++++ ++LGLDL+GG ++ +VD D Sbjct: 7 IIAFILLVALLFTGMGMTYKNVV---------KNVNLGLDLQGGFEVLFQVDPLNKGDKI 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124 LQ S L + + G+ ++ N+I + A + + ++ Sbjct: 58 DKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117 Query: 125 K 125 Sbjct: 118 D 118 >gi|228910247|ref|ZP_04074065.1| Protein-export membrane protein SecDF [Bacillus thuringiensis IBL 200] gi|228849411|gb|EEM94247.1| Protein-export membrane protein SecDF [Bacillus thuringiensis IBL 200] Length = 754 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 189/694 (27%), Positives = 327/694 (47%), Gaps = 23/694 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVSLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNISTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + G++V SS+F+A+ I L + + R K Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKRG 739 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|218899580|ref|YP_002447991.1| protein-export membrane protein SecDF [Bacillus cereus G9842] gi|218543778|gb|ACK96172.1| protein-export membrane protein SecDF [Bacillus cereus G9842] Length = 754 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 189/694 (27%), Positives = 328/694 (47%), Gaps = 23/694 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + A K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFRAVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V ++ V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVADVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNISTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + G++V SS+F+A+ I L + + R K Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKRG 739 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|56421117|ref|YP_148435.1| bifunctional preprotein translocase subunit SecD/SecF [Geobacillus kaustophilus HTA426] gi|56380959|dbj|BAD76867.1| preprotein translocase subunits D and F [Geobacillus kaustophilus HTA426] Length = 750 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 183/692 (26%), Positives = 333/692 (48%), Gaps = 33/692 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ ++ ++ + +RI+ +G+SE + G +RI +QL G +D + R++L T AK Sbjct: 54 GDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNRIRVQLAGVKDQNEAREILSTQAK 113 Query: 212 MSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 ++F V + G + D +G + + + Sbjct: 114 LTFRDVNDNVLMDGSDLVQGGAKLSFDENGRPSVALKLKDADKFRQVTEKVYKMGPPNNI 173 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 +V + G + + D + ++A +NQ I GNFT++ A Sbjct: 174 LVIWLDFKEGVDSYRKEAGKA---------DPKFISAASVNQVFNQTDVSIVGNFTVKEA 224 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 LA +L AG+LP++L+ + +VGA G +++ K A + G+ I LFMI Y G+ Sbjct: 225 QQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAGIIGVAAIFLFMIWFYRLPGI 284 Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448 +A ++ + + L L L + +TLP IA ++LG+G+AVD+NI+ ERI+EE + +S+ Sbjct: 285 IAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAVDANIITYERIKEELKLGKSM 344 Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508 + G +++TIFD+N+T +IA VLF +G +V+GFA T+ +SI++S TA+ R Sbjct: 345 LSAFRAGNRGSFATIFDANLTTIIAGAVLFIYGTSSVKGFATTLIISIVVSFLTAVYGTR 404 Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLI-------------PDCIAIQFMRARFWGVGISIL 555 ++ ++ + + + I F++ S Sbjct: 405 LLLGLLVSSRWLDKKPEWFGVKKSEILNIAETTEETEVPTKFDRWDFVKHSKKFFIFSGA 464 Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 +I + LF GLN GIDF G ++ V +++P+D + E L + Sbjct: 465 LTIAGVISLFALGLNLGIDFTSGTRVEVTSSQPIDAKELSRYFERLGYKPEDVVLSGTDG 524 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675 V D ++ +K+ N V P + ++L R ++ V+I Sbjct: 525 KTGVVRLIGVLDKQEIAKLKNELKQAYG------NEPNISTVSPVVGKQLARNALIAVLI 578 Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 S+I +++Y+ IRF+W AL AI L+ D + F+L +E +LT +AAVLT+IGYS+N Sbjct: 579 SSIGIILYVTIRFEWRMALAAIVALLHDAFFIITVFSLTRLEVDLTFIAAVLTIIGYSIN 638 Query: 736 DKVVVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 D +V +DR+R M + T + ++++++ +T RSV T + +V+ + ++G Sbjct: 639 DTMVTFDRIRDLMKKRKVKTVDDLKHIVNRALQQTFTRSVNTVLTVLFTVIALLIFGSEA 698 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 I +F + + G+V SS+ IA+ + + Sbjct: 699 IRNFNLALLVGLVCGVYSSLCIASQLWVVWKG 730 Score = 65.5 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 46/400 (11%), Positives = 107/400 (26%), Gaps = 31/400 (7%) Query: 43 RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNK 97 I LGLDL+GG ++ EV D LQ L + G+ + + N+ Sbjct: 31 NIKLGLDLQGGFEVLYEVKPAKKGDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNR 90 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 I + A + + + ++ + +N + ++ ++ + D+ Sbjct: 91 IRVQLAGVKDQNEAREILSTQAKLTFRDVNDNVL------MDGSDLVQGGAKLSFDENGR 144 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 ++ ++ + I + D R +S V Sbjct: 145 PSVALKLKDADKFRQVTEKVYKMGPPNNILVIWLDFKEGVDSYRKEAGKADPKFISAASV 204 Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI-----------SGIHLNGATANFDPKTH 266 ++ F + + + G Sbjct: 205 NQVFNQTDVSIVGNFTVKEAQQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAG 264 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 V F M I + + L + + +P A I G Sbjct: 265 IIGVAAIFLFMIWFYRLPGIIAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAV 324 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A I+ L + +++ G +I+ + ++ ++ Sbjct: 325 DANIITYERIKEELKLGKSMLSAFRAGNRGSFATIFDANLTTIIAGAVLFIY-------- 376 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 + F ++ ++S L A + G+++ Sbjct: 377 -GTSSVKGFATTLIISIVVSFLTAVYGTRLLLGLLVSSRW 415 >gi|326336745|ref|ZP_08202913.1| protein-export membrane protein SecD/SecF [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691215|gb|EGD33186.1| protein-export membrane protein SecD/SecF [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 1037 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 196/848 (23%), Positives = 364/848 (42%), Gaps = 99/848 (11%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123 V+ + + LR + K G+ ++++ N +I++ ++ + + + Q Sbjct: 187 VDESISSAFEVLRKRIDKFGVTNPDIKKLGNSGRISVELPGAKDISRVKNLLQSTAQLEF 246 Query: 124 SKL----------------------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 + K T+ + + + D + + ++ Sbjct: 247 WETFKAADFSSFFSQLNAALQAKETPQTAKSKTEEATSSQATDTLSTLAKSDTLAHNEVD 306 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQ------------------LPGEQDPSRLR 203 + Q+ D I +E + D RL+ Sbjct: 307 SLLNKTAQKKDSITPAEKNPLFDLFQLTQGESSPSIGYFLASDTTKLLSYLHSDDAKRLQ 366 Query: 204 QLLGTTAKMSF--------------------------HKVLPNNSKKGFMFGVRFLRDSD 237 AK F + + + L + Sbjct: 367 PAELKNAKFVFGKPHKLTDLQQLYRMFMSFEYEQAYPAEAKNFKDRLQGLLRKSDLVELY 426 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI---GKPL 294 + ++ ++G + ++P V ++ D GA+ + +T G Sbjct: 427 ALRGNRNNEPPLNGSVVTE-ATQTYDNHNQPCVSMNMDIKGAKIWENLTGKVFTEKGNIA 485 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 V+ + V I G QI+GNFT+ A LA +LRAG LP +IV+ VG Sbjct: 486 IVLDNIVYSAPSVTTGPISGGSTQITGNFTVAEAQDLANVLRAGKLPASADIVQSVIVGP 545 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG ++I G + ++I +M++ YG+ G+ AD ++ N++L +L + + LTL Sbjct: 546 SLGQEAITSGFISFAIAGLIIFFWMLLYYGRVGVFADIALLFNILLMFGILVSINSVLTL 605 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL IG+++D+N+++ ERIREE R + + ++ GFS A +++ D+NIT + Sbjct: 606 PGIAGIVLTIGMSIDANVIIFERIREELRTGKILSQAVHDGFSHAITSVLDANITTFLTG 665 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 VLF FG G ++GFA T+ + I+ ++FTA+ I R ++ + K S + I Sbjct: 666 AVLFVFGSGPIKGFATTLMIGIITTIFTAVFITRLLIDNYVAKGKDLSFSTSFSKN---I 722 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 + I F+ R +S + + S+ +FT G + GIDF GG + PV + Sbjct: 723 LTNVEIDFLSKRKIWYIVSSILILISLGSMFTRGFDQGIDFVGGRSYQIRFKNPVKTEEI 782 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL--------------EMVKK 640 L++ ++G + + F + +Y+ D QT + Sbjct: 783 SRILKAGKLGSVEVKTFGSANQVRISTKYKYNDESTQTDNEIQQILYEDLKPVMGADISY 842 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699 + ++ GP I+ ++ + +I S + + YI +RF+ W F++GA+ Sbjct: 843 DEFMSGEGLGVMKSDKTGPSIAEDIKSSAVWAIIGSLVIIFGYILVRFRKWQFSMGAVAA 902 Query: 700 LILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 L D+T TLG F+L F +E + +AA+LT+IGYS+ND V+++DR+R+ + Sbjct: 903 LTHDVTITLGAFSLLYSVMPFSLEIDQQFIAAILTVIGYSLNDTVIIFDRIREEVGKGGW 962 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 S +++ +I+ TL R++ TS+ +++L + ++GG + F M G+VV SSI Sbjct: 963 KAS---VLNHAISTTLSRTLNTSLTTLLTLLAIFIFGGETLRGFMFAMIIGVVVGTYSSI 1019 Query: 814 FIAAPILL 821 F+A P++ Sbjct: 1020 FVATPLVY 1027 Score = 59.3 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 16/179 (8%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE-LRSFLKKEGIGVFSMRQIQNKIT 99 + GLDL+GG ++ L+V D + G + L + + Q+ I Sbjct: 85 DRELKEGLDLKGGINVTLQVSVHDILRGLADNSKNANFEKALAQADKRLRE--TDQSYID 142 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 L F + L + N + + ++ ++ + + + Sbjct: 143 LFF-------EAFEATGAKLSAADIFGNKILSAQITPQMSNSQVQPII-----RRKVDES 190 Query: 160 IEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 I + E++R+RID+ G++ + S RI ++LPG +D SR++ LL +TA++ F + Sbjct: 191 ISSAFEVLRKRIDKFGVTNPDIKKLGNSGRISVELPGAKDISRVKNLLQSTAQLEFWET 249 >gi|242373937|ref|ZP_04819511.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus epidermidis M23864:W1] gi|242348291|gb|EES39893.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus epidermidis M23864:W1] Length = 763 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 170/696 (24%), Positives = 322/696 (46%), Gaps = 22/696 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ A++ + + + R++ +G+SE IQ +RI +QL G +D ++ R++L T A Sbjct: 54 GEKIDKKALQATSQTLESRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKMLSTQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ + G + + + V Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + ++ + IN +G ++ A + Sbjct: 174 VVWMDFKKGDSYKKEAKKQQEGKEPKYVSAANVDQPINSDSVEISGGFNGKKGVKEAKQI 233 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 + +L AGSLP+ L + +VGA G D++ K A G+ +I LFM+ Y GLVA Sbjct: 234 SELLNAGSLPVDLKEIYSNSVGAQFGQDALNKTIFASFIGVAIIYLFMLGFYRLPGLVAI 293 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R ++ Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDC-------------IAIQFMRARFWGVGISILFSI 558 ++ K + D F++ + +SIL + Sbjct: 414 NLLVSSNFFKKQYWLFGVKKKDRHDMNDGKDVHDLKTSFEKWNFVKLAKPLIALSILIVV 473 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + +L LN GIDF G + + A +P+ + V ++ + + Q Sbjct: 474 VGLVILAVFKLNLGIDFSSGTRADINAKQPLTQAKVEKAVKDVGLEPDQIQINGSSNKGA 533 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + ++ + +K + + V P I +EL + I +I++++ Sbjct: 534 TVQFKKDLSRAEDNKLSDKIKSEFGDT------PQINTVSPLIGQELAKNAITALILASL 587 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L A+ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND + Sbjct: 588 GIIIYVSLRFEWRMGLSAVLALLHDVFIIVAVFSLFRIEVDLTFIAAVLTIVGYSINDTI 647 Query: 739 VVYDRMRKNMKLYTTSISFRDL---IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ S + +++SI +T+ RS+ T + + V+ + ++G I Sbjct: 648 VTFDRVRENLHKLKVITSPEQIDDMVNRSIRQTMTRSINTVLTVVVVVVAILIFGAPTIF 707 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +F++ + G++ SS+FIA P+ + + K + Sbjct: 708 NFSLALLIGLISGVFSSVFIAVPLWGIMKKRQLKKS 743 Score = 68.2 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 44/394 (11%), Positives = 103/394 (26%), Gaps = 28/394 (7%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + LV ++ + A ++++ ++LGLDL+GG ++ +V Sbjct: 1 MKKSSRLVAFILLVVLL---FAGMGLTYKNVV---------KNVNLGLDLQGGFEVLFQV 48 Query: 61 DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKV 115 D + LQ S L S + G+ ++ N+I + A + + + Sbjct: 49 DPLHKGEKIDKKALQATSQTLESRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKML 108 Query: 116 TLFLQGVNSKLNVDPKKNL--LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 + + + + K+ + + ++ ++ + + Sbjct: 109 STQANLTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKK 168 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 + +Q + + + GF Sbjct: 169 RDNVMVVWMDFKKGDSYKKEAKKQQEGKEPKYVSAANVDQPINSDSVEISGGFNGKKGVK 228 Query: 234 RDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284 ++ L + + G N V I + M Sbjct: 229 EAKQISELLNAGSLPVDLKEIYSNSVGAQFGQDALNKTIFASFIGVAIIYLFMLGFYRLP 288 Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344 I + L +P A + G A I+ L I Sbjct: 289 GLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGR 348 Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378 + + + +I+ V ++ F Sbjct: 349 TLKQAYSKANKSSFLTIFDSNLTTVIAAAVLFFF 382 >gi|57867140|ref|YP_188776.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus epidermidis RP62A] gi|251811042|ref|ZP_04825515.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus epidermidis BCM-HMP0060] gi|57637798|gb|AAW54586.1| protein-export membrane protein SecDF [Staphylococcus epidermidis RP62A] gi|251805418|gb|EES58075.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus epidermidis BCM-HMP0060] Length = 763 Score = 320 bits (819), Expect = 7e-85, Method: Composition-based stats. Identities = 175/697 (25%), Positives = 324/697 (46%), Gaps = 22/697 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G +D ++ R+LL T A Sbjct: 54 GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ + G + + + V Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + ++ + IN + +G +E A + Sbjct: 174 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 233 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AGSLP+ L + +VGA G D++ K A + G+ LI LFM+ Y GLVA Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 293 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R ++ Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ K + D + F++ + +SIL I Sbjct: 414 SLLVSSNFFKKQYWLFGVKKKDRHDINEGKDVHDLKTSYERLNFVKLAKPLISLSILIVI 473 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + ++ LN GIDF G + + + + + V ++S+ + Q Sbjct: 474 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSVGLEPDQIQINGSGNKNA 533 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + ++ VK + + V P I +EL + + +I+++I Sbjct: 534 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 587 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L ++ L+ D+ + F+LF +E +LT +AAVLT++GYS+ND + Sbjct: 588 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRLEVDLTFIAAVLTIVGYSINDTI 647 Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ T + D++++SI +T+ RS+ T + + V+ + + G I Sbjct: 648 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILILGAPTIF 707 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +F++ + G++ SSIFIA P+ + + K + Sbjct: 708 NFSLALLIGLLSGVFSSIFIAVPLWGMLKKRQFKKTK 744 Score = 69.3 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 14/121 (11%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65 + + I I LL ++++ ++LGLDL+GG ++ +VD D Sbjct: 7 IIAFILLIALLFTGMGMTYKNVV---------KNVNLGLDLQGGFEVLFQVDPLNKGDKI 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124 LQ S L + + G+ ++ N+I + A + + ++ Sbjct: 58 DKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117 Query: 125 K 125 Sbjct: 118 D 118 >gi|304382430|ref|ZP_07364929.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella marshii DSM 16973] gi|304336438|gb|EFM02675.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella marshii DSM 16973] Length = 996 Score = 320 bits (819), Expect = 7e-85, Method: Composition-based stats. Identities = 218/831 (26%), Positives = 381/831 (45%), Gaps = 66/831 (7%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122 V + +RS + K G+ ++++ + +I + R E I + Sbjct: 166 VEAAIDNSYTVVRSRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERIRKLLQGSANLE 225 Query: 123 NSKLNVDPK-----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + + L E S ++ + A + + + + + Sbjct: 226 FWETYNSQEVMPYLTQLDQRMANGETSTDATKADSVSKPKDATQTTAKPAAKFQIKKDTK 285 Query: 178 ESTIQRLGSHRILIQ-----------------------LPGEQDPSRLRQLLGTTAKMSF 214 + + +D + + +++ + Sbjct: 286 TADVAAKSFDAQQEAAKKQHPLLSIFQPTGGQSLSLVGYAHVRDTAAIDKIIHSEIAKEI 345 Query: 215 HKVLPNNSKKGFMFGVRFLRDSD----GNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 ++ + + G + A FD +P V Sbjct: 346 IPSDMKLLWSAKPADGLNNKNVYELHAIKVTSATGRAPLEGDVVTDAKDEFDQMG-RPCV 404 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 +S + GAR + ++T++NIGK +A+VLDG V +AP ++ I G +QISGNFTIE Sbjct: 405 SMSMNSEGARLWAQLTKNNIGKAIAIVLDGVVYSAPRVSNEIDGGNSQISGNFTIEDTKD 464 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389 L L++G +P IV+E VG LG+ SI +G + V ++++++MIV+Y G++ Sbjct: 465 LTNTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIVSFVIAFIILMVYMIVMYNFIPGMM 524 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +N+ TL +L+ A LT+P IAGIVL +G+AVD+N+L+ ER +EE ++ + Sbjct: 525 ANIALLVNLFFTLGILTSFQAALTMPGIAGIVLTLGMAVDANVLIYERTKEEMKRGLDIK 584 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 +L G+S A+S IFDSN+T+++ ++L+ FG G +RGFA T+ + I+ S FTA+ + R Sbjct: 585 QALAAGYSNAFSAIFDSNLTSILTGIILYVFGTGPIRGFATTLIIGIVCSFFTAVYLTRL 644 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + ++ K +++ L+ + + FM+A + + I F +GL Sbjct: 645 VYENRMKKDKWRNLTFTTPISKNLLQN-VHFDFMKASKTSFLFCAVAIVIFIGSFFVNGL 703 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + IDF GG V +PV+ VR+ L G + G +R+ Sbjct: 704 SKSIDFTGGRNYVVKFEKPVEPEQVRAALAKAFPGANTGALALGTDGKTIRISTNYKIES 763 Query: 630 AQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKG 669 V + + + +I +I ++ VGP +++++ Sbjct: 764 NSPTVDDEAETILFHALSKAGMVTQKSVEAFKDPDIRKGGSIISSTKVGPSVAKDITYGA 823 Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTA 722 IV V+++ IA+ IYI IRF+ F+LG+ L +D T +G ++L F +E + T Sbjct: 824 IVSVVLAIIAIFIYILIRFRNVSFSLGSTIALAIDATVVIGLYSLLYKVVPFSLEIDQTF 883 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 + A+LT+IGYS+NDKVVV+DR+R+N+ L+ R L + SIN+TL R+V TS + I Sbjct: 884 IGAILTVIGYSINDKVVVFDRIRENLNLH-KKQGHRSLFNDSINQTLARTVNTSFSTLIV 942 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 +L + GG I SF+ M G+V SSIFIAAPI + + Sbjct: 943 LLSIFFLGGDSIRSFSFAMILGVVFGTISSIFIAAPIAYLTMSKKNDKEEL 993 Score = 67.0 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 94/254 (37%), Gaps = 38/254 (14%) Query: 1 MRNNPWLVILYSMICCIGLLIALP----NFLPQSMLDRFPSAMPK--------------- 41 M+N +++ ++ + N+ + + Sbjct: 1 MQNKGIVIVTAVLLTLASIFYLSFSVATNYYDKEAEKIKDPIAQQDYKDSVKYLGIYSYQ 60 Query: 42 ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +I LGLDL+GG +++LE+ D + +D +F+K Q+ Sbjct: 61 KCLETQIGLGLDLKGGMNVILEISVPDVIEVLADHKTD--MAFVKSMDEAKKEEETSQSD 118 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 F + ++ K + +++ E + + + Sbjct: 119 FISLFIKYYHQNAPGHRLAEIFAT------QQLKGKVTTQSSDSE-----VEKALRSEVE 167 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 AI+ S ++R RID+ G+ + IQ+ RI++++PG ++P R+R+LL +A + F Sbjct: 168 AAIDNSYTVVRSRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERIRKLLQGSANLEFW 227 Query: 216 KVLPNNSKKGFMFG 229 + + ++ Sbjct: 228 ETYNSQEVMPYLTQ 241 >gi|229158026|ref|ZP_04286097.1| Protein-export membrane protein SecDF [Bacillus cereus ATCC 4342] gi|228625479|gb|EEK82235.1| Protein-export membrane protein SecDF [Bacillus cereus ATCC 4342] Length = 754 Score = 320 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDHSALVSTVGALENRVNALGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ +I LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGTSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 60.9 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEVLYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D + L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDHSALVSTVGALENRVNALGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|328950385|ref|YP_004367720.1| protein-export membrane protein SecD [Marinithermus hydrothermalis DSM 14884] gi|328450709|gb|AEB11610.1| protein-export membrane protein SecD [Marinithermus hydrothermalis DSM 14884] Length = 739 Score = 320 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 213/684 (31%), Positives = 370/684 (54%), Gaps = 26/684 (3%) Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLRQLLGTTAKMSFHKV 217 +E+ +I RI+ +G++E IQ G++R+LI+LP ++D + +L+G A + F V Sbjct: 59 LERVRTVIENRINALGVAEPLIQIQGTNRVLIELPGLSQEDQDKALKLIGQRAVLEFRVV 118 Query: 218 LP----------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 N + R ++ + ++G L A F + Sbjct: 119 KEDATGLTVAQINEQLRRNPNLDRSELEARLMKLEDLGPPLLTGADLETANTVF-DSFGR 177 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 P V ++F GA++F EVTR N+G+ LA+VLDGRV +APVI QAI G+A I G ++E Sbjct: 178 PQVSMTFTPEGAKKFAEVTRANVGRRLAIVLDGRVYSAPVIRQAILDGQAVIDGLGSLEE 237 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KW 386 A +A +LR+GSLP+ +++ E R +G LG+D+I G A V G +LI + + + YG + Sbjct: 238 ASEIALVLRSGSLPVAVHVEELRAIGPTLGADAIRSGVIASVVGGLLIFVVIFLYYGPWF 297 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 GLVA + +L L +LS LGATLTLP IAG++L IG AVD N+L ERI+EE R ++ Sbjct: 298 GLVASLGLIYTAVLVLGMLSGLGATLTLPGIAGLILTIGAAVDGNVLSFERIKEELRYDK 357 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 + ++ GF + TI D+NI+ L+A L+ + G VRGFA+ + + I+ ++F+ + Sbjct: 358 KLRQAIPDGFRHSIVTILDANISTLLAAAALYQYATGPVRGFAVMLSIGIIAAVFSNLVF 417 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566 R ++ I + +++ I F++ +++ ++ + ++FT Sbjct: 418 SRYLLERIAQRGEVR---------LPYWIWGTRIPFLKHARVITRATLVLALVAAGVVFT 468 Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN--FDGEKNFLVRLQYQ 624 G NYGIDF GG + V + VR+ L+ I +S ++ ++ + + Sbjct: 469 KGFNYGIDFTGGTAYLIRTPSTVGVEDVRAFLDEAGIEGVSGKDAVITAVQSPISDAREY 528 Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 ++ + + + + + +E VGP + EL R ++ V+ +LIY+ Sbjct: 529 SVRVGVLSQEARLQLAGLFQEKLNAEVLQSETVGPAVGAELRRNTVLAVLAGLGLILIYM 588 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 RF W F + +I + D+ T G F+L G+EF + VAA+LT+IGYS+ND +++ DR+ Sbjct: 589 AFRFDWVFGVASIIAVGHDVAITAGVFSLLGLEFTIPIVAALLTIIGYSINDSIILSDRI 648 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+N+++ +S+++L+D +IN+TL R+V TS + + + GG V+ F++ + G Sbjct: 649 RENLRVM-RGVSYQELVDTAINQTLSRTVMTSFTTLLPLFSLFFIGGPVLRDFSLAILVG 707 Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828 I V SSI++ + ++++ Sbjct: 708 IFVGTYSSIYVVSALVVWWKTREQ 731 Score = 70.1 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 14/144 (9%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR N IL + LL + P ++ LGLDL+GG +VL+ Sbjct: 1 MRRNTVTGILLLGVFLAALLGIWKPWAPAEP-----------KVKLGLDLKGGLRIVLQT 49 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFAD--SRFKENIADKVTL 117 D+ + L+ + + + G+ ++ N++ + ++ + Sbjct: 50 DDPEPDPDDLERVRTVIENRINALGVAEPLIQIQGTNRVLIELPGLSQEDQDKALKLIGQ 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEK 141 + D + E+ Sbjct: 110 RAVLEFRVVKEDATGLTVAQINEQ 133 >gi|42783542|ref|NP_980789.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus cereus ATCC 10987] gi|42739471|gb|AAS43397.1| protein-export membrane protein SecDF [Bacillus cereus ATCC 10987] Length = 754 Score = 320 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 191/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + S++ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNVGHKFLIFSLVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + VL + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVLALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|27468238|ref|NP_764875.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus epidermidis ATCC 12228] gi|27315784|gb|AAO04919.1|AE016748_153 protein-export membrane protein SecDF [Staphylococcus epidermidis ATCC 12228] Length = 763 Score = 320 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 175/697 (25%), Positives = 324/697 (46%), Gaps = 22/697 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G +D ++ R+LL T A Sbjct: 54 GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ + G + + + V Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + ++ + IN + +G +E A + Sbjct: 174 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 233 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AGSLP+ L + +VGA G D++ K A + G+ LI LFM+ Y GLVA Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 293 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R ++ Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ K + D + F++ + +SIL I Sbjct: 414 SLLVSSNFFKKQYWLFGVKKKDRHDINESKDVHDLKTSYERLNFVKLAKPLISLSILIVI 473 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + ++ LN GIDF G + + + + + V ++S+ + Q Sbjct: 474 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSVGLEPDQIQINGSGNKNA 533 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + ++ VK + + V P I +EL + + +I+++I Sbjct: 534 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 587 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L ++ L+ D+ + F+LF +E +LT +AAVLT++GYS+ND + Sbjct: 588 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRLEVDLTFIAAVLTIVGYSINDTI 647 Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ T + D++++SI +T+ RS+ T + + V+ + + G I Sbjct: 648 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILILGAPTIF 707 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +F++ + G++ SSIFIA P+ + + K + Sbjct: 708 NFSLALLIGLLSGVFSSIFIAVPLWGMLKKRQFKKTK 744 Score = 69.3 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 14/121 (11%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65 + + I I LL ++++ ++LGLDL+GG ++ +VD D Sbjct: 7 IIAFILLIALLFTGMGMTYKNVV---------KNVNLGLDLQGGFEVLFQVDPLNKGDKI 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124 LQ S L + + G+ ++ N+I + A + + ++ Sbjct: 58 DKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117 Query: 125 K 125 Sbjct: 118 D 118 >gi|228987663|ref|ZP_04147776.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772066|gb|EEM20519.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 754 Score = 320 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIEVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|293366406|ref|ZP_06613085.1| protein-export membrane protein SecDF [Staphylococcus epidermidis M23864:W2(grey)] gi|291319531|gb|EFE59898.1| protein-export membrane protein SecDF [Staphylococcus epidermidis M23864:W2(grey)] gi|329733750|gb|EGG70076.1| export membrane protein SecD [Staphylococcus epidermidis VCU045] Length = 763 Score = 320 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 175/697 (25%), Positives = 324/697 (46%), Gaps = 22/697 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G +D ++ R+LL T A Sbjct: 54 GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ + G + + + V Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + ++ + IN + +G +E A + Sbjct: 174 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 233 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AGSLP+ L + +VGA G D++ K A + G+ LI LFM+ Y GLVA Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 293 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R ++ Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ K + D + F++ + +SIL I Sbjct: 414 SLLVSSNFFKKQYWLFGVKKMDRHDINEGKDVHDLKTSYERLNFVKLAKPLISLSILIVI 473 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + ++ LN GIDF G + + + + + V ++S+ + Q Sbjct: 474 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSVGLEPDQIQINGSGNKNA 533 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + ++ VK + + V P I +EL + + +I+++I Sbjct: 534 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 587 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L ++ L+ D+ + F+LF +E +LT +AAVLT++GYS+ND + Sbjct: 588 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRLEVDLTFIAAVLTIVGYSINDTI 647 Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ T + D++++SI +T+ RS+ T + + V+ + + G I Sbjct: 648 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILILGAPTIF 707 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +F++ + G++ SSIFIA P+ + + K + Sbjct: 708 NFSLALLIGLLSGVFSSIFIAVPLWGMLKKRQFKKTK 744 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 14/121 (11%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65 + + I I LL ++++ ++LGLDL+GG ++ +VD D Sbjct: 7 IIAFILLIALLFTGMGMTYKNVV---------KNVNLGLDLQGGFEVLFQVDPLNKGDKI 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124 LQ S L + + G+ ++ N+I + A + + ++ Sbjct: 58 DKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117 Query: 125 K 125 Sbjct: 118 D 118 >gi|206975966|ref|ZP_03236876.1| protein-export membrane protein SecDF [Bacillus cereus H3081.97] gi|217961902|ref|YP_002340472.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus cereus AH187] gi|229141150|ref|ZP_04269691.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST26] gi|206745718|gb|EDZ57115.1| protein-export membrane protein SecDF [Bacillus cereus H3081.97] gi|217064404|gb|ACJ78654.1| protein-export membrane protein SecDF [Bacillus cereus AH187] gi|228642313|gb|EEK98603.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST26] Length = 754 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + S++ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNVGHKFLIFSLVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|47566600|ref|ZP_00237422.1| protein-export membrane protein secDF [Bacillus cereus G9241] gi|47556630|gb|EAL14962.1| protein-export membrane protein secDF [Bacillus cereus G9241] Length = 754 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 191/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIEVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|229105049|ref|ZP_04235701.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-28] gi|228678359|gb|EEL32584.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-28] Length = 754 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 188/690 (27%), Positives = 325/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDHSALVSTVGALENRVNALGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFRDVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKEL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ +I LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGVAIIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT + A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTIAAAGVLFVYGTSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ SI I Sbjct: 410 SLLVKSRYFDKKPSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFFLFSIAVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + V ++ V + + L I + Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQAVTVADVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF+ +A+ A+ L+ D + F+LF IE +LT +AAVLT+IGYS+ND +V Sbjct: 586 VLYVSIRFRLTYAVSAVIALLHDAFVMIVVFSLFRIEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDLKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ + G+VV SSIF+A+ I L + + R Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRR 735 >gi|222097856|ref|YP_002531913.1| bifunctional preprotein translocase subunit secd/secf [Bacillus cereus Q1] gi|229198539|ref|ZP_04325242.1| Protein-export membrane protein SecDF [Bacillus cereus m1293] gi|221241914|gb|ACM14624.1| protein-export membrane protein secdf [Bacillus cereus Q1] gi|228584924|gb|EEK43039.1| Protein-export membrane protein SecDF [Bacillus cereus m1293] Length = 754 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 189/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|282864623|ref|ZP_06273678.1| protein-export membrane protein SecD [Streptomyces sp. ACTE] gi|282560562|gb|EFB66109.1| protein-export membrane protein SecD [Streptomyces sp. ACTE] Length = 775 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 206/720 (28%), Positives = 349/720 (48%), Gaps = 37/720 (5%) Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 + + ++ + ++++E++RQR+D +G++E T+ R G RI+++LP Q Sbjct: 35 QGGTRMVLQAKDSDTATADRDSTDRTLEVLRQRVDSLGVAEPTLTRSGEDRIIVELPDVQ 94 Query: 198 DPSRLRQLLGTTAKMSFHKV---------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248 DP + ++LG TA++SFH V +G + L V Sbjct: 95 DPRQAAEVLGKTAQLSFHPVQGPGTEPAADDKEKDEGEGSKAGPTLPDEQGDLLALGPVR 154 Query: 249 ISGIHLNGATANFD-PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD-------- 299 +SG + ATA+FD + V + F + +++ +T + P+ Sbjct: 155 LSGAGVKDATASFDAQQGTGWSVSLDFHKDAGKKWTGLTGEAACNPVQDERRRVAIVLDG 214 Query: 300 -----GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 +V + N +PSG QI+G+F + A LA +++ GSLP+ + IVE+R VG Sbjct: 215 KVISSPQVSPSVGCNVGLPSGSTQITGSFGADEARDLALLIKGGSLPVPVEIVEQRIVGP 274 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG+ +I A + G LF+ V+Y +G +A ++ +++ A L +LG TLTL Sbjct: 275 TLGAAAIDASARAALIGAAATALFITVMYRLFGALAALALAAYGVISYAALVVLGVTLTL 334 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 P +AG VL IG+AVD+N+LV ER REE R N+++ +L GF A+S + DSN+T LI Sbjct: 335 PGLAGFVLAIGMAVDANVLVFERAREECADRPNRTLLSALTAGFRGAWSAVADSNVTTLI 394 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPL 528 A +LFF G G V+GF +T+ + ++ SMF+A+ I RA+ + + I Sbjct: 395 AAGLLFFLGSGPVKGFGVTLAIGVIASMFSALVIARALTEIAAGSRFVSGYRGVNGIARP 454 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + Q R+ + S + ++ + G+N G++F GG + +RP Sbjct: 455 GAVRTRLNARDPQLFRSPRRWLAFSAVLVAVAVAGIVVRGVNLGVEFTGGRLVEYSTSRP 514 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 VD+ R L + GD V+ + E Sbjct: 515 VDVEKARDALSTAGFGDAEVTTAGDGD-------LSVRTGKLDDDGERAVRAALAEEGGE 567 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +T E++GP + EL R ++ + ++ L Y+ RF+W FA+ ++ L+ D+ + Sbjct: 568 ATKIRDELIGPSLGDELRRNALIALGVAVFVQLAYLAARFRWTFAVASVGALVHDVIILV 627 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G FA G + +AA+LT+IGYSVND VVV+DR+R+ + + D+ ++++ +T Sbjct: 628 GAFAWLGRTVDGIFLAALLTVIGYSVNDSVVVFDRVRE-LWAKSRRTPLPDIANRAVLQT 686 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + R+V T M A + +AV GG + FA+ + GI V SS+ A P L + Sbjct: 687 VPRTVNTGMGALFILAALAVLGGDSLADFALALLIGICVGTYSSVMTAVPGALLLETSSK 746 >gi|52141095|ref|YP_085734.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus cereus E33L] gi|51974564|gb|AAU16114.1| protein-export membrane protein, subunit D and subunit F [Bacillus cereus E33L] Length = 754 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 188/690 (27%), Positives = 325/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGIDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G++V SS+F+A+ I L + + R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|229093482|ref|ZP_04224585.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-42] gi|228689953|gb|EEL43757.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-42] Length = 754 Score = 319 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y G+VA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGIVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|228917047|ref|ZP_04080607.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842654|gb|EEM87742.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 754 Score = 319 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 189/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|229175085|ref|ZP_04302602.1| Protein-export membrane protein SecDF [Bacillus cereus MM3] gi|228608381|gb|EEK65686.1| Protein-export membrane protein SecDF [Bacillus cereus MM3] Length = 754 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 188/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSADKFREVTDKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y G+VA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGIVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFVTNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPAYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|30264481|ref|NP_846858.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus anthracis str. Ames] gi|47529939|ref|YP_021288.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus anthracis str. 'Ames Ancestor'] gi|49187301|ref|YP_030553.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus anthracis str. Sterne] gi|65321777|ref|ZP_00394736.1| COG0342: Preprotein translocase subunit SecD [Bacillus anthracis str. A2012] gi|165871968|ref|ZP_02216609.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0488] gi|167636504|ref|ZP_02394801.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0442] gi|167640701|ref|ZP_02398961.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0193] gi|170688674|ref|ZP_02879879.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0465] gi|170709261|ref|ZP_02899681.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0389] gi|177653983|ref|ZP_02936024.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0174] gi|190567058|ref|ZP_03019974.1| protein-export membrane protein SecDF [Bacillus anthracis Tsiankovskii-I] gi|227817189|ref|YP_002817198.1| protein-export membrane protein SecDF [Bacillus anthracis str. CDC 684] gi|229601600|ref|YP_002868697.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0248] gi|254684166|ref|ZP_05148026.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus anthracis str. CNEVA-9066] gi|254724663|ref|ZP_05186446.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus anthracis str. A1055] gi|254736513|ref|ZP_05194219.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus anthracis str. Western North America USA6153] gi|254741551|ref|ZP_05199238.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus anthracis str. Kruger B] gi|254751350|ref|ZP_05203387.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus anthracis str. Vollum] gi|254757682|ref|ZP_05209709.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus anthracis str. Australia 94] gi|30259139|gb|AAP28344.1| protein-export membrane protein SecDF [Bacillus anthracis str. Ames] gi|47505087|gb|AAT33763.1| protein-export membrane protein SecDF [Bacillus anthracis str. 'Ames Ancestor'] gi|49181228|gb|AAT56604.1| protein-export membrane protein SecDF [Bacillus anthracis str. Sterne] gi|164712258|gb|EDR17794.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0488] gi|167511273|gb|EDR86659.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0193] gi|167528097|gb|EDR90894.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0442] gi|170125837|gb|EDS94744.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0389] gi|170667360|gb|EDT18118.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0465] gi|172081038|gb|EDT66116.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0174] gi|190562049|gb|EDV16018.1| protein-export membrane protein SecDF [Bacillus anthracis Tsiankovskii-I] gi|227005997|gb|ACP15740.1| protein-export membrane protein SecDF [Bacillus anthracis str. CDC 684] gi|229266008|gb|ACQ47645.1| protein-export membrane protein SecDF [Bacillus anthracis str. A0248] Length = 754 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|118479568|ref|YP_896719.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus thuringiensis str. Al Hakam] gi|196044831|ref|ZP_03112065.1| protein-export membrane protein SecDF [Bacillus cereus 03BB108] gi|225866392|ref|YP_002751770.1| protein-export membrane protein SecDF [Bacillus cereus 03BB102] gi|229186650|ref|ZP_04313811.1| Protein-export membrane protein SecDF [Bacillus cereus BGSC 6E1] gi|118418793|gb|ABK87212.1| protein translocase subunit secD [Bacillus thuringiensis str. Al Hakam] gi|196024319|gb|EDX62992.1| protein-export membrane protein SecDF [Bacillus cereus 03BB108] gi|225787197|gb|ACO27414.1| protein-export membrane protein SecDF [Bacillus cereus 03BB102] gi|228596909|gb|EEK54568.1| Protein-export membrane protein SecDF [Bacillus cereus BGSC 6E1] Length = 754 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 187/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI +FM+V Y G+VA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFVFMLVFYRLPGIVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G++V SS+F+A+ I L + + R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|228473366|ref|ZP_04058120.1| bifunctional preprotein translocase subunit SecD/SecF [Capnocytophaga gingivalis ATCC 33624] gi|228275268|gb|EEK14066.1| bifunctional preprotein translocase subunit SecD/SecF [Capnocytophaga gingivalis ATCC 33624] Length = 1048 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 198/746 (26%), Positives = 345/746 (46%), Gaps = 34/746 (4%) Query: 109 ENIADKVTLFLQGVNSKLNVDPKK--NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166 + + Q +S +L T + + D + +S E Sbjct: 303 NEVDSLLNKTAQKKDSLAPAQKNPLFDLFQFTNGENSPSIAYFLAADTTKLLSYLKSDEA 362 Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226 R + ++ ++ + L QL P Q AK F + L + ++ Sbjct: 363 KRLQPAELKYAKFVFGKPHKLTDLQQLYRMFWPYEAEQADPANAK-KFKERLQSLLRRSD 421 Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 + + LR + N+ + V + + E + F Sbjct: 422 LVELYALRGNRTNEPPLTGSVVTEAVQTYDNHNQPCVSMNMNREGAKLWENLTGKVFTER 481 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + V +T+ I+ G QI+GNFT+ A LA +LRAG LP +I Sbjct: 482 GNIAITLDNTVYSAPTVTSGPIS----GGSTQITGNFTVAEAQDLANVLRAGKLPASADI 537 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 V+ VG LG ++I G + ++I L+M+V YG+ G+ AD ++ N++L +L Sbjct: 538 VQSVIVGPSLGQEAITSGFISFAIAGLIIFLWMLVYYGRAGIFADIALVFNILLMFGILV 597 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 + + LTLP IAGIVL IG+++D+N+++ ERIREE R +S+ S+ GFS A +++ D+ Sbjct: 598 SINSVLTLPGIAGIVLTIGMSIDANVIIFERIREELRNGKSLTQSIHDGFSHAITSVLDA 657 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 NIT + VLF FG G ++GFA T+ + I+ ++FTA+ I R ++ + + K S + Sbjct: 658 NITTFLTGAVLFVFGSGPIKGFATTLMIGIVTTIFTAVFITRLLIDWYVAKGKELSFTTS 717 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 I I F+ R IS + + S+ +FT G + GIDF GG + Sbjct: 718 ISKN---ILVNPNIDFLSKRKVWYSISAIMILISLGSMFTRGFDQGIDFVGGRSYQIRFK 774 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL----------- 635 PV + S L++ ++G + + F + +Y+ D QT Sbjct: 775 NPVKTEEIASLLKAGKLGSVEVKTFGAANQVRISTKYKYNDESTQTDNEIQEILYNDLQP 834 Query: 636 ---EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691 E + + + ++ GP I+ ++ + +I S I + YI +RF+ W Sbjct: 835 VMGEKISYEEFMSGEGLGVMKSDKTGPSIAEDIKSSAVWAIIGSLIIIFGYILVRFRKWQ 894 Query: 692 FALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 F++GA+ L D+ TLG F+L F +E + +AA+LT+IGYS+ND V+++DR+R Sbjct: 895 FSMGAVAALTHDVIITLGAFSLLYSVMPFSLEIDQQFIAAILTVIGYSLNDTVIIFDRIR 954 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 + + L S + ++ +++ TL R++ TS+ +++L + ++GG + F M G+ Sbjct: 955 EEIGLKGWSANT---LNHAVSTTLSRTLNTSLTTLLTLLAIFIFGGETLRGFMFAMIIGV 1011 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831 VV SSIF+A P++ R + A Sbjct: 1012 VVGTYSSIFVATPLVYDTSKNRKEEA 1037 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 16/179 (8%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKIT 99 + GLDL+GG ++ L++ D + + + + L + + Q+ I Sbjct: 85 DRELKEGLDLKGGINVTLQISVHDILRSLAENSKNADFEKALDQADKRLRE--TDQSYID 142 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 L F D L + N + + ++ +L + I + Sbjct: 143 LFF-------EAFDATGAKLSAPDIFGNKTLSAQITPQMSNSQVQPIL-----RKKIDES 190 Query: 160 IEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 I+ + E++R+RID+ G++ + S RI ++LPG +D SR++ LL +TA++ F + Sbjct: 191 IDSAFEVLRKRIDKFGVTNPDIKKLGNSGRISVELPGAKDISRVKNLLQSTAQLEFWET 249 >gi|169829367|ref|YP_001699525.1| bifunctional preprotein translocase subunit SecD/SecF [Lysinibacillus sphaericus C3-41] gi|168993855|gb|ACA41395.1| Protein-export membrane protein [Lysinibacillus sphaericus C3-41] Length = 741 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 186/696 (26%), Positives = 332/696 (47%), Gaps = 27/696 (3%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 ++ + + + R++ IG+SE +IQ G +RI +QL G +D R+LL T+A Sbjct: 39 AGQKITPEVVAATATALGNRVNAIGVSEPSIQVEGENRIRVQLAGVEDQESARKLLSTSA 98 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 ++F V N G +G + + F T K Sbjct: 99 NLTFRDVDDNLLLDGNDLK------ENGASASFDQQNRPIVSLKLKDAGKFADVTSKIAA 152 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 + + + K + R +A ++Q + + ISG+F+++ Sbjct: 153 KPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTLNTTDVMISGSFSVDETKN 212 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 L+ +L AG+LP+KL+ + +VGA G +++ A + G+V+I LFM+ Y G+++ Sbjct: 213 LSGILNAGALPVKLDEIYSTSVGAQFGDEALKSTIFAGIVGVVIIFLFMLFYYRLPGVIS 272 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 ++ + L L + + A LTLP IA IVLGIG+AVD+NIL ERIREE R S Sbjct: 273 IITLVVFTFLVLVVFDWINAVLTLPGIAAIVLGIGMAVDANILAAERIREELRVGYSAKQ 332 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 + +G ++ S I D+ +T L+A +LF+FG +V+GFA T+ +SIL+S TA+ R + Sbjct: 333 AFQIGSKQSLSAIVDAQLTTLLAAGILFYFGTSSVKGFATTLIISILLSFLTAVWGSRVL 392 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAI------------QFMRARFWGVGISILFSI 558 + F++ + +++ I F+ R S+ + Sbjct: 393 LGFLVNSGYFNNPAWYGIAKSKQHSLEENIGTLDLTTKFDRFDFVHNRKKFYTFSLAILV 452 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + ++ LN GIDF G ++ + A + + + ++S+ + Sbjct: 453 AGLVVIGIFRLNLGIDFSSGTRIQIEAEQTLTQEEMAKFVDSIGFPSEDIVLSGEKSTSA 512 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V +++K + V P + +EL++ I + ++A+ Sbjct: 513 VIRYKSDLSQA------DILKFQKETTDKYGHKPTVSTVSPTVGKELVKNAIKALSLAAL 566 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF+W +GAI +L+ D+ + F+ +E ++T +AAVLT++GYS+ND + Sbjct: 567 GIIIYVAIRFEWRMGIGAIVSLLHDVFLIVAVFSFMRLEVDITFIAAVLTIVGYSINDTI 626 Query: 739 VVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DRMR+N+ Y T D+++KS+ +T+GRSV T + I V+ + ++G I Sbjct: 627 VTFDRMRENLDRYDTINDRELLADIVNKSLRQTMGRSVNTVLTVIIVVIALLIFGAPSIQ 686 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +F+I + G++ SSI IAA I + K + Sbjct: 687 NFSIALLIGLITGMYSSICIAAQIWYSLKIREMKKS 722 Score = 71.6 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 80/696 (11%), Positives = 178/696 (25%), Gaps = 34/696 (4%) Query: 42 NRISLGLDLRGGSHLVLEVD----EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 I LGLDL+GG ++ EV+ + + L + + G+ S++ N Sbjct: 16 KDIKLGLDLQGGFEVLYEVNELKAGQKITPEVVAATATALGNRVNAIGVSEPSIQVEGEN 75 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A +E+ ++ ++ + + E S Q N V Sbjct: 76 RIRVQLAGVEDQESARKLLSTSANLTFRDVDDNLLLDG-NDLKENGASASFDQQNRPIVS 134 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + + + + + + + + + A +S Sbjct: 135 LKLKDAGKFADVTSKIAAKPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTL 194 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS------GIHLNGATANFDPKTHKPVV 270 + G S G V Sbjct: 195 NTTDVMISGSFSVDETKNLSGILNAGALPVKLDEIYSTSVGAQFGDEALKSTIFAGIVGV 254 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 I F M I + L V +P A + G A I Sbjct: 255 VIIFLFMLFYYRLPGVISIITLVVFTFLVLVVFDWINAVLTLPGIAAIVLGIGMAVDANI 314 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LAA L + + + +G+ +I + ++ F + Sbjct: 315 LAAERIREELRVGYSAKQAFQIGSKQSLSAIVDAQLTTLLAAGILFYFGTSSVKGFATTL 374 Query: 391 DFSIFLNVILTLALLSLL------GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444 SI L+ + + +L P+ GI +++ NI + + +R Sbjct: 375 IISILLSFLTAVWGSRVLLGFLVNSGYFNNPAWYGIAKSKQHSLEENIGTLDLTTKFDRF 434 Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITAL----IATVVLFFFGGGAVRGFAITMGLSILISM 500 + F I + + + + + F G T+ + Sbjct: 435 DFVHN---RKKFYTFSLAILVAGLVVIGIFRLNLGIDFSSGTRIQIEAEQTLTQEEMAKF 491 Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560 +I ++ I I + ++ ++ Sbjct: 492 VDSIGFPSEDIVLSGEKSTSAVIRYKSDLSQADILKFQKETTDKYGHKPTVSTVSPTVGK 551 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 + I + + + + + S L + + F E + Sbjct: 552 ELVKNAIKALSLAALGIIIYVAIRFEWRMGIGAIVSLLHDVFLIVAVFSFMRLEVDITFI 611 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + + + + TI + E++ +++ L + V + Sbjct: 612 AAVLTIVGYSINDTIVTFDRMRENLDRYDTINDRELLADIVNKSLRQTMGRSVNTVLTVI 671 Query: 681 LIYIWIR---------FKWYFALGAITTLILDITKT 707 ++ I + F +G IT + I Sbjct: 672 IVVIALLIFGAPSIQNFSIALLIGLITGMYSSICIA 707 >gi|229163359|ref|ZP_04291311.1| Protein-export membrane protein SecDF [Bacillus cereus R309803] gi|228620140|gb|EEK77014.1| Protein-export membrane protein SecDF [Bacillus cereus R309803] Length = 754 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 186/690 (26%), Positives = 324/690 (46%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G +RI +QL G QD + R++L T AK Sbjct: 55 GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSADKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + A V + + + GNFT+E+A L Sbjct: 175 MVIWLDFEEGKDSYKAEAAKPNPKFLSA-----ATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + + +S V + + L+I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQALTVSDVHKDFKELKIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNTSIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 62.0 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ N+I + A + ++ + ++ Sbjct: 54 KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|49481498|ref|YP_038461.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196034487|ref|ZP_03101896.1| protein-export membrane protein SecDF [Bacillus cereus W] gi|218905606|ref|YP_002453440.1| protein-export membrane protein SecDF [Bacillus cereus AH820] gi|228935731|ref|ZP_04098544.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948125|ref|ZP_04110409.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123952|ref|ZP_04253144.1| Protein-export membrane protein SecDF [Bacillus cereus 95/8201] gi|49333054|gb|AAT63700.1| protein-export membrane protein, subunit D and subunit F [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195993029|gb|EDX56988.1| protein-export membrane protein SecDF [Bacillus cereus W] gi|218537000|gb|ACK89398.1| protein-export membrane protein SecDF [Bacillus cereus AH820] gi|228659254|gb|EEL14902.1| Protein-export membrane protein SecDF [Bacillus cereus 95/8201] gi|228811483|gb|EEM57820.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823969|gb|EEM69788.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 754 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 186/690 (26%), Positives = 325/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y G+VA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGIVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++ +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSILQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G++V SS+F+A+ I L + + R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|229192622|ref|ZP_04319583.1| Protein-export membrane protein SecDF [Bacillus cereus ATCC 10876] gi|228590929|gb|EEK48787.1| Protein-export membrane protein SecDF [Bacillus cereus ATCC 10876] gi|324328314|gb|ADY23574.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus thuringiensis serovar finitimus YBT-020] Length = 754 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|301055919|ref|YP_003794130.1| protein-export membrane protein subunit D/F [Bacillus anthracis CI] gi|300378088|gb|ADK06992.1| protein-export membrane protein, subunit D and subunit F [Bacillus cereus biovar anthracis str. CI] Length = 754 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 188/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI +FM+V Y G+VA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFVFMLVFYRLPGIVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|228929456|ref|ZP_04092477.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830244|gb|EEM75860.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 754 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 185/690 (26%), Positives = 325/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI +FM+V Y G+VA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFVFMLVFYRLPGIVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++ +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSILQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G++V SS+F+A+ I L + + R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735 Score = 61.2 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|229135235|ref|ZP_04264033.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST196] gi|228648213|gb|EEL04250.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST196] Length = 755 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 189/690 (27%), Positives = 325/690 (47%), Gaps = 22/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGADLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + L A V + + + GNFT+E+A L Sbjct: 175 MVIWLDFEEGKDSYKAEAAKPNNPKFLSA----ATVSQVFNQAEVSIVGGNFTVESAKEL 230 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ +I LFM+V Y GLVA Sbjct: 231 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 290 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 291 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 350 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ STI D+NIT + A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 351 FRAGNHRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 410 Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560 +++ + K + + +IP I F+ SI+ I Sbjct: 411 GLLVKSRYFDKKLSYFGVKEKDIIPLTKGAVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 470 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + +S V +L+ L I + Sbjct: 471 AIILPIFKMNLGIDFASGTRIDLQSKQATTVSNVHKDLKELNIDVKEEDIVPTGDDNKGF 530 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 531 AVRTVGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 586 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF+ +A+ A+ L+ D + F+LF IE +LT +AAVLT+IGYS+ND +V Sbjct: 587 VLYVSIRFRLTYAVSAVIALLHDAFVMMVVFSLFQIEVDLTFIAAVLTIIGYSINDSIVT 646 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 647 FDRNRELYKQKKRVRDIKDLEEIVNSSIRQTIGRSINTVLTVLFPVITLLIFGSESLRNF 706 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ + G+VV SSIF+A+ I L + + R Sbjct: 707 SLALLIGLVVGTYSSIFVASQIWLMLENRR 736 Score = 117 bits (292), Expect = 9e-24, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 91/261 (34%), Gaps = 6/261 (2%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + + + D + + + V + + Sbjct: 169 PPPTNLMVIWLDFEEGKDSYKAEAAKPNNPKFLSAATVSQVFNQAEVSIVGGNFTVESAK 228 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + ++ + VG K ++ + + I I + +++ + ++ Sbjct: 229 ELSSLLNAGALPVDLKEMYS--TSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLP- 285 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L A+ L L I TL F L +AA++ +G +V+ ++ Y+R+++ +K+ Sbjct: 286 GLVAVIMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKI-- 343 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 S + +L + ++ + + +G S + FA + I+V ++ Sbjct: 344 -GKSMMSAFRAGNHRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITN 402 Query: 813 IFIAAPILLFIYDWRAKNARI 833 +F +L + R + ++ Sbjct: 403 VFGTRFLLGLLVKSRYFDKKL 423 Score = 60.9 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ ++I + A + ++ + ++ Sbjct: 54 KGDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|223044139|ref|ZP_03614178.1| putative protein-export membrane protein SecD [Staphylococcus capitis SK14] gi|222442533|gb|EEE48639.1| putative protein-export membrane protein SecD [Staphylococcus capitis SK14] Length = 763 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 173/696 (24%), Positives = 320/696 (45%), Gaps = 22/696 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ A++ + + R++ +G+SE IQ +RI +QL G +D ++ R+LL T A Sbjct: 54 GEKIDKKALQATSRTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ + G + + + V Sbjct: 114 LTIRDAQDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKEKFKKVTEKISKKRDNVM 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + ++ + IN +G ++ A + Sbjct: 174 VVWMDYKKGDSYKKEAKKQQEGKDPKYVSAANVDQPINSDSVEISGGFNGKKGVKEAKQI 233 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AGSLP+ L + +VGA G D++ K A G+ +I LFM+ Y GLVA Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASFIGVGIIYLFMLGFYRLPGLVAI 293 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 ++ TIFDSN+T +IA VLFFFG +V+GFA + L ILI TA+ + R ++ Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILIIFVTAVFLSRGLL 413 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ K + D F++ + +SIL I Sbjct: 414 SLLVSSNFFKKKYWLFGVKKKDRHDINEGKDVHDLKTSFEKWNFVKLAKPLIALSILIVI 473 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + +L LN GIDF G + + N+ + V ++ + + Q Sbjct: 474 VGLVILSIFKLNLGIDFSSGTRADIETNQSLTQGKVEKAVKDVGLSPDQVQINGSGHKNA 533 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + ++ + +K + + V P I +EL + + +I+++I Sbjct: 534 TVQFKKNLSRAEDNKLSDKIKSEFGDT------PQINSVSPLIGQELAKNAMTALILASI 587 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L A+ L+ D+ + F+LF +E +LT +AAVLT++GYS+ND + Sbjct: 588 GIIIYVSLRFEWRMGLSAVLALLHDVFIIVAVFSLFRLEVDLTFIAAVLTIVGYSINDTI 647 Query: 739 VVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ S D++++SI +T+ RS+ T + + V+ + ++G I Sbjct: 648 VTFDRVRENLHKVKVVTSPEQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILIFGAPTIF 707 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +F++ + G++ SS+FIA P+ + + K + Sbjct: 708 NFSLALLIGLISGVFSSVFIAVPLWGIMKKRQLKKS 743 Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 77/178 (43%), Gaps = 4/178 (2%) Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 VG + ++ + K I I + +++ ++ L AI L I TL F Sbjct: 252 NSVGAQFGQDALDKTIFASFIGVGIIYLFMLGFYRLP-GLVAIIALTTYIYLTLVAFNFI 310 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 L +AA++ +G +V+ +++Y+R++ +++ + + K+ + Sbjct: 311 SGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI---GRTLKQAYSKANKSSFLTIFD 367 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++ I+ + +G S + FA + GI++ +++F++ +L + + Sbjct: 368 SNLTTVIAAAVLFFFGESSVKGFATMLLLGILIIFVTAVFLSRGLLSLLVSSNFFKKK 425 Score = 71.6 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 77/742 (10%), Positives = 187/742 (25%), Gaps = 50/742 (6%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65 L + I + LL ++++ ++LGLDL+GG ++ +V+ + Sbjct: 7 LIAFILLVALLFTGMGLTYKNVV---------KNVNLGLDLQGGFEVLYQVNPLDKGEKI 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124 LQ S L + + G+ ++ N+I + A + + ++ Sbjct: 58 DKKALQATSRTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117 Query: 125 KLNVDPKKNL--LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + + K+ + + E+ ++ + + Sbjct: 118 DAQDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKEKFKKVTEKISKKRDNVMVVWM 177 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + +Q + + + GF + L Sbjct: 178 DYKKGDSYKKEAKKQQEGKDPKYVSAANVDQPINSDSVEISGGFNGKKGVKEAKQIAELL 237 Query: 243 VEDKVEIS---------GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 + + G + V I + M I Sbjct: 238 NAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASFIGVGIIYLFMLGFYRLPGLVAIIALT 297 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 + L +P A + G A I+ L I + + + Sbjct: 298 TYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQAYSKA 357 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 +I+ V ++ A + +I+ + + L L+ Sbjct: 358 NKSSFLTIFDSNLTTVIAAAVL---FFFGESSVKGFATMLLLGILIIFVTAVFLSRGLLS 414 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM--GFSRAYSTIFDSNITAL 471 L + I E + S + A I S + + Sbjct: 415 LLVSSNFFKKKYWLFGVKKKDRHDINEGKDV-HDLKTSFEKWNFVKLAKPLIALSILIVI 473 Query: 472 IATVVL----------FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521 + V+L F G A ++ + + + + K Sbjct: 474 VGLVILSIFKLNLGIDFSSGTRADIETNQSLTQGKVEKAVKDVGLSPDQVQINGSGHKNA 533 Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 ++ S+ I I + Sbjct: 534 TVQFKKNLSRAEDNKLSDKIKSEFGDTPQINSVSPLIGQELAKNAMTALILASIGIIIYV 593 Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + LS V + L + I F F E + + + + Sbjct: 594 SLRFEWRMGLSAVLALLHDVFIIVAVFSLFRLEVDLTFIAAVLTIVGYSINDTIVTFDRV 653 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV------IISAIAMLIY---IWIRFKWYF 692 + + + + E + ++R + + + ++ +A+LI+ F Sbjct: 654 RENLHKVKVVTSPEQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILIFGAPTIFNFSLAL 713 Query: 693 ALGAITTLILDITKTLGFFALF 714 +G I+ + + + + + Sbjct: 714 LIGLISGVFSSVFIAVPLWGIM 735 >gi|239827850|ref|YP_002950474.1| bifunctional preprotein translocase subunit SecD/SecF [Geobacillus sp. WCH70] gi|239808143|gb|ACS25208.1| protein-export membrane protein SecD [Geobacillus sp. WCH70] Length = 750 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 191/696 (27%), Positives = 339/696 (48%), Gaps = 27/696 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ ++ ++ + +RI+ +G+SE IQ G +RI +QL G +D ++ R++L T AK Sbjct: 54 GDKIDKETLKSTVSALNKRINVLGVSEPNIQIEGKNRIRVQLAGIKDQNQAREILSTQAK 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + S +++ K P Sbjct: 114 LTFRDVHDNVLMDGSDLVQGGAKLSFDENGKPSVAIKLKDADKFKQVTEKVYKMGPPNNL 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + ++ A D + ++A +NQ I GNFT++ A L Sbjct: 174 LVIW------LDFKEGEDSYAKEAGKADPKFISAAAVNQVFAQTDVSIVGNFTVKEAQQL 227 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AG+LP++L + +VGA G +++ K A + G+ I LFMI+ Y G++A Sbjct: 228 ADLLNAGALPVELKEIYSTSVGAQFGQNALQKTIFAGIVGVAAIFLFMILFYRLPGVIAV 287 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + + L L + + LTLP IA +VLG+G+AVD+NI+ ERI+EE + +SV + Sbjct: 288 ITLTVYIYLILLIFDWMNGVLTLPGIAALVLGVGMAVDANIITYERIKEEIKLGKSVMSA 347 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G + +TI D+NIT +IA +VLF +G +V+GFA + +SIL S TA+ R ++ Sbjct: 348 FRSGNRGSLATIVDANITTMIAGIVLFIYGTSSVKGFATMLIISILASFITAVYGTRLLL 407 Query: 512 IFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGISILFSI 558 ++ + + + + + F++ S L ++ Sbjct: 408 GLLVHSRWLNNKPGYFGVKKSEILNIAETTDHTEVPTKFDRLDFVKHSKKFFIFSGLLTV 467 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I L T LN GIDF G ++ V++++P+++ ++ + L + N Sbjct: 468 IGIIALLTLKLNLGIDFTSGTRIEVMSDKPINVQQLKEEFQKLDLKPEDIVLSGEHNNIG 527 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V + K++ N V P I +EL R ++ V+IS+I Sbjct: 528 VARLIGVLSKKEIAELKAHFKQQYGSE------PNVSTVSPVIGKELARNALIAVLISSI 581 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF+ Y AL AI L+ D + FF+L +E +LT +AAVLT+IGYS+ND + Sbjct: 582 GIIIYVTIRFEIYMALAAIVALLHDAFVIVTFFSLTRLEVDLTFIAAVLTIIGYSINDTI 641 Query: 739 VVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R + + T + ++++++ +TL RS+ T + +V+ + ++G I + Sbjct: 642 VTFDRIRDLLKKRKVKTVDDLKHIVNRALQQTLTRSINTVLTVIFTVVALLIFGSEAILN 701 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 F I + G++ SS+FIAA + + + K + Sbjct: 702 FNIALFVGLICGVYSSLFIAAQLWIVWKGNQLKKGK 737 Score = 63.9 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 51/413 (12%), Positives = 115/413 (27%), Gaps = 23/413 (5%) Query: 43 RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97 I LGLDL+GG ++ EV D L+ L + G+ +++ N+ Sbjct: 31 NIKLGLDLQGGFEVLYEVKPAKKGDKIDKETLKSTVSALNKRINVLGVSEPNIQIEGKNR 90 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 I + A + + + ++ + ++ + + + + +N V Sbjct: 91 IRVQLAGIKDQNQAREILSTQAKLTFRDVHDNVLMDG-SDLVQGGAKLSFDENGKPSVAI 149 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS--FH 215 + + + + + ++ + + A ++ F Sbjct: 150 KLKDADKFKQVTEKVYKMGPPNNLLVIWLDFKEGEDSYAKEAGKADPKFISAAAVNQVFA 209 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI----SGIHLNGATANFDPKTHKPVVD 271 + + + + L D L + EI G V Sbjct: 210 QTDVSIVGNFTVKEAQQLADLLNAGALPVELKEIYSTSVGAQFGQNALQKTIFAGIVGVA 269 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 F M I + + L + +P A + G A I+ Sbjct: 270 AIFLFMILFYRLPGVIAVITLTVYIYLILLIFDWMNGVLTLPGIAALVLGVGMAVDANII 329 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 + + +++ G +I + +++ ++ + + Sbjct: 330 TYERIKEEIKLGKSVMSAFRSGNRGSLATIVDANITTMIAGIVLFIYGTSSVKGFATMLI 389 Query: 392 FSIFLNVI-------LTLALLSLLGATLTLPSIAGI----VLGIGLAVDSNIL 433 SI + I L L LL P G+ +L I D + Sbjct: 390 ISILASFITAVYGTRLLLGLLVHSRWLNNKPGYFGVKKSEILNIAETTDHTEV 442 >gi|229152614|ref|ZP_04280803.1| Protein-export membrane protein SecDF [Bacillus cereus m1550] gi|228630875|gb|EEK87515.1| Protein-export membrane protein SecDF [Bacillus cereus m1550] Length = 754 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 188/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G++V SS+F+A+ I L + + R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|196039285|ref|ZP_03106591.1| protein-export membrane protein SecDF [Bacillus cereus NVH0597-99] gi|196029912|gb|EDX68513.1| protein-export membrane protein SecDF [Bacillus cereus NVH0597-99] Length = 754 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 188/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI +FM+V Y G+VA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFVFMLVFYRLPGIVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|52081243|ref|YP_080034.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus licheniformis ATCC 14580] gi|52786623|ref|YP_092452.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus licheniformis ATCC 14580] gi|319644790|ref|ZP_07999023.1| SecDF protein [Bacillus sp. BT1B_CT2] gi|52004454|gb|AAU24396.1| protein-export membrane protein SecDF [Bacillus licheniformis ATCC 14580] gi|52349125|gb|AAU41759.1| SecDF [Bacillus licheniformis ATCC 14580] gi|317392599|gb|EFV73393.1| SecDF protein [Bacillus sp. BT1B_CT2] Length = 741 Score = 318 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 190/702 (27%), Positives = 343/702 (48%), Gaps = 28/702 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V D++ A+ ++E + +R + +G+SE IQ G++RI +QL G + +R R++ Sbjct: 47 VQPAKQGDKIDRDALISTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVDNQNRAREI 106 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 L T A+++F G + + + + I I L A + Sbjct: 107 LSTQAQLTFRDTNDKELLN----GADLVENGAKQSFKQDTNEPIVTIKLKDADKFGEVTK 162 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 V + + + + K + D + ++AP ++Q + + I GNFTI Sbjct: 163 K---VLDMKPNNQLVIWLDYKKGDSFKKESQKADHKYISAPNVSQVLNTSDVMIEGNFTI 219 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 + A +A++L AG+LP+KL +VGA G ++ A + G+ +I LFM++ Y Sbjct: 220 QEAKDMASILNAGALPVKLVEKYSTSVGAQFGEQALNDTVFAGIIGIAIIFLFMLLYYRL 279 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G +A ++ + + +TL + + A LTLP IA ++LG+G+AVD+NI+ ERI+EE + Sbjct: 280 PGFIAVITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLG 339 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +SV + G R+++TIFD+NIT ++A +VLF FG +V+GFA + LSIL S TA+ Sbjct: 340 KSVRSAFKAGNRRSFATIFDANITTMLAGIVLFIFGTSSVKGFATMLILSILTSFITAVF 399 Query: 506 IVRAMMIFIIRYKKMKSID-------------INPLSRFFLIPDCIAIQFMRARFWGVGI 552 + R ++ ++ + + F+ R W Sbjct: 400 LSRFLLGLLVESRWLDRKKGWFGVRKKDILDIRKTDENTEPPNPFSKWDFVGKRKWFFAF 459 Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 S + + +L LN GIDF G ++ V ++ + + + E + + S Sbjct: 460 SGVLLAAGLIVLLVFKLNLGIDFSSGSRIEVQSDHKLTTQQLEKDFEQVGLDPDSIVLSG 519 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + V + V + K K N V P + +EL R + Sbjct: 520 EKNDHGVARFVGVPNQKKIAEVKDYFKDKYGSE------PNVSTVSPTVGKELARNALYA 573 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 VII++I +++Y+ IRF++ A+ AIT+L+ D + F+L +E ++T +AAVLT+IGY Sbjct: 574 VIIASIGIILYVSIRFEYKMAIAAITSLLYDAFFIIAVFSLTRLEVDVTFIAAVLTIIGY 633 Query: 733 SVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 S+ND +V +DR+R++MK +++ S+ +T RS+ T + I V+ + ++G Sbjct: 634 SINDTIVTFDRIREHMKKRKPKTFSDLSHIVNLSLQQTFTRSINTVLTVVIVVIALLIFG 693 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + I +F++ + G++ SS++IAA + L K + Sbjct: 694 AASISNFSVALLVGLLSGVYSSLYIAAQLWLVWKGRELKKPK 735 Score = 64.7 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 50/421 (11%), Positives = 105/421 (24%), Gaps = 38/421 (9%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + + + IG + + ISLGLDL+GG ++ EV Sbjct: 1 MKKGRL-IAFFLTVLLIGTGLGMFTKPAAD------------NISLGLDLQGGFEVLYEV 47 Query: 61 DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115 D L + L G+ +++ + N+I + A + + + Sbjct: 48 QPAKQGDKIDRDALISTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVDNQNRAREIL 107 Query: 116 TLFLQGVNS-----------KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164 + Q L + K T + I + ++ M Sbjct: 108 STQAQLTFRDTNDKELLNGADLVENGAKQSFKQDTNEPIVTIKLKDADKFGEVTKKVLDM 167 Query: 165 EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK 224 + Q + + + + S + + + S++ + +F + Sbjct: 168 KPNNQLVIWLDYKKGDSFKKESQKADHKYISAPNVSQVLNTSDVMIEGNFTIQEAKDMAS 227 Query: 225 GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284 G ++ + V + ++ + + + G Sbjct: 228 ILNAGALPVKLVEKYSTSVGAQFGEQALNDTVFAGIIGIAIIFLFMLLYYRLPGFIAVIT 287 Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344 ++ VLT P I I + N L Sbjct: 288 LSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFK 347 Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404 I L IVLF+ G + + A+ Sbjct: 348 AGNRRSFA---------TIFDANITTMLAGIVLFIFGTSSVKGFATMLILSILTSFITAV 398 Query: 405 L 405 Sbjct: 399 F 399 >gi|320007470|gb|ADW02320.1| protein-export membrane protein SecD [Streptomyces flavogriseus ATCC 33331] Length = 764 Score = 318 bits (813), Expect = 4e-84, Method: Composition-based stats. Identities = 201/711 (28%), Positives = 341/711 (47%), Gaps = 31/711 (4%) Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 + + + + + ++++E++RQRID +G++E T+ R G RI+++LP Q Sbjct: 35 QGGTRMVLQAKDSATAKADRESTDRTLEVLRQRIDSLGVAEPTLTRSGEDRIIVELPDVQ 94 Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257 DP + ++G TA++ FH V ++ L V++SG + A Sbjct: 95 DPRQAADVIGRTAQLGFHAVQGPGTEGDDTKETLPDEQGG---LLALGPVKLSGAGVKDA 151 Query: 258 TANFD-PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD-------------GRVL 303 TA FD + V + F + R + +T D P +V Sbjct: 152 TAQFDAQQGTGWSVSLDFHKDAGREWNRLTGDAACHPAGDERRRVAIVLDGKVISSPQVD 211 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 + +PSG QI+G+F+ E A LA +++ G+LP+ + IVE+R VG LG+ +I Sbjct: 212 PSIACEAGLPSGSTQITGSFSAEEAQDLALLIKGGALPVPVEIVEQRTVGPTLGAAAIDA 271 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 A + G LF+IV+Y +G +A ++ +++ A L LG TLTLP +AG VL Sbjct: 272 SARAALIGAAATALFIIVMYRLFGALAAAALAAYGVISYAALVALGVTLTLPGLAGFVLA 331 Query: 424 IGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 IG+AVD+N+LV ER REE S+ +L GF A+S + DSN+T LIA +LFF G Sbjct: 332 IGMAVDANVLVFERAREEYADRGKGSLRTALTAGFRGAWSAVADSNVTTLIAAALLFFLG 391 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFLIPDC 537 G V+GF +T+ + +L+SMF+A+ I RA+ + + I R + Sbjct: 392 SGPVKGFGVTLAIGVLVSMFSALVIARALTEIAAGSRFVSDYRGVNGIARPGRVRTWLNK 451 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 Q R+ + S + ++ + G++ G++F GG + +RPVD+ R Sbjct: 452 REPQLFRSPRRWLLTSTALVLVAVTGILVRGVDLGVEFTGGRLVEYSTSRPVDVETARDA 511 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 + + D ++ + + + E++ Sbjct: 512 ISAAGFTDAEVTTAGERD-------ISVRTGEMDNDGEHALRAALADEGGATEKVRDELI 564 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + EL R ++ + ++ L Y+ RF+W FA+ ++ L+ D+ +G FA G Sbjct: 565 GPSLGDELRRNALIALAVAVFVQLAYLAARFRWTFAVSSVGALVHDVIILVGAFAWLGRP 624 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + +AA+LT+IGYSVND VVV+DR+R+ + D+ ++++ +T+ R+V T M Sbjct: 625 VDGIFLAALLTVIGYSVNDSVVVFDRVRE-LWTRNRRTPVADVANRAVLQTVPRTVNTGM 683 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 A ++ +AV GG + FA+ + GI V SS+ A P L + Sbjct: 684 GALFILVALAVLGGDSLADFALALLIGICVGTYSSVMTAVPGALLLERSSK 734 Score = 70.1 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 11/156 (7%) Query: 45 SLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITL 100 LGLDL+GG+ +VL+ + LR + G+ ++ + ++I + Sbjct: 29 RLGLDLQGGTRMVLQAKDSATAKADRESTDRTLEVLRQRIDSLGVAEPTLTRSGEDRIIV 88 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 D + AD + Q + + L + + Sbjct: 89 ELPDVQDPRQAADVIGRTAQLGFH----AVQGPGT---EGDDTKETLPDEQGGLLALGPV 141 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196 + S ++ Q + T + Sbjct: 142 KLSGAGVKDATAQFDAQQGTGWSVSLDFHKDAGREW 177 >gi|323490003|ref|ZP_08095224.1| bifunctional preprotein translocase subunit SecD/SecF [Planococcus donghaensis MPA1U2] gi|323396299|gb|EGA89124.1| bifunctional preprotein translocase subunit SecD/SecF [Planococcus donghaensis MPA1U2] Length = 758 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 193/702 (27%), Positives = 329/702 (46%), Gaps = 28/702 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V + + ++ + + + RI+ +G+SE IQ G RI +QL G +D S R+L Sbjct: 48 VTALEDGQEITQDVLTDTTNALMNRINVLGVSEPVIQIEGEDRIRVQLAGIEDQSSAREL 107 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 L T A ++F + G + + ++ + F T Sbjct: 108 LSTEANLTFRDAED----NLLLSGNDLKQGGATGTFDSNGNPIVTLE--LNDPSKFAEIT 161 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + S + + + + D + ++AP + Q I S +ISG+FT+ Sbjct: 162 DQVSQTPSPNNVLVIWLDFEEGVDSYAEERLKADPKFVSAPSVKQRISSPSVEISGSFTV 221 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E LA +L AG+LP+ L + +VGA G ++ + A G+ L++LFM+V Y Sbjct: 222 EETQNLAGILNAGALPVSLEEIYSTSVGAQFGEQALDQTMVAAAVGIALVLLFMLVYYRL 281 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G+VA ++ V L L + +G LTLP IA I+LG+G+AVD+NI+ ERIREE R Sbjct: 282 PGMVAVVTLSAYVYLILLVFEWIGGVLTLPGIAAIMLGVGMAVDANIITYERIREEMRTG 341 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +S+ S +G ++S I D+N+T L+A VLF++G +V+GFA + +SIL+S TA+ Sbjct: 342 KSIKESFQVGARSSFSAIIDANVTTLLAAAVLFYYGTSSVKGFATLLIISILVSFLTAVW 401 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGI 552 R ++ + + + + +I F R R Sbjct: 402 GSRLLLGLWVNSGVLDNKPGMFGLKKSVIHSQQENLEITDLSTRFDRFDFARNRNKFFLA 461 Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 SI+ + + +L LN GIDF G ++ + + + V++ L+ Sbjct: 462 SIVLIVSGMAVLGVFRLNLGIDFSSGTRVEIASEAALTKEEVQTFLDGAGFETDDIVISG 521 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 E N V + + + I N V P + +EL + + Sbjct: 522 DESNIGVARFAEEFSQEEINNLKAVT------IDEFGAEPNVSTVSPTVGQELAKNALYA 575 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 + I+AI ++IY+ RF+W + +I LI D + F+L +E ++T +AAVLT+IGY Sbjct: 576 LSIAAIGIIIYVAFRFEWRMGVASIVALIHDAFFIVAAFSLLRLEVDITFIAAVLTIIGY 635 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVLPMAVW 789 S+ND +V +DR+R+NMK + +++ S+ +TLGRSV T + + V+ + ++ Sbjct: 636 SINDTIVTFDRIRENMKRMKKIDTVEQLEKVVNVSLRQTLGRSVNTVLTVLLVVIALLIF 695 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G I +F+I + G++ SSIFIAA + L + Sbjct: 696 GAPSITNFSIALLIGLIAGTYSSIFIAAQLWLILKKGELNKK 737 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 42/413 (10%), Positives = 112/413 (27%), Gaps = 20/413 (4%) Query: 1 MR-NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + ++ IG++ + + I LGLDL+GG ++ E Sbjct: 1 MKARGRIIAFFLLVVVLIGVIGS-----TSLPIA--------KDIKLGLDLQGGFEVLYE 47 Query: 60 V----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADK 114 V D + L ++ L + + G+ ++ ++I + A + + + Sbjct: 48 VTALEDGQEITQDVLTDTTNALMNRINVLGVSEPVIQIEGEDRIRVQLAGIEDQSSAREL 107 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 ++ + + + + N V + S Sbjct: 108 LSTEANLTFRDAEDNLLLSG-NDLKQGGATGTFDSNGNPIVTLELNDPSKFAEITDQVSQ 166 Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234 S + + + ++ + + + P+ G Sbjct: 167 TPSPNNVLVIWLDFEEGVDSYAEERLKADPKFVSAPSVKQRISSPSVEISGSFTVEETQN 226 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 + + + + +V + F V G Sbjct: 227 LAGILNAGALPVSLEEIYSTSVGAQFGEQALDQTMVAAAVGIALVLLFMLVYYRLPGMVA 286 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 V L V ++ + I + G+ I+ + +++ Sbjct: 287 VVTLSAYVYLILLVFEWIGGVLTLPGIAAIMLGVGMAVDANIITYERIREEMRTGKSIKE 346 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 + + I A + ++ ++ Y V F+ L + + ++ L+ Sbjct: 347 SFQVGARSSFSAIIDANVTTLLAAAVLFYYGTSSVKGFATLLIISILVSFLTA 399 >gi|229032061|ref|ZP_04188043.1| Protein-export membrane protein SecDF [Bacillus cereus AH1271] gi|228729253|gb|EEL80248.1| Protein-export membrane protein SecDF [Bacillus cereus AH1271] Length = 754 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 188/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y G+VA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGIVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFVTNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPAYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + + +S V + + L+I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQALTVSDVHKDFKELKIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|229019634|ref|ZP_04176445.1| Protein-export membrane protein SecDF [Bacillus cereus AH1273] gi|229025873|ref|ZP_04182269.1| Protein-export membrane protein SecDF [Bacillus cereus AH1272] gi|228735425|gb|EEL86024.1| Protein-export membrane protein SecDF [Bacillus cereus AH1272] gi|228741658|gb|EEL91847.1| Protein-export membrane protein SecDF [Bacillus cereus AH1273] Length = 754 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 332/690 (48%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ +A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRNALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSADKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKEL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ +I LFM+V Y G+VA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGIVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 VMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFVTNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + S++ I Sbjct: 410 SLLVKSRYFDKKPSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSMVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + + +S V +L+ L+I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQALTVSDVHKDLKELKIDVKEEDIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G + T N V P I +E+ R + V+I+++ + Sbjct: 530 AVRTLGVLSKDEIAKAKTFFQ----DKYGTEPNVSTVSPTIGKEIARNAFIAVLIASVVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F+LF IE +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSLFQIEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 60.9 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ ++I + A + ++ + ++ Sbjct: 54 KGDKIDRNALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|228954695|ref|ZP_04116718.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805022|gb|EEM51618.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 754 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 189/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L V +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYVFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNISTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G++V SS+F+A+ I L + + R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|229048120|ref|ZP_04193691.1| Protein-export membrane protein SecDF [Bacillus cereus AH676] gi|229111883|ref|ZP_04241429.1| Protein-export membrane protein SecDF [Bacillus cereus Rock1-15] gi|229146982|ref|ZP_04275344.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST24] gi|296504903|ref|YP_003666603.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus thuringiensis BMB171] gi|228636479|gb|EEK92947.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST24] gi|228671639|gb|EEL26937.1| Protein-export membrane protein SecDF [Bacillus cereus Rock1-15] gi|228723223|gb|EEL74597.1| Protein-export membrane protein SecDF [Bacillus cereus AH676] gi|296325955|gb|ADH08883.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus thuringiensis BMB171] Length = 754 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 188/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G++V SS+F+A+ I L + + R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|228960684|ref|ZP_04122328.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798990|gb|EEM45963.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 754 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 189/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G++V SS+F+A+ I L + + R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|228941579|ref|ZP_04104127.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974508|ref|ZP_04135075.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981102|ref|ZP_04141403.1| Protein-export membrane protein SecDF [Bacillus thuringiensis Bt407] gi|229071919|ref|ZP_04205130.1| Protein-export membrane protein SecDF [Bacillus cereus F65185] gi|229081675|ref|ZP_04214170.1| Protein-export membrane protein SecDF [Bacillus cereus Rock4-2] gi|229180687|ref|ZP_04308027.1| Protein-export membrane protein SecDF [Bacillus cereus 172560W] gi|228602832|gb|EEK60313.1| Protein-export membrane protein SecDF [Bacillus cereus 172560W] gi|228701679|gb|EEL54170.1| Protein-export membrane protein SecDF [Bacillus cereus Rock4-2] gi|228711215|gb|EEL63179.1| Protein-export membrane protein SecDF [Bacillus cereus F65185] gi|228778643|gb|EEM26909.1| Protein-export membrane protein SecDF [Bacillus thuringiensis Bt407] gi|228785225|gb|EEM33237.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818086|gb|EEM64163.1| Protein-export membrane protein SecDF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942192|gb|AEA18088.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus thuringiensis serovar chinensis CT-43] Length = 754 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 188/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNISTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G++V SS+F+A+ I L + + R Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|229098885|ref|ZP_04229821.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-29] gi|229117910|ref|ZP_04247272.1| Protein-export membrane protein SecDF [Bacillus cereus Rock1-3] gi|228665567|gb|EEL21047.1| Protein-export membrane protein SecDF [Bacillus cereus Rock1-3] gi|228684558|gb|EEL38500.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-29] Length = 754 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 189/690 (27%), Positives = 329/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G +RI +QL G QD + R++L T AK Sbjct: 55 GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + A K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFRAVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKEL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ +I LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT + A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ SI+ I Sbjct: 410 SLLVKSRYFDKKPSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + V ++ V + + L+I + Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQAVTVADVHKDFKELKIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF+ +A+ A+ L+ D + F+LF IE +LT +AAVLT+IGYS+ND +V Sbjct: 586 VLYVSIRFRLTYAVSAVIALLHDAFVMIVVFSLFRIEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDLKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ + G+VV SSIF+A+ I L + + R Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRR 735 Score = 62.0 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEVLYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ N+I + A + ++ + ++ Sbjct: 54 KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|313680241|ref|YP_004057980.1| protein translocase subunit secf;protein translocase subunit secd [Oceanithermus profundus DSM 14977] gi|313152956|gb|ADR36807.1| protein translocase subunit secF;protein translocase subunit secD [Oceanithermus profundus DSM 14977] Length = 719 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 209/692 (30%), Positives = 352/692 (50%), Gaps = 26/692 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLR 203 V+ Q + +E++ +I RI+ +G++E IQ +RI+++LPG + Sbjct: 45 VVLQTDNPNPDPDDLEKARLVIENRINGLGVAEPLIQIAQPNRIVVELPGLSPEEQDKAL 104 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 +L+G A + F V + K + VE+ G L A F Sbjct: 105 KLIGQQAVLEFRIVKQDAQGKA----------TSELTLDDLGPVELKGSDLVDARVQF-D 153 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 + ++P V + F GA++F ++TR+NIG+ LA+VLDG + +AP I AI G+A I+G Sbjct: 154 RFNRPEVALEFTPEGAKKFADLTRNNIGRRLAIVLDGTIYSAPNIQTAITDGRAVITGIN 213 Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383 ++ A +A +LR+GSLP+ L++ E R +G LG D+I G A V G +LI + + + Y Sbjct: 214 DLDEATQIALVLRSGSLPVPLHVEEVRAIGPTLGKDAIRAGIVASVVGALLIFVLLYLYY 273 Query: 384 -GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 +G VA + +L + +LS LGA LTLP IAG +L +G AVD N+L ERI+EE Sbjct: 274 GFWFGSVAAIGLLYIALLIMGVLSGLGAVLTLPGIAGFILTLGAAVDGNVLSFERIKEEL 333 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 + + + ++ GF + TI D+NI+ L+A L+ + G VRGFA+ + + I++++F+ Sbjct: 334 KLGKKLRQAIPDGFVHSTVTILDANISTLLAAAALYQYSTGPVRGFAVMLAIGIVVAVFS 393 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 + R M+ I I F++ ++ F+ Sbjct: 394 NLVFSRWMLE---------RIAAAREVIPPYWIWGTKIPFLKEARIFTPATLTFAALMGA 444 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622 ++F +G N+GIDF GG V V + +RS L+ +QI +S + + Sbjct: 445 VVFFNGFNFGIDFTGGTAYLVRTGPEVTVDRIRSFLDEVQIQGVSAKEAIITEVESPLAD 504 Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAM 680 Y+ + V + +E+VGP + EL R ++ V++ + Sbjct: 505 YKEFSVRVGLLSNDGVIALRKAFEEKLNAEVLQSEVVGPAVGAELRRNTVLAVLVGLGLI 564 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 LIY+ RF W F + ++ + D+ T G F+L G+EF + VAA+LT+IGYS+ND ++V Sbjct: 565 LIYMAFRFDWIFGVASVIAVGHDVAITAGAFSLMGLEFTIPIVAALLTIIGYSINDSIIV 624 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 DR+R+N + I + +L+D SIN+TL R+V TS + + + GG V+ F+I Sbjct: 625 SDRIREN-QKVVRGIPYNELVDLSINQTLSRTVMTSFTTMLPLFALLFIGGPVLRDFSIA 683 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + GI+V SSI++ ++ + + + Sbjct: 684 LLIGILVGTFSSIYVVGSLVTWWKMRQPAPRK 715 Score = 71.6 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 47/144 (32%), Gaps = 15/144 (10%) Query: 7 LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNR-ISLGLDLRGGSHLVLEVDEDDF 65 + + + + A+ + P I+LGLDL+GG +VL+ D + Sbjct: 6 TTAILLFVLFVAAIAAM-----------WKPWAPNEPMINLGLDLKGGLRVVLQTDNPNP 54 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFAD--SRFKENIADKVTLFLQGV 122 L+ + + + G+ ++ N+I + ++ + Sbjct: 55 DPDDLEKARLVIENRINGLGVAEPLIQIAQPNRIVVELPGLSPEEQDKALKLIGQQAVLE 114 Query: 123 NSKLNVDPKKNLLVTTTEKEISIV 146 + D + T ++ V Sbjct: 115 FRIVKQDAQGKATSELTLDDLGPV 138 >gi|218235940|ref|YP_002369220.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus cereus B4264] gi|218163897|gb|ACK63889.1| protein-export membrane protein SecDF [Bacillus cereus B4264] Length = 754 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 189/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SS+F+A+ I L + + R Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|295399345|ref|ZP_06809327.1| protein-export membrane protein SecD [Geobacillus thermoglucosidasius C56-YS93] gi|312110095|ref|YP_003988411.1| protein-export membrane protein SecD [Geobacillus sp. Y4.1MC1] gi|294978811|gb|EFG54407.1| protein-export membrane protein SecD [Geobacillus thermoglucosidasius C56-YS93] gi|311215196|gb|ADP73800.1| protein-export membrane protein SecD [Geobacillus sp. Y4.1MC1] Length = 750 Score = 317 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 190/696 (27%), Positives = 345/696 (49%), Gaps = 27/696 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ ++ + +RI+ +G+SE IQ G +RI +QL G +D ++ R++L T AK Sbjct: 54 GDKIDNDTLKSTVSALNRRINVLGVSEPNIQIEGKNRIRVQLAGIKDQNQAREILATQAK 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V + G + + +++ K P Sbjct: 114 LTFRDVNDHVLMDGSDLVQGGAKLTFDENGKPSVAIKLKDADKFKEVTEKVYKMGPPNNL 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + ++ K A D + ++A +NQ I GNFT++ A L Sbjct: 174 LVIW------LDFKEGEDSYKKEAGKADPKFISAAAVNQVFNQTDVSIVGNFTVKEAQQL 227 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AG+LP++L + ++GA G +++ K A + G+ I LFMI+ Y G++A Sbjct: 228 ADLLNAGALPVELKEIYSTSIGAQFGQNALQKTVFAGIVGVAAIFLFMILFYRLPGVIAV 287 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + + LTL + + LTLP IA ++LG+G+AVD+NI+ ERI+EE + +S+ + Sbjct: 288 ITLTVYIYLTLLIFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEEIKLGKSIMSA 347 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G +++TIFD+NIT +IA VVLF +G +V+GFA T+ +SIL+S TA+ R ++ Sbjct: 348 FRSGNKGSFATIFDANITTIIAGVVLFIYGTSSVKGFATTLIISILMSFITAVYGTRLLL 407 Query: 512 IFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGISILFSI 558 ++ + + + + + F++ S L ++ Sbjct: 408 GLLVNSRILNNKPGYFGVKKSEILNIAEITDHTEVPTKFDRLDFVKHSKKFFIFSGLLTV 467 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I L T LN GIDF G ++ V++++P+++ + + L + N Sbjct: 468 VGIIALLTMKLNLGIDFASGTRVEVMSDKPINVQQLEGEFQKLGLKPKDIVLSGDHNNVG 527 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V + K++ N V P + +EL R ++ V+IS+I Sbjct: 528 VARFIGVLSKKEIAELKMHFKQQYGSE------PNVSTVSPVVGKELARNALIAVLISSI 581 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+ Y AL AI L+ D + FF+L +E +LT +AAVLT+IGYS+ND + Sbjct: 582 GIIIYVTVRFEMYMALAAIVALLHDAFFIVTFFSLTRLEVDLTFIAAVLTIIGYSINDTI 641 Query: 739 VVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R M + T + ++++++ +TL RS+ T + +V+ + ++G I + Sbjct: 642 VTFDRVRDLMKKRKVKTVDDLKHIVNRALQQTLTRSINTVLTVLFTVVALLIFGSKAIFN 701 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 F + + G+V SS+FIAA + + + K + Sbjct: 702 FNVALFVGLVCGVYSSLFIAAQLWVVWKGNQLKKGK 737 Score = 61.2 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 43 RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97 I LGLDL+GG ++ EV D N L+ L + G+ +++ N+ Sbjct: 31 NIKLGLDLQGGFEVLYEVKPAKKGDKIDNDTLKSTVSALNRRINVLGVSEPNIQIEGKNR 90 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNV 128 I + A + + + + + +N Sbjct: 91 IRVQLAGIKDQNQAREILATQAKLTFRDVND 121 >gi|294055366|ref|YP_003549024.1| protein-export membrane protein SecD [Coraliomargarita akajimensis DSM 45221] gi|293614699|gb|ADE54854.1| protein-export membrane protein SecD [Coraliomargarita akajimensis DSM 45221] Length = 854 Score = 317 bits (810), Expect = 8e-84, Method: Composition-based stats. Identities = 189/798 (23%), Positives = 348/798 (43%), Gaps = 86/798 (10%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 ++++ LGLDL+GG + ++VD + G Sbjct: 117 QSQLRLGLDLKGGVGVTMKVD-EAATEGMS------------------------------ 145 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 F + ++ + L G + ++ + I I + + + Sbjct: 146 QFQQAEQLKDAIRIMGDRLDG------SGVAEPIIRPKGDTAIEIQMPGLSTKENP---- 195 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 E I + + + + + P E + + T +++ ++ Sbjct: 196 EIIDVIKKPARLEFRSVHPSKTPYNTAKEDYPSPYEYEVLVMENEDRKTGQVAETEM--- 252 Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280 ++ E +G + A A + + + + G+ Sbjct: 253 ---------------------FIKRIPEATGEIVKDAYAYPNQAG-GFEIHLEMTDEGSD 290 Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340 VT +GKPLA+VLDG++ +AP +N S AQI+G+F+ A LA +L L Sbjct: 291 VLRSVTERMVGKPLAIVLDGKLYSAPTVNSV-LSKNAQITGSFSQREAIDLANVLN-NPL 348 Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 + L + E VG + D+ A+ G L+VLFM+ Y GLVA S +NV++ Sbjct: 349 ALPLAVDEMYEVGPSMAEDARDSSINAVKVGATLVVLFMVAYYFIGGLVAVISALINVVI 408 Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460 L +L+ LGATLTLP +A +VL +G+ VD+NIL+ ER+REE + +++ + F + Sbjct: 409 VLGVLASLGATLTLPGVAALVLTLGMGVDANILIFERLREELKAGKTIKNAAAGAFQKVT 468 Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 STI D+N+T LI +L + G G V+GF T+ + I S+F A+ + R M+ F++ M Sbjct: 469 STIVDANVTTLITACILIWLGTGPVKGFGYTLAIGICASIFCALIVTRFMIDFLVYRLNM 528 Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGI 579 + I F + R S L + + H N GIDF GG Sbjct: 529 SKV------LGLNFGGNFNIDFFKFRKPAFIASWLLVAAGVVSVVIHHDNIMGIDFTGGD 582 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 ++ + + + S + E L++G+++ + L+ Q ++ + V Sbjct: 583 EMTIAFDERIAASELNVAAEELELGEVNPVYQTLIGSGEEVLKIQTRFDQSRDVL---VG 639 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + +G +S ++ + V+ + +L+Y+ RF+ + +GA+ Sbjct: 640 LQAAFPSANLQEVGMNQIGASVSNDIQWNALWSVVAALGGILLYVAFRFEVGYGVGAVVA 699 Query: 700 LILDITKTLGFFALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 I D+ T+G F L G +F+ +AA+L ++GYS+ND +VV+DR+R+ ++L Sbjct: 700 TIHDVLMTVGVFVLCGELGIFVSGQFSAPMLAAILMIVGYSINDTIVVFDRIREELELNP 759 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 R +I+ +I+ RS+ TS+ ++ + + ++G VI F+ GI+ SS Sbjct: 760 -GAGLRHIINMAISRVFSRSLLTSITTLLAAVSLYIFGAGVINDFSFVFIIGILTGTFSS 818 Query: 813 IFIAAPILLFIYDWRAKN 830 IFIA+P+ + + ++ Sbjct: 819 IFIASPVFYWWHKGDRRH 836 >gi|320449991|ref|YP_004202087.1| bifunctional preprotein translocase subunit SecD/SecF [Thermus scotoductus SA-01] gi|320150160|gb|ADW21538.1| bifunctional preprotein translocase, subunit SecD/SecF [Thermus scotoductus SA-01] Length = 735 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 212/700 (30%), Positives = 365/700 (52%), Gaps = 25/700 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLR 203 ++ + ++ +E++ I+ RI+ +G++E IQ G RI+++LP + D R Sbjct: 45 IVLEAAVENPTPDDLEKARTILENRINALGVAEPLIQIQGQRRIVVELPGLSQADQDRAL 104 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG----------NQYLVEDKVEISGIH 253 +L+G A + F + + + LR++ + ++G Sbjct: 105 KLIGQRAVLEFRILKEGATGTTVAQINQALRENPRLKREDLEKDLIKPEDLGPPLLTGAD 164 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313 L A A FD +P V ++F GA++F EVTR N+GK LA+VLDG+V TAPVI QAI Sbjct: 165 LADARAVFDQFG-RPQVALTFTPEGAKKFEEVTRANVGKRLAIVLDGKVYTAPVIRQAIT 223 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 G+A I G ++E A +A +LR+G+LP+ L + E R +G LG D+I G + + G + Sbjct: 224 GGQAVIEGLSSLEEASEIALVLRSGALPVPLEVAEIRAIGPTLGQDAIQAGIRSALIGTL 283 Query: 374 LIVLFMIVLYGKW-GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432 I L + YG GLVA + +L L LLS LGATLTLP IAG+VL +G AVD N+ Sbjct: 284 AIFLLIFAYYGPSLGLVASLGLIYTSVLILGLLSGLGATLTLPGIAGLVLTLGAAVDGNV 343 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 L ERI+EE + ++ GF + TI D N L+A L+ + G VRGFA+ + Sbjct: 344 LSFERIKEELAAGKKFRQAIPEGFKHSTLTILDVNAAHLLAAAALYQYATGPVRGFAVIL 403 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552 + ++ S+F+ + R ++ + ++K + FM + Sbjct: 404 AIGVVASVFSNLVFSRYLLERLADRGEIK---------PPMWLVNPRFNFMGPARFITLA 454 Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 ++L ++ + ++FT G NY IDF GG + V + +R LE+ Sbjct: 455 TLLLAVLAAGVVFTKGFNYSIDFTGGTAYTLRTGPEVGVDTLRRFLETKGFPAKEAVITQ 514 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ +++ + + + + + E VGP I EL R ++ Sbjct: 515 VQAPTADYREFSVKLPPLPDAKRLELERLLGAELKATVLTS-ETVGPAIGSELRRNAVMA 573 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 V++ +L+Y+ RF W F + ++ + D+ G ++L G+EF++ +AA+LT++GY Sbjct: 574 VLVGLGLILLYVAFRFDWTFGVASVLAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGY 633 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 S+ND +VV DR+R+N KL + +R+++++SIN+TL R+V TS+ + ++ + GGS Sbjct: 634 SINDSIVVSDRIRENQKLL-RGVPYREMVNRSINQTLSRTVMTSLTTLLPIIALLFLGGS 692 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 V+ F++ + GI V SSI++ + +++F + R + A+ Sbjct: 693 VLRDFSLAIFVGIFVGTYSSIYVVSAMVVFWKELRQRQAK 732 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 4/111 (3%) Query: 35 FPSAMPKNR-ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93 + P + LGLDL+GG +VLE ++ L+ L + + G+ ++ Sbjct: 23 WKPWAPAEPKVKLGLDLKGGLRIVLEAAVENPTPDDLEKARTILENRINALGVAEPLIQI 82 Query: 94 IQN-KITLSFAD--SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141 +I + ++ + L + + Sbjct: 83 QGQRRIVVELPGLSQADQDRALKLIGQRAVLEFRILKEGATGTTVAQINQA 133 >gi|229076042|ref|ZP_04209013.1| Protein-export membrane protein SecDF [Bacillus cereus Rock4-18] gi|228707076|gb|EEL59278.1| Protein-export membrane protein SecDF [Bacillus cereus Rock4-18] Length = 754 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 189/690 (27%), Positives = 329/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G +RI +QL G QD + R++L T AK Sbjct: 55 GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + A K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFRAVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKEL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ +I LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT + A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ SI+ I Sbjct: 410 GLLVKSRYFDKKQSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + V ++ V + + L+I + Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQAVTVADVHKDFKELKIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF+ +A+ A+ L+ D + F+LF IE +LT +AAVLT+IGYS+ND +V Sbjct: 586 VLYVSIRFRLTYAVSAVIALLHDAFVMIVVFSLFRIEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDLKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ + G+VV SSIF+A+ I L + + R Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRR 735 Score = 62.0 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEVLYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ N+I + A + ++ + ++ Sbjct: 54 KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|255994170|ref|ZP_05427305.1| protein-export membrane protein SecDF [Eubacterium saphenum ATCC 49989] gi|255993838|gb|EEU03927.1| protein-export membrane protein SecDF [Eubacterium saphenum ATCC 49989] Length = 758 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 196/709 (27%), Positives = 326/709 (45%), Gaps = 18/709 (2%) Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIGIS 177 GV + K NL + ++ +Q + ++Q+ +I +R++ +G+S Sbjct: 25 FNGVGGSKPLKDKVNLGLDIKGGAYVLMEAQTDKKGAELKKLMDQTQAVIEKRVNALGLS 84 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E TI G R+ I++PG ++ + +G TA++ F + G Sbjct: 85 EPTITIEGEKRLRIEMPGAENTDDAIKKIGKTAQLKFLLADESEVLTGKDVKNASTEVDQ 144 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 N G +L + + ++ Sbjct: 145 NN-----------GGYLVNLEFTDKGAKLFEEGTKEAISKAHKPKDSNLQSDVIIIKLDD 193 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + G F A L+A++R G+LP+ + V A +G Sbjct: 194 KVISSPQVQGVISGGTCQITSGKGGFRKSEATELSALIRGGALPVAMKEVSSSQQDATIG 253 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 ++ K A + G++LI + M++LY GLVA+ ++ +++ +A+++L+G+TLTLP I Sbjct: 254 YNAFEKSVKAGIIGVILIFILMVLLYRVMGLVANLALLAYIVILVAVMALMGSTLTLPGI 313 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGIVL IG+AVD+N+++ RIREE ++ S + GF + STI DS IT IA VVL Sbjct: 314 AGIVLSIGMAVDANVIIFTRIREELSAGGAIRPSCENGFKNSMSTIIDSQITTFIAAVVL 373 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFFLIP 535 + G V+GFA T+ + I S+ TA+ + R M + K Sbjct: 374 YQLGTSLVKGFAWTLMIGIAASILTAVILTRLFMTVLSHSNIFADKKFFGVKKDNKISFE 433 Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM+ R ISI+ + + G NYGIDF GG + V ++ VD ++ Sbjct: 434 LNTNINFMKIRKIAYIISIVVFLIGGGIFIARGYNYGIDFTGGTMMHVDMHKVVDQDKLK 493 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 S L+ + + G+ N V ++ + A L K +I I+ Sbjct: 494 SFLKKNDVAG--EVIYAGKANKEVIVRTRKHLDRASREKLLEAMHKEYKIDKKKDIKEFN 551 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714 GP I + L + I + I+A+ ML+YI IRF+ W F A+ +I D+ L F+++F Sbjct: 552 DFGPSIGKLLRQNAIKALAIAAVLMLVYIRIRFRKWRFGGAALIGVIHDVLIMLAFYSIF 611 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 E + +AA+LT+ GYS+ND +V++DR+R+N Y + D+I+KSIN TL RS+ Sbjct: 612 YYEISNPFIAAILTVFGYSINDTIVIFDRIREN-NKYLKKGAVADVINKSINSTLSRSIV 670 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 TS+ I ++P+ ++ VI SF IP+ G+ SS+FI + Sbjct: 671 TSLTTMIVMVPLLIFTSDVIRSFTIPLMIGVATGTYSSVFICGSLYYDF 719 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 37/85 (43%), Gaps = 4/85 (4%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN- 96 K++++LGLD++GG+++++E D + + + + G+ ++ Sbjct: 35 KDKVNLGLDIKGGAYVLMEAQTDKKGAELKKLMDQTQAVIEKRVNALGLSEPTITIEGEK 94 Query: 97 KITLSFADSRFKENIADKVTLFLQG 121 ++ + + ++ K+ Q Sbjct: 95 RLRIEMPGAENTDDAIKKIGKTAQL 119 >gi|229013628|ref|ZP_04170759.1| Protein-export membrane protein SecDF [Bacillus mycoides DSM 2048] gi|228747687|gb|EEL97559.1| Protein-export membrane protein SecDF [Bacillus mycoides DSM 2048] Length = 754 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 191/690 (27%), Positives = 330/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKEL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ +I LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT + A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560 +++ + K + + +IP I F+ SI+ I Sbjct: 410 GLLVKSRYFDKKLSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + +S V +L+ L I + Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQATTVSNVHKDLKELNIDVKEEDIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTVGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF+ +A+ A+ L+ D + F+LF IE +LT +AAVLT+IGYS+ND +V Sbjct: 586 VLYVSIRFRLTYAVSAVIALLHDAFVMIVVFSLFQIEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNSSIRQTIGRSINTVLTVLFPVITLLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ + G+VV SSIF+A+ I L + + R Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRR 735 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 90/259 (34%), Gaps = 4/259 (1%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 L V+ + + + + G+ ++ Sbjct: 168 MPPPTNLMVIWLDFEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAK 227 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + + VG K ++ + + I I + +++ + ++ L Sbjct: 228 ELSSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLP-GL 286 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A+ L L I TL F L +AA++ +G +V+ ++ Y+R+++ +K+ Sbjct: 287 VAVIMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKI---G 343 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + +L + ++ + + +G S + FA + I+V +++F Sbjct: 344 KSMMSAFRAGNHRSLATILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVF 403 Query: 815 IAAPILLFIYDWRAKNARI 833 +L + R + ++ Sbjct: 404 GTRFLLGLLVKSRYFDKKL 422 Score = 60.9 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ ++I + A + ++ + ++ Sbjct: 54 KGDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|225175545|ref|ZP_03729539.1| protein-export membrane protein SecD [Dethiobacter alkaliphilus AHT 1] gi|225168874|gb|EEG77674.1| protein-export membrane protein SecD [Dethiobacter alkaliphilus AHT 1] Length = 710 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 207/670 (30%), Positives = 358/670 (53%), Gaps = 32/670 (4%) Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 I++++ +IR RID +G++E IQR G RI ++L G +D R+++G TA ++F Sbjct: 59 DRIDRAISVIRNRIDGLGVAEPVIQREGDDRIRVELAGIEDQQAAREVIGRTAMLTF--- 115 Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 + + ++G L A FD + +P V + F Sbjct: 116 -----------------------VGPDGETILTGGDLRNAGVTFDERN-RPAVSLEFSPE 151 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337 G R+F E T +G+ + + LD V++ P + I G A I+ +E A LA MLR+ Sbjct: 152 GTRKFAEATEKYLGQIIYIQLDDEVISNPEVRTIITDGNAIITNQENVEEASNLALMLRS 211 Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397 G+LP++L +E R VG LG DS+ + A VAGL+L+++FM+V Y +G++A S+ Sbjct: 212 GALPVELVELETRAVGPTLGQDSLNRSVQAGVAGLILVLVFMLVYYRVFGIIASVSLITY 271 Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457 + L +LL+ + AT+TL IAG++L +G+AVD+N+++ ERI+EE + +++ S++ GF Sbjct: 272 LALVFSLLTAINATMTLFGIAGLILSVGMAVDANVIIFERIKEEIKTGRTMRTSIEAGFD 331 Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 A+S I D+N+T LIA +LF+F G VRGFA+T+ + IL SM TAI + R ++ + Sbjct: 332 HAFSAILDANVTTLIAAAILFYFATGPVRGFAVTLSIGILASMVTAIFLTRYLLRSFNKA 391 Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577 + +++ + + F+ R +S + I I + T G+N+GIDF G Sbjct: 392 EILRT--PQNDAAKDAGVLAGGVNFVGMRKIAFILSAVLIIVGIASMGTAGMNFGIDFTG 449 Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK--NFLVRLQYQPGDSVAQTRVL 635 G + + + L R LE L + + Q + + Sbjct: 450 GTNIHLNIGQDFTLEEAREVLEPLGLEGATLQQVGATGLGEGQAQELLIKAHELTPEEQD 509 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 ++ + + + E VG + EL R+ ++ +++++IAM+ YI +RF++ FAL Sbjct: 510 AVLAAFQEQYNITTDDYSVESVGAVVGGELTRQALIALLLASIAMIAYITLRFEYRFALS 569 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 AI L+ D L FF++F +E N +AA+L ++GYS+ND +V++DR+R+N+ Sbjct: 570 AIVALLHDALIVLAFFSVFRVEVNGPFIAAILFILGYSINDTIVIFDRVRENL-KNRHKD 628 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 ++++ SI +L RS+ TS+ + +L M ++GG + +F + G+ SSIFI Sbjct: 629 KLTEVVNMSIRSSLRRSIITSLTTLLVLLTMYIFGGVTLQAFISALLVGVFAGTYSSIFI 688 Query: 816 AAPILLFIYD 825 A+P+ L + Sbjct: 689 ASPVWLSWKE 698 Score = 67.0 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 53/454 (11%), Positives = 122/454 (26%), Gaps = 28/454 (6%) Query: 42 NRISLGLDLRGGSHLVLEV----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQN 96 N ++LGLDLRGG +++ + D + +R+ + G+ +++ + Sbjct: 29 NNMNLGLDLRGGVYVLYQAVEADDTGAVGTDRIDRAISVIRNRIDGLGVAEPVIQREGDD 88 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A ++ + + + T ++ + Sbjct: 89 RIRVELAGIEDQQAAREVIGRTAMLTF------VGPDGETILTGGDLRNAGVTFDERNRP 142 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + ++E S E R+ + I D + T Sbjct: 143 AVSLEFSPEGTRKFAEATEKYLG----------QIIYIQLDDEVISNPEVRTIITDGNAI 192 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 + + + LR LVE + G L + N + + + Sbjct: 193 ITNQENVEEASNLALMLRSGALPVELVELETRAVGPTLGQDSLNRSVQAGVAGLILVLVF 252 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 M ++ + L +LTA + I A ++ Sbjct: 253 MLVYYRVFGIIASVSLITYLALVFSLLTAINATMTLFGIAGLILSVGMAVDANVIIFERI 312 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 + + G D +I + + + Y G V F++ L Sbjct: 313 KEEIKTGRTMRTSIEAGFDHAFSAILDANVTTLIAAAI------LFYFATGPVRGFAVTL 366 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 ++ + ++++ + T L + + + + + Sbjct: 367 SIGILASMVTAIFLTRYLLRSFNKAEILRTPQNDAAKDAGVLAGGVNFVGMRKIAFILSA 426 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490 I S TA + + F G Sbjct: 427 VLIIVGI-ASMGTAGMNFGIDFTGGTNIHLNIGQ 459 >gi|229086974|ref|ZP_04219131.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-44] gi|228696350|gb|EEL49178.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-44] Length = 754 Score = 315 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 187/690 (27%), Positives = 325/690 (47%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G +D + R++L T AK Sbjct: 55 GDKIDQAALVSTVGALENRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKAREILSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRPSVGLTLKSADKFREVTEKVSKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + A V + + GNFT+E+A L Sbjct: 175 MVIWLDFEEGKDSYKAEAAKPNPKFLSA-----ATVNQVFNQKEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 + +L AG+LP+ L + +VGA G ++ K A V G+ +I LFM+V Y GLVA Sbjct: 230 SDLLNAGALPVDLKEMYSTSVGAKFGEQALQKTIFASVIGIAIIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE R +S+ + Sbjct: 290 IMLGLYIFITLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT + A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 YRAGNHRSLATILDANITTIAAAGVLFVYGTSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560 +++ + K + + +IP I F+ SI+ I Sbjct: 410 GLLVKSRYFDKKLSYFGVKEKEIIPLSKGVEHAPTRFDRINFVNIGHKFFLFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + + + V+ +L L+I + Sbjct: 470 AIILPIFKLNLGIDFASGTRMDLQSKQAISVEQVQKDLHELKIDVKKEDIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ + + V+I++ + Sbjct: 530 AVRTIGVLSKDEIAKAKTFFH----DKYGTDPNVSTVSPTIGKEIAQNAFIAVMIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVIALLHDAFVMIVVFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRIRDLKDLEEIVNASIRQTIGRSINTVLTVLFPVITLLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + G+VV SSIF+A+ I L + + R Sbjct: 706 SFALMVGLVVGTYSSIFVASQIWLMLENRR 735 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 90/219 (41%), Gaps = 6/219 (2%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 V + + ++ +++ + VG K + ++K I + Sbjct: 210 NQKEVSIVGGNFTVESAKQLSDLLNAGALPVDLKEMYS--TSVGAKFGEQALQKTIFASV 267 Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 I + +++ + ++ L A+ L L I TL F L +AA++ +G +V Sbjct: 268 IGIAIIFLFMLVFYRLP-GLVAVIMLGLYIFITLLVFNWMHAVLTLPGIAALVLGVGIAV 326 Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 + ++ Y+R+++ +++ + +S + +L + ++ + + V+G S + Sbjct: 327 DANIITYERLKEELRIGKSMMSAYRAGNH---RSLATILDANITTIAAAGVLFVYGTSSV 383 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 FA + I+V +++F +L + R + ++ Sbjct: 384 KGFATSLIVSILVGFITNVFGTRFLLGLLVKSRYFDKKL 422 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 18/133 (13%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ + ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 4 RSTRIVAFFLIVLLIGGIIGATGKNVT-------------KGISLGLDLRGGFEILYEVK 50 Query: 62 E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116 D L L + + G+ +++ ++I + A + ++ + ++ Sbjct: 51 PAKKGDKIDQAALVSTVGALENRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKAREILS 110 Query: 117 LFLQGVNSKLNVD 129 + ++ + Sbjct: 111 TQAKLTFRDVDDN 123 >gi|239945458|ref|ZP_04697395.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces roseosporus NRRL 15998] gi|239991922|ref|ZP_04712586.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces roseosporus NRRL 11379] gi|291448915|ref|ZP_06588305.1| translocase subunit secD [Streptomyces roseosporus NRRL 15998] gi|291351862|gb|EFE78766.1| translocase subunit secD [Streptomyces roseosporus NRRL 15998] Length = 776 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 195/715 (27%), Positives = 335/715 (46%), Gaps = 35/715 (4%) Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 I + + ++++E++RQRID +G+SE T+ R G RI+++LP Q Sbjct: 35 QGGTRIVLQARDTATVEADRETTDRTLEVLRQRIDSLGVSEPTLTRSGEDRIIVELPDVQ 94 Query: 198 DPSRLRQLLGTTAKMSFHKVL--------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 DP + +++G TA+++FH V L D G + + Sbjct: 95 DPRQATEVIGRTAQLTFHAVEGEGTDQPEKKTPAPDTDPDRLTLPDEQGRLLALGEPRLS 154 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD---------- 299 + A V + F + + + ++T + P Sbjct: 155 GAGVEDAKAAFDAQGGAGWTVSLEFRKGAGQDWKKLTGEAACHPAGDDRRRVAIVLDEKV 214 Query: 300 ---GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 +V + +PSG QI+G+F+ + A LA +++ G+LP+ + IVE+R VG L Sbjct: 215 ISSPQVDPSVGCRAGLPSGATQITGSFSADEARDLALLIKGGALPVPVEIVEQRTVGPTL 274 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G+ +I A + G LF+ V+Y +G +A ++ +++ A L LG TLTLP Sbjct: 275 GAAAIDASAQAALIGAAATALFITVVYRLFGALAAVALGAYGVISYAALVALGVTLTLPG 334 Query: 417 IAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 +AG VL IG+AVD+N+LV ER REE R +S+ +L GF +A+S + DSN T LIA Sbjct: 335 LAGFVLAIGMAVDANVLVFERAREECADRPKRSLRSALTTGFQKAWSAVADSNATTLIAA 394 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSR 530 +LFF G G V+GF +T+ + ++ SMF+A+ I RA+ + + I Sbjct: 395 GLLFFLGSGPVKGFGVTLAIGVVASMFSALVIARALTEIAANSRFVSDYRGVNGIGRPGA 454 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + R + +S ++ + G++ G++F GG + +RPVD Sbjct: 455 VRTWLVRKDPKLFRKSARWLVVSAALVAVALAGIVVRGVDLGVEFTGGRLVEYSTSRPVD 514 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + R ++ + GD ++ + E +T Sbjct: 515 VETARDSIAAAGFGDAEVTTAGDGD-------LSVRTGKLDNDGEHALRTALAEEGGETT 567 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 E++GP + EL R ++ + ++ L Y+ +RF+W FA+ ++ ++ D+ +G Sbjct: 568 KVRDELIGPSLGDELRRNALIALGVAVAVQLAYLAVRFRWTFAVASVVAMVHDVILVVGA 627 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA G + +AA+LT+IGYSVND VVV+DR+R+ + + +++ +T+ Sbjct: 628 FAWLGRPVDGIFLAALLTVIGYSVNDSVVVFDRVRE-LWGANRRTPLDTIARRAVLQTVP 686 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 R+V T M A ++ +AV GG + FA+ + GIVV SS+F A P L + Sbjct: 687 RTVNTGMGALFILVALAVLGGDSLADFALALLIGIVVGTCSSVFTAVPGALALER 741 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 61/218 (27%), Gaps = 4/218 (1%) Query: 45 SLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITL 100 LGLDL+GG+ +VL+ + + LR + G+ ++ + ++I + Sbjct: 29 RLGLDLQGGTRIVLQARDTATVEADRETTDRTLEVLRQRIDSLGVSEPTLTRSGEDRIIV 88 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 D + + + Q + + T + +Q A+ Sbjct: 89 ELPDVQDPRQATEVIGRTAQLTFHAVEGEGTDQPEKKTPAPDTDPDRLTLPDEQGRLLAL 148 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 + D ++ + + + QD +L + + Sbjct: 149 GEPRLSGAGVEDAKAAFDAQGGAGWTVSLEFRKGAGQDWKKLTGEAACHPAGDDRRRVAI 208 Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258 + + + L +I+G Sbjct: 209 VLDEKVISSPQVDPSVGCRAGLPSGATQITGSFSADEA 246 >gi|306819788|ref|ZP_07453443.1| protein-export membrane protein SecDF [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552157|gb|EFM40093.1| protein-export membrane protein SecDF [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 726 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 218/683 (31%), Positives = 374/683 (54%), Gaps = 36/683 (5%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 ++ I Q++E+ R+RID +G++E I R G RI I+LPG + + Q +G TA Sbjct: 62 ATGDELTKIINQTIEVFRKRIDGMGLTEPIIVRDGDKRIRIELPGATNVNDAIQTIGKTA 121 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 +++F E K + G H+ + + K + VV Sbjct: 122 QLTF--------------------------LNEEGKKLLDGSHVKESKVGSNQKG-QYVV 154 Query: 271 DISFDEMGARRFFEVTRDNI--GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 + F++ GA+ F E T++ K + ++LD +VL+AP +NQ I G A+ISG+FT ++A Sbjct: 155 TLKFNDEGAKLFGEATKEAAPSNKRIIIMLDDKVLSAPTVNQEILGGNAEISGSFTAQSA 214 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 LA +++AG+LP+ +E A LG +++ K G+ L+++FM++ Y GL Sbjct: 215 SELANLIQAGALPVNFTEIESSTKSAQLGDEALLKSVQGAAIGIFLVMMFMLIYYRIPGL 274 Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448 +AD ++ +++ L L + LGATLTLP IA ++L +G+AVD+N+++ ERI+EE + +S Sbjct: 275 IADIALGFYILIFLFLYTSLGATLTLPGIAALILSVGMAVDANVIIFERIKEEIIEGKSA 334 Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508 +L GFS+A+STI DS +T +IA +VL+ FG G ++GFA+T+ L I++S+FTAI I + Sbjct: 335 KAALKNGFSKAFSTIMDSQVTTVIAGIVLYAFGTGPIKGFAVTLILGIIVSLFTAIVITK 394 Query: 509 AMMIFIIRYKKMKS---IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + ++ + +++ + I+ + + ++ + ISI +I I L F Sbjct: 395 FLFQNLLGFIDIQNTSLLGISKNKKTEIDIKDTKLKIVDKFKIFATISIAIAIIGIGLGF 454 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 G N GIDF GG + + ++ V+ + + +++ + + ++ + Sbjct: 455 AKGYNMGIDFTGGTTIDINLHKYVENNELLDIIKTYDTTASVDYLGEAKDKIQIKTTEK- 513 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 R+ K K + + + + +GP I +E+ K IV VII++I MLIYI Sbjct: 514 --MEESKRLEVFSKYKEKYSLKDTDLLQSGYIGPSIGKEIQSKAIVSVIIASIFMLIYIS 571 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 RFK+ F + AI LI D+ + +A+F + N VAA+LT++GYS+ND +VV+DR+R Sbjct: 572 FRFKFTFGISAIIALIHDVLIVISIYAIFRVPVNSPFVAAILTVVGYSINDTIVVFDRIR 631 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 +N KL+ + L D SI +T+ RS+ TS+ +S+L + + G I F P+ GI Sbjct: 632 ENAKLHPK-MDRMTLADVSIRQTVTRSINTSVTTLLSILMLYILGVDSIKEFTFPLLVGI 690 Query: 806 VVAASSSIFIAAPILLFIYDWRA 828 + SSIFIA+P+ + + Sbjct: 691 LSGTYSSIFIASPLWVLFEKIKE 713 Score = 64.7 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Query: 42 NRISLGLDLRGGSHLVLEVDED---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-K 97 RI+ GLDL+GG ++V E + D D + + + R + G+ + + + + Sbjct: 40 KRINQGLDLKGGVYVVYEAETDATGDELTKIINQTIEVFRKRIDGMGLTEPIIVRDGDKR 99 Query: 98 ITLSFADSRFKENIADKVTLFLQGVN 123 I + + + + Q Sbjct: 100 IRIELPGATNVNDAIQTIGKTAQLTF 125 >gi|314933801|ref|ZP_07841166.1| protein-export membrane protein SecDF [Staphylococcus caprae C87] gi|313653951|gb|EFS17708.1| protein-export membrane protein SecDF [Staphylococcus caprae C87] Length = 761 Score = 314 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 177/696 (25%), Positives = 321/696 (46%), Gaps = 24/696 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ A++ + + R++ +G+SE IQ +RI +QL G +D ++ R+LL T A Sbjct: 54 GEKIDKKALQATSRTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ + G + S T K +V Sbjct: 114 LTIRDAQDHVLMSGSDIKQGSAKQEFKQDQPTVTFKVKSKEKFKKVTEKISKKRDNVMVV 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + G ++ + IN +G ++ A + Sbjct: 174 WMDYKKGDS--YKKEAKKQQEGKDPKYVSAANVDQPINSDSVEISGGFNGKKGVKEAKQI 231 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AGSLP+ L + +VGA G D++ K A G+ +I LFM+ Y GLVA Sbjct: 232 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASFIGVGIIYLFMLGFYRLPGLVAI 291 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 292 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 351 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R ++ Sbjct: 352 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 411 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ K + D F++ + +SIL I Sbjct: 412 SLLVSSNFFKKKYWLFGVKKKDRHDINEGKDVHDLKTSFEKWNFVKLAKPLIALSILIVI 471 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + +L LN GIDF G + + N+ + V ++ + + Q Sbjct: 472 VGLFILSIFKLNLGIDFSSGTRADIETNQSLTQGKVEKAVKDVGLSPDQVQINGSGHKNA 531 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + ++ + +K + + V P I +EL + + +I+++I Sbjct: 532 TVQFKKNLSRAEDNKLSDKIKSEFGDT------PQINSVSPLIGQELAKNAMTALILASI 585 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L A+ L+ DI + F+LF +E +LT +AAVLT++GYS+ND + Sbjct: 586 GIIIYVSLRFEWRMGLSAVLALLHDIFIIVAVFSLFRLEVDLTFIAAVLTIVGYSINDTI 645 Query: 739 VVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ S D++++SI +T+ RS+ T + + V+ + ++G I Sbjct: 646 VTFDRVRENLHKVKVVTSPEQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILIFGAPTIF 705 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +F++ + G++ SS+FIA P+ + + K + Sbjct: 706 NFSLALLIGLISGVFSSVFIAVPLWGIMKKRQLKKS 741 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 77/178 (43%), Gaps = 4/178 (2%) Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 VG + ++ + K I I + +++ ++ L AI L I TL F Sbjct: 250 NSVGAQFGQDALDKTIFASFIGVGIIYLFMLGFYRLP-GLVAIIALTTYIYLTLVAFNFI 308 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 L +AA++ +G +V+ +++Y+R++ +++ + + K+ + Sbjct: 309 SGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI---GRTLKQAYSKANKSSFLTIFD 365 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++ I+ + +G S + FA + GI++ +++F++ +L + + Sbjct: 366 SNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLLSLLVSSNFFKKK 423 >gi|149198083|ref|ZP_01875130.1| protein-export membrane protein SECD [Lentisphaera araneosa HTCC2155] gi|149138685|gb|EDM27091.1| protein-export membrane protein SECD [Lentisphaera araneosa HTCC2155] Length = 903 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 208/710 (29%), Positives = 341/710 (48%), Gaps = 30/710 (4%) Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISESTIQRLGSHRIL 190 + E + + + AIE E++++RID G++E+ I+ + +L Sbjct: 168 GIDLKGGVEFIVAFDPDELKPEDGEAIEVRDKIVEVLKKRIDSKGVAEAEIRPFSDNTVL 227 Query: 191 IQLPGEQDPSR--LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR---------DSDGN 239 +++P D R + L+ A++ F + Sbjct: 228 VRVPVVNDAERNAVASLITRQAELQFRALHETRPNGPKQPEDIGYELVYSKADESGRPPE 287 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 L++ + E++G + + DP VV +F++ GA+ F EVT + K LA+VLD Sbjct: 288 VLLLKVEPEMTGKDIVKTSYGQDPDGGGWVVSKTFNQEGAKDFGEVTERFVQKRLAIVLD 347 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 G +AP I I G AQI G +IE A LA +L++GSLP+K+NI E A LG Sbjct: 348 GVCYSAPRIQAVINGGTAQIDGMDSIEEAAELALVLQSGSLPVKINIDGESRTDATLGES 407 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 SI G + G++ ++LFM+ Y GL A + +N++L + + GAT TLP IAG Sbjct: 408 SIKSGVMMTIIGVLGVMLFMMWWYKLPGLFAAIGLVINLVLLATSMMIYGATFTLPGIAG 467 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 I L +G+AVDSN+L+ ERIREE + + GF+RA++ IFD+N+T I+ ++L+ Sbjct: 468 IALTLGMAVDSNVLIFERIREELSTGRIADNATREGFARAFTAIFDANLTTFISALILYN 527 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539 FG G ++GFAIT+ + I+ +MFTAI + R ++ ++ I+ L Sbjct: 528 FGTGPIQGFAITLSIGIITTMFTAIFVSRIFFDWMNNGERGDKKVISGLGTSKKW----N 583 Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSNL 598 I F + R +S + SI L T G + +DF GG L + Sbjct: 584 INFWKNRKKAFLLSTILCGVSIVTLVTKGTDALSVDFTGGTALSYQVEGEAPDQEKIAAA 643 Query: 599 ESLQIGDISFQNF--------DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S ++ S + + + +V ++ K +E Sbjct: 644 LSSELKVKSPRIAYKTAVGAEGKSLELVFKDLPGEDADTFAKKVDALLNKIGSETGATFV 703 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 E +G + + K + ++ +A+ IYI RF+ FA+GAI L D +G Sbjct: 704 NNGGESIGGLVGEQFKSKALSAMLWVMVAIFIYITFRFESVFAIGAIAALAHDALIAVGI 763 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F L G + +L + AVLT++GYS+ND +VVYDR+R+ S ++++ +IN+ LG Sbjct: 764 FVLLGNQISLPIIGAVLTIMGYSLNDTIVVYDRIREKSGDIKKK-SIFEIVNTAINDMLG 822 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 R++ TS+ V+ + + GG + FA + GI V SSI++AAPI+ Sbjct: 823 RTIITSLTTLFVVIVLCLGGG--VQEFATVLTIGIGVGTFSSIYVAAPIV 870 Score = 139 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 86/213 (40%), Gaps = 4/213 (1%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G + + + + I + I+ G++ II + + Sbjct: 364 TAQIDGMDSIEEAAELALVLQSGSLPVKINIDGESRTDATLGESSIKSGVMMTIIGVLGV 423 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++++ +K L A L++++ ++G F L +A + +G +V+ V++ Sbjct: 424 MLFMMWWYKLP-GLFAAIGLVINLVLLATSMMIYGATFTLPGIAGIALTLGMAVDSNVLI 482 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 ++R+R+ + +T + + ++ FIS L + +G I FAI Sbjct: 483 FERIREEL---STGRIADNATREGFARAFTAIFDANLTTFISALILYNFGTGPIQGFAIT 539 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ GI+ ++IF++ ++ + + ++ Sbjct: 540 LSIGIITTMFTAIFVSRIFFDWMNNGERGDKKV 572 Score = 57.4 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 51/416 (12%), Positives = 116/416 (27%), Gaps = 26/416 (6%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF------LQMY 73 +P+F + ++ R + R+ LG+DL+GG ++ D D+ Sbjct: 142 FFGMPSFSNKKVVSRLQGEV-SGRLKLGIDLKGGVEFIVAFDPDELKPEDGEAIEVRDKI 200 Query: 74 SDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKEN--IADKVTLFLQGVNSKL---- 126 + L+ + +G+ +R N + + E +A +T + L Sbjct: 201 VEVLKKRIDSKGVAEAEIRPFSDNTVLVRVPVVNDAERNAVASLITRQAELQFRALHETR 260 Query: 127 ------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 D L+ + ++ + + Q D G S Sbjct: 261 PNGPKQPEDIGYELVYSKADESGRPPEVLLLKVEPEMTGKDIVKTSYGQDPDGGGWVVSK 320 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + ++ RL +L + N + G+ + ++ Sbjct: 321 TFNQEGAKDFGEVTERFVQKRLAIVLDGVCYSAPRIQAVINGGTAQIDGMDSIEEAAELA 380 Query: 241 YLVEDK-----VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 +++ + I G + V+ +G F G A Sbjct: 381 LVLQSGSLPVKINIDGESRTD-ATLGESSIKSGVMMTIIGVLGVMLFMMWWYKLPGLFAA 439 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 + L ++ + T G+ I+ + R Sbjct: 440 IGLVINLVLLATSMMIYGATFTLPGIAGIALTLGMAVDSNVLIFERIREELSTGRIADNA 499 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 T A L + +I+ G + F+I L++ + + + + + Sbjct: 500 TREGFARAFTAIFDANLTTFISALILYNFGTGPIQGFAITLSIGIITTMFTAIFVS 555 >gi|239927381|ref|ZP_04684334.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces ghanaensis ATCC 14672] Length = 772 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 195/704 (27%), Positives = 322/704 (45%), Gaps = 27/704 (3%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +I + + A ++++E++R R+D +G++E TI R G +RI+++LPG QDP Sbjct: 37 GTQIVLETRSTATAKADGEATDRTLEVLRGRVDALGVAEPTIVRSGENRIIVELPGVQDP 96 Query: 200 SRLRQLLGTTAKMSFHKV--LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257 + +LG TA++S H V S + R L D G + + Sbjct: 97 RKAADVLGRTAQLSVHAVLGAATESTEPEAKDERILADEAGERLRLSAASLTGKDVEGAD 156 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP---- 313 V + F + VL +I+ Sbjct: 157 AQFDQQSGAGWHVTVDFKDDKGWAKLTGEAACNPAGDPKRRIAIVLDNKIISSPQVDPSV 216 Query: 314 -------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 G QI+G+F+ + A LA ++ G+LP+ + VE+R VG LG+++I Sbjct: 217 SCGVGIAGGSTQITGSFSSDEARELALLVEGGALPVPVETVEQRTVGPTLGAEAIKSSAY 276 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 A G L LF+IV+Y G +A ++ +++ A L+ LGATLTLP +AG VL IG+ Sbjct: 277 AAALGTALTALFIIVVYRLMGFLATVALACYGVISYAALAGLGATLTLPGLAGFVLAIGM 336 Query: 427 AVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 AVD+N+LV ER REE R S +L GF A+S I DSNIT LIA +LF G Sbjct: 337 AVDANVLVFERAREEYGKRNRPSGRSALTAGFKGAFSAIADSNITTLIAAGLLFLLASGP 396 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLIPDCIAI 540 V+GF +T+ + ++ SM +A+ I R + F + + + + R Sbjct: 397 VKGFGVTLAIGVIASMISALVITRVLAEFAVERRWVHRRPQITGLASIGRVREYLTRRNP 456 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 Q MR + +S++ + + + GLN+G++F GG + + VD R L Sbjct: 457 QLMRRPRRWLLVSLVVLLVTGAGIAVRGLNFGVEFTGGRLIEYTTTKTVDPDRAREALAD 516 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 Q+ V + I ++ + E++GP Sbjct: 517 AGFPQAVVQSSGDNG-------LTVRTEELSNAEAVKVAEAIDQVGGGAEKVRDELIGPS 569 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 + EL R ++ + ++ A L+Y+ RF+W F A+ TL D+ G FA G + Sbjct: 570 LGDELRRNALIALGLALGAQLLYLAFRFRWMFGTSAVATLAHDVVILTGIFAWLGKPIDG 629 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 +AA+LT+IGYSVND VVV+DR+R+ + + +I +T+ R+V T + Sbjct: 630 VFLAALLTVIGYSVNDSVVVFDRVRE-LWTKDRKAPLAQSTNLAILQTVPRTVNTGIGVI 688 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + +A+ GG + FA+ + G++V SS+ A+P+ + + Sbjct: 689 FILAALALLGGDSLTDFALALLIGMLVGTYSSVLTASPLAIELD 732 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 2/179 (1%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VGP + E I+ + ++I + ++ A L + A Sbjct: 259 QRTVGPTLGAEAIKSSAYAAALGTALTALFIIVVYRL-MGFLATVALACYGVISYAALAG 317 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G L +A + IG +V+ V+V++R R+ S R + Sbjct: 318 LGATLTLPGLAGFVLAIGMAVDANVLVFERAREEYGK-RNRPSGRSALTAGFKGAFSAIA 376 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++ I+ + + + F + +A G++ + S++ I + F + R + R Sbjct: 377 DSNITTLIAAGLLFLLASGPVKGFGVTLAIGVIASMISALVITRVLAEFAVERRWVHRR 435 Score = 84.0 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 66/470 (14%), Positives = 135/470 (28%), Gaps = 34/470 (7%) Query: 1 MRNN-PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + + + + L I + + LGLDLRGG+ +VLE Sbjct: 1 MKRPARFRALFALAVMAVSLYITV-----------------TVPVRLGLDLRGGTQIVLE 43 Query: 60 ---VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKV 115 + LR + G+ ++ R +N+I + + AD + Sbjct: 44 TRSTATAKADGEATDRTLEVLRGRVDALGVAEPTIVRSGENRIIVELPGVQDPRKAADVL 103 Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 Q + ++ ++ I + + + + +E + DQ Sbjct: 104 GRTAQLSVHAVLGAATESTEPEAKDERILADEAGERLRLSAASLTGKDVEGADAQFDQQS 163 Query: 176 ISESTIQRLGSHRILIQL-------PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228 + + DP R ++ +S +V P+ S + Sbjct: 164 GAGWHVTVDFKDDKGWAKLTGEAACNPAGDPKRRIAIVLDNKIISSPQVDPSVSCGVGIA 223 Query: 229 GVRFLRDSDGNQYLVEDKVEI-SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 G + + + G L + +T P + + A T Sbjct: 224 GGSTQITGSFSSDEARELALLVEGGALPVPVETVEQRTVGPTLGAEAIKSSAYAAALGTA 283 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 + V L + A ++G T LA + A + + N++ Sbjct: 284 LTALFIIVVYRLMGFLATVALACYGVISYAALAGLGATLTLPGLAGFVLAIGMAVDANVL 343 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 + G + G A+ AG + + + L +L + Sbjct: 344 VFERAREEYGKRNRPSGRSALTAGFKGAFSAIA----DSNITTLIAAGLLFLLASGPVKG 399 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457 G TL + IA ++ + + ER R + S+ Sbjct: 400 FGVTLAIGVIASMISALVITRVLAEFAVERRWVHRRPQITGLASIGRVRE 449 >gi|205374311|ref|ZP_03227110.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus coahuilensis m4-4] Length = 754 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 198/703 (28%), Positives = 337/703 (47%), Gaps = 35/703 (4%) Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 S + D++ + + + +RI+ IG+SE IQ S+RI +QL G +D + R+LL Sbjct: 50 SLEDGDEITEKVVSDTATALDKRINVIGVSEPNIQIENSNRIRVQLAGVEDQAEARELLS 109 Query: 208 TTAKMSFHKVLPNNSKKGFMF---GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 A ++F V G + DS N +V ++ + Sbjct: 110 AQANLTFRDVNDEVKLSGKDIKAGSATQVFDSQTNNPIVSVELNDQKKFYEVTQEIYANY 169 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 + +V E G E T+ ++AP +N+ I S QI GNFT Sbjct: 170 PNNQLVIWMDFEEGDSYAAEATKAEPK----------FISAPNVNEPINSSTVQIEGNFT 219 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 ++ A LA +L AGSLP+KL + +VGA G ++ + A + G+ L+ LFM+V Y Sbjct: 220 LDEAKNLAELLNAGSLPVKLEEIYSTSVGASFGEKALNETIFAGMIGIALVFLFMLVFYR 279 Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444 GLVA ++ + L L + + LTLP IA ++LG+G+AVD+NI+ ERI+EE + Sbjct: 280 LPGLVAVITLSTYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKI 339 Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504 + V + +G ++ TI D+NIT L+A +VLF FG +V+GFA + +SIL+S TA+ Sbjct: 340 GRPVEGAFQVGNKNSFMTILDANITTLLAGIVLFSFGTSSVKGFATMLIVSILLSFITAV 399 Query: 505 SIVRAMMIFIIRYKKMKSID-------------INPLSRFFLIPDCIAIQFMRARFWGVG 551 R ++ +++ + L L F+ R Sbjct: 400 WGSRILLGLLVKSNLLNGKPGLLGVKKEEIRPISEGLDPLDLTTKFDRFDFVAKRKLFFS 459 Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611 IS + + +LF LN GIDF G ++ +L+ + ++ LES+ + + Sbjct: 460 ISTILIAAGLVILFIFKLNLGIDFASGTRMEILSENGLSQQELKEELESIGMESDNIVIS 519 Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + V + K+ + V P I +EL R + Sbjct: 520 GEQNEIGVVRYTDDLGQSDINELKSHFKEIYGAE------PSISTVSPVIGKELARNALY 573 Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731 V I++I +++Y+ +RF+ A+ AI L+ D + FF+L +E ++T +AAVLT++G Sbjct: 574 AVAIASIGIILYVTVRFEIRMAVAAIVALLHDAFFIIAFFSLTRLEVDITFIAAVLTIVG 633 Query: 732 YSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 YS+ND +V +DR+R+N++ + ++++ S+ +TL RSV T + +V+ + + Sbjct: 634 YSINDTIVTFDRIRENLQKKKKLKSNEDIAEVVNASLRQTLARSVATVITVVFAVVALML 693 Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +G S I +F+I + G+V SS+FIAA + + K Sbjct: 694 FGSSSISNFSIALLVGLVSGTYSSVFIAAQLWYVLKCQELKKK 736 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 29/259 (11%), Positives = 90/259 (34%), Gaps = 9/259 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 + + + + + E I + + + ++ Sbjct: 169 YPNNQLVIWMDFEEGDSYAAEATKAEPKFISAPNVNEPINSSTVQIEGNFTLDEAKNLAE 228 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693 +L + + VG + + + I +I + +++ + ++ Sbjct: 229 LLNA-----GSLPVKLEEIYSTSVGASFGEKALNETIFAGMIGIALVFLFMLVFYRLP-G 282 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 L A+ TL I L F L +AA++ +G +V+ ++ Y+R+++ +K+ Sbjct: 283 LVAVITLSTYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKI--- 339 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 + + ++ ++ + + +G S + FA + I+++ +++ Sbjct: 340 GRPVEGAFQVGNKNSFMTILDANITTLLAGIVLFSFGTSSVKGFATMLIVSILLSFITAV 399 Query: 814 FIAAPILLFIYDWRAKNAR 832 + + +L + N + Sbjct: 400 WGSRILLGLLVKSNLLNGK 418 Score = 71.6 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 90/748 (12%), Positives = 199/748 (26%), Gaps = 52/748 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60 + + + L I + + + + I LGLDL+GG ++ EV Sbjct: 3 KRSRIVAFLLVFIVLAATIGTTSSNILSN-------------IKLGLDLQGGFEVLYEVK 49 Query: 61 ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116 D D+ + + L + G+ +++ + N+I + A + + ++ Sbjct: 50 SLEDGDEITEKVVSDTATALDKRINVIGVSEPNIQIENSNRIRVQLAGVEDQAEARELLS 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 +N + K + + SQ N V +Q Sbjct: 110 AQANLTFRDVNDEVKLSGKDIKAGSATQVFDSQTNNPIVSVELNDQKKFYEV-------T 162 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 E + ++ E D +S V + F D Sbjct: 163 QEIYANYPNNQLVIWMDFEEGDSYAAEATKAEPKFISAPNVNEPINSSTVQIEGNFTLDE 222 Query: 237 DGNQYLV--EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 N + + + + + I +G F P Sbjct: 223 AKNLAELLNAGSLPVKLEEIYSTSVGASFGEKALNETIFAGMIGIALVFLFMLVFYRLPG 282 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 V + +I ++ + + A + + E + Sbjct: 283 LVAVITLSTYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKIGRP 342 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 G+ + + I + + + F +++ LLS + A Sbjct: 343 VEGAFQVGNKNSFMTILDANITTLLAGIVLFSFGTSSVKGFATMLIVSILLSFITAVWGS 402 Query: 415 PSIAGIVL---GIGLAVDSNILVNERIR--EENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 + G+++ + + E IR E + D A +F S T Sbjct: 403 RILLGLLVKSNLLNGKPGLLGVKKEEIRPISEGLDPLDLTTKFDRFDFVAKRKLFFSIST 462 Query: 470 ALIAT--VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR-------YKKM 520 LIA V+LF F FA + IL + ++ + I + Sbjct: 463 ILIAAGLVILFIFKLNLGIDFASGTRMEILSENGLSQQELKEELESIGMESDNIVISGEQ 522 Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580 I + + D ++ +G SI I Y + Sbjct: 523 NEIGVVRYTDDLGQSDINELKSHFKEIYGAEPSISTVSPVIGKELARNALYAVAIASIGI 582 Query: 581 L---GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637 + V + ++ + + L F E + + + Sbjct: 583 ILYVTVRFEIRMAVAAIVALLHDAFFIIAFFSLTRLEVDITFIAAVLTIVGYSINDTIVT 642 Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 + + +++ E + ++ L + V + + + F +I Sbjct: 643 FDRIRENLQKKKKLKSNEDIAEVVNASLRQTLARSVATVITVVFAVVAL---MLFGSSSI 699 Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAA 725 + + + L ++ +AA Sbjct: 700 SNFSIALLV-----GLVSGTYSSVFIAA 722 >gi|291435725|ref|ZP_06575115.1| translocase subunit secD/protein translocase subunit secF [Streptomyces ghanaensis ATCC 14672] gi|291338620|gb|EFE65576.1| translocase subunit secD/protein translocase subunit secF [Streptomyces ghanaensis ATCC 14672] Length = 777 Score = 313 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 195/704 (27%), Positives = 322/704 (45%), Gaps = 27/704 (3%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +I + + A ++++E++R R+D +G++E TI R G +RI+++LPG QDP Sbjct: 42 GTQIVLETRSTATAKADGEATDRTLEVLRGRVDALGVAEPTIVRSGENRIIVELPGVQDP 101 Query: 200 SRLRQLLGTTAKMSFHKV--LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257 + +LG TA++S H V S + R L D G + + Sbjct: 102 RKAADVLGRTAQLSVHAVLGAATESTEPEAKDERILADEAGERLRLSAASLTGKDVEGAD 161 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP---- 313 V + F + VL +I+ Sbjct: 162 AQFDQQSGAGWHVTVDFKDDKGWAKLTGEAACNPAGDPKRRIAIVLDNKIISSPQVDPSV 221 Query: 314 -------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 G QI+G+F+ + A LA ++ G+LP+ + VE+R VG LG+++I Sbjct: 222 SCGVGIAGGSTQITGSFSSDEARELALLVEGGALPVPVETVEQRTVGPTLGAEAIKSSAY 281 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 A G L LF+IV+Y G +A ++ +++ A L+ LGATLTLP +AG VL IG+ Sbjct: 282 AAALGTALTALFIIVVYRLMGFLATVALACYGVISYAALAGLGATLTLPGLAGFVLAIGM 341 Query: 427 AVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 AVD+N+LV ER REE R S +L GF A+S I DSNIT LIA +LF G Sbjct: 342 AVDANVLVFERAREEYGKRNRPSGRSALTAGFKGAFSAIADSNITTLIAAGLLFLLASGP 401 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLIPDCIAI 540 V+GF +T+ + ++ SM +A+ I R + F + + + + R Sbjct: 402 VKGFGVTLAIGVIASMISALVITRVLAEFAVERRWVHRRPQITGLASIGRVREYLTRRNP 461 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 Q MR + +S++ + + + GLN+G++F GG + + VD R L Sbjct: 462 QLMRRPRRWLLVSLVVLLVTGAGIAVRGLNFGVEFTGGRLIEYTTTKTVDPDRAREALAD 521 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 Q+ V + I ++ + E++GP Sbjct: 522 AGFPQAVVQSSGDNG-------LTVRTEELSNAEAVKVAEAIDQVGGGAEKVRDELIGPS 574 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 + EL R ++ + ++ A L+Y+ RF+W F A+ TL D+ G FA G + Sbjct: 575 LGDELRRNALIALGLALGAQLLYLAFRFRWMFGTSAVATLAHDVVILTGIFAWLGKPIDG 634 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 +AA+LT+IGYSVND VVV+DR+R+ + + +I +T+ R+V T + Sbjct: 635 VFLAALLTVIGYSVNDSVVVFDRVRE-LWTKDRKAPLAQSTNLAILQTVPRTVNTGIGVI 693 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + +A+ GG + FA+ + G++V SS+ A+P+ + + Sbjct: 694 FILAALALLGGDSLTDFALALLIGMLVGTYSSVLTASPLAIELD 737 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 2/179 (1%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VGP + E I+ + ++I + ++ A L + A Sbjct: 264 QRTVGPTLGAEAIKSSAYAAALGTALTALFIIVVYRL-MGFLATVALACYGVISYAALAG 322 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G L +A + IG +V+ V+V++R R+ S R + Sbjct: 323 LGATLTLPGLAGFVLAIGMAVDANVLVFERAREEYGK-RNRPSGRSALTAGFKGAFSAIA 381 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++ I+ + + + F + +A G++ + S++ I + F + R + R Sbjct: 382 DSNITTLIAAGLLFLLASGPVKGFGVTLAIGVIASMISALVITRVLAEFAVERRWVHRR 440 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 65/469 (13%), Positives = 134/469 (28%), Gaps = 34/469 (7%) Query: 2 RNN-PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59 + + + + + L I + + LGLDLRGG+ +VLE Sbjct: 7 KRPARFRALFALAVMAVSLYITV-----------------TVPVRLGLDLRGGTQIVLET 49 Query: 60 --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVT 116 + LR + G+ ++ R +N+I + + AD + Sbjct: 50 RSTATAKADGEATDRTLEVLRGRVDALGVAEPTIVRSGENRIIVELPGVQDPRKAADVLG 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 Q + ++ ++ I + + + + +E + DQ Sbjct: 110 RTAQLSVHAVLGAATESTEPEAKDERILADEAGERLRLSAASLTGKDVEGADAQFDQQSG 169 Query: 177 SESTIQRLGSHRILIQL-------PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 + + DP R ++ +S +V P+ S + G Sbjct: 170 AGWHVTVDFKDDKGWAKLTGEAACNPAGDPKRRIAIVLDNKIISSPQVDPSVSCGVGIAG 229 Query: 230 VRFLRDSDGNQYLVEDKVEI-SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + + + G L + +T P + + A T Sbjct: 230 GSTQITGSFSSDEARELALLVEGGALPVPVETVEQRTVGPTLGAEAIKSSAYAAALGTAL 289 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 + V L + A ++G T LA + A + + N++ Sbjct: 290 TALFIIVVYRLMGFLATVALACYGVISYAALAGLGATLTLPGLAGFVLAIGMAVDANVLV 349 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 + G + G A+ AG + + + L +L + Sbjct: 350 FERAREEYGKRNRPSGRSALTAGFKGAFSAIA----DSNITTLIAAGLLFLLASGPVKGF 405 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457 G TL + IA ++ + + ER R + S+ Sbjct: 406 GVTLAIGVIASMISALVITRVLAEFAVERRWVHRRPQITGLASIGRVRE 454 >gi|206969970|ref|ZP_03230924.1| protein-export membrane protein SecDF [Bacillus cereus AH1134] gi|206735658|gb|EDZ52826.1| protein-export membrane protein SecDF [Bacillus cereus AH1134] Length = 754 Score = 313 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 187/687 (27%), Positives = 324/687 (47%), Gaps = 23/687 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ A + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE + +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T L A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + V +S V + + L I + Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +TLGRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIY 824 + + G++V SS+F+A+ I L + Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLE 732 Score = 61.2 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62 ++ G++ A + ISLGLDLRGG ++ EV Sbjct: 7 RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53 Query: 63 --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D L L + + G+ +++ + Q++I + A + ++ + ++ Sbjct: 54 KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113 Query: 120 QGVNSKLNVD 129 + ++ + Sbjct: 114 KLTFRDVDDN 123 >gi|228993150|ref|ZP_04153072.1| Protein-export membrane protein SecDF [Bacillus pseudomycoides DSM 12442] gi|228766609|gb|EEM15250.1| Protein-export membrane protein SecDF [Bacillus pseudomycoides DSM 12442] Length = 754 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 181/690 (26%), Positives = 320/690 (46%), Gaps = 23/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++ + R++ +G+SE IQ G RI +QL G QD + R++L T AK Sbjct: 55 GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREILSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVNDNLLMDGADLKGGGAKQTFDEQGRPSVGLTLKSADKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + V + + GNFT+E+A L Sbjct: 175 MVIWLDFEEGKDSYKAEAAKPNPKFLSAATVNQVFNQAEVSI-----VGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ LI LFM+V Y GLVA Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGEQALQETIFASAIGIALIFLFMLVFYRLPGLVAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE R +S+ + Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT + A VLF +G +V+GFA ++ +SIL+ T + R ++ Sbjct: 350 YRAGNHRSLATILDANITTIAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-----------CIAIQFMRARFWGVGISILFSICS 560 +++ + + I I F+ S++ I Sbjct: 410 GLLVKSRYFDKKMSYFGVKQREIIPLSKGVEHAPTRFDRINFVNIGHKFFLFSVVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + + + V+ +L L+I + Sbjct: 470 AIILPIFKMNLGIDFASGTRMDLQSKQAISVDQVQKDLHELKIDVKKEDIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 530 AVRTIGVLSKDEIAKAKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVVFSVFRLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRIRDLKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ + G+VV SS+F+A+ I L + + R Sbjct: 706 SLALMVGLVVGTYSSVFVASQIWLMLENRR 735 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 81/186 (43%), Gaps = 4/186 (2%) Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + VG K + +++ I I + +++ + ++ L A+ L L I T Sbjct: 241 DLKEMYSTSVGAKFGEQALQETIFASAIGIALIFLFMLVFYRLP-GLVAVIMLGLYIFVT 299 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 L F L +AA++ +G +V+ ++ Y+R+++ +++ + +S + Sbjct: 300 LLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSAYRAGNH---R 356 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 +L + ++ + + V+G S + FA + I+V +++F +L + R Sbjct: 357 SLATILDANITTIAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLLGLLVKSR 416 Query: 828 AKNARI 833 + ++ Sbjct: 417 YFDKKM 422 Score = 62.0 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 20/136 (14%) Query: 1 MRNNPWLVILYSMICCI--GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58 M ++ + +I + G++ A + ISLGLDLRGG ++ Sbjct: 1 MAKRGTRIVAFFLIVLLIGGIIGATGKNIT-------------KGISLGLDLRGGFEILY 47 Query: 59 EVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIAD 113 EV D L L + + G+ +++ ++I + A + ++ + Sbjct: 48 EVKPAKKGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKARE 107 Query: 114 KVTLFLQGVNSKLNVD 129 ++ + +N + Sbjct: 108 ILSTQAKLTFRDVNDN 123 >gi|152976829|ref|YP_001376346.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025581|gb|ABS23351.1| protein-export membrane protein SecD [Bacillus cytotoxicus NVH 391-98] Length = 752 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 185/687 (26%), Positives = 326/687 (47%), Gaps = 23/687 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G +D + R++L T AK Sbjct: 55 GDKIDHDALVSTVGALNNRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKAREILSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + Q + + K P Sbjct: 115 LTFRDVNDNLLMDGADLKGGGAKQTFDEQGRPSVGLTLKSADKFREVTEKISKMPPPTNL 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + FE +D+ + A V + + + GNFT+E+A L Sbjct: 175 MVIWLD-----FEEGKDSYKAESTKPNPKFLSAATVNQVFNQTEVSIVGGNFTVESAKQL 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A V G+ LI LFM+V Y G +A Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEETIFASVIGIALIFLFMLVFYRLPGFIAV 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE R +S+ + Sbjct: 290 IMLGLYIFMTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+NIT L A VLF +G +V+GFA ++ +SI + T + R ++ Sbjct: 350 YRSGNHRSLATILDANITTLAAAGVLFVYGTSSVQGFATSLIVSIFVGFITNVFGTRFLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-----------CIAIQFMRARFWGVGISILFSICS 560 +++ + + I I F+ + SI+ I Sbjct: 410 GLLVKSRYFDKKPAYFGVKQKEIIPLSKGVEHAPTKFDRINFVSIGHKFLLFSIVVVIAG 469 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L LN GIDF G ++ + + + + +S V +L L+I + Sbjct: 470 AIILPIFKLNLGIDFASGTRMDLQSKQTISVSQVYKDLHELKIDVKEEDIVPTGDDNKGF 529 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G + T N V P I +E+ + + V+I++ + Sbjct: 530 AVRTIGVLSKEEIAKAKTFFH----DKYGTEPNVSTVSPTIGKEIAQNAFIAVLIASAVI 585 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +A+ A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 586 ILYVSIRFRFTYAVSAVAALLHDAFVMIVVFSIFRLEVDLTFIAAVLTIIGYSINDSIVT 645 Query: 741 YDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K S ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 646 FDRNRELYKQKKRIRDSKDLEEIVNASIRQTIGRSINTVLTVLFPVIALMIFGSESLRNF 705 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIY 824 + + G+VV SS+F+A+ I L + Sbjct: 706 SFALMIGLVVGTYSSVFVASQIWLMLE 732 Score = 58.5 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 18/133 (13%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ + +++ G++ A + ISLGLDLRGG ++ +V Sbjct: 4 RSTRIVAFFLTVLLIGGIIGATGKNIT-------------KGISLGLDLRGGFEILYQVK 50 Query: 62 E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116 D + L L + + G+ +++ ++I + A + ++ + ++ Sbjct: 51 PAKKGDKIDHDALVSTVGALNNRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKAREILS 110 Query: 117 LFLQGVNSKLNVD 129 + +N + Sbjct: 111 TQAKLTFRDVNDN 123 >gi|332287133|ref|YP_004422034.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila psittaci 6BC] gi|313847729|emb|CBY16719.1| putative protein export protein [Chlamydophila psittaci RD1] gi|325506649|gb|ADZ18287.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila psittaci 6BC] gi|328914374|gb|AEB55207.1| protein-export membrane protein SecD, putative [Chlamydophila psittaci 6BC] Length = 1404 Score = 312 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 187/838 (22%), Positives = 350/838 (41%), Gaps = 57/838 (6%) Query: 41 KNRISLGLDLRGGSHLVLEV---DEDDFVNGF-LQMYSDELRSFLKKEGIGVFSMRQIQN 96 + + LG+D GG + L + + SDEL + L + G+ +R+ + Sbjct: 576 DSVLRLGIDFIGGKQIRLAFKDHQGKQLTDKEGILKVSDELYARLNRLGVSEVEIRREGD 635 Query: 97 KITLSFADSRFK--ENIADKVTLFLQGVNSKL-NVDPKKNLLVTTTEKEISIVLSQNNID 153 + LS S E I + VN K + + + + + + D Sbjct: 636 NVHLSVPGSTKISSEEILGTSQMTFHVVNEKFSPYSALRYEVQRFLD---YLWFTAQSQD 692 Query: 154 QVISHAI-EQSMEIIRQRIDQI--GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 A+ + + I ++ + E+ + + E S L A Sbjct: 693 ATSPEAVNKLASYIFNNPDSRLPSSVQEAVAKLQQEGLAFPNMDSEISSSHLDTTYSMIA 752 Query: 211 KMSF--------HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 V N + G + G Y++ V+ +GI + Sbjct: 753 IEKDVEGKANPLMIVFRNYALDGASLKNIRPEFAVGEGYILNFSVKDTGIAQKAYDVSPR 812 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 H + G + V+ + + + A +A +SG Sbjct: 813 ESFHAWTSTYC--QEGISGTENGQYSSGRGWRMAVVLDGYVVSDPVLNAPLKDQASVSGK 870 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 F+ LA L++GS+ ++ E + +LG +G ++ GL ++++ M V Sbjct: 871 FSHREVNRLATDLKSGSMSFVPEVLSEEVISPELGKQQRTQGIISVCLGLAVLIILMSVY 930 Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 Y G++A ++ LN++L A L L A LTL +AGIVL +G+AVD+N+LV ERIREE Sbjct: 931 YKFGGVIASGAVILNLLLIWAALQYLDAPLTLTGLAGIVLAMGMAVDANVLVFERIREEY 990 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 ++S+ S++ G+ +A+ IFDSN+T ++A+++L G ++GFA+T+ L I SMFT Sbjct: 991 LLSRSLTQSVEAGYKKAFGAIFDSNLTTVLASLLLLVLDTGPIKGFALTLILGIFSSMFT 1050 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 A+ + + + + K+ + I R W + S++ C Sbjct: 1051 ALFMTKFFFMVWMN----KTQETQLHMMNKFIGIKHDFLKECKRLWMISGSVIALGCVAL 1106 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRP--VDLSVVRSNLES---------------LQIGD 605 G+DFKGG L + VD++ VRS L Sbjct: 1107 GFGAWNSVLGMDFKGGYALTLNIADQKSVDVTNVRSKLGDKFKQVGISPRDFRIKTFGSS 1166 Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVG 658 + + + + A L +V +++ + +N V Sbjct: 1167 DKIKIYFSQNALTRVQTPERPAMEATDPNLSIVMNLLSDTGIDISSENLKDVQNFWSKVS 1226 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG--- 715 + S ++ ++ + ++ + + +L+Y+ +RF+W +A AI LI D+ T Sbjct: 1227 GQFSNKMRQQACIALVGALLIILLYVSLRFEWRYAFSAICALIHDLLATCAVLVATHFFL 1286 Query: 716 --IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 I+ +L A+ A++T++GYS+N+ ++++DR+R++ + + LI+ ++ +TLGR+V Sbjct: 1287 QKIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFT-PMPILINDALQKTLGRTV 1345 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 T+ +L + GG I +FA M GI++ SS++IA P+LLF+ + Sbjct: 1346 MTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERKQ 1403 >gi|319651685|ref|ZP_08005812.1| preprotein translocase D and F [Bacillus sp. 2_A_57_CT2] gi|317396752|gb|EFV77463.1| preprotein translocase D and F [Bacillus sp. 2_A_57_CT2] Length = 754 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 194/701 (27%), Positives = 329/701 (46%), Gaps = 28/701 (3%) Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + +V + + E + +RI+ +G+SE IQ G RI +QL G D ++ R++L Sbjct: 48 VTPKDGQKVDKAVLASTAEALDRRINVLGVSEPNIQIEGDKRIRVQLAGVTDQNKAREIL 107 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 T A +SF V G + + K +S + + F T Sbjct: 108 STEANLSFRDVNDQLMMD----GSDLAENGAKQTFDENGKPSVS--LKLKSASKFKDVTQ 161 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 K V + + + + + + D + L+AP ++Q I GNFTIE Sbjct: 162 KIVNMGAPNNLLVIWLDFEEGQDTFQAESAKEDPKYLSAPQVSQVFNQDTVSIVGNFTIE 221 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A L+ +L AGSLP++L+ V +VGA G ++ A + G+ +I ++MI +Y Sbjct: 222 EAKTLSDLLNAGSLPVQLDEVYSTSVGAKFGEQAMETTILAGIIGIAIIFIYMIAVYRFP 281 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G +A ++ + L L + + LTLP IA ++LG+G+AVD+NI+ ERIREE + + Sbjct: 282 GFIATITLSFYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIREEIKVGR 341 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 ++ + G + STIFD+NIT ++A VLF +G +V+GFA + +SIL S TA+ Sbjct: 342 TIKSAFQAGEKNSLSTIFDANITTILAAAVLFMYGTSSVKGFATMLIISILASFITAVYG 401 Query: 507 VRAMMIFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGIS 553 R +M + K + L F+ R +S Sbjct: 402 TRLLMGLWVHSKALNKKPGWFGVKKSEIKNIAENYDTLDLPTKFDKFDFVGNRKKFFILS 461 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 + I ++ LN GIDF G ++ A+ P+ ++ L +L I Sbjct: 462 AVLIAVGIIVVSIFRLNLGIDFVSGTRIEQQASEPITKEKFQAELSALGIETDDIVISGD 521 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 K V V ++ + N V P + +EL + + + Sbjct: 522 NKEIGVARLKDVLTKDEIAEVKTHFHEEFGQG------PNVSTVSPTVGKELAKNALKAL 575 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 I+++ ++IY+ IRF+ A+ A+ L+ D + F+ +E ++T +AAVLT++GYS Sbjct: 576 AIASVGIIIYVTIRFEIKMAIPAVLALLHDAFFIIAVFSFTRLEVDITFIAAVLTVVGYS 635 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDL---IDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V +DRMR+NM+ SF D+ ++KS+ +TLGRSV T + +V+ + V+G Sbjct: 636 INDTIVTFDRMRENMQKKKKLKSFEDIADVVNKSLRQTLGRSVNTVLTVVFTVVALLVFG 695 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+ + G++ SSIF+AA I K Sbjct: 696 SESIRNFSFALLIGLIAGTYSSIFLAAQIWAVWKGKELKEK 736 Score = 99.0 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 63/150 (42%), Gaps = 4/150 (2%) Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 Y+ +++ A TL I L F L +AA++ +G +V+ ++ Y+ Sbjct: 273 YMIAVYRFP-GFIATITLSFYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYE 331 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ +K+ + + +L ++ ++ + ++G S + FA + Sbjct: 332 RIREEIKV---GRTIKSAFQAGEKNSLSTIFDANITTILAAAVLFMYGTSSVKGFATMLI 388 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 I+ + ++++ ++ +A N + Sbjct: 389 ISILASFITAVYGTRLLMGLWVHSKALNKK 418 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 17/132 (12%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60 + + + ++ L A N + I LGLDL+GG ++ +V Sbjct: 3 KRSRIVAFFLIVVLLGSLAGATTNNIL-------------KNIKLGLDLQGGFEVLYDVT 49 Query: 61 --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 D L ++ L + G+ +++ + +I + A + + ++ Sbjct: 50 PKDGQKVDKAVLASTAEALDRRINVLGVSEPNIQIEGDKRIRVQLAGVTDQNKAREILST 109 Query: 118 FLQGVNSKLNVD 129 +N Sbjct: 110 EANLSFRDVNDQ 121 >gi|171915958|ref|ZP_02931428.1| probable protein-export membrane protein [Verrucomicrobium spinosum DSM 4136] Length = 781 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 191/688 (27%), Positives = 339/688 (49%), Gaps = 31/688 (4%) Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLRQLLGTTAKM 212 + A++Q++ I+ +R++ G + G+ RILIQ+P + ++R+ + A + Sbjct: 83 LSPAAVQQAIGILEKRLNPDGGKDLLTAPQGTDRILIQMPGVHPDEVGKIRETIQKVAHL 142 Query: 213 SFHKVLPNNSKKGFMFGVRFLRD---------------SDGNQYLVEDKVEISGIHLNGA 257 F V P + YLV+ + ++ G H+ Sbjct: 143 EFRLVHPQGESALAQMKATGQPVIGYTELPGAKDKDGKREVASYLVKSRADLEGEHVVQ- 201 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 A V+ + D G++ F ++T +IG+ LA+++DG VL+AP + AI G A Sbjct: 202 -AWPALNPEGWVIHLKLDSAGSKIFADLTSAHIGENLAIIVDGEVLSAPTLRSAITGGNA 260 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 +ISG FT E A LA+ L L + I+EE NV A G +I +G +L+ L Sbjct: 261 EISGKFTQEEAQELASGL-ENPLKNPMKIIEESNVSAAFGEQTIQQGIQTGWVSTLLVAL 319 Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 FM++ Y GL+A + + ++L ++L TLT+P IAGIVL IG+AVD+N+L+ ER Sbjct: 320 FMLIYYRFAGLIALVGLVVCMLLVFGAMALFNFTLTMPGIAGIVLTIGMAVDANVLIYER 379 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 +REE +++ +LD F +A+S IFD+NIT LI+ V+LF+ G V+GFA+T+ + I+ Sbjct: 380 LREEMNAGKTLGAALDAAFEKAFSAIFDANITTLISAVILFYLATGLVKGFAVTLTVGIV 439 Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557 ++ A+ + R + I +K I + + + +G+ + + Sbjct: 440 GTLLGALIVTRVCFNWFIDANLLKKITVTHIIPEGKYDLLKWSKPFVLGSFGLALLSILV 499 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617 G + V A + V+ V L+ I Q Sbjct: 500 FPIKGTDAIGIDFRGGAIT---RFEVAAGKTVETEGVEKFLKESNIQGAFVQASSNATAN 556 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 L+ ++ + D +LE T+ VG + +EL + + ++ Sbjct: 557 LITVRSEYDDGPKVKEILESKYAGELSGG------QTDRVGSIVGKELATRSAIAYCLAM 610 Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737 +A+ IY+ I ++ FA+ AI L D +G LFG + ++ + A+LT+ GYS+ND Sbjct: 611 LAIFIYLVIFYELAFAVAAIVALFHDCVIAIGLSVLFGQQLSVIHIGAILTVAGYSINDT 670 Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 ++V+DR+R+ ++ T S RD+++++I+ TL R++ TS+ +S++ + +GG + F Sbjct: 671 IIVFDRIREMLR--THRGSIRDIMNEAISATLSRTLLTSLTVLMSMVVLFFFGGPSMKEF 728 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYD 825 A+P+ G+VV SSI+IA+ ++L+ Sbjct: 729 ALPIIIGVVVGTYSSIYIASSLVLWYGR 756 >gi|319400963|gb|EFV89182.1| protein-export membrane protein SecD [Staphylococcus epidermidis FRI909] Length = 763 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 177/697 (25%), Positives = 320/697 (45%), Gaps = 22/697 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G +D ++ R+LL T A Sbjct: 54 GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ + G + + + V Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + ++ + IN + +G +E A + Sbjct: 174 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 233 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AGSLP+ L + +VGA G D++ K A + G+ LI LFM+ Y GLVA Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 293 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM- 510 ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R + Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413 Query: 511 ------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558 KK + L + F++ + +SIL I Sbjct: 414 SLLVSSNLFKKQYWLFGVKKKNRHDINEGKDVHDLKTSYEKLNFVKLAKPLISLSILIVI 473 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + ++ LN GIDF G + + + + + V ++S + Q Sbjct: 474 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSAGLEPDQIQINGSGNKNA 533 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + ++ VK + + V P I +EL + + +I+++I Sbjct: 534 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 587 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND + Sbjct: 588 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRIEVDLTFIAAVLTIVGYSINDTI 647 Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ T + D++++SI +T+ RS+ T + + V+ + + G I Sbjct: 648 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVSILILGAPTIF 707 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +F++ + G++ SSIFIA P+ + K + Sbjct: 708 NFSLALLIGLLSGVFSSIFIAVPLWGMFKKRQFKKTK 744 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 14/121 (11%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65 + + I + LL ++++ ++LGLDL+GG ++ +VD D Sbjct: 7 IIAFILLVALLFTGMGMTYKNVV---------KNVNLGLDLQGGFEVLFQVDPLNKGDKI 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124 LQ S L + + G+ ++ N+I + A + + ++ Sbjct: 58 DKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117 Query: 125 K 125 Sbjct: 118 D 118 >gi|228999199|ref|ZP_04158780.1| Protein-export membrane protein SecDF [Bacillus mycoides Rock3-17] gi|229006746|ref|ZP_04164380.1| Protein-export membrane protein SecDF [Bacillus mycoides Rock1-4] gi|228754607|gb|EEM04018.1| Protein-export membrane protein SecDF [Bacillus mycoides Rock1-4] gi|228760544|gb|EEM09509.1| Protein-export membrane protein SecDF [Bacillus mycoides Rock3-17] Length = 753 Score = 311 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 181/690 (26%), Positives = 328/690 (47%), Gaps = 24/690 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A+ ++ + R++ +G+SE IQ G RI +QL G +D + R++L T AK Sbjct: 55 GDKIDHDALVSTVGALENRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKAREILSTQAK 114 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + + +Q + + + + Sbjct: 115 LTFRDVNDNLLMDGTDLKGGGAKQTFDDQGRPSVGLTLKSADKFRSVTEKILSMKPDNLM 174 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + + P + + GNFT+E+A L Sbjct: 175 VIWLDFEEGKDSYKAEAAKPNPKFLSAATVNQVFNQA------EVSITGGNFTVESAKQL 228 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 +++L AG+LP+ L + +VGA G ++ + A G+ +I LFM+V Y GLVA Sbjct: 229 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 288 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+ ER++EE R +S+ + Sbjct: 289 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSA 348 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TI D+N+T + A VLF +G +VRGFA ++ +SIL+ T + R ++ Sbjct: 349 YRAGNHRSLATILDANVTTIAAAGVLFAYGTSSVRGFATSLIVSILVGFLTNVFGTRFLL 408 Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560 +++ + K + + + +IP I F+ SI+ I Sbjct: 409 GLLVKSRYFDKKLSYFGVKQKEIIPLSKGVEHAPTRFDRINFVNIGHKFFLFSIVVVIAG 468 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 +L +N GIDF G ++ + + + + + V+ +L L+I + Sbjct: 469 AIILPIFKMNLGIDFASGTRMDLQSKQAISVDQVQKDLHELKIDVKKEDIVPTGDDNKGF 528 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G T N V P I +E+ R + V+I++ + Sbjct: 529 AVRTLGVLSKDEIAKAKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 584 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++Y+ IRF++ +AL A+ L+ D + F++F +E +LT +AAVLT+IGYS+ND +V Sbjct: 585 ILYVSIRFRFTYALSAVLALLHDAFVMIVVFSVFRLEVDLTFIAAVLTIIGYSINDSIVT 644 Query: 741 YDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR R+ K ++++ SI +T+GRS+ T + V+ + ++G + +F Sbjct: 645 FDRNRELYKQKKRIRDLKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 704 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ + G+VV SS+F+A+ I L + + R Sbjct: 705 SLALMVGLVVGTYSSVFVASQIWLMLENRR 734 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 80/186 (43%), Gaps = 4/186 (2%) Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + VG K ++ + + I I + +++ + ++ L A+ L L I T Sbjct: 240 DLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLP-GLVAVIMLGLYIFVT 298 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 L F L +AA++ +G +V+ ++ Y+R+++ +++ + +S + Sbjct: 299 LLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSAYRAGNH---R 355 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 +L + ++ + + +G S + FA + I+V +++F +L + R Sbjct: 356 SLATILDANVTTIAAAGVLFAYGTSSVRGFATSLIVSILVGFLTNVFGTRFLLGLLVKSR 415 Query: 828 AKNARI 833 + ++ Sbjct: 416 YFDKKL 421 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 31/277 (11%), Positives = 87/277 (31%), Gaps = 22/277 (7%) Query: 1 MRNNPWLVILYSMICCI--GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58 M ++ + +I + G++ A + ISLGLDLRGG ++ Sbjct: 1 MAKRGTRIVAFFLIVLLIGGIIGATGKNIT-------------KGISLGLDLRGGFEILY 47 Query: 59 EVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIAD 113 EV D + L L + + G+ +++ ++I + A + ++ + Sbjct: 48 EVKPAKKGDKIDHDALVSTVGALENRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKARE 107 Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 ++ + +N + + + + ++ + + Sbjct: 108 ILSTQAKLTFRDVNDNLLMDGTDLKGGGAK--QTFDDQGRPSVGLTLKSADKFRSVTEKI 165 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 + + + + + + + ++ + A ++ S G F V Sbjct: 166 LSMKPDNLMVIWLDFEEGKDSYKAEAAKPNPKFLSAATVNQVFNQAEVSITGGNFTVESA 225 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 + V++ ++ A F + + + Sbjct: 226 KQLSSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTI 262 >gi|62184819|ref|YP_219604.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila abortus S26/3] gi|62147886|emb|CAH63633.1| putative protein export protein [Chlamydophila abortus S26/3] Length = 1404 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 181/835 (21%), Positives = 338/835 (40%), Gaps = 51/835 (6%) Query: 41 KNRISLGLDLRGGSHLVLEV---DEDDFVNGF-LQMYSDELRSFLKKEGIGVFSMRQIQN 96 + + LG+D GG + L + + SDEL + L + G+ +R+ + Sbjct: 576 DSVLRLGIDFIGGKQIRLAFKDHQGKQLTDKEGILKVSDELYARLNRLGVSEVEIRREGD 635 Query: 97 KITLSFADSRFK--ENIADKVTLFLQGVNSKL-NVDPKKNLLVTTTEKEISIVLSQNNID 153 + LS S E I + VN K + + + SQ Sbjct: 636 NVHLSVPGSTKISSEEILGTSQMTFHVVNEKFSPYSALRYEVQRFLDYLWFTAQSQEATS 695 Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 + + + + E+ + ++ E S L A Sbjct: 696 PEAVNKLASDIFNNPDSRLPSSVQEAVAKLQQEGLAFPKMDNEIASSHLDTTYSMIAIEK 755 Query: 214 F--------HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 V N + G + G Y++ V+ +GI + Sbjct: 756 DVEGKANPLMIVFRNYALDGASLKNIRPEFAVGEGYILNFSVKDTGIAQKAHDVSPRESF 815 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 H + G + V+ + + + A +A +SG F+ Sbjct: 816 HAWTSTYC--QEGINGTANGQHSSGRGWRMAVVLDGYVVSDPVLNAPLKDQASVSGKFSH 873 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 LA L++GS+ ++ E + +LG +G ++ GL ++++ M V Y Sbjct: 874 REVHRLATDLKSGSMSFVPEVLSEEVISPELGKQQRTQGIISVCLGLAVLIILMSVYYKF 933 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A ++ LN++L A L L A LTL +AGIVL +G+AVD+N+LV ERIREE + Sbjct: 934 GGVIASGAVILNLLLIWAALQYLDAPLTLTGLAGIVLAMGMAVDANVLVFERIREEYLLS 993 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +S+ S++ G+ +A+ IFDSN+T ++A+++L G ++GFA+T+ L I SMFTA+ Sbjct: 994 RSLTQSVEAGYKKAFGAIFDSNLTTVLASLLLLVLDTGPIKGFALTLILGIFSSMFTALF 1053 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + + + + K+ + I R W V S++ C Sbjct: 1054 MTKFFFMVWMN----KTQETQLHMMNKFIGIKHDFLKECKRLWMVSGSVIALGCVALGFG 1109 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLS-----------------VVRSNLESLQIGDISF 608 G+DFKGG L + + R Sbjct: 1110 AWNSVVGMDFKGGYALTLNMADQTSVDVTKFRSTLGDKFKQVGISPRDFRIKTFGSSDKI 1169 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGPKI 661 + + + + + L +V +++ + ++ V + Sbjct: 1170 KIYFSQNALTRVQTPERPATDTADPNLSIVMHILSDTGIDISSESLKDVQNFWFKVSGQF 1229 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG-----I 716 S ++ ++ + ++ + +L+Y+ +RF+W +A AI LI D+ T I Sbjct: 1230 SNKMRQQAFIALMGALCIILLYVSLRFEWRYAFSAICALIHDLLATCAVLVATHFFLQKI 1289 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 + +L AV A++T++GYS+N+ ++++DR+R++ + + LI+ ++ +TLGR+V T+ Sbjct: 1290 QIDLQAVGALMTVLGYSLNNTLIIFDRIREDRQEKLFT-PMPILINDALQKTLGRTVMTT 1348 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +L + GG I +FA M GI++ SS++IA P+LLF+ + Sbjct: 1349 ATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERKQ 1403 >gi|73662431|ref|YP_301212.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494946|dbj|BAE18267.1| protein-export membrane protein SecDF [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 758 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 188/698 (26%), Positives = 326/698 (46%), Gaps = 31/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ ++RI +QL G ++ S+ R +L + A Sbjct: 54 GDKIDDKAVKATAKTLENRVNVLGVSEPKIQVEDNNRIRVQLAGVKNQSQARDILSSQAN 113 Query: 212 MSFHKVLPNNSKKG--FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ N G G T K + Sbjct: 114 LTIRDADDNVKLTGKDIQQGSAKQEFKQNTNQPAVTFKLKDSDKFKKVTEEISKKDENVM 173 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V E G E+ + + A +D IN +G +E A Sbjct: 174 VVWLDHEKGDTYHKEMDKKDPKYVSAASVD------KPINSDSVEISGGFNGEEGVEKAK 227 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L +GSLP+ L + +VGA G D++ K A G+ +I LFM+ Y GLV Sbjct: 228 QIADLLNSGSLPVDLKEIYSNSVGAQFGQDALDKTVLAAAIGIAVIYLFMLGFYRLPGLV 287 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E + +++ Sbjct: 288 AVIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELKIGRTLK 347 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TI D+ +T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 348 QAYKKANKSSFLTIVDAQLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRW 407 Query: 510 MMIFIIRYKKMKSIDI-------------NPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 ++ +I K + L I FM+ +G+S+L Sbjct: 408 LLSLLISSNFFKKSNWLFGVSKKNIHNANEEKEIHDLKTPYERIDFMKLAKPLLGLSVLI 467 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + +LF LN GIDF G ++ +N VD + V + LES + +KN Sbjct: 468 IVVGAIILFIFRLNLGIDFTSGTRVDFESNNKVDENKVTNTLESKGFKPDQVSLGENDKN 527 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 V+ ++ + V P I +EL + ++ +I + Sbjct: 528 ATVQFKHDLSKDEVSKIQDTV-------DQSFGNKPTVNTVSPVIGQELAKNAMLALIYA 580 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 AI ++IYI RF+W L ++ L+ D + F+LF IE ++T +AAVLT+IGYS+ND Sbjct: 581 AIGIIIYITFRFEWRMGLSSVLALLHDAFMIVAVFSLFRIEIDITFIAAVLTIIGYSIND 640 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N+ T + D++++SI +T+ RS+ T + I V+ + ++G Sbjct: 641 TIVTFDRVRENLHKVKVITKNEQIDDIVNRSIRQTMTRSINTVLTVLIVVIALLIFGAPS 700 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F++ + G++ SS+FIA P+ + + K + Sbjct: 701 IFNFSLALLIGLISGVFSSVFIAVPLWGIMKKRQLKKS 738 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 81/747 (10%), Positives = 202/747 (27%), Gaps = 50/747 (6%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + ++ + ++ + L A ++++ ++LGLDL+GG ++ +V Sbjct: 1 MKKSS-RIVAFILLVVL--LFAGMGLTYKNVV---------KDVNLGLDLQGGFEVLYQV 48 Query: 61 DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115 D D + ++ + L + + G+ ++ + N+I + A + + D + Sbjct: 49 DPLQKGDKIDDKAVKATAKTLENRVNVLGVSEPKIQVEDNNRIRVQLAGVKNQSQARDIL 108 Query: 116 TLFLQGVNSKLNVDPKKNL--LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 + + + K + + K+ + ++ ++ + + Sbjct: 109 SSQANLTIRDADDNVKLTGKDIQQGSAKQEFKQNTNQPAVTFKLKDSDKFKKVTEEISKK 168 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 + ++DP + + K + + GV Sbjct: 169 DENVMVVWLDHEKGDTYHKEMDKKDPKYVSAA--SVDKPINSDSVEISGGFNGEEGVEKA 226 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG-------ARRFFEVT 286 + V++ I+ N A F V + + Sbjct: 227 KQIADLLNSGSLPVDLKEIYSNSVGAQFGQDALDKTVLAAAIGIAVIYLFMLGFYRLPGL 286 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 I + L +P A + G A I+ L I + Sbjct: 287 VAVIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELKIGRTL 346 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 + +I V ++ F + + I + + + L Sbjct: 347 KQAYKKANKSSFLTIVDAQLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSR 406 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 L + L + + NI +E + A + S Sbjct: 407 WLLSLLISSNFFKKSNWLFGVSKKNIHNANEEKEIHDLKTPYER--IDFMKLAKPLLGLS 464 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSI----------LISMFTAISIVRAMMIFIIR 516 + ++ ++LF F F + + + + + Sbjct: 465 VLIIVVGAIILFIFRLNLGIDFTSGTRVDFESNNKVDENKVTNTLESKGFKPDQVSLGEN 524 Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576 K + LS+ + + V + Sbjct: 525 DKNATVQFKHDLSKDEVSKIQDTVDQSFGNKPTVNTVSPVIGQELAK-NAMLALIYAAIG 583 Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 I + + LS V + L + F F E + + + Sbjct: 584 IIIYITFRFEWRMGLSSVLALLHDAFMIVAVFSLFRIEIDITFIAAVLTIIGYSINDTIV 643 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIR------KGIVGVIISAIAMLIYIW---IR 687 + + + I E + ++R + + ++ V+I IA+LI+ Sbjct: 644 TFDRVRENLHKVKVITKNEQIDDIVNRSIRQTMTRSINTVLTVLIVVIALLIFGAPSIFN 703 Query: 688 FKWYFALGAITTLILDITKTLGFFALF 714 F +G I+ + + + + + Sbjct: 704 FSLALLIGLISGVFSSVFIAVPLWGIM 730 >gi|331083065|ref|ZP_08332182.1| hypothetical protein HMPREF0992_01106 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405067|gb|EGG84604.1| hypothetical protein HMPREF0992_01106 [Lachnospiraceae bacterium 6_1_63FAA] Length = 745 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 191/719 (26%), Positives = 328/719 (45%), Gaps = 11/719 (1%) Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 KN+ + + + + + ++ +++R++ E+ + Sbjct: 28 FGPTGTGAAKNIKTGLDLSGGVSITYEASKESPTEDEMADTIYKLQKRVENYST-EAQVY 86 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + G +RI++++PG +D +++ + LG + F K + + + Sbjct: 87 KEGENRIIVEIPGAKDANKILEELGKPGSLYFIKHKDSAGGENYTLNTETGEYELAKTIE 146 Query: 243 ---VEDKVEISGIHLNGATANFDPK---THKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + ++G + A A + VV +SF + G +F T++ + Sbjct: 147 EIEADGGIVLTGTDIKDAKAAVAQDDLKNNVNVVSLSFTKEGTDKFAAATKEAVEAGNDT 206 Query: 297 ---VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 DG ++ P + Q I G+AQI G A LA+ +R G L ++L+ + V Sbjct: 207 IGIYYDGAFVSVPSVRQEIKDGQAQIDGMKDAAEAENLASTIRIGGLKLELSELRSSVVA 266 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 A LG +I A GL LI+LFMI +Y GLV+ ++ + V L L L+ TLT Sbjct: 267 AQLGEKAISTSLVAAAIGLALIILFMIFVYRIPGLVSGIALIIYVCLDLIALNAFDLTLT 326 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 L IAGI+L IG+AVD+N+++ RI+EE +SV +L GF +A+S IFD NIT LIA Sbjct: 327 LQGIAGIILSIGMAVDANVIIYARIQEEIASGKSVRTALQNGFKKAFSAIFDGNITTLIA 386 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 VL + G G V+GFA T+ L I++SMFTA+ + + +M + Sbjct: 387 AFVLNWLGSGTVKGFAQTLALGIVLSMFTALVVSKYLMYAVYAVGVRNEKFYGKRKERKP 446 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 IP + A + + S+ L Y ++FKGG V ++ + ++ Sbjct: 447 IPFLQKRKVFFAVSLILILCAPVSMLIFKGTTGESLKYSLEFKGGTSTNVEFDKDMSIAE 506 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + L L +N K ++ + ++ I Sbjct: 507 IDEKLTPLVEEVTGDKNVQATKVVGNNQVIIKTRTLNVEQREKLETALIDNFGVAQEDIT 566 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712 +E + +S E+ + VI++ + ML+YIW RFK FA A+ L+ D+ L F+A Sbjct: 567 SESISSTVSNEMRADAVKAVIVATVLMLLYIWFRFKDIRFASSAVIALLHDVLVVLAFYA 626 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 + + T +A +LT++GYS+N +V++DR+R+N+ L++ SI +TL RS Sbjct: 627 VARVSVGNTFIACMLTIVGYSINATIVIFDRIRENLASAGKKTDLETLVNASITQTLTRS 686 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +YTS+ FI V + + G S I FA+P+ GIV SS+ I + + K Sbjct: 687 IYTSLTTFIMVFLLFIMGVSSIREFALPLMVGIVCGGYSSVCITGALWYVMKKKFKKQN 745 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 85/218 (38%), Gaps = 4/218 (1%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 + G A +I + + + +V ++ + I +V Sbjct: 223 QEIKDGQAQIDGMKDAAEAENLASTIRIGGLKLELSELRSSVVAAQLGEKAISTSLVAAA 282 Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 I +++++ ++ L + LI+ + L F + L +A ++ IG +V Sbjct: 283 IGLALIILFMIFVYRIP-GLVSGIALIIYVCLDLIALNAFDLTLTLQGIAGIILSIGMAV 341 Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 + V++Y R+++ + + S R + + ++ I+ + G + Sbjct: 342 DANVIIYARIQEEIA---SGKSVRTALQNGFKKAFSAIFDGNITTLIAAFVLNWLGSGTV 398 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 FA +A GIV++ +++ ++ ++ +Y +N + Sbjct: 399 KGFAQTLALGIVLSMFTALVVSKYLMYAVYAVGVRNEK 436 Score = 65.5 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 9/119 (7%) Query: 1 MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58 M+ N +++L ++I + F P I GLDL GG + Sbjct: 1 MKKNRGILVLVLTAIITGFLIFTTAVGFGPTGTGAA-------KNIKTGLDLSGGVSITY 53 Query: 59 EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 E ++ + +L+ ++ ++ +N+I + ++ I +++ Sbjct: 54 EASKESPTEDEMADTIYKLQKRVENYSTEAQVYKEGENRIIVEIPGAKDANKILEELGK 112 >gi|329942498|ref|ZP_08291308.1| protein-export membrane protein SecD [Chlamydophila psittaci Cal10] gi|328815408|gb|EGF85396.1| protein-export membrane protein SecD [Chlamydophila psittaci Cal10] Length = 1131 Score = 310 bits (792), Expect = 9e-82, Method: Composition-based stats. Identities = 186/835 (22%), Positives = 345/835 (41%), Gaps = 51/835 (6%) Query: 41 KNRISLGLDLRGGSHLVLEV---DEDDFVNGF-LQMYSDELRSFLKKEGIGVFSMRQIQN 96 + + LG+D GG + L + + SDEL + L + G+ +R+ + Sbjct: 303 DSVLRLGIDFIGGKQIRLAFKDHQGKQLTDKEGILKVSDELYARLNRLGVSEVEIRREGD 362 Query: 97 KITLSFADSRFK--ENIADKVTLFLQGVNSKL-NVDPKKNLLVTTTEKEISIVLSQNNID 153 + LS S E I + VN K + + + SQ+ Sbjct: 363 NVHLSVPGSTKISSEEILGTSQMTFHVVNEKFSPYSALRYEVQRFLDYLWFTAQSQDATS 422 Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 + + + + E+ + + E S L A Sbjct: 423 PEAVNKLASYIFNNPDSRLPSSVQEAVAKLQQEGLAFPNMDSEISSSHLDTTYSMIAIEK 482 Query: 214 F--------HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 V N + G + G Y++ V+ +GI + Sbjct: 483 DVEGKANPLMIVFRNYALDGASLKNIRPEFAVGEGYILNFSVKDTGIAQKAYDVSPRESF 542 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 H + G + V+ + + + A +A +SG F+ Sbjct: 543 HAWTSTYC--QEGISGTENGQYSSGRGWRMAVVLDGYVVSDPVLNAPLKDQASVSGKFSH 600 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 LA L++GS+ ++ E + +LG +G ++ GL ++++ M V Y Sbjct: 601 REVNRLATDLKSGSMSFVPEVLSEEVISPELGKQQRTQGIISVCLGLAVLIILMSVYYKF 660 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A ++ LN++L A L L A LTL +AGIVL +G+AVD+N+LV ERIREE + Sbjct: 661 GGVIASGAVILNLLLIWAALQYLDAPLTLTGLAGIVLAMGMAVDANVLVFERIREEYLLS 720 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +S+ S++ G+ +A+ IFDSN+T ++A+++L G ++GFA+T+ L I SMFTA+ Sbjct: 721 RSLTQSVEAGYKKAFGAIFDSNLTTVLASLLLLVLDTGPIKGFALTLILGIFSSMFTALF 780 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + + + + K+ + I R W + S++ C Sbjct: 781 MTKFFFMVWMN----KTQETQLHMMNKFIGIKHDFLKECKRLWMISGSVIALGCVALGFG 836 Query: 566 THGLNYGIDFKGGIQLGVLANRP--VDLSVVRSNLES---------------LQIGDISF 608 G+DFKGG L + VD++ VRS L Sbjct: 837 AWNSVLGMDFKGGYALTLNIADQKSVDVTNVRSKLGDKFKQVGISPRDFRIKTFGSSDKI 896 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGPKI 661 + + + + A L +V +++ + +N V + Sbjct: 897 KIYFSQNALTRVQTPERPAMEATDPNLSIVMNLLSDTGIDISSENLKDVQNFWSKVSGQF 956 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG-----I 716 S ++ ++ + ++ + + +L+Y+ +RF+W +A AI LI D+ T I Sbjct: 957 SNKMRQQACIALVGALLIILLYVSLRFEWRYAFSAICALIHDLLATCAVLVATHFFLQKI 1016 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 + +L A+ A++T++GYS+N+ ++++DR+R++ + + LI+ ++ +TLGR+V T+ Sbjct: 1017 QIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFT-PMPILINDALQKTLGRTVMTT 1075 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +L + GG I +FA M GI++ SS++IA P+LLF+ + Sbjct: 1076 ATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERKQ 1130 >gi|260589633|ref|ZP_05855546.1| protein-export membrane protein SecD [Blautia hansenii DSM 20583] gi|260539873|gb|EEX20442.1| protein-export membrane protein SecD [Blautia hansenii DSM 20583] Length = 745 Score = 310 bits (792), Expect = 9e-82, Method: Composition-based stats. Identities = 191/719 (26%), Positives = 329/719 (45%), Gaps = 11/719 (1%) Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + KN+ + + + + + ++ +++R++ E+ + Sbjct: 28 FGPTSTGAAKNIKTGLDLSGGVSITYEASKESPTEDEMADTIYKLQKRVENYST-EAQVY 86 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + G +RI++++PG +D +++ + LG + F K + + + Sbjct: 87 KEGENRIIVEIPGAKDANKILEELGKPGSLYFIKHKDSAGGENYTLNTETGEYELAKTIE 146 Query: 243 ---VEDKVEISGIHLNGATANFDPK---THKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + ++G + A A + VV +SF + G +F T++ + Sbjct: 147 EIEADGGIVLTGTDIKDAKAAVAQDDLKNNVNVVSLSFTKEGTGKFAAATKEAVEAGNDT 206 Query: 297 ---VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 DG ++ P + Q I G+AQI G A LA+ +R G L ++L+ + V Sbjct: 207 IGIYYDGAFVSVPSVRQEIKDGQAQIDGMKDAAEAENLASTIRIGGLKLELSELRSSVVA 266 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 A LG +I A GL LI+LFMI +Y GLV+ ++ + V L L L+ TLT Sbjct: 267 AQLGEKAISTSLVAAAIGLALIILFMIFVYRIPGLVSGIALIIYVCLDLIALNAFDLTLT 326 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 L IAGI+L IG+AVD+N+++ RI+EE +SV +L GF +A+S IFD NIT LIA Sbjct: 327 LQGIAGIILSIGMAVDANVIIYARIQEEIASGKSVRTALQNGFKKAFSAIFDGNITTLIA 386 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 VL + G G V+GFA T+ L I++SMFTA+ + + +M + Sbjct: 387 AFVLNWLGSGTVKGFAQTLALGIVLSMFTALVVSKYLMYAVYAVGVRNEKFYGKRKERKP 446 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 IP + A + + S+ L Y ++FKGG V ++ + ++ Sbjct: 447 IPFLQKRKVFFAVSLILILCAPVSMLIFKGTTGESLKYSLEFKGGTSTNVEFDKDMSIAE 506 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + L L +N K ++ + ++ I Sbjct: 507 IDEKLTPLVEEVTGDKNVQATKVVGNNQVIIKTRTLNVEQREKLETALIDNFGVAQEDIT 566 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712 +E + +S E+ + VI++ + ML+YIW RFK FA A+ L+ D+ L F+A Sbjct: 567 SESISSTVSNEMRADAVKAVIVATVLMLLYIWFRFKDIRFASSAVIALLHDVLVVLAFYA 626 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 + + T +A +LT++GYS+N +V++DR+R+N+ L++ SI +TL RS Sbjct: 627 VARVSVGNTFIACMLTIVGYSINATIVIFDRIRENLASAGKKTDLETLVNASITQTLTRS 686 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +YTS+ FI V + + G S I FA+P+ GIV SS+ I + + K Sbjct: 687 IYTSLTTFIMVFLLFIMGVSSIREFALPLMVGIVCGGYSSVCITGALWYVMKKKFKKQN 745 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 85/218 (38%), Gaps = 4/218 (1%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 + G A +I + + + +V ++ + I +V Sbjct: 223 QEIKDGQAQIDGMKDAAEAENLASTIRIGGLKLELSELRSSVVAAQLGEKAISTSLVAAA 282 Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 I +++++ ++ L + LI+ + L F + L +A ++ IG +V Sbjct: 283 IGLALIILFMIFVYRIP-GLVSGIALIIYVCLDLIALNAFDLTLTLQGIAGIILSIGMAV 341 Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 + V++Y R+++ + + S R + + ++ I+ + G + Sbjct: 342 DANVIIYARIQEEIA---SGKSVRTALQNGFKKAFSAIFDGNITTLIAAFVLNWLGSGTV 398 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 FA +A GIV++ +++ ++ ++ +Y +N + Sbjct: 399 KGFAQTLALGIVLSMFTALVVSKYLMYAVYAVGVRNEK 436 Score = 65.9 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 9/119 (7%) Query: 1 MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58 M+ N +++L ++I + F P S I GLDL GG + Sbjct: 1 MKKNRGILVLVLTAIITGFLIFTTAVGFGPTSTGAA-------KNIKTGLDLSGGVSITY 53 Query: 59 EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 E ++ + +L+ ++ ++ +N+I + ++ I +++ Sbjct: 54 EASKESPTEDEMADTIYKLQKRVENYSTEAQVYKEGENRIIVEIPGAKDANKILEELGK 112 >gi|225164351|ref|ZP_03726616.1| protein-export membrane protein SecD [Opitutaceae bacterium TAV2] gi|224801031|gb|EEG19362.1| protein-export membrane protein SecD [Opitutaceae bacterium TAV2] Length = 873 Score = 310 bits (792), Expect = 9e-82, Method: Composition-based stats. Identities = 208/855 (24%), Positives = 394/855 (46%), Gaps = 51/855 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 ++ N W +IL I P + A + ++++ Sbjct: 24 LKQNLWKLILSVAIAGWAAWTLFPLKDRKFETYVQTEATKETE------KAAAFRVLVDT 77 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFS----MRQIQNKITLSFADSRFKENIADKVT 116 + LRS ++ I + +R + + + ++ +++ + Sbjct: 78 AIKRHAEHQSPSFFSALRSVANEQKIDLSQYFPGIRLESSLVNIEKRNNILLDHLLKESK 137 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L +D K + T E ++ + + + +++EI+ RI+ +G+ Sbjct: 138 SKLQ-----LGLDLKGGVAFTLEVDESALKQTAES---ERGSKLSKAIEILDTRINGLGV 189 Query: 177 SESTIQRLGSHRILIQLPGE--QDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-------- 226 +E I+ +G RI +QL G +D + + A + F V P + Sbjct: 190 TEPIIRAVGDRRIEVQLAGVNTRDNPEVVDSVKKPALLEFRTVHPTLTPGPGVETPVGYE 249 Query: 227 --MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284 + V+ + +++G ++ A A D + + ++F++ G++RF Sbjct: 250 ILPLEHDDRGKLQIEEVFVKQRPDMTGDGVSNAAAVIDEYG-RFQIALNFNDAGSKRFAA 308 Query: 285 VTRDNIGKPLAVVL--------DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 VTR+ DG++ +AP + + I G+A ISG+FT A LA +L Sbjct: 309 VTREIAANGQRSGRLGRLAIVLDGKLYSAPTVKEEISGGRASISGSFTQRQAIELANVLN 368 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 L + + + E+ VG L D+I G A + G+VL+ FMI Y G+VA FS+ Sbjct: 369 -NPLDLPMQVKEQYEVGPSLAQDAIDSGVRASIIGVVLVAAFMITFYTIGGVVAIFSLAF 427 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 N+++ ++ LGATLTLP +AGIVL IG+AVD+NIL+ ER+REE + +++ + GF Sbjct: 428 NILIIFGTMASLGATLTLPGLAGIVLTIGMAVDANILIFERMREELKVGKTLASANRNGF 487 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 +A STI D++ L+ ++ + G G ++GF +T+ + ++ ++ + + +M ++ Sbjct: 488 YKALSTILDAHFVQLLICAIMIWLGTGPIKGFGVTLAIGVISTLISVLITAHFVMEVLVD 547 Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDF 575 +K + + I I + F++ S L + +C++ G N YGIDF Sbjct: 548 GGIIKRLPMG------RIIKDIHVDFVKYGKAAFIASWLVVLGGLCVIIYKGQNIYGIDF 601 Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635 GG + + +D +R + G++ + L L+ + Sbjct: 602 VGGDVISAKFTQKIDAKEIREVASQIGTGEVVPTYVAALGSGLETLKI-ETGEGKSDELF 660 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 ++KK + T +G I E+ + ++ ++ S L+YI RF++ F +G Sbjct: 661 TALQKKYPQAGLE--KIGTNHLGASIGAEIKKNALIAILASMAVTLLYIAFRFEFGFGIG 718 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 A+ + + DI T+G F LFG F+ VAA+L + GYS+N+ VVV+DR+R+ +KL Sbjct: 719 AMFSSLHDILMTVGIFVLFGHHFSAPMVAAILAIAGYSINETVVVFDRIREELKLNPNGK 778 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 RD+++ +I++ R++ TS F++ L + ++GG V+ A GI+ + S+IFI Sbjct: 779 -LRDIVNDAISKVFARTIMTSTTTFLAALSLFLFGGGVLEDIAFTFLVGILTSTFSAIFI 837 Query: 816 AAPILLFIYDWRAKN 830 ++ + + + KN Sbjct: 838 SSQVFYWWHKGDRKN 852 >gi|167758793|ref|ZP_02430920.1| hypothetical protein CLOSCI_01135 [Clostridium scindens ATCC 35704] gi|167663533|gb|EDS07663.1| hypothetical protein CLOSCI_01135 [Clostridium scindens ATCC 35704] Length = 724 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 196/692 (28%), Positives = 333/692 (48%), Gaps = 36/692 (5%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q D + ++ +++R++Q E+++ + G RI I++PG D + + Sbjct: 51 ITYQVKDDNPTEKEMSDTIYKLQKRVEQYST-EASVYQEGDDRINIEIPGVTDANAILDE 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG + F G + SD + + G Sbjct: 110 LGKPGSLEFRTED----------GETVITGSDVKTATAKAGEDDMG-------------N 146 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + V++S ++ G ++F + T N+GK ++++ DG +++P + AI G+A I+GNF+ Sbjct: 147 KEYSVELSLNKEGTKKFADATEANVGKTISIIYDGEAISSPRVQTAITGGQAYITGNFSY 206 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 + A LA+ +R G L ++L + VGA LG +I A GL ++ +FMI +Y Sbjct: 207 DEAENLASTIRIGGLKLELEELRSNVVGAQLGEQAISTSLKAGAIGLAIVFIFMIFVYYL 266 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 GL + ++ + L L +L+ TLTLP IAGI+L IG+AVD+N+++ R+REE + Sbjct: 267 PGLASSLALVIYTELVLLILNAFNVTLTLPGIAGIILSIGMAVDANVIIFARVREEMSRG 326 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +SV +L GF +A S I D NIT LIA VL+F G G V+GFA T+ + I++SMFTA+ Sbjct: 327 KSVKNALKTGFQKAMSAIVDGNITTLIAAAVLWFKGSGTVKGFAQTLAIGIIVSMFTALV 386 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 I R ++ K + + I F+ + W +S + + Sbjct: 387 ITRMIVYAFYAVGLRKEKLYYRAKK-----ERKTINFLGKKKWFFTVSTAVIAAGLIFMG 441 Query: 566 THG------LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 + Y ++F+GG V N + + + + N +K Sbjct: 442 VNSSKGNGAFAYSLEFEGGTSTNVTFNEDYTIEEIDKEIVPVVEKVTGDHNVQTQKVAGT 501 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 ++ + ++ + + E + +S E+ + +V VI++ I Sbjct: 502 NQVIIKTVTLELDQREKLNQAMADNFGVDESKITAENISSTVSNEMRQDAVVAVIVATIF 561 Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ML+YIW RFK FA A+T L+ D+ L F+A+ I T +A +LT++GYS+N + Sbjct: 562 MLLYIWFRFKDIRFATSAVTALLHDVLVVLAFYAVARISVGNTFIACMLTIVGYSINATI 621 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 V++DR+R+ + T S ++++KSI TL RS+YTS+ FI V + V G S I FA Sbjct: 622 VIFDRIREELHYQTKSTDLAEVVNKSITMTLTRSIYTSLTTFIMVAVLYVMGVSSIREFA 681 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 +P+ GIV A SS+ I + + K Sbjct: 682 LPLIVGIVCGAYSSVCITGALWYVMKTKTGKK 713 Score = 128 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 77/181 (42%), Gaps = 4/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +VG ++ + I + I + I++ + + L + L++ L Sbjct: 229 RSNVVGAQLGEQAISTSLKAGAIGLAIVFIFMIFVY-YLPGLASSLALVIYTELVLLILN 287 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + L +A ++ IG +V+ V+++ R+R+ M + S ++ + + + Sbjct: 288 AFNVTLTLPGIAGIILSIGMAVDANVIIFARVREEM---SRGKSVKNALKTGFQKAMSAI 344 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 V ++ I+ + G + FA +A GI+V+ +++ I I+ Y + + Sbjct: 345 VDGNITTLIAAAVLWFKGSGTVKGFAQTLAIGIIVSMFTALVITRMIVYAFYAVGLRKEK 404 Query: 833 I 833 + Sbjct: 405 L 405 Score = 63.9 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 52/156 (33%), Gaps = 2/156 (1%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 I LGLDL GG + +V +D+ + +L+ +++ ++ ++I + Sbjct: 37 KNIKLGLDLAGGVSITYQVKDDNPTEKEMSDTIYKLQKRVEQYSTEASVYQEGDDRINIE 96 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 I D++ D + + + + + + ++ S + Sbjct: 97 IPGVTDANAILDELGKPGSLEFRT--EDGETVITGSDVKTATAKAGEDDMGNKEYSVELS 154 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 + E ++ D + + I P Q Sbjct: 155 LNKEGTKKFADATEANVGKTISIIYDGEAISSPRVQ 190 >gi|261878954|ref|ZP_06005381.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270334409|gb|EFA45195.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 676 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 196/618 (31%), Positives = 330/618 (53%), Gaps = 30/618 (4%) Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + G + A+ F+ + +P V ++ + GARR+ E+T+ N+GK +A+VLDG Sbjct: 46 TTTGRAPLEGDVVTDASDQFNNMSGQPEVSMTMNSEGARRWAELTKANVGKAIAIVLDGV 105 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 V +AP +N I G++ ISGNFT+E LA L++G +P +IV+E VG LG+ SI Sbjct: 106 VYSAPRVNGEISGGQSSISGNFTVEDTKDLANTLKSGRMPAPAHIVQEEVVGPTLGAQSI 165 Query: 362 YKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 +G + + VL++++M+ +Y G +A ++ +NV TL +L+ A LT+ IAG+ Sbjct: 166 QQGVVSFIIAFVLLIIYMLAMYNIIPGSIAVGALIINVFFTLGILTSFQAALTMSGIAGM 225 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VL +G AVD+N+L+ ERI+EE R + + ++ G+S A+S IFDSN+T++I V+L+ F Sbjct: 226 VLSLGTAVDANVLIYERIKEELRGGKGMKQAISAGYSNAFSAIFDSNLTSIITGVILYVF 285 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G G +RGFA T + I S F+A+ + R + + + K ++ + Sbjct: 286 GTGPIRGFATTWIIGIACSFFSAVYLTRLVYEYKLNKDKWLNLKFWTGISKN-MMQDTNF 344 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 +FM ++I ++ I GL IDF GG + + + VR L Sbjct: 345 KFMSMYKKTFTVAIAAAVVFIGSFVVRGLAQSIDFTGGRNYVIAFEKNTEPEQVREVLVK 404 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI------------------ 642 G + G N +R+ + T V + V++ + Sbjct: 405 TFPGATTGALSLGTDNKTIRVSTNYKIESSSTTVDDEVEEMLYNGLKRAGLVTQNSVETF 464 Query: 643 --TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699 ++ +I ++ VGP +++++ I+ V+I+ IA+ +YI +RF+ F++G+ Sbjct: 465 KNPDVRQGGSIISSSKVGPSVAKDVTYGAIISVLIALIAIFLYILLRFRNVAFSVGSTVA 524 Query: 700 LILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 L LD +G F+L +E + T + AVLT+IGYS+NDKVVV+DR+R+N+KL+ Sbjct: 525 LTLDALTVIGLFSLLQGIMPFSLEVDQTFIGAVLTVIGYSINDKVVVFDRIRENLKLHPK 584 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 + L + SIN+TL R++ TS++ I +L + GG I FA M G++ SSI Sbjct: 585 -QDIQSLFNDSINQTLARTINTSLSTLIVLLCILFLGGKSIQPFAFAMTLGVIFGTLSSI 643 Query: 814 FIAAPILLFIYDWRAKNA 831 FIA+PI + + +N Sbjct: 644 FIASPIAYIVMGRKIQNQ 661 >gi|283795988|ref|ZP_06345141.1| putative protein-export membrane protein SecDF [Clostridium sp. M62/1] gi|291076634|gb|EFE13998.1| putative protein-export membrane protein SecDF [Clostridium sp. M62/1] Length = 730 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 181/587 (30%), Positives = 289/587 (49%), Gaps = 3/587 (0%) Query: 244 EDKVEISGIHLNGATANFDPKT--HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 E ++G ++ A A T + VV ++F E G + F + T + +GKP+ ++ D Sbjct: 116 EGTTILTGDQVSAAQAGMVDGTTGKEYVVSLTFTEEGTKAFADATTNGVGKPIYIIYDNE 175 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 V++APV+ +AI G+ I G + E A LA+ +R GSL ++L + VGA LG +I Sbjct: 176 VVSAPVVREAITGGQCTIDGMASFEEAENLASTIRIGSLSLELEELRSNVVGAKLGQQAI 235 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 A V G V++ +FMI +Y GL + ++ L V L L LL TLTLP +AGI+ Sbjct: 236 TTSLKAGVVGFVIVAVFMIAVYLIPGLASVIALCLYVGLILILLVSFNVTLTLPGVAGII 295 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IG+AVD+N+++ RI+EE +SV +++ GF +A S I D N+T LIA VLF+ G Sbjct: 296 LSIGMAVDANVIIFTRIKEEIGAGKSVKTAIENGFQKALSAIVDGNVTTLIAAAVLFWRG 355 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541 G VRGFA T+ + I++SMFTA+ + R + + P + Sbjct: 356 SGTVRGFASTLAIGIVLSMFTALFVTRFALNAMFAMGIQNPKFYGTKKEKPAKPFLKYRK 415 Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601 A + + LNY ++FKGG V N + + S + L Sbjct: 416 ICFALSLAAIAAGFVFMGINKSSTGDILNYSMEFKGGTSTNVTFNEEMSQERIESEVVPL 475 Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661 + ++ ++ K E + + Sbjct: 476 VEEITGDADVQTQRVSGSNEVIIKTRTLNMEEREAFEKAMEDSFGVEKEKITAESISGAV 535 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNL 720 S+E+ + V V+I+ I MLIYIW RFK FA ++ LI D+ + +A F Sbjct: 536 SQEMKQDAFVAVVIATICMLIYIWFRFKNIRFAASSVLALIHDVLVVIACYAAFKWPVGS 595 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 T +A +LT++GYS+N +V++DR+R+N+K + ++++ SI +T RSV TS+ F Sbjct: 596 TFIACILTIVGYSINATIVIFDRVRENLKEKRHDQTIEEIVNLSITQTFTRSVNTSLTTF 655 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + VL + + G S I FA+P+ GIV SS+ +A + + R Sbjct: 656 VMVLVLYIMGVSSIREFALPLMVGIVCGTYSSVCLAGSLWFEMNRRR 702 Score = 57.4 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 30/80 (37%) Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA 103 I LGLDL GG + + E++ ++ +L+ ++ ++ ++I + Sbjct: 33 IKLGLDLAGGVSITYQAKEENPSAEDMKDTIYKLQQRVQNYSTEAEVYQEGNDRINIDIP 92 Query: 104 DSRFKENIADKVTLFLQGVN 123 I ++ + Sbjct: 93 GVSDANAILAELGKPGSLIF 112 >gi|46445885|ref|YP_007250.1| putative fusion protein export proteins SecD/SecF [Candidatus Protochlamydia amoebophila UWE25] gi|46399526|emb|CAF22975.1| putative fusion protein export proteins SecD/SecF [Candidatus Protochlamydia amoebophila UWE25] Length = 1510 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 202/850 (23%), Positives = 355/850 (41%), Gaps = 68/850 (8%) Query: 42 NRISLGLDLRGGSHL---VLEVDEDDFV-NGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 + GLDL GG + +L+ + L+ +EL + + K G+ ++R + Sbjct: 660 KVLKWGLDLSGGKTVRIGLLDQNGRTVTNPEDLKQAVNELYTRINKMGVAERTIRIENSN 719 Query: 98 ITLSFADSRFKENIAD---------KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148 I L F S+ V +N+ L + L E ++ Sbjct: 720 ILLDFPGSQNLSASELVKASAMYFHIVNEKFGPLNTALAGAVNQFLQDIWNEAVVTNRRD 779 Query: 149 QNNIDQVISHAI---EQSMEIIRQRIDQIGIS--ESTIQRLGSHRILIQLPGEQDPSRLR 203 +I+++ + E+S +R R D I +R++ Q E + Sbjct: 780 IESINEIAWQHLGGDEESTITMRPRTDHAKILYENGLRLANPKNRVVTQAFDESLSTLAM 839 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 G +A+ P ++ Y ++ + Sbjct: 840 FRGGDSAEWDNQ-THPLLVVFHNFALEGSNLENIQPGYDATQGNILTFGIKRSFDSGEHA 898 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK----AQI 319 ++ A T + +L +I + I Sbjct: 899 SGSPRDNFFNWTSQFAEDKIAGTPKEVYSNGRGWRMAVILNGSIITAPSLNAALRDGGTI 958 Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 SG F+ LAA L+AGSL I+ E NV +LG + KG A + L L+V+ M Sbjct: 959 SGRFSQREVTQLAADLKAGSLSFTPRILSEENVSPELGREERAKGIVASLVALALVVIAM 1018 Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439 I Y G +A ++ LN+ + +L LGA LTLP IAGIVL IG+AVD+N+LV ERIR Sbjct: 1019 IGYYHFAGFIASCAVLLNIFIMWGVLQNLGAALTLPGIAGIVLTIGMAVDANVLVFERIR 1078 Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499 EE + + ++ G+ +A+S I DSNIT +IA ++L F G ++GFA+T+ + I+ S Sbjct: 1079 EEFKVTGRIASAIQAGYRKAFSAIIDSNITTIIAAIILIQFDSGPIKGFAVTLIIGIISS 1138 Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559 MFTA+ + R ++ + K + + + F++ + IS++ Sbjct: 1139 MFTALFMTRYFFAGWVKKPEHKQLSMAQFLK------ETHFDFLKQAKKAIVISLIVMGI 1192 Query: 560 SICLLFTHGLN-YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ---------------- 602 L + +G+DF GG L + + R + Sbjct: 1193 GTYFLVSERKTIFGMDFTGGYSLTLDVAEKAEKPNYRLEAINAFLDKGASRRDFEVRELS 1252 Query: 603 ----------------IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + + L+ + + Sbjct: 1253 RPNQLRIQLGTSMDEKGHPFYQMPEINPDSKYAFDYQKDPRLSWVVETLQSHGLDVQQSQ 1312 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 + +N I+ + S + I+ + + IA+LIYI RF++ FA+GA+ L+ D+ Sbjct: 1313 LTTLQKNWTIMSGQFSDTMRNNAIIALGAALIAILIYITFRFEFKFAIGAVIGLVHDVII 1372 Query: 707 TLGFFALFGI-----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 TLG ALF + +L V A++T+IGYS+ND ++V+DR+R++MK +SFR++I Sbjct: 1373 TLGILALFHAIGFPVQIDLQVVGAIMTIIGYSLNDTIIVFDRIREDMKTL-RRLSFREII 1431 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + ++N TL R++ TS + +L + + GG I +F++ M G++V SS+FIA+P++L Sbjct: 1432 NHALNVTLSRTIMTSGTTLLVLLALVLLGGQSIFAFSLVMTVGVLVGTLSSLFIASPVML 1491 Query: 822 FIYDWRAKNA 831 + ++ ++ Sbjct: 1492 YFHNKEVEHQ 1501 >gi|300934556|ref|ZP_07149812.1| preprotein translocase subunit SecD [Corynebacterium resistens DSM 45100] Length = 1074 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 176/932 (18%), Positives = 331/932 (35%), Gaps = 124/932 (13%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65 + ++ GL+ N LG+DL+GG+ + L Sbjct: 22 LALFCLILVTVFGLIFLTGN--------------KSLSPKLGIDLQGGTRITLVPQGAKP 67 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125 + L L + G+ +R + I ++ E + Q V Sbjct: 68 SSEQLDQARRILSDRVNGMGVSGAEVRADGSNIVITVP-GENVEEAR-TLGKTSQLVFRP 125 Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR-- 183 + P + E E A ++ ++++ Q + + Sbjct: 126 VVQQPAQPDKGVFKEVEAMANRWVEVGALTPDAAQKKLDDLMKFLKQQKVPNAPKELKIT 185 Query: 184 ------------LGSHRILIQLPGEQDPSRLRQLLGTTAK-MSFHKVLPNNSKKGFMFGV 230 +R + D + A+ + + + Sbjct: 186 AKAPAEGKTSVEQQKNRDKMVKVLLADRQSDKPNKQEAARALLTCEGADKLAGADDPAKP 245 Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGAT-------------------ANFDPKTHKPVVD 271 D+ G ++ + G Sbjct: 246 FVTCDTQGQVQVLGPAPVLEGSKPGPDAKYLTGAMIDGNAPITGGLNPQTTQMAISFKFK 305 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQISGNFTIETAGI 330 + G +++ + + K +A+ LD +VL+APVI + P +QI+G+F+ + A Sbjct: 306 TGKETPGGETWYKFGQQMLQKQVAITLDSKVLSAPVIQEPTPPGNVSQITGDFSEKEAQD 365 Query: 331 LAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 +A LR G+LPI + LG S+ G A GL+LI L+ +V Y Sbjct: 366 VANNLRYGALPISFVGENGEPGGTTTTISPTLGEASLKAGLIAGAVGLLLIALYALVYYR 425 Query: 385 KWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440 G++A S+ ++ L L+ LLG +L L IAG+++G+G DS ++ ERI++ Sbjct: 426 GLGIIALVSLLSSLALVYGLIVLLGRWIGYSLDLAGIAGLIIGLGTTADSFVIYFERIKD 485 Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500 E R + ++ + RA TI N +L +VL+F G V+GFA T+GL+ + + Sbjct: 486 EIRDGSTFRSAVPRAWQRARRTIVTGNAVSLFGALVLYFLAIGEVKGFAFTLGLTTVFDL 545 Query: 501 FTAISIVRAMMIFIIRYKKMKSID------------------------------------ 524 A + ++I R + Sbjct: 546 VIAFLVSAPLVILASRRPTFANPRLNGLGSAFRASDAQGASGGKRRRNEKGAVTGDSGET 605 Query: 525 ---------------INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 + + Q + R + + +I + G Sbjct: 606 SATKDADQKPAATEKSSMGFFDKMYNGMGGFQIIPKRRKWYTLMVAMLAVAIGAILIRGF 665 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 GIDF+GG ++ + V S V E G + V S Sbjct: 666 TLGIDFQGGTRMAMPPADNVTQSQVEETFEEAIGVRPQSAQTVGSGDSRVIEVTSERLSD 725 Query: 630 AQ-----TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 Q + + E + K + V + + ++ ++ + + + + YI Sbjct: 726 DQIRQVRSALFEKFQPKNAAGEVSESAVTDSTVSESWGKSITQRMLLSLGVFLLIVFAYI 785 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 +R + AL AI T++LD+ G +AL G E + V +LT++ +S+ D VVV+D++ Sbjct: 786 TVRLERDMALAAIVTILLDLAVVAGLYALIGFEVSPATVIGLLTILAFSLYDVVVVFDKI 845 Query: 745 RKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSF 797 R+N +T +F + + ++N+T+ RS+ TS+ + + ++ + V G + Sbjct: 846 RENTAGLFGSTRSTFDEQANLALNQTIMRSINTSIFSAVPIVSLLVVAVGLMGVGTLKDL 905 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 A+ G++V +SIF AAP+L I + K Sbjct: 906 ALVQFIGVIVGTFNSIFFAAPLLASIKARQRK 937 >gi|323485628|ref|ZP_08090967.1| translocase subunit secF/protein translocase subunit secD [Clostridium symbiosum WAL-14163] gi|323401039|gb|EGA93398.1| translocase subunit secF/protein translocase subunit secD [Clostridium symbiosum WAL-14163] Length = 718 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 174/566 (30%), Positives = 294/566 (51%), Gaps = 1/566 (0%) Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 + VV ++F+E G + F + T +GKP+ +V DG+ ++AP + + I G+ +I G + E Sbjct: 141 EYVVALTFNEEGTKAFADATTKGVGKPIYIVYDGQPISAPNVKEPITGGQCRIDGMGSFE 200 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LAA +R GSL ++L + VGA LG ++I A G ++V+FMI Y Sbjct: 201 EAENLAATIRIGSLSLELEELRSNVVGAKLGQEAISTSLKAGAIGFGIVVVFMIFAYLIP 260 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 GL A ++ L V L L LL+ TLTLP +AGI+L IG+AVD+N+++ RI+EE + Sbjct: 261 GLAASIALCLYVGLILVLLAAFEVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGMGK 320 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 +V ++ GF++A S I D N+T LIA VLF+ G G V+GFA T+ + I++SMFTA+ + Sbjct: 321 TVKSAIKTGFAKALSAIIDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTALFV 380 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566 + + + + + P + A + ++ ++ Sbjct: 381 TKFALYCLFEAGLQDAKYYGVKKDTKVRPFLRYRKLCFAVSGVLILAGFAAMGMNSASGG 440 Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 LNY ++F+GG V N + L + S + + +K Sbjct: 441 SILNYSMEFRGGTSTNVTFNEDMSLDRISSEVVPVVEKITGEAGTQTQKVAGTNEVIIKT 500 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 +++ E+ K + + + IS+E+ + ++ V+I+ I ML+YIW Sbjct: 501 RTLSVDEREELDKALVDTFGVDQEKITADSISGAISKEMKQDAVIAVVIATICMLLYIWF 560 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 RF FA A+ L+ D+ + F+A+F T +A +LT++GYS+N +V++DR+R Sbjct: 561 RFSNITFAASAVLALVHDVLVVVTFYAVFKWSVGSTFIACMLTIVGYSINATIVIFDRIR 620 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 +NMKL + + D+++ SI++TL RS+ TS+ FI V + + G S I FA+P+ GI Sbjct: 621 ENMKLKKHTQTVEDVVNLSISQTLTRSINTSLTTFIMVFVLFLMGVSSIREFALPLMVGI 680 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831 V SS+ + + + + A Sbjct: 681 VCGTYSSVCLTGSMWYLFNQKKEQKA 706 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 81/180 (45%), Gaps = 4/180 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +VG K+ +E I + I +++++ + L A L L + L A Sbjct: 222 RSNVVGAKLGQEAISTSLKAGAIGFGIVVVFMIFAY-LIPGLAASIALCLYVGLILVLLA 280 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + L VA ++ IG +V+ V+++ R+++ + + + + I + L Sbjct: 281 AFEVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGM---GKTVKSAIKTGFAKALSAI 337 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+ + G + FA +A GI+++ +++F+ L +++ ++A+ Sbjct: 338 IDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTALFVTKFALYCLFEAGLQDAK 397 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 3/165 (1%) Query: 35 FPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI 94 + I LGLDL GG + + E + + + +L+ ++ ++ Sbjct: 24 YFGYSTMGAIKLGLDLAGGVSITYQAKEANPSSEDMADTIYKLQQRVQNYSTEAEVYQEG 83 Query: 95 QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154 N+I + I ++ V L+ + + L + + ++ + Sbjct: 84 SNRINVDIPGVSDANAILQELGKPGSLVF--LDSEFNQVLDGKQVSSAKAGM-DDSSGVK 140 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 A+ + E + D + I P ++P Sbjct: 141 EYVVALTFNEEGTKAFADATTKGVGKPIYIVYDGQPISAPNVKEP 185 >gi|323691702|ref|ZP_08105963.1| protein-export translocase [Clostridium symbiosum WAL-14673] gi|323504246|gb|EGB20047.1| protein-export translocase [Clostridium symbiosum WAL-14673] Length = 718 Score = 308 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 174/566 (30%), Positives = 294/566 (51%), Gaps = 1/566 (0%) Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 + VV ++F+E G + F + T +GKP+ +V DG+ ++AP + + I G+ +I G + E Sbjct: 141 EYVVALTFNEEGTKAFADATTKGVGKPIYIVYDGQPISAPNVKEPITGGQCRIDGMGSFE 200 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LAA +R GSL ++L + VGA LG ++I A G ++V+FMI Y Sbjct: 201 EAENLAATIRIGSLSLELEELRSNVVGAKLGQEAISTSLKAGAIGFGIVVVFMIFAYLIP 260 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 GL A ++ L V L L LL+ TLTLP +AGI+L IG+AVD+N+++ RI+EE + Sbjct: 261 GLAASIALCLYVGLILVLLAAFEVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGMGK 320 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 +V ++ GF++A S I D N+T LIA VLF+ G G V+GFA T+ + I++SMFTA+ + Sbjct: 321 TVKSAIKTGFAKALSAIIDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTALFV 380 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566 + + + + + P + A + ++ ++ Sbjct: 381 TKFALYCLFEAGLQDAKYYGIKKDTKVRPFLRYRKLCFAVSGVLILAGFAAMGMNSASGG 440 Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 LNY ++F+GG V N + L + S + + +K Sbjct: 441 SILNYSMEFRGGTSTNVTFNEDMSLDRISSEVVPVVEKITGEAGTQTQKVAGTNEVIIKT 500 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 +++ E+ K + + + IS+E+ + ++ V+I+ I ML+YIW Sbjct: 501 RTLSVDEREELDKALVDTFGVDQEKITADSISGAISKEMKQDAVIAVVIATICMLLYIWF 560 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 RF FA A+ L+ D+ + F+A+F T +A +LT++GYS+N +V++DR+R Sbjct: 561 RFSNITFAASAVLALVHDVLVVVTFYAVFKWSVGSTFIACMLTIVGYSINATIVIFDRIR 620 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 +NMKL + + D+++ SI++TL RS+ TS+ FI V + + G S I FA+P+ GI Sbjct: 621 ENMKLKKHTQTVEDVVNLSISQTLTRSINTSLTTFIMVFVLFLMGVSSIREFALPLMVGI 680 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831 V SS+ + + + + A Sbjct: 681 VCGTYSSVCLTGSMWYLFNQKKEQKA 706 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 81/180 (45%), Gaps = 4/180 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +VG K+ +E I + I +++++ + L A L L + L A Sbjct: 222 RSNVVGAKLGQEAISTSLKAGAIGFGIVVVFMIFAY-LIPGLAASIALCLYVGLILVLLA 280 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + L VA ++ IG +V+ V+++ R+++ + + + + I + L Sbjct: 281 AFEVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGM---GKTVKSAIKTGFAKALSAI 337 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+ + G + FA +A GI+++ +++F+ L +++ ++A+ Sbjct: 338 IDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTALFVTKFALYCLFEAGLQDAK 397 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 3/165 (1%) Query: 35 FPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI 94 + I LGLDL GG + + E + + + +L+ ++ ++ Sbjct: 24 YFGYSTMGAIKLGLDLAGGVSITYQAKEANPSSEDMADTIYKLQQRVQNYSTEAEVYQEG 83 Query: 95 QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154 N+I + I ++ V L+ + + L + + ++ + Sbjct: 84 SNRINVDIPGVSDANAILQELGKPGSLVF--LDSEFNQVLDGKQVSSAKAGM-DDSSGVK 140 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 A+ + E + D + I P ++P Sbjct: 141 EYVVALTFNEEGTKAFADATTKGVGKPIYIVYDGQPISAPNVKEP 185 >gi|153810178|ref|ZP_01962846.1| hypothetical protein RUMOBE_00559 [Ruminococcus obeum ATCC 29174] gi|149833357|gb|EDM88438.1| hypothetical protein RUMOBE_00559 [Ruminococcus obeum ATCC 29174] Length = 802 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 202/709 (28%), Positives = 351/709 (49%), Gaps = 9/709 (1%) Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187 KN+ + Q + + ++ +++R++Q E+ + + GS Sbjct: 33 TGSAKNIKTGLDLSGGVSITYQAKDSNPSAEDMSDTVYKLQKRVEQYST-EAQVYKEGSD 91 Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSF-HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 RI +++PG D + LG + F + + G ++ ++ Sbjct: 92 RIAVEIPGVTDADAILNDLGKPGSLCFITMTDDDGNANFSSTGSGYVLARSLDEIRESGS 151 Query: 247 VEISGIHLNGATANFDPKT----HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302 V + G + A + V ++ + G +F + T N+GK +A+V D ++ Sbjct: 152 VVLEGTDVKDAQGGAFQSDKNSSREYAVSLTLTDEGKTKFADATEANVGKQIAIVYDNQI 211 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 L+AP +N+AI G+AQI+G ++E A LA+ +R GSL I+L + V A LG ++I Sbjct: 212 LSAPKVNEAITGGQAQITGMSSVEEAQNLASYIRIGSLSIELEELRSSVVAAQLGEEAIS 271 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 A + GLV++++FMI++Y G+VA ++ L + L L+ TLTLP IAGI+L Sbjct: 272 TSVMAGLIGLVIVIIFMIIMYRLPGVVAGVALILYTAIVLITLNAFDITLTLPGIAGIIL 331 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 GIG+AVD+N+++ RI+EE SV S+ GFS+A+S IFD NIT LIA++VL + G Sbjct: 332 GIGMAVDANVIIYARIQEEIAAGNSVRASIKSGFSKAFSAIFDGNITTLIASLVLMWLGS 391 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542 G V+GFA T+ L I++SMFTA+ + R +M + + + + Sbjct: 392 GTVKGFAYTLALGIVVSMFTALVVSRFVMNALYAVGFHDEKFYGRAKQRKVFNVVGKRKV 451 Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 + +S ++ + LNY +DF GG V N +D+ + S + + Sbjct: 452 FFIISIILILSGPVAMAIHHNVDGTALNYALDFSGGTATTVTFNEDMDIKQIDSEVTPVV 511 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 +N K +++Q ++ + + ++ TE + +S Sbjct: 512 EEVTGDKNVQPTKVVGTNQVVIKTRTLSQEEREKLDNALVEKFNVDDSLITTESISSTVS 571 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721 E+ R +V VI++ + ML YIW RFK FA A+ L+ D+ F+ + I T Sbjct: 572 SEMRRDAVVAVIVATLCMLAYIWFRFKDIRFASSAVLALLHDVLVVFAFYGISRISVGNT 631 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 +A +LT++GYS+N +V++DR+R+N K + + +++++SI +TL RS+YTS F+ Sbjct: 632 FIACMLTIVGYSINATIVIFDRIRENTK--GSRSNLEEIVNESITQTLTRSMYTSFTTFV 689 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 V + + G S I FA P+ G++ A SS+ I + L + + K Sbjct: 690 MVAVLYIMGVSSIREFAAPLMVGVICGAYSSVCITGALWLVMKRYYKKP 738 >gi|187933322|ref|YP_001885227.1| protein export protein SecD [Clostridium botulinum B str. Eklund 17B] gi|187721475|gb|ACD22696.1| protein export protein SecD [Clostridium botulinum B str. Eklund 17B] Length = 720 Score = 307 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 183/633 (28%), Positives = 338/633 (53%), Gaps = 11/633 (1%) Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 + + + TT +V + + + E + ++G + A+A Sbjct: 85 VAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSGNLVFKSPEGEEILTGKDVKKASAVL 144 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 + + PVV + ++ G + F E T +G+ ++V +D +LT+P + I G A I+G Sbjct: 145 NQQDGNPVVSLELNDDGQKAFAEATGKYVGQKISVYMDDELLTSPTVQTQITDGSAIITG 204 Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381 + ++E A LA ++ +G+LP+ + V +NVGA LG+ ++ A G+ L+ LFMI+ Sbjct: 205 STSLEDAKKLAGIINSGALPVTVKAVSVQNVGAQLGATALPNALKAGAIGIGLVFLFMIL 264 Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 Y G++A ++ L + +TL + S +G TLTLP IA ++L IG+AVD+N+L+ ERI+EE Sbjct: 265 YYRVPGILASIALTLYITITLLIFSEIGVTLTLPGIAALLLTIGMAVDANVLIFERIKEE 324 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 ++ S+ S+ GF A S+I DSN+T ++A ++L+F G G V+GFA+T+ + I++S+F Sbjct: 325 LKRGISIKTSVKKGFENALSSIVDSNVTTILAGLILYFLGSGTVKGFAVTLMIGIIVSLF 384 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR---ARFWGVGISILFSI 558 T++ + + ++ + +K + + R Q+ + + IS++ + Sbjct: 385 TSLVVTKVLVNLSVDIGLLKKLSHFGVKREEEDIKTGERQYFKIIEKSKIWLSISLIVIL 444 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 LFT GLN+GIDFKGG QL + VD V + +++ ++ + + Sbjct: 445 LGCGFLFTKGLNFGIDFKGGTQLTIQLKDGVDKQDVDNIIKTYASDAVTNTINNNQYEVK 504 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 S T + E + + + + +G I +EL + ++ + ++ I Sbjct: 505 SGDLNSENVSSIMTELKEKY------DLDDNALLAQDEIGASIGKELTQNSLIALFVACI 558 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ML YI +RF+ F + A+ + D+ T+ +A+FGI N +AA+LT+IGYS+ND + Sbjct: 559 VMLGYIGVRFELKFGIAALVATLHDVLITVSVYAIFGISVNTPFIAAILTIIGYSMNDTI 618 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 V++DR+R+N K + ++ D S+ ET+ RS+ T+M +++ + ++ + F Sbjct: 619 VIFDRIRENSKSM-RRANPIEIADTSLTETMTRSINTTMTTLFTIVAVNIF-VPTVREFT 676 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +P+ GIV A SSIF+A+P+ +++ D K Sbjct: 677 VPLIIGIVAGAYSSIFVASPVWVYLKDKLGKGK 709 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 2/144 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ L+++I + L +A + ++ + + I GLDL+GG +++E+ Sbjct: 1 MKKKGKSSALFTVIVLVTLFLAF-SGFKGFVVGGWEIKSFNDVIKKGLDLQGGVSVLMEI 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119 ED L+ + + + K G+ + +I + + + I D ++ Sbjct: 60 QEDKVTQDQLESTKEHISLRVNKMGVAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSG 119 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEI 143 V + + Sbjct: 120 NLVFKSPEGEEILTGKDVKKASAV 143 >gi|295108469|emb|CBL22422.1| protein translocase subunit secF/protein translocase subunit secD [Ruminococcus obeum A2-162] Length = 803 Score = 307 bits (784), Expect = 7e-81, Method: Composition-based stats. Identities = 201/709 (28%), Positives = 353/709 (49%), Gaps = 9/709 (1%) Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187 KN+ + Q + + ++ +++R++Q E+ + + G+ Sbjct: 33 TGSAKNIKTGLDLSGGVSITYQAKDSNPSAEDMSDTVYKLQKRVEQYST-EAQVYKEGND 91 Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSF-HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 RI +++PG D + LG + F + + G + ++ Sbjct: 92 RIAVEIPGVTDADAILNDLGKPGSLCFITAEDDDGNANFTSTGSGYALARSLDEIREAGS 151 Query: 247 VEISGIHLNGATANFDPKT----HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302 V + G + A + V ++ + G +F + T+ N+GK +A+V D ++ Sbjct: 152 VVLEGTDVKDAQGGAFQSDKNSSREYAVSLTLTDEGKTKFADATKANVGKQIAIVYDNQI 211 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 L+AP +N+AI G+AQI+G +E A LA+ +R GSL I+L + V A LG ++I Sbjct: 212 LSAPKVNEAITGGQAQITGMADVEEAQNLASYIRIGSLSIELEELRSSVVAAQLGEEAIS 271 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 A + GL+++++FMI++Y G+VA ++ L + L L+ TLTLP IAGI+L Sbjct: 272 TSVMAGLIGLIIVIVFMIIMYRLPGVVAGVALILYTAIVLITLNAFDITLTLPGIAGIIL 331 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 GIG+AVD+N+++ RI+EE SV S+ GFS+A+S IFD NIT LIA++VL + G Sbjct: 332 GIGMAVDANVIIYARIQEEIAAGNSVRASIKSGFSKAFSAIFDGNITTLIASLVLMWLGS 391 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542 G V+GFA T+ L I++SMFTA+ + R +M + + + + Sbjct: 392 GTVKGFAYTLALGIVVSMFTALVVSRFVMNALYAVGFHDEKFYGRAKQRKIFNIVGKRKV 451 Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 + +S ++ + LNY +DF GG V N +D+ + S + + Sbjct: 452 FFIISIVLILSGPVAMLIHHNVDGTALNYALDFSGGTATTVTFNEDMDIKQIDSEVTPVV 511 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 +N K +++Q ++ + + + ++ TE + +S Sbjct: 512 EEVTGDKNVQPTKVVGTNQVVIKTRTLSQEEREKLDQALVDKFDVDESLIATESISSTVS 571 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721 E+ R +V VI++ + ML+YIW RFK FA A+ L+ D+ F+ + I T Sbjct: 572 SEMRRDAVVAVIVATLCMLVYIWFRFKDIRFASSAVLALLHDVLVVFAFYGISRISVGNT 631 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 +A +LT++GYS+N +V++DR+R+NMK + + +++++SI +TL RS+YTS F+ Sbjct: 632 FIACMLTIVGYSINATIVIFDRIRENMK--GSRVKLDEIVNESITQTLTRSMYTSFTTFV 689 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 V + + G S I FA P+ G++ A SS+ I + L + + K Sbjct: 690 MVAVLYILGVSSIREFAAPLMVGVICGAYSSVCITGALWLVMKRYYRKP 738 >gi|225568641|ref|ZP_03777666.1| hypothetical protein CLOHYLEM_04719 [Clostridium hylemonae DSM 15053] gi|225162569|gb|EEG75188.1| hypothetical protein CLOHYLEM_04719 [Clostridium hylemonae DSM 15053] Length = 721 Score = 307 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 202/688 (29%), Positives = 331/688 (48%), Gaps = 26/688 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q + ++ +++R++Q E+ + + G RI I++PG D + + Sbjct: 51 ITYQVKDKNPSEEEMRDTIYKLQKRVEQYST-EANVYQEGDDRINIEIPGVSDANAILDE 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG + F G R + D Sbjct: 110 LGKPGSLVFQTQDNETVITGSDVKTASARAGE-----------------------DDMGN 146 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + V++ +E G ++F E T N+GKP++++ DG +++P + AI G+A I+GNF+ Sbjct: 147 KEYSVELDLNEEGTKKFAEATEANVGKPISIIYDGETISSPTVQTAITGGQAYITGNFSY 206 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A LA+ +R G L ++L + VGA LG +I A GL ++ LFMI +Y Sbjct: 207 EEAESLASTIRIGGLKLELEELRSNVVGAQLGEQAISTSLKAGAIGLAIVFLFMICVYLL 266 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 GL + ++ + L L +L+ TLTLP IAGI+L IG+AVD+N+++ R+REE K Sbjct: 267 PGLASSLALIIYTGLVLVILNAFNVTLTLPGIAGIILSIGMAVDANVIIFARVREEMSKG 326 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +SV SL GF +A S I D N+T LIA VL+F G G+V+GFA T+ + I++SMFTA+ Sbjct: 327 KSVRNSLKTGFQKAMSAIVDGNVTTLIAAAVLWFKGSGSVKGFAQTLAIGIIVSMFTALV 386 Query: 506 IVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564 I R ++ K + P I ++ A V I + Sbjct: 387 ITRMIVYAFYAVGLRKEKLYYRPRKERKPIDFLGRKKWFFALSLAVVILGFVFMGVNGSK 446 Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624 Y ++F+GG V N+ + + + + N +K Sbjct: 447 GKGAFAYSLEFEGGTSTNVTFNKDYTIEEIDKEIVPVVEEVTGDANVQTQKVADTNQVII 506 Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 ++ + K + ++ E + IS E+ + I+ VI++ I MLIYI Sbjct: 507 KTKTLGLDVREALNKALADKFKVDESLITAENISSTISNEMRQDAIMAVIVATIFMLIYI 566 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 W RFK FA A+T L+ D+ L F+A+ I T +A +LT++GYS+N +V++DR Sbjct: 567 WFRFKDIRFAASAVTALLHDVLVVLTFYAVARISVGNTFIACMLTIVGYSINATIVIFDR 626 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 +R+ ++L + + D+++KSI +TL RS+YTS+ F+ V + V G S I FA+P+ Sbjct: 627 IREELRLRSKTTELVDVVNKSITQTLTRSIYTSLTTFVMVAILFVMGVSSIREFALPLMV 686 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNA 831 GI+ A SS+ I + + K A Sbjct: 687 GIICGAYSSVCITGALWYVMRTKIGKKA 714 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 76/181 (41%), Gaps = 4/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +VG ++ + I + I + +++ + L + LI+ L Sbjct: 229 RSNVVGAQLGEQAISTSLKAGAIGLAIVFLFMICVY-LLPGLASSLALIIYTGLVLVILN 287 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + L +A ++ IG +V+ V+++ R+R+ M + S R+ + + + Sbjct: 288 AFNVTLTLPGIAGIILSIGMAVDANVIIFARVREEM---SKGKSVRNSLKTGFQKAMSAI 344 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 V ++ I+ + G + FA +A GI+V+ +++ I I+ Y + + Sbjct: 345 VDGNVTTLIAAAVLWFKGSGSVKGFAQTLAIGIIVSMFTALVITRMIVYAFYAVGLRKEK 404 Query: 833 I 833 + Sbjct: 405 L 405 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 54/156 (34%), Gaps = 2/156 (1%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 I LGLDL GG + +V + + ++ +L+ +++ ++ ++I + Sbjct: 37 ENIKLGLDLAGGVSITYQVKDKNPSEEEMRDTIYKLQKRVEQYSTEANVYQEGDDRINIE 96 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 I D++ V D + + + + + + ++ S ++ Sbjct: 97 IPGVSDANAILDELGKPGSLVFQT--QDNETVITGSDVKTASARAGEDDMGNKEYSVELD 154 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 + E ++ + + + I P Q Sbjct: 155 LNEEGTKKFAEATEANVGKPISIIYDGETISSPTVQ 190 >gi|332883137|gb|EGK03420.1| hypothetical protein HMPREF9456_01487 [Dysgonomonas mossii DSM 22836] Length = 996 Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats. Identities = 192/795 (24%), Positives = 375/795 (47%), Gaps = 31/795 (3%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123 + + LR+ + + G+ +++++ +I + + E + + Sbjct: 197 LQSVADNSFNVLRTRIDRFGVVAPNIQKLDRAERILIELPGVKEPERVKKLLQGSANLEF 256 Query: 124 SKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISH-AIEQSMEIIRQRIDQIGISES- 179 K + + + + + + + A + + + D +G ++ Sbjct: 257 WKTYNLQEIQNYIELMDQRSKEVLAANGTTAPVATDSLAAATTDSVKVESTDNLGFTKPL 316 Query: 180 -TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + + ++ + D + + ++L + + K Sbjct: 317 RSYFTTFAGGAIVGFVNKTDTAAVNKILHRYQDLYPGDLTFAWGFKAEDAKETQFALYSL 376 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 ++ + G + A A+ VD+ + GA+R+ +T G+ +A+VL Sbjct: 377 RGDGIKKGPALDGDVVISAKADQSQHGSAWEVDMQMNTTGAQRWATITGAEQGRSIAIVL 436 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 DG V +AP + I G++QI+G FT++ A L +L++G + ++IV+E VG LG Sbjct: 437 DGSVYSAPNVQNKIEGGRSQITGRFTVDDAKDLENVLKSGKMKAGVHIVQEDIVGPSLGQ 496 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 ++I G + + LVL+++++ V+YG GL+A+ ++ +N+ T+ +L+ GA +TLP I Sbjct: 497 EAITAGIFSFLLALVLLMIYICVIYGLIPGLIANSALIVNLFFTIGILAAFGAVMTLPGI 556 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL + LAVD+N+L+ ER REE R ++V ++ G+ A+S IFD +++ +I ++L Sbjct: 557 TGLVLALALAVDANVLIYERTREELRAGKNVKVAIVDGYRHAFSAIFDGHVSQVITAIIL 616 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 +FG G ++GFA T+ + I+ S T++ + R +++ K +++ + L Sbjct: 617 AYFGTGPIQGFATTLIIGIIASFLTSVFLTRIFYEYMLEKGKFRNLTFSTALSKKL-FLN 675 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I F+ V S + + + LF +GLN GIDF GG + ++ V+ + Sbjct: 676 TNINFLGMTKKVVIFSAIILVSGLASLFINGLNGGIDFTGGRNYLIRFDKNVNADDIEKL 735 Query: 598 LESLQIGDISFQNFDGE-----KNFLVRLQYQPGDSVAQTRVLEMVKKKI---------T 643 L G G VR+ A V ++ K+ Sbjct: 736 LVPEFQGSTVLVLTSGSATQSSTTSQVRVTTNYKVEEATDAVETEIRAKMTSALKEYLAP 795 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 + IQ+++ VGP ++ +L + V+I+ I M +YI IRF+ F+ G + Sbjct: 796 NTTIDNYIQSSQRVGPSVADDLKTAATIAVVIAVICMAVYILIRFRNIAFSAGTFFAVAH 855 Query: 703 DITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 D + ++L F +E + + +AAVLT++GYS+NDKVV++DR+R+ +Y + Sbjct: 856 DAVLVIFLYSLLYKIMPFSMEIDQSFIAAVLTVVGYSINDKVVIFDRIREIRNMYPKR-N 914 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 + I++++N TLGR++ TS+++ + V + + GG I SF + GI++ SS+F+A Sbjct: 915 ITETINEALNSTLGRTMNTSLSSMLVVFCIFLLGGDTIRSFTFAIFIGIIIGTYSSVFVA 974 Query: 817 APILLFIYDWRAKNA 831 PI I+ KN Sbjct: 975 TPIAWAIFKKEEKNK 989 Score = 55.1 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 51/336 (15%), Positives = 107/336 (31%), Gaps = 21/336 (6%) Query: 40 PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT 99 + I LGLDL+GG +++EVD + ++ ++ L G R+ N+ Sbjct: 95 REKEIGLGLDLKGGMSVIVEVDAAAVLRSLGDPDNEAFQTAL---GQASDENRKGSNRDY 151 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 +S +FK + + L + S + + T + ++ VL + Sbjct: 152 ISIFVDKFKASNGN---NKLASIFS---TKLRDQVSPTDDDNKVVAVL-----RTELQSV 200 Query: 160 IEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218 + S ++R RID+ G+ IQ+ + RILI+LPG ++P R+++LL +A + F K Sbjct: 201 ADNSFNVLRTRIDRFGVVAPNIQKLDRAERILIELPGVKEPERVKKLLQGSANLEFWKTY 260 Query: 219 PNNSKK------GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272 + + + + + + + T Sbjct: 261 NLQEIQNYIELMDQRSKEVLAANGTTAPVATDSLAAATTDSVKVESTDNLGFTKPLRSYF 320 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 + GA F D + + + + F + + Sbjct: 321 TTFAGGAIVGFVNKTDTAAVNKILHRYQDLYPGDLTFAWGFKAEDAKETQFALYSLRGDG 380 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 + + + + Sbjct: 381 IKKGPALDGDVVISAKADQSQHGSAWEVDMQMNTTG 416 >gi|261749600|ref|YP_003257286.1| bifunctional-export transmembrane SecDF protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497693|gb|ACX84143.1| bifunctional-export transmembrane SecDF protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 951 Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats. Identities = 184/794 (23%), Positives = 362/794 (45%), Gaps = 48/794 (6%) Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVN 123 + + + L S + K G+ ++++ N+I + + I + + + Sbjct: 174 IELSISDTHNILISRMDKFGVVQPNVQRIKKSNRILIELPGIENIDRIKNILQKRAELHF 233 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 ++ + + ++ + ++ R+ I + + Sbjct: 234 FEIYN-------FREIFPFFEKINKIYSENEKLERFEPNNLSSARKTRSFIKMLNISKIN 286 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243 + +++ L +++ +++ L + + + N K + Sbjct: 287 KMDNNLIVGLVHKKEMNKITDFLNSMDVVEYLPYALRNIKFLWGSKTYQYNQEKYVPLFA 346 Query: 244 EDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302 + S + + ++ ++I ++ GA+ + T NIG+ +A+VLD V Sbjct: 347 VKEENNSLNGDIIISAYKSFGPFNEIFINIKMNQEGAKNWKIFTEKNIGRNIAIVLDDLV 406 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 TAP + IP+G +QISGN +++ + L +L G LP + I++ VG LG ++I Sbjct: 407 YTAPFVKSVIPNGISQISGNLSLQESEDLVNVLSTGRLPTSVKIIQSEVVGPSLGKEAIQ 466 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG + ++ + ++M Y GL A+ ++ N + L L + + LT P IAGI+L Sbjct: 467 KGIFSFFIAIIFVFIWMFYYYIILGLYANIALIFNFVFILGFLISINSVLTFPGIAGIIL 526 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDM--GFSRAYSTIFDSNITALIATVVLFFF 480 + +++DS +L+ E+I+E+ R S+ ++ F A S+I D +T L+ ++LFFF Sbjct: 527 TLAMSMDSYVLIYEKIKEDMRNGISIRSAIHNSYTFQGALSSIIDGQVTTLLCGIILFFF 586 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G G ++GF+ T+ + I S F++I + + + + + K I + ++ Sbjct: 587 GIGPIKGFSTTLIIGIFTSFFSSIYLGKLFLEWHLNKYKKIFFRIWNS-------NKVSW 639 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 F+ R + IS + + S+ + GLN GIDF GG + +R V + L Sbjct: 640 DFLSKRKFSYAISFICILGSLISFYYKGLNLGIDFVGGRTYIIRFDRKVLPDHISFLLSK 699 Query: 601 LQIGD----ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ---- 652 I + GEKN + + + E+++K + P Sbjct: 700 YFIENGKPSSPKVFPFGEKNKMKIVTKYKIWNENNQIDQEILEKMFLALKPYFHTIDFQD 759 Query: 653 -------------NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698 ++E V P +++ + + + +++S + YI+IRF KW F LGA+ Sbjct: 760 FKTIDKDKSLGILSSEKVEPVMAKYITKNAFISILLSLFGIFFYIFIRFKKWKFGLGALV 819 Query: 699 TLILDITKTLGFFALFG-----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 +L+ D LG F++F +E + + +AA+LT+IGYS+ND V+VYD++RK T Sbjct: 820 SLLHDTIIVLGLFSIFHERFSVLEIDQSFIAALLTIIGYSINDTVIVYDKIRKFS--GTE 877 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 S S +++I+K IN +L R++ TS ++ + +GG+ I SF + + FG+ + SSI Sbjct: 878 SFSIKEIINKGINSSLTRTMNTSFITIWAICIILFFGGTTIRSFMLALLFGVSIGTYSSI 937 Query: 814 FIAAPILLFIYDWR 827 FIA+ I+ + + Sbjct: 938 FIASSIVYDLSKKK 951 Score = 109 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 5/147 (3%) Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + L A LI + LGF +A ++ + S++ V++Y+++ Sbjct: 483 MFYYYIILGLYANIALIFNFVFILGFLISINSVLTFPGIAGIILTLAMSMDSYVLIYEKI 542 Query: 745 RKNMKLYTTSISFRDLIDKSIN--ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 +++M+ IS R I S L + + + + + +G I F+ + Sbjct: 543 KEDMR---NGISIRSAIHNSYTFQGALSSIIDGQVTTLLCGIILFFFGIGPIKGFSTTLI 599 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829 GI + SSI++ L + + K Sbjct: 600 IGIFTSFFSSIYLGKLFLEWHLNKYKK 626 Score = 46.2 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 19/192 (9%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 ++LGLDLRGG L+LE+ E D + F + + FLK + N Sbjct: 67 ARNKVLNLGLDLRGGISLILEISEKDLLKKFSNNSKNPV--FLKALNHADKEKEKNPNVD 124 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 S F K+ D + I + +++VI Sbjct: 125 YFS------------SFLNFFYRNKKKIQTDFSISDFFVNRSYVDEINYTDRELEKVIRK 172 Query: 159 AIEQSM----EIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 IE S+ I+ R+D+ G+ + + S+RILI+LPG ++ R++ +L A++ Sbjct: 173 KIELSISDTHNILISRMDKFGVVQPNVQRIKKSNRILIELPGIENIDRIKNILQKRAELH 232 Query: 214 FHKVLPNNSKKG 225 F ++ Sbjct: 233 FFEIYNFREIFP 244 >gi|327439549|dbj|BAK15914.1| preprotein translocase subunit SecD [Solibacillus silvestris StLB046] Length = 757 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 192/699 (27%), Positives = 324/699 (46%), Gaps = 25/699 (3%) Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 S + ++ + + + RI++ G+SE +IQ G RI +QL G D R+LL Sbjct: 50 SLVDGQKITQDVLADTTTALDNRINEFGVSEPSIQIEGEDRIRVQLAGLADQDSARELLS 109 Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 +TA ++F V N G S Q + + Sbjct: 110 STANLTFRDVNDNILLDGTDLKEGGASPSFDQQNQPIVTLTLKDAAKFAEVTQKVMSMGA 169 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 P + F E + + + ++A + Q + + ISGNFT++ Sbjct: 170 PNNLLVVWLD----FEEGVDSYAEESKKPPEEQKFVSAASVTQVLNTTDVMISGNFTVDE 225 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A++L AGSLP+KL + +VGA G D++ A V G++LI LFM+ Y G Sbjct: 226 TKNFASILNAGSLPVKLTEIYSTSVGAQFGEDALNDTVFAGVVGVLLIFLFMLFYYRLPG 285 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 ++ ++ + L L + + + A LTLP IA IVLGIG+AVD+NIL ERIREE R S Sbjct: 286 FISIITLSVFTYLVLIVFNGINAVLTLPGIAAIVLGIGMAVDANILTAERIREELRVGHS 345 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 V + +G ++ S I D+ +T L+A VLF++G +V+GFA T+ +SIL+S TA+ Sbjct: 346 VKDAYKLGSKQSLSAIIDAQLTTLLAAAVLFYYGTSSVKGFATTLIISILLSFVTAVWGS 405 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI------------QFMRARFWGVGISIL 555 R + ++ + +SR I F+ R IS + Sbjct: 406 RVLQGLLVNSGYFNNPAWFGISRSKQHSIDEGITSLDLTTKFDKLDFVGNRKKFYAISTI 465 Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 + I +L LN GIDF G ++ + ++ + V+ L+ + + + Sbjct: 466 ILVAGIVVLGIFKLNLGIDFSSGTRVEIKSDTALVQEEVKDYLDEIGFANEDVVISGDNQ 525 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675 V E V +K + V + +EL + + + + Sbjct: 526 KIAVMRYKDDFSQQQVLDFKEQVNEKYG------HEPSLSTVSATVGKELAKNAMYALAL 579 Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 +A+ ++IY+ +RF+W LGAI +L+ D+ + F++ +E ++T +AAVLT++GYS+N Sbjct: 580 AALGIIIYVAVRFEWRMGLGAIVSLLHDVFFIIVIFSMLRLEVDITFIAAVLTIVGYSIN 639 Query: 736 DKVVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 D +V +DR+R+N+ + T +++KS+ +T+GRSV T + I V+ + G Sbjct: 640 DTIVTFDRIRENIDRHEEITTKEELALIVNKSLRQTMGRSVNTVLTVIIVVIALIFLGAP 699 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V SSI IAA + + Sbjct: 700 SIQNFSIALLIGLVTGIYSSICIAAQVWYSLKCREMDKK 738 Score = 69.3 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 86/738 (11%), Positives = 197/738 (26%), Gaps = 51/738 (6%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE----V 60 + + + + LL + +L N + LGLDL+GG ++ E V Sbjct: 2 KLANRIITFVLVVALLFTGMGTTVEKVL---------NDVKLGLDLQGGFEVLYEVESLV 52 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119 D L + L + + + G+ S++ ++I + A +++ + ++ Sbjct: 53 DGQKITQDVLADTTTALDNRINEFGVSEPSIQIEGEDRIRVQLAGLADQDSARELLSSTA 112 Query: 120 QGVNS-----------KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168 L + +++ L ++ + Sbjct: 113 NLTFRDVNDNILLDGTDLKEGGASPSFDQQNQPIVTLTLKDAAKFAEVTQKVMSMGAPNN 172 Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM---SFHKVLPNNSKKG 225 + + E + + + + Q+L TT M +F N Sbjct: 173 LLVVWLDFEEGVDSYAEESKKPPEEQKFVSAASVTQVLNTTDVMISGNFTVDETKNFASI 232 Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 G ++ ++ V G N V + F M Sbjct: 233 LNAGSLPVKLTEIYSTSV-------GAQFGEDALNDTVFAGVVGVLLIFLFMLFYYRLPG 285 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 I + L V +P A + G A IL A L + + Sbjct: 286 FISIITLSVFTYLVLIVFNGINAVLTLPGIAAIVLGIGMAVDANILTAERIREELRVGHS 345 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 + + +G+ +I + ++ + + SI L+ + + Sbjct: 346 VKDAYKLGSKQSLSAIIDAQLTTLLAAAVLFYYGTSSVKGFATTLIISILLSFVTAVWGS 405 Query: 406 SLLG------ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459 +L P+ GI ++D I + + ++ + + A Sbjct: 406 RVLQGLLVNSGYFNNPAWFGISRSKQHSIDEGITSLDLTTKFDKLDFVG----NRKKFYA 461 Query: 460 YSTIFDSNITALIATVVL-----FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 STI ++ L F G + + I ++ Sbjct: 462 ISTIILVAGIVVLGIFKLNLGIDFSSGTRVEIKSDTALVQEEVKDYLDEIGFANEDVVIS 521 Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574 +K+ + + D + ++ ++ Sbjct: 522 GDNQKIAVMRYKDDFSQQQVLDFKEQVNEKYGHEPSLSTVSATVGKELAKNAMYALALAA 581 Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 I + V + L + S L + + F E + + Sbjct: 582 LGIIIYVAVRFEWRMGLGAIVSLLHDVFFIIVIFSMLRLEVDITFIAAVLTIVGYSINDT 641 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + + I I E + +++ L + V +++ I + F Sbjct: 642 IVTFDRIRENIDRHEEITTKEELALIVNKSLRQTMGRSVNTVLTVIIVVIALIF-LGAPS 700 Query: 695 GAITTLILDITKTLGFFA 712 ++ L I G ++ Sbjct: 701 IQNFSIALLIGLVTGIYS 718 >gi|295090918|emb|CBK77025.1| protein translocase subunit secF/protein translocase subunit secD [Clostridium cf. saccharolyticum K10] Length = 730 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 192/685 (28%), Positives = 324/685 (47%), Gaps = 30/685 (4%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q + + ++ ++ ++QR+ E+ + + G+ RI I +PG D + + Sbjct: 45 ITYQAKDENPSAEDMKDTIYKLQQRVQNYST-EAEVYQEGNDRINIDIPGVSDANAILAE 103 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG + F E ++G ++ A A T Sbjct: 104 LGKPGSLVFMDS--------------------------EGTTILTGDQVSAAQAGMIDGT 137 Query: 266 --HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 + VV ++F E G + F + T +N+G+P+ ++ D V++AP++ +AI G+ I G Sbjct: 138 TGKEYVVSLTFTEEGTKAFADATTNNVGQPIYIIYDNEVVSAPIVQEAITGGQCTIDGIG 197 Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383 + E A LA+ +R GSL ++L + VGA LG +I A V G ++ +FMI +Y Sbjct: 198 SFEEAENLASTIRIGSLSLELEELRSNVVGAKLGQQAITTSLKAGVVGFAIVAVFMIAVY 257 Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 GL + ++ L V L L LL TLTLP +AGI+L IG+AVD+N+++ RI+EE Sbjct: 258 LIPGLASVIALCLYVGLILILLVSFNVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIG 317 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 ++V ++ GF +A S I D N+T LIA VLF+ G G V+GFA T+ + I++SMFTA Sbjct: 318 AGKAVKTAIQNGFQKALSAIVDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTA 377 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + R + + P + A V ++ + Sbjct: 378 LFVTRFALNALFEMGIQNPKFYGIKREKPAKPFLKYRKLCFALSSAVIVAGFVFMGLNKS 437 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 NY ++F+GG V N + + S + L + +K Sbjct: 438 ATGDLFNYSMEFQGGTSTNVTFNENLSQERIESEVVPLVEDITGDADVQTQKVTGTNEVI 497 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683 ++ E K E + +S+E+ + IV V+I+ + MLIY Sbjct: 498 IKTRTLNMEEREEFEKVMQDNFGVEEGKITAESISGAVSQEMKQDAIVAVVIATVCMLIY 557 Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 IW RFK FA ++ L+ D+ + +A F T +A +LT++GYS+N +V++D Sbjct: 558 IWFRFKNIRFAASSVLALVHDVLVVIACYAAFKWPVGSTFIACILTIVGYSINATIVIFD 617 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+N+K S +++++SI +T RSV TS+ F+ VL + + G S I FA+P+ Sbjct: 618 RVRENLKERKHDQSMEEILNQSITQTFTRSVNTSLTTFVMVLILYIMGVSSIREFALPLM 677 Query: 803 FGIVVAASSSIFIAAPILLFIYDWR 827 GIV SS+ +A + + R Sbjct: 678 VGIVCGTYSSVCLAGSLWFEMNRRR 702 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 79/180 (43%), Gaps = 4/180 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +VG K+ ++ I + ++ + +++ + L ++ L L + L Sbjct: 222 RSNVVGAKLGQQAITTSLKAGVVGFAIVAVFMIAVY-LIPGLASVIALCLYVGLILILLV 280 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + L VA ++ IG +V+ V+++ R+++ + + + I + L Sbjct: 281 SFNVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGA---GKAVKTAIQNGFQKALSAI 337 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 V ++ I+ + G + FA +A GI+++ +++F+ L +++ +N + Sbjct: 338 VDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTALFVTRFALNALFEMGIQNPK 397 Score = 57.8 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 30/80 (37%) Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA 103 I LGLDL GG + + +++ ++ +L+ ++ ++ ++I + Sbjct: 33 IKLGLDLAGGVSITYQAKDENPSAEDMKDTIYKLQQRVQNYSTEAEVYQEGNDRINIDIP 92 Query: 104 DSRFKENIADKVTLFLQGVN 123 I ++ V Sbjct: 93 GVSDANAILAELGKPGSLVF 112 >gi|330444196|ref|YP_004377182.1| protein export proteins secd/secf [Chlamydophila pecorum E58] gi|328807306|gb|AEB41479.1| protein export proteins secd/secf [Chlamydophila pecorum E58] Length = 1402 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 183/841 (21%), Positives = 340/841 (40%), Gaps = 66/841 (7%) Query: 41 KNRISLGLDLRGGSHLVLEV---DEDDFV-NGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96 +N + LG+D GG L+L + SDEL S L K G+ +R+ + Sbjct: 578 ENALRLGVDFIGGKQLMLSFKDHQGKRLSDKENILKVSDELYSRLNKLGVSEVEIRREGD 637 Query: 97 KITLSFADSRFKENIA-------------------DKVTLFLQGVNSKLNVDPKKNLLVT 137 I LS S + +Q L + ++ Sbjct: 638 YIYLSVPGSAKVSPAEILGTSKMSFHVVNEKFSPYNTFRYEVQRFLDYLWFSAQSQGQLS 697 Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 + + + ++ +++ ++Q + ES L + ++ Sbjct: 698 SEFINALASQVFYGSQETLPPSVREAIGKLKQEGLAFSLEESAPSSSELDTQLSMIAIQR 757 Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257 D L V N + G S G Y++ V+ G+ + Sbjct: 758 DVESKVNPLM--------IVFRNYALDGASLKDIRPEFSPGEGYILSFSVKDRGVSQSSN 809 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 ++ + G+ R V+ + + + A A Sbjct: 810 SSPTESFYAWTSAFCQDGVSGSPRSQYSGNR---GWRMAVVLDGQVISSPVLNAPLREHA 866 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 +SGNFT LAA L++G + ++ E + ++LG +G + L ++++ Sbjct: 867 SVSGNFTHREVSRLAADLKSGVISFVPEVLSEETISSELGKQQGVQGAFSACLALAVLII 926 Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 M V Y G++A ++ LN++L A L L A LTL +AGI+L +G+AVD+N+LV ER Sbjct: 927 LMSVYYKFGGVIASGAVILNMLLIWAALQYLDAPLTLSGLAGIILAMGMAVDANVLVFER 986 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 IREE ++S+ S++ G+ +A+ IFDSN+T ++A+V+L G ++GFA+T+ L I Sbjct: 987 IREEFLLSRSLALSIETGYKKAFGAIFDSNLTTVLASVLLLLLDTGPIKGFALTLILGIF 1046 Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557 SMFTA+ + + + I K+ + I + W V S++ Sbjct: 1047 SSMFTALFMTKFFFVMWI----RKTQETQLHMMNKFIGIRHDFLKECKKLWLVSGSVIVL 1102 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRP-VDLSVVRSNLESLQI------------- 603 G+DFKGG V A DLS ++ + + Sbjct: 1103 GGVALGFGAWNSVLGMDFKGGYAFTVQAENHDADLSKIQKQVANKLQLAGLSSRDYRIKV 1162 Query: 604 --------GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 S + R + + +L ++ Sbjct: 1163 LSSSEKLKVYFSRKALSRANPSFAREEISDPELAVAVGLLSETGVDVSSESLKEIQNFWT 1222 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 V + S ++ ++ ++G++ + +L+Y+ RF+W +A A+ L+ D+ T Sbjct: 1223 KVSGQFSNKMRQQALLGLLGAMGIILLYVSFRFEWRYAFSAVCALMHDLIATCAVLVATH 1282 Query: 716 -----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 I+ +L AV A++T++GYS+N+ ++++DR+R++ + +LI+ ++ +TL Sbjct: 1283 FFLQKIQIDLQAVGALMTVLGYSLNNTLIIFDRIRED-RQERLFTPMPELINDALQKTLS 1341 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R+V T+ +L + GG + +FA M GI++ SS++IA P+LLF+ Sbjct: 1342 RTVMTTATTLSVLLILLFVGGGAVFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEKLK 1401 Query: 831 A 831 Sbjct: 1402 Q 1402 >gi|256784320|ref|ZP_05522751.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces lividans TK24] gi|289768201|ref|ZP_06527579.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces lividans TK24] gi|289698400|gb|EFD65829.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces lividans TK24] Length = 797 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 202/715 (28%), Positives = 332/715 (46%), Gaps = 36/715 (5%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +I + + A ++++E++R RID +G++E TI R G +R++++LPG QDP Sbjct: 53 GTQIVLETKSTETTKADREATDRTVEVLRGRIDALGVAEPTIVRSGENRVVVELPGVQDP 112 Query: 200 SRLRQLLGTTAKMSFHKV---------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 + +LG TA+++ H V + G R L D G ++ Sbjct: 113 KKAADVLGRTAQLTVHSVLGAAEKPADATEGRTETAEDGERVLPDESGQSLRLKAATLTG 172 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP-------------LAVV 297 V + F + G+ R+ +VT + P ++ Sbjct: 173 QDVKGADARFDQQNGAGWTVTVDFKDSGSDRWAQVTGEAACNPAGDPTRRVAIVLDDKII 232 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 +V + I G QI+G+F A LA +++ G+LP+ + +E+R +GA LG Sbjct: 233 SSPQVDPSVSCGAGITGGSTQITGSFDDAEARELALLIKGGALPVPVETIEQRTIGATLG 292 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 ++I G A V G L LF+IV+Y G +A ++ +++ A L+ +GATLTLP + Sbjct: 293 DEAIDAGAWAAVIGTALTALFIIVVYRLMGALATVALLCYGLISYAALAAVGATLTLPGL 352 Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 AG VL IG+AVD+N+LV ER REE R S +L GF A+S I DSNIT LIA Sbjct: 353 AGFVLAIGMAVDANVLVFERAREEQAARTRPSTRSALTAGFRSAFSAIADSNITTLIAAA 412 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRF 531 +LFF G V+GF +T+G+ +L SM +A+ I R + F + + Sbjct: 413 LLFFLASGPVKGFGVTLGIGVLASMVSALVITRVLAEFAASRPAVFRRPRITGISSTGPV 472 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 MR + S++ + + + GLN+GI+F GG + VD Sbjct: 473 RDALLRRDPFLMRRPRRWLAASLIVLVVAGSGILVRGLNFGIEFTGGRLIEYSTATQVDP 532 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 R L Q+ V K + E+ + Sbjct: 533 DRARDALADAGFPRAVVQSSGDGD-------LTVRTEELSDTEAATVTKAVAELGGETEK 585 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 E++GP + EL R ++ + ++ A L Y+ +RF+ F A+ L D+ +G F Sbjct: 586 VRDELIGPSLGEELRRDALIALGLALAAQLAYLAVRFRLLFGTAAVGALAHDVVILVGVF 645 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A G + +AA+LT+IGYSVND VV++DR+R+ + F L + +I +TL R Sbjct: 646 AWLGKPIDGVFLAALLTVIGYSVNDSVVLFDRIRE-LLGKERKAPFDRLTNDAILQTLPR 704 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +V T M A + + +A+ + FA+ + G+ V SS+F A+P+ + +++ Sbjct: 705 TVNTGMGAVLILASLAILADDSLTDFALALLIGVGVGTYSSVFTASPLAIELHNR 759 >gi|46198653|ref|YP_004320.1| bifunctional preprotein translocase subunit SecD/SecF [Thermus thermophilus HB27] gi|55980666|ref|YP_143963.1| bifunctional preprotein translocase subunit SecD/SecF [Thermus thermophilus HB8] gi|46196276|gb|AAS80693.1| probable protein-export membrane protein [Thermus thermophilus HB27] gi|55772079|dbj|BAD70520.1| probable SecDF protein-export membrane protein [Thermus thermophilus HB8] Length = 735 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 217/696 (31%), Positives = 360/696 (51%), Gaps = 25/696 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLR 203 ++ + +++ +E++ ++ RI+ +G++E IQ G RI+++LP + D R Sbjct: 45 IVLEADVENPTLDDLEKARTVLENRINALGVAEPLIQIQGQKRIVVELPGLSQADQDRAL 104 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIH 253 +L+G A + F V + + LR++ ++G Sbjct: 105 KLIGQRAVLEFRIVKEGATGTTVAQINQALRENPRLNREELEKDLIKPEDLGPPLLTGAD 164 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313 L A A FD +P V ++F GA++F EVTR NIGK LA+VLDGRV TAPVI QAI Sbjct: 165 LADARAVFDQFG-RPQVSLTFTPEGAKKFEEVTRQNIGKRLAIVLDGRVYTAPVIRQAIT 223 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 G+A I G ++E A +A +LR+GSLP+ L + E R +G LG D+I G + + G + Sbjct: 224 GGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQDAIQAGIRSALIGTL 283 Query: 374 LIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432 I L + YG GLVA + L L LLS LGATLTLP IAG+VL +G AVD N+ Sbjct: 284 AIFLLIFAYYGPHLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNV 343 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 L ERI+EE R + + ++ GF + TI D NI L+A L+ + G VRGFA+ + Sbjct: 344 LSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVIL 403 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552 + ++ S+F+ + R ++ + +++ + FM + Sbjct: 404 AIGVVASVFSNLVFSRHLLERLADRGEIR---------PPMWLVDPRFNFMGPARYVTAA 454 Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 ++L + + ++F G NY IDF GG + A V++ +R LE Sbjct: 455 TLLLAALAAGVVFAKGFNYSIDFTGGTAYTLRAEPNVEVETLRRFLEEKGFPGKEAVITQ 514 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ +++ + + + + E VGP I EL R ++ Sbjct: 515 VQAPTAAYREFLVKLPPLSDERRLELERLFASELKATVLAS-ETVGPAIGEELRRNAVMA 573 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 V++ +L+Y+ RF W F + +I + D+ G ++L G+EF++ +AA+LT++GY Sbjct: 574 VLVGLGLILLYVAFRFDWTFGVASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGY 633 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 S+ND +VV DR+R+N KL + + +L+++SIN+TL R+V TS+ + +L + GGS Sbjct: 634 SINDSIVVSDRIRENQKLLRH-LPYAELVNRSINQTLSRTVMTSLTTLLPILALLFLGGS 692 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V+ FA+ + GI V SSI++ + +++ + R Sbjct: 693 VLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRRK 728 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 4/111 (3%) Query: 35 FPSAMPKNR-ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93 + P+ + LGLDL+GG +VLE D ++ L+ L + + G+ ++ Sbjct: 23 WKPWAPEEPKVRLGLDLKGGLRIVLEADVENPTLDDLEKARTVLENRINALGVAEPLIQI 82 Query: 94 IQN-KITLSFAD--SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141 +I + ++ + + + + Sbjct: 83 QGQKRIVVELPGLSQADQDRALKLIGQRAVLEFRIVKEGATGTTVAQINQA 133 >gi|289550598|ref|YP_003471502.1| Protein-export membrane protein SecD/Protein-export membrane protein SecF [Staphylococcus lugdunensis HKU09-01] gi|289180130|gb|ADC87375.1| Protein-export membrane protein SecD/Protein-export membrane protein SecF [Staphylococcus lugdunensis HKU09-01] Length = 762 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 178/696 (25%), Positives = 319/696 (45%), Gaps = 23/696 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ RI +QL G ++ ++ R +L + A Sbjct: 54 GDKIDKKALQSTAQTLENRVNVLGVSEPRIQVEDPDRIRVQLAGVKNQNQARDVLSSQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ N G + Q E V + + + K Sbjct: 114 LTIRDANDNVKLTGKDIVQGSAKQEFKQQ-TNEPTVTFKLKDRDKFKKVTEEISKKKENM 172 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + IN G ++ A + Sbjct: 173 MVVWLDYEKGDSYHKELQKKNENDRKYVSAASVNQPINSDSVEISGGFHGQEGVKKAKQI 232 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 + +L AGSLP+KL+ + +VGA G D++ K A G+ +I LFM+ Y G VA Sbjct: 233 SELLNAGSLPVKLDELTSTSVGAQFGQDALDKTIFASFIGIAVIYLFMVGFYRLPGFVAI 292 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 293 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 352 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R ++ Sbjct: 353 YTKANRSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 412 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ K + D F++ +G+SIL I Sbjct: 413 SLLVSSNYFKKKFWLFGVKKKQRHDINEGKDVHDLKTSFERWNFVKLAKPLIGLSILILI 472 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I +L LN GIDF G ++ V +N + + V ++ + + Q K Sbjct: 473 VGIVILSIFKLNLGIDFSSGSRVDVESNHSLSQAKVEKTMKDVGLKADEIQINGDGKKQA 532 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + ++ + K + V P I +EL + + +I ++I Sbjct: 533 TIMFKHDLAKKDIAKLNDKFK------NEFGHSPSVNTVSPVIGQELAKNALKALIYASI 586 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L ++ L+ D + F+LF IE ++T +AAVLT+IGYS+ND + Sbjct: 587 GIIIYVSLRFEWRMGLSSVLALLHDAFMIVAVFSLFRIEVDITFIAAVLTIIGYSINDTI 646 Query: 739 VVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ S D++++SI +T+ RS+ T + + V+ + ++G I Sbjct: 647 VTFDRVRENLHKLKVITSPEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILLFGAPSIF 706 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +F++ + G++ SSIFIA P+ + + K + Sbjct: 707 NFSLALLVGLISGVFSSIFIAVPLWGIMKKRQLKKS 742 Score = 115 bits (286), Expect = 5e-23, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 89/252 (35%), Gaps = 4/252 (1%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 L + + N + + N + + G + Sbjct: 177 LDYEKGDSYHKELQKKNENDRKYVSAASVNQPINSDSVEISGGFHGQEGVKKAKQISELL 236 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + VG + ++ + K I I + +++ ++ AI L Sbjct: 237 NAGSLPVKLDELTSTSVGAQFGQDALDKTIFASFIGIAVIYLFMVGFYRLP-GFVAIIAL 295 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 I TL F L +AA++ +G +V+ +++Y+R++ +++ + + Sbjct: 296 TTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI---GRTLKQA 352 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 K+ + +++ I+ + +G S + FA + GI++ +++F++ +L Sbjct: 353 YTKANRSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 412 Query: 821 LFIYDWRAKNAR 832 + + Sbjct: 413 SLLVSSNYFKKK 424 >gi|21224486|ref|NP_630265.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces coelicolor A3(2)] gi|4007709|emb|CAA22394.1| putative SecDF protein-export membrane protein [Streptomyces coelicolor A3(2)] Length = 795 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 202/715 (28%), Positives = 332/715 (46%), Gaps = 36/715 (5%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +I + + A ++++E++R RID +G++E TI R G +R++++LPG QDP Sbjct: 51 GTQIVLETKSTETTKADREATDRTVEVLRGRIDALGVAEPTIVRSGENRVVVELPGVQDP 110 Query: 200 SRLRQLLGTTAKMSFHKV---------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 + +LG TA+++ H V + G R L D G ++ Sbjct: 111 KKAADVLGRTAQLTVHSVLGAAEKPADATEGRTETAEDGERVLPDESGQSLRLKAATLTG 170 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP-------------LAVV 297 V + F + G+ R+ +VT + P ++ Sbjct: 171 QDVKGADARFDQQNGAGWTVTVDFKDSGSDRWAQVTGEAACNPAGDPTRRVAIVLDDKII 230 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 +V + I G QI+G+F A LA +++ G+LP+ + +E+R +GA LG Sbjct: 231 SSPQVDPSVSCGAGITGGSTQITGSFDDAEARELALLIKGGALPVPVETIEQRTIGATLG 290 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 ++I G A V G L LF+IV+Y G +A ++ +++ A L+ +GATLTLP + Sbjct: 291 DEAIDAGAWAAVIGTALTALFIIVVYRLMGALATVALLCYGLISYAALAAVGATLTLPGL 350 Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 AG VL IG+AVD+N+LV ER REE R S +L GF A+S I DSNIT LIA Sbjct: 351 AGFVLAIGMAVDANVLVFERAREEQAARTRPSTRSALTAGFRSAFSAIADSNITTLIAAA 410 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRF 531 +LFF G V+GF +T+G+ +L SM +A+ I R + F + + Sbjct: 411 LLFFLASGPVKGFGVTLGIGVLASMVSALVITRVLAEFAASRPAVFRRPRITGISSTGPV 470 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 MR + S++ + + + GLN+GI+F GG + VD Sbjct: 471 RDALLRRDPFLMRRPRRWLAASLIVLVVAGSGILVRGLNFGIEFTGGRLIEYSTATQVDP 530 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 R L Q+ V K + E+ + Sbjct: 531 DRARDALADAGFPRAVVQSSGDGD-------LTVRTEELTDTEAATVTKAVAELGGETEK 583 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 E++GP + EL R ++ + ++ A L Y+ +RF+ F A+ L D+ +G F Sbjct: 584 VRDELIGPSLGEELRRDALIALGLALAAQLAYLAVRFRLLFGTAAVGALAHDVVILVGVF 643 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A G + +AA+LT+IGYSVND VV++DR+R+ + F L + +I +TL R Sbjct: 644 AWLGKPIDGVFLAALLTVIGYSVNDSVVLFDRIRE-LLGKERKAPFDRLTNDAILQTLPR 702 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +V T M A + + +A+ + FA+ + G+ V SS+F A+P+ + +++ Sbjct: 703 TVNTGMGAVLILASLAILADDSLTDFALALLIGVGVGTYSSVFTASPLAIELHNR 757 >gi|222151523|ref|YP_002560679.1| protein translocase membrane protein SecDF subunit [Macrococcus caseolyticus JCSC5402] gi|222120648|dbj|BAH17983.1| protein translocase membrane protein SecDF subunit [Macrococcus caseolyticus JCSC5402] Length = 763 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 178/700 (25%), Positives = 324/700 (46%), Gaps = 25/700 (3%) Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209 D++ ++ + + + R++ +G+SE IQ RI +QL G ++ + R++L T+ Sbjct: 52 EKEDKITPEVVKATSKTLESRVNVLGVSEPKIQIENKDRIRVQLAGVKNQNEARKILSTS 111 Query: 210 AKMSFHKVLPNNSKKGFM--FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 A ++ G G + V S T ++ Sbjct: 112 ANLTIRDANDKLLLSGKDLVQGGAKQSFDQTSNAPVVTLKLKSADKFAKITKKISQQSPN 171 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 +V E G ++ + + IN +G + Sbjct: 172 IMVIWMDFEEGKDS-YKKEAKKEEQGKQPKYVSAAGVSQEINSQNVEISGGFNGEDGLIR 230 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A +A +L +GSLP+KL V +VGA G D+++ A G+ LI LFMI Y G Sbjct: 231 AKQIADLLNSGSLPVKLTEVYSTSVGAQFGQDALHDTVLASAIGVGLIFLFMIFYYRLPG 290 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 +A S+ + + LT+ +L+ LTLP IA +VLG+G+AVD+NI++ ERI++E R +S Sbjct: 291 AIAVISLSVYIWLTMIAFNLISGVLTLPGIAALVLGVGMAVDANIIMYERIKDEIRIGRS 350 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 + + G + ++ TI D+N+T ++A +VLFF G +V+GFA + L I++ T + + Sbjct: 351 IKQAFKKGSNSSFLTILDANLTTVLAALVLFFLGTSSVKGFATMLLLGIIMIFVTQVFLS 410 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISI 554 R ++ + + D I F++ +G+S+ Sbjct: 411 RFLLKLAVNSGMFDNKFSFFGVNRKHRHDIAEGMDVQDLKSAWEHIDFVKLAKPLLGLSL 470 Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614 I ++ GLN GIDFK G ++ + + + + ++ LE+L++ + Sbjct: 471 ASIIIGSIIITMMGLNLGIDFKSGSRVDIKSEQVLKEDGLKKELETLKVPSENVVVNAEN 530 Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 P + +K N V +I +EL + I VI Sbjct: 531 PKMASVQYKDPLTKEQINDLKSTFSEKYG------HEPNVNTVSSEIGKELAKNAIKSVI 584 Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 I++I ++IY+ RF+W L ++ +L+ D + FF++F +E ++T +AAVLT+IGYS+ Sbjct: 585 IASIGIIIYVTFRFEWRMGLTSVLSLLHDAFLIIAFFSIFRLEVDVTFIAAVLTIIGYSI 644 Query: 735 NDKVVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791 ND +V +DR+R+N++ T +++ SI +T+ RS+ T + I V+ + + G Sbjct: 645 NDTIVTFDRVRENLRKLKLITTPEQIDQIVNSSIRQTMTRSINTVLTVLIVVIALMLLGA 704 Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 S I +F++ + G++ SS+FIA P+ + + K + Sbjct: 705 SSIFNFSVALLVGLISGVFSSVFIAVPLWGMLKKQQLKKS 744 >gi|315658093|ref|ZP_07910965.1| protein-export membrane protein SecDF [Staphylococcus lugdunensis M23590] gi|315496422|gb|EFU84745.1| protein-export membrane protein SecDF [Staphylococcus lugdunensis M23590] Length = 762 Score = 305 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 177/696 (25%), Positives = 318/696 (45%), Gaps = 23/696 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ RI +QL G ++ ++ R +L + A Sbjct: 54 GDKIDKKALQSTAQTLENRVNVLGVSEPRIQVEDPDRIRVQLAGVKNQNQARDVLSSQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ N G + Q E V + + + K Sbjct: 114 LTIRDANDNVKLTGKDIVQGSAKQEFKQQ-TNEPTVTFKLKDRDKFKKVTEEISKKKENM 172 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + IN G ++ A + Sbjct: 173 MVVWLDYEKGDSYHKELQKKNENDRKYVSAASVNQPINSDSVEISGGFHGQEGVKKAKQI 232 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 + +L AGSLP+KL+ + +VGA G D++ K A G+ +I LFM+ Y G VA Sbjct: 233 SELLNAGSLPVKLDELTSTSVGAQFGQDALDKTIFASFIGIAVIYLFMVGFYRLPGFVAI 292 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 293 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 352 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R ++ Sbjct: 353 YTKANRSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 412 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ K + D F++ +G+SIL I Sbjct: 413 SLLVSSNYFKKKFWLFGVKKKQRHDINEGKDVHDLKTSFERWNFVKLAKPLIGLSILILI 472 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 +L LN GIDF G ++ V +N + + V ++ + + Q K Sbjct: 473 VGFVILSIFKLNLGIDFSSGSRVDVESNHSLSQAKVEKTMKDVGLKADEIQINGDGKKQA 532 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + ++ + K + V P I +EL + + +I ++I Sbjct: 533 TIMFKHDLAKKDIAKLNDKFK------NEFGHSPSVNTVSPVIGQELAKNALKALIYASI 586 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L ++ L+ D + F+LF IE ++T +AAVLT+IGYS+ND + Sbjct: 587 GIIIYVSLRFEWRMGLSSVLALLHDAFMIVAVFSLFRIEVDITFIAAVLTIIGYSINDTI 646 Query: 739 VVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ S D++++SI +T+ RS+ T + + V+ + ++G I Sbjct: 647 VTFDRVRENLHKLKVITSPEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILLFGAPSIF 706 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +F++ + G++ SSIFIA P+ + + K + Sbjct: 707 NFSLALLVGLISGVFSSIFIAVPLWGIMKKRQLKKS 742 Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 89/252 (35%), Gaps = 4/252 (1%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 L + + N + + N + + G + Sbjct: 177 LDYEKGDSYHKELQKKNENDRKYVSAASVNQPINSDSVEISGGFHGQEGVKKAKQISELL 236 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + VG + ++ + K I I + +++ ++ AI L Sbjct: 237 NAGSLPVKLDELTSTSVGAQFGQDALDKTIFASFIGIAVIYLFMVGFYRLP-GFVAIIAL 295 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 I TL F L +AA++ +G +V+ +++Y+R++ +++ + + Sbjct: 296 TTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI---GRTLKQA 352 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 K+ + +++ I+ + +G S + FA + GI++ +++F++ +L Sbjct: 353 YTKANRSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 412 Query: 821 LFIYDWRAKNAR 832 + + Sbjct: 413 SLLVSSNYFKKK 424 >gi|317499048|ref|ZP_07957329.1| protein-export membrane protein SecD [Lachnospiraceae bacterium 5_1_63FAA] gi|316893698|gb|EFV15899.1| protein-export membrane protein SecD [Lachnospiraceae bacterium 5_1_63FAA] Length = 764 Score = 305 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 196/684 (28%), Positives = 334/684 (48%), Gaps = 12/684 (1%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + V ++ ++ +++R++ E+ + + G RI I++PG D +++ Sbjct: 55 ITYEVDGKNVSDSDMKDTVYKLQKRVEGYST-EAEVYQEGKDRINIEIPGVTDANKILDE 113 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG +SF KK + D+ V+ ++ + Sbjct: 114 LGKPGTLSFAVQKQVKVKKNGKTTTQTTLDTVLTGQNVKKAKAVTNQNQTT-------GK 166 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + +V + FD G + F + T+ NIGKP+ ++ D +V++AP + +AI G+ I G + Sbjct: 167 KEYLVALEFDAKGTKAFAKATKANIGKPIYIIYDNQVISAPNVQEAITKGECTIDGMESY 226 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A LA+ +R GSLP+KLN + V A LG ++I A V G VL+ L MI Y Sbjct: 227 EAAENLASSIRIGSLPVKLNELRSNVVSAKLGVNAIQTTVKAGVIGFVLVCLIMIAFYAV 286 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A ++ + +++ L L+ ATLTLP +AGI+LGIG+AVD+N+++ RI+EE Sbjct: 287 PGMIACVALAIYMLMMLLALNGFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGAG 346 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +S ++ GF +A S I D N+T LIA +VL+F G G V+GFA T+G+S+LISMFTA+ Sbjct: 347 KSTGAAIKSGFGKAASAIIDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALV 406 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 I R ++ + + A + + L ++ Sbjct: 407 ISRFLVYAAYHFGLRDKKWYGKPRTIKTRDFVRTGKKYVAVAGVIILIGLAALPMNRSKI 466 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 LNY ++F GG + ++ +S + Q Sbjct: 467 GSILNYDLEFSGGTASTITFKDDQKVNDSLEKQVVKAYEKVSKSTSVQSQKVKANNQMVV 526 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + ++ + + TE + IS E+ R + V+ISAI MLIYI Sbjct: 527 KSVELNLSQRKQIENTLKK-DYKVKSVTTENISSTISNEMQRDAFISVVISAICMLIYIA 585 Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 IRFK F AI LI D+ +++ + T +A +LT+IGYS+N +V++DR+ Sbjct: 586 IRFKDVKFGSSAIIALINDVLVVFAAYSVGRLSVGGTFIACMLTIIGYSINSTIVIFDRI 645 Query: 745 RKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+N+KL T + L+++SI+ TL R++ TS+ F+ VL + + G S + FA+ + Sbjct: 646 RENLKLQTIRTRDDIKALVNQSISSTLVRTINTSLTTFVMVLALFICGVSSLREFALALM 705 Query: 803 FGIVVAASSSIFIAAPILLFIYDW 826 G++ A SS+F+ P+ + Sbjct: 706 VGVIGGAFSSVFLTGPLWYMMKTR 729 Score = 111 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 74/180 (41%), Gaps = 4/180 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +V K+ I+ + +I + + + I I F + A L + + L Sbjct: 249 RSNVVSAKLGVNAIQTTVKAGVIGFVLVCL-IMIAFYAVPGMIACVALAIYMLMMLLALN 307 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F L +A ++ IG +V+ V++Y R+++ + S I + Sbjct: 308 GFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGA---GKSTGAAIKSGFGKAASAI 364 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+VL + G + FA + ++++ +++ I+ ++ Y + ++ + Sbjct: 365 IDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALVISRFLVYAAYHFGLRDKK 424 Score = 67.4 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 7/110 (6%) Query: 8 VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67 +IL +C G I + + I LGLDL GG + EVD + + Sbjct: 14 LILLIALCVFGAFITTKGITKK-------KIGRASNIELGLDLAGGVSITYEVDGKNVSD 66 Query: 68 GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ +L+ ++ ++ +++I + I D++ Sbjct: 67 SDMKDTVYKLQKRVEGYSTEAEVYQEGKDRINIEIPGVTDANKILDELGK 116 >gi|167766767|ref|ZP_02438820.1| hypothetical protein CLOSS21_01275 [Clostridium sp. SS2/1] gi|167711521|gb|EDS22100.1| hypothetical protein CLOSS21_01275 [Clostridium sp. SS2/1] Length = 764 Score = 305 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 196/684 (28%), Positives = 334/684 (48%), Gaps = 12/684 (1%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + V ++ ++ +++R++ E+ + + G RI I++PG D +++ Sbjct: 55 ITYEVDGKNVSDSDMKDTVYKLQKRVEGYST-EAEVYQEGKDRINIEIPGVTDANKILDE 113 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG +SF KK + D+ V+ ++ + Sbjct: 114 LGKPGTLSFAVQKQVKVKKNGKTTTQTTLDTVLTGQNVKKAKAVTNQNQTT-------GK 166 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + +V + FD G + F + T+ NIGKP+ ++ D +V++AP + +AI G+ I G + Sbjct: 167 KEYLVALEFDAKGTKAFAKATKANIGKPIYIIYDNQVISAPNVQEAITKGECTIDGMESY 226 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A LA+ +R GSLP+KLN + V A LG ++I A V G VL+ L MI Y Sbjct: 227 EAAENLASSIRIGSLPVKLNELRSNVVSAKLGVNAIQTTVKAGVIGFVLVCLIMIAFYAV 286 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A ++ + +++ L L+ ATLTLP +AGI+LGIG+AVD+N+++ RI+EE Sbjct: 287 PGVIACVALAIYMLMMLLALNGFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGAG 346 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +S ++ GF +A S I D N+T LIA +VL+F G G V+GFA T+G+S+LISMFTA+ Sbjct: 347 KSTGAAIKSGFGKAASAIIDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALV 406 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 I R ++ + + A + + L ++ Sbjct: 407 ISRFLVYAAYHFGLHDKKWYGKPRTIKTRDFVRTGKKYVAVAGVIILIGLAALPMNRSKI 466 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 LNY ++F GG + ++ +S + Q Sbjct: 467 GSILNYDLEFSGGTASTITFKDDQKVNDSLEKQVVKAYEKVSKSTSVQSQKVKANNQMVV 526 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + ++ + + TE + IS E+ R + V+ISAI MLIYI Sbjct: 527 KSVELNLSQRKQIENTLKK-DYKVKSVTTENISSTISNEMQRDAFISVVISAICMLIYIA 585 Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 IRFK F AI LI D+ +++ + T +A +LT+IGYS+N +V++DR+ Sbjct: 586 IRFKDVKFGSSAIIALINDVLVVFAAYSVGRLSVGGTFIACMLTIIGYSINSTIVIFDRI 645 Query: 745 RKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+N+KL T + L+++SI+ TL R++ TS+ F+ VL + + G S + FA+ + Sbjct: 646 RENLKLQTIRTRDDIKALVNQSISSTLVRTINTSLTTFVMVLALFICGVSSLREFALALM 705 Query: 803 FGIVVAASSSIFIAAPILLFIYDW 826 G++ A SS+F+ P+ + Sbjct: 706 VGVIGGAFSSVFLTGPLWYMMKTR 729 Score = 110 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 73/180 (40%), Gaps = 4/180 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +V K+ I+ + +I + + + I I F + A L + + L Sbjct: 249 RSNVVSAKLGVNAIQTTVKAGVIGFVLVCL-IMIAFYAVPGVIACVALAIYMLMMLLALN 307 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F L +A ++ IG +V+ V++Y R+++ + S I + Sbjct: 308 GFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGA---GKSTGAAIKSGFGKAASAI 364 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+VL + G + FA + ++++ +++ I+ ++ Y + + + Sbjct: 365 IDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALVISRFLVYAAYHFGLHDKK 424 Score = 67.4 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 7/110 (6%) Query: 8 VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67 +IL +C G I + + I LGLDL GG + EVD + + Sbjct: 14 LILLIALCVFGAFITTKGITKK-------KIGRASNIELGLDLAGGVSITYEVDGKNVSD 66 Query: 68 GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ +L+ ++ ++ +++I + I D++ Sbjct: 67 SDMKDTVYKLQKRVEGYSTEAEVYQEGKDRINIEIPGVTDANKILDELGK 116 >gi|196250104|ref|ZP_03148798.1| protein-export membrane protein SecD [Geobacillus sp. G11MC16] gi|196210288|gb|EDY05053.1| protein-export membrane protein SecD [Geobacillus sp. G11MC16] Length = 750 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 185/689 (26%), Positives = 328/689 (47%), Gaps = 27/689 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ ++ ++ + +RI+ +G+SE + G +RI +QL G +D + R++L T AK Sbjct: 54 GDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGENRIRVQLAGVKDQNEAREILATQAK 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + S +++ P Sbjct: 114 LTFRDVNDNVLMDGSDLVQGGAKLSFDENGQPSVAIKLKDADKFRQVTEKVYNMGPPNNI 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + ++ D + ++A +NQ I GNFT++ A L Sbjct: 174 LVIWLDFEEGVDSYQKEAGK------ADPKFISAASVNQVFNQTDVSIVGNFTVKEAQQL 227 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AG+LP++L+ + +VGA G +++ A + G+ I LFMI Y G++A Sbjct: 228 ADLLNAGALPVELHEIYSTSVGAQFGKNALQTTMLAGIIGVAAIFLFMIWFYRLPGVIAV 287 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + + L L L + LTLP IA ++LG+G+AVD+NI+ ERI+EE + +S+ + Sbjct: 288 ITLSVYIYLILLLFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSMMSA 347 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G +++TIFD+NIT +IA VVLF +G +V+GFA + +SI+ S TA+ R ++ Sbjct: 348 FRAGNRGSFATIFDANITTIIAGVVLFIYGTSSVKGFATMLIISIVASFVTAVYGTRLLL 407 Query: 512 IFIIRYKKMKSIDINPLSRFFLI-------------PDCIAIQFMRARFWGVGISILFSI 558 ++ + + + I F++ SI +I Sbjct: 408 GLLVSSRWLDKKPGYFGVKKSEILNIAETTDETEVPTKFDRWDFIKHSKKFFLFSIALTI 467 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + LF GLN GIDF G ++ V +++P++ + E L + Sbjct: 468 AGVISLFAMGLNLGIDFTSGTRIEVTSSQPIEAKELSDYFEQLGHKPEDVVLSGTDGKTG 527 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V D ++ +K N V P + ++L R ++ V+IS+I Sbjct: 528 VVRLIGVLDKQEIAKIKSELKTTYG------HEPNISTVSPVVGKQLARNALIAVLISSI 581 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 +++Y+ IRF+W AL AI L+ D + F+L +E +LT +AAVLT+IGYS+ND + Sbjct: 582 GIILYMTIRFEWRMALAAIIALLHDAFFIITVFSLTRLEVDLTFIAAVLTIIGYSINDTI 641 Query: 739 VVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R M + T R ++++++ +T RS+ T + +V+ + ++G I + Sbjct: 642 VTFDRIRDLMKKRKVKTVDDLRHIVNRALQQTFTRSINTVLTVLFTVIALLLFGSEAIRN 701 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F + + G++ SS+FIAA + L Sbjct: 702 FNLALLAGLLCGVYSSLFIAAQLWLVWKG 730 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 5/93 (5%) Query: 43 RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97 I LGLDL+GG ++ EV D LQ L + G+ + N+ Sbjct: 31 NIKLGLDLQGGFEVLYEVKPAKKGDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGENR 90 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 I + A + + + + + +N + Sbjct: 91 IRVQLAGVKDQNEAREILATQAKLTFRDVNDNV 123 >gi|269216135|ref|ZP_06159989.1| putative protein-export membrane protein [Slackia exigua ATCC 700122] gi|269130394|gb|EEZ61472.1| putative protein-export membrane protein [Slackia exigua ATCC 700122] Length = 882 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 161/858 (18%), Positives = 305/858 (35%), Gaps = 110/858 (12%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60 R N WL+I ++ + + +P P++RI+ GLD++GG +VL Sbjct: 18 RRNLWLLIATIVLVLGSIFLFMP---------------PQDRINQGLDIQGGLSVVLSAN 62 Query: 61 --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTL 117 D D + ++ + S + G ++ Q N+I + + + + Sbjct: 63 STDGSDVSSDDMEKSRSIIESRVNALGASEAVVQLQGDNQILVQIPGISDTQEALNTIGK 122 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIV--LSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 + ++L+ ++ E + + + E + + Sbjct: 123 TGKLEFARLDSFTDADVAKKIDAGEYMTQKTATDAYGTTLPTGESELAGMTVEPGTYTPI 182 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235 ++ I+R+ R L G + + P K + Sbjct: 183 VTGDDIERITVDRASETSADYAVNLALNSEGGKAFAEASTDLAPTKGKIVIILDGVVQSA 242 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 + + +V I+G + Sbjct: 243 PAVQSAIPDGRVSITGNYTLDEAK------------------------------------ 266 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 + + +F E A + L +L + + + Sbjct: 267 -------------SLQTVLESGSLPIDFEFEQAQTVGPTLGQDALHSGVLVAAVGLLLVM 313 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 L Y+G I A +L+ + + + L L +L+L Sbjct: 314 LYLLVFYRGLGFITAAAMLVFAALYLG-----------------ILAGLSRLGLFSLSLA 356 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL IG+A DS+IL ER REE R +SV + G T D+++ L++ + Sbjct: 357 GIAGIVLTIGMAADSSILTLERFREEIRMGRSVRAASMTGVRHGILTSIDADLVTLVSAL 416 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF---- 531 LFF +V+GF +T+ L I + + ++ + + + Sbjct: 417 TLFFLASASVKGFGLTLALGIFCDIVMMLLFKAPIIRLLAPRLIARHPGFWGVKDCENAA 476 Query: 532 ---------------FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576 ++ R + ++ + + + L+ G+ +GI+F Sbjct: 477 PYFEGSSVAPEGYKIPGRFIKRDFAILKYRKVTLALAAVAIVAVVGLIGIRGIEFGIEFV 536 Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 GG + V +R GD Q + ++ + T V Sbjct: 537 GGTSVSFHDTGDVTTEQLRDAFADAGEGDAVIQTTSADGAEGFLVRTTTTSAEDATAVAN 596 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695 V +GP +I+ ++ ++S + ++IYI +RF+ + + Sbjct: 597 QVAGSFGWSTDSFE---VTTIGPDWGTSVIKASVLAFLVSLVLIIIYISLRFRDYKMGVT 653 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 A+ L+ D+ G +AL G E +AA+LT++GYS+ D VVV+ R+ +NMK + Sbjct: 654 AVVALLHDLILVFGIYALLGREVTPNTIAAILTILGYSLYDTVVVFHRINENMKDESIKC 713 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 +F + + SINE L RS+ TS+ + I V+ M ++GG + FA+ M G+V A SS I Sbjct: 714 TFMSMANHSINEVLMRSMNTSITSLIPVVAMLLFGGETLKDFALAMTIGLVAGAYSSYAI 773 Query: 816 AAPILLFIYDWRAKNARI 833 A P+ + AR+ Sbjct: 774 ATPLYAVWKTTEERFARL 791 >gi|331090635|ref|ZP_08339486.1| hypothetical protein HMPREF9477_00129 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401075|gb|EGG80670.1| hypothetical protein HMPREF9477_00129 [Lachnospiraceae bacterium 2_1_46FAA] Length = 712 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 201/686 (29%), Positives = 334/686 (48%), Gaps = 25/686 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q ++ + ++ +++R++Q Q G RI I++PG D +++ + Sbjct: 51 ITYQAKGEKPTEKEMSDTVYKLQKRVEQYSTEAGVYQ-EGDDRISIEIPGVTDANKVLEE 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG + F DS+GN L V+ + + + Sbjct: 110 LGKPGSLEFQ-------------------DSEGNVVLDGTDVKSATAQIQEDNSGNKKNM 150 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 V + + G ++F E T N+GKP+++V DG+V+++P +N AI +G+A I G+FT Sbjct: 151 ----VSLEMTKEGKKKFAEATEKNLGKPISIVYDGQVISSPTVNSAITNGQAVIEGSFTY 206 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A LA+ +R G L ++L + VGA LG ++I A GL +I +FM +Y Sbjct: 207 EEAEELASTIRIGGLQVELEEINSSVVGAQLGEEAISTSLMAGAIGLAIIFVFMCAVYLL 266 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 GL + ++ + + L LL+ TLTLP IAGI+LGIG+AVD+N+++ R++EE + Sbjct: 267 PGLASSIALCIYTGIILVLLNAFDITLTLPGIAGIILGIGMAVDANVIIFARVKEELGEG 326 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 ++V +L GF +A S I D NIT LIA +VL G G V+GFA T+ L I++SMFTA+ Sbjct: 327 KNVKTALKKGFQKALSAILDGNITTLIAALVLGLKGTGTVKGFAQTLALGIVVSMFTALV 386 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + R ++ I + A + +S ++ Sbjct: 387 VTRIIIFAFYAVGLKSEKLYGVQKERKTINFLGKRKICFAVSIALALSGFVAMGVQKSQG 446 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 LNY ++FKGG V N + + S + + +N +K + Sbjct: 447 NDILNYSLEFKGGTSTNVTFNEDFSIKELDSKVTPVIEKVTGDKNVQMQKVKGTKQVIIK 506 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 ++ + + K + + +S E+ IV V+I+ + MLIYIW Sbjct: 507 TQALDLDKREALNKALVDNFKVDEKKITYSNISSTVSSEMRSDAIVAVLIATVCMLIYIW 566 Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 +RFK + FA AI L+ D+ L F+A+ + T +A +LT++GYS+N +V++DR+ Sbjct: 567 LRFKDFRFASSAIIALLHDVLVVLAFYAIARVSVGNTFIACMLTIVGYSINATIVIFDRI 626 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ +K S D+++KSI +TL RS+YTS F+ V + V G S + FA P+ G Sbjct: 627 REELKAGRRKDSLEDVVNKSITQTLTRSIYTSFTTFVMVAVLYVLGVSSVKEFAAPLMVG 686 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 +VV A SS+ I + + K Sbjct: 687 VVVGAYSSVCITGSLWYVLKKKFVKK 712 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 77/179 (43%), Gaps = 4/179 (2%) Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 +VG ++ E I ++ I + +++ + L + L + L F Sbjct: 231 SVVGAQLGEEAISTSLMAGAIGLAIIFVFMCAVY-LLPGLASSIALCIYTGIILVLLNAF 289 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 I L +A ++ IG +V+ V+++ R+++ + + + + K + L + Sbjct: 290 DITLTLPGIAGIILGIGMAVDANVIIFARVKEELGE---GKNVKTALKKGFQKALSAILD 346 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I+ L + + G + FA +A GIVV+ +++ + I+ Y K+ ++ Sbjct: 347 GNITTLIAALVLGLKGTGTVKGFAQTLALGIVVSMFTALVVTRIIIFAFYAVGLKSEKL 405 Score = 65.9 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 15/155 (9%), Positives = 49/155 (31%), Gaps = 2/155 (1%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 I LGLDL GG + + + + +L+ +++ ++ ++I++ Sbjct: 37 KNIKLGLDLAGGVSITYQAKGEKPTEKEMSDTVYKLQKRVEQYSTEAGVYQEGDDRISIE 96 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 + +++ + + + N+ ++ ++E Sbjct: 97 IPGVTDANKVLEELGKPGSLEFQDSEGNVVLDGTDVKSATAQIQE--DNSGNKKNMVSLE 154 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196 + E ++ + + + +I P Sbjct: 155 MTKEGKKKFAEATEKNLGKPISIVYDGQVISSPTV 189 >gi|296331690|ref|ZP_06874159.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675351|ref|YP_003867023.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis subsp. spizizenii str. W23] gi|296151285|gb|EFG92165.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413595|gb|ADM38714.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis subsp. spizizenii str. W23] Length = 737 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 194/694 (27%), Positives = 338/694 (48%), Gaps = 28/694 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++E + +R + +G+SE IQ G+ RI +QL G + +R R++L T A+ Sbjct: 53 GDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNDRIRVQLAGVTNQNRAREILATEAQ 112 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 +SF G + + Y + I I L A + V Sbjct: 113 LSFRDTNDKELLN----GSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKK---VM 165 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + + K + ++AP ++Q + + I G FT++ A L Sbjct: 166 KMAPNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSQELNTTDVTIEGQFTVQEAKDL 225 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A++L AG+LP+KL +VGA G ++++ A + G+ +I LFM+ Y G +A Sbjct: 226 ASILNAGALPVKLTEKYSTSVGAQFGQQALHETVFAGIVGIAIIFLFMLFYYRLPGFIAV 285 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + + +TL + + A LTLP IA ++LG+G+AVD+NI+ ERI+EE + +SV + Sbjct: 286 ITLSVYIYITLQVFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+++TI D+N+T +IA VVLF FG +V+GFA + LSIL S TA+ + R ++ Sbjct: 346 FRSGNRRSFATILDANVTTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405 Query: 512 IFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILFSI 558 ++ + + I F R + IS +I Sbjct: 406 ALLVESRWLDRKKGWFGVNKKYIMNIQDTDENTEPHTPFQKWDFTSKRKYFFIISSAITI 465 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I +L LN GIDF G ++ V ++ + V + ESL + + +KN Sbjct: 466 AGIIILLVFKLNLGIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTIVLSGEKKNIG 525 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V D +V K T N V P + +EL R + + I++I Sbjct: 526 VARFVGVPDKETIAKVKTHFK------DKYGTEPNVSTVSPTVGKELARNALYALAIASI 579 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF++ A+ AI +L+ D + F++ +E ++T +AA+LT+IGYS+ND + Sbjct: 580 GIIIYVSIRFEYRMAIAAIASLLYDAFFIVTVFSITRLEVDVTFIAAILTIIGYSINDTI 639 Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R++MK +++ S+ +T RS+ T + I V+ + ++G S I + Sbjct: 640 VTFDRIREHMKKRKPKTFADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFGASSITN 699 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F++ + G++ SS++IAA I L K Sbjct: 700 FSVALLVGLLTGVYSSLYIAAQIWLVWKGKELKK 733 Score = 124 bits (310), Expect = 7e-26, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 88/219 (40%), Gaps = 4/219 (1%) Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 + G Q + T + + VG + ++ + + + Sbjct: 203 SQELNTTDVTIEGQFTVQEAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHETVFAG 262 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 I+ + +++ ++ A+ TL + I TL F L +AA++ +G + Sbjct: 263 IVGIAIIFLFMLFYYRLP-GFIAVITLSVYIYITLQVFDWMNAVLTLPGIAALILGVGMA 321 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 V+ ++ Y+R+++ +KL S R + + ++ I+ + + ++G S Sbjct: 322 VDANIITYERIKEELKL---GKSVRSAFRSGNRRSFATILDANVTTIIAAVVLFIFGTSS 378 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + FA + I+ + +++F++ +L + + R + + Sbjct: 379 VKGFATMLILSILTSFITAVFLSRFLLALLVESRWLDRK 417 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 54/419 (12%), Positives = 118/419 (28%), Gaps = 22/419 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + + + IG + N I+LGLDL+GG ++ +V Sbjct: 1 MKKGRL-IAFFLFVLLIGTGLGYFTKPA------------ANNITLGLDLQGGFEVLYDV 47 Query: 61 DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115 D L + L G+ +++ + ++I + A + + + Sbjct: 48 QPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNDRIRVQLAGVTNQNRAREIL 107 Query: 116 TLFLQGVNSKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 Q N + LV K+ + I + ++ E+ ++ + Sbjct: 108 ATEAQLSFRDTNDKELLNGSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKKVMKM 167 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 ++ I + +++ + + +++ V Sbjct: 168 APNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSQELNTTDVTIEGQFTVQEAKDLAS 227 Query: 234 RDSDGN--QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + G L E G + + I F M I Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHETVFAGIVGIAIIFLFMLFYYRLPGFIAVIT 287 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + + + +V +P A I G A I+ L + ++ Sbjct: 288 LSVYIYITLQVFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 G +I + V++ +F + + SI + I + L L A Sbjct: 348 SGNRRSFATILDANVTTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLA 406 >gi|321312293|ref|YP_004204580.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis BSn5] gi|320018567|gb|ADV93553.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis BSn5] Length = 737 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 197/694 (28%), Positives = 339/694 (48%), Gaps = 28/694 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++E + +R + +G+SE IQ G++RI +QL G + +R R++L T A+ Sbjct: 53 GDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILATEAQ 112 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 +SF G + + Y + I I L A + V Sbjct: 113 LSFRDTNDKELLN----GSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKK---VM 165 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + + K + ++AP ++Q + + I G FT++ A L Sbjct: 166 KMAPNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSQELNTTDVTIEGQFTVQEAKDL 225 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A++L AG+LP+KL +VGA G +++ A + G+ +I LFM+ Y GL+A Sbjct: 226 ASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAV 285 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + + +TL + + A LTLP IA ++LG+G+AVD+NI+ ERI+EE + +SV + Sbjct: 286 ITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+++TIFD+NIT +IA VVLF FG +V+GFA + LSIL S TA+ + R ++ Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405 Query: 512 IFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILFSI 558 ++ + + I F R + S ++ Sbjct: 406 ALLVESRWLDRKKGWFGVNKKHIMDIQDTDENTEPHTPFQKWDFTSKRKYFFIFSSAVTV 465 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I +L LN GIDF G ++ V ++ + V + ESL + + + N Sbjct: 466 AGIIILLVFRLNLGIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTVVLSGEKSNIG 525 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V D +V K K N V P + +EL R + V I++I Sbjct: 526 VARFVGVPDKETIAKVKTYFKDKYGSE------PNVSTVSPTVGKELARNALYAVAIASI 579 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF++ A+ AI +L+ D + FF++ +E ++T +AA+LT+IGYS+ND + Sbjct: 580 GIIIYVSIRFEYKMAIAAIASLLYDAFFIVTFFSITRLEVDVTFIAAILTIIGYSINDTI 639 Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R++MK +++ S+ +T RS+ T + I V+ + ++G S I + Sbjct: 640 VTFDRVREHMKKRKPKTFADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFGASSITN 699 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F+I + G++ SS++IAA I L K Sbjct: 700 FSIALLVGLLTGVYSSLYIAAQIWLAWKGRELKK 733 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 87/219 (39%), Gaps = 4/219 (1%) Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 + G Q + T + + VG + ++ + + Sbjct: 203 SQELNTTDVTIEGQFTVQEAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAG 262 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 I+ + +++ ++ L A+ TL + I TL F L +AA++ +G + Sbjct: 263 IVGIAIIFLFMLFYYRLP-GLIAVITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMA 321 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 V+ ++ Y+R+++ +KL S R + ++ I+ + + ++G S Sbjct: 322 VDANIITYERIKEELKL---GKSVRSAFRSGNRRSFATIFDANITTIIAAVVLFIFGTSS 378 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + FA + I+ + +++F++ +L + + R + + Sbjct: 379 VKGFATMLILSILTSFITAVFLSRFLLALLVESRWLDRK 417 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 54/419 (12%), Positives = 119/419 (28%), Gaps = 22/419 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + + + IG + N I+LGLDL+GG ++ +V Sbjct: 1 MKKGRL-IAFFLFVLLIGTGLGYFTKPA------------ANNITLGLDLQGGFEVLYDV 47 Query: 61 DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115 D L + L G+ +++ + N+I + A + + + Sbjct: 48 QPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107 Query: 116 TLFLQGVNSKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 Q N + LV K+ + I + ++ E+ ++ + Sbjct: 108 ATEAQLSFRDTNDKELLNGSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKKVMKM 167 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 ++ I + +++ + + +++ V Sbjct: 168 APNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSQELNTTDVTIEGQFTVQEAKDLAS 227 Query: 234 RDSDGN--QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + G L E G + + I F M I Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAVIT 287 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + + + ++ +P A I G A I+ L + ++ Sbjct: 288 LSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 G +I+ + V++ +F + + SI + I + L L A Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLA 406 >gi|138896150|ref|YP_001126603.1| bifunctional preprotein translocase subunit SecD/SecF [Geobacillus thermodenitrificans NG80-2] gi|134267663|gb|ABO67858.1| Protein-export membrane protein [Geobacillus thermodenitrificans NG80-2] Length = 750 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 185/689 (26%), Positives = 328/689 (47%), Gaps = 27/689 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ ++ ++ + +RI+ +G+SE + G +RI +QL G +D + R++L T AK Sbjct: 54 GDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGENRIRVQLAGVKDQNEAREILATQAK 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V N G + S +++ P Sbjct: 114 LTFRDVNDNVLMDGSDLVQGGAKLSFDENGQPSVAIKLKDADKFRQVTEKVYNMGPPNNI 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + ++ D + ++A +NQ I GNFT++ A L Sbjct: 174 LVIWLDFEEGVDSYQKEAGK------ADPKFISAASVNQVFNQTDVSIVGNFTVKEAQQL 227 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AG+LP++L+ + +VGA G +++ A + G+ I LFMI Y G++A Sbjct: 228 ADLLNAGALPVELHEIYSTSVGAQFGKNALQTTMLAGIIGVAAIFLFMIWFYRLPGVIAV 287 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + + L L L + LTLP IA ++LG+G+AVD+NI+ ERI+EE + +S+ + Sbjct: 288 ITLSVYIYLILLLFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSMMSA 347 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G +++TIFD+NIT +IA VVLF +G +V+GFA + +SI+ S TA+ R ++ Sbjct: 348 FRAGNRGSFATIFDANITTIIAGVVLFIYGTSSVKGFATMLIISIVASFVTAVYGTRLLL 407 Query: 512 IFIIRYKKMKSIDINPLSRFFLI-------------PDCIAIQFMRARFWGVGISILFSI 558 ++ + + + I F++ SI +I Sbjct: 408 GLLVSSRWLDKKPGYFGVKKSEILNIAETTDETEVPTKFDRWDFIKHSKKFFLFSIALTI 467 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + LF GLN GIDF G ++ V +++P++ + E L + Sbjct: 468 AGVISLFAMGLNLGIDFTSGTRIEVTSSQPIEAKELSDYFEQLGHKPEDVVLSGTDGKTG 527 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V D ++ +K N V P + ++L R ++ V+IS+I Sbjct: 528 VVRLIGVLDKQEIAKIKSELKTTYG------HEPNISTVSPVVGKQLARNALIAVLISSI 581 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 +++Y+ IRF+W AL AI L+ D + F+L +E +LT +AAVLT+IGYS+ND + Sbjct: 582 GIILYVTIRFEWRMALAAIIALLHDAFFIITVFSLTRLEVDLTFIAAVLTIIGYSINDTI 641 Query: 739 VVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R M + T R ++++++ +T RS+ T + +V+ + ++G I + Sbjct: 642 VTFDRIRDLMKKRKVKTVDDLRHIVNRALQQTFTRSINTVLTVLFTVIALLLFGSEAIRN 701 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F + + G++ SS+FIAA + L Sbjct: 702 FNLALLAGLLCGVYSSLFIAAQLWLVWKG 730 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 5/93 (5%) Query: 43 RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97 I LGLDL+GG ++ EV D LQ L + G+ + N+ Sbjct: 31 NIKLGLDLQGGFEVLYEVKPAKKGDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGENR 90 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 I + A + + + + + +N + Sbjct: 91 IRVQLAGVKDQNEAREILATQAKLTFRDVNDNV 123 >gi|291560707|emb|CBL39507.1| protein translocase subunit secF/protein translocase subunit secD [butyrate-producing bacterium SSC/2] Length = 764 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 196/684 (28%), Positives = 334/684 (48%), Gaps = 12/684 (1%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + V ++ ++ +++R++ E+ + + G RI I++PG D +++ Sbjct: 55 ITYEVDGKNVSDSDMKDTVYKLQKRVEGYST-EAEVYQEGKDRINIEIPGVTDANKILDE 113 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG +SF KK + D+ V+ ++ + Sbjct: 114 LGKPGTLSFTVQKQVKVKKNGKTTTQTTLDTVLTGQNVKKAKAVTNQNQTT-------GK 166 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + +V + FD G + F + T+ NIGKP+ ++ D +V++AP + +AI G+ I G + Sbjct: 167 KEYLVALEFDAKGTKAFAKATKANIGKPIYIIYDNQVISAPNVQEAITKGECTIDGMESY 226 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A LA+ +R GSLP+KLN + V A LG ++I A V G VL+ L MI Y Sbjct: 227 EAAENLASSIRIGSLPVKLNELRSNVVSAKLGVNAIQTTVKAGVIGFVLVCLIMIAFYAV 286 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A ++ + +++ L L+ ATLTLP +AGI+LGIG+AVD+N+++ RI+EE Sbjct: 287 PGMIACVALAIYMLMMLLALNGFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGAG 346 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +S ++ GF +A S I D N+T LIA +VL+F G G V+GFA T+G+S+LISMFTA+ Sbjct: 347 KSTGAAIKSGFGKAASAIIDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALV 406 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 I R ++ + + A + + L ++ Sbjct: 407 ISRFLVYAAYHFGLRDKKWYGKPRTIKTRDFVRTGKKYVAVAGVIILIGLAALPMNRSKI 466 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 LNY ++F GG + ++ +S + Q Sbjct: 467 GSILNYDLEFSGGTASTITFKDDQKVNDSLEKQVVKAYEKVSKSTSVQSQKVKANNQMVV 526 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + ++ + + TE + IS E+ R + V+ISAI MLIYI Sbjct: 527 KSVELNLSQRKQIESTLKK-DYKVKSVTTENISSTISNEMQRDAFISVVISAICMLIYIA 585 Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 IRFK F AI LI D+ +++ + T +A +LT+IGYS+N +V++DR+ Sbjct: 586 IRFKDVKFGSSAIIALINDVLVVFAAYSVGRLSVGGTFIACMLTIIGYSINSTIVIFDRI 645 Query: 745 RKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+N+KL T + L+++SI+ TL R++ TS+ F+ VL + + G S + FA+ + Sbjct: 646 RENLKLQTIRTRDDIKALVNQSISSTLVRTINTSLTTFVMVLALFICGVSSLREFALALM 705 Query: 803 FGIVVAASSSIFIAAPILLFIYDW 826 G++ A SS+F+ P+ + Sbjct: 706 VGVIGGAFSSVFLTGPLWYMMKTR 729 Score = 111 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 74/180 (41%), Gaps = 4/180 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +V K+ I+ + +I + + + I I F + A L + + L Sbjct: 249 RSNVVSAKLGVNAIQTTVKAGVIGFVLVCL-IMIAFYAVPGMIACVALAIYMLMMLLALN 307 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F L +A ++ IG +V+ V++Y R+++ + S I + Sbjct: 308 GFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGA---GKSTGAAIKSGFGKAASAI 364 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+VL + G + FA + ++++ +++ I+ ++ Y + ++ + Sbjct: 365 IDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALVISRFLVYAAYHFGLRDKK 424 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 7/110 (6%) Query: 8 VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67 +IL +C G I + + I LGLDL GG + EVD + + Sbjct: 14 LILLIALCVFGAFITTKGITKK-------KIGRASNIELGLDLAGGVSITYEVDGKNVSD 66 Query: 68 GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ +L+ ++ ++ +++I + I D++ Sbjct: 67 SDMKDTVYKLQKRVEGYSTEAEVYQEGKDRINIEIPGVTDANKILDELGK 116 >gi|291485174|dbj|BAI86249.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis subsp. natto BEST195] Length = 737 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 196/694 (28%), Positives = 339/694 (48%), Gaps = 28/694 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++E + +R + +G+SE IQ G++RI +QL G + +R R++L T A+ Sbjct: 53 GDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILATEAQ 112 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 +SF G + + Y + I I L A + V Sbjct: 113 LSFRDTNDKELLN----GSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKK---VM 165 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + + K + ++AP +++ + + I G FT++ A L Sbjct: 166 KMAPNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSKELNTTDVTIEGQFTVQEAKDL 225 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A++L AG+LP+KL +VGA G +++ A + G+ +I LFM+ Y GL+A Sbjct: 226 ASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAV 285 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + + +TL + + A LTLP IA ++LG+G+AVD+NI+ ERI+EE + +SV + Sbjct: 286 ITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+++TIFD+NIT +IA VVLF FG +V+GFA + LSIL S TA+ + R ++ Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405 Query: 512 IFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILFSI 558 ++ + + I F R + S ++ Sbjct: 406 ALLVESRWLDRKKGWFGVNKKHIMDIQDTDENTEPHTPFQKWDFTSKRKYFFIFSSAVTV 465 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I +L LN GIDF G ++ V ++ + V + ESL + + + N Sbjct: 466 AGIIILLVFRLNLGIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTVVLSGEKSNIG 525 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V D +V K K N V P + +EL R + V I++I Sbjct: 526 VARFVGVPDKETIAKVKTYFKDKYGSE------PNVSTVSPTVGKELARNALYAVAIASI 579 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF++ A+ AI +L+ D + FF++ +E ++T +AA+LT+IGYS+ND + Sbjct: 580 GIIIYVSIRFEYKMAIAAIASLLYDAFFIVTFFSITRLEVDVTFIAAILTIIGYSINDTI 639 Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R++MK +++ S+ +T RS+ T + I V+ + ++G S I + Sbjct: 640 VTFDRVREHMKKRKPKTFADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFGASSITN 699 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F+I + G++ SS++IAA I L K Sbjct: 700 FSIALLVGLLTGVYSSLYIAAQIWLAWKGRELKK 733 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 87/219 (39%), Gaps = 4/219 (1%) Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 K G Q + T + + VG + ++ + + Sbjct: 203 SKELNTTDVTIEGQFTVQEAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAG 262 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 I+ + +++ ++ L A+ TL + I TL F L +AA++ +G + Sbjct: 263 IVGIAIIFLFMLFYYRLP-GLIAVITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMA 321 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 V+ ++ Y+R+++ +KL S R + ++ I+ + + ++G S Sbjct: 322 VDANIITYERIKEELKL---GKSVRSAFRSGNRRSFATIFDANITTIIAAVVLFIFGTSS 378 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + FA + I+ + +++F++ +L + + R + + Sbjct: 379 VKGFATMLILSILTSFITAVFLSRFLLALLVESRWLDRK 417 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 49/419 (11%), Positives = 113/419 (26%), Gaps = 22/419 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + + + IG + N I+LGLDL+GG ++ +V Sbjct: 1 MKKGRL-IAFFLFVLLIGTGLGYFTKPA------------ANNITLGLDLQGGFEVLYDV 47 Query: 61 DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115 D L + L G+ +++ + N+I + A + + + Sbjct: 48 QPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107 Query: 116 TLFLQGVNSKLNVD---PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172 Q N +L+ ++ ++ + + A + + Sbjct: 108 ATEAQLSFRDTNDKELLNGSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKKVMKM 167 Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232 + ++ P + + + + + Sbjct: 168 APNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSKELNTTDVTIEGQFTVQEAKDLAS 227 Query: 233 LRDSDGNQY-LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + ++ L E G + + I F M I Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAVIT 287 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + + + ++ +P A I G A I+ L + ++ Sbjct: 288 LSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 G +I+ + V++ +F + + SI + I + L L A Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLA 406 >gi|311742284|ref|ZP_07716093.1| protein-export membrane protein SecD [Aeromicrobium marinum DSM 15272] gi|311313912|gb|EFQ83820.1| protein-export membrane protein SecD [Aeromicrobium marinum DSM 15272] Length = 765 Score = 303 bits (776), Expect = 7e-80, Method: Composition-based stats. Identities = 199/725 (27%), Positives = 359/725 (49%), Gaps = 20/725 (2%) Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + GV + P + L +I + + + + ++++E+IR R+D +G++E Sbjct: 17 IAGVLALAFTQPAQLGLDLRGGTQIVFETQSTDRVEADAESTDRALEVIRGRVDALGVAE 76 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 +I R G RI+++LPG QDP + +G TA++SFH+V+ + + + + Sbjct: 77 PSIARSGERRIIVELPGLQDPREAAETIGQTAQLSFHEVIQPVAPGQGAPEGQLVVPDEQ 136 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKT-HKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 L+ V + G ++ A A + + VV++ F G + ++ Sbjct: 137 GTRLLLGPVAVDGEGVSDAAATTVQQGLGEWVVNVDFAGPGRDGWNQLVAAACANTAGGQ 196 Query: 298 LDGRVLTAPVINQAIP---------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 VL +I+ QI+GNFT ETA L+ +++ G+LP+ L ++E Sbjct: 197 RVAIVLDDQIISSPAVQPSLCASGGGNSTQITGNFTQETAEDLSVLIKGGALPVPLELIE 256 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 +R VGA LG +I A + G++L LF++++Y G +A ++ ++ LL + Sbjct: 257 QRTVGATLGEAAIDASIEAAIIGIILTGLFIVLVYRVIGFLATLALASYALIAFGLLVGI 316 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV--FCSLDMGFSRAYSTIFDS 466 GATLTLP +AG VL IGLA+D+N+LV ER REE ++ +L GFS+A+S I DS Sbjct: 317 GATLTLPGLAGFVLAIGLAIDANVLVFERAREEYTEHPDHGLAPALKTGFSKAWSAILDS 376 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID-- 524 N+T LIA +LFF G V+GF +T+ + ++ SM +A+ I R + F ++ ++S Sbjct: 377 NVTTLIAAALLFFLASGPVKGFGVTLSIGVIASMVSALVIARVLTEFAVKRSVLRSNPGV 436 Query: 525 --INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 I+ R MR + I+ ++ SI + GL+ G++F GG L Sbjct: 437 SGISRTGRIRQWLTESGPDLMRRSGTWLAITAAVAVVSIGGIVVRGLDLGVEFTGGRLLE 496 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 PVD+ V R + Q + V +++ + Sbjct: 497 YSTGSPVDVEVAREAVSDAGFPRAIVQESSSDG---VTENITVRVEEISDDEAVAIEEAV 553 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 E+ ST E++ + +EL K ++ I+ A ++Y+ RF+W +A+ A +++ Sbjct: 554 GEVGDGSTKIRDELLTASLGQELRNKALIAFAIAISAQMLYLSFRFRWTYAVAAQVSMVS 613 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + +G FA +G + +AAVL++IG +VND +V++DR+R+ T R++++ Sbjct: 614 VVLTVVGIFAWWGKPIDGVFLAAVLSIIGLAVNDTIVIFDRIRERTAENVTR-PLREVVN 672 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 +I +T+ R++ T + A + +AV GG + FAI + G+ + S+IF A+ + + Sbjct: 673 SAILQTIPRTINTGLGAIFILAALAVLGGDSLKDFAIALILGLSIGILSTIFTASALAIV 732 Query: 823 IYDWR 827 + + Sbjct: 733 LEERW 737 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 62/246 (25%), Gaps = 31/246 (12%) Query: 8 VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD--- 64 L ++ G+L LGLDLRGG+ +V E D Sbjct: 9 RALAALAVIAGVLALAFT----------------QPAQLGLDLRGGTQIVFETQSTDRVE 52 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVN 123 + +R + G+ S+ + +I + + A+ + Q Sbjct: 53 ADAESTDRALEVIRGRVDALGVAEPSIARSGERRIIVELPGLQDPREAAETIGQTAQLSF 112 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID---QIGISEST 180 + + + E +V+ +++ + E + Q G+ E Sbjct: 113 H----EVIQPVAPGQGAPEGQLVVPDEQGTRLLLGPVAVDGEGVSDAAATTVQQGLGEWV 168 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + + T VL + GN Sbjct: 169 VNVDFAGPGRDGWNQLV----AAACANTAGGQRVAIVLDDQIISSPAVQPSLCASGGGNS 224 Query: 241 YLVEDK 246 + Sbjct: 225 TQITGN 230 >gi|325262045|ref|ZP_08128783.1| protein-export membrane protein SecDF [Clostridium sp. D5] gi|324033499|gb|EGB94776.1| protein-export membrane protein SecDF [Clostridium sp. D5] Length = 741 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 194/692 (28%), Positives = 332/692 (47%), Gaps = 10/692 (1%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q ++ ++ ++ +++R++Q E+T+ + G RI I++PG +D +++ Sbjct: 51 ITYQVKGEKPSQSDMDDTIYKLQRRVEQYST-EATVYQEGEDRISIEIPGVKDANKILDE 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFG--VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 LG + F + + + ++ D + + + ++G + A A Sbjct: 110 LGQPGSLYFIREKDSEGTANYSLDSSGKYKLDKTIEELQEDGSIVLNGTDVKNAQAATTQ 169 Query: 264 K---THKPVVDISFDEMGARRFFEVTRDNI--GKPLAVVLDGRVLTAPVINQAIPSGKAQ 318 + +V +SF + G +F T+ + + +A+ DG +++ P +N I G+AQ Sbjct: 170 DDLKNKENIVQLSFTKDGTEKFAAATKSAVAAKETIAIYYDGELISVPSVNTEIKDGEAQ 229 Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378 ISG+ T E A LA+ +R G L ++L + VGA LG ++I A GL L+ +F Sbjct: 230 ISGSMTYEEADKLASTIRIGGLSLQLEELRSNVVGAQLGEEAISTSLKAGAIGLALVFIF 289 Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438 M +Y GL A ++ + L L LL+ TLTLP IAGI+LGIG+AVD+N+++ R+ Sbjct: 290 MCFVYLLPGLAASIALIIYTGLILVLLNAFDITLTLPGIAGIILGIGMAVDANVIIFARV 349 Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498 +EE +SV +L+ GF +A S I D NIT LIA VL+ G G V+GFA T+ L I++ Sbjct: 350 KEELTAGKSVRSALNAGFHKAMSAILDGNITTLIAAAVLWLKGSGTVKGFAQTLALGIVV 409 Query: 499 SMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557 SMFTA+ I R ++ + + I + + + Sbjct: 410 SMFTALVITRLIVYSFYAVGIHNEKVYGRVKAERKPIDFLGKKKAFFGISIALILVGFVF 469 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617 + LNY ++FKGG V + L + N+ L N +K Sbjct: 470 MGINGGQGKGVLNYSLEFKGGTSTNVTFEQEYSLEEIDKNIVPLIEEATGDNNVQVQKVE 529 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 ++ + K + TE + +S E+ + I+ V+I+ Sbjct: 530 GTSQVIFKTQTLELDKREAFNKAMVDNFKVNEDEITTENISSTVSSEMRQDAIIAVLIAT 589 Query: 678 IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 I ML+YIW RFK FA A+ L+ D+ L F+ + + T +A +LT++GYS+N Sbjct: 590 ICMLLYIWFRFKDIRFATSAVLALLHDVLIVLAFYVIARVSVGNTFIACMLTIVGYSINA 649 Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 +V++DR+R+ MK +L+++ I TL RS+YTS+ F+ V + + G S I Sbjct: 650 TIVIFDRIREEMKTKKRGEDLSELVNRCITRTLTRSIYTSLTTFVMVAVLFILGVSSIKE 709 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 FA+P+ GI+ A SS+ I + + Sbjct: 710 FALPLMVGIICGAYSSVCITGALWYVMKKRSK 741 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 86/250 (34%), Gaps = 4/250 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +V ++ G + +I Sbjct: 190 KFAAATKSAVAAKETIAIYYDGELISVPSVNTEIKDGEAQISGSMTYEEADKLASTIRIG 249 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + + +VG ++ E I + I + I++ + L A LI+ Sbjct: 250 GLSLQLEELRSNVVGAQLGEEAISTSLKAGAIGLALVFIFMCFVY-LLPGLAASIALIIY 308 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 L F I L +A ++ IG +V+ V+++ R+++ + S R ++ Sbjct: 309 TGLILVLLNAFDITLTLPGIAGIILGIGMAVDANVIIFARVKEELTA---GKSVRSALNA 365 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ + + ++ I+ + + G + FA +A GIVV+ +++ I I+ Sbjct: 366 GFHKAMSAILDGNITTLIAAAVLWLKGSGTVKGFAQTLALGIVVSMFTALVITRLIVYSF 425 Query: 824 YDWRAKNARI 833 Y N ++ Sbjct: 426 YAVGIHNEKV 435 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 7/118 (5%) Query: 1 MRNNPWLVILYSMICCIGLL-IALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + ++ L + I LL ++ I LGLDL GG + + Sbjct: 1 MKKSKGVISLILTVALIALLGFTTVVGFGKTGSGA------AKNIKLGLDLEGGVSITYQ 54 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 V + + +L+ +++ ++ +++I++ + I D++ Sbjct: 55 VKGEKPSQSDMDDTIYKLQRRVEQYSTEATVYQEGEDRISIEIPGVKDANKILDELGQ 112 >gi|126654008|ref|ZP_01725841.1| preprotein translocase subunits D and F [Bacillus sp. B14905] gi|126589482|gb|EAZ83626.1| preprotein translocase subunits D and F [Bacillus sp. B14905] Length = 755 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 190/696 (27%), Positives = 333/696 (47%), Gaps = 27/696 (3%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 ++ + + + +R++ +G+SE +IQ +RI +QL G +D R+LL T+A Sbjct: 53 EGQKITPEIVTATSTALGERVNTMGVSEPSIQVEDKNRIRVQLAGVEDQESARKLLSTSA 112 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 ++F V N G +DS Q + + F T K Sbjct: 113 NLTFRDVDDNLLLDGDDLKANGAKDSFDQQNRPIVSLTL------KDAKKFADITSKIAA 166 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 + + + K + R +A ++Q + + ISGNF+++ Sbjct: 167 KPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTLNTTDVMISGNFSVDETKN 226 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LA +L AG+LP+KL+ + +VGA G ++ A + G+V+I +FM+ Y G ++ Sbjct: 227 LADILNAGALPVKLDEIYSTSVGAQFGDAALKSTIFAGIVGVVIIFIFMLFYYRLPGFIS 286 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 ++ + L L + + A LTLP IA IVLGIG+AVD+NIL ERIREE R S Sbjct: 287 IITLTVFTFLVLVVFDWINAVLTLPGIAAIVLGIGMAVDANILAAERIREELRVGYSAKQ 346 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 + +G ++ S I D+ +T L+A VLF +G +V+GFA T+ +SIL+S TA+ R + Sbjct: 347 AFQIGSKQSLSAIVDAQLTTLLAAAVLFQWGTSSVKGFATTLIISILLSFLTAVWGSRVL 406 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAI------------QFMRARFWGVGISILFSI 558 + ++ + + +++ I F+ R S+ + Sbjct: 407 LGLLVNSGYINNPAWFGIAKSKQHSLDENIGTLDLSTKFDRFDFVHNRKKFYTFSLAILV 466 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + ++ LN GIDF G ++ + +++ + V L+S+ + N Sbjct: 467 AGLVVIGIFRLNLGIDFSSGTRVQIESDQTLTKEEVSKYLDSIDFSSEDIILSGEKSNTA 526 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V E++K K V P + +EL++ I + I+A+ Sbjct: 527 VIRYKDDLSQA------EILKFKKEAGEKYGHEPAVSTVSPTVGKELVKNAIKALAIAAL 580 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF+W +GAI +L+ D+ + F+ +E ++T +AAVLT++GYS+ND + Sbjct: 581 GIIIYVAIRFEWRMGIGAIVSLLHDVFLIVAVFSFMRLEVDITFIAAVLTIVGYSINDTI 640 Query: 739 VVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DRMR+N+ Y T ++++KS+ +T+GRSV T + I V+ + ++G I Sbjct: 641 VTFDRMRENLDRYDTINDREVLANIVNKSLRQTMGRSVNTVLTVIIVVIALLIFGAPSIQ 700 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +F+I + G++ SSI IAA I + K + Sbjct: 701 NFSIALLIGLITGMYSSICIAAQIWYSLKIREMKKS 736 Score = 74.7 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 88/743 (11%), Positives = 198/743 (26%), Gaps = 58/743 (7%) Query: 1 MR-NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + + L ++ + + N + + I LGLDL+GG ++ E Sbjct: 1 MKLKSRIVAFLLILVLLVAGISTTVNGVLKD-------------IKLGLDLQGGFEVLYE 47 Query: 60 V----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADK 114 V + + S L + G+ S++ N+I + A +E+ Sbjct: 48 VNELKEGQKITPEIVTATSTALGERVNTMGVSEPSIQVEDKNRIRVQLAGVEDQESARKL 107 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 ++ ++ + + +++ DQ + +++ ++ D Sbjct: 108 LSTSANLTFRDVDDNLLLDGDDLKANGA------KDSFDQQNRPIVSLTLKDAKKFADIT 161 Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234 + + + D + S V + M F Sbjct: 162 SKIAAKPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTLNTTDVMISGNFSV 221 Query: 235 DSDGNQYLVEDKVEI-----------SGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283 D N + + + G A V I F M Sbjct: 222 DETKNLADILNAGALPVKLDEIYSTSVGAQFGDAALKSTIFAGIVGVVIIFIFMLFYYRL 281 Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343 I + L V +P A + G A ILAA L + Sbjct: 282 PGFISIITLTVFTFLVLVVFDWINAVLTLPGIAAIVLGIGMAVDANILAAERIREELRVG 341 Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL--- 400 + + +G+ +I + ++ + + SI L+ + Sbjct: 342 YSAKQAFQIGSKQSLSAIVDAQLTTLLAAAVLFQWGTSSVKGFATTLIISILLSFLTAVW 401 Query: 401 ---TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457 L L + + P+ GI ++D NI + + +R + F Sbjct: 402 GSRVLLGLLVNSGYINNPAWFGIAKSKQHSLDENIGTLDLSTKFDRFDFVHN---RKKFY 458 Query: 458 RAYSTIFDSNITAL----IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513 I + + + + + F G T+ + +I +I Sbjct: 459 TFSLAILVAGLVVIGIFRLNLGIDFSSGTRVQIESDQTLTKEEVSKYLDSIDFSSEDIIL 518 Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 I I + ++ ++ + Sbjct: 519 SGEKSNTAVIRYKDDLSQAEILKFKKEAGEKYGHEPAVSTVSPTVGKELVKNAIKALAIA 578 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 I + + + + + S L + + F E + + Sbjct: 579 ALGIIIYVAIRFEWRMGIGAIVSLLHDVFLIVAVFSFMRLEVDITFIAAVLTIVGYSIND 638 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR------ 687 + + + TI + E++ +++ L + V +++ I + Sbjct: 639 TIVTFDRMRENLDRYDTINDREVLANIVNKSLRQTMGRSVNTVLTVIIVVIALLIFGAPS 698 Query: 688 ---FKWYFALGAITTLILDITKT 707 F +G IT + I Sbjct: 699 IQNFSIALLIGLITGMYSSICIA 721 >gi|239637558|ref|ZP_04678530.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus warneri L37603] gi|239596776|gb|EEQ79301.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus warneri L37603] Length = 759 Score = 303 bits (775), Expect = 9e-80, Method: Composition-based stats. Identities = 168/696 (24%), Positives = 320/696 (45%), Gaps = 26/696 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ +A++ + + + R++ +G+SE IQ +RI +QL G +D R++L + A Sbjct: 54 GDKIDKNALQSTAQTLENRVNVLGVSEPKIQVEDPNRIRVQLAGVKDQKEARKILSSQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ G + + + V Sbjct: 114 LTIRDADDKVKLSGADIKQGSAKQEFKQNTNDPTVTFKVKDKNKFKKVTEEISKKQNNVM 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + ++ IN G ++ A + Sbjct: 174 VVWLDFKKGDSYKKEA----DKKDPKFVSAANVDQPINSDSVEISGGFHGQEGVKKAKQI 229 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AGSLP+ L + +VGA+ G D++ K A V G+ +I LFM+ Y GLVA Sbjct: 230 AELLNAGSLPVDLKEIYSNSVGAEFGQDALDKTIFASVLGVAVIYLFMLGFYRLPGLVAI 289 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ + Sbjct: 290 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 349 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R ++ Sbjct: 350 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRLLL 409 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ K + D F++ + +SIL + Sbjct: 410 SLLVYSNLFKKKYWLFGVKKADRHDISEGKDVHDLKTSFEKWNFVKLAKPLISLSILIVV 469 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + +L+ LN GIDF G ++ + + + S V ++ + + Q Sbjct: 470 VGLVILYIFKLNLGIDFSAGTRVDLQSKEALTQSKVEKVVKDVGLDPDQIQINGSGNKNA 529 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 Q ++ + +K + V P I +EL + ++ ++ +A+ Sbjct: 530 TVQFKQDLSQAKDNQLSDKMKSEFGNA------PQINTVSPLIGQELAKNAMLALVYAAV 583 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ +RF+W L ++ L+ D+ + F+L +E +LT +AA+LT++GYS+ND + Sbjct: 584 GIIIYVSLRFEWRMGLSSVLALLHDVFIIVAVFSLLRLEVDLTFIAAILTIVGYSINDTI 643 Query: 739 VVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R+N+ ++ D++++SI +T+ RS+ T + + V+ + ++G I Sbjct: 644 VTFDRVRENLHKIKVITSAEQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILLFGAPTIF 703 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +F++ + G++ SSIFIA P+ + + K + Sbjct: 704 NFSLALLIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739 >gi|229828663|ref|ZP_04454732.1| hypothetical protein GCWU000342_00729 [Shuttleworthia satelles DSM 14600] gi|229793257|gb|EEP29371.1| hypothetical protein GCWU000342_00729 [Shuttleworthia satelles DSM 14600] Length = 783 Score = 303 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 194/698 (27%), Positives = 345/698 (49%), Gaps = 23/698 (3%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 + Q+ + I + +E+ + ++G +RI +++PG +D + + LGT Sbjct: 64 SSQQMKDTIAKLQSRIENDLGEGQTTTEANVYQVGDNRITVEIPGVKDANAMLAQLGTPG 123 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDS---DGNQYLVEDKVEISGIHLNGATANFDPKT-- 265 K+ F K ++ + + + Q + + ++G + + A ++ + Sbjct: 124 KLYFIKQTGSDGSANYQVSQQTGQYELTKSIEQLQSDGSIVLTGSDVTSSKAGYETQQTG 183 Query: 266 -HKPVVDISFDEMGARRFFEVT--RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 KPVV IS +E G R F + T G+ + + DG+ ++ P ++ AI G A I+G Sbjct: 184 AQKPVVQISLNENGTRAFADATTQAKAKGQSIGIYYDGKFVSVPRVDAAITDGSAVINGM 243 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 + E A LA +R G L I+L ++ VGA LGS+++ A GL ++++FMI L Sbjct: 244 SSYEEADKLATYIRIGGLDIELEELQSEVVGAQLGSNAVSTALLAAGVGLAIVMVFMIAL 303 Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 Y GL A ++ L ++T+A+L TLTLP +AG++L +G+AVD+N ++ RIREE Sbjct: 304 YLLPGLAAAIALALYTVMTVAILYAFNVTLTLPGVAGVILSLGMAVDANAIIFARIREEI 363 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 +V ++ GF +A I D N+T LIA VL G G V+GFAIT+ + +++SMFT Sbjct: 364 SAGANVRNAVAAGFHKALGAIIDGNVTTLIAAAVLGLLGSGTVKGFAITLAIGVVLSMFT 423 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 A+ I R ++ + + + + I F+ R+ +GIS+ + Sbjct: 424 ALLITRLIISIFMA------LGARDPKAYGKSREWPKINFIGRRWLFIGISLAVICAGVI 477 Query: 563 LLFTHGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 L H L NY ++F GG V ++ +L +S + + + + Sbjct: 478 GLGFHQLSAGKALNYSLEFSGGTSTTVSFDQAYNLQEAQSQIVPVFESVTGDHDVQVQTV 537 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 + ++ + + + + ++E + I E+ R ++ VI++ Sbjct: 538 QNSKQIIFKTRTLNLEERKSLNEALNQKFGVAESEISSENISSTIGGEMRRAALIAVIVA 597 Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 MLIYIW+RF+ + FA AI L+ D+ L +A+F + +A +LT++GYSVN Sbjct: 598 VFFMLIYIWLRFRDFRFASSAIIALVHDVLIVLTMYAIFRMSVGSAFIACILTVVGYSVN 657 Query: 736 DKVVVYDRMRKNMKLY--TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 D +V++DR R N+K T++ + ++ ++ + ETLGRS+ TS + VL + + G S Sbjct: 658 DTIVIFDRHRDNLKTLTDTSNEALAEMANEGVRETLGRSLSTSFTTAVMVLMLLILGTST 717 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + FA P+ G++ SSIFIA P+ + + Sbjct: 718 MREFAFPLLVGVISGTYSSIFIATPLWYMMRSHSKIKS 755 Score = 114 bits (283), Expect = 9e-23, Method: Composition-based stats. Identities = 32/248 (12%), Positives = 90/248 (36%), Gaps = 4/248 (1%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + + + + G S + +I Sbjct: 201 FADATTQAKAKGQSIGIYYDGKFVSVPRVDAAITDGSAVINGMSSYEEADKLATYIRIGG 260 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 + +E+VG ++ + ++ + +++++ + AI + + Sbjct: 261 LDIELEELQSEVVGAQLGSNAVSTALLAAGVGLAIVMVFMIALYLLPGLAAAIALALYTV 320 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 T+ F + L VA V+ +G +V+ +++ R+R+ + + R+ + Sbjct: 321 -MTVAILYAFNVTLTLPGVAGVILSLGMAVDANAIIFARIREEISA---GANVRNAVAAG 376 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 ++ LG + ++ I+ + + G + FAI +A G+V++ +++ I I+ Sbjct: 377 FHKALGAIIDGNVTTLIAAAVLGLLGSGTVKGFAITLAIGVVLSMFTALLITRLIISIFM 436 Query: 825 DWRAKNAR 832 A++ + Sbjct: 437 ALGARDPK 444 Score = 54.7 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 40/397 (10%), Positives = 108/397 (27%), Gaps = 19/397 (4%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL-----KKEGIGVFSM-RQI 94 + LGLDL GG + + D + ++ +L+S + + + ++ + Sbjct: 39 SKGLKLGLDLAGGVSITYQAKGDTPSSQQMKDTIAKLQSRIENDLGEGQTTTEANVYQVG 98 Query: 95 QNKITLSFADSRFKENIADKVTLFLQGVN-SKLNVDPKKNLLVTTTEKEISIVLSQN--- 150 N+IT+ + + ++ + + D N V+ + + S Sbjct: 99 DNRITVEIPGVKDANAMLAQLGTPGKLYFIKQTGSDGSANYQVSQQTGQYELTKSIEQLQ 158 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR------Q 204 + ++ + + Q G + +Q + ++ + Sbjct: 159 SDGSIVLTGSDVTSSKAGYETQQTGAQKPVVQISLNENGTRAFADATTQAKAKGQSIGIY 218 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 G + + + Y+ ++I L Sbjct: 219 YDGKFVSVPRVDAAITDGSAVINGMSSYEEADKLATYIRIGGLDIELEELQSEVVGAQLG 278 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 ++ + +G P L + + + ++ Sbjct: 279 SNAVSTALLAAGVGLAIVMVFMIALYLLPGLAAAIALALYTVMTVAILYAFNVTLTLPGV 338 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG---LVLIVLFMIV 381 L + A ++ E + + + ++ ++ Sbjct: 339 AGVILSLGMAVDANAIIFARIREEISAGANVRNAVAAGFHKALGAIIDGNVTTLIAAAVL 398 Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 G V F+I L + + L++ + L T + SI Sbjct: 399 GLLGSGTVKGFAITLAIGVVLSMFTALLITRLIISIF 435 >gi|16081162|ref|NP_390643.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis subsp. subtilis str. 168] gi|221310703|ref|ZP_03592550.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis subsp. subtilis str. 168] gi|221315027|ref|ZP_03596832.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319948|ref|ZP_03601242.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis subsp. subtilis str. JH642] gi|221324229|ref|ZP_03605523.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus subtilis subsp. subtilis str. SMY] gi|81342122|sp|O32047|SECDF_BACSU RecName: Full=Protein-export membrane protein secDF gi|3220156|gb|AAC31122.1| SecDF protein [Bacillus subtilis subsp. subtilis str. 168] gi|32468805|emb|CAB14724.2| protein-export membrane protein [Bacillus subtilis subsp. subtilis str. 168] Length = 737 Score = 303 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 197/694 (28%), Positives = 339/694 (48%), Gaps = 28/694 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++E + +R + +G+SE IQ G++RI +QL G + +R R++L T A+ Sbjct: 53 GDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILATEAQ 112 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 +SF G + + Y I I L A + V Sbjct: 113 LSFRDANDKELLN----GADLVENGAKQTYDSTTNEPIVTIKLKDADKFGEVTKK---VM 165 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + + K + ++AP ++Q + + +I G+FT + A L Sbjct: 166 KMAPNNQLVIWLDYDKGDSFKKEVQKEHPKFVSAPNVSQELNTTDVKIEGHFTAQEAKDL 225 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A++L AG+LP+KL +VGA G +++ A + G+ +I LFM+ Y GL+A Sbjct: 226 ASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAV 285 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + + +TL + + A LTLP IA ++LG+G+AVD+NI+ ERI+EE + +SV + Sbjct: 286 ITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+++TIFD+NIT +IA VVLF FG +V+GFA + LSIL S TA+ + R ++ Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405 Query: 512 IFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILFSI 558 ++ + + I F R + S ++ Sbjct: 406 ALLVESRWLDRKKGWFGVNKKHIMDIQDTDENTEPHTPFQKWDFTSKRKYFFIFSSAVTV 465 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I +L LN GIDF G ++ V ++ + V + ESL + + + N Sbjct: 466 AGIIILLVFRLNLGIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTVVLSGEKSNIG 525 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V D +V K K N V P + +EL R + V I++I Sbjct: 526 VARFVGVPDKETIAKVKTYFKDKYGSD------PNVSTVSPTVGKELARNALYAVAIASI 579 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF++ A+ AI +L+ D + FF++ +E ++T +AA+LT+IGYS+ND + Sbjct: 580 GIIIYVSIRFEYKMAIAAIASLLYDAFFIVTFFSITRLEVDVTFIAAILTIIGYSINDTI 639 Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R++MK +++ S+ +T RS+ T + I V+ + ++G S I + Sbjct: 640 VTFDRVREHMKKRKPKTFADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFGASSITN 699 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F+I + G++ SS++IAA I L K Sbjct: 700 FSIALLVGLLTGVYSSLYIAAQIWLAWKGRELKK 733 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 88/219 (40%), Gaps = 4/219 (1%) Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 + G AQ + T + + VG + ++ + + Sbjct: 203 SQELNTTDVKIEGHFTAQEAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAG 262 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 I+ + +++ ++ L A+ TL + I TL F L +AA++ +G + Sbjct: 263 IVGIAIIFLFMLFYYRLP-GLIAVITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMA 321 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 V+ ++ Y+R+++ +KL S R + ++ I+ + + ++G S Sbjct: 322 VDANIITYERIKEELKL---GKSVRSAFRSGNRRSFATIFDANITTIIAAVVLFIFGTSS 378 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + FA + I+ + +++F++ +L + + R + + Sbjct: 379 VKGFATMLILSILTSFITAVFLSRFLLALLVESRWLDRK 417 Score = 63.9 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 52/419 (12%), Positives = 115/419 (27%), Gaps = 22/419 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + + + IG + N I+LGLDL+GG ++ +V Sbjct: 1 MKKGRL-IAFFLFVLLIGTGLGYFTKPA------------ANNITLGLDLQGGFEVLYDV 47 Query: 61 DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115 D L + L G+ +++ + N+I + A + + + Sbjct: 48 QPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107 Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISI--VLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 Q N N + I + ++ E+ ++ + Sbjct: 108 ATEAQLSFRDANDKELLNGADLVENGAKQTYDSTTNEPIVTIKLKDADKFGEVTKKVMKM 167 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 ++ I + +++ + + +++ V Sbjct: 168 APNNQLVIWLDYDKGDSFKKEVQKEHPKFVSAPNVSQELNTTDVKIEGHFTAQEAKDLAS 227 Query: 234 RDSDGN--QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + G L E G + + I F M I Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAVIT 287 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + + + ++ +P A I G A I+ L + ++ Sbjct: 288 LSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 G +I+ + V++ +F + + SI + I + L L A Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLA 406 >gi|282890157|ref|ZP_06298687.1| hypothetical protein pah_c014o001 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499814|gb|EFB42103.1| hypothetical protein pah_c014o001 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 1473 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 197/842 (23%), Positives = 358/842 (42%), Gaps = 64/842 (7%) Query: 42 NRISLGLDLRGGSHLVLEV----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 + GLDL GG + + + + L+ ++EL + + K G+ ++R N Sbjct: 626 KILKWGLDLSGGKTVRIGLRDHNNRPVTNPEDLKQATNELYTRINKMGVSERTIRVENNN 685 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 I L F S+ + ++ V + N + + + + Sbjct: 686 IILDFPGSQAL-SASELVQASAMYFHIVNEKFTPNNPTLKDSVNQFLQGVWNEAAVTNRK 744 Query: 158 HAIEQSMEIIRQRI-DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + R D + + +++P D + T + ++ + Sbjct: 745 DVQGVNEIAWRHLGGDDQQTYPRSEAARVLYDNGLRIPSPDDATTGNAFNDTLSAVAIMR 804 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 + +G + + + + V++ G NF K + + Sbjct: 805 GDDYSEWEGQSTPLLIVFRNYALEGSSLTNVQVGYDPTQGNILNFAVKGSYDGNKVVGNP 864 Query: 277 MGARRFFEVTRD-------------NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 + + V+ + + + +A A ISG F Sbjct: 865 RDNFYAWTSQFAEDKILGTPKENYSHGRGWRMAVILNQKVISQPALRAALRDGATISGRF 924 Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383 + LAA L+AGSL +I+ E+NV A+LG+ +G A + L L+V+ MI Y Sbjct: 925 SQREINQLAADLKAGSLSFTPHILSEQNVSAELGTQERARGIGASLVALALVVIAMISYY 984 Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 GLVA ++ LN+++ +L L A LTLP IAGIVL IG+AVD+N+LV ER+REE + Sbjct: 985 RFAGLVASCAVLLNILIMWGVLQNLDAALTLPGIAGIVLTIGMAVDANVLVFERVREEFK 1044 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + + ++ G+ +A+S I DSN+T +IA +VL F G ++GFA+T+ + IL SMFTA Sbjct: 1045 ISGRIASAIQAGYRKAFSAIVDSNVTTIIAALVLIQFDSGPIKGFAVTLIIGILSSMFTA 1104 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS-ICSIC 562 + + R ++ KS+ + F+ IS + + S Sbjct: 1105 LFMTRYFFAGWVKNPNNKSLTMCEFIGK------THFDFIGQAKKAFIISAIVMLVGSYL 1158 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES------LQIGDISFQNFDGEKN 616 + +G+DF GG L V + R ++ + D+ Q Sbjct: 1159 FISQKNTIFGMDFTGGYSLNVEVQEQAEHPSYRQDVMNSLLAAGASTTDVQVQELSKPNQ 1218 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN----------------------- 653 +++ + L V + Sbjct: 1219 LRIQMGMGMEEKGHPFYQLPEVSNVEGAPYEYQSNPRIVWLVNALQENGVQIPKDQLESL 1278 Query: 654 ---TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ ++S + ++G+ I+ +L YI +RF++ +A+GA+ L D+ TLG Sbjct: 1279 NRNWTVMSGQLSEAMRDNALIGLAIALACILAYITLRFEFKYAIGAVIALAHDVIITLGI 1338 Query: 711 FALFG-----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 ALF ++ +L V A++T+IGYS+ND ++V+DR+R+++K+Y +SF ++++ SI Sbjct: 1339 IALFHKLGFPVQIDLEVVGAIMTIIGYSLNDTIIVFDRIREDVKVYRK-MSFSEILNHSI 1397 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 N TL R++ TS + +L + + GG I F++ M G+VV SS+FIA P++L+ ++ Sbjct: 1398 NVTLSRTIMTSGTTLLVLLALVLLGGPSIFGFSLVMTVGVVVGTLSSLFIAGPVMLYFHN 1457 Query: 826 WR 827 Sbjct: 1458 RE 1459 >gi|299535659|ref|ZP_07048980.1| bifunctional preprotein translocase subunit SecD/SecF [Lysinibacillus fusiformis ZC1] gi|298728859|gb|EFI69413.1| bifunctional preprotein translocase subunit SecD/SecF [Lysinibacillus fusiformis ZC1] Length = 755 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 194/695 (27%), Positives = 331/695 (47%), Gaps = 27/695 (3%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 ++ + + + +R++ +G+SE +IQ +RI +QL G +D R+LL T+A Sbjct: 53 EGQKITPEIVTATSTALGERVNTMGVSEPSIQVEDKNRIRVQLAGVEDQESARKLLSTSA 112 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 ++F V N G +DS Q + + F T K Sbjct: 113 NLTFRDVDDNLLLDGDDLKANGAKDSFDQQNRPIVSLTL------KDAKKFADITSKIAA 166 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 + + + K + R +A ++Q + + ISGNFT+E Sbjct: 167 KPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTLNTTDVMISGNFTVEETKN 226 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LA +L AG+LP+KL+ + +VGA G ++ A + G+V+I LFM+ Y G ++ Sbjct: 227 LADILNAGALPVKLDEIYSTSVGAQFGDAALKSTIFAGIVGVVVIFLFMLFYYRLPGFIS 286 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 ++ + L L + + A LTLP IA IVLGIG+AVD+NIL ERIREE R SV Sbjct: 287 IITLAVFTFLVLVVFDWINAVLTLPGIAAIVLGIGMAVDANILAAERIREELRVGYSVKQ 346 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 + +G ++ S I D+ +T L+A VLF +G +V+GFA T+ +SIL+S TA+ R + Sbjct: 347 AFQIGSKQSLSAIIDAQLTTLLAAAVLFQWGTSSVKGFATTLIISILLSFLTAVWGSRVL 406 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAI------------QFMRARFWGVGISILFSI 558 + ++ S +++ I F+ R S+ + Sbjct: 407 LGLLVNSGYFNSPAWFGIAKSKQHSLDENIGTLDLSTKFDRFDFVHNRKKFYTFSLAILV 466 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + +L LN GIDF G ++ + +++ + V L+S+ + N Sbjct: 467 AGLVVLGIFRLNLGIDFSSGTRVQIESDQTLTKEEVSKYLDSIDFSSEDIILSGEKSNTA 526 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V + + +K V P + +EL++ I + ++AI Sbjct: 527 VIRYKDDLTQAEIIEIKKEAGEKYG------HEPAVSTVSPTVGKELVKNAIKALSLAAI 580 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF+W +GAI +L+ D+ + F+ +E ++T +AAVLT++GYS+ND + Sbjct: 581 GIIIYVAIRFEWRMGIGAIVSLLHDVFLIVAVFSFMRLEVDITFIAAVLTIVGYSINDTI 640 Query: 739 VVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DRMR+N+ Y T ++++KS+ +T+GRSV T + I V+ + ++G I Sbjct: 641 VTFDRMRENLNRYDTINDREVLANIVNKSLRQTMGRSVNTVLTVIIVVVALLIFGAPSIQ 700 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 +F+I + G++ SSI IAA I + K Sbjct: 701 NFSIALLIGLITGMYSSICIAAQIWYSLKIREMKK 735 Score = 65.5 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 20/231 (8%) Query: 1 MR-NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + + L ++ + N + + I LGLDL+GG ++ E Sbjct: 1 MKLKSRIVAFLLIIVLLAAGISTTVNGVLKD-------------IKLGLDLQGGFEVLYE 47 Query: 60 V----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADK 114 V + + S L + G+ S++ N+I + A +E+ Sbjct: 48 VNELKEGQKITPEIVTATSTALGERVNTMGVSEPSIQVEDKNRIRVQLAGVEDQESARKL 107 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 ++ + D Q N V + Sbjct: 108 LSTSANLTFRDV-DDNLLLDGDDLKANGAKDSFDQQNRPIVSLTLKDAKKFADITSKIAA 166 Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225 + + + + + + + + A +S + G Sbjct: 167 KPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTLNTTDVMISG 217 >gi|154686906|ref|YP_001422067.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus amyloliquefaciens FZB42] gi|154352757|gb|ABS74836.1| SecDF [Bacillus amyloliquefaciens FZB42] Length = 739 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 191/696 (27%), Positives = 336/696 (48%), Gaps = 28/696 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + +++ + +R + +G+SE IQ G++RI +QL G + +R R++L T A+ Sbjct: 53 GDKITKDVLVSTVQALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILSTEAQ 112 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 +SF G + + + I + L A + V Sbjct: 113 LSFRDTNDKELLN----GSDLVENGAKQTFDPTTNEPIVSVKLKDADKFGEVTKK---VK 165 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + + K + ++AP ++Q + + I G FT++ A L Sbjct: 166 KMAPNNQLVIWLDYQKGDSFKKEVGKKHPKYVSAPNVSQELNTKDVTIEGQFTVQKAKDL 225 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AG+LP+KL +VGA G +++ A + G+ ++ LFM++ Y GL+A Sbjct: 226 ANILNAGALPVKLTEKYSTSVGAQFGQQALHDTVEAGIIGIAIVFLFMLLYYRLPGLIAV 285 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + V +TL + + A LTLP IA ++LG+G+AVD+NI+ ERI+EE + +SV + Sbjct: 286 ITLSVYVYITLQVFDWMQAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+++TIFD+NIT +IA VVLF FG +V+GFA + LSIL S TA+ + R ++ Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ + + + I D F R + S +I Sbjct: 406 ALLVESRWLDRKKSWFGVKKKHIMDIQKTDENTEPHTAFQKWDFTSKRKYFFIFSSAVTI 465 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I +L LN GIDF G ++ V +N + V + +SL + + E + Sbjct: 466 AGIIILLVFKLNLGIDFASGARIDVQSNHSLTAHQVEKDFDSLGMEPENIVLSGKENHVA 525 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + K K N V P + +EL R + V I++I Sbjct: 526 AARFVGEPSKEKIAEIKTYFKDKYGSE------PNVSTVSPTVGKELARNALYAVAIASI 579 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF++ A+ AI +L+ D + FF++ +E ++T +AA+LT+IGYS+ND + Sbjct: 580 GIIIYVSIRFEYRMAVAAIVSLLYDAFFIIAFFSITRLEVDVTFIAAILTIIGYSINDTI 639 Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R+ MK +++ S+ +T RS+ T + I V+ + + G S I + Sbjct: 640 VTFDRIREQMKKRKPKSFADLEYIVNLSLQQTFTRSINTVLTVVIVVVVLLILGSSSITN 699 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 F++ + G++ SS++IAA + L K + Sbjct: 700 FSVALLVGLLTGVYSSLYIAAQLWLVWKGKEFKGKK 735 Score = 64.3 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 53/419 (12%), Positives = 117/419 (27%), Gaps = 22/419 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ L + + L+ + + N I+LGLDLRGG ++ +V Sbjct: 1 MKKGR----LIAFFLIVLLIGTGLGYFTKPAA---------NNITLGLDLRGGFEVLYDV 47 Query: 61 DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115 D L L G+ +++ + N+I + A + + + Sbjct: 48 QPVKKGDKITKDVLVSTVQALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107 Query: 116 TLFLQGVNSKLNVD---PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172 + Q N +L+ ++ ++ + + A + + + Sbjct: 108 STEAQLSFRDTNDKELLNGSDLVENGAKQTFDPTTNEPIVSVKLKDADKFGEVTKKVKKM 167 Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232 + G++ P + + + + + Sbjct: 168 APNNQLVIWLDYQKGDSFKKEVGKKHPKYVSAPNVSQELNTKDVTIEGQFTVQKAKDLAN 227 Query: 233 LRDSDGNQY-LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + ++ L E G + + + I F M I Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHDTVEAGIIGIAIVFLFMLLYYRLPGLIAVIT 287 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + V + +V +P A I G A I+ L + ++ Sbjct: 288 LSVYVYITLQVFDWMQAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 G +I+ + V++ +F + + SI + I + L L A Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLA 406 >gi|251778537|ref|ZP_04821457.1| protein export protein SecD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082852|gb|EES48742.1| protein export protein SecD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 720 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 181/628 (28%), Positives = 334/628 (53%), Gaps = 11/628 (1%) Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 + + + TT +V + + + E + ++G + A+A Sbjct: 85 VAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSGNLVFKSPEGEEILTGKDVKKASAVL 144 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 + + PVV + ++ G + F E T +G+ ++V +D +LT+P + I G A I+G Sbjct: 145 NQQDGNPVVSLELNDDGQKAFAEATGKYVGQKISVYMDDELLTSPTVQTQITDGSAIITG 204 Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381 + ++E A LA ++ +G+LP+ + V +NVGA LG+ ++ A G+ L+ LFMI+ Sbjct: 205 STSLEDAKKLAGIINSGALPVTVKAVSVQNVGAQLGATALPNALKAGAIGIGLVFLFMIL 264 Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 Y GL+A ++ L + +TL + + +G TLTLP IA ++L IG+AVD+N+L+ ERIREE Sbjct: 265 YYRVPGLLASIALTLYIAITLLIFTEIGVTLTLPGIAALLLTIGMAVDANVLIFERIREE 324 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 ++ SV S+ GF A S+I DSN+T ++A ++L+F G G V+GFA+T+ + I++S+F Sbjct: 325 LKRGISVKTSVKKGFENALSSIVDSNVTTILAGLILYFLGSGTVKGFAVTLMIGIVVSLF 384 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR---ARFWGVGISILFSI 558 T++ + + ++ + +K + + ++++ + IS++ + Sbjct: 385 TSLVVTKLLVNLSVDIGLLKKLSNFGVKNTEDDIKTGERKYLKIIEKSKIWLSISLIVIL 444 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 LFT GLN+GIDFKGG QL + VD V + +++ ++ + + Sbjct: 445 LGCGFLFTKGLNFGIDFKGGTQLTIQLKDGVDKQEVDNIIKTYASDAVTNTINNNQYEVK 504 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 S T + E + + +G I +EL + ++ + ++ I Sbjct: 505 SGDLNSEKVSSIMTELKEKYDLDENAL------LAQDEIGASIGKELTQNSLIALFVACI 558 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ML YI +RF+ F + A+ + D+ T+ +A+FGI N +AA+LT+IGYS+ND + Sbjct: 559 VMLAYIGVRFELKFGIAALVATLHDVLITVSVYAIFGISVNTPFIAAILTIIGYSMNDTI 618 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 V++DR+R+N K + ++ + S+ ET+ RS+ T+M +++ + ++ + F Sbjct: 619 VIFDRIRENSKSM-RRANPVEVANVSLTETMTRSINTTMTTLFTIVAVNIF-VPTVREFT 676 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDW 826 IP+ GIV A SSIF+A+P +++ + Sbjct: 677 IPLIIGIVAGAYSSIFVASPTWVYLKNR 704 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 2/144 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ L+++I + L +A + ++ + + I GLDL+GG +++E+ Sbjct: 1 MKKKGKSSALFTVIVLVTLFLAF-SGFKGFVVGGWEFKSFNDVIKKGLDLQGGVSVLMEI 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119 ED L+ + + + K G+ + +I + + + I D ++ Sbjct: 60 QEDKVTQDQLESTKEHISLRVNKMGVAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSG 119 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEI 143 V + + Sbjct: 120 NLVFKSPEGEEILTGKDVKKASAV 143 >gi|271969992|ref|YP_003344188.1| bifunctional preprotein translocase subunit SecD/SecF [Streptosporangium roseum DSM 43021] gi|270513167|gb|ACZ91445.1| bifunctional preprotein translocase subunit SecD/SecF [Streptosporangium roseum DSM 43021] Length = 756 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 194/705 (27%), Positives = 347/705 (49%), Gaps = 27/705 (3%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +I + + + + A ++++E++R+R D +G++++ + R G RI+++LPG QDP Sbjct: 37 GTQIVLETRDSPTVKADAEATDRTLEVLRRRADALGVADAPLARSGERRIIVELPGLQDP 96 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-AT 258 ++ +++G TA+++FH V+ + + L+ ++G + Sbjct: 97 TKAAEVIGKTAQLTFHPVIALADATTKPKEGEQIIPDEDGVKLLVGPARLTGDGVEDAQA 156 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV-------------LDGRVLTA 305 + V + + G + + +T + P + +V Sbjct: 157 GTDPQQGSGWYVTVDLRDGGRKAWAGLTGEAACNPAGDPKRRVAIVLDSKVVVSPQVNEG 216 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 N +P QI+G+FT E AG LAA+++ GSLP+ + I+E+R VG LG+ +I Sbjct: 217 VACNVGLPGSSTQITGSFTAEEAGDLAALIKGGSLPVPVEIIEQRTVGPTLGAAAIASSA 276 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 A V G++L LF++V+Y G +A ++ +++ A L LGATLTLP +AG VL IG Sbjct: 277 QAAVIGVLLTALFIVVIYRLVGFLATIALACYALISYAALVALGATLTLPGLAGFVLAIG 336 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +AVD+N+LV ER REE + +L+ GF A+S + DSNIT L+A +LFF G V Sbjct: 337 MAVDANVLVFERAREEYAVGPRLRPALEKGFRNAWSAVADSNITTLLAAGLLFFLASGPV 396 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLIPDCIAIQ 541 RGF +T+ + ++ S+ TA+ I R + + + + + + R + Sbjct: 397 RGFGVTLSIGVIASLVTAMVITRVLAEWAVTRRPVARRPALTGLADIGRVRTWLNARKPG 456 Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601 MR R ++ + + ++ + G+N+G++F GG + + P+ R + Sbjct: 457 LMRHRTVYFVVTGVLVVVAVAGVAVRGVNFGVEFTGGRLVEYSTSVPITADAARELVGEA 516 Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661 + Q D + L ++ + T + E++GP + Sbjct: 517 GFPNAVVQASDAD--------ISVRTGQIGAADLARIEAALESGAGQITKERDELIGPSL 568 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721 EL R ++ + ++ A L+Y+ RF+W F L + L++D +G FA G + Sbjct: 569 GDELRRNALIALAVALAAQLVYLAFRFRWTFGLATVLALVVDSAIVVGAFAWLGKPVDGV 628 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 +AA+LT+IGYSVNDKVVV+DR+R+ + F ++ + +I +T+ R+V T + A Sbjct: 629 FLAAMLTVIGYSVNDKVVVFDRVRE-LWGMRPRTPFAEVAETAILQTVPRTVNTGLGALF 687 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + +AV GG + FA+ + GIVV SS +AAP+ + Sbjct: 688 ILAALAVLGGDSLTDFAVALLIGIVVGTLSSALVAAPLAIEFEKR 732 Score = 99.8 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 62/174 (35%), Gaps = 4/174 (2%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VGP + I +I + ++I + ++ A L + Sbjct: 260 QRTVGPTLGAAAIASSAQAAVIGVLLTALFIVVIYRLV-GFLATIALACYALISYAALVA 318 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G L +A + IG +V+ V+V++R R+ + R ++K Sbjct: 319 LGATLTLPGLAGFVLAIGMAVDANVLVFERAREEYAVGPR---LRPALEKGFRNAWSAVA 375 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 +++ ++ + + F + ++ G++ + +++ I + + R Sbjct: 376 DSNITTLLAAGLLFFLASGPVRGFGVTLSIGVIASLVTAMVITRVLAEWAVTRR 429 Score = 63.6 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 48/189 (25%), Gaps = 28/189 (14%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60 R + + + L IAL LGLDLRGG+ +VLE Sbjct: 3 RAPVVRAVTAFAVIALSLFIAL-----------------TMTPRLGLDLRGGTQIVLETR 45 Query: 61 DEDDF--VNGFLQMYSDELRSFLKKEGIGV-FSMRQIQNKITLSFADSRFKENIADKVTL 117 D + LR G+ R + +I + + A+ + Sbjct: 46 DSPTVKADAEATDRTLEVLRRRADALGVADAPLARSGERRIIVELPGLQDPTKAAEVIGK 105 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 Q + E+ I + + + + D + Sbjct: 106 TAQLTFHPVIALADATTKPKEGEQIIP-------DEDGVKLLVGPARLTGDGVEDAQAGT 158 Query: 178 ESTIQRLGS 186 + Sbjct: 159 DPQQGSGWY 167 >gi|291561978|emb|CBL40788.1| protein translocase subunit secF/protein translocase subunit secD [butyrate-producing bacterium SS3/4] Length = 746 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 179/628 (28%), Positives = 305/628 (48%), Gaps = 17/628 (2%) Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH----KPVVDI 272 V + Y V + G + A A V + Sbjct: 105 VDIPGVTDANKILEELGKPGSLQFYDENWNVVLEGTDVASAKAVIYKDQQTGNNNYEVAL 164 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 +F + G ++F +VT N+GK +A+V D + + P + QAI G+A ISG + E A LA Sbjct: 165 TFTDEGTKKFADVTAANVGKKIAIVYDNVMYSNPTVQQAITGGQASISGMTSYEEAENLA 224 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392 + +R GSL ++L + VGA LG ++I A G ++ +FMI +Y GL A Sbjct: 225 STIRIGSLSLELEELRSNVVGAKLGQEAITTSLKAGAIGFGIVCVFMIAVYLVPGLAASL 284 Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452 ++ L V L L LL+ TLTLP IAGI+L IG+AVD+N+++ RI+EE ++V ++ Sbjct: 285 ALCLYVALMLILLAAFEVTLTLPGIAGIILSIGMAVDANVIIFTRIKEEIGLGKTVHSAI 344 Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 GF++A S I D N+T LIA VL++ G G V+GFA T+ L I++SMFTA+ + + + Sbjct: 345 KTGFAKALSAIVDGNVTTLIAAAVLYWRGSGTVKGFATTLALGIVLSMFTALFVTKFTLN 404 Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG---- 568 + ++ + + + AI F+ R IS + + + + + Sbjct: 405 TLY------NLGFQDQKFYGIRKEKKAINFLGKRNICFIISAVMILAGVAGMVMNKSSIG 458 Query: 569 --LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 NY +DF+GG V N + L + S + + + + +K Sbjct: 459 NAFNYSLDFQGGTSTSVTFNEDMSLERISSEVVPVVESITNSADTQTQKVAGTNEVIIKT 518 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 +++ + + + + E + +S E+ R ++ I+ + ML+YIW+ Sbjct: 519 RTLSVEERQALDEALVENFGVDESKITAESISGAVSAEMKRDAVMATAIATVFMLLYIWV 578 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 RFK FA A+ L+ D+ + +AL TA+A +LT++GYS+N +V++DR+R Sbjct: 579 RFKDIRFAASAVLALVHDVLVVVACYALAKWSVGSTAIACLLTIVGYSINATIVIFDRIR 638 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 +N+ L S D+++ SI +T RS+ TS+ F+ V + + G S I FA+P+ GI Sbjct: 639 ENINLMGPKASTVDIVNTSITQTFTRSINTSLTTFVMVFVLFIMGVSSIREFALPLMAGI 698 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833 + SS+ + + + + K + Sbjct: 699 ICGTYSSVCLTGAMWYVMTTKKQKKDAV 726 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 1/182 (0%) Query: 16 CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD 75 G + + D I LGLDL GG + + E++ + Sbjct: 21 IFGFFGYDTLQKSKLVTDENGVTSQNGGIKLGLDLAGGVSITYQAKEENPSAEDMSDTQY 80 Query: 76 ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL 135 +L+ ++ ++ N+I + I +++ N + Sbjct: 81 KLQQRVQNYSSEAEVYQEGGNRINVDIPGVTDANKILEELGKPGSLQFYDENWNVVLEG- 139 Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195 + I Q + A+ + E ++ D + + ++ P Sbjct: 140 TDVASAKAVIYKDQQTGNNNYEVALTFTDEGTKKFADVTAANVGKKIAIVYDNVMYSNPT 199 Query: 196 EQ 197 Q Sbjct: 200 VQ 201 >gi|188587560|ref|YP_001920357.1| protein export protein SecD [Clostridium botulinum E3 str. Alaska E43] gi|188497841|gb|ACD50977.1| protein export protein SecD [Clostridium botulinum E3 str. Alaska E43] Length = 720 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 182/628 (28%), Positives = 334/628 (53%), Gaps = 11/628 (1%) Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 + + + TT +V + + + E + ++G + A+A Sbjct: 85 VAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSGNLVFKSPEGEEILTGKDVKKASAVL 144 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 + + PVV + ++ G + F E T +G+ ++V +D +LT+P + I G A I+G Sbjct: 145 NQQDGNPVVSLELNDDGQKAFAEATGKYVGQKISVYMDDELLTSPTVQTQITDGSAIITG 204 Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381 + ++E A LA ++ +G+LP+ + V +NVGA LG+ ++ A G+ L+ LFMI+ Sbjct: 205 STSLEDAKKLAGIINSGALPVTVKAVSVQNVGAQLGATALPNALKAGAIGIGLVFLFMIL 264 Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 Y GL+A ++ L + +TL + + +G TLTLP IA ++L IG+AVD+N+L+ ERIREE Sbjct: 265 YYRVPGLLASIALTLYIAITLLIFTEIGVTLTLPGIAALLLTIGMAVDANVLIFERIREE 324 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 ++ SV S+ GF A S+I DSN+T ++A ++L+F G G V+GFA+T+ + I++S+F Sbjct: 325 LKRGISVKTSVKKGFENALSSIVDSNVTTILAGLILYFLGSGTVKGFAVTLMIGIVVSLF 384 Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR---ARFWGVGISILFSI 558 T++ + + ++ + +K + + Q+++ + IS++ + Sbjct: 385 TSLVVTKLLVNLSVDIGLLKKLSNFGVKNTEDDIKTGERQYLKIIEKSKIWLSISLIVIL 444 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 LFT GLN+GIDFKGG QL + VD V + +++ ++ + + Sbjct: 445 LGCGFLFTKGLNFGIDFKGGTQLTIQLKDGVDKQEVDNIIKTYASDAVTNTINNNQYEVK 504 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 S T + E + + +G I +EL + ++ + ++ I Sbjct: 505 SGDLNSEKVSSIMTELKEKYDLDENAL------LAQDEIGASIGKELTQNSLIALFVACI 558 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ML YI +RF+ F + A+ + D+ T+ +A+FGI N +AA+LT+IGYS+ND + Sbjct: 559 VMLAYIGVRFELKFGIAALVATLHDVLITVSVYAIFGISVNTPFIAAILTIIGYSMNDTI 618 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 V++DR+R+N K + ++ + S+ ET+ RS+ T+M +++ + ++ + F Sbjct: 619 VIFDRIRENSKSM-RRANPVEVANVSLTETMTRSINTTMTTLFTIVAVNIF-VPTVREFT 676 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDW 826 IP+ GIV A SSIF+A+P +++ + Sbjct: 677 IPLIIGIVAGAYSSIFVASPTWVYLKNR 704 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 2/144 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ L+++I + L +A + ++ + + I GLDL+GG +++E+ Sbjct: 1 MKKKGKSSALFTVIVLVTLFLAF-SGFKGFVVGGWEFKSFNDVIKKGLDLQGGVSVLMEI 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119 ED L+ + + + K G+ + +I + + + I D ++ Sbjct: 60 QEDKVTQDQLESTKEHISLRVNKMGVAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSG 119 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEI 143 V + + Sbjct: 120 NLVFKSPEGEEILTGKDVKKASAV 143 >gi|89898635|ref|YP_515745.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila felis Fe/C-56] gi|89332007|dbj|BAE81600.1| protein export proteins SecD/SecF fusion [Chlamydophila felis Fe/C-56] Length = 1404 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 183/837 (21%), Positives = 341/837 (40%), Gaps = 55/837 (6%) Query: 41 KNRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96 + + LG+D GG + L + + SDEL + L K G+ +R+ + Sbjct: 576 DSVLRLGIDFIGGKQIRLAFKDHQGKPIADKEDILKVSDELYARLNKLGVAEVEIRREGD 635 Query: 97 KITLSFADSRFK--ENIADKVTLFLQGVNSKL-NVDPKKNLLVTTTEKEISIVLSQNNID 153 + LS S E I + VN K + + + SQ Sbjct: 636 NVYLSVPGSEKISSEEILGTSQMTFHVVNEKFSYYSALRYEVQRFLDYLWFTAQSQEATS 695 Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 + + + ++ + ++ + E L TT M Sbjct: 696 PEAINKLASYIFNNQEIRLPTSVRDAITKLQQEG----LAFPEVGSDAPSSHLDTTYSMI 751 Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273 K + M R + + + IS ++ + K Sbjct: 752 AIKKDREDKANPLMIVFRNYALDGASLKNIRPEFAISEGYILNFSVKDSTIAQKAHNVSP 811 Query: 274 FD----------EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 + + G + V+ + + + A A +SG F Sbjct: 812 TESFHAWTAAYCQEGINGTTNSQYSSGRGWRMAVVLDGYVVSDPVLNAPLKDHASVSGKF 871 Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383 + LA L++GS+ ++ E + +LG +G +I+ GL ++++ M V Y Sbjct: 872 SHREVNRLATDLKSGSMSFVPEVLIEEVISPELGKQQRTQGIISILLGLAVLIILMSVYY 931 Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 G++A ++ LN++L A L L A LTL +AGIVL +G+AVD+N+LV ERIREE Sbjct: 932 KFGGVIASGAVILNLLLIWAALQYLDAPLTLTGLAGIVLAMGMAVDANVLVFERIREEYV 991 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 ++S+ S++ G+ +A+ IFDSN+T ++A+++L G ++GFA+T+ + I SMFTA Sbjct: 992 LSRSLSQSVEAGYKKAFGAIFDSNLTTVLASLLLLILDTGPIKGFALTLIIGIFSSMFTA 1051 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + + + + K+ + I R W V S++ C Sbjct: 1052 LFMTKFFFMVWMN----KTQETQLHMMNKFIGIKHDFLRECKRLWMVSGSVISLGCVALG 1107 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRP--VDLSVVRSNLESLQIGD---------------I 606 G+DFKGG L + VD++ R L Sbjct: 1108 FGAWHSVLGMDFKGGYALTLNMAEQKSVDVTQFRHTLGDKFKQVGLSSRDFKITTFDSSE 1167 Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGP 659 + + + + + A L +V +++ + + V Sbjct: 1168 KIKIYFSQNALARVQAPEIKVTEAFDPHLSVVMGILSDTGIDISSDSFKDTQNFWFKVSS 1227 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG---- 715 + S ++ ++ + ++ + +L+Y+ +RF+W +A AI LI D+ T Sbjct: 1228 QFSNKMRKQAFIALMGALFIILLYVSLRFEWRYAFSAICALIHDLVATCAVLVATHFFLK 1287 Query: 716 -IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 I+ +L AV A++T++GYS+N+ ++++DR+R++ + + LI+ ++ +TLGR+V Sbjct: 1288 KIQIDLQAVGALMTVLGYSLNNTLIIFDRIREDRQEKLFT-PMPILINDALQKTLGRTVM 1346 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 T+ +L + GG I +FA M GI++ SS++IA P+LLF+ + Sbjct: 1347 TTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERQR 1403 >gi|15835348|ref|NP_297107.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia muridarum Nigg] gi|270285519|ref|ZP_06194913.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia muridarum Nigg] gi|270289530|ref|ZP_06195832.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia muridarum Weiss] gi|301336916|ref|ZP_07225118.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia muridarum MopnTet14] gi|7190762|gb|AAF39543.1| secDF protein, putative [Chlamydia muridarum Nigg] Length = 1400 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 182/834 (21%), Positives = 344/834 (41%), Gaps = 54/834 (6%) Query: 43 RISLGLDLRGGSHLVL-----EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 + G D GG + L + + + SDEL + L K G+ M++ + Sbjct: 574 VLRFGTDFVGGKQIRLAFRDHQGNLVT-DKEGIDKVSDELYARLNKLGVSEVGMQREGDH 632 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 I +S + + T + + L + + ++D+ Sbjct: 633 IQVSVPGAANLSSADILGTSKMSFHVVNEQFSSRSPLRYEVQTFLDYLWFTARSLDKSSP 692 Query: 158 HAI---------EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 I E I IG + + + S + G+ Sbjct: 693 KDINHLAATIFHENQGPIPANVRAAIGKLKEAGLNFSKEHEMGSACLDTQYSMIAVEKGS 752 Query: 209 TAKMSF-HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 +++ V N++ +G + G Y++ V+ + L+ Sbjct: 753 GEQVNPLMIVFRNHALEGASLKNIRPEFAVGEGYVLNFGVKDKAVSLDSKETPVQQFH-- 810 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 F + G V+ + + + A +SGNF+ Sbjct: 811 -AWTSKFCQEGVNGTKNSQFSGGRGWRMAVVLDGYVISDPVLNVPLKDHASVSGNFSYRE 869 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 LA+ L++G++ I+ E V +LG +G ++ GLV+++ M V Y G Sbjct: 870 VNRLASDLKSGAMSFIPEILSEEVVSPELGHSQRLQGILSVFLGLVVLIALMSVYYKFGG 929 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 ++A ++ LN++L A + L A LTL +AGI+L +G+AVD+N+LV ERIREE ++S Sbjct: 930 VIASVAVLLNLLLIWASMQYLDAPLTLSGLAGIILAMGMAVDANVLVFERIREEYLLSRS 989 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 + S++ G+ +A+S IFDSN+T ++A+ +L G ++GFA+T+ + I SMFT++ + Sbjct: 990 LSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTSLFMT 1049 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 + + I+ K+ + I R W V +++ C Sbjct: 1050 KFFFLIWIQ----KTRETQLHMMNKFIGVKHNFLKECKRLWVVSGAVVVLGCIGLGFGAW 1105 Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVV----------------RSNLESLQIGDISFQNF 611 G+DFKGG L + ++ R + + Sbjct: 1106 DSILGMDFKGGYALTLDSDVCAYNPDQMCSALKKRFREIGLSSRDYRVRKADSSGKVKIY 1165 Query: 612 DGEKNFLVRLQYQPGDSVAQT---------RVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 + Q + G S +VL + S+ + V ++S Sbjct: 1166 FSQNALARVEQAKGGYSEQNGADHHLAQVLQVLSDSSDATSPAAFESSRGSWFKVSGQLS 1225 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF-----FALFGIE 717 ++ + I+ + + +L+Y+ +RF+W +A AI L+ D+ T F L I+ Sbjct: 1226 NKMRTQAIMALFGALGIILLYVSLRFEWRYAFSAICALMHDLLATCSVLVALHFFLHRIQ 1285 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 +L AV A++T++GYS+N+ ++++DR+R++ + + LI+ ++ +TLGR+V T+ Sbjct: 1286 IDLQAVGALMTVLGYSLNNTLIIFDRIREDRREKLFT-PMPILINDALQKTLGRTVMTTA 1344 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ + GG I +FA M GI++ SS++IA P+LLF+ +N+ Sbjct: 1345 TTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSSLYIAPPLLLFMVRKEEQNS 1398 >gi|153854675|ref|ZP_01995925.1| hypothetical protein DORLON_01923 [Dorea longicatena DSM 13814] gi|149752779|gb|EDM62710.1| hypothetical protein DORLON_01923 [Dorea longicatena DSM 13814] Length = 721 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 195/691 (28%), Positives = 339/691 (49%), Gaps = 42/691 (6%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q + ++ +++R++Q E+++ + G+ RI I++PG D +++ Sbjct: 51 ITYQVKDKNPTKEEMSDTIYKLQKRVEQYST-EASVYQEGNDRINIEIPGVTDANKILDE 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG +SF + ++G + A+A Sbjct: 110 LGKPGSLSFQTAD--------------------------GETVLTGTDVKSASAKTGQDD 143 Query: 266 H---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + V+++ + G +F T++NIGK +A++ DG +++PV+ I G+A I+G+ Sbjct: 144 MGNKEYSVELNLTKSGTSKFATATKENIGKQIAIIYDGETISSPVVRSEITGGQAYITGD 203 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 FT E A LA+ +R G L ++L + VGA LG ++ A + GL+L+ LFMI + Sbjct: 204 FTYEEADNLASTIRIGGLKLQLEELRSNVVGAQLGEQALNTSLKAGIIGLILVFLFMIFV 263 Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 Y GL + ++ + + L +L+ TLTLP IAGI+L IG+AVD+N+++ R+REE Sbjct: 264 YRLPGLASSLALVIYTEIVLVILNAFDVTLTLPGIAGIILSIGMAVDANVIIFARVREEM 323 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 + +SV SL GF +A S I D N+T LIA VL+F G G V+GFA T+ + I++SMFT Sbjct: 324 ARGRSVKVSLKSGFQKAMSAIVDGNVTTLIAAAVLWFKGSGTVKGFAQTLAIGIVVSMFT 383 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 A+ I R ++ K + + + I F+ + ISI + Sbjct: 384 ALVITRMIVFAFYGIGIRKE-----SLYYHKMKERKPINFLGKKKVFFSISIAMILAGFV 438 Query: 563 LLFTHGLN------YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 ++ H Y +DFKGG + V ++ + + + + N +K Sbjct: 439 VMGVHSAQGNGALAYSLDFKGGTSMNVKFDKDYSIDEIDKEIVPVVEKVTGDYNIQTQKV 498 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 + +++ + ++ K + E + IS E+ + ++ VI++ Sbjct: 499 SGTKQVVIKTVTLSLSEREKVNKALEDNFGVKESDITAENISSTISNEMRQDAVIAVIVA 558 Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 I ML+YIW RFK FA A+ L+ D+ L F+A+ I T +A +LT++GYS+N Sbjct: 559 TIFMLLYIWFRFKDVRFATSAVLALLHDVLVVLAFYAVSRISVGGTFIACMLTIVGYSIN 618 Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 +V++DR+R+ + L + +L++K I +TL RS+YTS+ FI V + + G S I Sbjct: 619 ATIVIFDRIREELPLMKRNTDLSELVNKCITQTLTRSIYTSLTTFIMVAVLFIMGVSSIR 678 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 FA P+ GIV SS+ + + + Sbjct: 679 EFAAPLMVGIVCGGYSSVCVTGALWYVMKTK 709 Score = 124 bits (311), Expect = 6e-26, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 76/181 (41%), Gaps = 4/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +VG ++ + + + II I + +++ ++ L + L++ L Sbjct: 229 RSNVVGAQLGEQALNTSLKAGIIGLILVFLFMIFVYRLP-GLASSLALVIYTEIVLVILN 287 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + L +A ++ IG +V+ V+++ R+R+ M S + + + + Sbjct: 288 AFDVTLTLPGIAGIILSIGMAVDANVIIFARVREEMA---RGRSVKVSLKSGFQKAMSAI 344 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 V ++ I+ + G + FA +A GIVV+ +++ I I+ Y + Sbjct: 345 VDGNVTTLIAAAVLWFKGSGTVKGFAQTLAIGIVVSMFTALVITRMIVFAFYGIGIRKES 404 Query: 833 I 833 + Sbjct: 405 L 405 Score = 70.1 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 7/143 (4%) Query: 1 MRNNP-WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + L +L ++I +GL + + +S I LGLDL GG + + Sbjct: 1 MKKSKSILSLLLAVILIVGLGFTVITGIGKSKSGAM------KNIKLGLDLAGGVSITYQ 54 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 V + + + +L+ +++ ++ ++I + I D++ Sbjct: 55 VKDKNPTKEEMSDTIYKLQKRVEQYSTEASVYQEGNDRINIEIPGVTDANKILDELGKPG 114 Query: 120 QGVNSKLNVDPKKNLLVTTTEKE 142 + + + Sbjct: 115 SLSFQTADGETVLTGTDVKSASA 137 >gi|212638566|ref|YP_002315086.1| bifunctional preprotein translocase subunit SecD/SecF [Anoxybacillus flavithermus WK1] gi|212560046|gb|ACJ33101.1| Preprotein translocase subunits SecDF [Anoxybacillus flavithermus WK1] Length = 748 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 187/697 (26%), Positives = 342/697 (49%), Gaps = 28/697 (4%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 +++ + ++ + +RI+ +G+SE I G+ RI +QL G +D ++ R++L T A Sbjct: 53 EGEKITKDVLLSTVSALNKRINVLGVSEPRIDVEGNDRIRVQLAGVKDQNKAREILSTEA 112 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 K++F V M G + + + K + + AN + + V+ Sbjct: 113 KLTFRDV----HDNVLMDGSDLVEGGAKQTFDDKGKPSV---AIQLKDANKFKEVTQKVL 165 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 ++ + + + + ++A +N+ I GNFT+E A Sbjct: 166 SMAPNNVLVIWLDFEEGVDSYAKEVGKEHPKFISAAQVNEVFNQTDVSIVGNFTVEEAKQ 225 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LA +L AG+LP++L + +VGA G ++ K A + G+ L+ LFM++ Y G+VA Sbjct: 226 LADLLNAGALPVELKEIYSTSVGAQFGEQALQKTIFAGIIGIALVFLFMLMFYRLPGIVA 285 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 ++ + + L L + + LTLP IA ++LG+G+AVD+NI+ ERI++E + +S+ Sbjct: 286 VVTLSVYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKDELKLGKSLMS 345 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 + +G +++TI D+NIT +IA VVLF +G +V+GFA + +SIL S TA+ R + Sbjct: 346 AYRIGNRGSFATILDANITTIIAGVVLFAYGTSSVKGFATMLIISILASFITAVYGTRLL 405 Query: 511 MIFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGISILFS 557 + +++ + + + F++ IS Sbjct: 406 LGLLVKSRLFDKKPHYFGVNPKDILDIAKVTDDTDVPTKFARLDFVKRSKLFFAISGAMF 465 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617 + LL T LN GIDF G ++ +++ + + V+ L+ LQ+ Sbjct: 466 AIGLVLLLTAKLNLGIDFSSGTRVDLMSEKSLTTEEVKQELKQLQLEPKDIVLSGNNNEM 525 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + D +++ K+K N V P + +EL R + V+I++ Sbjct: 526 AIVRFLGVLDQKEISKLKSHFKEKYG------VEPNVSTVSPTVGKELARNAFISVLIAS 579 Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737 I ++IY+ IRF+ Y A+ AI L+ D + FF+L +E +LT +AAVLT++GYS+ND Sbjct: 580 IGIIIYVTIRFEMYMAIAAIVALLHDAFFIIAFFSLTRLEVDLTFIAAVLTIVGYSINDT 639 Query: 738 VVVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 +V +DR+R M + T +D+++K++ +T GRSV T + +V+ + ++G I Sbjct: 640 IVTFDRIRYLMKKRKVKTVDDLKDVVNKALQQTFGRSVNTVLTVVFTVVALLLFGSEAIR 699 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +F+ + G++ SS+FIAA + L + K + Sbjct: 700 NFSFALLAGLISGTYSSLFIAAQLWLIWKAKQLKKGK 736 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 45/134 (33%), Gaps = 18/134 (13%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60 + + + ++ G++ + I LGLDL+GG ++ EV Sbjct: 3 KRSRIIAFFLLVVLLGGMMGTTAEKI-------------VKNIKLGLDLQGGFEILYEVK 49 Query: 61 ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVT 116 + + L L + G+ + + ++I + A + + + ++ Sbjct: 50 PTKEGEKITKDVLLSTVSALNKRINVLGVSEPRIDVEGNDRIRVQLAGVKDQNKAREILS 109 Query: 117 LFLQGVNSKLNVDP 130 + ++ + Sbjct: 110 TEAKLTFRDVHDNV 123 >gi|29839945|ref|NP_829051.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila caviae GPIC] gi|29834292|gb|AAP04929.1| secDF protein, putative [Chlamydophila caviae GPIC] Length = 1404 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 183/835 (21%), Positives = 336/835 (40%), Gaps = 51/835 (6%) Query: 41 KNRISLGLDLRGGSHLVLEV---DEDDFVNGF-LQMYSDELRSFLKKEGIGVFSMRQIQN 96 N + G+D GG + L + + SDEL + L K G+ +R+ + Sbjct: 576 DNVLRFGIDFIGGKQIRLAFKDHQGKQLTDKEGILKVSDELYARLNKLGVAEVEIRREGD 635 Query: 97 KITLSFADSRFK--ENIADKVTLFLQGVN------SKLNVDPKKNLLVTTTEKEISIVLS 148 + LS S E I + VN S L + ++ L S Sbjct: 636 NVHLSVPGSTKISSEEILGTSQMTFHVVNEKFSHYSALRYEVQRFLDYLWFTARSQETTS 695 Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGIS---ESTIQRLGSHRILIQLPGEQDPSRLRQL 205 I+++ S + + + E + Sbjct: 696 PEAINKLASRIFNDQSFPLPTSVKEAVAKLQQEGLAFPEVGGEAASSHLDTTYSMIAIEK 755 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 V N + G + G Y++ V+ + I + Sbjct: 756 NIEGRANPLMIVFRNYALDGASLKNIRPEFAVGEGYILNFSVKDTAIAQRAHNISPTESF 815 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 H + G + V+ + + + A A +SG F+ Sbjct: 816 HAWTAAYC--QEGVSGTTNSQHSSGRGWRMAVVLDGYVVSDPVLNAPLKDHASVSGKFSH 873 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 LA L++GS+ ++ E + +LG +G +I GL ++++ M V Y Sbjct: 874 REVNRLATDLKSGSMSFVPEVLSEEVISPELGKQQRTQGIISICLGLAVLIILMSVYYKF 933 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A ++ LN++L A L L A LTL +AGIVL +G+AVD+N+LV ERIREE + Sbjct: 934 GGVIASGAVILNLLLIWAALQYLDAPLTLTGLAGIVLAMGMAVDANVLVFERIREEYLLS 993 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +S+ S++ G+ +A+S IFDSN+T ++A+++L G ++GFA+T+ L I SMFTA+ Sbjct: 994 RSLTQSVEAGYKKAFSAIFDSNLTTILASLLLLVLDTGPIKGFALTLILGIFSSMFTALF 1053 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + + + + K+ + I R W V S++ C Sbjct: 1054 MTKFFFMVWMN----KTQETQLHMMNKFIGIKHDFLKECKRLWMVSGSVIVLGCVALGFG 1109 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVV-----------------RSNLESLQIGDISF 608 G+DFKGG + + + VV R Sbjct: 1110 AWNSVLGMDFKGGYAFTLDMSDQKAVDVVQFRNKLGDKFKQVGLSSRDFKIKTLDSSEKI 1169 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGPKI 661 + + + + L +V +++ ++ ++ V + Sbjct: 1170 KIYFSQNALTRVQASEKQVFETPDPNLSLVMGILSDTGIDTSSESFKDTQNFWLKVSGQF 1229 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG-----I 716 S ++ ++ + + + +L+Y+ +RF+W +A A+ LI D+ T I Sbjct: 1230 SNKMRQQACIALAGALAIILLYVSLRFEWRYAFSAVCALIHDLVATCAVLVATHFFLQKI 1289 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 + +L AV A++T++GYS+N+ ++++DR+R++ + + LI+ ++ +TLGR+V T+ Sbjct: 1290 QIDLQAVGALMTVLGYSLNNTLIIFDRIREDRQEKLFT-PMPILINDALQKTLGRTVMTT 1348 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +L + GG I +FA M GI++ SS++IA P+LLF+ +N Sbjct: 1349 ATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERNR 1403 >gi|294501372|ref|YP_003565072.1| protein-export membrane protein SecDF [Bacillus megaterium QM B1551] gi|294351309|gb|ADE71638.1| protein-export membrane protein SecDF [Bacillus megaterium QM B1551] Length = 745 Score = 301 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 194/694 (27%), Positives = 340/694 (48%), Gaps = 26/694 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D + A+ ++E +RQR+D +G+SE +IQ G+ RI +QL G + + R LL T A Sbjct: 54 GDVIDKKALNSTVEALRQRVDVLGVSEPSIQIEGNDRIRVQLAGVTNQKQARDLLSTQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V G + S +++ + P Sbjct: 114 LTFRDVNDKVLMDGTDLAQGGAKQSFDQSNQPSVSLKLKNAKKFEKITRELSQKPAPNNL 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 I +E +D+ K + A V + GNFT+++A L Sbjct: 174 IVIWLD-----YEEGKDSYQKEATKQNPKYLSAASVSSVLTQPDVEISGGNFTVKSATQL 228 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AGSLP+KL+ + +VGA G ++++ A + G+ +I L+M+ Y GL+A Sbjct: 229 AELLNAGSLPVKLDELYSTSVGAQFGEEALHTTILAGIIGIGIIFLYMLFFYRLPGLIAV 288 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + L L + + +TLP IA ++LG+G+AVD+NI+ ERI++E + +SV + Sbjct: 289 ITLSFYIYLNLVVFDWMHVVMTLPGIAALILGVGMAVDANIITYERIKDELKTGRSVISA 348 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TIFD+NIT ++A +VLFF+G +V+GFA T+ + I++S TA+ R +M Sbjct: 349 YRAGNRRSLATIFDANITTMLAALVLFFYGQSSVKGFATTLMIGIVLSFVTAVYGTRLLM 408 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ + + I D I F++ R S + I Sbjct: 409 SLLVNSRWFDKKPGYFGVKKEQIHDLSKDDGTTVLPTAWDKIDFVKYRKAFFTFSSVLVI 468 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I + LN GIDF G ++ + AN V + ++ ++SL I + Sbjct: 469 IGIISVAVFRLNLGIDFTSGTRIEIPANHTVTQAEIQREMKSLDIKTDDVVITGKSNDTG 528 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V + + + K K N V P + +EL + ++ ++I++I Sbjct: 529 VVRVVGVLNKKEIANLKDHFKDKYGSE------PNVSTVSPTVGKELAKNAMMAIVIASI 582 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF++Y AL A+ L+ D + F+L +E +LT +AAVLT++GYS+ND + Sbjct: 583 GIIIYVTIRFEFYMALAAVLALLHDAFFIVTVFSLTKLEVDLTFIAAVLTIVGYSINDTI 642 Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R+NM+ + + +++ S+ ET RS+ T + I+V+ + ++G I + Sbjct: 643 VTFDRIRENMQKFKSKSFDDLAFIVNLSLRETFTRSMNTVLTVVIAVVALLLFGSESIQN 702 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F+I + G+++ A SS+FIAA + L + K Sbjct: 703 FSIALLVGLILGAYSSVFIAAQLWLVWKGKQLKR 736 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 77/178 (43%), Gaps = 4/178 (2%) Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 VG + E + I+ II + +Y+ ++ L A+ TL I L F Sbjct: 247 TSVGAQFGEEALHTTILAGIIGIGIIFLYMLFFYRLP-GLIAVITLSFYIYLNLVVFDWM 305 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 + L +AA++ +G +V+ ++ Y+R++ +K T S +L Sbjct: 306 HVVMTLPGIAALILGVGMAVDANIITYERIKDELK---TGRSVISAYRAGNRRSLATIFD 362 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ ++ L + +G S + FA + GIV++ ++++ ++ + + R + + Sbjct: 363 ANITTMLAALVLFFYGQSSVKGFATTLMIGIVLSFVTAVYGTRLLMSLLVNSRWFDKK 420 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 49/381 (12%), Positives = 113/381 (29%), Gaps = 15/381 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQN 96 I LGLDL+GG ++ +V L + LR + G+ S++ + + Sbjct: 30 KDIKLGLDLQGGFEILYKVSPAKKGDVIDKKALNSTVEALRQRVDVLGVSEPSIQIEGND 89 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQV 155 +I + A ++ D ++ +N + + + S S + Sbjct: 90 RIRVQLAGVTNQKQARDLLSTQANLTFRDVNDKVLMDGTDLAQGGAKQSFDQSNQPSVSL 149 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 ++ +I R+ + + + + + + +++ ++ + A +S Sbjct: 150 KLKNAKKFEKITRELSQKP--APNNLIVIWLDYEEGKDSYQKEATKQNPKYLSAASVSSV 207 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS-------GIHLNGATANFDPKTHKP 268 P+ G F V+ V++ G + Sbjct: 208 LTQPDVEISGGNFTVKSATQLAELLNAGSLPVKLDELYSTSVGAQFGEEALHTTILAGII 267 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 + I F M I + L+ V + +P A I G A Sbjct: 268 GIGIIFLYMLFFYRLPGLIAVITLSFYIYLNLVVFDWMHVVMTLPGIAALILGVGMAVDA 327 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 I+ L +++ G +I+ + +++ + + Sbjct: 328 NIITYERIKDELKTGRSVISAYRAGNRRSLATIFDANITTMLAALVLFFYGQSSVKGFAT 387 Query: 389 VADFSIFLNVILTLALLSLLG 409 I L+ + + LL Sbjct: 388 TLMIGIVLSFVTAVYGTRLLM 408 >gi|297190022|ref|ZP_06907420.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces pristinaespiralis ATCC 25486] gi|297150338|gb|EFH30568.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces pristinaespiralis ATCC 25486] Length = 774 Score = 301 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 200/717 (27%), Positives = 354/717 (49%), Gaps = 38/717 (5%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 I + + A +++ME++R+R+D +G++E ++ R G RI+++LPG +DP Sbjct: 38 GTRIVLETRDSPTVTADREATDRAMEVLRRRVDGLGVAEPSLARSGERRIVVELPGLKDP 97 Query: 200 SRLRQLLGTTAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254 +++G TA+++FH V P ++ V D+ G+ + Sbjct: 98 REAAKVIGRTAQLTFHPVTGTSEGPASAPAKDGARVLADPDAPGSFLRLGPTALTGEGVE 157 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------- 301 + + VD+SF A+++ +T + A Sbjct: 158 DAEAVLDTLEGRGWTVDLSFRGDAAKQWARITGEAACAAPADPARRVAIVLDDAVVSAPG 217 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + ++ I G AQI+G FT + A LAA+++ G+LP+ + VE+ VG LG++++ Sbjct: 218 MQSSVPCGAGITGGSAQITGGFTPDEARDLAALVKGGALPVPVTTVEQSTVGPTLGAEAV 277 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 A V GL+ LF+IV+Y GL+A ++ L +++ A + LGATLTLP +AG V Sbjct: 278 RASAAAAVIGLLCTGLFVIVVYRLLGLLATVALALYGLISYAAVVALGATLTLPGLAGFV 337 Query: 422 LGIGLAVDSNILVNERIREENRK--------NQSVFCSLDMGFSRAYSTIFDSNITALIA 473 L IG+AVD+N+LV ER REE + + + SL GF +A+S + DSNIT L+A Sbjct: 338 LAIGIAVDANVLVFERAREEFTRPGGRGGTKRRDLKSSLRTGFGKAWSAVADSNITTLLA 397 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLS 529 +LF F G V+GF +T+ + +L SM +A+ I R + + + ++ + Sbjct: 398 AGLLFVFATGPVKGFGVTLAIGVLASMVSAMLITRLLAEWALSVPYVRRRPALTGMAGPG 457 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 R + MR R +GI + ++ + G+ +G++F GG + A R V Sbjct: 458 RLRERLARRTPRLMRHRRRWLGICSGLLLLAVAGIGVRGVEFGVEFTGGRVVQYTAERSV 517 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 D R + + D Q+ D E ++ + ++ Sbjct: 518 DADTAREAVVAAGFPDAVVQSTDDNG-------ISVRTKERGDDEQERIRGALDDVAGGL 570 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 +++ +++GP + EL ++ + ++ A L+Y+ +RF+W FA A+ + D+ +G Sbjct: 571 SVERDDLIGPSLGSELRMYALIALGVAVAAQLLYLSVRFRWTFATAAVVAMAQDVALVVG 630 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 FA G + +AA+LT++GYSVND VVV DR+R+ ++ SI L D+++ +TL Sbjct: 631 LFAWLGKPMDSVFLAALLTVVGYSVNDTVVVLDRLRE-LRRTGGSIPLETLADRAVAQTL 689 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 R+V T M A ++ +AV GG + F+I + G+V+ +S++F A P+ L + Sbjct: 690 PRTVNTGMGALFVLVALAVLGGDSLTDFSIALLAGVVLGMASTVFTAMPVALLLQAR 746 Score = 82.4 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 31/258 (12%), Positives = 60/258 (23%), Gaps = 26/258 (10%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV-DEDD 64 W ++ + + L +AL LGLDLRGG+ +VLE D Sbjct: 8 WRALIALAVVAVSLYVAL-----------------TTPARLGLDLRGGTRIVLETRDSPT 50 Query: 65 FVNGF--LQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121 + LR + G+ S+ + + I + + A + Q Sbjct: 51 VTADREATDRAMEVLRRRVDGLGVAEPSLARSGERRIVVELPGLKDPREAAKVIGRTAQL 110 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST- 180 + + + + + + E + + E Sbjct: 111 TFHPVTGTSEGPASAPAKDGARVLADPDAPGSFLRLGPTALTGEGVEDAEAVLDTLEGRG 170 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 S R + VL + + Sbjct: 171 WTVDLSFRGDAAKQWARITGEAACAAPADPARRVAIVLDDAVVSAPGMQSSVPCGAGIT- 229 Query: 241 YLVEDKVEISGIHLNGAT 258 +I+G Sbjct: 230 ---GGSAQITGGFTPDEA 244 >gi|291522838|emb|CBK81131.1| protein translocase subunit secF/protein translocase subunit secD [Coprococcus catus GD/7] Length = 723 Score = 301 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 201/688 (29%), Positives = 348/688 (50%), Gaps = 21/688 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + D S + ++ ++QR++ E+ + + G++R+ + +PG D ++ Sbjct: 52 ITYEADEDNPSSEDMNDTVYKLQQRVEAWST-EAEVYQEGTNRVNVDIPGVYDAEKILSE 110 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG +SF + + + + DG +V + S + + + Sbjct: 111 LGNPGSISFCEAKSDAATGKEVL--------DGYCEVVGGEGIKSAQATSQKDSYGNT-- 160 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + VV + F + GA+ F E T NIGKP+ ++ DG++++ P +NQAI +G+ I GNFT Sbjct: 161 -QYVVSLMFTDEGAKAFAEATARNIGKPIYIIYDGKIISYPTVNQAITNGQCVIEGNFTY 219 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 + LA +RAG L ++LN + + V A LG +++ A GLV+++LFMIV+Y Sbjct: 220 DDVNSLATTIRAGVLKLQLNEISSKVVSAKLGDEAVKTSLMAGAIGLVVVMLFMIVVYWI 279 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G+ A ++ L V L L+ L TLTLP IAGI+L +G+AVD+N+++ RIREE Sbjct: 280 PGVAAALALLLYVAAMLCFLNGLDVTLTLPGIAGIILSVGMAVDANVIIFTRIREEIAAG 339 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 ++V ++ +GF +A S + D NIT LIA VL+ G G ++GFAIT+ L I++SMFTA++ Sbjct: 340 KNVREAIKIGFGKALSAVIDGNITTLIAAAVLYLKGTGTIKGFAITLALGIVLSMFTALA 399 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 I R +++ + + + C + + S+ Sbjct: 400 ITRFVLMALYGIGFKDAKFYGKQKEAKVKNFCGMKKITYVIAVICICAGFVSMGVHASAG 459 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDL----SVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 LNY +DF GG + V +++ L + G Q + + + + Sbjct: 460 NKALNYSLDFTGGTAMTVNFKDYLEVPGSDEDDLRKLFESEAGTTDIQFQNVSGSPEIVI 519 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 + DS + V + + +K E + IS E+ I+ VII+ + ++ Sbjct: 520 KTPVLDSEHRAAVKDALMEKYALEQSDI---TEENISGTISGEMRTNAILSVIIAGVFIM 576 Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 IYIW+RF+ F GAI L+ D+ L +++ I T +A +LT++GYS+N +VV Sbjct: 577 IYIWVRFRDIKFGAGAIIALLHDVLVVLAVYSIARIPVGTTFIACMLTIVGYSINATIVV 636 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 YDR+R+N + ++++ SI++TL RS+ TS+ I VL + + G + I FA+P Sbjct: 637 YDRVRENSHTMLK-ATTEEIVNTSISQTLSRSINTSLTTLIMVLLIYIMGVTSIKEFALP 695 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRA 828 M GI+ SS+FI+ I + + Sbjct: 696 MMAGIIAGTFSSVFISGTIWAVMKGKKK 723 Score = 118 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 88/180 (48%), Gaps = 4/180 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 ++++V K+ E ++ ++ I + +++++ + + W + A L+L + L F Sbjct: 242 SSKVVSAKLGDEAVKTSLMAGAIGLVVVMLFMIVVY-WIPGVAAALALLLYVAAMLCFLN 300 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 + L +A ++ +G +V+ V+++ R+R+ + + R+ I + L Sbjct: 301 GLDVTLTLPGIAGIILSVGMAVDANVIIFTRIREEIAA---GKNVREAIKIGFGKALSAV 357 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+ + + G I FAI +A GIV++ +++ I +L+ +Y K+A+ Sbjct: 358 IDGNITTLIAAAVLYLKGTGTIKGFAITLALGIVLSMFTALAITRFVLMALYGIGFKDAK 417 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 6/116 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + WLV++ ++ + + I LGLDL GG ++ E D Sbjct: 4 KKKSWLVLIVVVLMIAACGYVSAYGYGKDHIG------TAKNIKLGLDLAGGVNITYEAD 57 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ED+ + + +L+ ++ ++ N++ + E I ++ Sbjct: 58 EDNPSSEDMNDTVYKLQQRVEAWSTEAEVYQEGTNRVNVDIPGVYDAEKILSELGN 113 >gi|290955188|ref|YP_003486370.1| SecDF protein-export membrane protein [Streptomyces scabiei 87.22] gi|260644714|emb|CBG67799.1| putative SecDF protein-export membrane protein [Streptomyces scabiei 87.22] Length = 752 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 203/725 (28%), Positives = 332/725 (45%), Gaps = 46/725 (6%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +I + + S A ++++E++R RID +G++E T+ R G +RI+++LPG QDP Sbjct: 37 GTQIVLETRPTDTTPADSEATDRTLEVLRGRIDALGVAEPTLTRSGDNRIVVELPGVQDP 96 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKG------------------FMFGVRFLRDSDGNQY 241 + ++LG TA+++FH+VL + G L D G Sbjct: 97 AEAAEVLGRTARLTFHQVLGTTTADATDKNADRAEEKEQAKEEKRKLGDTVLADESGTLL 156 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN------------ 289 +E A V + F+ G + +T Sbjct: 157 RLEAAALTGQDVKEAAARLDQQNGTGWHVTLDFEGAGGDGWARLTGRAACAPAGDPARRV 216 Query: 290 -IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 I ++ ++ + I G QI+G+F + A LA ++ G+LP+ + VE Sbjct: 217 AIVLDDKIISSPQIDPSVRCETGISGGSTQITGSFGADEAKELALLINGGALPVPVENVE 276 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 +R VG LG+++I A G L LF+I +Y G++A ++ +++ A L+ L Sbjct: 277 QRTVGPTLGAEAIEASAWAAAVGTTLTALFIIAVYRLMGVLATVALLCYGLISYAALAAL 336 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDS 466 GATLTLP +AG VL IG+AVD+N+LV ER REE ++ S +L GF A+S I DS Sbjct: 337 GATLTLPGLAGFVLAIGMAVDANVLVFERAREEYAAQRRPSPRSALTAGFRGAFSAITDS 396 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI- 525 N+T LIA +LFF G VRGF +T+G+ +L SMF+A+ I R + ++ Sbjct: 397 NVTTLIAAGLLFFLASGPVRGFGVTLGIGVLASMFSALVITRVLADHAAFRPSVRRRPRL 456 Query: 526 ---NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 Q MR + S + ++ + GL++GI+F GG + Sbjct: 457 TGIARTGAVRDRLTRTPPQLMRRPRRWLAASAVVLAVAVAGIGVRGLDFGIEFTGGRLVE 516 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 PVD R+ L Q V + Sbjct: 517 YTTT-PVDPDRARAALADAGFPRAVVQTSGDNG-------LTVRTERLSEAQAAAVTDTV 568 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + E +GP + +EL ++ + ++ A L+Y+ RF+W F A+ L Sbjct: 569 GTLTDRADKVRDEAIGPSLGKELRNGALIALAVALGAQLLYLAARFRWLFGTSAVAALAH 628 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ +G FA G + +AA+LT+IGYSVND VVV+DR+R + + F + + Sbjct: 629 DVVILVGVFAWLGKPVDGVFLAALLTVIGYSVNDSVVVFDRVRD-LGRVDRAAPFAAVAN 687 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 +++ +TL R+V T M A + +AV GG + FA+ + G+ V SS+F A P+ + Sbjct: 688 RALLQTLPRTVNTGMGAAFILTALAVLGGDSLTDFALALLIGLAVGTYSSMFTATPLAVE 747 Query: 823 IYDWR 827 ++ R Sbjct: 748 LHRRR 752 >gi|302385030|ref|YP_003820852.1| protein-export membrane protein SecD [Clostridium saccharolyticum WM1] gi|302195658|gb|ADL03229.1| protein-export membrane protein SecD [Clostridium saccharolyticum WM1] Length = 750 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 194/693 (27%), Positives = 336/693 (48%), Gaps = 39/693 (5%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q + + ++ ++ ++QR+ E+ + + G++RI + +PG D + + + Sbjct: 77 ITYQAKEENPSAEDMKDTIYKLQQRVQNYST-EAEVYQEGNNRINVDIPGVSDANTILEE 135 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG + F GNQ V + Sbjct: 136 LGKPGSLIFADETGKTILN-------------GNQVATAKPVITENNGIKEYM------- 175 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 VD++F E G F +VT N+GK +A++ DG++ + PV+ +AI G+ QISG + Sbjct: 176 ----VDLTFTEEGKNLFADVTTKNVGKRIAIIYDGKMYSNPVVREAITQGQCQISGMTSY 231 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A LA+ +R GSL ++L + VGA LG ++I A G ++ +FM+V+Y Sbjct: 232 EEAETLASTIRIGSLSLELEELRSNVVGAKLGQEAITTSLKAGAIGFAILAVFMVVVYLI 291 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G+ + ++ + V + L LLS TLTLP +AGI+L +G+AVD+N+++ RI+EE Sbjct: 292 PGIASVIALSIYVGIILVLLSAFEVTLTLPGVAGIILSVGMAVDANVIIFTRIKEEIGYG 351 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 ++V ++ GF++A S I D N+T LIA VLF+ G G V+GFA T+ + I++SM TA+ Sbjct: 352 KTVKSAIQAGFNKALSAIIDGNVTTLIAAGVLFWRGSGTVKGFASTLAIGIVLSMITALF 411 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 I + ++ + + + + I+F+ + S+L + + L Sbjct: 412 ITKFVLNMLF------HLGFEDPKYYGIKKAGKVIRFLSKKKLWFAGSLLVIVVGLAFLG 465 Query: 566 THGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 + NY ++FKGG V N + L + S + + G + +K Sbjct: 466 VNKSQTGSILNYSMEFKGGTSTNVTFNEDMSLEKISSEVVPVVEGITKDADVQTQKVAGT 525 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 ++ + K + S E + IS+E+ R ++ VII+ I Sbjct: 526 NEVIIKTRTLTVDEREALNKAMVDHFGVESEKITAESISGAISQEMKRDAMIAVIIATIC 585 Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ML+YIW RFK FA A+ L+ D+ L F+AL T +A +LT++GYS+N + Sbjct: 586 MLLYIWFRFKDIRFAGSAVLALVHDVLIVLTFYALLKWSVGSTFIACMLTIVGYSINATI 645 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 V++DR+R+ +K + ++++ SI++TL RS+ TS+ FI V + + G S I FA Sbjct: 646 VIFDRIREYLKTQVK-LGLEEVVNLSISQTLTRSINTSLTTFIMVFVLYILGVSSIREFA 704 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +P+ GIV SS+ I + + + Sbjct: 705 LPLMVGIVCGTYSSVCITGSLWYVMTVQKKGKK 737 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M++N +L ++ + + + I LGLDL GG + + Sbjct: 33 MKSNKGKGLLGLIVSLALVGLFAYFGYTTM-----------SDIKLGLDLAGGVSITYQA 81 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 E++ ++ +L+ ++ ++ N+I + I +++ Sbjct: 82 KEENPSAEDMKDTIYKLQQRVQNYSTEAEVYQEGNNRINVDIPGVSDANTILEELGKPGS 141 Query: 121 GVNSK 125 + + Sbjct: 142 LIFAD 146 >gi|297563000|ref|YP_003681974.1| protein-export membrane protein SecD [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847448|gb|ADH69468.1| protein-export membrane protein SecD [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 885 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 198/886 (22%), Positives = 362/886 (40%), Gaps = 102/886 (11%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE----V 60 W L S++ + A P+ LGLDL GG+ +VLE Sbjct: 10 RWTRALISLLVILVAFGAAWFIPPR----------------LGLDLSGGTQIVLETQDGP 53 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFL 119 + + + LR + + G+ + R +N+I + + A + Sbjct: 54 EGTPANSENTDQVVEVLRQRIDRLGVSEATMSRSGENRIIVELPGVQDPAEAAQIIGQTA 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 Q L V + + + +++ + S Sbjct: 114 QLSFH-------PVLGVGQAGGQGVQAPAPGDSANAPQATADEA------------RAPS 154 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 G GE +L +L+ M + S + V L DSDG Sbjct: 155 DAAAEGGDEAAEGGGGEMTQEQLEELMAQQGGMGGQQPPAGPSAENPEDVVMTLPDSDGT 214 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN-------IGK 292 Q + + + A + V+++F GA ++ +T D + Sbjct: 215 QLQLGETAIKGDQVASAEAALDSVNRAQWTVNVNFRGEGADQWTALTADAACYEQGDPRR 274 Query: 293 PLAVVLDGRVLTAPVI-------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 +A+VLDG++++AP + + S +FT ETA LA ++ GSLP+ + Sbjct: 275 RVAIVLDGQIISAPEVNPEFSCDVGMPGNTTTITSPDFTSETANDLAVLIEGGSLPLPVT 334 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 V+ + VG LG+++I A + GL L++ ++Y G +A ++ ++ L Sbjct: 335 EVQRQTVGPTLGAEAIQASAVAAILGLAFTTLYITLVYRLVGFLAALALGFYTLIAYGAL 394 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN-------------------- 445 + ATLTLP +AG VL IG+A+D+N+L+ ER REE+++ Sbjct: 395 VAINATLTLPGLAGFVLAIGMAIDANVLIFERTREEHQRQAKVYEANKSAGLRDATEDEA 454 Query: 446 -----------------QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 S+ + +G +A+S + D+NIT LIA +LFFF G V+GF Sbjct: 455 AKAESGVLTRKRRRAVPPSLEKAFVVGSRKAWSAVLDTNITTLIAAALLFFFASGTVQGF 514 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLIPDCIAIQFMR 544 +T+ + L+SMF+A+ I R + + +R ++ N + M Sbjct: 515 GVTLSIGTLVSMFSALVIARVFVEWAVRRAVVRKHPAVSGLNRIGGVRTWLVEKNPDLMG 574 Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ--LGVLANRPVDLSVVRSNLESLQ 602 R G+ ++ L ++ N G++F GG V + V + RS + +L Sbjct: 575 HRAKGLIVAGLIVAAAVAAPLIRDTNLGVEFTGGRVLEYEVTSGEGVSVDEARSVISALD 634 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 + + ++ + + E + + E++GP + Sbjct: 635 FPGSDTAVVQESGDGDISVR----TGSISDDDAARIADALGEQTGGVELVSDELIGPSMG 690 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 EL + ++ + + ++Y+ RF+W F + + +L ++ +G F G + Sbjct: 691 DELRNRALIALGAALALQMVYLAWRFRWSFGVSTMLSLAFNLVLVIGLFIWLGKPIDGVF 750 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 +AA+L++IG+SVND VVV+DR+R S F ++ ++++ TL R+V TS+ A I Sbjct: 751 LAALLSVIGFSVNDTVVVFDRVRDEWARDERSK-FSEIANRAVLNTLPRTVNTSIGALII 809 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + + GGS + F+I M G+V S+IF+A P+ +++ W Sbjct: 810 LGFLTFLGGSSLQDFSIAMLVGLVTGVLSTIFVAVPLAIWLQRWDR 855 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 71/246 (28%), Gaps = 39/246 (15%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 D ++T V + + T + VGP + E I+ V I+ Sbjct: 304 TTTITSPDFTSETANDLAVLIEGGSLPLPVTEVQRQTVGPTLGAEAIQASAVAAILGLAF 363 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 +YI + ++ A L G L +A + IG +++ V+ Sbjct: 364 TTLYITLVYRLV-GFLAALALGFYTLIAYGALVAINATLTLPGLAGFVLAIGMAIDANVL 422 Query: 740 VYDRMRKNMKLYTT----------------------------------SISFRDLIDKSI 765 +++R R+ + S Sbjct: 423 IFERTREEHQRQAKVYEANKSAGLRDATEDEAAKAESGVLTRKRRRAVPPSLEKAFVVGS 482 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 + + T++ I+ + + + F + ++ G S+F A I + Sbjct: 483 RKAWSAVLDTNITTLIAAALLFFFASGTVQGFGVTLSIG----TLVSMFSALVIARVFVE 538 Query: 826 WRAKNA 831 W + A Sbjct: 539 WAVRRA 544 >gi|253578288|ref|ZP_04855560.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850606|gb|EES78564.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 802 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 203/691 (29%), Positives = 338/691 (48%), Gaps = 12/691 (1%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q S + ++ +++R++Q E+ + + GS RI +++PG D + Sbjct: 51 ITYQAKESNPTSEEMSDTIYKLQKRVEQYST-EAQVYQEGSDRITVEIPGVTDADTILND 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVR---------FLRDSDGNQYLVEDKVEISGIHLNG 256 LG + F + + F G +++S D + G + Sbjct: 110 LGKPGSLYFITKEDADGNQNFTTGQDGYVLSRTMDEIKESGSVVLEGSDVADAQGGAIQN 169 Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316 + + + G +F E T++N+GK +A+V D +++AP +N+ I GK Sbjct: 170 QNTSAKEYVVSLTLTSDGENSGKTKFAEATKNNVGKQIAIVYDNNIISAPNVNEEISGGK 229 Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376 AQISG +E A LA+ +R GSL ++L + V A LG ++I A GL++++ Sbjct: 230 AQISGMSDLEEAQNLASYIRIGSLGLELEELRSSVVAAQLGEEAISTSVLAGAIGLIIVI 289 Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 +FMI+ Y G+VA ++ L L L L+ TLTLP IAGI+LGIG+AVD+N+++ Sbjct: 290 IFMIIAYRVPGVVAGIALILYTSLMLITLNAFDITLTLPGIAGIILGIGMAVDANVIIYA 349 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 RIREE SV S+ GFS+A+S IFD NIT LIA VL + G G V+GFA T+ L I Sbjct: 350 RIREEIGAGVSVRNSIKSGFSKAFSAIFDGNITTLIAAFVLMWLGSGTVKGFAYTLALGI 409 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 +ISMFTA+ + R ++ + + + A + + Sbjct: 410 VISMFTALVVSRLIVNALYAVGVRDPKFYGSAKERKAVDFLGKKKVFFAISIILILCGPA 469 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 ++ + LNY ++F GG V N +D+ + S + + +N K Sbjct: 470 AMFANSHAGNKALNYSLEFSGGTSTTVTFNEDMDIKTIDSEVTPVVEEVTGDKNVQPTKV 529 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 S+ Q+ + + + + +TE + +S E+ R IV VI++ Sbjct: 530 VGTNQVVIKTRSLNQSEREALQSALVEKFGVDDSTISTESISSTVSSEMRRDAIVAVIVA 589 Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 I ML+YIW RFK FA A+ L+ D+ L F+A+ + T +A +LT++GYS+N Sbjct: 590 TICMLLYIWFRFKDIRFASSAVLALLHDVLVVLAFYAIARVSVGNTFIACMLTIVGYSIN 649 Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 +V++DR+R+N+ + ++++ SI +TL RS+YTS F+ V + + G S I Sbjct: 650 ATIVIFDRIRENLHSGSREK-LAEIVNTSITQTLTRSIYTSFTTFVMVAVLYIMGVSSIR 708 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 FA P+ G++V A SS+ I + + Sbjct: 709 EFAAPLMVGVLVGAYSSVCITGALWYVMKKK 739 Score = 96.3 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 93/233 (39%), Gaps = 4/233 (1%) Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 ++ + + + G S + +I + + +V Sbjct: 208 AIVYDNNIISAPNVNEEISGGKAQISGMSDLEEAQNLASYIRIGSLGLELEELRSSVVAA 267 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ E I ++ I I ++I++ I ++ + A LIL + L F I Sbjct: 268 QLGEEAISTSVLAGAIGLIIVIIFMIIAYRVP-GVVAGIALILYTSLMLITLNAFDITLT 326 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +A ++ IG +V+ V++Y R+R+ + +S R+ I ++ ++ Sbjct: 327 LPGIAGIILGIGMAVDANVIIYARIREEIGA---GVSVRNSIKSGFSKAFSAIFDGNITT 383 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 I+ + G + FA +A GIV++ +++ ++ I+ +Y ++ + Sbjct: 384 LIAAFVLMWLGSGTVKGFAYTLALGIVISMFTALVVSRLIVNALYAVGVRDPK 436 >gi|254445447|ref|ZP_05058923.1| protein-export membrane protein SecD, putative [Verrucomicrobiae bacterium DG1235] gi|198259755|gb|EDY84063.1| protein-export membrane protein SecD, putative [Verrucomicrobiae bacterium DG1235] Length = 852 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 201/734 (27%), Positives = 351/734 (47%), Gaps = 38/734 (5%) Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 L+ S L ++ T + + L + + + ++ II +R++ G+SE Sbjct: 107 LEDSKSNLKKGLDIQGGISVTFEVDPLAL-AEVPEAERNEKLSDAINIIERRVNTYGVSE 165 Query: 179 STIQRLGSHRILIQLPGE--QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 ++ +G +RI +QL G +D L + A++ F +V P S + + + Sbjct: 166 PIVRPVGENRIELQLAGVNTKDNPDLIDTIKAPARLEFREVHPTASPLTDPRPTGYEKMT 225 Query: 237 DGN---------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V+ ++G ++ A + V + G+ F +VT Sbjct: 226 MIQESGGTEREVSLYVKRIPALTGKYVADAFPRTNEMG-GIEVILKLTNDGSDLFADVTA 284 Query: 288 DNIGKPLAV--------VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339 + VLD ++ +AP + + I G A I+G +T A LA L Sbjct: 285 KLASEGSNTGQLGRLAIVLDKQLQSAPTVRERISGGTASITGRYTQREAIDLANTLN-NP 343 Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399 L + L +VE VG + DSI G A + G+ + FMI + G+VA S+ LN++ Sbjct: 344 LELPLEVVEMYEVGPSMAKDSIESGVKASLIGISAVAAFMIAYFMIGGVVALASVVLNIV 403 Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459 + L +L+ ATLTLP IAGIVL +G+AVD+NIL+ ERIREE R +++ +L+ GF++ Sbjct: 404 IVLGVLASFKATLTLPGIAGIVLTVGMAVDANILIFERIREELRSGKNIKSALEGGFNKV 463 Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519 +STIFD+N+T L+ + V+ G G V+GF +T+ + ++ +MF A+ I R ++ + Sbjct: 464 FSTIFDANVTTLLVSFVMLGLGTGPVKGFGLTLAIGVMTTMFCALIITRVLLELLFETGA 523 Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGG 578 +K + I F++ R S + +L + + YGIDF GG Sbjct: 524 LKKFTT------LSLLTNSKIDFLKYRKPAFIASWTLVAIGLTVLVSKKDSIYGIDFTGG 577 Query: 579 IQLGVLANRPVDLSVVRSNLESL--QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 ++ + +D + +R L + + +Q+ G + L+R+Q A L+ Sbjct: 578 DEVVLSFTEKLDEAEIRDALAAAEIGEVNPLYQSQLGTTDELLRIQTGFAKGDAAIEALQ 637 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + +GP + E+ + + + +S +L+YI RF+ + +GA Sbjct: 638 NAF-----PSAEYDVIGKNEIGPSVGAEIQKNAFIAIGLSLGLILLYIAFRFEIGYGVGA 692 Query: 697 ITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 I I DI T+G F L G +F VAA+L ++GYS+ND +VV+DR+R+ + L TS Sbjct: 693 IVATIHDILLTIGVFVLVPGHQFTAPMVAAILLIVGYSLNDTIVVFDRIREELTLRPTSK 752 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 R++++ ++N + RS+ TS ++ + + V+G VI A GI+ SSIFI Sbjct: 753 -LREVLNIAMNAVITRSLLTSFTTLLASVSLMVFGKGVINDIAFTFTIGIITGTFSSIFI 811 Query: 816 AAPILLFIYDWRAK 829 A+P+ F + + Sbjct: 812 ASPVFYFWHKGDRR 825 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 91/227 (40%), Gaps = 4/227 (1%) Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 D Q+ + + Q +++ + + VGP ++++ Sbjct: 304 DKQLQSAPTVRERISGGTASITGRYTQREAIDLANTLNNPLELPLEVVEMYEVGPSMAKD 363 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 I G+ +I A+ ++ F + A+ +++L+I LG A F L +A Sbjct: 364 SIESGVKASLIGISAVAAFMIAYFMIG-GVVALASVVLNIVIVLGVLASFKATLTLPGIA 422 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 ++ +G +V+ +++++R+R+ ++ + + + ++ N+ ++ + Sbjct: 423 GIVLTVGMAVDANILIFERIREELR---SGKNIKSALEGGFNKVFSTIFDANVTTLLVSF 479 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 M G + F + +A G++ ++ I +L +++ A Sbjct: 480 VMLGLGTGPVKGFGLTLAIGVMTTMFCALIITRVLLELLFETGALKK 526 Score = 53.9 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 61/437 (13%), Positives = 134/437 (30%), Gaps = 42/437 (9%) Query: 35 FPSAMPKNRISL--GLDLRGGSHLVLEVD-------EDDFVNGFLQMYSDELRSFLKKEG 85 P+ + ++ +L GLD++GG + EVD + N L + + + G Sbjct: 103 LPTLLEDSKSNLKKGLDIQGGISVTFEVDPLALAEVPEAERNEKLSDAINIIERRVNTYG 162 Query: 86 IGVFSMR-QIQNKITLSFADSRFKE--NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142 + +R +N+I L A K+ ++ D + + +++ T E Sbjct: 163 VSEPIVRPVGENRIELQLAGVNTKDNPDLIDTIKAPARLEFREVHPTASPLTDPRPTGYE 222 Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIR--------QRIDQIGISESTIQRLGSHRILIQLP 194 ++ ++ + + + + R +++G E ++ L Sbjct: 223 KMTMIQESGGTEREVSLYVKRIPALTGKYVADAFPRTNEMGGIEVILKLTNDGSDLFADV 282 Query: 195 GEQDPS---------RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245 + S RL +L + + + + G R++ + + Sbjct: 283 TAKLASEGSNTGQLGRLAIVLDKQLQSAPTVRERISGGTASITGRYTQREAIDLANTLNN 342 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305 +E+ + + +G V L VL Sbjct: 343 PLELPLEVVEMYEVGPSMAKDSIESGVKASLIGISAVAAFMIAYFMIGGVVALASVVLNI 402 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD----LGSDSI 361 ++ + S KA ++ + + A L + E R+ G + Sbjct: 403 VIVLGVLASFKATLTLPGIAGIVLTVGMAVDANILIFERIREELRSGKNIKSALEGGFNK 462 Query: 362 YKGTCAIVAGLVLIVLFMIV---------LYGKWGLVADFSIFLNVILTLALLSLLGATL 412 T L+V F+++ + ++F +I+T LL LL T Sbjct: 463 VFSTIFDANVTTLLVSFVMLGLGTGPVKGFGLTLAIGVMTTMFCALIITRVLLELLFETG 522 Query: 413 TLPSIAGIVLGIGLAVD 429 L + L +D Sbjct: 523 ALKKFTTLSLLTNSKID 539 >gi|225548077|ref|ZP_03769362.1| hypothetical protein RUMHYD_00056 [Blautia hydrogenotrophica DSM 10507] gi|225040753|gb|EEG50999.1| hypothetical protein RUMHYD_00056 [Blautia hydrogenotrophica DSM 10507] Length = 752 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 200/716 (27%), Positives = 345/716 (48%), Gaps = 11/716 (1%) Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187 +N+ + + ++ S + ++ ++QR++Q ES + + GS+ Sbjct: 33 TGAARNINTGLDLAGGVSITYETTVENPSSDDMADTIYKLQQRVEQYST-ESQVYQEGSN 91 Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG---VRFLRDSDGNQYLVE 244 RI +++PG D + + + LG + F + + + F ++ + + ++ + Sbjct: 92 RINVEIPGVTDANSILEELGKPGSLYFIAHKDSEGNENYSFDSSTGGYVLNKELDELQED 151 Query: 245 DKVEISGIHLNGATANFDPKTHKP---VVDISFDEMGARRFFEVTRDNIGKPLAV---VL 298 + ++G + A A + VVD++ + GA++F E T+ Sbjct: 152 GSIVLTGTDVETAKAVIAQDDMQNKENVVDLTLTKAGAKKFAEATKKAYEDNRDSIGIYY 211 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 DG ++ P + I G AQISG + A LA+ +R G L ++L + V A LG Sbjct: 212 DGEFVSVPNVQAEITGGNAQISGMADAQEAENLASTIRIGGLKLELTELRSNVVAAQLGE 271 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 ++I A G+V++++FMI++Y G+VA ++ + + L L+ TLTLP IA Sbjct: 272 EAISTSVVAAAIGMVIVMIFMILMYRVPGVVASVALVIYTDVMLITLNAFDITLTLPGIA 331 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GI+LGIG+AVD+N+++ RIREE SV S+ GF +A+S IFD NIT LIA+ VL Sbjct: 332 GIILGIGMAVDANVIIYARIREEIASGISVRSSIQNGFKKAFSAIFDGNITTLIASFVLM 391 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 + G G V+GFA T+ L I+ISMFTA+ + R ++ + + +I Sbjct: 392 WLGSGTVKGFAYTLALGIVISMFTALVVSRYIVQALFAVGVRDEKFFGRAKQRKVIDFLG 451 Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 +F + + + LNY ++F GG V N +D+ + S + Sbjct: 452 KRRFFFVVSICLILCAPIFMVVHHSSEGKALNYSLEFSGGTSTNVTFNEDMDIKTIDSEV 511 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 L +N K S+ + K + E + E + Sbjct: 512 TPLVERVTGDKNVQPTKVVGTNQVIIKTKSLNLDEREALNKALVDEFGVDESKITAESIS 571 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIE 717 IS E+ I+ VI++ I ML+YIW+RFK FA A+ L+ D+ L F+A+ + Sbjct: 572 STISSEMRNDAIMAVIVATICMLLYIWLRFKDIRFASSAVLALVHDVLVVLAFYAIARVS 631 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 T +A +LT++GYS+N +V++DR+R+NM+ +++++ SI +TL RS+YTS Sbjct: 632 VGNTFIACMLTIVGYSINATIVIFDRIRENMRGKKKKEELKEVVNASITQTLTRSIYTSF 691 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 F+ V + + G S I FA+P+ GIV A SS+ I + + K ++ Sbjct: 692 TTFVMVAVLYIMGVSSIREFALPLIVGIVCGAYSSVCITGALWYVMKTRGMKENKV 747 >gi|224476734|ref|YP_002634340.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus carnosus subsp. carnosus TM300] gi|222421341|emb|CAL28155.1| putative protein-export membrane protein SecDF [Staphylococcus carnosus subsp. carnosus TM300] Length = 758 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 173/700 (24%), Positives = 322/700 (46%), Gaps = 31/700 (4%) Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209 +++ A++ + + + R++ +G+SE IQ ++RI +QL G ++ + R +L + Sbjct: 52 EKGEKIDDKAVQATAKTLENRVNVLGVSEPKIQVENNNRIRVQLAGVKNQNEARDILSSQ 111 Query: 210 AKMSFHKVLPNNSKKGFM--FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 A ++ + G G T + Sbjct: 112 ANLTIRDSDDHVKLTGKDLVQGSAKQEFKQNTNQPAVTFKLKDSKKFKKVTEEISKRKDN 171 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 +V E G E + + A +D IN +G ++ Sbjct: 172 VMVVWLDYEKGDSYQKEKDKKDPKYVSAASVD------QPINSDSVEISGGFNGEKGVQK 225 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A +A +L +GSLP+ L + +VGA G D++ K + G+ +I LF++ Y G Sbjct: 226 AKQIADLLNSGSLPVHLKELYSNSVGAQFGQDALDKTIFGSLLGVGIIYLFIVGFYRLPG 285 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 ++A ++ + +TL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R ++ Sbjct: 286 IIAVITLTTYIYITLVAFNFIHGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRT 345 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 + + + ++ TI D+N+T ++A VLFFFG AV+GFA + L+IL+S TA+ + Sbjct: 346 LKQAFNKANKSSFITILDANLTTVLAAAVLFFFGESAVKGFATMLLLAILMSFVTAVFLT 405 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISI 554 R ++ +++ K FM+ S Sbjct: 406 RILLSLLVQSNYFKKSFWLFGVSKKDRHDINEGIDVYELKTPYDHWNFMKLAKPLFWFSG 465 Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614 + + + +LF LN GIDF G ++ + A+ + V + L+ + + + G Sbjct: 466 IIILAGVVILFIFKLNLGIDFTSGTRVDMKADHKITQQSVTNTLDKVGMK-PDQVSLSGN 524 Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 + +V + + KK V P I +E+ + ++ +I Sbjct: 525 NDSASVQFKHDLSKNEVAKVKDTISKKFGND------PTVNTVSPVIGQEIAKNALLSLI 578 Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 ++I M+IYI +RF+W L +I L+ D + F+LF +E ++T +AAVLT+IGYS+ Sbjct: 579 YASIGMIIYISLRFEWRMGLSSILALLHDAFMIVAVFSLFRLEVDVTFIAAVLTIIGYSI 638 Query: 735 NDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791 ND +V +DR+R+N++ +++ SI +T+ RS+ T + I V+ + ++G Sbjct: 639 NDTIVTFDRVRENLRKIKVITEPEQIDRIVNHSIRQTMTRSINTVLTVVIVVVALLIFGA 698 Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 S I +F++ + G+V SSIFIA P+ + + K + Sbjct: 699 SSIFNFSLALLIGLVSGVFSSIFIAVPLWGMMKKRQLKKS 738 Score = 67.4 bits (162), Expect = 8e-09, Method: Composition-based stats. Identities = 56/465 (12%), Positives = 127/465 (27%), Gaps = 26/465 (5%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQN 96 + LGLDL+GG ++ +V+ + + +Q + L + + G+ ++ + N Sbjct: 30 KDVRLGLDLQGGFEVLYQVNPLEKGEKIDDKAVQATAKTLENRVNVLGVSEPKIQVENNN 89 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A + + D ++ + K L + + + N +Q Sbjct: 90 RIRVQLAGVKNQNEARDILSSQANLTIRDSDDHVK--LTGKDLVQGSAKQEFKQNTNQPA 147 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + + ++ ++I + + + ++ + + + + Sbjct: 148 VTFKLKDSKKFKKVTEEISKRKDNVMVVWLDYEKGDSYQKEKDKKDPKYVSAASVDQPIN 207 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI---------SGIHLNGATANFDPKTHK 267 GF + L + + G + Sbjct: 208 SDSVEISGGFNGEKGVQKAKQIADLLNSGSLPVHLKELYSNSVGAQFGQDALDKTIFGSL 267 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V I + + I + + +P A + G Sbjct: 268 LGVGIIYLFIVGFYRLPGIIAVITLTTYIYITLVAFNFIHGVLTLPGLAALVLGVGMAVD 327 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A I+ L I + + N +I V ++ F + Sbjct: 328 ANIIMYERIKDELRIGRTLKQAFNKANKSSFITILDANLTTVLAAAVLFFFGESAVKGFA 387 Query: 388 LVADFSIFLNVI----LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 + +I ++ + LT LLSLL + + + + Sbjct: 388 TMLLLAILMSFVTAVFLTRILLSLLVQSNYFKKSFWLFGVSKKDRHDINEGIDVYELKTP 447 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 + F A + S I L V+LF F F Sbjct: 448 YDHWNF------MKLAKPLFWFSGIIILAGVVILFIFKLNLGIDF 486 >gi|317470623|ref|ZP_07930009.1| SecD/SecF family protein-export membrane protein [Anaerostipes sp. 3_2_56FAA] gi|316901914|gb|EFV23842.1| SecD/SecF family protein-export membrane protein [Anaerostipes sp. 3_2_56FAA] Length = 752 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 198/686 (28%), Positives = 331/686 (48%), Gaps = 24/686 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + V I+ ++ +++R++ ES + R G +RI I++PG D +++ Sbjct: 56 ITYEVDGKNVSDKNIDDTVYKLQKRVEGYST-ESEVYRQGKNRINIEIPGVTDANKILDE 114 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG ++F + K GN G + Sbjct: 115 LGQPGTLAFMVQDGKSMKTVLT----------GNNVKSAKAQTTEGDN----------GA 154 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 VV + FD+ G + F + T+ N+GKP+ ++ D ++++AP + I G+ I+G + Sbjct: 155 KDYVVALEFDKKGTKAFADATKKNVGKPIYIIYDNQIISAPNVQTVITKGECSITGMESY 214 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A LA+ +R GSLP+KL + V A LG D+I A G L+ + MI LY Sbjct: 215 EAAENLASSIRIGSLPVKLKELRSNVVSAKLGVDAIQTSVKAGAIGFALVCILMIALYYL 274 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A ++ + V++TL L+ TLTLP +AGI+LGIG+AVD+N+++ RI+EE Sbjct: 275 PGVIACLALAIYVLMTLLALNGFNVTLTLPGLAGIILGIGMAVDANVIIYSRIKEEVAMG 334 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 ++V ++ GF +A S I D N+T LIA VL+F G G V+GFA T+G+S+LISMFTA+ Sbjct: 335 KNVGTAIKAGFHKAASAIIDGNVTTLIAVAVLWFKGTGTVKGFAQTLGMSVLISMFTALV 394 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 I R ++ ++ + A V + L + Sbjct: 395 ISRFLVTAAYKFGLRSPKLYGKARALKERDFIGVSRRCMAAALLVIVVGLAFLPINKSKI 454 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 LN+ ++F GG + ++ V + +S + Q Sbjct: 455 GAPLNFDLEFSGGTSSTITFDKSVKVDDSLEKKVVSAYEKVSKSTSVQGQKVKANNQMVI 514 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + ++ + + + TE + IS E+ R IV V+I++I MLIYI Sbjct: 515 KTVELNLSQRKQIESTMKK-DFKAKSVATENISSTISNEMQRDAIVSVVIASICMLIYIA 573 Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 IRFK F AI L+ D+ +++ + T +A +LT+IGYS+N +V++DR+ Sbjct: 574 IRFKDVKFGASAIIALLNDVLIVFAAYSIGRLSVGGTFIACMLTIIGYSINSTIVIFDRI 633 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+NM+ + + +++KSI +TL RS+ TS+ FI V + + G S I FA+ + G Sbjct: 634 RENMQEADNTQ-LKGIVNKSIIQTLTRSINTSLTTFIMVFVLFIMGVSSIRQFALTLMVG 692 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 +V A SS+ I P+ F+ K Sbjct: 693 VVCGAFSSVCITGPLWYFMKTGFKKQ 718 Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 77/181 (42%), Gaps = 4/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +V K+ + I+ + I + I + + + + A L + + TL Sbjct: 237 RSNVVSAKLGVDAIQTSVKAGAIGFALVCILMIALY-YLPGVIACLALAIYVLMTLLALN 295 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + L +A ++ IG +V+ V++Y R+++ + + + I ++ Sbjct: 296 GFNVTLTLPGLAGIILGIGMAVDANVIIYSRIKEEVAM---GKNVGTAIKAGFHKAASAI 352 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+V + G + FA + ++++ +++ I+ ++ Y + ++ + Sbjct: 353 IDGNVTTLIAVAVLWFKGTGTVKGFAQTLGMSVLISMFTALVISRFLVTAAYKFGLRSPK 412 Query: 833 I 833 + Sbjct: 413 L 413 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 7/116 (6%) Query: 8 VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67 +IL + +C G+ I I LGLDL GG + EVD + + Sbjct: 15 IILLAALCAFGIFITAKGLGKN-------KIGRAENIELGLDLAGGVSITYEVDGKNVSD 67 Query: 68 GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 + +L+ ++ RQ +N+I + I D++ Sbjct: 68 KNIDDTVYKLQKRVEGYSTESEVYRQGKNRINIEIPGVTDANKILDELGQPGTLAF 123 >gi|189219947|ref|YP_001940587.1| preprotein translocase subunit SecD [Methylacidiphilum infernorum V4] gi|189186805|gb|ACD83990.1| Preprotein translocase subunit SecD [Methylacidiphilum infernorum V4] Length = 765 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 218/733 (29%), Positives = 369/733 (50%), Gaps = 36/733 (4%) Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + V S K L + ++ + + A++Q++ +IR+RID+ G+SE Sbjct: 41 INAVFSLFPPAEKIKLGLDLKGGTAFLL---ELQGEPSAGALDQAIGVIRKRIDKFGLSE 97 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQ--LLGTTAKMSFHKVLPNNSK------------- 223 IQ +G RI +Q+PG + + L AK+ F V P+ K Sbjct: 98 PIIQPMGKRRISVQIPGLSESEKAAAKEQLSKVAKLEFRLVHPDTDKLLAAIQSGQEKIP 157 Query: 224 ---KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280 + F ++ ++ K E G + +P V I F+E GA+ Sbjct: 158 LGYEILPFSQAESKEGKSESLILVRKREEMGGKYVRRAFRGFDEVGRPTVVIEFNEAGAK 217 Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340 RF E+T +NIGK LA+VLDG V +APVI AI GN T + A LA++L L Sbjct: 218 RFGEITSNNIGKRLAIVLDGEVKSAPVIQTAIFKNAVISGGNMTPKEAEDLASVL-ENPL 276 Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 + I+EER V LG DSI G A +A +VLFM+ Y G+VA ++ +N++L Sbjct: 277 ETPVKILEERGVDPSLGKDSIISGINAALAAFASVVLFMVFYYRLAGIVAVVALLVNLLL 336 Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460 L LL+ TLTLP IAGI+L IG+AVD+N+L+ ERIR+E +V ++ +GF++A+ Sbjct: 337 LLGLLAQFHFTLTLPGIAGIILTIGMAVDANVLIYERIRDELEVGVNVKNAIFIGFNKAF 396 Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 S IFDSN++ +I +++L G G ++GFA+T+ L I+ ++F A+ R + +++ + + Sbjct: 397 SAIFDSNVSLIIPSIILMELGSGPLQGFAVTLVLGIVANLFAALVFSRNLFEWLLSWGML 456 Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGI 579 + + + F++ + V + + I F G+DF GG Sbjct: 457 RKLSMMKFLHKP------NFDFIKWSWITVPAAAILLAVGIATFFLRSGELLGVDFSGGD 510 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 L V + V ++ VR LE +I Q + +++Y G+ Sbjct: 511 SLTVAYKQAVPVAKVRQALEEEKIHPSLLQYSREGNQLVYQVRYGEGEKSVN-------V 563 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 K ++ + VGP + EL + + + + +A+LIY+ +R++W FAL A Sbjct: 564 LKEKFPQAGFSLSRMDSVGPVVGDELKHRAGLALSLGLLAILIYVSLRYEWSFALAAALG 623 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 + D+ +G AL G EF++ + A LT++GYS+N+K+V+ DR+R+ +K ++SF++ Sbjct: 624 QLHDVLLAIGIMALLGKEFDMYLIGAFLTILGYSINEKIVISDRIRETLKFKGANLSFKE 683 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +I++ IN+TL R++ T ++ + M + GG VI FA+ + G++ SS I + Sbjct: 684 IINEGINKTLARTIMTGGTVVLATISMLILGGFVISVFALAILIGVLAGMFSSHLITPAL 743 Query: 820 LLFIYDWRAKNAR 832 L + + K + Sbjct: 744 LYWFHGLAEKKRK 756 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 91/745 (12%), Positives = 215/745 (28%), Gaps = 53/745 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W+ + S I + +L P +I LGLDL+GG+ +LE+ Sbjct: 26 RTKRWVGLACSFFILINAVFSL--------------FPPAEKIKLGLDLKGGTAFLLELQ 71 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFAD--SRFKENIADKVTLF 118 + G L +R + K G+ ++ + +I++ K ++++ Sbjct: 72 GE-PSAGALDQAIGVIRKRIDKFGLSEPIIQPMGKRRISVQIPGLSESEKAAAKEQLSKV 130 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + ++ D K L + +E + + +S +I R + Sbjct: 131 AKLEFRLVHPDTDKLLAAIQSGQEKIPLGYEILPFSQAESKEGKSESLILVRKRE----- 185 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + R P+ + + AK N K+ + ++ + Sbjct: 186 -EMGGKYVRRAFRGFDEVGRPTVVIEFNEAGAKRFGEITSNNIGKRLAIVLDGEVKSAPV 244 Query: 239 NQYLVEDKVEISGIHLNGATANF--DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q + ISG ++ A + + E I A Sbjct: 245 IQTAIFKNAVISGGNMTPKEAEDLASVLENPLETPVKILEERGVDPSLGKDSIISGINAA 304 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + ++ +G + + +L + +G + Sbjct: 305 LAAFASVVLFMVFYYRLAGIVAVVALLVNLLLLLGLLAQFHFTLTLPGIAGIILTIGMAV 364 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 ++ + + + V I + A F +++I+ +L LG+ Sbjct: 365 DANVLIYERIRDELEVGVNVKNAIFIGFNKAFSAIFDSNVSLIIPSIILMELGSGPLQGF 424 Query: 417 IAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSR--------AYSTIFDSN 467 +VLGI + + ++ + + E S+ + ++ T+ + Sbjct: 425 AVTLVLGIVANLFAALVFSRNLFEWLLSWGMLRKLSMMKFLHKPNFDFIKWSWITVPAAA 484 Query: 468 ITALIATVVLFFF-----GGGAVRGFAITMGL---SILISMFTAISIVRAMMIFIIRYKK 519 I + F G G ++T+ + + A+ + + ++ Sbjct: 485 ILLAVGIATFFLRSGELLGVDFSGGDSLTVAYKQAVPVAKVRQALEEEKIHPSLLQYSRE 544 Query: 520 MKSI------DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 + S L F +R VG + + L I Sbjct: 545 GNQLVYQVRYGEGEKSVNVLKEKFPQAGFSLSRMDSVGPVVGDELKHRAGLALSLGLLAI 604 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 ++ L + L ++ I + + F L + Sbjct: 605 LIYVSLRYEWSFALAAALGQLHDVLLAIGIMALLGKEF-DMYLIGAFLTILGYSINEKIV 663 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI---YIWIRFKW 690 + + +++ + + + G + V+++ I+MLI ++ F Sbjct: 664 ISDRIRETLKFKGANLSFKEIINEGINKTLARTIMTGGTVVLATISMLILGGFVISVFAL 723 Query: 691 YFALGAITTLILDITKTLGFFALFG 715 +G + + T F Sbjct: 724 AILIGVLAGMFSSHLITPALLYWFH 748 >gi|255280217|ref|ZP_05344772.1| protein-export translocase protein [Bryantella formatexigens DSM 14469] gi|255269308|gb|EET62513.1| protein-export translocase protein [Bryantella formatexigens DSM 14469] Length = 714 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 205/693 (29%), Positives = 332/693 (47%), Gaps = 25/693 (3%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +SI + + + ++ ++QR+ E+ + + GS RI I++PG D Sbjct: 46 SGGVSITYRAVGEEAPSAEDMSDTIYKLQQRVASYST-EAQVYQEGSDRINIEIPGVSDA 104 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 + + + LG ++F G L +D + G Sbjct: 105 NAILEELGKPGSLTFELSD----------GTVVLEGTDVKTATAGTTPDEMGNS------ 148 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319 + VV++ + G+ +F E T +NIG + +V D +V+++PV+ AI G AQI Sbjct: 149 -------QNVVELVLTDEGSTKFAEATSENIGNIIYIVYDDQVISSPVVQTAITGGTAQI 201 Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 +G E A LA+ +R GSL I+L + VGA LG +I A + GL+L++LFM Sbjct: 202 TGMADHEEAERLASSIRIGSLSIELEELRSNVVGASLGQKAISTSLMAGIIGLILVILFM 261 Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439 V+Y G+VA S+ + L L L+ TLT+ IAGI+L IG+AVD+N+++ RIR Sbjct: 262 AVVYRVPGIVAGVSLLIYTGLDLLCLNAFDLTLTISGIAGIILSIGMAVDANVIIYARIR 321 Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499 EE SV ++ GF +A S I D NIT LIA VL + G G+++GFA T+ L I++S Sbjct: 322 EEIAAGASVKTAIKTGFQKALSAILDGNITTLIAAAVLAWKGTGSIQGFAQTLALGIVLS 381 Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559 MFTA + R +M + + I + + +S ++ Sbjct: 382 MFTACVVSRLIMNAVYTLGVQDEKYYGRAKQVKPIDFVGKRKIFFVISIVLVLSGPVAML 441 Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 LNY ++F GG V N + + ++ + N +K Sbjct: 442 IHNGTDGRILNYSLEFMGGTATTVTFNEDYTIEELEEQVQPVIESVTGDANIQMQKVTGG 501 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 ++ EM +K +++ T+ +TE + IS E+ +V V+I+ I Sbjct: 502 NQVIIKTRELSVDERQEMEEKLVSDFGVDDTLISTESISSTISSEMRSDAVVAVLIATIL 561 Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ML+YIW RFK FA A+ L+ D+ L +A+ I T +A +LT++GYS+N + Sbjct: 562 MLLYIWFRFKDIRFATSAVIALLHDVLVVLACYAIVWISVGNTFIACMLTIVGYSINATI 621 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 V++DR+R+N+K S D+++ SI +TL RS+YTS+ FI V + V G S I FA Sbjct: 622 VIFDRIRENLKGMKKKDSIADVVNLSITQTLTRSIYTSITTFIMVAMLYVLGVSSIREFA 681 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +P+ GI+ SS+ I P+ + Sbjct: 682 LPLMVGIICGGYSSVCITGPLWYVMKTKIKSKQ 714 Score = 111 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 97/242 (40%), Gaps = 4/242 (1%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S N+ + D + + G + + +I + Sbjct: 168 TSENIGNIIYIVYDDQVISSPVVQTAITGGTAQITGMADHEEAERLASSIRIGSLSIELE 227 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + +VG + ++ I ++ II I +++++ + ++ + A +L++ L Sbjct: 228 ELRSNVVGASLGQKAISTSLMAGIIGLILVILFMAVVYRVP-GIVAGVSLLIYTGLDLLC 286 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F + ++ +A ++ IG +V+ V++Y R+R+ + S + I + L Sbjct: 287 LNAFDLTLTISGIAGIILSIGMAVDANVIIYARIREEIAA---GASVKTAIKTGFQKALS 343 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + ++ I+ +A G I FA +A GIV++ ++ ++ I+ +Y ++ Sbjct: 344 AILDGNITTLIAAAVLAWKGTGSIQGFAQTLALGIVLSMFTACVVSRLIMNAVYTLGVQD 403 Query: 831 AR 832 + Sbjct: 404 EK 405 Score = 56.2 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 22/207 (10%), Positives = 52/207 (25%), Gaps = 14/207 (6%) Query: 11 YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF-VNGF 69 + +++ L + I LGLDL GG + ++ Sbjct: 6 SLAVVIGAVVLVLLLGFTTIVGFGPTGTGAARNILLGLDLSGGVSITYRAVGEEAPSAED 65 Query: 70 LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129 + +L+ + ++ ++I + I +++ + Sbjct: 66 MSDTIYKLQQRVASYSTEAQVYQEGSDRINIEIPGVSDANAILEELGKPGSLTFELSDGT 125 Query: 130 P-------------KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + ++ + +VL+ + E II D I Sbjct: 126 VVLEGTDVKTATAGTTPDEMGNSQNVVELVLTDEGSTKFAEATSENIGNIIYIVYDDQVI 185 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLR 203 S +Q + R Sbjct: 186 SSPVVQTAITGGTAQITGMADHEEAER 212 >gi|228475225|ref|ZP_04059951.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus hominis SK119] gi|314936250|ref|ZP_07843597.1| protein-export membrane protein SecDF [Staphylococcus hominis subsp. hominis C80] gi|228270836|gb|EEK12238.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus hominis SK119] gi|313654869|gb|EFS18614.1| protein-export membrane protein SecDF [Staphylococcus hominis subsp. hominis C80] Length = 761 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 172/697 (24%), Positives = 321/697 (46%), Gaps = 24/697 (3%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 ++ A++ + + + R++ +G+SE IQ RI +QL G ++P R++L + A Sbjct: 53 GDGKIDDKALQSTAQTLENRVNVLGVSEPHIQVEDPDRIRVQLAGVKNPDEARKILSSQA 112 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 ++ + G + + Q E V + + K Sbjct: 113 NLTIRDADDHVKLTGKDIVQGSAK-QEFKQGTNEPAVTFKLKDRAKFKKVTEEISKKQEN 171 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 + + ++ ++ IN G +E A Sbjct: 172 MMVVW-LDYKKGDSYHKELEKPEDKRKYVSAASVDQPINSDSVEISGGFQGQQGVERAKQ 230 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 +A +L AGSLP+ L + +VGA G D++ K A + G+ +I LFM+ Y G+VA Sbjct: 231 IAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASMVGVAIIYLFMVGFYRLPGIVA 290 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 ++ + V LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 291 VIALTVYVYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRVGRTLKQ 350 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R + Sbjct: 351 AYSKANKSSFLTIFDSNLTTVIAAAVLFFFGQSSVKGFATMLLLGILMIFITAVFLSRGL 410 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFS 557 + ++ K D F++ +G+SIL Sbjct: 411 LSLLVSSNYFKKKYWMFGVNKNNRHDINEGVDVHDLKTAFEKWNFVKLAKPLIGVSILIL 470 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617 + I +L LN GIDF G ++ + ++ + + V ++ + + Q + Sbjct: 471 VIGIIILSIFKLNLGIDFSSGTRVDLDSDTKLSQTKVERTIKDVGLTPDQIQINGNDNKQ 530 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 ++ +++ V P I +EL + + +I +A Sbjct: 531 ATVQFKNDLSKDETLKLNKVI------NDQYGHKPTVNTVSPMIGQELAKNAMKALIYAA 584 Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737 I ++IY+ +RF+W L A+ L+ D+ + F+L +E ++T +AA+LT++GYS+ND Sbjct: 585 IGIIIYVSLRFEWRMGLSAVLALLHDVFIIVALFSLLRLEVDITFIAAILTIVGYSINDT 644 Query: 738 VVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 +V +DR+R+N+ D++++SI +T+ RSV T + + V+ + ++G S + Sbjct: 645 IVTFDRVRENLHKIKVITEPHQIDDIVNQSIRQTMTRSVNTVLTVVVVVIAILIFGASSL 704 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +F++ + G++ SSIFIA P+ + + K + Sbjct: 705 FNFSLALLIGLLSGVFSSIFIAVPLWGIMKKHQLKKS 741 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 79/178 (44%), Gaps = 4/178 (2%) Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 VG + ++ + K I ++ + +++ ++ + A+ L + + TL F Sbjct: 250 NSVGAQFGQDALDKTIFASMVGVAIIYLFMVGFYRLP-GIVAVIALTVYVYLTLVAFNFI 308 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 L +AA++ +G +V+ +++Y+R++ +++ + + K+ + Sbjct: 309 SGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRV---GRTLKQAYSKANKSSFLTIFD 365 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++ I+ + +G S + FA + GI++ +++F++ +L + + Sbjct: 366 SNLTTVIAAAVLFFFGQSSVKGFATMLLLGILMIFITAVFLSRGLLSLLVSSNYFKKK 423 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 50/412 (12%), Positives = 111/412 (26%), Gaps = 29/412 (7%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65 + + I + LLI F ++++ ++LGLDL+GG ++ +V Sbjct: 7 IIAFILIVALLIVGMGFTYKNVV---------KNVNLGLDLQGGFEVLYQVKPLSGDGKI 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124 + LQ + L + + G+ ++ ++I + A + + ++ Sbjct: 58 DDKALQSTAQTLENRVNVLGVSEPHIQVEDPDRIRVQLAGVKNPDEARKILSSQANLTIR 117 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 + K N V +++ ++ ++I + + + Sbjct: 118 DADDHVKLTGKDIVQGSAKQEFKQGTNEPAVTFKLKDRAKF--KKVTEEISKKQENMMVV 175 Query: 185 GSHRILIQLPG--EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + P R+ + + GF R + L Sbjct: 176 WLDYKKGDSYHKELEKPEDKRKYVSAASVDQPINSDSVEISGGFQGQQGVERAKQIAELL 235 Query: 243 VEDKVEIS---------GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 + + G + V I + M I Sbjct: 236 NAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASMVGVAIIYLFMVGFYRLPGIVAVIALT 295 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 + V L +P A + G A I+ L + + + + Sbjct: 296 VYVYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRVGRTLKQAYSKA 355 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 +I+ V VLF G + + +I A+ Sbjct: 356 NKSSFLTIFDSNLTTVIAAA--VLFFFGQSSVKGFATMLLLGILMIFITAVF 405 >gi|167746207|ref|ZP_02418334.1| hypothetical protein ANACAC_00912 [Anaerostipes caccae DSM 14662] gi|167654200|gb|EDR98329.1| hypothetical protein ANACAC_00912 [Anaerostipes caccae DSM 14662] Length = 753 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 198/686 (28%), Positives = 331/686 (48%), Gaps = 24/686 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + V I+ ++ +++R++ ES + R G +RI I++PG D +++ Sbjct: 56 ITYEVDGKNVSDKNIDDTVYKLQKRVEGYST-ESEVYRQGKNRINIEIPGVTDANKILDE 114 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG ++F + K GN G + Sbjct: 115 LGQPGTLAFMVQDGKSMKTVLT----------GNNVKSAKAQTTEGDN----------GA 154 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 VV + FD+ G + F + T+ N+GKP+ ++ D ++++AP + I G+ I+G + Sbjct: 155 KDYVVALEFDKKGTKAFADATKKNVGKPIYIIYDNQIISAPNVQTVITKGECSITGMESY 214 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A LA+ +R GSLP+KL + V A LG D+I A G L+ + MI LY Sbjct: 215 EAAENLASSIRIGSLPVKLKELRSNVVSAKLGVDAIQTSVKAGAIGFALVCILMIALYYL 274 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A ++ + V++TL L+ TLTLP +AGI+LGIG+AVD+N+++ RI+EE Sbjct: 275 PGVIACLALAIYVLMTLLALNGFNVTLTLPGLAGIILGIGMAVDANVIIYSRIKEEVALG 334 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 ++V ++ GF +A S I D N+T LIA VL+F G G V+GFA T+G+S+LISMFTA+ Sbjct: 335 KNVGTAIKSGFHKAASAIIDGNVTTLIAVAVLWFKGTGTVKGFAQTLGMSVLISMFTALV 394 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 I R ++ ++ + A V + L + Sbjct: 395 ISRFLVTAAYKFGLRSPKLYGKARALKERDFIGVSRRCMAAALLVIVVGLAFLPINKSKI 454 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 LN+ ++F GG + ++ V + +S + Q Sbjct: 455 GAPLNFDLEFSGGTSSTITFDKSVKVDDSLEKKVVSAYEKVSKSTSVQGQKVKANNQMVI 514 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + ++ + + + TE + IS E+ R IV V+I++I MLIYI Sbjct: 515 KSVELNLSQRKQIESTMKK-DFKAKSVATENISSTISNEMQRDAIVSVVIASICMLIYIA 573 Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 IRFK F AI L+ D+ +++ + T +A +LT+IGYS+N +V++DR+ Sbjct: 574 IRFKDVKFGASAIIALLNDVLIVFAAYSIGRLSVGGTFIACMLTIIGYSINSTIVIFDRI 633 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+NM+ + + +++KSI +TL RS+ TS+ FI V + + G S I FA+ + G Sbjct: 634 RENMQEADNTQ-LKGIVNKSIIQTLTRSINTSLTTFIMVFVLFIMGVSSIRQFALTLMVG 692 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 +V A SS+ I P+ F+ K Sbjct: 693 VVCGAFSSVCITGPLWYFMKTGFKKQ 718 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 77/181 (42%), Gaps = 4/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +V K+ + I+ + I + I + + + + A L + + TL Sbjct: 237 RSNVVSAKLGVDAIQTSVKAGAIGFALVCILMIALY-YLPGVIACLALAIYVLMTLLALN 295 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + L +A ++ IG +V+ V++Y R+++ + L + I ++ Sbjct: 296 GFNVTLTLPGLAGIILGIGMAVDANVIIYSRIKEEVAL---GKNVGTAIKSGFHKAASAI 352 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+V + G + FA + ++++ +++ I+ ++ Y + ++ + Sbjct: 353 IDGNVTTLIAVAVLWFKGTGTVKGFAQTLGMSVLISMFTALVISRFLVTAAYKFGLRSPK 412 Query: 833 I 833 + Sbjct: 413 L 413 Score = 69.3 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 7/116 (6%) Query: 8 VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67 +IL + +C G+ I I LGLDL GG + EVD + + Sbjct: 15 IILLAALCAFGIFITAKGLGKN-------KIGRAENIELGLDLAGGVSITYEVDGKNVSD 67 Query: 68 GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 + +L+ ++ RQ +N+I + I D++ Sbjct: 68 KNIDDTVYKLQKRVEGYSTESEVYRQGKNRINIEIPGVTDANKILDELGQPGTLAF 123 >gi|228469988|ref|ZP_04054904.1| putative protein-export membrane protein SecD [Porphyromonas uenonis 60-3] gi|228308369|gb|EEK17207.1| putative protein-export membrane protein SecD [Porphyromonas uenonis 60-3] Length = 963 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 194/800 (24%), Positives = 377/800 (47%), Gaps = 39/800 (4%) Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNS 124 + + + L++ + + G+ ++++ Q +I + + + + + Sbjct: 162 SSAIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFW 221 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR- 183 + + + ++ + + ++ + A E ++ G E+ + Sbjct: 222 RTYTYDEIASDLNDANDRLTAMANGKDLTPADTTATEADSTAVQ--KPATGGVENVLFSK 279 Query: 184 -----LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD- 237 G+ + + + + +L + D Sbjct: 280 LNITNRGTIVGYARRADLDKIDEMLEQAQKQKMIREDLMLLWGNSPIKDPQTGKETDIYE 339 Query: 238 --GNQYLVEDKVEISGIHLNGATANFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKP 293 + ++ G + A + ++PVV ++ ++ GAR++ +T DNIG+ Sbjct: 340 LYAIRGNRNALPDLGGEVVTSARSEVRNDLGQNRPVVTMTMNDEGARKWARLTGDNIGRS 399 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 +A+VLDG V +AP +N I G+++ISG+FT++ LA +L +G + + I +E VG Sbjct: 400 IAIVLDGVVYSAPNVNSEITGGRSEISGHFTVDETTDLANVLNSGRMEASVEIEQESVVG 459 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATL 412 LGS+SI G + ++L++++M + YG GL+AD ++ LN TL +L+ + L Sbjct: 460 PTLGSESIQAGIISFAIAIILLMIYMCLAYGLIPGLIADGALILNSFFTLGVLASFHSVL 519 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TL IAG+VL +G+AVD+NIL+ ERI+EE R +S+ ++ G+ A+S IFDSN+T +I Sbjct: 520 TLSGIAGLVLTLGMAVDANILIFERIKEELRAGKSMTRAIQDGYGNAFSAIFDSNLTTVI 579 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 VL+ FG G +RGFA T+ + ++ S TA+ + R ++ + + +M + Sbjct: 580 TGGVLYAFGTGPIRGFATTLIIGVIASFITAVFLTRIVVEALDKKGRMDKVTYTTFLTRN 639 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 L+ + + + + R G I + + F GLN GI+F GG V +PV + Sbjct: 640 LLNN-PSFKILENRNKGFIIFGSILVLGLIGSFVWGLNRGIEFSGGRNYIVAFEQPVSSA 698 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV-------------- 638 VR L + + E N + ++ E++ Sbjct: 699 EVREALTKPLEEHVLVTSIGTEGNQVRISTNYGIGMAQESEDEELLVIGKVFEGVQKFLP 758 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697 + + + + +++ V P +S+++ R+ I+ VI+S I M +YI +RF+ W F+LGA Sbjct: 759 QGTTQQQFVDNYVVSSQRVSPSMSKDISRQAIIAVILSLIFMGLYILLRFRNWAFSLGAF 818 Query: 698 TTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 ++ + + L F +E + +AA+L +IGYS+ND VVV+DR+R+ + Y Sbjct: 819 ASVATTTLLIVASYILLWQIMPFTMELDQNFIAALLAIIGYSINDVVVVFDRVRETLHNY 878 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811 + ++++++N TL R+V TS + F+ V + + GG+ + SF + GIV Sbjct: 879 PNREE-KLVMNEALNSTLARTVQTSFSTFLVVFIIFLLGGASMRSFTFALLIGIVYGIFC 937 Query: 812 SIFIAAPILLFIYDWRAKNA 831 ++F+A+PI + + + Sbjct: 938 TLFVASPIAYLVRSKQQRKK 957 Score = 52.4 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 79/202 (39%), Gaps = 17/202 (8%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 +I LGLDL+GG ++VL+V+ D + + ++ N Sbjct: 60 ARNQQIGLGLDLKGGMNVVLKVNGRDLLRNLSGHNQSPAF-----IEAIDRAAKEGANDF 114 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 +F ++ N + + ++++E+ L + Sbjct: 115 VGTFV------EAYKELEPSGSLAVIFSNGPLRDVISPKSSDQEVIKELQEKYS-----S 163 Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 AI+ ++ +++ RID+ G+ + G RIL++LPG +P R+R+LL +A + F + Sbjct: 164 AIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFWRT 223 Query: 218 LPNNSKKGFMFGVRFLRDSDGN 239 + + + N Sbjct: 224 YTYDEIASDLNDANDRLTAMAN 245 >gi|329937028|ref|ZP_08286657.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces griseoaurantiacus M045] gi|329303635|gb|EGG47520.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces griseoaurantiacus M045] Length = 773 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 202/709 (28%), Positives = 334/709 (47%), Gaps = 30/709 (4%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +I + ++ + + A ++++E++R+R+D +G++E + R G RI+++LPG QDP Sbjct: 43 GTQIVLQTRDSDTAKADAEATDRALEVLRRRVDGLGVAEPNLVRSGEDRIIVELPGVQDP 102 Query: 200 SRLRQLLGTTAKMSFHKV---LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256 R +LG TA+M+FH V G R L DG + + Sbjct: 103 RRAADVLGRTAQMTFHPVLGLADTADTGKGSSGERVLAGEDGQRLRLGPAALTGEHVKGA 162 Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV-------------LDGRVL 303 + V + F G+ + E+T P +V Sbjct: 163 EGRIDPQQAVGWFVTVDFGGRGSDLWAELTGRAACNPAGDPARRVAIVLDEEIISSPQVD 222 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 + I G QI+G F+ E A LA ++ G+LP+ + +E+R +G LG+++I Sbjct: 223 PSVSCGTGIAGGSTQITGGFSGEEAKELALLVNGGALPVPVETIEQRTIGPTLGAEAITA 282 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 A + G L LF+IV+Y G +A ++ +++ A L LGATLTLP +AG VL Sbjct: 283 SAWAGLIGAALTSLFVIVVYRLLGALATLALACYALVSYAALLALGATLTLPGLAGFVLA 342 Query: 424 IGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 IG+AVD+N+LV ER REE R+ S +LD+GF +A+S I DSNIT LIA +LFF Sbjct: 343 IGMAVDANVLVFERAREEYTARRRPSPRTALDVGFRKAFSAIADSNITTLIAAALLFFLA 402 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN----PLSRFFLIPDC 537 G VRGF +T+ + +L SMF+A+ I R + F + +++ R Sbjct: 403 SGPVRGFGVTLSIGVLASMFSALVITRVLAGFAVNRPAVRTRPAWSGIDRTGRVRAWLGR 462 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + MR + +S + + + + G+ G++F GG + +R V R Sbjct: 463 RRPKLMRRPRRWLAVSGVALVLATAGIAGRGVELGVEFTGGRLIEYSTSRTVSADDAREA 522 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + V++ + + + E++ Sbjct: 523 LTDAGFPRAVVHSSADGD-------LTVRTPDLTDAQEREVRETVGALGGDTEKVRDEMI 575 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + EL K ++ + + L+Y+ +RF+W +A A+ L D+ +G FA G Sbjct: 576 GPSLGAELRGKALLALGAALATQLLYLAVRFRWTYAASAVAALAHDVVLLIGAFAWLGKP 635 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + +AA+LT+IGYSVND VVV+DR+R+ + F ++ D +I TL R+V T + Sbjct: 636 LDGVFLAALLTVIGYSVNDSVVVFDRVRE-LTAGDRRRPFAEVADAAIVSTLPRTVNTGI 694 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 A + + V GG + FA+ + GIVV + SS+F A P+ + + Sbjct: 695 GALFILAALFVLGGDTLTDFALALLIGIVVGSYSSVFTATPLAVVLQGR 743 Score = 77.4 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 59/213 (27%), Gaps = 24/213 (11%) Query: 43 RISLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKI 98 LGLDLRGG+ +VL+ D + LR + G+ + +R +++I Sbjct: 33 PPRLGLDLRGGTQIVLQTRDSDTAKADAEATDRALEVLRRRVDGLGVAEPNLVRSGEDRI 92 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 + + AD + Q + + E + + Sbjct: 93 IVELPGVQDPRRAADVLGRTAQMTFHPVLGLADTADTGKGSSGERVL-----AGEDGQRL 147 Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ---------------DPSRLR 203 + + G + + G DP+R Sbjct: 148 RLGPAALTGEHVKGAEGRIDPQQAVGWFVTVDFGGRGSDLWAELTGRAACNPAGDPARRV 207 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 ++ +S +V P+ S + G Sbjct: 208 AIVLDEEIISSPQVDPSVSCGTGIAGGSTQITG 240 >gi|82751235|ref|YP_416976.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus RF122] gi|82656766|emb|CAI81195.1| protein-export membrane protein [Staphylococcus aureus RF122] Length = 759 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G D + R++L + A Sbjct: 54 GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113 Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ G T K + Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V + G E + N A +D IN G ++ A Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L AGSLP+ L + +VGA G D++ K A G+ LI LFM+ Y GLV Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407 Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 + K + + L F++ +G+SIL Sbjct: 408 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L+ LN GIDF G ++ + + + V ++ + Q + Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 ++ + +K K + V P I +EL + ++ +I + Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N++ TT+ D++++SI +T+ RS+ T + + V+ + +G Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F + + G++ SSIFIA P+ + + K + Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGMMKKRQLKKS 739 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 ++LGLDL+GG ++ +VD D LQ + L + + G+ ++ + N Sbjct: 30 KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A + ++ K + + +Q Sbjct: 90 RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + ++ ++I + + ++ + + + + Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267 GF + + L + + G + Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V + + M I + L +P A + G Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A I+ L I I + + +I+ V ++ F + Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + I + + + L L + L +I + + + + S Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 447 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 A I S + ++ V+L+ F F+ Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487 >gi|166031165|ref|ZP_02233994.1| hypothetical protein DORFOR_00851 [Dorea formicigenerans ATCC 27755] gi|166029012|gb|EDR47769.1| hypothetical protein DORFOR_00851 [Dorea formicigenerans ATCC 27755] Length = 747 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 196/698 (28%), Positives = 335/698 (47%), Gaps = 16/698 (2%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q D + ++ +++R++Q E+++ + GS RI I++PG D + + Sbjct: 51 ITYQVKDDNPSDEEMSDTIYKLQKRVEQYST-EASVYQEGSDRINIEIPGVTDANEILDE 109 Query: 206 LGTTAKMSFHKVLPNNSKKG-------FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258 LG + F ++ + + + + + +SG + A Sbjct: 110 LGQPGSLYFIAQTGSDGSANYSQVNSTGDASKDYQLNKTIEELQADGSIVLSGNDVKSAQ 169 Query: 259 ANFDPKT----HKPVVDISFDEMGARRFFEVTRDN--IGKPLAVVLDGRVLTAPVINQAI 312 A + VV ++F + G +F + T + + + DG ++ P + AI Sbjct: 170 AQTTEDQLTKNKQNVVSLTFTKDGTTKFADATTKALAASQSIGIYYDGAFVSVPNVQAAI 229 Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372 +G+AQISGN T E A LA+ +R G L ++L + VGA LG ++ A GL Sbjct: 230 TNGQAQISGNMTYEEADALASTIRIGGLKLELEELRSNVVGAQLGEQAVATSLKAGAIGL 289 Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432 ++ +FM +Y GL + ++ + L L +L+ TLTLP IAGI+LGIG+AVD+N+ Sbjct: 290 AIVFVFMCCVYLLPGLASGLALLIYTGLVLIILNAFEVTLTLPGIAGIILGIGMAVDANV 349 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 ++ R+REE + +SV SL +GF +A S I D NIT LIA VVL+F G G V+GFA T+ Sbjct: 350 IIFARVREEMVRGRSVKNSLKIGFQKALSAILDGNITTLIAAVVLWFKGSGTVKGFAQTL 409 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDCIAIQFMRARFWGVG 551 + I+ SMFTA+ I R ++ + P I + + Sbjct: 410 AIGIIASMFTALVITRLIVNAFYAVGLRSEKLYYRPKKEREPIDFLSKKKVFFTISLVLI 469 Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611 + L +I + Y ++F+GG V ++ + + + + N Sbjct: 470 AAGLITIGANAGRGKGAFAYSLEFQGGTSTNVTFDKDYSIDEIDKEIVPVVEKVTGDNNV 529 Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 +K ++ + + K + + E + +S E+ R ++ Sbjct: 530 QTQKVAGTNQVIIKTVTLDLDKREALNKAMVDNFGVDESKITAENISSTVSNEMRRDAVI 589 Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 V+I+ I ML+YIW RFK FA A+ L+ D+ +GF+A+ I T +A +LT++ Sbjct: 590 AVVIATICMLLYIWFRFKDIRFATSAVLALLHDVLVVVGFYAIARISVGNTFIACMLTIV 649 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 GYS+N +V++DR+R+ M+ T S +++KSI +TL RS+YTS+ FI V + V G Sbjct: 650 GYSINATIVIFDRIREEMRGKTKSSDVAAVVNKSITQTLTRSIYTSLTTFIMVAVLYVMG 709 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S I FA+P+ G+V A SS+ I + + ++ Sbjct: 710 VSSIKEFALPLMVGVVCGAYSSVCITGALWYVMKRFKK 747 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 31/252 (12%), Positives = 88/252 (34%), Gaps = 4/252 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 ++ S + + + G+ + + Sbjct: 194 TTKFADATTKALAASQSIGIYYDGAFVSVPNVQAAITNGQAQISGNMTYEEADALASTIR 253 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 I + + +VG ++ + + + I + +++ + L + L+ Sbjct: 254 IGGLKLELEELRSNVVGAQLGEQAVATSLKAGAIGLAIVFVFMCCVY-LLPGLASGLALL 312 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 + L F + L +A ++ IG +V+ V+++ R+R+ M S ++ + Sbjct: 313 IYTGLVLIILNAFEVTLTLPGIAGIILGIGMAVDANVIIFARVREEM---VRGRSVKNSL 369 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + L + ++ I+ + + G + FA +A GI+ + +++ I I+ Sbjct: 370 KIGFQKALSAILDGNITTLIAAVVLWFKGSGTVKGFAQTLAIGIIASMFTALVITRLIVN 429 Query: 822 FIYDWRAKNARI 833 Y ++ ++ Sbjct: 430 AFYAVGLRSEKL 441 Score = 65.9 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 26/258 (10%), Positives = 73/258 (28%), Gaps = 13/258 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + + S+I L++ L + I LGLDL GG + +V Sbjct: 1 MKKSR---GILSLIVAAALIVLL--GFTTIVGFGKGHTGSMKNIKLGLDLAGGVSITYQV 55 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 +D+ + + +L+ +++ ++ ++I + I D++ Sbjct: 56 KDDNPSDEEMSDTIYKLQKRVEQYSTEASVYQEGSDRINIEIPGVTDANEILDELGQPGS 115 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + + + + + + ++ + +S Sbjct: 116 LYFI-------AQTGSDGSANYSQVNSTGDASKDYQLNKTIEELQADGSIVLSGNDVKSA 168 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + ++ + + A + + + S + G + Sbjct: 169 QAQTTEDQLTKNKQNVVSLTFTKDGTTKFADATTKALAASQSIGIYYDGAFVSVPNVQAA 228 Query: 241 YLVEDKVEISGIHLNGAT 258 + +ISG Sbjct: 229 IT-NGQAQISGNMTYEEA 245 >gi|282916905|ref|ZP_06324663.1| secF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus D139] gi|283770711|ref|ZP_06343603.1| secF bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus H19] gi|282319392|gb|EFB49744.1| secF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus D139] gi|283460858|gb|EFC07948.1| secF bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus H19] gi|302333310|gb|ADL23503.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus aureus subsp. aureus JKD6159] Length = 759 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G D + R++L + A Sbjct: 54 GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113 Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ G T K + Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V + G E + N A +D IN G ++ A Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L AGSLP+ L + +VGA G D++ K A G+ LI LFM+ Y GLV Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407 Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 + K + + L F++ +G+SIL Sbjct: 408 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L+ LN GIDF G ++ + + + V ++ + Q + Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 ++ + +K K + V P I +EL + ++ +I + Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N++ TT+ D++++SI +T+ RS+ T + + V+ + +G Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F + + G++ SSIFIA P+ + + K + Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGMMKKRQLKKS 739 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 ++LGLDL+GG ++ +VD D LQ + L + + G+ ++ + N Sbjct: 30 KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A + ++ K + + +Q Sbjct: 90 RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + ++ ++I + + ++ + + + + Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267 GF + + L + + G + Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V + + M I + L +P A + G Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A I+ L I I + + +I+ V ++ F + Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + I + + + L L + L +I + + + + S Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 447 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 A I S + ++ V+L+ F F+ Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487 >gi|298694916|gb|ADI98138.1| protein-export membrane protein [Staphylococcus aureus subsp. aureus ED133] gi|323440810|gb|EGA98519.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus O11] gi|323442841|gb|EGB00466.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus O46] Length = 739 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G D + R++L + A Sbjct: 34 GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 93 Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ G T K + Sbjct: 94 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 153 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V + G E + N A +D IN G ++ A Sbjct: 154 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 207 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L AGSLP+ L + +VGA G D++ K A G+ LI LFM+ Y GLV Sbjct: 208 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 267 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 268 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 327 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 328 QAFTKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 387 Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 + K + + L F++ +G+SIL Sbjct: 388 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 447 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L+ LN GIDF G ++ + + + V ++ + Q + Sbjct: 448 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 507 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 ++ + +K K + V P I +EL + ++ +I + Sbjct: 508 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 561 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND Sbjct: 562 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 621 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N++ TT+ D++++SI +T+ RS+ T + + V+ + +G Sbjct: 622 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 681 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F + + G++ SSIFIA P+ + + K + Sbjct: 682 IFNFTLALFIGLISGVFSSIFIAVPLWGMMKKRQLKKS 719 Score = 70.1 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 52/462 (11%), Positives = 119/462 (25%), Gaps = 18/462 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 ++LGLDL+GG ++ +VD D LQ + L + + G+ ++ + N Sbjct: 10 KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 69 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A + ++ K + + +Q Sbjct: 70 RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 127 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + ++ ++I + + ++ + + + + Sbjct: 128 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 187 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267 GF + + L + + G + Sbjct: 188 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 247 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V + + M I + L +P A + G Sbjct: 248 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 307 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A I+ L I I + +I+ V ++ F + Sbjct: 308 ANIIMYERIKDELRIGRTIKQAFTKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 367 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + I + + + L L + L +I + + + + S Sbjct: 368 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 427 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 A I S + ++ V+L+ F F+ Sbjct: 428 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 467 >gi|15924627|ref|NP_372161.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus Mu50] gi|15927217|ref|NP_374750.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus N315] gi|21283316|ref|NP_646404.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus MW2] gi|49486470|ref|YP_043691.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus MSSA476] gi|57650518|ref|YP_186531.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus COL] gi|148268117|ref|YP_001247060.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus JH9] gi|150394185|ref|YP_001316860.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus JH1] gi|151221751|ref|YP_001332573.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus str. Newman] gi|156979955|ref|YP_001442214.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus Mu3] gi|161353523|ref|YP_500252.2| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161509863|ref|YP_001575522.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|162138566|ref|YP_494288.2| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|221141094|ref|ZP_03565587.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317212|ref|ZP_04840425.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732293|ref|ZP_04866458.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733112|ref|ZP_04867277.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus aureus subsp. aureus TCH130] gi|255006422|ref|ZP_05145023.2| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793710|ref|ZP_05642689.1| preprotein translocase, SecDF subunit [Staphylococcus aureus A9781] gi|258410991|ref|ZP_05681271.1| preprotein translocase subunit SecD/SecF [Staphylococcus aureus A9763] gi|258420208|ref|ZP_05683163.1| protein-export membrane protein SecDF [Staphylococcus aureus A9719] gi|258424062|ref|ZP_05686944.1| protein-export membrane protein SecDF [Staphylococcus aureus A9635] gi|258438210|ref|ZP_05689494.1| translocase subunit secF/protein translocase subunit secD [Staphylococcus aureus A9299] gi|258443673|ref|ZP_05692012.1| protein-export membrane protein SecDF [Staphylococcus aureus A8115] gi|258446880|ref|ZP_05695034.1| translocase subunit secF/protein translocase subunit secD [Staphylococcus aureus A6300] gi|258448794|ref|ZP_05696906.1| protein-export membrane protein SecDF [Staphylococcus aureus A6224] gi|258453750|ref|ZP_05701725.1| protein-export membrane protein SecDF [Staphylococcus aureus A5937] gi|262051287|ref|ZP_06023511.1| protein-export membrane protein SecDF [Staphylococcus aureus 930918-3] gi|282893141|ref|ZP_06301375.1| secDF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus A8117] gi|282920186|ref|ZP_06327911.1| secDF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus A9765] gi|282928272|ref|ZP_06335877.1| secDF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus A10102] gi|284024693|ref|ZP_06379091.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus 132] gi|294848666|ref|ZP_06789412.1| secDF [Staphylococcus aureus A9754] gi|296275922|ref|ZP_06858429.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus MR1] gi|300911725|ref|ZP_07129168.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus TCH70] gi|304380766|ref|ZP_07363434.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701435|dbj|BAB42729.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus N315] gi|14247409|dbj|BAB57799.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus Mu50] gi|21204756|dbj|BAB95452.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus MW2] gi|49244913|emb|CAG43374.1| putative protein-export membrane protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57284704|gb|AAW36798.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus COL] gi|147741186|gb|ABQ49484.1| protein translocase subunit secF / protein translocase subunit secD [Staphylococcus aureus subsp. aureus JH9] gi|149946637|gb|ABR52573.1| protein-export membrane protein SecD [Staphylococcus aureus subsp. aureus JH1] gi|150374551|dbj|BAF67811.1| preprotein translocase component SecDF [Staphylococcus aureus subsp. aureus str. Newman] gi|156722090|dbj|BAF78507.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus Mu3] gi|160368672|gb|ABX29643.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724082|gb|EES92811.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728868|gb|EES97597.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus aureus subsp. aureus TCH130] gi|257787682|gb|EEV26022.1| preprotein translocase, SecDF subunit [Staphylococcus aureus A9781] gi|257840141|gb|EEV64605.1| preprotein translocase subunit SecD/SecF [Staphylococcus aureus A9763] gi|257843919|gb|EEV68313.1| protein-export membrane protein SecDF [Staphylococcus aureus A9719] gi|257845683|gb|EEV69715.1| protein-export membrane protein SecDF [Staphylococcus aureus A9635] gi|257848254|gb|EEV72245.1| translocase subunit secF/protein translocase subunit secD [Staphylococcus aureus A9299] gi|257851079|gb|EEV75022.1| protein-export membrane protein SecDF [Staphylococcus aureus A8115] gi|257854455|gb|EEV77404.1| translocase subunit secF/protein translocase subunit secD [Staphylococcus aureus A6300] gi|257858072|gb|EEV80961.1| protein-export membrane protein SecDF [Staphylococcus aureus A6224] gi|257864070|gb|EEV86823.1| protein-export membrane protein SecDF [Staphylococcus aureus A5937] gi|259160924|gb|EEW45944.1| protein-export membrane protein SecDF [Staphylococcus aureus 930918-3] gi|269941122|emb|CBI49508.1| putative protein-export membrane protein [Staphylococcus aureus subsp. aureus TW20] gi|282590079|gb|EFB95161.1| secDF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus A10102] gi|282594534|gb|EFB99519.1| secDF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus A9765] gi|282764459|gb|EFC04585.1| secDF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus A8117] gi|285817319|gb|ADC37806.1| Protein-export membrane protein secD / Protein-export membrane protein secF [Staphylococcus aureus 04-02981] gi|294824692|gb|EFG41115.1| secDF [Staphylococcus aureus A9754] gi|300885971|gb|EFK81173.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus TCH70] gi|304340703|gb|EFM06635.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830023|emb|CBX34865.1| protein-export membrane protein SecD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129922|gb|EFT85912.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus CGS03] gi|315198662|gb|EFU28990.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus CGS01] gi|320140476|gb|EFW32330.1| protein-export membrane protein SecD [Staphylococcus aureus subsp. aureus MRSA131] gi|320144015|gb|EFW35784.1| protein-export membrane protein SecD [Staphylococcus aureus subsp. aureus MRSA177] gi|329314311|gb|AEB88724.1| Protein translocase subunit secF / protein translocase subunit secD [Staphylococcus aureus subsp. aureus T0131] gi|329727045|gb|EGG63501.1| export membrane protein SecD [Staphylococcus aureus subsp. aureus 21172] gi|329728389|gb|EGG64826.1| export membrane protein SecD [Staphylococcus aureus subsp. aureus 21189] gi|329733096|gb|EGG69433.1| export membrane protein SecD [Staphylococcus aureus subsp. aureus 21193] Length = 759 Score = 296 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G D + R++L + A Sbjct: 54 GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113 Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ G T K + Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V + G E + N A +D IN G ++ A Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L AGSLP+ L + +VGA G D++ K A G+ LI LFM+ Y GLV Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407 Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 + K + + L F++ +G+SIL Sbjct: 408 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L+ LN GIDF G ++ + + + V ++ + Q + Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 ++ + +K K + V P I +EL + ++ +I + Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N++ TT+ D++++SI +T+ RS+ T + + V+ + +G Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F + + G++ SSIFIA P+ + + K + Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 ++LGLDL+GG ++ +VD D LQ + L + + G+ ++ + N Sbjct: 30 KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A + ++ K + + +Q Sbjct: 90 RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + ++ ++I + + ++ + + + + Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267 GF + + L + + G + Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V + + M I + L +P A + G Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A I+ L I I + + +I+ V ++ F + Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + I + + + L L + L +I + + + + S Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 447 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 A I S + ++ V+L+ F F+ Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487 >gi|153816127|ref|ZP_01968795.1| hypothetical protein RUMTOR_02375 [Ruminococcus torques ATCC 27756] gi|145846612|gb|EDK23530.1| hypothetical protein RUMTOR_02375 [Ruminococcus torques ATCC 27756] Length = 789 Score = 296 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 200/698 (28%), Positives = 338/698 (48%), Gaps = 14/698 (2%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q D+ ++ ++ +++R++Q E+ + G +RI I++PG +D + + + Sbjct: 51 ITYQVKGDKPSQEDMDDTVYKMQRRVEQYST-EAQAYQEGDNRISIEIPGVEDANAILEE 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVR-FLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 LG + F K + + + G ++ + ++ + ++G + ATA Sbjct: 110 LGQPGSLYFIKHKDADGNENYTLGAEGYVLNKTIDELKANGSIVLTGSEVKSATAGAWDD 169 Query: 265 THK----PVVDISFDEMGARRFFEVTRD---NIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 VD++ + G F T + N +A+ DG +++ P +N I +G+A Sbjct: 170 QKTGKKMYGVDLTLNAEGTDAFAAATTEAYNNGNDTIAIYYDGELISVPSVNAIIENGQA 229 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QI+G+ + E A +A+ +R G L ++L + + VGA LG ++I A GL + L Sbjct: 230 QITGSASYEEADNIASTIRIGGLNLELEEISSKVVGAQLGEEAISTSLKAGAIGLAAVCL 289 Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 FMI +Y G + ++ + V L L LL+ TLTLP IAGI+LGIG+AVD+N+++ R Sbjct: 290 FMIFVYLLPGFASSIALVIYVGLILLLLNAFDITLTLPGIAGIILGIGMAVDANVIIFAR 349 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 ++EE SV +L GF +A S I D NIT LIA VL+ G G V+GFA T+ L I+ Sbjct: 350 VKEELSAGASVHSALRAGFHKAMSAILDGNITTLIAAAVLWLRGSGPVKGFAQTLALGIV 409 Query: 498 ISMFTAISIVRAMMIFIIRYKKM-KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 +SMFTA+ + R ++ + I + + +S Sbjct: 410 VSMFTALVVTRLLVYSFYAIGIRNPKVYGRVKEERKPIDFLGKKKVFFVVSIALCLSGFV 469 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + LNY +DF GG V ++ L V S + +N + Sbjct: 470 VMGINSARDVGALNYSLDFVGGTATTVTFDKEYTLEEVDSQMVPELEKITGDKNVQ-VQT 528 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 Q E + + + TE + +S E+ ++ VII+ Sbjct: 529 VKGTNQVVFKTQTLDLEKREAFESYMQNEFGVKEEIATENISSTVSSEMRMDAVIAVIIA 588 Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 I ML+YIW RFK FA A+ L+ D+ L F+A+ + T +A +LT++GYS+N Sbjct: 589 TIFMLLYIWFRFKDIRFATSAVVALLHDVLVVLAFYAIARVSVGNTFIACMLTIVGYSIN 648 Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 +V++DR+R+ MK + + +DL+++ I +TL RS+YTS+ F+ V + V G S I Sbjct: 649 ATIVIFDRIREEMKNSSRNTDLKDLVNRCITQTLTRSIYTSLTTFVMVAVLYVMGVSSIK 708 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 FA+P+ GIV A SS+ I + + KNA++ Sbjct: 709 EFALPLMAGIVCGAYSSVCITGALWYVM--KTGKNAKV 744 >gi|269203262|ref|YP_003282531.1| bifunctional preprotein translocase subunit SecD [Staphylococcus aureus subsp. aureus ED98] gi|87126489|gb|ABD21003.1| protein-export membrane protein SecF [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203006|gb|ABD30816.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus NCTC 8325] gi|262075552|gb|ACY11525.1| bifunctional preprotein translocase subunit SecD [Staphylococcus aureus subsp. aureus ED98] gi|302751465|gb|ADL65642.1| RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 739 Score = 296 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G D + R++L + A Sbjct: 34 GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 93 Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ G T K + Sbjct: 94 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 153 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V + G E + N A +D IN G ++ A Sbjct: 154 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 207 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L AGSLP+ L + +VGA G D++ K A G+ LI LFM+ Y GLV Sbjct: 208 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 267 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 268 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 327 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 328 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 387 Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 + K + + L F++ +G+SIL Sbjct: 388 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 447 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L+ LN GIDF G ++ + + + V ++ + Q + Sbjct: 448 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 507 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 ++ + +K K + V P I +EL + ++ +I + Sbjct: 508 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 561 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND Sbjct: 562 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 621 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N++ TT+ D++++SI +T+ RS+ T + + V+ + +G Sbjct: 622 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 681 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F + + G++ SSIFIA P+ + + K + Sbjct: 682 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 719 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 ++LGLDL+GG ++ +VD D LQ + L + + G+ ++ + N Sbjct: 10 KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 69 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A + ++ K + + +Q Sbjct: 70 RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 127 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + ++ ++I + + ++ + + + + Sbjct: 128 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 187 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267 GF + + L + + G + Sbjct: 188 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 247 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V + + M I + L +P A + G Sbjct: 248 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 307 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A I+ L I I + + +I+ V ++ F + Sbjct: 308 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 367 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + I + + + L L + L +I + + + + S Sbjct: 368 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 427 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 A I S + ++ V+L+ F F+ Sbjct: 428 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 467 >gi|291534324|emb|CBL07436.1| protein translocase subunit secF/protein translocase subunit secD [Roseburia intestinalis M50/1] gi|291538067|emb|CBL11178.1| protein translocase subunit secF/protein translocase subunit secD [Roseburia intestinalis XB6B4] Length = 719 Score = 296 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 207/698 (29%), Positives = 328/698 (46%), Gaps = 34/698 (4%) Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200 + Q + + + ++ +++R++ S Q RI +++PG D S Sbjct: 46 SGGVSITYQVMDENPSAEDMSDTIYKLQKRVESYSTEASVYQVG-DDRIAVEIPGVTDAS 104 Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 ++ + LG + F V ++G + A A Sbjct: 105 KILEELGNPGSLEFQLSD--------------------------GTVFMTGDQVADAQAA 138 Query: 261 FDPKTH---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 + + VV ++ + GA+ F EVT +N+GK L +V DG V++ P + +AI G A Sbjct: 139 TTTDQYGNKQYVVQLTLTDEGAKTFGEVTSENVGKALPIVYDGEVISYPTVQEAITGGTA 198 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QISG T E A LA +R GSL ++L+ +E VGA LGS +I A GLV++++ Sbjct: 199 QISGQSTFEEAQTLATQIRIGSLSLQLSELESSVVGAQLGSQAISSSLKAAAIGLVIVMV 258 Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 FMI++Y G+ A ++ + L +A L L TLTLP IAGI+L IG+AVD+N+++ R Sbjct: 259 FMIIVYAVPGVAAALALAIYTALVIATLYLFEITLTLPGIAGIILSIGMAVDANVIIFAR 318 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 IREE +SV ++ GF +A S I D NIT LIA +VL G G V+GFA T+ + I+ Sbjct: 319 IREEIASGKSVITAMKNGFHKAMSAILDGNITTLIAAIVLMGLGSGTVKGFAYTLMIGII 378 Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557 +SMFTA+ + R ++ I A V + Sbjct: 379 LSMFTALVVTRWILYSFYWLGMRDEKFYGRAKERRTINFLQKRYVFFAISIAVIAAGFIG 438 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617 + + LNYG+DF GG + + + +++ + N K Sbjct: 439 MGVHKASGQNSLNYGLDFMGGTSTTADFGKEYTIEDIENDIIPVVKEVTGDSNIQANKVE 498 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 ++++ ++ K + + + IS E+ + VIIS Sbjct: 499 GTTQITIKTRTLSKEERDDLNNKLADSFDVDESTITFQSISSTISGEMRADAVKAVIIST 558 Query: 678 IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 I MLIYIW RFK F AI LI D+ L +AL I T +A +LT+IGYSVND Sbjct: 559 ICMLIYIWFRFKDIRFGASAIIALIHDVLVVLTVYALMRISVGNTFIACMLTIIGYSVND 618 Query: 737 KVVVYDRMRKNM---KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V++DR+R+N+ T ++ ++S+ +TL RS+ TS+ FI V + + G + Sbjct: 619 TIVIFDRIRENLALKHGKQTREDLMEVANRSLTQTLSRSINTSITTFIMVFMLFLLGVAS 678 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I FA+P+ G++ A SSI IA + + KN Sbjct: 679 IREFALPLMAGMICGAYSSICIATELWYVMKVHLGKNK 716 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 32/242 (13%), Positives = 90/242 (37%), Gaps = 4/242 (1%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S + ++ G S + + +I + + Sbjct: 167 TSENVGKALPIVYDGEVISYPTVQEAITGGTAQISGQSTFEEAQTLATQIRIGSLSLQLS 226 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + +VG ++ + I + I + +++++ I + + A L + + Sbjct: 227 ELESSVVGAQLGSQAISSSLKAAAIGLVIVMVFMIIVYAVP-GVAAALALAIYTALVIAT 285 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF I L +A ++ IG +V+ V+++ R+R+ + + S + ++ + Sbjct: 286 LYLFEITLTLPGIAGIILSIGMAVDANVIIFARIREEIA---SGKSVITAMKNGFHKAMS 342 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + ++ I+ + + G + FA + GI+++ +++ + IL Y ++ Sbjct: 343 AILDGNITTLIAAIVLMGLGSGTVKGFAYTLMIGIILSMFTALVVTRWILYSFYWLGMRD 402 Query: 831 AR 832 + Sbjct: 403 EK 404 Score = 67.4 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 23/197 (11%), Positives = 60/197 (30%), Gaps = 7/197 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + VIL +++ L S++ + I LGLDL GG + +V Sbjct: 1 MKKSKAAVILVAILAAFAGLA-----YYASIILSSTGIGEEMSIPLGLDLSGGVSITYQV 55 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 +++ + +L+ ++ + ++I + I +++ Sbjct: 56 MDENPSAEDMSDTIYKLQKRVESYSTEASVYQVGDDRIAVEIPGVTDASKILEELGNPGS 115 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 D + + + ++ + + E + + + Sbjct: 116 LEFQL--SDGTVFMTGDQVADAQAATTTDQYGNKQYVVQLTLTDEGAKTFGEVTSENVGK 173 Query: 181 IQRLGSHRILIQLPGEQ 197 + +I P Q Sbjct: 174 ALPIVYDGEVISYPTVQ 190 >gi|237802876|ref|YP_002888070.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis B/Jali20/OT] gi|231274110|emb|CAX10904.1| protein translocase (secFG fusion protein) [Chlamydia trachomatis B/Jali20/OT] Length = 1400 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 165/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%) Query: 70 LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129 + SDEL + L K G+ M++ + I +S + T + Sbjct: 605 IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGVAGISSADILGTSKMSFHVVNEQFS 664 Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186 + L + + ++D+ AI + + + + + + Sbjct: 665 SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 + S Q + + + + + + Sbjct: 725 GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302 + + D + ++ + T++ + Sbjct: 785 GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + A +SGNF+ LAA L++G++ I+ E V +LGS Sbjct: 845 VISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQRV 904 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G ++V GLV++++ M V Y G++A ++ LN++L A + L A LTL +AGI+L Sbjct: 905 QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+LV ERIREE +S+ S++ G+ +A+S IFDSN+T ++A+ +L Sbjct: 965 AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542 G ++GFA+T+ + I SMFTA+ + + + ++ K+ + I Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080 Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597 R W V +L C +G+DFKGG L + ++ SV+R Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSHVCEYNPEQMCSVLRKR 1140 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647 + + + ++ + + V++ ++ ++ Sbjct: 1141 FQQIGLSSRDYRVRRADSSEKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200 Query: 648 ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 ++ + V ++S ++ + ++ + + +L+Y+ +RF+W +A AI Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAI 1260 Query: 698 TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L+ D+ T F L I+ +L A+ A++T++GYS+N+ ++++DR+R++ + Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 + LI+ ++ +TLGR+V T+ ++ + GG I +FA M GI++ SS Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379 Query: 813 IFIAAPILLFIYDWRAKNA 831 ++IA P+LLF+ +N+ Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398 >gi|237804798|ref|YP_002888952.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis B/TZ1A828/OT] gi|231273098|emb|CAX10011.1| protein translocase (secFG fusion protein) [Chlamydia trachomatis B/TZ1A828/OT] Length = 1400 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 165/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%) Query: 70 LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129 + SDEL + L K G+ M++ + I +S + T + Sbjct: 605 IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGVAGISSADILGTSKMSFHVVNEQFS 664 Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186 + L + + ++D+ AI + + + + + + Sbjct: 665 SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 + S Q + + + + + + Sbjct: 725 GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302 + + D + ++ + T++ + Sbjct: 785 GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + A +SGNF+ LAA L++G++ I+ E V +LGS Sbjct: 845 VISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQRV 904 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G ++V GLV++++ M V Y G++A ++ LN++L A + L A LTL +AGI+L Sbjct: 905 QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+LV ERIREE +S+ S++ G+ +A+S IFDSN+T ++A+ +L Sbjct: 965 AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542 G ++GFA+T+ + I SMFTA+ + + + ++ K+ + I Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080 Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597 R W V +L C +G+DFKGG L + ++ SV+R Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSHVCEYNPEQMCSVLRKR 1140 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647 + + + ++ + + V++ ++ ++ Sbjct: 1141 FQQIGLSSRDYRVRRADSSEKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200 Query: 648 ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 ++ + V ++S ++ + ++ + + +L+Y+ +RF+W +A AI Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAI 1260 Query: 698 TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L+ D+ T F L I+ +L A+ A++T++GYS+N+ ++++DR+R++ + Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 + LI+ ++ +TLGR+V T+ ++ + GG I +FA M GI++ SS Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379 Query: 813 IFIAAPILLFIYDWRAKNA 831 ++IA P+LLF+ +N+ Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398 >gi|302555757|ref|ZP_07308099.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces viridochromogenes DSM 40736] gi|302473375|gb|EFL36468.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces viridochromogenes DSM 40736] Length = 758 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 201/717 (28%), Positives = 334/717 (46%), Gaps = 34/717 (4%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +I + S A ++++E++R R+D +G++E T+ R GS RI+++LPG QDP Sbjct: 37 GTQIVLETRPTAPADAGSEATDRTLEVLRGRVDALGVAEPTLARSGSDRIVVELPGVQDP 96 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK------VEISGIH 253 ++ +LG TA+++FH+VL R + ++G Sbjct: 97 AKAADVLGRTAQLTFHQVLGTAGGSDDTAEPLPKRPRQRVLADESGRHLRLGAASLTGKE 156 Query: 254 LNGATANFDPKT---HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310 + A A FD + + VD + VL +I+ Sbjct: 157 VEEAAARFDQQGGAGWQVAVDFAGSGRDGWARLTGRAACQPVGDPARRVAIVLDDKIISS 216 Query: 311 AIPSGK-----------AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 QI+G+F + A LA ++ G+LP+ + VE+R VG LG++ Sbjct: 217 PQVDPAVGCGSGISGGSTQITGSFGADEARQLALLINGGALPVPVETVEQRTVGPTLGAE 276 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I A G L LF+IV+Y G +A ++ +++ A L+ LGATLTLP +AG Sbjct: 277 AITASARAAAVGTALTALFIIVVYRLMGALATVALACYGLISYAALAALGATLTLPGLAG 336 Query: 420 IVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 VL +G+AVD+N+LV ER REE R S SL GF A S I DSNIT LIA +L Sbjct: 337 FVLAVGMAVDANVLVFERAREEYAARLRPSPRSSLTAGFRGALSAIADSNITTLIAAGLL 396 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSRFFL 533 F G VRGF +T+G+ +L SM +A+ I R++ + +++++ I Sbjct: 397 FLLASGPVRGFGVTLGIGVLASMLSALVITRSLADLAVSRRRLRARPRLTGIAHTGALRD 456 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 ++ MR + +S + + + GL++G++F GG + PVD Sbjct: 457 RLTRAGLRPMRRPRRWLAVSATLLVLAASGIAVRGLDFGVEFTGGRLIEYTTGTPVDPDR 516 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 RS L Q + + V + + + + Sbjct: 517 ARSALADAGFPRAVVQASGDD-------RLTVRTDRLTDAQAATVTETVNSLTGHAGKLR 569 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 E +GP + +EL R ++ + ++ A L+Y+ RF+W F A+ L D+ +G FA Sbjct: 570 DETIGPSLGKELRRGALIALAVALGAQLVYLAARFRWLFGTSAVAALAHDVVILVGLFAW 629 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G + +AA+LT++GYSVND VVV+D +++ F + D+++ +TL R+V Sbjct: 630 LGKPIDGVFLAALLTVVGYSVNDSVVVFD-RLRDLSRRDREAPFAAVADRALLQTLPRTV 688 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 T A + +AV+GG + FA+ + G+VV SS+F A P+ + ++ A+ Sbjct: 689 NTGTGAAFILTALAVFGGDSLTDFAVALLIGLVVGTYSSMFTATPLAVVLHGRPARR 745 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 22/202 (10%) Query: 38 AMPKNRISLGLDLRGGSHLVLE---VDEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQ 93 + LGLDLRGG+ +VLE D + + LR + G+ + R Sbjct: 22 VALTVPVHLGLDLRGGTQIVLETRPTAPADAGSEATDRTLEVLRGRVDALGVAEPTLARS 81 Query: 94 IQNKITLSFADSRFKENIADKVTLFLQGVNSK--------------LNVDPKKNLLVTTT 139 ++I + + AD + Q + L P++ +L + Sbjct: 82 GSDRIVVELPGVQDPAKAADVLGRTAQLTFHQVLGTAGGSDDTAEPLPKRPRQRVLADES 141 Query: 140 EKEISIVLSQNNIDQVISHAI--EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 + + + + +V A +Q Q S + R Q Sbjct: 142 GRHLRLGAASLTGKEVEEAAARFDQQGGAGWQVAVDFAGSGRDGWARLTGRAACQP--VG 199 Query: 198 DPSRLRQLLGTTAKMSFHKVLP 219 DP+R ++ +S +V P Sbjct: 200 DPARRVAIVLDDKIISSPQVDP 221 >gi|283470913|emb|CAQ50124.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus ST398] Length = 759 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G D + R++L + A Sbjct: 54 GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113 Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ G T K + Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V + G E + N A +D IN G ++ A Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L AGSLP+ L + +VGA G D++ K A G+ LI LFM+ Y GLV Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407 Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 + K + + L F++ +G+SIL Sbjct: 408 LLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L+ LN GIDF G ++ + + + V ++ + Q + Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 ++ + +K K + V P I +EL + ++ +I + Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N++ TT+ D++++SI +T+ RS+ T + + V+ + +G Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F + + G++ SSIFIA P+ + + K + Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 ++LGLDL+GG ++ +VD D LQ + L + + G+ ++ + N Sbjct: 30 KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A + ++ K + + +Q Sbjct: 90 RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + ++ ++I + + ++ + + + + Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267 GF + + L + + G + Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V + + M I + L +P A + G Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A I+ L I I + + +I+ V ++ F + Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + I + + + L L + L +I + + + + S Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTS 447 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 A I S + ++ V+L+ F F+ Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487 >gi|210616297|ref|ZP_03291025.1| hypothetical protein CLONEX_03246 [Clostridium nexile DSM 1787] gi|210149852|gb|EEA80861.1| hypothetical protein CLONEX_03246 [Clostridium nexile DSM 1787] Length = 713 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 184/690 (26%), Positives = 324/690 (46%), Gaps = 31/690 (4%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q + ++ ++ +++R++Q E+T+ + GS RI I++PG D + + + Sbjct: 51 ITYQVKDENPTEEEMKDTIYKLQKRVEQYST-EATVYQEGSDRINIEIPGVSDANAILEE 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG + F E V + G + A+A Sbjct: 110 LGKPGSLEFQDA--------------------------EGNVVLEGTDIKTASAKTSQDN 143 Query: 266 H---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 + +V+++ + G +F E T NIGK +A+V D +++ P +N+AI G+A I G Sbjct: 144 MGNKQYIVELNLTDEGKTKFAEATEANIGKQIAIVYDDEIISNPKVNEAITGGQAYIDGM 203 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 + E A LA+ +R G L ++L + + VGA LG ++I A GL ++ +FM ++ Sbjct: 204 ESYEEADNLASTIRIGGLKLELEELSSKVVGAQLGEEAISTSLMAGAIGLAIVFIFMCIV 263 Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 Y GL + ++ + + + LL+ TLTLP IAGIVL IG+AVD+N+++ R++EE Sbjct: 264 YLLPGLASSIALVIYTGIVIVLLNAFNITLTLPGIAGIVLSIGMAVDANVIIFARVKEEM 323 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 +SV SL GF +A S I D N+T LIA +VL+ G G+V+GFA T+ L I++SMFT Sbjct: 324 AAGKSVKSSLKSGFQKAMSAIVDGNMTTLIAAIVLWVKGTGSVKGFAQTLALGIVVSMFT 383 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 A+ + R ++ + + + ++ + Sbjct: 384 ALVVTRIIIYSLYAVGLRSPKLYGSQKPRKERDFLKRRVLSFSISLVIIVAGFAMMGVNS 443 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622 Y ++F GG V ++ + + S + + +N +K Sbjct: 444 ANGKGAFKYSLEFMGGTSSTVTFDKDYSIEEIDSKIVPVVEKVTGDKNVQFQKVKDSNAV 503 Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 S+ K ++ E + +S E+ +V ++I+ + ML+ Sbjct: 504 VIKTISLDLEAREAFNKAMADNFGVDASTITAENISSTVSSEMRTDAVVALVIATVCMLL 563 Query: 683 YIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 YIW RFK F A+ L+ D+ + F+A+ T +A +LT++GYS+N +V++ Sbjct: 564 YIWFRFKDIRFGTSAVIALLNDVLFVIAFYAISRTSVGNTFIACILTIVGYSINATIVIF 623 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 DR+R+ +K + L+++ I +TL RS+YT+ FI + + V G S I FA+P+ Sbjct: 624 DRIREELKTKKKNEELSGLVNRCITDTLTRSIYTNATTFIMLAVLYVLGVSSIKEFAMPL 683 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G++ SSI I P+ + AK Sbjct: 684 MVGVLGGTFSSICITGPLWYVMKTRFAKKK 713 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 93/243 (38%), Gaps = 4/243 (1%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ D N + Y G + +I + Sbjct: 167 TEANIGKQIAIVYDDEIISNPKVNEAITGGQAYIDGMESYEEADNLASTIRIGGLKLELE 226 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++++VG ++ E I ++ I + I++ I + L + L++ + Sbjct: 227 ELSSKVVGAQLGEEAISTSLMAGAIGLAIVFIFMCIVY-LLPGLASSIALVIYTGIVIVL 285 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F I L +A ++ IG +V+ V+++ R+++ M S + + + + Sbjct: 286 LNAFNITLTLPGIAGIVLSIGMAVDANVIIFARVKEEMAA---GKSVKSSLKSGFQKAMS 342 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 V +M I+ + + V G + FA +A GIVV+ +++ + I+ +Y ++ Sbjct: 343 AIVDGNMTTLIAAIVLWVKGTGSVKGFAQTLALGIVVSMFTALVVTRIIIYSLYAVGLRS 402 Query: 831 ARI 833 ++ Sbjct: 403 PKL 405 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 46/142 (32%), Gaps = 5/142 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + ++ L + I LL + A I LGLDL GG + +V Sbjct: 1 MKKSRGVINLILTVVVICLL-----GFTSVVGFGATGAGAAKNIKLGLDLAGGVSITYQV 55 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 +++ ++ +L+ +++ ++ ++I + I +++ Sbjct: 56 KDENPTEEEMKDTIYKLQKRVEQYSTEATVYQEGSDRINIEIPGVSDANAILEELGKPGS 115 Query: 121 GVNSKLNVDPKKNLLVTTTEKE 142 + T Sbjct: 116 LEFQDAEGNVVLEGTDIKTASA 137 >gi|258450537|ref|ZP_05698599.1| translocase subunit secF/protein translocase subunit secD [Staphylococcus aureus A5948] gi|257861695|gb|EEV84494.1| translocase subunit secF/protein translocase subunit secD [Staphylococcus aureus A5948] Length = 759 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G D + R++L + A Sbjct: 54 GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113 Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ G T K + Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V + G E + N A +D IN G ++ A Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L AGSLP+ L + +VGA G D++ K A G+ LI LFM+ Y GLV Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 288 AIIALTTYIYLTLVAFNFISGILTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407 Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 + K + + L F++ +G+SIL Sbjct: 408 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L+ LN GIDF G ++ + + + V ++ + Q + Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 ++ + +K K + V P I +EL + ++ +I + Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N++ TT+ D++++SI +T+ RS+ T + + V+ + +G Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F + + G++ SSIFIA P+ + + K + Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 ++LGLDL+GG ++ +VD D LQ + L + + G+ ++ + N Sbjct: 30 KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A + ++ K + + +Q Sbjct: 90 RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + ++ ++I + + ++ + + + + Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267 GF + + L + + G + Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V + + M I + L +P A + G Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGILTLPGLAALVLGVGMAVD 327 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A I+ L I I + + +I+ V ++ F + Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + I + + + L L + L +I + + + + S Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 447 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 A I S + ++ V+L+ F F+ Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487 >gi|297623574|ref|YP_003705008.1| protein-export membrane protein SecD [Truepera radiovictrix DSM 17093] gi|297164754|gb|ADI14465.1| protein-export membrane protein SecD [Truepera radiovictrix DSM 17093] Length = 740 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 197/701 (28%), Positives = 345/701 (49%), Gaps = 39/701 (5%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE--QDPSRLR 203 V+ Q+ ++ + +I R+++ G++E +Q G RI+++LPG + R + Sbjct: 46 VVLQSTTPNPAPEDLQAARRVIENRVNEFGVAEPLVQTAGGDRIIVELPGLSADEQDRAQ 105 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 L+G A + F V P + + + + L Sbjct: 106 DLIGQQAVLEFRLVRPQSVGMPVEAMTEADLEPPAFTGEILSGAQTGYDELG-------- 157 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 +PVV+ A+ F + T N+G+ +A+VLDG V++AP INQ QISG F Sbjct: 158 ---RPVVNFQVRGADAQAFGQFTGANVGRSMAIVLDGNVVSAPTINQ-RIDASGQISGRF 213 Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383 T+E A LA +LR+GSLPI L + E R +G LG+DS+ GT A + G V +V+ +++ Y Sbjct: 214 TLEEASDLALVLRSGSLPIALQVQEIRAIGPTLGADSVAAGTRAGLIGAVAVVVTVLLFY 273 Query: 384 GK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 G +G V + ++L +L+ LGA LTLP +AG+VL IG AVD N++ ERI+EE Sbjct: 274 GPLFGSVLTVGVLFALVLIFGMLAGLGAALTLPGLAGLVLTIGAAVDGNVISFERIKEEL 333 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 R +S+ ++ GF+ + S I D+N+T LIA L+ + G VRGFAIT+ + I+ ++F Sbjct: 334 RAGKSLRLAMRSGFANSLSAIIDANVTTLIAAAALYQYTTGPVRGFAITLAIGIVAAVFV 393 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 +V ++ + R I F++ +S + + ++ Sbjct: 394 NTVVVPFLLDVLTL--------RFRRPRLPRGFYVTGIDFLKRAPLVTTLSGVLAAGALL 445 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622 + T GLN DF GG + + VR+ + + + Sbjct: 446 AVLTVGLNPSTDFTGGTSALLRTAEGTTVEEVRAAISEVAADIPGVDGSTATVQAVQDGT 505 Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPL-------------STIQNTEIVGPKISRELIRKG 669 G A ++ + + + ++VGP + +L + Sbjct: 506 LDGGAEQAAGQLYSVRIGLGQGEGDGATAFASDLAAALEAELLQADVVGPAVGADLRQGA 565 Query: 670 IVGVIISAIAMLIYIWIRF--KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727 I+ V+++ +L+Y+ RF W A+ ++ D+ +GF AL G EF++ +AA+L Sbjct: 566 ILAVLLAFGLILVYVGFRFWPNWIVAVASVIASAHDVVIVMGFLALTGAEFSIPVLAALL 625 Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787 ++GYS+ND +++ DR+R+N++ +S+R++++ S+N+TL R+V TS + VL + Sbjct: 626 FVVGYSLNDSIIIADRIRENLRKG-RGMSYREIVNASVNQTLSRTVLTSGTTLLPVLALL 684 Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +GGSV+ F++ + GI SSIFI AP++++ + + Sbjct: 685 FFGGSVLRDFSLTLLVGIAFGTYSSIFILAPMVVWFKNRQR 725 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 14/154 (9%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + IL +L + + + LGLDL+GG +VL+ Sbjct: 1 MTQRSFTGILVLGALLAAVLYLWQPWNTTGLP----------PLRLGLDLQGGLRVVLQS 50 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFAD--SRFKENIADKV-T 116 + LQ + + + + G+ ++ ++I + + ++ D + Sbjct: 51 TTPNPAPEDLQAARRVIENRVNEFGVAEPLVQTAGGDRIIVELPGLSADEQDRAQDLIGQ 110 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 + + T + Sbjct: 111 QAVLEFRLVRPQSVGMPVEAMTEADLEPPAFTGE 144 >gi|166154662|ref|YP_001654780.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis 434/Bu] gi|301335931|ref|ZP_07224175.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis L2tet1] gi|165930650|emb|CAP04147.1| protein translocase (secFG fusion protein) [Chlamydia trachomatis 434/Bu] Length = 1400 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 164/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%) Query: 70 LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129 + SDEL + L K G+ M++ + I +S + + T + Sbjct: 605 IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGAAGISSADILGTSKMSFHVVNEQFS 664 Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186 + L + + ++D+ AI + + + + + + Sbjct: 665 SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 + S Q + + + + + + Sbjct: 725 GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302 + + D + ++ + T++ + Sbjct: 785 GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + A +SGNF+ LA L++G++ I+ E V +LGS Sbjct: 845 VISDPVLNVPLKDHASVSGNFSYREVHRLATDLKSGAMSFIPEILSEEVVSPELGSSQRV 904 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G ++V GLV++++ M V Y G++A ++ LN++L A + L A LTL +AGI+L Sbjct: 905 QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+LV ERIREE +S+ S++ G+ +A+S IFDSN+T ++A+ +L Sbjct: 965 AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542 G ++GFA+T+ + I SMFTA+ + + + ++ K+ + I Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080 Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597 R W V +L C +G+DFKGG L + ++ SV+R Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSDVCEYNPEQMCSVLRKR 1140 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647 + + + ++ + + V++ ++ ++ Sbjct: 1141 FQQIGLSSRDYRVRRADSSGKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200 Query: 648 ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 ++ + V ++S ++ + ++ + + +L+Y+ +RF+W +A AI Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAI 1260 Query: 698 TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L+ D+ T F L I+ +L A+ A++T++GYS+N+ ++++DR+R++ + Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 + LI+ ++ +TLGR+V T+ ++ + GG I +FA M GI++ SS Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379 Query: 813 IFIAAPILLFIYDWRAKNA 831 ++IA P+LLF+ +N+ Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398 >gi|295406758|ref|ZP_06816563.1| secDF [Staphylococcus aureus A8819] gi|297245659|ref|ZP_06929524.1| secDF [Staphylococcus aureus A8796] gi|294968505|gb|EFG44529.1| secDF [Staphylococcus aureus A8819] gi|297177310|gb|EFH36562.1| secDF [Staphylococcus aureus A8796] Length = 759 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G D + R++L + A Sbjct: 54 GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113 Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ G T K + Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V + G E + N A +D IN G ++ A Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L AGSLP+ L + +VGA G D++ K A G+ LI LFM+ Y GLV Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVELIYLFMLGFYRLPGLV 287 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407 Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 + K + + L F++ +G+SIL Sbjct: 408 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L+ LN GIDF G ++ + + + V ++ + Q + Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 ++ + +K K + V P I +EL + ++ +I + Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N++ TT+ D++++SI +T+ RS+ T + + V+ + +G Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F + + G++ SSIFIA P+ + + K + Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 52/462 (11%), Positives = 121/462 (26%), Gaps = 18/462 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 ++LGLDL+GG ++ +VD D LQ + L + + G+ ++ + N Sbjct: 30 KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A + ++ K + + +Q Sbjct: 90 RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + ++ ++I + + ++ + + + + Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267 GF + + L + + G + Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V++ + M I + L +P A + G Sbjct: 268 IGVELIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A I+ L I I + + +I+ V ++ F + Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + I + + + L L + L +I + + + + S Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 447 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 A I S + ++ V+L+ F F+ Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487 >gi|240144501|ref|ZP_04743102.1| protein-export membrane protein SecD [Roseburia intestinalis L1-82] gi|257203488|gb|EEV01773.1| protein-export membrane protein SecD [Roseburia intestinalis L1-82] Length = 719 Score = 295 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 207/698 (29%), Positives = 326/698 (46%), Gaps = 34/698 (4%) Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200 + Q + + + ++ +++R++ S Q RI +++PG D S Sbjct: 46 SGGVSITYQVMDENPSAEDMSDTIYKLQKRVESYSTEASVYQVG-DDRIAVEIPGVTDAS 104 Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 ++ + LG + F V ++G + A A Sbjct: 105 KILEELGNPGSLEFQLSD--------------------------GTVFMTGDQVADAQAA 138 Query: 261 FDPKTH---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 + + VV ++ + GA+ F EVT +N+GK L +V DG V++ P + +AI G A Sbjct: 139 TTTDQYGNKQYVVQLTLTDEGAKTFGEVTSENVGKALPIVYDGEVISYPTVQEAITGGTA 198 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QISG T E A LA +R GSL ++L+ +E VGA LGS +I A GLV++++ Sbjct: 199 QISGQSTFEEAQTLATQIRIGSLSLQLSELESSVVGAQLGSQAISSSLKAAAIGLVIVMV 258 Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 FMI++Y G+ A ++ + L +A L L TLTLP IAGI+L IG+AVD+N+++ R Sbjct: 259 FMIIVYAVPGVAAALALAIYTALVIATLYLFEITLTLPGIAGIILSIGMAVDANVIIFAR 318 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 IREE +SV ++ GF +A S I D NIT LIA +VL G G V+GFA T+ + I+ Sbjct: 319 IREEIASGKSVITAMKNGFHKAMSAILDGNITTLIAAIVLMGLGSGTVKGFAYTLMIGII 378 Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557 +SMFTA+ + R ++ I A V + Sbjct: 379 LSMFTALVVTRWILYSFYWLGLRDEKFYGRAKERKTINFLQKRYVFFAISIAVIAAGFIG 438 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617 + + LNYG+DF GG + + + + + N K Sbjct: 439 MGVHKASGQNSLNYGLDFMGGTSTTADFGEEYTIEDIENKIIPVVKEVTGDSNIQANKVE 498 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 ++++ ++ K + + + IS E+ + VIIS Sbjct: 499 GTTQITIKTRTLSKEERDDLNNKLADSFDVDESTITFQSISSTISGEMRADAVKAVIIST 558 Query: 678 IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 I MLIYIW RFK F AI LI D+ L +AL I T +A +LT+IGYSVND Sbjct: 559 ICMLIYIWFRFKDIRFGASAIIALIHDVLVVLTVYALMRISVGNTFIACMLTIIGYSVND 618 Query: 737 KVVVYDRMRKNM---KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V++DR+R+N+ T ++ ++S+ +TL RS+ TS+ FI V + + G + Sbjct: 619 TIVIFDRIRENLALKHGKQTREDLMEVANRSLTQTLSRSINTSITTFIMVFMLFLLGVAS 678 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I FA+P+ G++ A SSI IA + + KN Sbjct: 679 IREFALPLMAGMICGAYSSICIATELWYVMKVHLGKNK 716 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 32/242 (13%), Positives = 90/242 (37%), Gaps = 4/242 (1%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S + ++ G S + + +I + + Sbjct: 167 TSENVGKALPIVYDGEVISYPTVQEAITGGTAQISGQSTFEEAQTLATQIRIGSLSLQLS 226 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + +VG ++ + I + I + +++++ I + + A L + + Sbjct: 227 ELESSVVGAQLGSQAISSSLKAAAIGLVIVMVFMIIVYAVP-GVAAALALAIYTALVIAT 285 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF I L +A ++ IG +V+ V+++ R+R+ + + S + ++ + Sbjct: 286 LYLFEITLTLPGIAGIILSIGMAVDANVIIFARIREEIA---SGKSVITAMKNGFHKAMS 342 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + ++ I+ + + G + FA + GI+++ +++ + IL Y ++ Sbjct: 343 AILDGNITTLIAAIVLMGLGSGTVKGFAYTLMIGIILSMFTALVVTRWILYSFYWLGLRD 402 Query: 831 AR 832 + Sbjct: 403 EK 404 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 23/197 (11%), Positives = 60/197 (30%), Gaps = 7/197 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + VIL +++ L S++ + I LGLDL GG + +V Sbjct: 1 MKKSKAAVILVAILVAFAGLA-----YYASIILSSTGIGEEMSIPLGLDLSGGVSITYQV 55 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 +++ + +L+ ++ + ++I + I +++ Sbjct: 56 MDENPSAEDMSDTIYKLQKRVESYSTEASVYQVGDDRIAVEIPGVTDASKILEELGNPGS 115 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 D + + + ++ + + E + + + Sbjct: 116 LEFQL--SDGTVFMTGDQVADAQAATTTDQYGNKQYVVQLTLTDEGAKTFGEVTSENVGK 173 Query: 181 IQRLGSHRILIQLPGEQ 197 + +I P Q Sbjct: 174 ALPIVYDGEVISYPTVQ 190 >gi|255507037|ref|ZP_05382676.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis D(s)2923] gi|289525493|emb|CBJ14970.1| protein translocase (secFG fusion protein) [Chlamydia trachomatis Sweden2] gi|296435047|gb|ADH17225.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis E/150] gi|296438767|gb|ADH20920.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis E/11023] Length = 1400 Score = 295 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 164/799 (20%), Positives = 335/799 (41%), Gaps = 42/799 (5%) Query: 70 LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129 + SDEL + L K G+ M++ + I +S + + T + Sbjct: 605 IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGAAGISSADILGTSKMSFHVVNEQFS 664 Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186 + L + + ++D+ AI + + + + + + Sbjct: 665 SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 + S Q + + + + + + Sbjct: 725 GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302 + + D + ++ + T++ + Sbjct: 785 GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + A +SGNF+ LAA L++G++ I+ E V +LGS Sbjct: 845 VISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQRV 904 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G ++V GLV++++ M V Y G++A ++ LN++L A + L A LT+ +AGI+L Sbjct: 905 QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTISGLAGIIL 964 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+LV ERIREE +S+ S++ G+ +A+S IFDSN+T ++A+ +L Sbjct: 965 AMGMAVDTNVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542 G ++GFA+T+ + I SMFTA+ + + + ++ K+ + I Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080 Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597 R W V +L C +G+DFKGG L + ++ SV+R Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSDVCEYNPEQMCSVLRKR 1140 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647 + + + ++ + + V++ ++ ++ Sbjct: 1141 FQQIGLSSRDYRVRRADSSGKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200 Query: 648 ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 ++ + V ++S ++ + ++ + + +L+Y+ +RF+W +A AI Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAI 1260 Query: 698 TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L+ D+ T F L I+ +L A+ A++T++GYS+N+ ++++DR+R++ + Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 + LI+ ++ +TLGR+V T+ ++ + GG I +FA M GI++ SS Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379 Query: 813 IFIAAPILLFIYDWRAKNA 831 ++IA P+LLF+ +N+ Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398 >gi|49483881|ref|YP_041105.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus MRSA252] gi|257425761|ref|ZP_05602185.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus 55/2053] gi|257428421|ref|ZP_05604819.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus 65-1322] gi|257431059|ref|ZP_05607438.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus 68-397] gi|257433745|ref|ZP_05610103.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus E1410] gi|282904217|ref|ZP_06312105.1| export membrane protein SecDF [Staphylococcus aureus subsp. aureus C160] gi|282906043|ref|ZP_06313898.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus Btn1260] gi|282908956|ref|ZP_06316774.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911273|ref|ZP_06319075.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus WBG10049] gi|282919411|ref|ZP_06327146.1| secF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus C427] gi|282924735|ref|ZP_06332403.1| secF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus C101] gi|283958397|ref|ZP_06375848.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus A017934/97] gi|293503515|ref|ZP_06667362.1| secF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus 58-424] gi|293510533|ref|ZP_06669239.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus M809] gi|293531074|ref|ZP_06671756.1| export membrane protein SecDF [Staphylococcus aureus subsp. aureus M1015] gi|295428212|ref|ZP_06820844.1| secF [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590820|ref|ZP_06949458.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus MN8] gi|49242010|emb|CAG40708.1| putative protein-export membrane protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271455|gb|EEV03601.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus 55/2053] gi|257275262|gb|EEV06749.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus 65-1322] gi|257278262|gb|EEV08904.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus 68-397] gi|257281838|gb|EEV11975.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus E1410] gi|282313570|gb|EFB43965.1| secF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus C101] gi|282317221|gb|EFB47595.1| secF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus C427] gi|282324968|gb|EFB55278.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus WBG10049] gi|282327220|gb|EFB57515.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331335|gb|EFB60849.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus Btn1260] gi|282595835|gb|EFC00799.1| export membrane protein SecDF [Staphylococcus aureus subsp. aureus C160] gi|283790546|gb|EFC29363.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus A017934/97] gi|290920342|gb|EFD97408.1| export membrane protein SecDF [Staphylococcus aureus subsp. aureus M1015] gi|291095181|gb|EFE25446.1| secF; bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus 58-424] gi|291466897|gb|EFF09417.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus M809] gi|295128570|gb|EFG58204.1| secF [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575706|gb|EFH94422.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus MN8] gi|312437896|gb|ADQ76967.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus TCH60] gi|315195540|gb|EFU25927.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus CGS00] Length = 759 Score = 295 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G D + R++L + A Sbjct: 54 GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113 Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ G T K + Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V + G E + N A +D IN G ++ A Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L AGSLP+ L + +VGA G D++ K A G+ LI LFM+ Y GLV Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407 Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 + K + + L F++ +G+SIL Sbjct: 408 LLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L+ LN GIDF G ++ + + + V ++ + Q + Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKGSGLKADQIQINGKDNK 527 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 ++ + +K K + V P I +EL + ++ +I + Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N++ TT+ D++++SI +T+ RS+ T + + V+ + +G Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F + + G++ SSIFIA P+ + + K + Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 ++LGLDL+GG ++ +VD D LQ + L + + G+ ++ + N Sbjct: 30 KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A + ++ K + + +Q Sbjct: 90 RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + ++ ++I + + ++ + + + + Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267 GF + + L + + G + Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V + + M I + L +P A + G Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A I+ L I I + + +I+ V ++ F + Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + I + + + L L + L +I + + + + S Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTS 447 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 A I S + ++ V+L+ F F+ Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487 >gi|166155537|ref|YP_001653792.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165931525|emb|CAP07101.1| protein translocase (secFG fusion protein) [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 1400 Score = 295 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 164/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%) Query: 70 LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129 + SDEL + L K G+ M++ + I +S + + T + Sbjct: 605 IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGAAGISSADILGTSKMSFHVVNEQFS 664 Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186 + L + + ++D+ AI + + + + + + Sbjct: 665 SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 + S Q + + + + + + Sbjct: 725 GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302 + + D + ++ + T++ + Sbjct: 785 GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + A +SGNF+ LA L++G++ I+ E V +LGS Sbjct: 845 VISDPVLNVPLKDHASVSGNFSYREVHRLATDLKSGAMSFIPEILSEEVVSPELGSSQRV 904 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G ++V GLV++++ M V Y G++A ++ LN++L A + L A LTL +AGI+L Sbjct: 905 QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+LV ERIREE +S+ S++ G+ +A+S IFDSN+T ++A+ +L Sbjct: 965 AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542 G ++GFA+T+ + I SMFTA+ + + + ++ K+ + I Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080 Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597 R W V +L C +G+DFKGG L + ++ SV+R Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSDVCEYNPEQMCSVLRKR 1140 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647 + + + ++ + + V++ ++ ++ Sbjct: 1141 FQQIGLSSRDYRVRRADSSGKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200 Query: 648 ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 ++ + V ++S ++ + ++ + + +L+Y+ +RF+W +A AI Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAI 1260 Query: 698 TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L+ D+ T F L I+ +L A+ A++T++GYS+N+ ++++DR+R++ + Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 + LI+ ++ +TLGR+V T+ ++ + GG I +FA M GI++ SS Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379 Query: 813 IFIAAPILLFIYDWRAKNA 831 ++IA P+LLF+ +N+ Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398 >gi|257436660|ref|ZP_05612704.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus M876] gi|282914442|ref|ZP_06322228.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus M899] gi|257284011|gb|EEV14134.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus aureus subsp. aureus M876] gi|282321623|gb|EFB51948.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus M899] Length = 759 Score = 295 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 180/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ A++ + + + R++ +G+SE IQ +RI +QL G D + R++L + A Sbjct: 54 GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113 Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ G T K + Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V + G E + N A +D IN G ++ A Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L AGSLP+ L + +VGA G D++ K A G+ LI LFM+ Y GLV Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+A+D+NI++ ERI++E R +++ Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMALDANIIMYERIKDELRIGRTIK 347 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407 Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 + K + + L F++ +G+SIL Sbjct: 408 LLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L+ LN GIDF G ++ + + + V ++ + Q + Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKGSGLKADQIQINGKDNK 527 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 ++ + +K K + V P I +EL + ++ +I + Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N++ TT+ D++++SI +T+ RS+ T + + V+ + +G Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F + + G++ SSIFIA P+ + + K + Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96 ++LGLDL+GG ++ +VD D LQ + L + + G+ ++ + N Sbjct: 30 KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 +I + A + ++ K + + +Q Sbjct: 90 RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 + ++ ++I + + ++ + + + + Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207 Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267 GF + + L + + G + Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V + + M I + L +P A + G Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMALD 327 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A I+ L I I + + +I+ V ++ F + Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + I + + + L L + L +I + + + + S Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTS 447 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 A I S + ++ V+L+ F F+ Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487 >gi|194017127|ref|ZP_03055739.1| RND superfamily resistance-nodulation-cell division:proton [Bacillus pumilus ATCC 7061] gi|194010995|gb|EDW20565.1| RND superfamily resistance-nodulation-cell division:proton [Bacillus pumilus ATCC 7061] Length = 742 Score = 295 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 194/697 (27%), Positives = 344/697 (49%), Gaps = 30/697 (4%) Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 D++ + + ++E + +R + +G+SE I G++RI +QL G +D +R R++L T A++ Sbjct: 54 DKITNSVLVSTVEALNRRANVLGVSEPNISIEGNNRIRVQLAGVKDQNRAREILSTEAQL 113 Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272 SF G + + V++ G V Sbjct: 114 SFRDTNDKELLNGADLVENSAKQTFSQTNEPIVTVKLKDAKKFGDVTR--------KVAA 165 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 + + + + K + + ++AP +NQ I S QI G FT++ A LA Sbjct: 166 MAPNNQLVIWLDYHKGDSFKKEVSKSNHKYVSAPNVNQEINSSDVQIEGKFTVQEAKDLA 225 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392 ++L AG+LP+KL +V A G ++ + A + G+ I LFM++ Y GL+A Sbjct: 226 SILNAGALPVKLTEKYSTSVSAQFGEQALDETVFAGIVGIAFIFLFMLLYYRLPGLIAVI 285 Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452 ++ + +TL + +GA +TLP IA ++LG+G+AVD+NI+ ERI+EE + +SV + Sbjct: 286 TLSAYIYITLQVFDWMGAVMTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAF 345 Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 G R+++TIFD+N+T++IA VLFFFG +V+GFA + LSIL S TA+ + R ++ Sbjct: 346 RSGNRRSFATIFDANLTSIIAGGVLFFFGTSSVKGFATMLILSILTSFITAVFLSRFLLG 405 Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCI-------------AIQFMRARFWGVGISILFSIC 559 ++ + + R I + F+ R + S +I Sbjct: 406 LLVESRYLDRRKGWFGVRQKDIMNIHETTETTEPKTPFDKWDFVSKRKGFMIFSATITIA 465 Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 I +L LN GIDF G ++ + ++ + V + + L + S ++N Sbjct: 466 GIIVLSIFKLNAGIDFTSGTRIDIQSDHKLSTEQVEQDFKKLDLETDSVVLSGQKENQAA 525 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 + V + K T N V P + +EL R + VII++I Sbjct: 526 ARFVGVPNKEKIAEVKDYFK------DKYGTEPNVSTVSPTVGKELARNALYAVIIASIG 579 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 +++Y+ +RF++ A+ AI +L+ D + FF++ +E ++T +AA+LT+IGYS+ND +V Sbjct: 580 IILYVSVRFEYKMAIAAIISLLYDAFFIVAFFSITRLEVDVTFIAAILTVIGYSINDTIV 639 Query: 740 VYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR+R+ MK +++ S+ +T RSV T + + V+ + ++G + I +F Sbjct: 640 TFDRVREQMKKRKPKTIEDLSYIVNLSLQQTFTRSVNTVLTVLVVVIALLIFGSASITNF 699 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833 +I + G++ SS++IAA I L K A+I Sbjct: 700 SIALLVGLLTGVYSSLYIAAQIWLMWKGREMKKPAKI 736 Score = 57.4 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 18/133 (13%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ IL + + L+ L + + ++LGLDL+GG ++ +V Sbjct: 1 MKKGR---ILAFFLVVL-LIGTGVGLLTKPVA---------KDMTLGLDLQGGFEVLYDV 47 Query: 61 ----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115 ED N L + L G+ ++ + N+I + A + + + + Sbjct: 48 HPVKKEDKITNSVLVSTVEALNRRANVLGVSEPNISIEGNNRIRVQLAGVKDQNRAREIL 107 Query: 116 TLFLQGVNSKLNV 128 + Q N Sbjct: 108 STEAQLSFRDTND 120 >gi|329769770|ref|ZP_08261171.1| hypothetical protein HMPREF0433_00935 [Gemella sanguinis M325] gi|328838132|gb|EGF87750.1| hypothetical protein HMPREF0433_00935 [Gemella sanguinis M325] Length = 764 Score = 295 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 191/700 (27%), Positives = 330/700 (47%), Gaps = 31/700 (4%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 + A++ + + I +RI+ +G+SE I +RI ++L G +D R++L T A Sbjct: 60 EGQNIDEAAVKATADTISRRINILGVSEPVITVEAGNRIRVELAGVKDQETARKVLSTQA 119 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 ++ N G + K+++ G + K Sbjct: 120 NLTIRDTDDNILLDGSDLQENGASQGYDQNSKPDVKLKLKDAEKFGKITSDISKKTGGQN 179 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 + + KP ++AP +NQ I S QI+G+F+++ A Sbjct: 180 LMVIWMDFSDGDSFKAEAAKEKPK-------YISAPQVNQTINSNDVQITGDFSVKEAKE 232 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 +AA+L +G+LP+KL + +VGA G+D++Y+ A L +I FM+++Y G VA Sbjct: 233 MAALLNSGALPVKLTEIYSNSVGAQFGADALYQTVLAGAIALGIICAFMLLVYRLPGFVA 292 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + V LT+ +++ LTLP IA ++LG+G+AVD+NI++ ERI+EE R + Sbjct: 293 SVMMVAYVYLTVVFFNMISGVLTLPGIAALILGVGMAVDANIIMYERIKEEVRAGYPLQK 352 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 + G ++ TIFDS T +IA VVLF FG +V+GFA + LSIL+S TA+ R + Sbjct: 353 AYLDGAKQSLWTIFDSQFTTVIAAVVLFIFGTSSVKGFATMLLLSILVSFITAVFGTRLL 412 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFS 557 + ++R + I D + F + +SI Sbjct: 413 LGLLVRSNFFNNHPGYFGVSKKSIHDTKFGINSLNLPTKFEWLSFTKHMKKFFALSIAIM 472 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617 I L + LN GIDF G ++ + AN + V+ ++ SL + + +K Sbjct: 473 IAGSISLGMNKLNLGIDFSSGTRIDIAANTELTTEQVKQDIGSLNVKEEKIVLSQDKKQA 532 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 V + + KK + +V P I +EL++ I ++ ++ Sbjct: 533 TVYSKDSFAQDKSIEIKEYFAKKYEKDAN-------LSVVSPVIGKELVKNAIYALLYAS 585 Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737 I ++IY+ RF+W L ++ L+ D+ + +L +E ++T +AAVLT++GYS+ND Sbjct: 586 IGIIIYVAFRFEWRMGLTSVIALLHDVAVIIFMASLLRLEIDITFIAAVLTIVGYSINDT 645 Query: 738 VVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 +V +DR+R++M+ T ++D S+ +TL RS+ T + I+V+ M + G S I Sbjct: 646 IVTFDRIREHMRHEKLIKTKEQIYKIVDVSLRQTLTRSINTVLTVIITVVVMLLVGSSSI 705 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833 SF + + G+V SS+FIAA + + K +I Sbjct: 706 YSFNVALLIGLVFGLYSSLFIAAQLWAVLKVRELNKKGKI 745 Score = 64.3 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 36/414 (8%), Positives = 111/414 (26%), Gaps = 26/414 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + L L ++ + + +++LGLDL+GG ++ +V+ Sbjct: 10 KFSRILAFLSLVVIVLTSIGLTAQ-------------SNAKKVNLGLDLQGGFEVLYQVE 56 Query: 62 E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI-QNKITLSFADSRFKENIADKVT 116 + ++ +D + + G+ + N+I + A + +E ++ Sbjct: 57 PLREGQNIDEAAVKATADTISRRINILGVSEPVITVEAGNRIRVELAGVKDQETARKVLS 116 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + + N + ++ + + + D Sbjct: 117 TQANLTIRDTDDNILLDGSDLQENGAS--QGYDQNSKPDVKLKLKDAEKFGKITSDISKK 174 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + + + ++ + + +++ + F V+ ++ Sbjct: 175 TGGQNLMVIWMDFSDGDSFKAEAAKEKPKYISAPQVNQTINSNDVQIT-GDFSVKEAKEM 233 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG-----ARRFFEVTRDNIG 291 V+++ I+ N A F V +G + + Sbjct: 234 AALLNSGALPVKLTEIYSNSVGAQFGADALYQTVLAGAIALGIICAFMLLVYRLPGFVAS 293 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + + V+ +I+ + M ++ ++ Sbjct: 294 VMMVAYVYLTVVFFNMISGVLTLPGIAALILGVGMAVDANIIMYERIKEEVRAGYPLQKA 353 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 + +VLF+ G + + V A+ Sbjct: 354 YLDGAKQSLWTIFDSQFTTVIAAVVLFIFGTSSVKGFATMLLLSILVSFITAVF 407 >gi|197303669|ref|ZP_03168706.1| hypothetical protein RUMLAC_02396 [Ruminococcus lactaris ATCC 29176] gi|197297189|gb|EDY31752.1| hypothetical protein RUMLAC_02396 [Ruminococcus lactaris ATCC 29176] Length = 796 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 193/696 (27%), Positives = 343/696 (49%), Gaps = 21/696 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q D ++ ++ +++R++Q E+ ++G +RI I++PG D + + + Sbjct: 51 ITYQVKGDNPSQKDMDDTVYKLQKRVEQYST-EAQAYQVGDNRISIEIPGVNDANAILEE 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGV-RFLRDSDGNQYLVEDKVEISGIHLNG----ATAN 260 LG + F K + ++ + G ++ + ++ D + ++G + ++ Sbjct: 110 LGQPGSLYFIKHKNSAGEENYTLGSSGYVLNKTIDELKESDSIVLTGSEVKTASAGQISD 169 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV---VLDGRVLTAPVINQAIPSGKA 317 + + VD+ GA +F E T++ + DG +++ P +N I +GKA Sbjct: 170 STTGSKEYGVDLELTTEGAEKFKEATQEAVNNSNDTIAIYYDGELISVPKVNTVIENGKA 229 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QI+G+ T E A +A+ +R G L ++L + VGA LG +++ A GL L+ + Sbjct: 230 QITGSMTYEEADNIASTIRIGGLNVELEELSSEVVGAQLGQEAVSTSLIAGAIGLALVCI 289 Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 FM +Y GL A ++ L +TL LL+ TLTLP IAGI+LGIG+AVD+N+++ R Sbjct: 290 FMCWVYLLPGLAASMALLLYTEITLLLLNAFDITLTLPGIAGIILGIGMAVDANVIIFAR 349 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 ++EE +SV +L GF +A S I D N+T LIA VL+ G G+V+GFA T+ L I+ Sbjct: 350 VKEELTAGKSVHAALKSGFHKAMSAIIDGNVTTLIAAGVLWLRGSGSVKGFAQTLALGIV 409 Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557 ISMFTA+ I R ++ + F+ + +SI+ Sbjct: 410 ISMFTALVITRLIIFSFYGAGIHNVKAYGRHLKERKP-----FDFLGKKKIFFVLSIILC 464 Query: 558 ICSICLLFTHG------LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611 +C ++ + +NY +DF GG V ++ L + N+ +N Sbjct: 465 LCGPVMMGVNHARGIGAMNYSLDFVGGTSTNVTFDKEYTLDEIDKNMIPSMEEITGDKNI 524 Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + ++ T+ + + TE + +S E+ ++ Sbjct: 525 QVQTVKGTNQVVFKTQTLDLTKREALASYLNENYGVETKDIATENISSTVSSEMRVDAVI 584 Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 VII+ I ML+YIW RFK FA A+ L+ D+ LGF+ + + T +A +LT++ Sbjct: 585 AVIIATICMLLYIWFRFKDIRFATSAVIALVHDVLVVLGFYVIARVSVGNTFIAVMLTIV 644 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 GYS+N +V++DR+R+ +K + + +DL+++ I +TL R++YT++ FI V+ + + G Sbjct: 645 GYSINGTIVIFDRIREELKTKSKAEDLKDLVNRCITQTLTRTLYTNITTFIMVVVLYILG 704 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 S I FA P+ GIV A +S+ I + + Sbjct: 705 VSSIKEFAAPLMVGIVCGAYTSVCITGALWYVMKTK 740 >gi|241889506|ref|ZP_04776805.1| bifunctional preprotein translocase subunit SecD/SecF [Gemella haemolysans ATCC 10379] gi|241863813|gb|EER68196.1| bifunctional preprotein translocase subunit SecD/SecF [Gemella haemolysans ATCC 10379] Length = 764 Score = 294 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 187/700 (26%), Positives = 328/700 (46%), Gaps = 31/700 (4%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 + A++ + + I +RI+ +G+SE I +RI ++L G +D R++L T A Sbjct: 60 EGQTIDEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLSTQA 119 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 ++ + G + +++ G + K + Sbjct: 120 NLTIRDIEDKVLLDGSDLEENGASQGFDQNNKPDVNLKLKDADKFGNITSEISKRGQGQN 179 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 + KP ++AP + Q I S QI+GNFT++ A Sbjct: 180 LMVIWMDFNEGDSFKAEAAKEKPK-------YVSAPQVAQTINSKDVQITGNFTVKEAKE 232 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 +AA+L +G+LP+KL + +VGA G+D++++ A L +I LFM+ +Y G VA Sbjct: 233 MAALLNSGALPVKLTEIYSNSVGAQFGADALHQTVYAGAVALAIICLFMLFIYRVPGFVA 292 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + V +T+ +++ LTLP IA ++LG+G+AVD+NI++ ERI+EE R + Sbjct: 293 SVMMVAYVYITVVFFNMISGVLTLPGIAALILGVGMAVDANIIMYERIKEEVRAGYPLKK 352 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 + G ++ TIFDS T +IA VVLF FG +V+GFA + LSIL+S TA+ R + Sbjct: 353 AYLDGAKQSLWTIFDSQFTTVIAAVVLFIFGTSSVKGFATMLLLSILVSFITAVFGTRLL 412 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFS 557 + ++ I + + F + +SI Sbjct: 413 LSLLVNSNIFNKHPGYFGVSKKSIHETKFGINSLNLSTKFEWLSFTKHMKKFFALSIAIM 472 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617 I L + LN GIDF G ++ V AN + + ++ +L +L++ D +K Sbjct: 473 IAGSISLGMNKLNLGIDFSSGTRIDVAANTELSVEKIQEDLNNLKVKDEKIVLSPDKKQA 532 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + S + ++ K N +V P I +EL + + +I ++ Sbjct: 533 TI-------HSKESFEQDKSIEIKEYFAKKYQKDANLSVVSPVIGKELAKNALFALIYAS 585 Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737 I ++IY+ RF+W L ++ L+ D+ + +L +E ++T +AAVLT++GYS+ND Sbjct: 586 IGIIIYVAFRFEWRMGLTSVIALLHDVCIIIFIASLLRLEIDITFIAAVLTIVGYSINDT 645 Query: 738 VVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 +V +DR+R++M+ + L+D S+ +TL RS+ T + I+V+ M + G S I Sbjct: 646 IVTFDRIREHMRHEKVLTSKEQIYKLVDVSLRQTLTRSINTVLTVIITVVVMLLLGSSSI 705 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833 SF + + G++ SS+FIAA + + K +I Sbjct: 706 YSFNVALLIGLIFGLYSSLFIAAQLWAVLKVRELNKKGKI 745 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 48/126 (38%), Gaps = 14/126 (11%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65 + + + + +++ +S + +++LGLDL+GG ++ +V+ Sbjct: 14 IIAFLSLVVIILTSIGLTSKSNAE---------KVNLGLDLQGGFEVLYQVEPLKEGQTI 64 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 ++ +D + + G+ + + N+I + A + +E+ ++ Sbjct: 65 DEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLSTQANLTIR 124 Query: 125 KLNVDP 130 + Sbjct: 125 DIEDKV 130 >gi|255348819|ref|ZP_05380826.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis 70] gi|255503359|ref|ZP_05381749.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis 70s] Length = 1400 Score = 294 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 165/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%) Query: 70 LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129 + SDEL + L K G+ M++ + I +S + + T + Sbjct: 605 IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGAAGISSADILGTSKMSFHVVNEQFS 664 Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186 + L + + ++D+ AI + + + + + + Sbjct: 665 SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 + S Q + + + + + + Sbjct: 725 GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302 + + D + ++ + T++ + Sbjct: 785 GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + A +SGNF+ LAA L++G++ I+ E V +LGS Sbjct: 845 VISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQRV 904 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G ++V GLV++++ M V Y G++A ++ LN++L A + L A LTL +AGI+L Sbjct: 905 QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+LV ERIREE +S+ S++ G+ +A+S IFDSN+T ++A+ +L Sbjct: 965 AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542 G ++GFA+T+ + I SMFTA+ + + + ++ K+ + I Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080 Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597 R W V +L C +G+DFKGG L + ++ SV+R Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSDVCEYNPEQMCSVLRKR 1140 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647 + + + ++ + + V++ ++ ++ Sbjct: 1141 FQQIGLSSRDYRVRRADSSEKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200 Query: 648 ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 ++ + V ++S ++ + ++ + + +L Y+ +RF+W +A AI Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILFYVSLRFEWRYAFSAI 1260 Query: 698 TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L+ D+ T F L I+ +L A+ A++T++GYS+N+ ++++DR+R++ + Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 + LI+ ++ +TLGR+V T+ ++ + GG I +FA M GI++ SS Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379 Query: 813 IFIAAPILLFIYDWRAKNA 831 ++IA P+LLF+ +N+ Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398 >gi|23099482|ref|NP_692948.1| bifunctional preprotein translocase subunit SecD/SecF [Oceanobacillus iheyensis HTE831] gi|22777711|dbj|BAC13983.1| protein-export membrane protein [Oceanobacillus iheyensis HTE831] Length = 748 Score = 294 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 189/698 (27%), Positives = 339/698 (48%), Gaps = 32/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +V +E +++ + R++++GISE+ I G +RI +QL G + + R++L T+A Sbjct: 54 SQEVSQSLLEGTVQTLNDRVNRLGISEAVIDIEGDNRIRVQLAGVDNQAEAREMLSTSAN 113 Query: 212 MSFHKVLPNNSKKGFMF--GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++F V N G G + T + Sbjct: 114 LTFRDVNDNLYLDGTDLVEGSAKQDFDPNTNAPIVTLQLKDASKFGDVTTEISEMQDSRL 173 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V + G E + ++AP ++ I S I+GNFT+E+A Sbjct: 174 VIWMDYQEGDSFEEEAAKAEPK----------YVSAPNVDGPINSSNVMINGNFTVESAQ 223 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A ++ +GSLP+ + + +VGA G ++ + A + G+ LI+LFMI Y G++ Sbjct: 224 QMADIINSGSLPVHMTEIFSTSVGAQFGEQALNETVFAGIVGVGLIILFMIGFYRFTGII 283 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + V L + + +L LTLP IA ++LG+G+AVD+N++ ERI+EE R +SV Sbjct: 284 AAINLAVYVYLVILVFEMLNGVLTLPGIAALILGVGMAVDANVITFERIKEELRLGKSVK 343 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + G S ++ TI D+NIT LIA VVLF FG +V+GFA + +SI++S TA+ R Sbjct: 344 AAFKSGNSNSFITILDANITTLIAAVVLFIFGTSSVKGFATMLIISIILSFLTAVLGTRV 403 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDC-----------IAIQFMRARFWGVGISILFSI 558 ++ ++ +K+ I D +I F++ R + + I Sbjct: 404 LLGLWVQSGFLKNRKAWLGVNKTQIQDIAKAEEEPKILGRSINFVKHRKKFFITTSIIVI 463 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 + +N G+DF G ++ V+A++ + V L S Sbjct: 464 VGAIAIGIFRINPGVDFTSGSRVEVVADQSLTAEEVEDQFAELGHEVNSVNLSGENNQIA 523 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V D V + + + + +V P + +EL++ I V I++I Sbjct: 524 VARFDTVLDESGVDEVQQHFNELYGQT------PSISVVSPIVGQELVKNAIYAVSIASI 577 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 M+ Y+ IRF+++F + A+ L+ D+ L F++ IEFN+T VAA+LT++GYS+N+ + Sbjct: 578 FMIAYVTIRFEFFFGITAVVALLHDVFLMLVLFSVTQIEFNVTIVAAILTIVGYSINNTI 637 Query: 739 VVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V++DR+R+N++ +F+ ++++SI ++ R++ TS+ I+VL V G + I Sbjct: 638 VIFDRIRENIRREKRVKTFKVLARVVNRSIVQSFTRTMNTSVTTIIAVLAFLVLGATSIW 697 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 SFA+ + G++ SS+F A+ + + KN + Sbjct: 698 SFALALLIGLLAGTYSSLFFASQLWMVWRGRTVKNKPV 735 Score = 64.7 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 51/434 (11%), Positives = 112/434 (25%), Gaps = 44/434 (10%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60 + + ++ G++ + + ++LGLDL+GG ++ EV Sbjct: 3 KRGRIVAFFLVVLVLAGVIGTTFTNITKD-------------VNLGLDLQGGFEVLYEVE 49 Query: 61 ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116 + L+ L + + GI + + N+I + A + + ++ Sbjct: 50 PVDQSQEVSQSLLEGTVQTLNDRVNRLGISEAVIDIEGDNRIRVQLAGVDNQAEAREMLS 109 Query: 117 LFLQGVNSKLNV----------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166 +N + + L + + E S Sbjct: 110 TSANLTFRDVNDNLYLDGTDLVEGSAKQDFDPNTNAPIVTLQLKDASKFGDVTTEISEMQ 169 Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226 + + + E + + + + +F Sbjct: 170 DSRLVIWMDYQEGDSFEEEAAKAEPKYVSAPNVDGPINSSNVMINGNFTVESAQQMADII 229 Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 G + ++ V G N V + M F Sbjct: 230 NSGSLPVHMTEIFSTSV-------GAQFGEQALNETVFAGIVGVGLIILFMIGFYRFTGI 282 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 I + V L V +P A I G A ++ L + ++ Sbjct: 283 IAAINLAVYVYLVILVFEMLNGVLTLPGIAALILGVGMAVDANVITFERIKEELRLGKSV 342 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 G +I + V++ +F + F +++ +LS Sbjct: 343 KAAFKSGNSNSFITILDANITTLIAAVVLFIF---------GTSSVKGFATMLIISIILS 393 Query: 407 LLGATLTLPSIAGI 420 L A L + G+ Sbjct: 394 FLTAVLGTRVLLGL 407 >gi|317502038|ref|ZP_07960220.1| protein-export membrane protein SecD [Lachnospiraceae bacterium 8_1_57FAA] gi|331090446|ref|ZP_08339327.1| hypothetical protein HMPREF1025_02910 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896512|gb|EFV18601.1| protein-export membrane protein SecD [Lachnospiraceae bacterium 8_1_57FAA] gi|330401193|gb|EGG80786.1| hypothetical protein HMPREF1025_02910 [Lachnospiraceae bacterium 3_1_46FAA] Length = 786 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 200/698 (28%), Positives = 338/698 (48%), Gaps = 14/698 (2%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q D+ ++ ++ +++R++Q E+ + G +RI I++PG +D + + + Sbjct: 51 ITYQVKGDKPSQEDMDDTVYKMQRRVEQYST-EAQAYQEGDNRISIEIPGVEDANAILEE 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVR-FLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 LG + F K + + + G ++ + ++ + ++G + ATA Sbjct: 110 LGQPGSLYFIKHKDADGNENYTLGAEGYVLNKTIDELKANGSIVLTGSEVKSATAGAWDD 169 Query: 265 THK----PVVDISFDEMGARRFFEVTRD---NIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 VD++ + G F T + N +A+ DG +++ P +N I +G+A Sbjct: 170 QKTGKKMYGVDLTLNAEGTDAFAAATTEAYNNGNDTIAIYYDGELISVPSVNAIIENGQA 229 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QI+G+ + E A +A+ +R G L ++L + + VGA LG ++I A GL + L Sbjct: 230 QITGSASYEEADNIASTIRIGGLNLELEEISSKVVGAQLGEEAISTSLKAGAIGLAAVCL 289 Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 FMI +Y G + ++ + V L L LL+ TLTLP IAGI+LGIG+AVD+N+++ R Sbjct: 290 FMIFVYLLPGFASSIALVIYVGLILLLLNAFDITLTLPGIAGIILGIGMAVDANVIIFAR 349 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 ++EE SV +L GF +A S I D NIT LIA VL+ G G V+GFA T+ L I+ Sbjct: 350 VKEELSAGASVHSALRAGFHKAMSAILDGNITTLIAAAVLWLRGSGPVKGFAQTLALGIV 409 Query: 498 ISMFTAISIVRAMMIFIIRYKKM-KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 +SMFTA+ + R ++ + I + + +S Sbjct: 410 VSMFTALVVTRLLVYSFYAIGIRNPKVYGRVKEERKPIDFLGKKKVFFVVSIALCLSGFV 469 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + LNY +DF GG V ++ L V S + +N + Sbjct: 470 VMGINSARDVGALNYSLDFVGGTATTVTFDKEYTLEEVDSQMVPELEKITGDKNVQ-VQT 528 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 Q E + + + TE + +S E+ ++ VII+ Sbjct: 529 VKGTNQVVFKTQTLDLEKREAFESYMQNEFGVKEEIATENISSTVSSEMRMDAVIAVIIA 588 Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 I ML+YIW RFK FA A+ L+ D+ L F+A+ + T +A +LT++GYS+N Sbjct: 589 TIFMLLYIWFRFKDIRFATSAVVALLHDVLVVLAFYAIARVSVGNTFIACMLTIVGYSIN 648 Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 +V++DR+R+ MK + + +DL+++ I +TL RS+YTS+ F+ V + V G S I Sbjct: 649 ATIVIFDRIREEMKNSSRNTDLKDLVNRCITQTLTRSIYTSLTTFVMVAVLYVMGVSSIK 708 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 FA+P+ GIV A SS+ I + + KNA++ Sbjct: 709 EFALPLMAGIVCGAYSSVCITGALWYVM--KTGKNAKV 744 >gi|15605175|ref|NP_219961.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis D/UW-3/CX] gi|255311259|ref|ZP_05353829.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis 6276] gi|255317561|ref|ZP_05358807.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis 6276s] gi|3328880|gb|AAC68047.1| SecD/SecF fusion protein [Chlamydia trachomatis D/UW-3/CX] gi|296435975|gb|ADH18149.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis G/9768] gi|296436902|gb|ADH19072.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis G/11222] gi|296437836|gb|ADH19997.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis G/11074] gi|297140336|gb|ADH97094.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia trachomatis G/9301] gi|297748579|gb|ADI51125.1| SecD [Chlamydia trachomatis D-EC] gi|297749459|gb|ADI52137.1| SecD [Chlamydia trachomatis D-LC] Length = 1400 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 165/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%) Query: 70 LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129 + SDEL + L K G+ M++ + I +S + + T + Sbjct: 605 IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGAAGISSADILGTSKMSFHVVNEQFS 664 Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186 + L + + ++D+ AI + + + + + + Sbjct: 665 SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 + S Q + + + + + + Sbjct: 725 GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302 + + D + ++ + T++ + Sbjct: 785 GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + A +SGNF+ LAA L++G++ I+ E V +LGS Sbjct: 845 VISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQRV 904 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G ++V GLV++++ M V Y G++A ++ LN++L A + L A LTL +AGI+L Sbjct: 905 QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+LV ERIREE +S+ S++ G+ +A+S IFDSN+T ++A+ +L Sbjct: 965 AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542 G ++GFA+T+ + I SMFTA+ + + + ++ K+ + I Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080 Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597 R W V +L C +G+DFKGG L + ++ SV+R Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSDVCEYNPEQMCSVLRKR 1140 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647 + + + ++ + + V++ ++ ++ Sbjct: 1141 FQQIGLSSRDYRVRRADSSEKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200 Query: 648 ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 ++ + V ++S ++ + ++ + + +L Y+ +RF+W +A AI Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILFYVSLRFEWRYAFSAI 1260 Query: 698 TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L+ D+ T F L I+ +L A+ A++T++GYS+N+ ++++DR+R++ + Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 + LI+ ++ +TLGR+V T+ ++ + GG I +FA M GI++ SS Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379 Query: 813 IFIAAPILLFIYDWRAKNA 831 ++IA P+LLF+ +N+ Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398 >gi|291545645|emb|CBL18753.1| protein translocase subunit secF/protein translocase subunit secD [Ruminococcus sp. SR1/5] Length = 808 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 216/720 (30%), Positives = 352/720 (48%), Gaps = 24/720 (3%) Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187 KN+ + Q + ++ ++QR+ Q E+ + GS+ Sbjct: 33 TGSAKNINTGLDLAGGVSITYQAKDSNPSKEDMSDTVYKMQQRVSQYST-EAQAYQEGSN 91 Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG---VRFLRDSDGNQYLVE 244 RI I++PG D + + + LG + F + + F G ++ Sbjct: 92 RITIEIPGVSDANAILEELGKPGSLYFIDQTDADGNQNFTTGNSESGYVLARSIEDIQKA 151 Query: 245 DKVEISGIHLNGATANFDPKT----HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + G + A + K V ++ + G +F E T+ N+GK +A+V D Sbjct: 152 GSVVLEGTDVADAEGGAYQDSSTSSQKYAVSLTLTKNGKTKFAEATKANVGKQIAIVYDD 211 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +VL+AP +N+ I GKAQI+G + E A LA+ +R GSL ++L + V A LG ++ Sbjct: 212 QVLSAPNVNEEISGGKAQITGMASTEEAQNLASYIRIGSLSLELTELRSSVVAAQLGEEA 271 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I A GLV+++L MI+ Y GLVA ++ L L L L+ TLTLP IAGI Sbjct: 272 IATSVKAGAIGLVIVMLIMIIAYRIPGLVASVALVLYTTLMLITLNAFDITLTLPGIAGI 331 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 +LGIG+AVD+N+++ RIREE SV ++ GF +A+S IFD NIT LIA VL + Sbjct: 332 ILGIGMAVDANVIIYARIREEIAAGLSVHAAIKSGFGKAFSAIFDGNITTLIAACVLMWL 391 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G G+V+GFA T+ + I+ISMFTA+ I R ++ + I + + + + + Sbjct: 392 GSGSVKGFAYTLAMGIVISMFTALVISRLVINAVYA------IGVRDPKFYGIAKERKVV 445 Query: 541 QFMRARFWGVGISILFSICSICLLFTHG-------LNYGIDFKGGIQLGVLANRPVDLSV 593 F+ R +SI+ +C + H +NY ++F GG V N+ +D+ Sbjct: 446 DFVGKRKIFFAVSIILILCGPVGMLVHSNVIGDKAMNYSLEFSGGTSTNVTFNKEMDIKE 505 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S + + +N K S+ + K +++ Sbjct: 506 IDSEVTPVVEAVTGDKNVQPTKVQGTNQVVIKTRSLDLKEREALNKALEENFDVDTSLIT 565 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712 +E + +S E+ R IV VI++AI ML+YIW RFK FA A+ L+ D+ L F+ Sbjct: 566 SENISATVSNEMRRDAIVAVIVAAIFMLLYIWFRFKDIRFASSAVLALLHDVLVVLAFYV 625 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS--FRDLIDKSINETLG 770 + T +A +LT++GYS+N +V++DR+R+NM+ +++++ S+ ETL Sbjct: 626 ISRTSVGNTFIACMLTIVGYSINATIVIFDRIRENMRGRKKVEDEKLKEIVNTSVTETLT 685 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 RS+YTS+ F+ V + V G S I FA P+ GI+ A SS+ I + + +R Sbjct: 686 RSIYTSLTTFVMVAILYVMGVSSIKEFAAPLMVGIIGGAYSSVCITGALWYTMKTFRKNR 745 Score = 104 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 89/233 (38%), Gaps = 4/233 (1%) Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 ++ D + + G + + +I + T + +V Sbjct: 206 AIVYDDQVLSAPNVNEEISGGKAQITGMASTEEAQNLASYIRIGSLSLELTELRSSVVAA 265 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ E I + I + +++ + I ++ L A L+L T L F I Sbjct: 266 QLGEEAIATSVKAGAIGLVIVMLIMIIAYRIP-GLVASVALVLYTTLMLITLNAFDITLT 324 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +A ++ IG +V+ V++Y R+R+ + +S I + ++ Sbjct: 325 LPGIAGIILGIGMAVDANVIIYARIREEIAA---GLSVHAAIKSGFGKAFSAIFDGNITT 381 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 I+ + G + FA +A GIV++ +++ I+ ++ +Y ++ + Sbjct: 382 LIAACVLMWLGSGSVKGFAYTLAMGIVISMFTALVISRLVINAVYAIGVRDPK 434 >gi|319892690|ref|YP_004149565.1| Protein-export membrane protein SecD [Staphylococcus pseudintermedius HKU10-03] gi|317162386|gb|ADV05929.1| Protein-export membrane protein SecD [Staphylococcus pseudintermedius HKU10-03] gi|323464272|gb|ADX76425.1| preprotein translocase subunit SecD/SecF [Staphylococcus pseudintermedius ED99] Length = 759 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 177/698 (25%), Positives = 327/698 (46%), Gaps = 30/698 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ + A++ + + + +R++ +G+SE IQ +RI +QL G QD ++ R++L + A Sbjct: 54 GEKIDNTAVQSTAKTLERRVNVLGVSEPKIQVEDQNRIRVQLAGVQDQNQARKILSSQAN 113 Query: 212 MSFHKVLPNN--SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 ++ + K + G T K + Sbjct: 114 LTIRDADDKVLLTGKDLVQGSAKQEFKQNTNQPAVTFKLKDSDKFKKVTEEISKKQENVM 173 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V E G E T+++ IN G I A Sbjct: 174 VVWLDFEKGDSYEKEKTKED------PKFISAASVNQPINSTNVEISGGFQGEKGISEAK 227 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L +GSLP++L + +VGA G D++ K A + G+ +I LFM++ Y G+V Sbjct: 228 QIADLLNSGSLPVELKEIYSTSVGAQFGQDALDKTINASMIGIGIIFLFMLLFYRLPGIV 287 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LT+ + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 288 AVITLTTYIYLTMVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDEIRIGRTLK 347 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TI D+N+T ++A VLFFFG +V+GFA + L+IL+S TA+ + R Sbjct: 348 QAYKKANKSSFITILDANLTTVLAAAVLFFFGESSVKGFATMLLLAILMSFVTAVFLTRV 407 Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILF 556 ++ ++ K + I + FM+ +S + Sbjct: 408 LLSLVVHSNVFKKKLWWFGVKQSQIHDINKGYDVHELSTPYDKVDFMKWAKPLFALSGVV 467 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L LN GIDF G ++ + +N+ + + V +ES+ + Sbjct: 468 IVAGVIILAIFKLNLGIDFTSGTRVDLQSNQKLTQAQVEKTMESIDLKPNQLSIGGSNNE 527 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 + + +V + +K + + + V P I +EL + ++ VII+ Sbjct: 528 NASMQFKRDLNKDEVAKVTDTLKSQYGKE------PSVNTVSPVIGQELAKNAMLAVIIA 581 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I M+IYI +RF+W + +I +L+ D + F+LF +E ++T +AAVLT+IGYS+ND Sbjct: 582 SIGMIIYISLRFEWRMGIASIISLLHDAFMIIAVFSLFRLEVDITFIAAVLTIIGYSIND 641 Query: 737 KVVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+ + +++ SI +TL RS+ T + I V+ + V G S Sbjct: 642 TIVTFDRVREMLSKIKVITKEDQIDYIVNSSIRQTLTRSINTVLTVVIVVIALLVLGASS 701 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F++ + G++ SSI IA P+ + + + Sbjct: 702 IFNFSLALLIGLLSGVYSSIIIAVPLWGMLKKRELRKS 739 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 33/258 (12%), Positives = 105/258 (40%), Gaps = 5/258 (1%) Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635 + + + + + ++ + I S N + +Q +++ + + Sbjct: 170 ENVMVVWLDFEKGDSYEKEKTKEDPKFISAASVNQPINSTNVEISGGFQGEKGISEAKQI 229 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 + + V L I + VG + ++ + K I +I + +++ + ++ + Sbjct: 230 ADLLNSGSLPVELKEIYS-TSVGAQFGQDALDKTINASMIGIGIIFLFMLLFYRLP-GIV 287 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 A+ TL I T+ F L +AA++ +G +V+ +++Y+R++ +++ Sbjct: 288 AVITLTTYIYLTMVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDEIRI---GR 344 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 + + K+ + + ++ ++ + +G S + FA + I+++ +++F+ Sbjct: 345 TLKQAYKKANKSSFITILDANLTTVLAAAVLFFFGESSVKGFATMLLLAILMSFVTAVFL 404 Query: 816 AAPILLFIYDWRAKNARI 833 +L + ++ Sbjct: 405 TRVLLSLVVHSNVFKKKL 422 >gi|308174466|ref|YP_003921171.1| protein-export membrane protein [Bacillus amyloliquefaciens DSM 7] gi|307607330|emb|CBI43701.1| protein-export membrane protein [Bacillus amyloliquefaciens DSM 7] gi|328554386|gb|AEB24878.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus amyloliquefaciens TA208] gi|328912791|gb|AEB64387.1| protein-export membrane protein [Bacillus amyloliquefaciens LL3] Length = 739 Score = 293 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 193/696 (27%), Positives = 337/696 (48%), Gaps = 28/696 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + +++ + +R + +G+SE IQ G++RI +QL G + +R R++L T A+ Sbjct: 53 GDKITKDVLVSTVQALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILSTEAQ 112 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 +SF G + + + I + L A + V Sbjct: 113 LSFRDTNDKELLN----GSDLVENGAKQTFDPTTNEPIVSVKLKDADKFGEVTKK---VK 165 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + + K + ++AP ++Q + + I G FT++ A L Sbjct: 166 KMAPNNQLVIWLDYQKGDSFKKEVGKKHPKYVSAPNVSQELNTKDVTIEGQFTVQKAKDL 225 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AG+LP+KL +VGA G +++ A + G+ L+ LFM++ Y GL+A Sbjct: 226 ANILNAGALPVKLTEKYSTSVGAQFGQQALHDTVEAGIIGIALVFLFMLLYYRLPGLIAV 285 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + V +TL + + A LTLP IA ++LG+G+AVD+NI+ ERI+EE + +SV + Sbjct: 286 ITLSVYVYITLQVFDWMQAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+++TIFD+NIT +IA VVLF FG +V+GFA + LSIL S TA+ + R ++ Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ + + + I D F R + S +I Sbjct: 406 SLLVESRWLDRKKGWFGVKKKHIMDIQKTDENTEPHTAFQKWDFTSKRKYFFIFSSAVTI 465 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I +L LN GIDF G ++ V +N + V + +SL + + E + Sbjct: 466 AGIIILLIFKLNLGIDFASGARIDVQSNHALTAQQVEKDFDSLGMDPENVVLSGKENHVA 525 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + K K N V P + +EL R + V I++I Sbjct: 526 AARFVGEPSKEKIAEIKTYFKDKYGAE------PNVSTVSPTVGKELARNALYAVAIASI 579 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF++ A+ AI +L+ D + FF++ +E ++T +AAVLT+IGYS+ND + Sbjct: 580 GIIIYVSIRFEYRMAVAAIVSLLYDAFFIVAFFSITRLEVDVTFIAAVLTIIGYSINDTI 639 Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R+ MK +++ S+ +T RS+ T + I V+ + + G S I + Sbjct: 640 VTFDRIREQMKKRKPKSFADLEHIVNLSLQQTFTRSINTVLTVVIVVVVLLILGSSSITN 699 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 F++ + G++ SS++IAA + L K+ + Sbjct: 700 FSVALLIGLLTGVYSSLYIAAQMWLVWKGKEFKSKK 735 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 48/408 (11%), Positives = 112/408 (27%), Gaps = 22/408 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ L + + L+ + + I+LGLDLRGG ++ +V Sbjct: 1 MKKGR----LIAFFLIVLLIGTGLGYFTKPAA---------KNITLGLDLRGGFEVLYDV 47 Query: 61 DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115 D L L G+ +++ + N+I + A + + + Sbjct: 48 QPVKKGDKITKDVLVSTVQALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107 Query: 116 TLFLQGVNSKLNVD---PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172 + Q N +L+ ++ ++ + + A + + + Sbjct: 108 STEAQLSFRDTNDKELLNGSDLVENGAKQTFDPTTNEPIVSVKLKDADKFGEVTKKVKKM 167 Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232 + G++ P + + + + + Sbjct: 168 APNNQLVIWLDYQKGDSFKKEVGKKHPKYVSAPNVSQELNTKDVTIEGQFTVQKAKDLAN 227 Query: 233 LRDSDGNQY-LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + ++ L E G + + + + F M I Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHDTVEAGIIGIALVFLFMLLYYRLPGLIAVIT 287 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + V + +V +P A I G A I+ L + ++ Sbjct: 288 LSVYVYITLQVFDWMQAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399 G +I+ + V++ +F + + SI + I Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFI 395 >gi|291459936|ref|ZP_06599326.1| protein-export membrane protein SECD [Oribacterium sp. oral taxon 078 str. F0262] gi|291417277|gb|EFE90996.1| protein-export membrane protein SECD [Oribacterium sp. oral taxon 078 str. F0262] Length = 736 Score = 293 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 185/598 (30%), Positives = 305/598 (51%), Gaps = 16/598 (2%) Query: 244 EDKVEISGIHLN--GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V ++G + + ++ ++F E GA++F + T DN+GKPL +V +G+ Sbjct: 124 SGNVLLTGDDVKTASPAMTNQNNNKEYIIRLAFKEEGAKKFAQATSDNVGKPLYIVYNGK 183 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 ++AP + +AI G+A I+G + E A +A+ +R G+LP+KL + +GA LG ++I Sbjct: 184 TISAPTVQEAITGGEASITGMDSYEKASTIASTIRIGALPLKLTELRSNVIGATLGQEAI 243 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 A GL L++LFM++ Y GL A F++ + V L + LL TLTLP IAGI+ Sbjct: 244 TSSLKAAAIGLSLVMLFMLIFYLLPGLSASFALLMYVGLEMVLLQAFEVTLTLPGIAGII 303 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IG+AVD+N+++ RI+EE + +V ++ G+S+A S I D NIT LIA VL+ G Sbjct: 304 LSIGMAVDANVIIFTRIKEELGQGNTVEKAIKAGYSKALSAILDGNITTLIAAAVLYLRG 363 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541 G V+GFA T+ + I++S+ TA+ + R M ++ + + + I Sbjct: 364 SGTVKGFATTLAIGIVVSLITALFVTRGFM------WCFLTLGASSPKLYGIKKPAKLID 417 Query: 542 FMRARFWGVGISILFSICSICLLFTHG------LNYGIDFKGGIQLGVLANRPVDLSVVR 595 F+ R +S + + + + NY +DFKGG + N + L + Sbjct: 418 FVGMRKVAYLLSAVLILSGFVAMGMNKRSIGNLFNYDLDFKGGSSTNITLNEDLPLDQID 477 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLSTIQNT 654 L + + + T + K I E T Sbjct: 478 KELVPVFTAVTGGDSSTQASKVAGTNEVIIKTRTLTTDERTELYKDIAEKFSVDEQKITT 537 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713 E + +S E+ R ++I+ + MLIYIW+RFK FA ++ L D+ T+ F+A+ Sbjct: 538 ENISGAVSLEMKRDAAWALLIAILFMLIYIWVRFKDLKFASASVAALAHDVLVTITFYAV 597 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 F T +A VLT++GYS+N +V++DR+R+N+ + RD ++ +++ETL RS+ Sbjct: 598 FRWAVGSTFIACVLTIVGYSINATIVIFDRIRENLNEPGGRKNLRDSVNMAVSETLTRSI 657 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 TS+ FI+VL + ++G S I F +P+ GIV A SS+ IA P+ K Sbjct: 658 NTSLTTFITVLMLFLFGVSSIRDFTMPLMVGIVSGAWSSVMIAGPLWYDFVQLAEKRR 715 Score = 52.4 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 41/385 (10%), Positives = 101/385 (26%), Gaps = 23/385 (5%) Query: 43 RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102 I LGLDL GG + + DE + + +L+ + ++ N+I + Sbjct: 40 TIRLGLDLNGGVSITYQTDEPNPTAEQMSDTRYKLQLKAQSYSTEAQVYQEGANRINIDI 99 Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162 + I ++ + + ++ +++L+ +++ Q Sbjct: 100 PGATDANEILKELG---------------EPGSLQFKDQSGNVLLTGDDVKTASPAMTNQ 144 Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222 + + + + + + ++ + Sbjct: 145 NNNKEYIIRLAFKEEGAKKFAQATSDNVGKPLYIVYNGKTISAPTVQEAITGGEASITGM 204 Query: 223 KKGFMFGVRFLRDSDGN--QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280 G L E + + G L K + + M Sbjct: 205 DSYEKASTIASTIRIGALPLKLTELRSNVIGATLGQEAITSSLKAAAIGLSLVMLFMLIF 264 Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340 + + V L+ +L A + +P I A ++ L Sbjct: 265 YLLPGLSASFALLMYVGLEMVLLQAFEVTLTLPGIAGIILSIGMAVDANVIIFTRIKEEL 324 Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 + + G +I G + + + G V F+ L + + Sbjct: 325 GQGNTVEKAIKAGYSKALSAILDGNITTLIAAAV------LYLRGSGTVKGFATTLAIGI 378 Query: 401 TLALLSLLGATLTLPSIAGIVLGIG 425 ++L++ L T + Sbjct: 379 VVSLITALFVTRGFMWCFLTLGASS 403 >gi|315652214|ref|ZP_07905209.1| RND superfamily resistance-nodulation-cell division:proton (H+) antiporter [Eubacterium saburreum DSM 3986] gi|315485520|gb|EFU75907.1| RND superfamily resistance-nodulation-cell division:proton (H+) antiporter [Eubacterium saburreum DSM 3986] Length = 822 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 206/798 (25%), Positives = 350/798 (43%), Gaps = 51/798 (6%) Query: 50 LRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE 109 L+GG H + + + S + E + S AD Sbjct: 30 LQGGKH----SNVTKVTHTAEETTITSAESSVSGESTSNGESTKASEN---SSADKSKAN 82 Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI--------------VLSQNNIDQV 155 N + + Q K + + + + Q Sbjct: 83 NESSQSGESSQAEPGKEPESADEKKDENGKSSKFGMGKIKLGLDLAGGVSITYQTVQQNP 142 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 + ++ ++QR+ E+ + R G +RI I +PG D + + LG + F Sbjct: 143 SDEDMADTIYKLQQRVQNYST-EAEVYREGGNRINIDIPGVSDANAILDELGKPGSLLF- 200 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT--HKPVVDIS 273 + + ++G + A A + VV ++ Sbjct: 201 -------------------------VDPQGQTVLTGDQVATAKAGIIDNNGKSEYVVSLT 235 Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333 F + G++ F E T IG+ +A++ D V + P + AI G AQI+G + + A LA+ Sbjct: 236 FTDEGSKAFAEATAKLIGQRIAIIYDNVVYSNPTVQTAITGGNAQITGMTSYDEAKNLAS 295 Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393 +R GSL ++L + VGA LG +I A V G V++ FMI + G + + Sbjct: 296 TIRIGSLSLELEELRSNVVGAKLGQTAISTSMKAAVVGFVVLAAFMIGAFLLPGAASVIA 355 Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453 + L +IL + LLS TLTLP IAGI+L IG+AVD+N+++ RI+EE +SV+ S++ Sbjct: 356 LALYIILEILLLSAFEITLTLPGIAGIILSIGMAVDANVIIFTRIKEEIALGKSVYESIN 415 Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513 GF +A S I D N+T LIA VL+ G G V+GFA T+ L I++SMFTA+ + + ++ Sbjct: 416 SGFKKALSAIIDGNVTTLIAAAVLYVRGSGTVKGFAQTLALGIILSMFTALFVTKFILKA 475 Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 I + + V I + NYG+ Sbjct: 476 FYNVGLDDVKFYGKKPDRESINFVGMRKITLSVAAVVLIIGVIFAGVNKSQIGGFFNYGL 535 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 DFKGG V N+ L + + + +K S++ Sbjct: 536 DFKGGTSTNVTFNKDYSLEEISKEIVPVVESVTGEAGTQTQKVQGTNQVIIKTRSLSLDE 595 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692 ++ K + + E + +S E+ + +V +++ I MLIYIWIRF+ + F Sbjct: 596 REKLNKALADKFGVDAEKITAESISGAVSSEMKKDAVVATVLATILMLIYIWIRFRDFSF 655 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 A G+I L+ D+ + +A+F T +A +LT++GYS+N +V++DR+R+N + + Sbjct: 656 AAGSILALLHDVFIVISCYAIFRWSVGSTFIACILTILGYSINATIVIFDRIRENKAILS 715 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 S + +LI+KS+ ETL RS+Y+S+ FI++ + + G I FA+P+ GIV SS Sbjct: 716 KSTAKEELINKSVTETLTRSIYSSLTTFITIFILFLMGVPSIREFALPIMVGIVAGTYSS 775 Query: 813 IFIAAPILLFIYDWRAKN 830 +F+++ + + K Sbjct: 776 VFLSSVFWYLLSNKFDKK 793 >gi|284801917|ref|YP_003413782.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes 08-5578] gi|284995059|ref|YP_003416827.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes 08-5923] gi|284057479|gb|ADB68420.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes 08-5578] gi|284060526|gb|ADB71465.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes 08-5923] Length = 754 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 185/701 (26%), Positives = 340/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +R++ +G++E +IQ G++RI +QL G D + R++L T Sbjct: 51 ADGKGTVSKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + D L+AP ++ + + K +ISG+FT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLAELLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G++A ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553 R ++ +++ + + + I F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 + I I +L LN GIDF G + V AN+ + + ++ +L+++ + Sbjct: 461 AVIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGS 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + + V P + +EL + G + Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 ++++ +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T D ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAEL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + + VG + ++ +++ I+ II IA+ I++ ++ + Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 86.3 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 78/730 (10%), Positives = 193/730 (26%), Gaps = 34/730 (4%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L L + G+ S++ + N+I + A + ++ Q Sbjct: 58 SKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S N I + + ++ + + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + ++DP+ L ++ + + + + L +S Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAELLNSGALPVK 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +++ S G V F M A I L Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNE-RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 P + + I + + F+ + Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAVIVIVGIVILSIFKLN 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G A T+ + + AI + ++F K + Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGSGSKTAVVSYKGTLSQND 537 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + + + ++ ++ + + V + ++ Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S L I I F E + + + + + + + Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704 E + +++ L + + + + + F +G ++++ I Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717 Query: 705 TKTLGFFALF 714 + + +F Sbjct: 718 FMAMQLWYVF 727 >gi|296269604|ref|YP_003652236.1| protein-export membrane protein SecD [Thermobispora bispora DSM 43833] gi|296092391|gb|ADG88343.1| protein-export membrane protein SecD [Thermobispora bispora DSM 43833] Length = 748 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 204/686 (29%), Positives = 335/686 (48%), Gaps = 26/686 (3%) Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 A +++++I+R+R D +G+ E T+ R G RI+++LPG DP + ++G TA+++FH V Sbjct: 55 EATDRALDILRRRADALGVVEPTLVRSGERRIIVELPGVLDPRKAASVIGKTAQLTFHPV 114 Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 L D G + + + A V I F E Sbjct: 115 ----LGAADENDKDALADESGQKLRLGPAAISGDAVTDAAARTNPQMGPGWFVTIDFKES 170 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP-----------SGKAQISGNFTIE 326 G + VL +I+ G QI+G+FT+E Sbjct: 171 GPWKKLTGEAACNPVGDPKRRIAIVLDNEIISSPQVDESVGCNVGITGGSTQITGSFTME 230 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +++ GSLP+ L +VE+R VG LG+++I A V G++L LF++V+Y Sbjct: 231 EAQNLAVLIKGGSLPVPLELVEQRTVGPTLGAEAIEASAKAAVVGVILTTLFIVVIYRVV 290 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR--K 444 GL+A ++ +++ A L +GATLTLP +AG VL IG+AVD+N+LV ER REE R Sbjct: 291 GLLAAIALASYALISYAGLVAIGATLTLPGLAGFVLAIGMAVDANVLVFERAREEYRASP 350 Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504 + + + +GF A+S I DSNIT L+A +LF+ G V+GF +T+ + +L S+ +A+ Sbjct: 351 ERGLKWASQLGFKNAWSAIADSNITTLLAAALLFWLASGPVKGFGVTLSIGVLASLISAM 410 Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564 I R ++ IIR +++ + + R M R +GI+ + I +I Sbjct: 411 LITRVLVDLIIRKVPVRASGLGSIGRVRTWLTTRNPNLMARRRIWLGIAAVLLITAIAGP 470 Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624 G N+G++F GG + +PVD R + Q Sbjct: 471 VARGFNFGVEFTGGRIMEFATQQPVDAEAARQVVSDAGFPSAVVQRSQD--------AIS 522 Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 + +++ + + T + E++GP + EL R I+ + ++ A L Y+ Sbjct: 523 VRTGQISADDVARIEEALDKRFGDVTKERDELIGPSLGDELRRNAIIALSLALAAQLAYL 582 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 RF+W F A+ L LD +G FA G + +AA+LT++GYSVNDKVV++DR+ Sbjct: 583 AYRFRWTFGTAAVLALFLDCMVVIGLFAWLGKPIDGVFLAAMLTIVGYSVNDKVVLFDRV 642 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ L + F +++ +I +T+ R+V T + A + +AV+GG + FAI + G Sbjct: 643 REEWPLRRKDV-FDGVVNSAILQTVPRTVNTGLGALFILAALAVFGGDSLQDFAIALLVG 701 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 I V SS F+AAP + + + Sbjct: 702 ITVGTLSSSFVAAPAAIELEKINKQP 727 Score = 70.1 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 9/206 (4%) Query: 38 AMPKNRISLGLDLRGGSHLVLEV-DEDDF--VNGFLQMYSDELRSFLKKEGIGVFS-MRQ 93 LGLDLRGG+ LV E D D LR G+ + +R Sbjct: 22 FALTMPPRLGLDLRGGTQLVFEAKDSPKVKADAEATDRALDILRRRADALGVVEPTLVRS 81 Query: 94 IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN---LLVTTTEKEISIVLSQN 150 + +I + A + Q + +N L + +++ + + Sbjct: 82 GERRIIVELPGVLDPRKAASVIGKTAQLTFHPVLGAADENDKDALADESGQKLRLGPAAI 141 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 + D V A + ++ I ES + + DP R ++ Sbjct: 142 SGDAVTDAAARTNPQMGPGWFVTIDFKESGPWKKLTGEAAC--NPVGDPKRRIAIVLDNE 199 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDS 236 +S +V + + G Sbjct: 200 IISSPQVDESVGCNVGITGGSTQITG 225 >gi|289434807|ref|YP_003464679.1| protein-export membrane protein SecDF [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171051|emb|CBH27593.1| protein-export membrane protein SecDF [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 754 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 188/701 (26%), Positives = 341/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +RI+ +G++E +IQ GS+RI +QL G D + R++L T Sbjct: 51 ADGEGTVSKQTMTDTVTALDKRINSLGVAEPSIQIEGSNRIRVQLAGVTDQAEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N+ +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSTNKPIVTLKLKSADKFADVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + N L+AP ++ + + K +ISGNFT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKKNPA----------YLSAPNVSSVLDTDKVEISGNFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L AG+LP+++ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLADLLNAGALPVQMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G+VA ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVVASITLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGIS 553 R ++ +++ + + ++ F L F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVRRKDIHNLHEGINSFNLKTHFDRFDFVKHHRMFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + + A++ + + ++ +L + + Sbjct: 461 TGIVIIGIIILSVFRLNLGIDFASGTRAEISADKTLTETQIKKDLNDIGMPSDDIVFQGA 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 + V + + + V P + +EL + G + + Sbjct: 521 DSKTAVVSYKGTLSQDDVAKFKSYFE------DKYKHEPSISTVSPTVGKELAKNGFLAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 +++I +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASILIVLYIAVRFEFYMGIAAILSLLFDAFVIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRVRDISMKMQRFKTQEEIAGAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 94/258 (36%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGNFTTEEAKDLADL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + + VG + ++ +++ I+ II IA+ I++ ++ + Sbjct: 229 LNA-----GALPVQMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 VASITLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 80.9 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 72/730 (9%), Positives = 194/730 (26%), Gaps = 34/730 (4%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGEGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 + L + G+ S++ + N+I + A + ++ Q Sbjct: 58 SKQTMTDTVTALDKRINSLGVAEPSIQIEGSNRIRVQLAGVTDQAEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + + I + + ++ ++ + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSTNKPIVTLKLKSADKFADVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + +++P+ L ++ + + N + L ++ Sbjct: 178 DWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGNFTTEEAKDLADLLNAGALPVQ 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +++ S G V F M A +I L Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVVASITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNE-RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 P + + I + + F+ + Sbjct: 418 PGFFAVRRKDIHNLHEGINSFNLKTHFDRFDFVKHHRMFLSIFTGIVIIGIIILSVFRLN 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G A T+ + + I + ++F K + Sbjct: 478 LGIDFASGTRAEISADKTLTETQIKKDLNDIGMPSDDIVFQGADSKTAVVSYKGTLSQDD 537 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + + + + ++ ++ + + V + ++ Sbjct: 538 VAKFKSYFEDKYKHEPSISTVSPTVGKELAKNGFLALGVASILIVLYIAVRFEFYMGIAA 597 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S L + I F E + + + + + + + Sbjct: 598 ILSLLFDAFVIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRVRDISMKMQRFKT 657 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704 E + +++ L + + + + + F +G ++++ I Sbjct: 658 QEEIAGAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717 Query: 705 TKTLGFFALF 714 + + +F Sbjct: 718 FMAMQLWYVF 727 >gi|72160791|ref|YP_288448.1| bifunctional preprotein translocase subunit SecD/SecF [Thermobifida fusca YX] gi|71914523|gb|AAZ54425.1| protein translocase subunit secD / protein translocase subunit secF [Thermobifida fusca YX] Length = 911 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 183/935 (19%), Positives = 334/935 (35%), Gaps = 174/935 (18%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---- 60 WL L S++ G A P LGLDL GG+ +VLE Sbjct: 10 RWLRALISLLIMAGAFTAGWFLKP----------------KLGLDLSGGTQIVLETRDAE 53 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFL 119 D + + LR+ + G+ + R +N+I + + A+ Sbjct: 54 DGTKANASNTDLVVEVLRNRIDSLGVSEATLSRSGENRIIVELPGVQDPTEAAEV----- 108 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 L + + + + + S E + Sbjct: 109 ------LGQTAQLTIHPVLGVDQSIGTTGGGMFGDFRNAPADNSAEASDSEAQEEESPAE 162 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 + + DP + L D G Sbjct: 163 DEEGSEESTESGEEAEAVDPEDIA---------------------------LTLPDESGT 195 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 + ++G ++ A A + + +V++ F G + ++T + Sbjct: 196 LLQLGKPA-LTGDQVDRAEATLNELQTEWLVNVEFKGAGREAWKKLTGEAACHSPGDPRR 254 Query: 300 GR--------------VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 N + G+ I+G F E A LA ++ GSLP+ + Sbjct: 255 RIAIVLDNEIISAPEVDANDVACNVGMSGGRTSITGGFDAEEAKELALLIEGGSLPLPVE 314 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 V+ + VG LG+++I A + G+ L +++ + Y G +A ++ ++ A L Sbjct: 315 EVQRQTVGPTLGAEAIKASFIAGLIGIALTAIYISISYRFAGFLASVALLCYTVIAYAAL 374 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS-------- 457 LGATLTLP +AG VL IG+A+D+N+L+ ER REE ++ + V+ + Sbjct: 375 VALGATLTLPGLAGFVLSIGMAIDANVLIFERTREEYQRQEKVYQANKSAGMLDATEKEQ 434 Query: 458 -----------------------------RAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 RA+S + D+NIT LIA V+LFF G V+GF Sbjct: 435 DEAAAGVVTRRRRRAIPPNLLKSFTVGSQRAWSAVLDTNITTLIAAVLLFFLASGTVQGF 494 Query: 489 ---------AITMGLSILISMFTAISIVR------------------------------- 508 A + ++ + ++ R Sbjct: 495 GVTLGLGTIASMISALLIARVLMEWTVSRFTPLRRLWLIGAAAVVVGLVAVLSDGLRVDN 554 Query: 509 ---------------AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553 +I +I K +S I +S M+ +GI+ Sbjct: 555 VLLLVSGALGVLAVSVAIIPLIVRKFPRSSGIAHISAVRKWLVEHNPDLMKRSTLWLGIT 614 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 + ++ ++ N G++F GG + ++ R + + Q +G Sbjct: 615 GVVTVLALLGFAVRSPNLGVEFTGGRVMTFSVTEELNADQARELVAGAGYANAVVQEVEG 674 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 + + ++ + E + E +GP + EL K ++ + Sbjct: 675 G-------EISVRTGHISDQEAAKIQDALAEEGGEVERTSDEKIGPSMGSELRNKALIAL 727 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 I++ + + Y+ RF+W F L + L DI +G F G + +AA+L++IG+S Sbjct: 728 IVALVLQMAYLAWRFRWSFGLATMLALAFDIILVIGLFVWLGKPIDGVFLAALLSIIGFS 787 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 VND VVV+DR+R FR++ + S+ TL R+V + + + +AV GGS Sbjct: 788 VNDSVVVFDRVRDEWAHKPKG-DFREIANSSVLHTLPRTVNSGIGGLFILAALAVLGGSS 846 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + F+I M G++ S++F+A P+ +++ + Sbjct: 847 LTDFSIAMLVGLISGIFSTVFVAVPLAIWLQRFDR 881 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 66/215 (30%), Gaps = 35/215 (16%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + VGP + E I+ + +I IYI I +++ A L+ Sbjct: 317 QRQTVGPTLGAEAIKASFIAGLIGIALTAIYISISYRF-AGFLASVALLCYTVIAYAALV 375 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT------------------- 753 G L +A + IG +++ V++++R R+ + Sbjct: 376 ALGATLTLPGLAGFVLSIGMAIDANVLIFERTREEYQRQEKVYQANKSAGMLDATEKEQD 435 Query: 754 ---------------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 + + T++ I+ + + + F Sbjct: 436 EAAAGVVTRRRRRAIPPNLLKSFTVGSQRAWSAVLDTNITTLIAAVLLFFLASGTVQGFG 495 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + G + + S++ IA ++ + R+ Sbjct: 496 VTLGLGTIASMISALLIARVLMEWTVSRFTPLRRL 530 >gi|311069250|ref|YP_003974173.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus atrophaeus 1942] gi|310869767|gb|ADP33242.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus atrophaeus 1942] Length = 739 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 198/696 (28%), Positives = 341/696 (48%), Gaps = 28/696 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D++ + ++E + +R + +G+SE IQ G++RI +QL G + +R R++L T A+ Sbjct: 53 GDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILSTEAQ 112 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 +SF + G + + Y I + L A + V Sbjct: 113 LSFRDTNDK----ELLDGSDLVENGAKQTYDGTTNEPIVSVKLKDADKFGEVTKK---VL 165 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + + K + + ++AP ++Q + + I GNF ++ A L Sbjct: 166 KMAPNNQLVIWMDYEKGDSFKKEVQKENPKYVSAPNVSQELNTKDVTIEGNFKVQEAKDL 225 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A++L AG+LP+KL +VGA G ++ + A + G+ LI LFM++ Y GL+A Sbjct: 226 ASILNAGALPVKLTEKYSTSVGAQFGQQALNETVYAGIIGIALIFLFMLLYYRLPGLIAV 285 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + V +TL + + A LTLP IA ++LG+G+AVD+NI+ ERI+EE + +SV + Sbjct: 286 ITLSVYVYITLQVFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+++TIFD+NIT +IA VVLF FG +V+GFA + LSIL S TA+ + R ++ Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405 Query: 512 IFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILFSI 558 ++ + + + I F R + S +I Sbjct: 406 SLLVESRWLDRKKGWFGVKKKHIMDIQKTDEYTEPYTPFEKWDFTSKRKFFFIFSSAVTI 465 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I LL LN GIDF G ++ V ++ + V + SL + + + N Sbjct: 466 AGIILLLVFKLNLGIDFASGARIEVQSDHKLTTQQVEKDFTSLGMKPDTIVLSGEKSNIG 525 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V D +V + K K N V P + +EL R + V I+++ Sbjct: 526 VARFVGVPDKETVAKVKDYFKDKYGSE------PNVSTVSPTVGKELARNALYAVAIASL 579 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF++ A+ AI +L+ D + FF++ +E ++T +AAVLT+IGYS+ND + Sbjct: 580 GIIIYVSIRFEYKMAIAAIVSLLYDAFFIVAFFSVTRLEVDVTFIAAVLTIIGYSINDTI 639 Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R++MK +++ S+ +T RSV T + I V+ + + G + I + Sbjct: 640 VTFDRVREHMKKRKPKTFADLNHIVNLSLQQTFTRSVNTVLTVVIVVVVLLLLGSTSITN 699 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 F+ + G++ SS++IAA I L K + Sbjct: 700 FSFALLVGLLTGVYSSLYIAAQIWLVWKGKEFKKDK 735 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 49/408 (12%), Positives = 114/408 (27%), Gaps = 22/408 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ L + + L+ + + + I+LGLDL+GG ++ +V Sbjct: 1 MKKGR----LIAFFLFVLLIGTGLGYFTKPAAEN---------ITLGLDLQGGFEVLYDV 47 Query: 61 DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115 D L + L G+ +++ + N+I + A + + + Sbjct: 48 KPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107 Query: 116 TLFLQGVNSKLNVD---PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172 + Q N +L+ ++ ++ + + A + + Sbjct: 108 STEAQLSFRDTNDKELLDGSDLVENGAKQTYDGTTNEPIVSVKLKDADKFGEVTKKVLKM 167 Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232 + +++P + + + + N K + Sbjct: 168 APNNQLVIWMDYEKGDSFKKEVQKENPKYVSAPNVSQELNTKDVTIEGNFKVQEAKDLAS 227 Query: 233 LRDSDGNQY-LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + ++ L E G N + + F M I Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALNETVYAGIIGIALIFLFMLLYYRLPGLIAVIT 287 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + V + +V +P A I G A I+ L + ++ Sbjct: 288 LSVYVYITLQVFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399 G +I+ + V++ +F + + SI + I Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFI 395 >gi|295094227|emb|CBK83318.1| protein translocase subunit secF/protein translocase subunit secD [Coprococcus sp. ART55/1] Length = 730 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 185/697 (26%), Positives = 338/697 (48%), Gaps = 29/697 (4%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V + D +E + I QR++ +E ++ G +I ++PG + + Sbjct: 51 VTYEIQEDDYSDKDLEDTKYKIEQRVEAY-TNEYSVYEDGDKKITAEIPGVTNADEILNA 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-ATANFDPK 264 L K+ F E + ++G + Sbjct: 110 LNIEGKLEFLDPDNYTKWSQGQ----------------EYEAALTGDDIKNATAGIDSDN 153 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 + VV ++F + GA++F +VT N+G + ++ D +V++AP + AI G A+I+ + Sbjct: 154 GNDNVVQLAFTDEGAQKFADVTAANVGNIVYIIYDNKVVSAPTVQSAITGGSAEINKIGS 213 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E A LA +R G+LP+ L V VGA LGSD+I A G+ L+ L MI+++ Sbjct: 214 YEEAEQLATTIRIGALPLTLKQVRSNIVGATLGSDAISTSLKAGAIGIALVFLIMIIVFR 273 Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444 GLVA F++ IL L +L+L TLTLP IAG++L +G+AVD+N+++ RI+EE Sbjct: 274 IPGLVASFALAFYTILDLLVLNLFNVTLTLPGIAGVILSVGMAVDANVIIFTRIKEELAD 333 Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504 +SV ++ GF A S I D N+T LIA +VL FG G ++GFAIT+ + +++S+FTA+ Sbjct: 334 GKSVKQAVKGGFHNALSAIIDGNVTTLIAALVLGIFGTGTIKGFAITLAIGVVLSVFTAL 393 Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564 ++ ++++ ++ + A +F V I+ + Sbjct: 394 AVSQSLLTALVNLGVTDAKYFGVAREPKKTNFVKAGKFCMLGSLIVIIACFCMMPVNNKS 453 Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL-------QIGDISFQNFDGEKNF 617 LN+ ++F GG L V ++ LS ++ + IS Q G Sbjct: 454 KGSPLNFSVEFAGGTSLTVGFDKEYSLSEAEKDIVPVIAEAAGIGEAGISVQTVSGTNEI 513 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + ++ D +++ ++ ++ ++ +S E+ + I VI++A Sbjct: 514 VFKMPELSDDGTDDSQMSKVRSALTDKLGADVKEA--NVISGSVSSEMSKNAIFSVILAA 571 Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 I MLIYI IRF F A+ L+ D+ + + + T +A +LT++GYS+N Sbjct: 572 ILMLIYIAIRFHDVKFGASAVIALLHDVAMVFCLYIILRLTVGNTCIACLLTIVGYSINA 631 Query: 737 KVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 ++++DR+R+N+ + +++D+++ SIN+T R++YTS+ F+++ + + G + I Sbjct: 632 TIIIFDRVRENIGVMKPKKATYKDIVNLSINQTFSRTIYTSLTTFVTIFVLYIMGVASIK 691 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 FA+ + G+V+ A SS+ I P+ ++ K + Sbjct: 692 EFALTLMAGVVIGAYSSVCITGPLWYYMKTKLGKTEK 728 Score = 71.6 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 56/421 (13%), Positives = 133/421 (31%), Gaps = 27/421 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 RN ++I + +I + + A+ + ++ I LGLDL+GG + E+ Sbjct: 6 RNAVLVIIAFLLILGVAIYTAIFGVADRGKVEY---------IKLGLDLKGGLSVTYEIQ 56 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 EDD+ + L+ ++ ++ KIT + I + + + + Sbjct: 57 EDDYSDKDLEDTKYKIEQRVEAYTNEYSVYEDGDKKITAEIPGVTNADEILNALNIEGKL 116 Query: 122 VNSKLNVDPK----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + K + T +I + + D + ++ + + + Sbjct: 117 EFLDPDNYTKWSQGQEYEAALTGDDIKNATAGIDSDNGNDNVVQLAFTDEGAQKFADVTA 176 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + I+ P+ + G +A+++ + + L + Sbjct: 177 ANVGNIVY---IIYDNKVVSAPTVQSAITGGSAEINKIGSYEEAEQLATTIRIGALPLTL 233 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + I G L + K + + F M + + Sbjct: 234 KQV-----RSNIVGATLGSDAISTSLKAGAIGIALVFLIMIIVFRIPGLVASFALAFYTI 288 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD VL + +P I A ++ L ++ + G Sbjct: 289 LDLLVLNLFNVTLTLPGIAGVILSVGMAVDANVIIFTRIKEELADGKSVKQAVKGGFHNA 348 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +I G + +++ +F G + F+I L + + L++ + L + +L + Sbjct: 349 LSAIIDGNVTTLIAALVLGIF------GTGTIKGFAITLAIGVVLSVFTALAVSQSLLTA 402 Query: 418 A 418 Sbjct: 403 L 403 >gi|238923392|ref|YP_002936908.1| bifunctional preprotein translocase subunit SecD/SecF [Eubacterium rectale ATCC 33656] gi|238875067|gb|ACR74774.1| bifunctional preprotein translocase subunit SecD/SecF [Eubacterium rectale ATCC 33656] Length = 790 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 183/722 (25%), Positives = 331/722 (45%), Gaps = 13/722 (1%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 N + D + + + ++ + D+ S + + Sbjct: 45 QKQEATANGESTKDKDYQNIKLGLDLSGGVSITYHIKDKNPSDKDVNDTIAKLEERAESY 104 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN----NSKKGFMFGVR 231 +E ++ + G RI +++PG DP+++ + LG+ + F + N + Sbjct: 105 TTEYSVYKSGDDRITVEIPGVDDPNKVLEDLGSPGSLYFIAQYDSDGNANYTQDTSAQGG 164 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPK----THKPVVDISFDEMGARRFFEVTR 287 + + D + V + G + A+A +D T +PVV + + + + T+ Sbjct: 165 YKLNYDIDTLKANGSVILDGNDVKDASAQYDQSSSTSTKEPVVSLKLKDKAIDTWADATK 224 Query: 288 DN--IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 G+ + + D ++ P ++ I G I+G + A LA +R G++ ++L Sbjct: 225 KAKDAGQSIGIYYDDHFISVPTVSAVISDGNCVINGMKDYDEATSLATFIRVGAINLQLE 284 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 +E VGA LG ++ A + G++LI++FMIVLYG G+VA + L +LT+ + Sbjct: 285 ELESNVVGAQLGGTALTNAVKAAIIGIILIMIFMIVLYGILGVVASIGLALYSMLTVLFI 344 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 TLTLP IAGI+LGIG+AVD+N++V RIREE +SV +++ G+ +A S I D Sbjct: 345 YWFEITLTLPGIAGIILGIGMAVDANVIVFARIREEIAGGKSVLAAVNEGYKKALSAILD 404 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T IA +VL G G V+GFA T+ +SI++S+FTA+ I + + Sbjct: 405 GQVTTFIAALVLMVLGSGTVKGFAYTLMISIILSLFTALFIAKYLTRAFYGVGVRAEKFY 464 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + +I V ++ + + + LNY ++F GG Sbjct: 465 GKAKKRKVIRFVQNRVKYFVISGVVILAGIGGMIYFGATSGNALNYSLEFVGGTSTTADF 524 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 + + V ++ + +++ ++ + Sbjct: 525 GKDYTAAEVEKDIVPSVSKLLGNSAVQVTTVQGSHDVTLKTRTLSLDERQDLAALLEKDF 584 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704 ++ T+ + IS E+ + VIIS I ML+YIW RFK FA AI L+ D+ Sbjct: 585 NVDASTIETQSISSTISGEMRTNAVKAVIISCIFMLLYIWFRFKDIRFASSAILALVHDV 644 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLID 762 + +AL I T +A +LT++GYSVND +V++DR+R+N+ + D+ + Sbjct: 645 LVVVTAYALIRISVGSTFIACILTIVGYSVNDTIVIFDRIRENLHGIKKYSADELADIAN 704 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 +S+ +TL RS+ TS+ F+ VL + ++G + I F++P+ G++ SSI IA + Sbjct: 705 ESLTQTLSRSINTSLTTFVMVLLLFIFGHTSIREFSLPLMVGVLCGTYSSICIATELWYV 764 Query: 823 IY 824 + Sbjct: 765 MK 766 Score = 96.3 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 83/210 (39%), Gaps = 4/210 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 G ++ I + +VG ++ + + II I ++I Sbjct: 257 VINGMKDYDEATSLATFIRVGAINLQLEELESNVVGAQLGGTALTNAVKAAIIGIILIMI 316 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ + + + A L L T+ F F I L +A ++ IG +V+ V+V+ Sbjct: 317 FMIVLYGI-LGVVASIGLALYSMLTVLFIYWFEITLTLPGIAGIILGIGMAVDANVIVFA 375 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ + S +++ + L + + FI+ L + V G + FA + Sbjct: 376 RIREEIAG---GKSVLAAVNEGYKKALSAILDGQVTTFIAALVLMVLGSGTVKGFAYTLM 432 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 I+++ +++FIA + Y + + Sbjct: 433 ISIILSLFTALFIAKYLTRAFYGVGVRAEK 462 >gi|291525480|emb|CBK91067.1| protein translocase subunit secF/protein translocase subunit secD [Eubacterium rectale DSM 17629] gi|291528411|emb|CBK93997.1| protein translocase subunit secF/protein translocase subunit secD [Eubacterium rectale M104/1] Length = 785 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 183/722 (25%), Positives = 331/722 (45%), Gaps = 13/722 (1%) Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 N + D + + + ++ + D+ S + + Sbjct: 40 QKQEATANGESTKDKDYQNIKLGLDLSGGVSITYHIKDKNPSDKDVNDTIAKLEERAESY 99 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN----NSKKGFMFGVR 231 +E ++ + G RI +++PG DP+++ + LG+ + F + N + Sbjct: 100 TTEYSVYKSGDDRITVEIPGVDDPNKVLEDLGSPGSLYFIAQYDSDGNANYTQDTSVEGG 159 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPK----THKPVVDISFDEMGARRFFEVTR 287 + + D + V + G + A+A +D T +PVV + + + + T+ Sbjct: 160 YKLNYDIDTLKANGSVILDGNDVKDASAQYDQSSSTSTKEPVVSLKLKDKAIDTWADATK 219 Query: 288 DN--IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 G+ + + D ++ P ++ I G I+G + A LA +R G++ ++L Sbjct: 220 KAKDAGQSIGIYYDDHFISVPTVSAVISDGNCVINGMKDYDEATSLATFIRVGAINLQLE 279 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 +E VGA LG ++ A + G++LI++FMIVLYG G+VA + L +LT+ + Sbjct: 280 ELESNVVGAQLGGTALTNAVKAAIIGIILIMIFMIVLYGILGVVASIGLALYSMLTVLFI 339 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 TLTLP IAGI+LGIG+AVD+N++V RIREE +SV +++ G+ +A S I D Sbjct: 340 YWFEITLTLPGIAGIILGIGMAVDANVIVFARIREEIAGGKSVLAAVNEGYKKALSAILD 399 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T IA +VL G G V+GFA T+ +SI++S+FTA+ I + + Sbjct: 400 GQVTTFIAALVLMVLGSGTVKGFAYTLMISIILSLFTALFIAKYLTRAFYGVGVRAEKFY 459 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + +I V ++ + + + LNY ++F GG Sbjct: 460 GKAKKRKVIRFVQNRVKYFVISGVVILAGIGGMIYFGATSGNALNYSLEFVGGTSTTADF 519 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 + + V ++ + +++ ++ + Sbjct: 520 GKDYTAAEVEKDIVPSVSKLLGNSAVQVTTVQGSHDVTLKTRTLSLDERQDLAALLEKDF 579 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704 ++ T+ + IS E+ + VIIS I ML+YIW RFK FA AI L+ D+ Sbjct: 580 NVDASTIETQSISSTISGEMRTNAVKAVIISCIFMLLYIWFRFKDIRFASSAILALVHDV 639 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLID 762 + +AL I T +A +LT++GYSVND +V++DR+R+N+ + D+ + Sbjct: 640 LVVVTAYALIRISVGSTFIACILTIVGYSVNDTIVIFDRIRENLHGIKKYSADELADIAN 699 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 +S+ +TL RS+ TS+ F+ VL + ++G + I F++P+ G++ SSI IA + Sbjct: 700 ESLTQTLSRSINTSLTTFVMVLLLFIFGHTSIREFSLPLMVGVLCGTYSSICIATELWYV 759 Query: 823 IY 824 + Sbjct: 760 MK 761 Score = 96.3 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 83/210 (39%), Gaps = 4/210 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 G ++ I + +VG ++ + + II I ++I Sbjct: 252 VINGMKDYDEATSLATFIRVGAINLQLEELESNVVGAQLGGTALTNAVKAAIIGIILIMI 311 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ + + + A L L T+ F F I L +A ++ IG +V+ V+V+ Sbjct: 312 FMIVLYGI-LGVVASIGLALYSMLTVLFIYWFEITLTLPGIAGIILGIGMAVDANVIVFA 370 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ + S +++ + L + + FI+ L + V G + FA + Sbjct: 371 RIREEIAG---GKSVLAAVNEGYKKALSAILDGQVTTFIAALVLMVLGSGTVKGFAYTLM 427 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 I+++ +++FIA + Y + + Sbjct: 428 ISIILSLFTALFIAKYLTRAFYGVGVRAEK 457 Score = 67.0 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 8/125 (6%) Query: 1 MRNNP-WLVILYSMIC--CIGLLIALPNFLPQSMLDRFPSAMPKN-----RISLGLDLRG 52 M+ W++IL ++IC +G + + + I LGLDL G Sbjct: 8 MKKGKSWVIILVAVICIGLLGWYSTAVITDTKQKQEATANGESTKDKDYQNIKLGLDLSG 67 Query: 53 GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA 112 G + + + + + + +L + + ++IT+ + Sbjct: 68 GVSITYHIKDKNPSDKDVNDTIAKLEERAESYTTEYSVYKSGDDRITVEIPGVDDPNKVL 127 Query: 113 DKVTL 117 + + Sbjct: 128 EDLGS 132 >gi|260437939|ref|ZP_05791755.1| putative protein-export membrane protein SecDF [Butyrivibrio crossotus DSM 2876] gi|292809690|gb|EFF68895.1| putative protein-export membrane protein SecDF [Butyrivibrio crossotus DSM 2876] Length = 758 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 203/706 (28%), Positives = 336/706 (47%), Gaps = 23/706 (3%) Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S + + + + + + + + GS+R+ I++PG D + + L Sbjct: 49 VSVTYQAVGEVSSQDMNDVVYKMVKRVEEYDGAQVYKEGSNRVTIEIPGADDAQTILEEL 108 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV------------EDKVEISGIHL 254 G + F ++ K + ++ D+ GN LV + + ++G + Sbjct: 109 GKPGALYFINQYASDDKTAN-YTSQYAVDASGNLALVTKLNKTLDEIKADGTIILTGEDI 167 Query: 255 NGATANFDPKT---HKPVVDISFDEMGARRFFEVTRDNIGKPLAV--VLDGRVLTAPVIN 309 A + + + VV + E GA +F E T K ++ DG ++ P +N Sbjct: 168 KDAQGVYQQNSSGSKQAVVSFALTEEGAAKFKEATTKAASKKWSIGVYYDGEFISVPKVN 227 Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369 AI G+ I G IE A LA+ +R G+LP++L V + VGA LG ++I A + Sbjct: 228 SAITDGEGVIEGMADIEEAKNLASAIRIGALPVELEEVSSQVVGATLGQEAISTSVKAGI 287 Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429 G VL+ +FMI Y GL A+F++ L +L++ TLTLP IAGI+LGIG+AVD Sbjct: 288 IGFVLLFIFMIAYYKIPGLAANFALIAYTAGMLLILNVFNFTLTLPGIAGIILGIGMAVD 347 Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 +N+++N RI EE + SV ++ GF +A S I D N+T LIA +VL G G V+GFA Sbjct: 348 ANVIINARISEELARGVSVRSAIATGFKKALSAIIDGNVTTLIAAIVLGIIGSGPVKGFA 407 Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549 +T+G+ I +SMFT++ + R +++ + K + + + Sbjct: 408 LTLGIGIALSMFTSLVVARWVLLLLYHLGCNKEKMYGIHKERASVNFVSKRKIFISISAL 467 Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI--- 606 V + + + N ++F GG V ++ L V + Sbjct: 468 VIATGVAFATINGVKGNGSFNLDLEFSGGTSTTVNFDKEYTLDEVEKEIIPEIKKATGLS 527 Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666 + Q + V + + Q ++K K V ++E + IS E+ Sbjct: 528 TVQQQAVKGTNQVIFKTKWLTEKQQNSFYSLLKDKYNVDVTNPDKLSSEKISATISSEMR 587 Query: 667 RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 R I+ VI++ I MLIYIWIRF+ FA AI LI D+ + F+ + I T +A Sbjct: 588 RDAIIAVIVATICMLIYIWIRFRDVKFATSAIIALIHDVLIVITFYIISRIPVGNTFIAC 647 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 +LT++GYS+N +V++DR+R+NMK+ T S + ++++ SI TL RS+ TS+ FI VL Sbjct: 648 MLTIVGYSINATIVIFDRIRENMKIMTKS-TLSEVVNSSITSTLSRSINTSLTTFIMVLM 706 Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + G S I FA P+ GI+ SS+ I + + K A Sbjct: 707 LYILGVSSIREFAAPIMVGILAGGYSSVCITGALWFMMKKSSYKRA 752 Score = 111 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 80/181 (44%), Gaps = 4/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 ++++VG + +E I + II + + I++ +K L A LI L Sbjct: 266 SSQVVGATLGQEAISTSVKAGIIGFVLLFIFMIAYYKIP-GLAANFALIAYTAGMLLILN 324 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 +F L +A ++ IG +V+ V++ R+ + + +S R I + L Sbjct: 325 VFNFTLTLPGIAGIILGIGMAVDANVIINARISEELA---RGVSVRSAIATGFKKALSAI 381 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+ + + + G + FA+ + GI ++ +S+ +A +LL +Y + Sbjct: 382 IDGNVTTLIAAIVLGIIGSGPVKGFALTLGIGIALSMFTSLVVARWVLLLLYHLGCNKEK 441 Query: 833 I 833 + Sbjct: 442 M 442 >gi|163814894|ref|ZP_02206282.1| hypothetical protein COPEUT_01045 [Coprococcus eutactus ATCC 27759] gi|158449833|gb|EDP26828.1| hypothetical protein COPEUT_01045 [Coprococcus eutactus ATCC 27759] Length = 732 Score = 291 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 183/695 (26%), Positives = 335/695 (48%), Gaps = 25/695 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V + D +E + I +R++ +E ++ G +I ++PG + + + Sbjct: 51 VTYEIQEDDYSDKDLEDTKYKIEKRVEAY-TNEYSVYEDGDKKITAEIPGVTNADEILEA 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-ATANFDPK 264 L K+ F E + ++G + Sbjct: 110 LNIEGKLEFLDPDNYTKWSQGQ----------------EYEAALTGDDIKNATAGIDSDN 153 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 + VV ++F + GA++F +VT N+GK + ++ D +V++AP + AI G A+I+ + Sbjct: 154 GNDNVVQLAFTDEGAQKFADVTAANVGKVVYIIYDNKVVSAPTVQSAITGGSAEINKIGS 213 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E A LA +R G+LP+ L V VGA LGSD+I A G+ L+ L MI+++ Sbjct: 214 YEEAEQLATTIRIGALPLTLKQVRSNIVGATLGSDAISTSLKAGAIGIALVFLIMIIVFR 273 Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444 GLVA F++ IL L +++L TLTLP IAG++L +G+AVD+N+++ RI+EE Sbjct: 274 IPGLVASFALAFYTILDLLVINLFNVTLTLPGIAGVILSVGMAVDANVIIFTRIKEELAD 333 Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504 +SV ++ GF A S I D N+T LIA +VL FG G ++GFAIT+ + +++S+FTA+ Sbjct: 334 GKSVKQAVKGGFHNALSAIIDGNVTTLIAALVLGIFGTGTIKGFAITLAIGVVLSVFTAL 393 Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564 ++ ++++ ++ + A +F V I+ + Sbjct: 394 AVSQSLLTALVNLGVADAKYFGVAREPKKTNFVKAGKFCMLGSLIVIIACFCMMPVNNKS 453 Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL-----ESLQIGDISFQNFDGEKNFLV 619 LN+ ++F GG L V ++ LS S++ E+ IG+ + Sbjct: 454 KGSPLNFSVEFAGGTSLTVGFDKEYSLSEAESDIVPVIAEAAGIGEAGISVQTVSGTNEI 513 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 + + + ++ ++ +S E+ + I VI++AI Sbjct: 514 VFKMPELSDDGTDDSQMSKVRAALTDKLGADVKEANVISGSVSSEMSKNAIFSVILAAIL 573 Query: 680 MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 MLIYI IRF F A+ L+ D+ + + + T +A +LT++GYS+N + Sbjct: 574 MLIYIAIRFHDVKFGASAVIALLHDVAMVFCLYIILRLTVGNTCIACLLTIVGYSINATI 633 Query: 739 VVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +++DR+R+N+ + +++D+++ SIN+T R++YTS+ F+++ + + G + I F Sbjct: 634 IIFDRIRENIDIMRPKKATYKDIVNLSINQTFSRTIYTSLTTFVTIFVLYIMGVASIKEF 693 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 A+ + GI++ A SS+ I P+ + K + Sbjct: 694 ALTLMAGIIIGAYSSVCITGPLWYTMKTKLGKARK 728 Score = 71.3 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 54/421 (12%), Positives = 134/421 (31%), Gaps = 27/421 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 RN ++I + ++ + + A+ + ++ I LGLDL+GG + E+ Sbjct: 6 RNAVLVIIAFLLVLGVAIYTAIFGVADRGKVEY---------IKLGLDLKGGLSVTYEIQ 56 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 EDD+ + L+ ++ ++ KIT + I + + + + Sbjct: 57 EDDYSDKDLEDTKYKIEKRVEAYTNEYSVYEDGDKKITAEIPGVTNADEILEALNIEGKL 116 Query: 122 VNSKLNVDPK----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + K + T +I + + D + ++ + + + Sbjct: 117 EFLDPDNYTKWSQGQEYEAALTGDDIKNATAGIDSDNGNDNVVQLAFTDEGAQKFADVTA 176 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + I+ P+ + G +A+++ + + L + Sbjct: 177 ANVGKVVY---IIYDNKVVSAPTVQSAITGGSAEINKIGSYEEAEQLATTIRIGALPLTL 233 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + I G L + K + + F M + + Sbjct: 234 KQV-----RSNIVGATLGSDAISTSLKAGAIGIALVFLIMIIVFRIPGLVASFALAFYTI 288 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD V+ + +P I A ++ L ++ + G Sbjct: 289 LDLLVINLFNVTLTLPGIAGVILSVGMAVDANVIIFTRIKEELADGKSVKQAVKGGFHNA 348 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +I G + +++ +F G + F+I L + + L++ + L + +L + Sbjct: 349 LSAIIDGNVTTLIAALVLGIF------GTGTIKGFAITLAIGVVLSVFTALAVSQSLLTA 402 Query: 418 A 418 Sbjct: 403 L 403 >gi|315303287|ref|ZP_07873922.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria ivanovii FSL F6-596] gi|313628334|gb|EFR96832.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria ivanovii FSL F6-596] Length = 754 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 189/701 (26%), Positives = 338/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +RI+ +G++E +IQ G +RI +QL G D R++L T Sbjct: 51 ADGEGTVSKQTMTDTVTALDKRINSLGVAEPSIQIEGKNRIRVQLAGVTDQEEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N+ +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNKPIVTLKLKSADKFADVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + N L+AP ++ + + K +ISGNFT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKKNPA----------YLSAPNVSSVLDTDKVEISGNFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L AG+LP+++ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLADLLNAGALPVQMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G++A ++ L L +LSLL ATLTLP IAG++LG+G+AVD+N++ ERI+EE + + Sbjct: 281 GVIASITLVAYTYLVLLILSLLHATLTLPGIAGLILGVGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGIS 553 R ++ +++ + + ++ F L F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVRRKDIHNLHEGINSFNLKTHFDRFDFVKHHRLFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + + A+ + + ++ +L+S+ + Sbjct: 461 TGIVIIGIVILSIFRLNLGIDFASGTRAEITADHTLTETQIKKDLDSIGMPSDDIVFQGS 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + V P + +EL + G + Sbjct: 521 GSKTAVVSYKGTLSQDDVAKFKNYF------DDKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 I++I +++YI IRF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GIASILIVLYIAIRFEFYMGIAAILSLLFDAFIIFIFFSITRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T D ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735 Score = 107 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 94/258 (36%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGNFTTEEAKDLADL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + + VG + ++ +++ I+ II IA+ I++ ++ + Sbjct: 229 LNA-----GALPVQMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ +G +V+ V+ Y+R+++ +K+ Sbjct: 283 IASITLVAYTYLVLLILSLLHATLTLPGIAGLILGVGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 84.0 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 80/730 (10%), Positives = 193/730 (26%), Gaps = 34/730 (4%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGEGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124 + L + G+ S++ N+I + A +E ++ Q Sbjct: 58 SKQTMTDTVTALDKRINSLGVAEPSIQIEGKNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S I + + ++ ++ + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNKPIVTLKLKSADKFADVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + +++P+ L ++ + + N + L ++ Sbjct: 178 DWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGNFTTEEAKDLADLLNAGALPVQ 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +++ S G V F M A +I L Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIASITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLHATLTLPGIAGLILGVGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P + + I +R + L + I ++ Sbjct: 418 PGFFAVRRKDIHNLHEGINSFNLKTHFDRFDFVKHHRLFLSIFTGIVIIGIVILSIFRLN 477 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 + + F G A I + + I ++ + Sbjct: 478 LGIDFASGTRAEITADHTLTETQIKKDLDSIGMPSDDIVFQGSGSKTAVVSYKGTLSQDD 537 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ-LGVLANRPVDLSV 593 F IS + L GI + + + + ++ Sbjct: 538 VAKFKNYFDDKYKHEPSISTVSPTVGKELAKNGFWALGIASILIVLYIAIRFEFYMGIAA 597 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S L I I F E + + + + + + + Sbjct: 598 ILSLLFDAFIIFIFFSITRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704 E + +++ L + + + + + F +G ++++ I Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717 Query: 705 TKTLGFFALF 714 + + +F Sbjct: 718 FMAMQLWYVF 727 >gi|154505889|ref|ZP_02042627.1| hypothetical protein RUMGNA_03431 [Ruminococcus gnavus ATCC 29149] gi|153793907|gb|EDN76327.1| hypothetical protein RUMGNA_03431 [Ruminococcus gnavus ATCC 29149] Length = 728 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 167/696 (23%), Positives = 305/696 (43%), Gaps = 48/696 (6%) Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ------DPSRLRQLL 206 + + +E E+I R+D I + + +I + DP Q L Sbjct: 57 KKPTAEQLEMVREVIETRLDSQNILDREVTVDEKAGDVIVRFPWKSDEKNFDPETAIQEL 116 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G A+++F KG + Y+VE Sbjct: 117 GEMAELTFRGPDNTVYIKGSDVSRSQVAVDQQKNYVVE---------------------- 154 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 + F GA++F + T +G+ + + +D +++ P +N I GKA+I+G + E Sbjct: 155 -----LEFSSEGAKKFADATEKLVGQQMGIYMDDDLISNPTVNAKITGGKAEITGMSSKE 209 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A L+ + +GSLP + + LG ++ A + LI LFMI+ Y Sbjct: 210 EAQSLSDKINSGSLPFSMKTTNYSTISPTLGGKALNAMALAAEIAMALICLFMIIWYRLP 269 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G+++ ++ + L + ++S+ T+TLP IAG++L G+AVD+NI+++ERI EE +K Sbjct: 270 GVISCLTLTFQIALQILVISVPQYTITLPGIAGLILSAGMAVDANIIISERISEELKKGN 329 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 SV ++ G+ RA+S++ D N+T +L FG G + F T+ ++I++ + + Sbjct: 330 SVRNAVKNGYKRAFSSVLDGNVTTAAVAGILMIFGSGTMLSFGYTLLTGVIINLLAGVWM 389 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566 R M+ +IRYK N F D ++F A+ + S+ + Sbjct: 390 SRYMLNSVIRYKL-----FNQEKWFRKKKDKKILKFAEAKKYFFLTSVALLLTGTIWSCV 444 Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFLVRLQYQ 624 +G+ F GG+ L D ++ +E + +S Q + + + Sbjct: 445 NGMKLDTQFTGGVILRYTYTGKADTGQIQKEVEDIVDRSVSVQTSENSATGEKSLVITLS 504 Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 + + E++ T V P I + ++ + +++S + +++YI Sbjct: 505 GKKGLTPEQQKEILNTINQGNKNQFETSETSAVEPYIGAKALKNSAIAIVLSFLFIVVYI 564 Query: 685 WIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 +RF + A+ L+ DI L F +F I N VA LT+IGYS+ND +V+ Sbjct: 565 RLRFSALGGLASGVTAVIALVHDILIVLFIFGIFRIPVNDAFVAVTLTIIGYSINDTIVL 624 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGS 796 YDR+R++ + +L+D S ETL RS+ T+ + + V I + Sbjct: 625 YDRIREHRSNMKKKSTLAELVDISTTETLQRSINTAFTVVLCAFIIFVVSVVYRMESITN 684 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 F++P+ G++ SSI IA P+ ++ + R K + Sbjct: 685 FSLPLLAGLISGCYSSICIAGPLWVWWEEHREKIQK 720 Score = 57.4 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 42/400 (10%), Positives = 105/400 (26%), Gaps = 28/400 (7%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+N + + + + IA+ + G+D+RGG V E Sbjct: 1 MKNKKLHIWIALAVIVFFVCIAVFGCGE--------DIKGIRDMRFGIDIRGGVEAVFEP 52 Query: 61 DE--DDFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFAD-----SRFKENI 111 L+M + + + L + I ++ + + + F + E Sbjct: 53 SGLKKKPTAEQLEMVREVIETRLDSQNILDREVTVDEKAGDVIVRFPWKSDEKNFDPETA 112 Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171 ++ + + ++S + + +E S E ++ Sbjct: 113 IQELGEMAELTFRGPDNTVY------IKGSDVSRSQVAVDQQKNYVVELEFSSEGAKKFA 166 Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231 D I + +P+ ++ G A+++ Sbjct: 167 DATEKL-----VGQQMGIYMDDDLISNPTVNAKITGGKAEITGMSSKEEAQSLSDKINSG 221 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 L S + G LN + + + +T Sbjct: 222 SLPFSMKTTNYSTISPTLGGKALNAMALAAEIAMALICLFMIIWYRLPGVISCLTLTFQI 281 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 +V+ T + A A ++ + I + ++ L+ G+ + Sbjct: 282 ALQILVISVPQYTITLPGIAGLILSAGMAVDANIIISERISEELKKGNSVRNAVKNGYKR 341 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 + + ++ A + + + Y V Sbjct: 342 AFSSVLDGNVTTAAVAGILMIFGSGTMLSFGYTLLTGVII 381 >gi|291549198|emb|CBL25460.1| protein translocase subunit secF/protein translocase subunit secD [Ruminococcus torques L2-14] Length = 802 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 193/702 (27%), Positives = 344/702 (49%), Gaps = 21/702 (2%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q D+ ++ ++ +++R++Q E+ ++G +RI I++PG D +++ + Sbjct: 51 ITYQVKGDKPSQADMDDTVYKLQKRVEQYST-EAQAYQVGDNRISIEIPGVSDANKILEE 109 Query: 206 LGTTAKMSFHK-VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA----N 260 LG + F K ++ + + + ++ D + ++G + A+A + Sbjct: 110 LGQPGSLYFIKHKDSEGNENYSLTASGYTLNKSIDELKDTDSIVLTGTEVKTASAGALND 169 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRD---NIGKPLAVVLDGRVLTAPVINQAIPSGKA 317 K VD+ + GA +F T + N +A+ DG +++ P +N I +GKA Sbjct: 170 STTGNKKYGVDLELTDEGAEKFKTATEEAYNNNNDTIAIYYDGALISVPKVNAVIENGKA 229 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QISGN E A +A+ +R G L ++L + VGA LG D++ A + GL ++ + Sbjct: 230 QISGNMDYEEADNIASTIRIGGLNLELEELSSEVVGAQLGQDALKGSLIAGIIGLAIVCV 289 Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 FM +Y GL + ++ L L L LL+ TLTLP IAGI+LGIG+AVD+N+++ R Sbjct: 290 FMCWVYLLPGLASSLALILYTELILILLNAFDITLTLPGIAGIILGIGMAVDANVIIFAR 349 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 ++EE +SV SL GF +A S I D NIT LIA VL+ G G V+GFA T+ L I+ Sbjct: 350 VKEELTAGKSVHASLKSGFQKAMSAIVDGNITTLIAAGVLWLRGSGTVKGFAQTLALGIV 409 Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557 +SMFTA+ I R ++ + + F+ + +SI+ Sbjct: 410 VSMFTALVITRLIIFAFYGAGIRNEKVYGRHLKERKP-----VDFLGKKKIFFIVSIILC 464 Query: 558 ICSICLLFTHG------LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611 + ++ + +NY +DF GG V ++ L + S + +N Sbjct: 465 LAGPVMMGVNHARGIGAMNYSLDFVGGTSTNVTFDKEYTLEEIDSQMIPSLEEITGDKNI 524 Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + ++ + + ++ TE + +S E+ R ++ Sbjct: 525 QVQTVKDSNQVVFKTQTLDLEKREALASYLNENYGVEASDIATENISSTVSSEMRRDAVI 584 Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 VII+ I ML+YIW RFK FA A+ L+ D+ LGF+ + + T +A +LT++ Sbjct: 585 AVIIATICMLLYIWFRFKDIRFATSAVVALMHDVLVVLGFYVIARVSVGNTFIACMLTIV 644 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 GYS+N +V++DR+R+ + + + +DL+++ I +TL R++YT+ F+ V+ + + G Sbjct: 645 GYSINGTIVIFDRIREALATKSRTEDLKDLVNRCITQTLTRTIYTNFTTFVMVVALYILG 704 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 S I FA P+ GI+ +S+ I + + + A+ Sbjct: 705 VSSIKEFAAPLMVGIICGGYTSVCITGALWYVMKTRLGEEAK 746 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 87/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G+ + +I + ++E+VG ++ ++ ++ ++ II + +++ Sbjct: 232 SGNMDYEEADNIASTIRIGGLNLELEELSSEVVGAQLGQDALKGSLIAGIIGLAIVCVFM 291 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + L + LIL L F I L +A ++ IG +V+ V+++ R+ Sbjct: 292 CWVY-LLPGLASSLALILYTELILILLNAFDITLTLPGIAGIILGIGMAVDANVIIFARV 350 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 ++ + S + + + V ++ I+ + + G + FA +A G Sbjct: 351 KEELTA---GKSVHASLKSGFQKAMSAIVDGNITTLIAAGVLWLRGSGTVKGFAQTLALG 407 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 IVV+ +++ I I+ Y +N ++ Sbjct: 408 IVVSMFTALVITRLIIFAFYGAGIRNEKV 436 >gi|269303439|gb|ACZ33539.1| protein-export membrane protein SecDF [Chlamydophila pneumoniae LPCoLN] Length = 1402 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 176/835 (21%), Positives = 334/835 (40%), Gaps = 52/835 (6%) Query: 41 KNRISLGLDLRGGSHLVLEV---DEDDFV-NGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96 +N + LG+D GG L+L + SDEL + L K G+ +R+ + Sbjct: 576 ENILRLGIDFVGGRQLLLSFKDHQGKQLTDKEDILKVSDELYARLNKLGVSEIELRREGD 635 Query: 97 KITLSFADSRFKENIADK---------VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147 I LS S + V ++ + ++ L + Sbjct: 636 YIHLSVPGSSTISSSEILRTSKMSFHVVNERFSSYSASRY-EVQRFLDYLWFTSQAQGKT 694 Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 S I+ S + +++ + I +S + + Sbjct: 695 SPEEINTFASALFNKEVDVPPSVHEAITKLKSEGLAFSPSGCETPSTDLDTTFSMIAIGK 754 Query: 208 TTAKMSFHKVL--PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 + + V+ N + G + G Y++ V+ + + Sbjct: 755 DAEQKANPLVIVFRNYALDGASLKDIRPEFAAGEGYVLNFSVKDTSPKKMAEKLSPTESF 814 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 H + G V+ + + I A +SG FT Sbjct: 815 HTWTSAYC--QEGISGTANGQYSANRGWRMAVVIDGYMVSSPILNVPLKNHASVSGKFTH 872 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 LA+ L++G++ ++ E + +DLG +G + GL ++++ M V Y Sbjct: 873 REVSKLASDLKSGAMSFVPEVLSEETISSDLGKKQCTQGIISACCGLAMLIVLMSVYYRF 932 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A ++ LN++L A L L A LTL +AGIVL +G+AVD+N+LV ERIREE + Sbjct: 933 GGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEFLLS 992 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 QS+ S++ G+++A+ IFDSN+T ++A+ +LFF G ++GFA+T+ L I SMFTA+ Sbjct: 993 QSLKKSVEKGYTKAFGAIFDSNLTTVLASALLFFLDTGPIKGFALTLILGIFSSMFTALF 1052 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + + + + + + + + W V S+ C Sbjct: 1053 MTKFFFMLWMNKTQHTQLHMMNKFVGIKHDFLGGC----KKLWAVSGSVFLLGCVALGFG 1108 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLS-----------------VVRSNLESLQIGDISF 608 G+DFKGG R Sbjct: 1109 AWNSVLGMDFKGGYAFTFNPKEHGISDVAQMRGKVVHKLQEAGLSSRDFRIQTFGSSEKI 1168 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGPKI 661 + + +K L + ++E + + V K+ Sbjct: 1169 KIYFSDKALSYTKADTSLSPKINDHELALAVGLLSETGLDFSTETLNETQNFWSKVSSKL 1228 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG-----I 716 S+++ + +G++ + +L+Y+ +RF+W +A A+ LI D+ T + I Sbjct: 1229 SKKMRYQATIGLLGALAIILLYVSLRFEWQYAFSAVCALIHDLLATCAVLFIAHFFLKKI 1288 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 + +L A+ A++T++GYS+N+ ++++DR+R++ + + L++ ++ +T R+V T+ Sbjct: 1289 QIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQANLFT-PMHVLVNDALQKTFSRTVMTT 1347 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +L + GGS + +FA M GI++ SS++IA P+LLF+ ++ Sbjct: 1348 ATTLSVLLMLLFIGGSSVFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKENRSK 1402 >gi|290893885|ref|ZP_06556863.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes FSL J2-071] gi|290556602|gb|EFD90138.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes FSL J2-071] Length = 754 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 186/701 (26%), Positives = 338/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +RI+ +G++E +IQ G +RI +QL G D R++L T Sbjct: 51 ADGKGTVSKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + D L+AP ++ + + K +ISG+FT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G++A ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553 R ++ +++ + + + I F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + V AN+ + + ++ +L+++ + Sbjct: 461 AAIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGS 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 + V + + + V P + +EL + G + Sbjct: 521 DSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 ++++ +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T D ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRRK 735 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + + VG + ++ +++ I+ II +A+ I++ ++ + Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 87.1 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 81/730 (11%), Positives = 199/730 (27%), Gaps = 34/730 (4%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L L + G+ S++ + N+I + A +E ++ Q Sbjct: 58 SKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S N I + + ++ + + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + ++DP+ L ++ + + + + L +S Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +++ S G V F M A I L Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473 P + + I +R + L + A + ++ + Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFKLN 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G A T+ + + AI + ++F K + Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGSDSKTAVVSYKGTLSQND 537 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + + + ++ ++ + + V + ++ Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S L I I F E + + + + + + + Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704 E + +++ L + + + + + F +G ++++ I Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717 Query: 705 TKTLGFFALF 714 + + +F Sbjct: 718 FMAMQLWYVF 727 >gi|15618475|ref|NP_224760.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila pneumoniae CWL029] gi|15836095|ref|NP_300619.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila pneumoniae J138] gi|16752475|ref|NP_444737.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila pneumoniae AR39] gi|33241917|ref|NP_876858.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila pneumoniae TW-183] gi|4376857|gb|AAD18704.1| SecD/SecF fusion protein [Chlamydophila pneumoniae CWL029] gi|7189116|gb|AAF38059.1| secDF protein, putative [Chlamydophila pneumoniae AR39] gi|8978935|dbj|BAA98770.1| protein export [Chlamydophila pneumoniae J138] gi|33236427|gb|AAP98515.1| SecDF [Chlamydophila pneumoniae TW-183] Length = 1402 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 176/837 (21%), Positives = 334/837 (39%), Gaps = 56/837 (6%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR------SFLKKEGIGVFSMRQI 94 +N + LG+D GG L+L D L D L+ + L K G+ +R+ Sbjct: 576 ENILRLGIDFVGGRQLLL--SFKDHQGKQLTDKEDILKVSDELCARLNKLGVSEIELRRE 633 Query: 95 QNKITLSFADSRFKENIADK---------VTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 + I LS S + V ++ + ++ L + Sbjct: 634 GDYIHLSVPGSSTISSSEILGTSKMSFHVVNERFSSYSASRY-EVQRFLDYLWFTSQAQG 692 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S I+ S + +++ + I +S + + Sbjct: 693 KTSPEEINTFASALFNEEVDVPPSVHEAITKLKSEGLAFSPSGCETPSTDLDTTFSMIAI 752 Query: 206 LGTTAKMSFHKVL--PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 + + V+ N + G + G Y++ V+ + + Sbjct: 753 GKDAEQKANPLVIVFRNYALDGASLKDIRPEFAAGEGYVLNFSVKDTSPKKMAEKLSPTE 812 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 H + G V+ + + I A +SG F Sbjct: 813 SFHTWTSAYC--QEGISGTANGQYSANRGWRMAVVIDGYMVSSPILNVPLKNHASVSGKF 870 Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383 T LA+ L++G++ ++ E + +DLG +G + GL ++++ M V Y Sbjct: 871 THREVSKLASDLKSGAMSFVPEVLSEETISSDLGKKQCTQGIISACCGLAMLIVLMSVYY 930 Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 G++A ++ LN++L A L L A LTL +AGIVL +G+AVD+N+LV ERIREE Sbjct: 931 RFGGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEFL 990 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 +QS+ S++ G+++A+ IFDSN+T ++A+ +LFF G ++GFA+T+ L I SMFTA Sbjct: 991 LSQSLKKSVEKGYTKAFGAIFDSNLTTVLASALLFFLDTGPIKGFALTLILGIFSSMFTA 1050 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + + + + + + + + + W V S+ C Sbjct: 1051 LFMTKFFFMLWMNKTQHTQLHMMNKFVGIKHDFLRGC----KKLWAVSGSVFLLGCVALG 1106 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLS-----------------VVRSNLESLQIGDI 606 G+DFKGG R Sbjct: 1107 FGAWNSVLGMDFKGGYAFTFNPKEHGISDVAQMRGKVVHKLQEAGLSSRDFRIQTFGSSE 1166 Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGP 659 + + +K L + ++E + + V Sbjct: 1167 KIKIYFSDKALSYTKADTSLSPKINDHELALAVGLLSETGLDFSTETLNETQNFWSKVSS 1226 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG---- 715 K+S+++ + +G++ + +L+Y+ +RF+W +A A+ LI D+ T + Sbjct: 1227 KLSKKMRYQATIGLLGALAIILLYVSLRFEWQYAFSAVCALIHDLLATCAVLFIAHFFLK 1286 Query: 716 -IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 I+ +L A+ A++T++GYS+N+ ++++DR+R++ + + L++ ++ +T R+V Sbjct: 1287 KIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQANLFT-PMHVLVNDALQKTFSRTVM 1345 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 T+ +L + GGS + +FA M GI++ SS++IA P+LLF+ ++ Sbjct: 1346 TTATTLSVLLMLLFIGGSSVFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKENRSK 1402 >gi|116872956|ref|YP_849737.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741834|emb|CAK20958.1| protein-export membrane protein SecDF [Listeria welshimeri serovar 6b str. SLCC5334] Length = 754 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 185/701 (26%), Positives = 339/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 N +V + ++ + +R++ +G++E +IQ G++RI +QL G D + R++L T Sbjct: 51 ANGDGKVSKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGITDQAEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + D L+AP ++ + + K +ISG+FT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLAELLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G+VA ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVVASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553 R ++ +++ + + + I F++ + Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRYDFVKHHRLFLSTF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + + AN+ + + ++ +L+++ + Sbjct: 461 AGIVIVGIIILSIFRLNLGIDFASGTRAEITANQTLTETQIKKDLDTINMPSDDIVFQGT 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + + V P + +EL + G + Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKDYF------NDKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 +++I +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASILIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T D ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVVFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G++ + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLISSVFSSIFMAMQLWYVFKARQLRKK 735 Score = 108 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAEL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + + VG + ++ +++ I+ II IA+ I++ ++ + Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 VASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 84.4 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 77/730 (10%), Positives = 193/730 (26%), Gaps = 34/730 (4%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED----DF 65 + + ++ + ++ I+LGLDL+GG ++ EV Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPANGDGKV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L L + G+ S++ + N+I + A + ++ Q Sbjct: 58 SKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGITDQAEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S N I + + ++ + + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + ++DP+ L ++ + + + + L +S Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAELLNSGALPVK 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +++ S G V F M A +I L Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVVASITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNE-RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 P + + I + + F+ + Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRYDFVKHHRLFLSTFAGIVIVGIIILSIFRLN 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G A T+ + + I++ ++F K + Sbjct: 478 LGIDFASGTRAEITANQTLTETQIKKDLDTINMPSDDIVFQGTGSKTAVVSYKGTLSQND 537 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + + + ++ ++ + + V + ++ Sbjct: 538 VAKFKDYFNDKYKHEPSISTVSPTVGKELAKNGFWALGVASILIVLYIAVRFEFYMGIAA 597 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S L I I F E + + + + + + + Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704 E + +++ L + + + + + F +G I+++ I Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVVFTVLALVLFGSESILNFSIALLVGLISSVFSSI 717 Query: 705 TKTLGFFALF 714 + + +F Sbjct: 718 FMAMQLWYVF 727 >gi|154505870|ref|ZP_02042608.1| hypothetical protein RUMGNA_03412 [Ruminococcus gnavus ATCC 29149] gi|153793888|gb|EDN76308.1| hypothetical protein RUMGNA_03412 [Ruminococcus gnavus ATCC 29149] Length = 757 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 194/701 (27%), Positives = 329/701 (46%), Gaps = 21/701 (2%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q D + ++ +++R++Q E+T+ + G +RI I++PG D + + Sbjct: 51 ITYQVKGDTPSKEDMSDTIYKLQKRVEQYST-EATVYQEGDNRISIEIPGVTDANEILSE 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVR--FLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 LG + F K ++ + ++ ++ E V ++G + A + Sbjct: 110 LGQPGSLYFIKEKDSDGNPNYGLDTSGHYVLAKSMDELKEEGSVVLTGTDIKSAKSGSYQ 169 Query: 264 KT----HKPVVDISFDEMGARRFFEVTRDNIGKPLAV--VLDGRVLTAPVINQAIPSGKA 317 + ++ VV +S + G +F E T+ + DG +++ P +N I G+A Sbjct: 170 DSTTGANENVVQLSMTKEGTEKFAEATKAAKEAEETIAIYYDGELISVPRVNAEITDGQA 229 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 I G+ E A LA+ +R G L ++L + VGA LG ++I A GL ++ + Sbjct: 230 IIEGSMEYEEAEQLASTIRIGGLSVELEEIRSNVVGAQLGEEAISTSLMAGAIGLAIVFV 289 Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 FM ++Y GL + ++ + L L LL+ TLTLP IAGI+LGIG+AVD+N+++ R Sbjct: 290 FMCMVYLLPGLASSLALVIYTGLILVLLNAFDITLTLPGIAGIILGIGMAVDANVIIFAR 349 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 ++EE +SV +L+ GF +A S I D NIT LIA VL+ G G V+GFA T+ L I+ Sbjct: 350 VKEELTAGKSVKSALNAGFHKAMSAILDGNITTLIAAAVLWLKGSGTVKGFAQTLALGIV 409 Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557 +SMFTA+ I R ++ + + I F+ R +S+ Sbjct: 410 VSMFTALVITRMIVYAFYAVGIRNTKLYGRIKEEREP-----IDFLGKRKIFFAVSVAVI 464 Query: 558 ICSICLLFTHGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611 + + + NY ++FKGG V ++ L + + N Sbjct: 465 LVGFVFMGVNAGTGKGALNYSLEFKGGTSTNVTFDKAYTLKEIDETMIPDLEKVTDDPNI 524 Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + ++ + K E TE + +S E+ I+ Sbjct: 525 QVQTVANSNQVIFKTQTLDLEKREAFAKYMADEFGVEEKDITTENISSTVSSEMRVDAII 584 Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 V I+ + ML+YIW+RFK FA A+ LI D+ L F+ + I T +A +LT++ Sbjct: 585 AVAIATVFMLLYIWLRFKDIRFATSAVVALIHDVLVVLAFYVIARISVGNTFIACMLTIV 644 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 GYS+N +V++DR+R+ MK + L+++ I TL RS+YTS+ F+ V + + G Sbjct: 645 GYSINATIVIFDRIREEMKTKKRTEELDTLVNRCITRTLTRSIYTSLTTFVMVAVLFIMG 704 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 S I FA+P+ GI+ A SS+ I + + K A Sbjct: 705 VSSIKEFALPLMVGIICGAYSSVCITGALWYVMKTKIGKKA 745 Score = 107 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 88/250 (35%), Gaps = 4/250 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + ++ G + +I Sbjct: 191 KFAEATKAAKEAEETIAIYYDGELISVPRVNAEITDGQAIIEGSMEYEEAEQLASTIRIG 250 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + + +VG ++ E I ++ I + +++ + + L + L++ Sbjct: 251 GLSVELEEIRSNVVGAQLGEEAISTSLMAGAIGLAIVFVFMCMVY-LLPGLASSLALVIY 309 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 L F I L +A ++ IG +V+ V+++ R+++ + S + ++ Sbjct: 310 TGLILVLLNAFDITLTLPGIAGIILGIGMAVDANVIIFARVKEELTA---GKSVKSALNA 366 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ + + ++ I+ + + G + FA +A GIVV+ +++ I I+ Sbjct: 367 GFHKAMSAILDGNITTLIAAAVLWLKGSGTVKGFAQTLALGIVVSMFTALVITRMIVYAF 426 Query: 824 YDWRAKNARI 833 Y +N ++ Sbjct: 427 YAVGIRNTKL 436 Score = 70.9 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 7/134 (5%) Query: 1 MRNNPWLVILYSMICCIGLL-IALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + ++ L + I LL + I LGLDL GG + + Sbjct: 1 MKKSKGIISLILTVVLIALLGFTTVVGFGKGQTGA------AKNIKLGLDLEGGVSITYQ 54 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 V D + +L+ +++ ++ N+I++ I ++ Sbjct: 55 VKGDTPSKEDMSDTIYKLQKRVEQYSTEATVYQEGDNRISIEIPGVTDANEILSELGQPG 114 Query: 120 QGVNSKLNVDPKKN 133 K Sbjct: 115 SLYFIKEKDSDGNP 128 >gi|313608662|gb|EFR84506.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes FSL F2-208] Length = 754 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 186/701 (26%), Positives = 337/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +RI+ +G++E +IQ G +RI +QL G D R++L T Sbjct: 51 ADGKGTVSKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + D L+AP ++ + + K +ISG+FT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G++A ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553 R ++ +++ + + + I F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + V AN+ + + ++ +L+++ + Sbjct: 461 AAIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGS 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + + V P + +EL + G + Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 ++++ +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T D ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + + VG + ++ +++ I+ II +A+ I++ ++ + Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 87.1 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 81/730 (11%), Positives = 199/730 (27%), Gaps = 34/730 (4%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L L + G+ S++ + N+I + A +E ++ Q Sbjct: 58 SKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S N I + + ++ + + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + ++DP+ L ++ + + + + L +S Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +++ S G V F M A I L Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473 P + + I +R + L + A + ++ + Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFKLN 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G A T+ + + AI + ++F K + Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGSGSKTAVVSYKGTLSQND 537 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + + + ++ ++ + + V + ++ Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S L I I F E + + + + + + + Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704 E + +++ L + + + + + F +G ++++ I Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717 Query: 705 TKTLGFFALF 714 + + +F Sbjct: 718 FMAMQLWYVF 727 >gi|217964326|ref|YP_002350004.1| protein-export membrane protein SecDF [Listeria monocytogenes HCC23] gi|217333596|gb|ACK39390.1| protein-export membrane protein SecDF [Listeria monocytogenes HCC23] gi|307571108|emb|CAR84287.1| protein-export membrane protein SecDF [Listeria monocytogenes L99] Length = 754 Score = 290 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 186/701 (26%), Positives = 337/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +RI+ +G++E +IQ G +RI +QL G D R++L T Sbjct: 51 ADGKGTVSKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + D L+AP ++ + + K +ISG+FT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G++A ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553 R ++ +++ + + + I F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + V AN+ + + ++ +L+++ + Sbjct: 461 AAIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGS 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + + V P + +EL + G + Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 ++++ +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T D ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRRK 735 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + + VG + ++ +++ I+ II +A+ I++ ++ + Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 87.1 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 81/730 (11%), Positives = 199/730 (27%), Gaps = 34/730 (4%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L L + G+ S++ + N+I + A +E ++ Q Sbjct: 58 SKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S N I + + ++ + + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + ++DP+ L ++ + + + + L +S Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +++ S G V F M A I L Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473 P + + I +R + L + A + ++ + Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFKLN 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G A T+ + + AI + ++F K + Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGSGSKTAVVSYKGTLSQND 537 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + + + ++ ++ + + V + ++ Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S L I I F E + + + + + + + Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704 E + +++ L + + + + + F +G ++++ I Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717 Query: 705 TKTLGFFALF 714 + + +F Sbjct: 718 FMAMQLWYVF 727 >gi|291455321|ref|ZP_06594711.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces albus J1074] gi|291358270|gb|EFE85172.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces albus J1074] Length = 788 Score = 290 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 204/715 (28%), Positives = 361/715 (50%), Gaps = 30/715 (4%) Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 + I + + + + ++++E++RQR+D +G++E + R GS RI+++LPG Q Sbjct: 58 SGGTRIVLQAQEAQGRTPDAESTDRALEVLRQRVDALGVAEPQLVRSGSDRIVVELPGVQ 117 Query: 198 DPSRLRQLLGTTAKMSFHKV--LPNNSKKGFMFGVRFLRDSDGNQYLVE-DKVEISGIHL 254 DP +++G TA+++FH V + G R L D D +E ++G + Sbjct: 118 DPREAAEVIGRTAQLTFHPVRGEAEKAAPQAEDGSRALADPDRPDAFLELGPTALTGEGV 177 Query: 255 NGATANFDPKTHK-PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------ 301 + A +FD + + V +SF++ A + +T + Sbjct: 178 SDARPDFDAASGEGWAVTLSFEKKAAGAWTRLTGEAACAAPGDPGRRVAIVLDDRVVSAP 237 Query: 302 -VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + I G QI+G F E A LAA+++ G+LP+ + +VE+ VG LG+D+ Sbjct: 238 GMRETVPCGTGITGGSTQITGGFDAEGARELAALVKGGALPLPVEVVEQSTVGPSLGADA 297 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G A + GL +F+ +Y GL+A ++ L +++ A + LGATLT+P IAG Sbjct: 298 IRAGAWAALIGLACTAVFITAVYRLLGLLATVALSLYGLISYAAIVALGATLTMPGIAGF 357 Query: 421 VLGIGLAVDSNILVNERIREEN----RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 VL +G+AVD+N+LV ER REE R+ + + L GF++A+S + DSN+T LIA + Sbjct: 358 VLAVGMAVDANVLVFERAREEYGQASRRPKDLRRPLARGFAKAWSAVLDSNVTTLIAAGL 417 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFF 532 LF G V+GF +T+ + +L SM +A+ I R + + + ++ + R Sbjct: 418 LFALATGPVKGFGVTLAVGVLASMVSALVITRVLADWALGRGLVRRRPQATGMAGKGRLR 477 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 + + MR+ + +S + ++ + GL G++F GG Q RPVD Sbjct: 478 TRLEQRPPRLMRSGSRWLLLSGGLLLVALAGVGVRGLELGVEFTGGRQTQYATERPVDAE 537 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 R+ + + + Q D + LV ++ P + + V+ + E T++ Sbjct: 538 TARAAVSAAGFPEAVVQRADQDGASLVTVRTGPLEDAEE----RRVRAALAEHGGEVTVE 593 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 ++VGP + +EL K ++ + ++ A L+Y+ +RF+ AL A+ ++ D+ +G FA Sbjct: 594 RDDLVGPSLGQELRDKAVLALAVAVGAQLVYLTVRFRGTLALAAVVAMVQDVLLVVGLFA 653 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G + +AA+LT++GYSVND VVV+D + ++ S + L D ++ +TL R+ Sbjct: 654 WLGKPVDSVFLAALLTVVGYSVNDTVVVFD-RLRELRRLRPSAPWETLGDLAVGQTLPRT 712 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 V T + A +L +A+ GG + FA+ + GI V S+IF A P+ + + R Sbjct: 713 VNTGLGAVFVLLALALSGGGTLTDFAVALLAGITVGIGSTIFTAMPLAVRLERRR 767 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 66/180 (36%), Gaps = 2/180 (1%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VGP + + IR G +I ++I ++ L A L L + Sbjct: 286 QSTVGPSLGADAIRAGAWAALIGLACTAVFITAVYRLL-GLLATVALSLYGLISYAAIVA 344 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRS 772 G + +A + +G +V+ V+V++R R+ + R + + + Sbjct: 345 LGATLTMPGIAGFVLAVGMAVDANVLVFERAREEYGQASRRPKDLRRPLARGFAKAWSAV 404 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + +++ I+ + + F + +A G++ + S++ I + + R Sbjct: 405 LDSNVTTLIAAGLLFALATGPVKGFGVTLAVGVLASMVSALVITRVLADWALGRGLVRRR 464 >gi|329766810|ref|ZP_08258340.1| hypothetical protein HMPREF0428_00037 [Gemella haemolysans M341] gi|328839321|gb|EGF88903.1| hypothetical protein HMPREF0428_00037 [Gemella haemolysans M341] Length = 764 Score = 290 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 188/700 (26%), Positives = 328/700 (46%), Gaps = 31/700 (4%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 + A++ + + I +RI+ +G+SE I +RI ++L G +D R++L T A Sbjct: 60 EGQTIDEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLSTQA 119 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 ++ + G + +++ G + K + Sbjct: 120 NLTIRDIEDKVLLDGSDLQENGASQGFDQNNKPDVNLKLKDADKFGNITSEISKRGQGKN 179 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 + KP ++AP + Q I S QI+GNFT++ A Sbjct: 180 LMVIWMDFNEGDSFKAEAAKEKPK-------YVSAPQVAQTINSKDVQITGNFTVKEAKE 232 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 +AA+L +G+LP+KL + +VGA G+D++ + A L +I LFM+V+Y G VA Sbjct: 233 MAALLNSGALPVKLTEIYSNSVGAQFGADALNQTVYAGAIALAIICLFMLVIYRVPGFVA 292 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + V +T+ +++ LTLP IA ++LG+G+AVD+NI++ ERI+EE R + Sbjct: 293 SVMMVAYVYITVVFFNMISGVLTLPGIAALILGVGMAVDANIIMYERIKEEVRAGYPLKK 352 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 + G ++ TIFDS T +IA VVLF FG +V+GFA + LSIL+S TA+ R + Sbjct: 353 AYLDGAKQSLWTIFDSQFTTVIAAVVLFIFGTSSVKGFATMLLLSILVSFITAVFGTRLL 412 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFS 557 + ++ + I + + F + +SI Sbjct: 413 LSLLVNSNIFNNHPGYFGVSKKSIHETKFGINSLNLSTKFEWLSFTKHMKKFFALSIAIM 472 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617 I L + LN GIDF G ++ V AN + + V+ +L +L++ D +K Sbjct: 473 IAGSISLGMNKLNLGIDFSSGTRIDVAANTELSVDKVQEDLNNLKVKDEKIVLSPDKKQA 532 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + + G + KK + +V P I +EL + + ++ ++ Sbjct: 533 TIHSKESFGQEKSIEIKEYFAKKYEKDAN-------LSVVSPVIGKELAKNALFALMYAS 585 Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737 I ++IY+ RF+W L ++ L+ D+ + +L +E ++T +AAVLT++GYS+ND Sbjct: 586 IGIIIYVAFRFEWRMGLTSVIALLHDVCIIIFITSLLRLEVDITFIAAVLTIVGYSINDT 645 Query: 738 VVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 +V +DR+R++M + L+D S+ +TL RS+ T + I+V+ M + G S I Sbjct: 646 IVTFDRIREHMHHEKVLKSKEQIYKLVDVSLRQTLTRSINTVLTVIITVVVMLLLGSSSI 705 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833 +F + + G+V SS+FIAA + + K +I Sbjct: 706 YTFNVALLIGLVFGLYSSLFIAAQLWAVLKVRELNKKGKI 745 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 47/134 (35%), Gaps = 18/134 (13%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + L L ++ + + S +++LGLDL+GG ++ +V+ Sbjct: 10 KFSRILAFLSLVVIILTSI-------------GLTSKSNAEKVNLGLDLQGGFEVLYQVE 56 Query: 62 E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116 ++ +D + + G+ + + N+I + A + +E+ ++ Sbjct: 57 PLKEGQTIDEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLS 116 Query: 117 LFLQGVNSKLNVDP 130 + Sbjct: 117 TQANLTIRDIEDKV 130 >gi|46907755|ref|YP_014144.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes serotype 4b str. F2365] gi|226224128|ref|YP_002758235.1| protein-export membrane protein SecDF [Listeria monocytogenes Clip81459] gi|254931462|ref|ZP_05264821.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes HPB2262] gi|46881024|gb|AAT04321.1| protein-export membrane protein SecDF [Listeria monocytogenes serotype 4b str. F2365] gi|225876590|emb|CAS05299.1| Putative protein-export membrane protein SecDF [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583014|gb|EFF95046.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes HPB2262] gi|332311969|gb|EGJ25064.1| Preprotein translocase subunits SecDF [Listeria monocytogenes str. Scott A] Length = 754 Score = 290 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 185/701 (26%), Positives = 337/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +RI+ +G++E +IQ G +RI +QL G D R++L T Sbjct: 51 ADGKGTVSKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + D L+AP ++ + + K +ISG+FT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G++A ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553 R ++ +++ + + + I F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + V AN+ + + ++ +L+++ + Sbjct: 461 AAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGS 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + + V P + +EL + G + Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 ++++ +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T + ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735 Score = 107 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + + VG + ++ +++ I+ II IA+ I++ ++ + Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 87.1 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 81/730 (11%), Positives = 199/730 (27%), Gaps = 34/730 (4%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L L + G+ S++ + N+I + A +E ++ Q Sbjct: 58 SKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S N I + + ++ + + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + ++DP+ L ++ + + + + L +S Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +++ S G V F M A I L Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473 P + + I +R + L + A + ++ + Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFRLN 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G A T+ + + AI + ++F K + Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGSGSKTAVVSYKGTLSQND 537 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + + + ++ ++ + + V + ++ Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S L I I F E + + + + + + + Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704 E + +++ L + + + + + F +G ++++ I Sbjct: 658 KEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717 Query: 705 TKTLGFFALF 714 + + +F Sbjct: 718 FMAMQLWYVF 727 >gi|302671352|ref|YP_003831312.1| protein-export membrane protein SecDF [Butyrivibrio proteoclasticus B316] gi|302395825|gb|ADL34730.1| protein-export membrane protein SecDF [Butyrivibrio proteoclasticus B316] Length = 755 Score = 290 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 187/703 (26%), Positives = 315/703 (44%), Gaps = 15/703 (2%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +SI + + ++ ++QR+DQ ES + + GS+RI I++PG D Sbjct: 46 AGGVSITYEVVGDENPDKEDMSDTIYKLQQRVDQYST-ESLVYQEGSNRINIEIPGVSDA 104 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFG--------VRFLRDSDGNQYLVEDKVEISG 251 + + + LG + F + + + + + + + +SG Sbjct: 105 NAILEELGQPGNLYFIAQTDSEGNPNYEYKLDSTYGLFYTYELSKTIEELEADGSIVLSG 164 Query: 252 IHLNGATANFDPKTHKPVV-----DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 + A A + ++ D + A G+ + + DG+ ++ P Sbjct: 165 SDVETAQAVYQQDSYGGNEPVVSLDFTDAGAAAFAEATTKAYANGESIGIYYDGQFISVP 224 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 + AI GKA I+G E A LA+M+R G L ++LN + VGA LGSD+I Sbjct: 225 KVQAAITDGKAVITGMTDYENAANLASMIRIGGLKLQLNELRSNVVGAQLGSDAIRTSLY 284 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 A G LI +FMIV + GL A ++ L + +LS TLTLP IAGI+L IG+ Sbjct: 285 AAAVGFALIAVFMIVFFRVLGLSATLALAFYSSLMVFMLSAFEQTLTLPGIAGIILSIGM 344 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 AVD+N+LV RI+EE + V + G+++A S+I D N+T I LF G G+++ Sbjct: 345 AVDANVLVFSRIKEEIAGGKDVNEARKAGYNKALSSIIDGNVTTFIVAFWLFILGTGSIK 404 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546 GFAIT+ I++SMFTA+ I R + + + + Sbjct: 405 GFAITLMFGIVLSMFTALVITRTITSLLYGIGLQNPVLYGKAKAPVKFDFVGKRKVFYGV 464 Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606 + I+ ++ NY +DF GG V + +L+ + + Sbjct: 465 SCAIVIAGFIAMGVNAGQGKGAFNYSLDFVGGTSTTVTFSEAKELADLEKTVAEDIKKAA 524 Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666 + ++ + + + + E + IS E+ Sbjct: 525 GINQIQIQTVTGTNQVIFKTSTLDVKQREAVEDVLVNNYEVSADNIAAETISSVISSEMR 584 Query: 667 RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 I+ +++S + MLIYIWIRFK F AI L D + +A T +A Sbjct: 585 VDAIIALLVSLVCMLIYIWIRFKDIKFGAAAIIALAHDALIVIVSYAFTRYAVGNTFIAV 644 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 VLT+IGYS+ND +V +DR+R+N+ T+ + DL++ S+ +T+ RS++TS F +V Sbjct: 645 VLTIIGYSINDTIVTFDRIRENLANATSKKEYADLVNGSVAQTVTRSLFTSATTFFTVCA 704 Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +G + I +FA+P+ G++ SSIFIA+P+ + Sbjct: 705 LYAFGVADIKAFALPLMVGVICGTYSSIFIASPMWYDLKTKFK 747 Score = 55.9 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 1/124 (0%) Query: 42 NRISLGLDLRGGSHLVLEVDEDD-FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 + I LGLDL GG + EV D+ + +L+ + + ++ N+I + Sbjct: 37 SSIPLGLDLAGGVSITYEVVGDENPDKEDMSDTIYKLQQRVDQYSTESLVYQEGSNRINI 96 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 I +++ + + + + Sbjct: 97 EIPGVSDANAILEELGQPGNLYFIAQTDSEGNPNYEYKLDSTYGLFYTYELSKTIEELEA 156 Query: 161 EQSM 164 + S+ Sbjct: 157 DGSI 160 >gi|47094198|ref|ZP_00231913.1| protein-export membrane protein SecDF [Listeria monocytogenes str. 4b H7858] gi|254824414|ref|ZP_05229415.1| export membrane protein SecDF [Listeria monocytogenes FSL J1-194] gi|254852151|ref|ZP_05241499.1| export membrane protein SecDF [Listeria monocytogenes FSL R2-503] gi|254993585|ref|ZP_05275775.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes FSL J2-064] gi|255520695|ref|ZP_05387932.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes FSL J1-175] gi|300764806|ref|ZP_07074796.1| protein-export membrane protein SecDF [Listeria monocytogenes FSL N1-017] gi|47017425|gb|EAL08243.1| protein-export membrane protein SecDF [Listeria monocytogenes str. 4b H7858] gi|258605454|gb|EEW18062.1| export membrane protein SecDF [Listeria monocytogenes FSL R2-503] gi|293593649|gb|EFG01410.1| export membrane protein SecDF [Listeria monocytogenes FSL J1-194] gi|300514482|gb|EFK41539.1| protein-export membrane protein SecDF [Listeria monocytogenes FSL N1-017] Length = 754 Score = 290 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 185/701 (26%), Positives = 337/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +RI+ +G++E +IQ G +RI +QL G D R++L T Sbjct: 51 ADGKGTVSKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + D L+AP ++ + + K +ISG+FT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G++A ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553 R ++ +++ + + + I F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + V AN+ + + ++ +L+++ + Sbjct: 461 AAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDAINMPSDDIVFQGS 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + + V P + +EL + G + Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 ++++ +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T + ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735 Score = 107 bits (266), Expect = 8e-21, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + + VG + ++ +++ I+ II IA+ I++ ++ + Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 87.8 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 81/730 (11%), Positives = 200/730 (27%), Gaps = 34/730 (4%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L L + G+ S++ + N+I + A +E ++ Q Sbjct: 58 SKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S N I + + ++ + + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + ++DP+ L ++ + + + + L +S Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +++ S G V F M A I L Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473 P + + I +R + L + A + ++ + Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFRLN 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G A T+ + + AI++ ++F K + Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAINMPSDDIVFQGSGSKTAVVSYKGTLSQND 537 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + + + ++ ++ + + V + ++ Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S L I I F E + + + + + + + Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704 E + +++ L + + + + + F +G ++++ I Sbjct: 658 KEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717 Query: 705 TKTLGFFALF 714 + + +F Sbjct: 718 FMAMQLWYVF 727 >gi|16800630|ref|NP_470898.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria innocua Clip11262] gi|16414049|emb|CAC96793.1| lin1562 [Listeria innocua Clip11262] Length = 754 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 185/701 (26%), Positives = 340/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +R++ +G++E +IQ G++RI +QL G D + R++L T Sbjct: 51 ADGKGTVSKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDASNNPIVTLKLKSADKFASVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + N L+AP ++ + + K +ISG+FT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKKNPA----------YLSAPNVSSVLDTDKVEISGSFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLAELLNSGALPVKMTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G++A ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVIASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553 R ++ +++ + + + I F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRYDFVKHHRLFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + V AN+ + + ++ +L+++ + Sbjct: 461 AAIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSNDIVFQGS 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + + + V P + +EL + G + Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKDYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 ++++ +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T D ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAEL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + T + VG + ++ +++ I+ II +A+ I++ ++ + Sbjct: 229 LNS-----GALPVKMTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 IASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 84.4 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 79/730 (10%), Positives = 198/730 (27%), Gaps = 34/730 (4%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L L + G+ S++ + N+I + A + ++ Q Sbjct: 58 SKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S N I + + ++ + + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDASNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + +++P+ L ++ + + + + L +S Sbjct: 178 DWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAELLNSGALPVK 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + S G V F M A +I L Sbjct: 238 MTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLPGVIASITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473 P + + I +R + L + A + ++ + Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRYDFVKHHRLFLSIFAAIVIVGIVILSIFKLN 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G A T+ + + AI + ++F K + Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSNDIVFQGSGSKTAVVSYKGTLSQND 537 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + + + ++ ++ + + V + ++ Sbjct: 538 VAKFKDYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S L I I F E + + + + + + + Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704 E + +++ L + + + + + F +G ++++ I Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717 Query: 705 TKTLGFFALF 714 + + +F Sbjct: 718 FMAMQLWYVF 727 >gi|256827664|ref|YP_003151623.1| protein-export membrane protein SecF/protein-export membrane protein SecD [Cryptobacterium curtum DSM 15641] gi|256583807|gb|ACU94941.1| protein-export membrane protein SecF/protein-export membrane protein SecD [Cryptobacterium curtum DSM 15641] Length = 977 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 196/793 (24%), Positives = 333/793 (41%), Gaps = 84/793 (10%) Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 V L + + + + V S ++ S +II R++ +G SE+T+ Sbjct: 35 VMFMPPQQKINQGLDIQGGLSVVLTANSTTGEAVTSEDMDISRDIIESRVNALGASEATV 94 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH--------KVLPNNSKKGFMFGVRFL 233 Q+ GS++IL+Q+PG D +G T K+ F V G + Sbjct: 95 QKQGSNQILVQIPGLSDTQEALNTIGKTGKLEFARLDSFTDEDVRQKIENGQLTQGSTTV 154 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG--------------- 278 D+ GNQ E ++ + VD + G Sbjct: 155 SDAYGNQLPAETTQPLTVEEGTYTPIVTGSNIERVTVDRASSGGGLYYAVNLQLDADGTK 214 Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG 338 A + ++LDG+V +AP + I GK +I+GN+T + A L +L +G Sbjct: 215 AFADASRDLAPTHGKIVIILDGQVNSAPAVQSEITGGKVEITGNYTQDQANGLKTVLESG 274 Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398 SLP+ + + + VG LG D++ G +AGLVL++L+++V Y G++ ++ + Sbjct: 275 SLPVSFSYAQSQTVGPTLGQDALSSGVLVALAGLVLVMLYLLVFYHGLGMITAAAMAVFA 334 Query: 399 ILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454 +L L LL+ L +L+L +AGIVL IG+A DS+IL ER REE R +S+ + Sbjct: 335 VLYLGLLATLSHFGLFSLSLAGVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASIT 394 Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT-----MGLSILISMFTAISIVRA 509 G T D+++ +L+ + LFF V+GF +T M +++ +F A I Sbjct: 395 GVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALGIMCDIVMMLLFKAPIIRLL 454 Query: 510 MMIFIIRYKKMKSIDINPLSRF-------------------------------------- 531 I ++ + + + Sbjct: 455 APHAIAKHPGFWGVKDSQAASKVYGRLAAAEGEMVETAVSAEAINSAESEAYASRKGGAE 514 Query: 532 -----------FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580 I F+ AR + I+ L + ++ GLN GI+F GG Sbjct: 515 GTEAAQAASKVRGRFIKHDINFLGARKVFLSIAALAMVLCALVIGVRGLNLGIEFVGGTS 574 Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + V VRS + D Q + ++ D+ A V + Sbjct: 575 IEFNETGSVTTDQVRSAFAAAGESDAVIQTTESNGEPGFIVRIANTDASAAAGAATQVAQ 634 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + +GP +I+ ++ +++S + ++IYI IRF++ + AI L Sbjct: 635 SLNLSTDSF---QVSTIGPDWGASIIQSMVIALLVSFVLIIIYIAIRFEYKMGITAIIAL 691 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + DI +G +AL G E N +AA+LT++GYS+ D VVV+ R+ NM+ +F + Sbjct: 692 LHDIILVVGVYALVGREINPNTIAALLTILGYSLYDTVVVFHRISDNMQHSEIKCTFMTM 751 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 + S+N+ RS+ T++ + I VL M ++G + FA M G++ A SSI IA P+ Sbjct: 752 ANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAIACPLF 811 Query: 821 LFIYDWRAKNARI 833 KN R+ Sbjct: 812 AIWKTREPKNVRL 824 >gi|315282443|ref|ZP_07870855.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria marthii FSL S4-120] gi|313613906|gb|EFR87638.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria marthii FSL S4-120] Length = 754 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 188/701 (26%), Positives = 340/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +RI+ +G++E +IQ G +RI +QL G D + R++L T Sbjct: 51 ADGKGTVSKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGITDQAEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + D L+AP ++ + + K +ISG+FT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLAELLNSGALPVKMTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G+VA ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVVASITLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGIS 553 R ++ +++ + + ++ F L F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVRRKDIHNLHEGINSFNLKTHFDRYDFVKHHRLFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + V AN+ + + ++ +L+ + + Sbjct: 461 TAIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLKEIDMPSDDIVFQGS 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + + + V P + +EL + G + Sbjct: 521 GSKTAVISYKGTLSQNDVAKFKDYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 ++++ +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T D ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISTKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 96/258 (37%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAEL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + T + VG + ++ +++ I+ II +A+ I++ ++ + Sbjct: 229 LNS-----GALPVKMTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 VASITLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 85.5 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 79/732 (10%), Positives = 191/732 (26%), Gaps = 38/732 (5%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L L + G+ S++ + N+I + A + ++ Q Sbjct: 58 SKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGITDQAEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S N I + + ++ + + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + ++DP+ L ++ + + + + L +S Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAELLNSGALPVK 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + S G V F M A +I L Sbjct: 238 MTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLPGVVASITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P + + I +R + L + A + + I Sbjct: 418 PGFFAVRRKDIHNLHEGINSFNLKTHFDRYDFVKHHRLFLSIFTAI--VIVGIVILSIFK 475 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 + L R + + + I+ + Sbjct: 476 LNLGIDFASGTRAEVTANQTLTETQIKKDLKEIDMPSDDIVFQGSGSKTAVISYKGTLSQ 535 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ---LGVLANRPVDL 591 D + + SI ++ + + + + V + + Sbjct: 536 NDVAKFKDYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGI 595 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + + S L I I F E + + + + + Sbjct: 596 AAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISTKMQRF 655 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLIL 702 + E + +++ L + + + + + F +G ++++ Sbjct: 656 KTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFS 715 Query: 703 DITKTLGFFALF 714 I + + +F Sbjct: 716 SIFMAMQLWYVF 727 >gi|16803567|ref|NP_465052.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes EGD-e] gi|47097024|ref|ZP_00234597.1| protein-export membrane protein SecDF [Listeria monocytogenes str. 1/2a F6854] gi|224499812|ref|ZP_03668161.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes Finland 1988] gi|224501533|ref|ZP_03669840.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes FSL R2-561] gi|254828239|ref|ZP_05232926.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes FSL N3-165] gi|254829714|ref|ZP_05234369.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes 10403S] gi|254898307|ref|ZP_05258231.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes J0161] gi|254912201|ref|ZP_05262213.1| protein-export membrane protein [Listeria monocytogenes J2818] gi|254936529|ref|ZP_05268226.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes F6900] gi|16410956|emb|CAC99605.1| lmo1527 [Listeria monocytogenes EGD-e] gi|47014606|gb|EAL05566.1| protein-export membrane protein SecDF [Listeria monocytogenes str. 1/2a F6854] gi|258600627|gb|EEW13952.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes FSL N3-165] gi|258609123|gb|EEW21731.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes F6900] gi|293590174|gb|EFF98508.1| protein-export membrane protein [Listeria monocytogenes J2818] Length = 754 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 185/701 (26%), Positives = 339/701 (48%), Gaps = 34/701 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +R++ +G++E +IQ G++RI +QL G D + R++L T Sbjct: 51 ADGKGTVSKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + D L+AP ++ + + K +ISG+FT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLAELLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G++A ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVIASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553 R ++ +++ + + + I F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + V AN+ + + ++ +L+++ + Sbjct: 461 AAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDTIDMPSDDIVFQGS 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + + V P + +EL + G + Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 ++++ +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T D ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F+I + G+V + SSIF+A + + + Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + + + R + + + + + + ++ + Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAEL 228 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 L + + VG + ++ +++ I+ II IA+ I++ ++ + Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 IASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 S + + E + ++ I + +G S I FA + I+V+ ++++ Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399 Query: 815 IAAPILLFIYDWRAKNAR 832 + +L + N + Sbjct: 400 GSRFLLGLLVKSNWLNNK 417 Score = 86.3 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 80/737 (10%), Positives = 197/737 (26%), Gaps = 48/737 (6%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L L + G+ S++ + N+I + A + ++ Q Sbjct: 58 SKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S N I + + ++ + + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + ++DP+ L ++ + + + + L +S Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAELLNSGALPVK 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +++ S G V F M A +I L Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIASITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P + + I +R + + R + +IF + + I Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDF-------VKHHRLFLSIFAAIVIVGIVI 470 Query: 475 VVLFFFGGGAVRGFA-----ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529 + +F G + + + I+ + Sbjct: 471 LSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDTIDMPSDDIVFQGSGSKTAVVSYK 530 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ---LGVLAN 586 D + + SI ++ + + + + V Sbjct: 531 GTLSQNDVAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFE 590 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++ + S L I I F E + + + + + Sbjct: 591 FYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISM 650 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAI 697 + + E + +++ L + + + + + F +G + Sbjct: 651 KMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLV 710 Query: 698 TTLILDITKTLGFFALF 714 +++ I + + +F Sbjct: 711 SSVFSSIFMAMQLWYVF 727 >gi|328465564|gb|EGF36793.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria monocytogenes 1816] Length = 738 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 186/702 (26%), Positives = 338/702 (48%), Gaps = 34/702 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + V + ++ + +RI+ +G++E +IQ G +RI +QL G D R++L T Sbjct: 51 ADGKGTVSKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110 Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 TA++SF + + G N +V K++ + + Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 +V + G + E + D L+AP ++ + + K +ISG+FT E Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 G++A ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + + Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 S + ++G A+ I D N+T LI VLF+FG +++GFA + +SIL+S TA+ Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553 R ++ +++ + + + I F++ + I Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460 Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 I I +L LN GIDF G + V AN+ + + ++ +L+++ + Sbjct: 461 AAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDAINMPSDDIVFQGS 520 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 V + + + V P + +EL + G + Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 ++++ +++YI +RF++Y + AI +L+ D FF++ +E +LT +AAVLT+IGYS Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634 Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 +ND +V DR+R M+ + T + ++K++ +T RS+ T + +VL + ++G Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFG 694 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 I +F+I + G+V + SSIF+A + + + R Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKKR 736 Score = 87.1 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 81/730 (11%), Positives = 200/730 (27%), Gaps = 34/730 (4%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65 + + ++ + ++ I+LGLDL+GG ++ EV D Sbjct: 7 IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L L + G+ S++ + N+I + A +E ++ Q Sbjct: 58 SKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 N N + + + S N I + + ++ + + + + ++ I Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177 Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + ++DP+ L ++ + + + + L +S Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237 Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +++ S G V F M A I L Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L+ +P I G A ++ + + + VG +I Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414 G + ++ F + V SI ++ + L LL Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473 P + + I +R + L + A + ++ + Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFRLN 477 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G A T+ + + AI++ ++F K + Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAINMPSDDIVFQGSGSKTAVVSYKGTLSQND 537 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + + + ++ ++ + + V + ++ Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + S L I I F E + + + + + + + Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704 E + +++ L + + + + + F +G ++++ I Sbjct: 658 KEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717 Query: 705 TKTLGFFALF 714 + + +F Sbjct: 718 FMAMQLWYVF 727 >gi|323485740|ref|ZP_08091076.1| hypothetical protein HMPREF9474_02827 [Clostridium symbiosum WAL-14163] gi|323400920|gb|EGA93282.1| hypothetical protein HMPREF9474_02827 [Clostridium symbiosum WAL-14163] Length = 722 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 176/629 (27%), Positives = 300/629 (47%), Gaps = 14/629 (2%) Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F + + + V + G ++G+ A DPKT + VV Sbjct: 95 VRFPWKSDEKNFNPEEAIAELGETARLTFRDEKGNVLVEGKDVSGSEAVRDPKTGESVVS 154 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 +SFD GA F E T G+ + + +D +++APV+ QAI G A ISG + E A L Sbjct: 155 LSFDHAGAAAFAEATGRLTGQRIGIYMDETLISAPVVRQAITDGTAMISGMNSPEEAKQL 214 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +RAG+LP + + LG+ ++ A + L+LI LFM+ Y G+V+ Sbjct: 215 AEKIRAGALPFSMKTTNYNTISPTLGNQALQSMAAAGLFSLLLICLFMMTYYRLPGIVSC 274 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + L + +S+ T+TLP IAG++L G+AVD+NI+++ERI EE R +V + Sbjct: 275 LTLLFQMSLQVLAISIPQYTITLPGIAGLILSAGMAVDANIIISERISEELRNKMTVKQA 334 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 + G+ A+S++ D NIT +L FFG G + F T+ +LI++F + + RA++ Sbjct: 335 VRRGYKNAFSSVLDGNITTAAVAAILMFFGSGTMLSFGYTLLTGVLINLFAGVWMSRAIL 394 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571 + Y + R + + F + R W + + + L +G+ Sbjct: 395 NSLTEYPAFCKERMFRKKREKKV-----LGFSKKRKWILCFTCCVLLMGTLLSAKNGMKL 449 Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE-KNFLVRLQYQPGDSVA 630 F GG+ L + D V++ +E+ +S Q + + G+ Sbjct: 450 DTQFTGGVILKYTYAQEADPEAVKAGVENELGRPVSVQTSEDPLTGEKKLVLTLAGNRGI 509 Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690 + V + + + T V P I + ++ + V++SA+ +++YI RF Sbjct: 510 LPKEQAQVTDFLNSLGGNFALSETFAVEPYIGAKALKNSVTAVVLSALFIIVYIRFRFSS 569 Query: 691 YFALGA----ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 L A I L+ DI + F +F I N VA LT+IGYS+ND +V+YDR+R+ Sbjct: 570 LSGLAAGMSAILALVHDILIVVFIFGIFRIPVNDAFVAVTLTIIGYSINDTIVLYDRIRE 629 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMA 802 NMK T S L+D+SI ETLGRSV T++ +S+ + ++ I F++P+ Sbjct: 630 NMKEAGTKTSLAGLVDRSITETLGRSVNTALTVVMSIFIVYIFSVIYRIESIQVFSLPLL 689 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G++ SS+ IA P+ + + + Sbjct: 690 AGLISGCYSSVCIAGPLWAYWEERKLTKN 718 Score = 52.0 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 48/166 (28%), Gaps = 16/166 (9%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+N + + ++ + + A+ + G+D+RGG V E Sbjct: 1 MKNKKNHIWIACIVIAVFVYAAIFGCGD--------DVKGIREMRFGIDIRGGVEAVFEP 52 Query: 61 DED-DFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRF-----KENIA 112 D G L+ D + L + I ++ + + + F E Sbjct: 53 AGDYRPSEGELESARDVIEGRLDAKNILDREVTVDKKAGHVIVRFPWKSDEKNFNPEEAI 112 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 ++ + + + + + + ++ + Sbjct: 113 AELGETARLTFRDEKGNVLVEGKDVSGSEAVRDPKTGESVVSLSFD 158 >gi|157693168|ref|YP_001487630.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus pumilus SAFR-032] gi|157681926|gb|ABV63070.1| RND superfamily resistance-nodulation-cell division:proton (H+) antiporter [Bacillus pumilus SAFR-032] Length = 742 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 195/697 (27%), Positives = 342/697 (49%), Gaps = 30/697 (4%) Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 D++ + + ++E + +R + +G+SE I G++RI +QL G +D +R R++L T A++ Sbjct: 54 DKITNSVLVSTVEALNRRANVLGVSEPNISIEGNNRIRVQLAGVKDQNRAREILSTEAQL 113 Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272 SF G + + V++ G V Sbjct: 114 SFRDTNDKELLNGADLVENSAKQTFSQTNEPIVTVKLKDAKKFGDVTR--------KVAA 165 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 + + + + K D + ++AP +NQ I S QI G FT++ A LA Sbjct: 166 MAPNNQLVIWLDYNKGDSFKKEVSKSDHKYVSAPNVNQEINSSDVQIEGKFTVQEAKDLA 225 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392 ++L AG+LP+KL +V A G ++ + A + G+ LI LFM+ Y GL+A Sbjct: 226 SILNAGALPVKLTEKYSTSVSAQFGEQALNETVFAGIVGIALIFLFMLFYYRIPGLIAVI 285 Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452 ++ + +TL + +GA LTLP IA ++LG+G+AVD+NI+ ERI+EE + +SV + Sbjct: 286 TLSTYIYITLQVFDWMGAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAF 345 Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 G R+++TIFD+N+T++IA VLFFFG +V+GFA + LSIL S TA+ + R ++ Sbjct: 346 RSGNRRSFATIFDANLTSIIAGGVLFFFGTSSVKGFATMLILSILTSFITAVFLSRFLLG 405 Query: 513 FIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559 ++ + + F+ R + SI +I Sbjct: 406 LLVESRALDRKKGWFGVRQKDIIDIHETTENTEPKTPFDKWDFVSKRKGFMIFSIAITIA 465 Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 I +L LN GIDF G ++ + ++ + + + + L + S ++N Sbjct: 466 GIIVLSIFKLNAGIDFASGTRVDIQSDHKLSTAQIEQDFHKLDLDTDSVVLSGQKENQAA 525 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 + V + K T N V P + +EL R + +II++I Sbjct: 526 ARFVGVPNKEKIAEVKDYFK------DKYGTEPNVSTVSPTVGKELARNALYAIIIASIG 579 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 ++IY+ IRF++ A+ AI +L+ D + FF++ +E ++T +AA+LT+IGYS+ND +V Sbjct: 580 IIIYVSIRFEYKMAIAAIASLLYDAFFIVAFFSITRLEVDVTFIAAILTVIGYSINDTIV 639 Query: 740 VYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 +DR+R+ MK +++ S+ +T RS+ T + I V+ + ++G + I +F Sbjct: 640 TFDRVREQMKKRKPKTVEDLSYIVNLSLQQTFTRSINTVLTVVIVVIALLIFGSASITNF 699 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833 ++ + G++ SS++IAA I L K A+I Sbjct: 700 SLALLVGLLTGVYSSLYIAAQIWLMWKGRDLKKPAKI 736 Score = 57.8 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 18/133 (13%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ IL + + L+ L + + ++LGLDL+GG ++ +V Sbjct: 1 MKKGR---ILAFFLVVL-LIGTGVGLLTKPVA---------KDMTLGLDLQGGFEVLYDV 47 Query: 61 ----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115 ED N L + L G+ ++ + N+I + A + + + + Sbjct: 48 HPVKKEDKITNSVLVSTVEALNRRANVLGVSEPNISIEGNNRIRVQLAGVKDQNRAREIL 107 Query: 116 TLFLQGVNSKLNV 128 + Q N Sbjct: 108 STEAQLSFRDTND 120 >gi|160893376|ref|ZP_02074162.1| hypothetical protein CLOL250_00926 [Clostridium sp. L2-50] gi|156864951|gb|EDO58382.1| hypothetical protein CLOL250_00926 [Clostridium sp. L2-50] Length = 747 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 187/692 (27%), Positives = 324/692 (46%), Gaps = 22/692 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V + + ++ ++ +++RID +E + G+ +I ++PG D + + Sbjct: 51 VTYEIQDEDYSDADVQDTIYKLQKRIDSH-TTEHNVYSEGNGKITAEIPGVTDADAILED 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 L K+ F L D + +G Sbjct: 110 LSIEGKLEFLDPENYELWSQGKDYTPALTGDDIKGADAKIDSTETGDD------------ 157 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 VV +SF GA++F +VT N+GK + +V DG V++AP + QAI G A I+ T Sbjct: 158 --NVVQLSFTTAGAQKFADVTTANVGKIVYIVYDGEVVSAPTVQQAITDGNAVINSISTY 215 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A LA +R G+LP+ L V VGA LGS+++ A + G++ I + MI ++ Sbjct: 216 EEADSLATTIRIGALPLTLKQVRSNIVGATLGSEAVSTTIKAGIIGIICIFIIMICVFRI 275 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 GL+A S+ L + L +++L TLTLP +AGI+L +G+AVD+N+++ RI+EE Sbjct: 276 PGLIASLSLTLYTFMILLVMNLFNVTLTLPGLAGIILSVGMAVDANVVIFTRIKEELATG 335 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 SV S+ GF A S I D N+T LIA +VL FG G ++GFAIT+ + I++S+FTA+ Sbjct: 336 ASVKQSVKAGFHNALSAIIDGNVTTLIAALVLGIFGTGTIKGFAITLAIGIVLSVFTALV 395 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + + ++ ++ + ++ V + + Sbjct: 396 VSQLVLNALVTLGVNDVKFFGKAKEPGKVNFVKGGKYCIIASVLVIVIGFCFMPIFAKTK 455 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL-----ESLQIGDISFQNFDGEKNFLVR 620 LN IDF GG + ++ LS ++ E+ I + + Sbjct: 456 GSALNLSIDFAGGTSITAEFDKAYSLSEAEKDIVPVIAEAAGISEADISVQTVSGTNEIV 515 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + + L V ++E + + + I G S ++ R + V ++A+ M Sbjct: 516 FKTTELTTQGDDSQLTKVTAALSEKLGATVTNSDNISG-SASSDMTRDAFLSVALAAVLM 574 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 LIYI IRFK F + A+ L D+ + L + T +A +LT+ GYS+N ++ Sbjct: 575 LIYIVIRFKDVKFGVSAVLALCHDVAMVFVLYILLRLSVGNTCIACMLTIFGYSINATII 634 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799 V+DR+R+N+ T ++ +++ SIN+T+ R++YTS+ F+++ + V G + I FA Sbjct: 635 VFDRIRENIANAGTKKDYKQIVNLSINQTITRNIYTSLTTFVTIFVLYVMGVAAIKEFAF 694 Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + G+V+ A SSI + P+ + K Sbjct: 695 TLMAGVVIGAYSSICVTGPLWYYFKTGFGKKK 726 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 50/411 (12%), Positives = 122/411 (29%), Gaps = 18/411 (4%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W++IL+ ++ + +AL + ISLGLDL+GG + E+ Sbjct: 6 KKAIWVLILFLLVLAGSIYVALFGVGDRGKA---------KYISLGLDLKGGLSVTYEIQ 56 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 ++D+ + +Q +L+ + + KIT + I + +++ + Sbjct: 57 DEDYSDADVQDTIYKLQKRIDSHTTEHNVYSEGNGKITAEIPGVTDADAILEDLSIEGKL 116 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + E + + Q ++ Sbjct: 117 EFLDPE---NYELWSQGKDYTPALTGDDIKGADAKIDSTETGDDNVVQLSFTTAGAQKFA 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 ++ I + + ++ + +R Sbjct: 174 DVTTANVGKIVYIVYDGEVVSAPTVQQAITDGNAVINSISTYEEADSLATTIRIGALPLT 233 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 L + + I G L + K + F M ++ L + Sbjct: 234 LKQVRSNIVGATLGSEAVSTTIKAGIIGIICIFIIMICVFRIPGLIASLSLTLYTFMILL 293 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 V+ + +P I A ++ L ++ + G +I Sbjct: 294 VMNLFNVTLTLPGLAGIILSVGMAVDANVVIFTRIKEELATGASVKQSVKAGFHNALSAI 353 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G + +++ +F G + F+I L + + L++ + L + Sbjct: 354 IDGNVTTLIAALVLGIF------GTGTIKGFAITLAIGIVLSVFTALVVSQ 398 >gi|70726285|ref|YP_253199.1| bifunctional preprotein translocase subunit SecD/SecF [Staphylococcus haemolyticus JCSC1435] gi|68447009|dbj|BAE04593.1| protein-export membrane protein SecDF [Staphylococcus haemolyticus JCSC1435] Length = 761 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 175/697 (25%), Positives = 314/697 (45%), Gaps = 24/697 (3%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 ++ A++ + + R++ +G+SE IQ RI +QL G +DP R++L + A Sbjct: 53 GDKKIDEKALQSTARTLENRVNVLGVSEPHIQVEDPDRIRVQLAGVKDPDEARKILSSQA 112 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 ++ G + + Q E V + + K Sbjct: 113 NLTIRDANDKVKLTGKDIVQGSAK-QEFKQGTNEPAVTFKLKDRAKFKKVTEEISKKQEN 171 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 + + ++ ++ IN G +E A Sbjct: 172 MMVVW-LDYKKGDSYHKELEKPEDKRKYVSAASVDQPINSDSVEISGGFHGQQGVERAKQ 230 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 +A +L AGSLP+ L + +VGA G D++ K A G+ +I LFM+ Y GLVA Sbjct: 231 IAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASAIGVAIIYLFMVGFYRLPGLVA 290 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 ++ + + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 291 IIALTVYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQ 350 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R + Sbjct: 351 AYSKANKSSFLTIFDSNLTTVIAAGVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGL 410 Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFS 557 + ++ K D F++ +G SIL Sbjct: 411 LSLLVSSNYFKKKFWLFGVSKKNRHDINEGVDVHDLKTSYEKWNFVKLAKPLIGFSILIL 470 Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617 I I +L LN GIDF G ++ + ++ + V ++ + + Q + Sbjct: 471 IVGIVILSIFKLNLGIDFSAGTRVDIDSDTKLSQPKVERTMKDMGLTPDQVQINGSDNKQ 530 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + + + V V P I +EL + + +I +A Sbjct: 531 ATVQFKKDLSKNEVVELNKKV------NNEYGHKPTVNTVSPMIGQELAKNAMKALIYAA 584 Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737 I ++IY+ +RF+W L ++ L+ D+ + F+L +E ++T +AAVLT++GYS+ND Sbjct: 585 IGIIIYVSLRFEWRMGLSSVLALLHDVFMIVALFSLLRLEVDITFIAAVLTIVGYSINDT 644 Query: 738 VVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 +V +DR+R+N+ ++++SI +T+ RSV T + + V+ + ++G S + Sbjct: 645 IVTFDRVRENLHRIKVITKPEQIDYIVNRSIRQTMTRSVNTVLTVIVVVVAILIFGASSL 704 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +F++ + G+V SS+FIA P+ + + K A Sbjct: 705 FNFSLALLIGLVSGVFSSVFIAVPLWGIMKKRQLKKA 741 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 78/178 (43%), Gaps = 4/178 (2%) Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 VG + ++ + K I I + +++ ++ L AI L + I TL F Sbjct: 250 NSVGAQFGQDALDKTIFASAIGVAIIYLFMVGFYRLP-GLVAIIALTVYIYLTLVAFNFI 308 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 L +AA++ +G +V+ +++Y+R++ +++ + + K+ + Sbjct: 309 SGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI---GRTLKQAYSKANKSSFLTIFD 365 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++ I+ + +G S + FA + GI++ +++F++ +L + + Sbjct: 366 SNLTTVIAAGVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLLSLLVSSNYFKKK 423 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 43/385 (11%), Positives = 101/385 (26%), Gaps = 27/385 (7%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65 + + I + +L ++++ ++LGLDL+GG ++ +V Sbjct: 7 IIAFILIVAVLFVGMGLTYKNVV---------KNVNLGLDLQGGFEVLYQVKPLDGDKKI 57 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124 LQ + L + + G+ ++ ++I + A + + ++ Sbjct: 58 DEKALQSTARTLENRVNVLGVSEPHIQVEDPDRIRVQLAGVKDPDEARKILSSQANLTIR 117 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 N K N V +++ ++ ++I + + + Sbjct: 118 DANDKVKLTGKDIVQGSAKQEFKQGTNEPAVTFKLKDRAKF--KKVTEEISKKQENMMVV 175 Query: 185 GSHRILIQLPG--EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + P R+ + + GF R + L Sbjct: 176 WLDYKKGDSYHKELEKPEDKRKYVSAASVDQPINSDSVEISGGFHGQQGVERAKQIAELL 235 Query: 243 VEDKVEIS---------GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 + + G + V I + M I Sbjct: 236 NAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASAIGVAIIYLFMVGFYRLPGLVAIIALT 295 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 + + L +P A + G A I+ L I + + + Sbjct: 296 VYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQAYSKA 355 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLF 378 +I+ V ++ F Sbjct: 356 NKSSFLTIFDSNLTTVIAAGVLFFF 380 >gi|323693080|ref|ZP_08107299.1| SecD/SecF family protein-export membrane protein [Clostridium symbiosum WAL-14673] gi|323502834|gb|EGB18677.1| SecD/SecF family protein-export membrane protein [Clostridium symbiosum WAL-14673] Length = 722 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 176/629 (27%), Positives = 300/629 (47%), Gaps = 14/629 (2%) Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F + + + V + G ++G+ A DPKT + VV Sbjct: 95 VRFPWKSDEKNFNPEEAIAELGETARLTFRDEKGNVLVEGKDVSGSEAVRDPKTGESVVS 154 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 +SFD GA F E T G+ + + +D +++APV+ QAI G A ISG + E A L Sbjct: 155 LSFDHAGAAAFAEATGRLTGQRIGIYMDETLISAPVVRQAITDGTAMISGMNSPEEAKQL 214 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +RAG+LP + I + LG+ ++ A + L+LI LFM+ Y G+V+ Sbjct: 215 AEKIRAGALPFSMKITNYNTISPTLGNQALQSMAAAGLFSLLLICLFMMTYYRLPGIVSC 274 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ + L + +S+ T+TLP IAG++L G+AVD+NI+++ERI EE R +V + Sbjct: 275 LTLLFQMSLQVLAISIPQYTITLPGIAGLILSAGMAVDANIIISERISEELRNKMTVKQA 334 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 + G+ A+S++ D NIT +L FFG + F T+ +LI++F + + RA++ Sbjct: 335 VRRGYKNAFSSVLDGNITTAAVAAILMFFGSETMLSFGYTLLTGVLINLFAGVWMSRAIL 394 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571 + Y + R + + F + R W + + + L +G+ Sbjct: 395 NSLTEYPAFCKERMFRKKREKKV-----LGFSKKRKWILCFTCCVLLMGTLLSAKNGMKL 449 Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE-KNFLVRLQYQPGDSVA 630 F GG+ L + D V++ +E+ +S Q + + G+ Sbjct: 450 DTQFTGGVILKYTYAQEADPEAVKAGVENELGRPVSVQTSEDPLTGEKKLVLTLAGNRGI 509 Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690 + V + + + T V P I + ++ + V++SA+ +++YI RF Sbjct: 510 LPKEQAQVTDFLNSLGGNFALSETFAVEPYIGAKALKNSVTAVVLSALFIIVYIRFRFSS 569 Query: 691 YFALGA----ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 L A I L+ DI + F +F I N VA LT+IGYS+ND +V+YDR+R+ Sbjct: 570 LSGLAAGMSAILALVHDILIVVFIFGIFRIPVNDAFVAVTLTIIGYSINDTIVLYDRIRE 629 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMA 802 NMK T S L+D+SI ETLGRSV T++ +S+ + ++ I F++P+ Sbjct: 630 NMKEAGTKTSLAGLVDRSITETLGRSVNTALTVVMSIFIVYIFSVIYRIESIQVFSLPLL 689 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G++ SS+ IA P+ + + + Sbjct: 690 AGLISGCYSSVCIAGPLWAYWEERKLTKN 718 Score = 50.5 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 48/166 (28%), Gaps = 16/166 (9%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+N + + ++ + + A+ + G+D+RGG V E Sbjct: 1 MQNKKNHIWIACIVIAVFVYAAIFGCGD--------DVKGIREMRFGIDIRGGVEAVFEP 52 Query: 61 DED-DFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRF-----KENIA 112 D G L+ D + L + I ++ + + + F E Sbjct: 53 AGDYRPSEGELESARDVIEGRLDAKNILDREVTVDKKAGHVIVRFPWKSDEKNFNPEEAI 112 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 ++ + + + + + + ++ + Sbjct: 113 AELGETARLTFRDEKGNVLVEGKDVSGSEAVRDPKTGESVVSLSFD 158 >gi|332299590|ref|YP_004441511.1| protein-export membrane protein SecD [Porphyromonas asaccharolytica DSM 20707] gi|332176653|gb|AEE12343.1| protein-export membrane protein SecD [Porphyromonas asaccharolytica DSM 20707] Length = 976 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 191/805 (23%), Positives = 370/805 (45%), Gaps = 42/805 (5%) Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNS 124 + + + L++ + + G+ ++++ Q +I + + + + + Sbjct: 168 SSAIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFW 227 Query: 125 KLNV---------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME-------IIR 168 + D L ++ + + + + + Sbjct: 228 RTYTYDEIASDLIDANNRLTAMANGNDLMPADTAATAADSTATVADSTAVQKPATTGVED 287 Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228 ++ ++ + R + E +Q + M P + + Sbjct: 288 VLFSKLNMTNRGTVVGYARRADLDKIDEMLEEAQKQKIIREDLMLLWGNSPIKNPQTGKE 347 Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + + + + + D ++PVV ++ ++ GAR++ +T D Sbjct: 348 TDIYELYAIRGNRNALPDLGGEVVTTARSEVRNDLGQNRPVVTMTMNDEGARKWARLTGD 407 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 NIG+ +A+VLDG V +AP +N I G+++ISG FT++ LA +L +G + + I + Sbjct: 408 NIGRNIAIVLDGVVYSAPNVNSEITGGRSEISGAFTVDETTDLANVLNSGRMEASVEIEQ 467 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSL 407 E VG LGS+SI G + + ++L++++M + YG GL+AD ++ LN TL +L+ Sbjct: 468 ESVVGPTLGSESIQAGIISFIIAIILLMIYMCLAYGLIPGLIADGALILNSFFTLGVLAS 527 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 + LTL IAG+VL +G+AVD+NIL+ ERI+EE R +S+ ++ G+ A+S IFDSN Sbjct: 528 FHSVLTLSGIAGLVLTLGMAVDANILIFERIKEELRAGKSMTRAIQDGYGNAFSAIFDSN 587 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 +T +I VL+ FG G +RGFA T+ + ++ S TA+ + R ++ + + +M + Sbjct: 588 LTTVITGGVLYAFGTGPIRGFATTLIIGVIASFITAVFLTRIVVEALDKKGRMDKVTYTT 647 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 L+ + R G I + + F GLN GI+F GG V + Sbjct: 648 FLTRNLLNNPTYKILE-NRNKGFIIFGSILVLGLIGSFVWGLNRGIEFSGGRNYIVAFEQ 706 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI----- 642 PV + VR L + + E N + ++ E++ Sbjct: 707 PVSSAEVREALMQPLDEHVLVTSIGTEGNQVRISTNYGIGMTQESEDEELLVMGKVFEGV 766 Query: 643 ---------TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692 + + + +++ V P +S+++ R+ ++ V++S I M +YI +RF+ W F Sbjct: 767 QKFLPQGTTQQQFVDNYVVSSQRVSPSMSKDISRQAVIAVVLSLIFMGLYILLRFRNWAF 826 Query: 693 ALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 +LGA ++ + + L F +E + +AA+L +IGYS+ND VVV+DR+R+ Sbjct: 827 SLGAFASVATTTLLIVASYILLWQIMPFTMELDQNFIAALLAIIGYSINDVVVVFDRVRE 886 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 + Y + ++++++N TL R+V TS + F+ V + + GG+ + SF + GIV Sbjct: 887 TLHNYPNR-DEKLVMNEALNSTLARTVQTSFSTFLVVFIIFILGGASMRSFTFALLIGIV 945 Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831 ++F+A+PI + + + + Sbjct: 946 YGIFCTLFVASPIAYLVRNKQQQRK 970 Score = 54.3 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 17/202 (8%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 +I LGLDL+GG ++VL+V+ D + + ++ N Sbjct: 66 ARNQQIGLGLDLKGGMNVVLKVNGRDLLRNLSGHNQSPAF-----IEAIDKAAKEGSNDF 120 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 +F ++ N + + ++++E+ VL + Sbjct: 121 VGTFV------KAYKELEPSGSLAVIFSNGPLRDVISPKSSDQEVIEVLQEKYS-----S 169 Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 AI+ ++ +++ RID+ G+ + G RIL++LPG +P R+R+LL +A + F + Sbjct: 170 AIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFWRT 229 Query: 218 LPNNSKKGFMFGVRFLRDSDGN 239 + + + N Sbjct: 230 YTYDEIASDLIDANNRLTAMAN 251 >gi|239983500|ref|ZP_04706024.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces albus J1074] Length = 766 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 204/715 (28%), Positives = 361/715 (50%), Gaps = 30/715 (4%) Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 + I + + + + ++++E++RQR+D +G++E + R GS RI+++LPG Q Sbjct: 36 SGGTRIVLQAQEAQGRTPDAESTDRALEVLRQRVDALGVAEPQLVRSGSDRIVVELPGVQ 95 Query: 198 DPSRLRQLLGTTAKMSFHKV--LPNNSKKGFMFGVRFLRDSDGNQYLVE-DKVEISGIHL 254 DP +++G TA+++FH V + G R L D D +E ++G + Sbjct: 96 DPREAAEVIGRTAQLTFHPVRGEAEKAAPQAEDGSRALADPDRPDAFLELGPTALTGEGV 155 Query: 255 NGATANFDPKTHK-PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------ 301 + A +FD + + V +SF++ A + +T + Sbjct: 156 SDARPDFDAASGEGWAVTLSFEKKAAGAWTRLTGEAACAAPGDPGRRVAIVLDDRVVSAP 215 Query: 302 -VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + I G QI+G F E A LAA+++ G+LP+ + +VE+ VG LG+D+ Sbjct: 216 GMRETVPCGTGITGGSTQITGGFDAEGARELAALVKGGALPLPVEVVEQSTVGPSLGADA 275 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G A + GL +F+ +Y GL+A ++ L +++ A + LGATLT+P IAG Sbjct: 276 IRAGAWAALIGLACTAVFITAVYRLLGLLATVALSLYGLISYAAIVALGATLTMPGIAGF 335 Query: 421 VLGIGLAVDSNILVNERIREEN----RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 VL +G+AVD+N+LV ER REE R+ + + L GF++A+S + DSN+T LIA + Sbjct: 336 VLAVGMAVDANVLVFERAREEYGQASRRPKDLRRPLARGFAKAWSAVLDSNVTTLIAAGL 395 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFF 532 LF G V+GF +T+ + +L SM +A+ I R + + + ++ + R Sbjct: 396 LFALATGPVKGFGVTLAVGVLASMVSALVITRVLADWALGRGLVRRRPQATGMAGKGRLR 455 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 + + MR+ + +S + ++ + GL G++F GG Q RPVD Sbjct: 456 TRLEQRPPRLMRSGSRWLLLSGGLLLVALAGVGVRGLELGVEFTGGRQTQYATERPVDAE 515 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 R+ + + + Q D + LV ++ P + + V+ + E T++ Sbjct: 516 TARAAVSAAGFPEAVVQRADQDGASLVTVRTGPLEDAEE----RRVRAALAEHGGEVTVE 571 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 ++VGP + +EL K ++ + ++ A L+Y+ +RF+ AL A+ ++ D+ +G FA Sbjct: 572 RDDLVGPSLGQELRDKAVLALAVAVGAQLVYLTVRFRGTLALAAVVAMVQDVLLVVGLFA 631 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G + +AA+LT++GYSVND VVV+D + ++ S + L D ++ +TL R+ Sbjct: 632 WLGKPVDSVFLAALLTVVGYSVNDTVVVFD-RLRELRRLRPSAPWETLGDLAVGQTLPRT 690 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 V T + A +L +A+ GG + FA+ + GI V S+IF A P+ + + R Sbjct: 691 VNTGLGAVFVLLALALSGGGTLTDFAVALLAGITVGIGSTIFTAMPLAVRLERRR 745 Score = 127 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 66/180 (36%), Gaps = 2/180 (1%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VGP + + IR G +I ++I ++ L A L L + Sbjct: 264 QSTVGPSLGADAIRAGAWAALIGLACTAVFITAVYRL-LGLLATVALSLYGLISYAAIVA 322 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRS 772 G + +A + +G +V+ V+V++R R+ + R + + + Sbjct: 323 LGATLTMPGIAGFVLAVGMAVDANVLVFERAREEYGQASRRPKDLRRPLARGFAKAWSAV 382 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + +++ I+ + + F + +A G++ + S++ I + + R Sbjct: 383 LDSNVTTLIAAGLLFALATGPVKGFGVTLAVGVLASMVSALVITRVLADWALGRGLVRRR 442 >gi|266621981|ref|ZP_06114916.1| putative protein-export membrane protein [Clostridium hathewayi DSM 13479] gi|288866313|gb|EFC98611.1| putative protein-export membrane protein [Clostridium hathewayi DSM 13479] Length = 724 Score = 288 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 179/623 (28%), Positives = 310/623 (49%), Gaps = 16/623 (2%) Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT--HKPVVDISF 274 V + + ++G + A + K +VD++F Sbjct: 89 VDIPGVSDANAILEELGKPGSLIFVDEAGQTILNGNQVATAKPVITDENGIKKYMVDLTF 148 Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334 + G F + T N+GK +A++ DG++ + PV+N+ I G+ QISG + E A LA+ Sbjct: 149 TDDGKTVFADATTKNVGKRIAIIYDGKIYSNPVVNEPITQGQCQISGMVSYEEAETLAST 208 Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394 +R GSL ++L + VGA LG ++I A G ++ +FM+++Y GL A ++ Sbjct: 209 IRIGSLSLELEELRSNVVGAKLGQEAIATSLKAGAIGFGIVAVFMLLVYLVPGLAAVIAL 268 Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454 + V + L LLS TLTLP +AGI+L IG+AVD+N+++ RI+EE ++V ++ Sbjct: 269 SIYVGVILILLSAFSVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGLGKTVQSAIKS 328 Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 GF++A S I D N+T LIA VLF+ G G V+GFA T+ + I++SM TA+ I + ++ + Sbjct: 329 GFNKALSAIIDGNVTTLIAAGVLFWRGSGTVKGFASTLAIGIVLSMITALFITKFVLNTL 388 Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL----- 569 ++ + D I F+ R +S++ + + L + Sbjct: 389 F------NLGFQDPKFYGTKTDKKTIDFLGKRKIWFAVSLVVIVIGLGGLVINKTQTGDI 442 Query: 570 -NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 NY ++FKGG V N + L + S + + +K + Sbjct: 443 LNYSMEFKGGTSTNVTFNEDMTLDEISSKVVPVVENVTGDAQVQTQKVAGTNEVIIKTRT 502 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + + + E + IS+E+ I+ VII+ I ML+YIW+RF Sbjct: 503 LTVEERQALDQAMVDNFGVEAEKITAESISGAISKEMKEDAIIAVIIATICMLLYIWLRF 562 Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 K FA A+ L+ D+ L F+AL T +A +LT++GYS+N +V++DR+R+N Sbjct: 563 KDIKFAGSAVLALLHDVLVVLAFYALLKWSVGSTFIACMLTIVGYSINATIVIFDRIREN 622 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 +K+++ + ++++ SI +T RS+ TS+ F+ V + + G S I FA+P+ GIV Sbjct: 623 LKVHSK-LELAEIVNMSITQTFTRSINTSLTTFVMVFVLFLLGVSSIREFALPLMVGIVC 681 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 SS+ I + + ++ K Sbjct: 682 GTYSSVCITGSLWYVMTVYKNKR 704 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 83/180 (46%), Gaps = 4/180 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +VG K+ +E I + I + +++ + + L A+ L + + L + Sbjct: 222 RSNVVGAKLGQEAIATSLKAGAIGFGIVAVFMLLVY-LVPGLAAVIALSIYVGVILILLS 280 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + L VA ++ IG +V+ V+++ R+++ + L + + I N+ L Sbjct: 281 AFSVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGL---GKTVQSAIKSGFNKALSAI 337 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+ + G + FA +A GIV++ +++FI +L +++ ++ + Sbjct: 338 IDGNVTTLIAAGVLFWRGSGTVKGFASTLAIGIVLSMITALFITKFVLNTLFNLGFQDPK 397 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 60/199 (30%), Gaps = 14/199 (7%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M++N ++ +I + + N I LGLDL GG + + Sbjct: 1 MKSNKGKGLIGLIIALALVGLFGYFGYTTM-----------NDIKLGLDLAGGVSITYQA 49 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 E++ + +L+ ++ ++ N+I + I +++ Sbjct: 50 KEENPSAEDMSDTIYKLQQRVQNYSTEAEVYQEGSNRINVDIPGVSDANAILEELGKPGS 109 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + + + +L V++ N + + + + D + Sbjct: 110 LIFV---DEAGQTILNGNQVATAKPVITDENGIKKYMVDLTFTDDGKTVFADATTKNVGK 166 Query: 181 IQRLGSHRILIQLPGEQDP 199 + + P +P Sbjct: 167 RIAIIYDGKIYSNPVVNEP 185 >gi|291518414|emb|CBK73635.1| protein translocase subunit secF/protein translocase subunit secD [Butyrivibrio fibrisolvens 16/4] Length = 694 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 193/689 (28%), Positives = 330/689 (47%), Gaps = 17/689 (2%) Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 + ++ I ++ +E+ + R+G RI +++PG D + L + LGT + F Sbjct: 1 MADTILKLQQRIENDLGEESATTEANVYRVGDDRITVEIPGVSDANALLEELGTPGTLYF 60 Query: 215 HKVLPNNSKKGFMFGV------RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH-- 266 N + + +G ++ + D + V +G + A Sbjct: 61 IAQKDNEGNENYSYGTTEDGKPGYVLNYDIQTLMDNGSVICTGKEVTAAQGRAQQDQTTS 120 Query: 267 --KPVVDISFDEMGARRFFEVT--RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 K VV + F++ G + F + T G+ + + DG+ ++ P +N+AI SG +ISG Sbjct: 121 ATKYVVTLQFNDEGTKAFGDATTVAAVAGETIGIYYDGQFVSVPKVNEAITSGNCEISGM 180 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 ++E A LA+ +R G L I+L +E + VGA LG+D++ A GL L+++F+I++ Sbjct: 181 SSMEEAEKLASYIRIGGLDIELKELESQVVGAQLGADALRTSLIAAGVGLALVMVFLIIM 240 Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 Y G+ A ++ L + +++L TLTLP IAG++L IG+AVD+N++V R+REE Sbjct: 241 YLVPGVTASLALALYTAMLVSILKAFDITLTLPGIAGMILSIGMAVDANVIVFARVREEI 300 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 + + V +++ GFS+A S I D NIT LIA VL G G V+GFAIT+ L +++SMFT Sbjct: 301 KSGRPVVSAIETGFSKALSAILDGNITTLIAAAVLGILGSGTVKGFAITLALGVVLSMFT 360 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 A+ I R ++ + + ++ Sbjct: 361 ALVITRILINSFYALGIRSPKAYGEAKEPSKFDFVGKKAVFIGISVAIIAAGFITMGVFK 420 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES--LQIGDISFQNFDGEKNFLVR 620 GLNY ++F GG V N L+ + + + + IS + Sbjct: 421 AKSGSGLNYSLEFLGGTSTTVDFNETYSLADLDAKVVPEIAKTLGISEGSIQTTTVDGSN 480 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 +++ + + ++ +G IS E+ + + VI++ + M Sbjct: 481 QAIFKTRTLSLEERTSLNEMFENNYNVKDESITSQSIGSTISGEMRSQSTIAVIVAVLCM 540 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 L+YIW RFK FA AI L+ D+ L ++ I +A +LT+IGYSVND +V Sbjct: 541 LVYIWFRFKDIRFASSAIIALVHDVLIVLALYSFARISVGAAFIACMLTVIGYSVNDTIV 600 Query: 740 VYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 V+DR+R+N K + + + L ++S+ +TL RS+ TS+ I VL + + G S I F Sbjct: 601 VFDRIRENHKAIRIENAETLKTLCNESLAQTLSRSISTSITTAIMVLMLLILGVSSIREF 660 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826 A+P+ G++ SSIFIA + + Sbjct: 661 ALPLLAGVIAGTYSSIFIATQLWYILKLK 689 Score = 124 bits (310), Expect = 8e-26, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 93/248 (37%), Gaps = 4/248 (1%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 ++ V + + G S + +I Sbjct: 138 FGDATTVAAVAGETIGIYYDGQFVSVPKVNEAITSGNCEISGMSSMEEAEKLASYIRIGG 197 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 + +++VG ++ + +R ++ + +++++ I + + A L L Sbjct: 198 LDIELKELESQVVGAQLGADALRTSLIAAGVGLALVMVFLIIMY-LVPGVTASLALALYT 256 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 + F I L +A ++ IG +V+ V+V+ R+R+ +K + I+ Sbjct: 257 AMLVSILKAFDITLTLPGIAGMILSIGMAVDANVIVFARVREEIK---SGRPVVSAIETG 313 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 ++ L + ++ I+ + + G + FAI +A G+V++ +++ I ++ Y Sbjct: 314 FSKALSAILDGNITTLIAAAVLGILGSGTVKGFAITLALGVVLSMFTALVITRILINSFY 373 Query: 825 DWRAKNAR 832 ++ + Sbjct: 374 ALGIRSPK 381 >gi|313887470|ref|ZP_07821159.1| export membrane protein SecD [Porphyromonas asaccharolytica PR426713P-I] gi|312923112|gb|EFR33932.1| export membrane protein SecD [Porphyromonas asaccharolytica PR426713P-I] Length = 976 Score = 287 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 192/805 (23%), Positives = 371/805 (46%), Gaps = 42/805 (5%) Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNS 124 + + + L++ + + G+ ++++ Q +I + + + + + Sbjct: 168 SSAIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFW 227 Query: 125 KLNV---------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME-------IIR 168 + D L +++ + + + + + Sbjct: 228 RTYTYDEIASDLIDANNRLTAMANGNDLTPADTAATAADSTATVADSTAVQKPATTGVED 287 Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228 ++ ++ + R + E +Q + M P + + Sbjct: 288 VLFSKLNMTNRGTVVGYARRADLDKIDEMLEEAQKQKIIREDLMLLWGNSPIKNPQTGKE 347 Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + + + + + D ++PVV ++ ++ GAR++ +T D Sbjct: 348 TDIYELYAIRGNRNALPDLGGEVVTTARSEVRNDLGQNRPVVTMTMNDEGARKWARLTGD 407 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 NIG+ +A+VLDG V +AP +N I G+++ISG FT++ LA +L +G + + I + Sbjct: 408 NIGRNIAIVLDGVVYSAPNVNSEITGGRSEISGAFTVDETTDLANVLNSGRMEASVEIEQ 467 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSL 407 E VG LGS+SI G + + ++L++++M + YG GL+AD ++ LN TL +L+ Sbjct: 468 ESVVGPTLGSESIQAGIISFIIAIILLMIYMCLAYGLIPGLIADGALILNSFFTLGVLAS 527 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 + LTL IAG+VL +G+AVD+NIL+ ERI+EE R +S+ ++ G+ A+S IFDSN Sbjct: 528 FHSVLTLSGIAGLVLTLGMAVDANILIFERIKEELRAGKSMTRAIQDGYGNAFSAIFDSN 587 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 +T +I VL+ FG G +RGFA T+ + ++ S TA+ + R ++ + + +M + Sbjct: 588 LTTVITGGVLYAFGTGPIRGFATTLIIGVIASFITAVFLTRIVVEALDKKGRMDKVTYTT 647 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 L+ + R G I + + F GLN GI+F GG V + Sbjct: 648 FLTRNLLNNPTYKILE-NRNKGFIIFGSILVLGLIGSFVWGLNRGIEFSGGRNYIVAFEQ 706 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV--------- 638 PV + VR L + + E N + ++ E++ Sbjct: 707 PVSSAEVREALMQPLDEHVLVTSIGTEGNQVRISTNYGIGMTQESEDEELLVVGKVFEGV 766 Query: 639 -----KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692 + + + + +++ V P +S+++ R+ I+ V++S I M +YI +RF+ W F Sbjct: 767 QKFLPQGTTQQQFVDNYVVSSQRVSPSMSKDISRQAIIAVVLSLIFMGLYILLRFRNWAF 826 Query: 693 ALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 +LGA ++ + + L F +E + +AA+L +IGYS+ND VVV+DR+R+ Sbjct: 827 SLGAFASVATTTLLIVASYILLWQIMPFTMELDQNFIAALLAIIGYSINDVVVVFDRVRE 886 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 + Y + ++++++N TL R+V TS + F+ V + + GG+ + SF + GIV Sbjct: 887 TLHNYPNREE-KLVMNEALNSTLARTVQTSFSTFLVVFIIFILGGASMRSFTFALLIGIV 945 Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831 ++F+A+PI + + + Sbjct: 946 YGIFCTLFVASPIAYLVRSKQQQRK 970 Score = 54.3 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 17/202 (8%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98 +I LGLDL+GG ++VL+V+ D + + ++ N Sbjct: 66 ARNQQIGLGLDLKGGMNVVLKVNGRDLLRNLSGHNQSPAF-----IEAIDKAAKEGSNDF 120 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 +F ++ N + + ++++E+ VL + Sbjct: 121 VGTFV------KAYKELEPSGSLAVIFSNGPLRDVISPKSSDQEVIKVLQEKYS-----S 169 Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 AI+ ++ +++ RID+ G+ + G RIL++LPG +P R+R+LL +A + F + Sbjct: 170 AIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFWRT 229 Query: 218 LPNNSKKGFMFGVRFLRDSDGN 239 + + + N Sbjct: 230 YTYDEIASDLIDANNRLTAMAN 251 >gi|154482682|ref|ZP_02025130.1| hypothetical protein EUBVEN_00358 [Eubacterium ventriosum ATCC 27560] gi|149736458|gb|EDM52344.1| hypothetical protein EUBVEN_00358 [Eubacterium ventriosum ATCC 27560] Length = 752 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 185/695 (26%), Positives = 330/695 (47%), Gaps = 6/695 (0%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +S + + + +E + + R+ SE+T + G RI + +PGE D Sbjct: 60 GTSVSYQVDDSKTKSFTATDLEDTRLKLENRVHTFS-SEATAYKEGDDRITVDIPGEYDA 118 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 + + LG + F + + +++ + + E+ A+ Sbjct: 119 DAVVEELGKPGALYFCTATTDKPTDEQIDNHEYVKVGNNYYKVWLSGNEV-ADAKGVASK 177 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319 N D + VV++ F+ G F E+T +G+ ++ + +L+A I AI G+A+I Sbjct: 178 NKDTGKTEYVVNLEFNSKGTTAFGEMTTQYVGQSSYIIYNDEILSALTIQSAITGGQAEI 237 Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 +G +++ A LA+ +R G+L ++L + + A LGSD++ K A + G ++I+LF+ Sbjct: 238 NGQKSLKEAEELASNIRIGALKVELKEISHKVQSAQLGSDALSKSIKAGIIGFIIIILFL 297 Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439 +++Y GL A ++ V L L L+ TLTLP IAGI+L IG+AVD+N+++ RIR Sbjct: 298 LIVYRIPGLAAGLALLTYVELMLLALNGFDLTLTLPGIAGIILNIGMAVDANVIIYARIR 357 Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499 EE + ++ GF +A S I D NIT LIA +VL + G G V+GFA T+G+ ILI Sbjct: 358 EEIAAGRRTETAIKTGFKKAASAIIDGNITTLIAALVLLWKGSGTVQGFATTLGIGILIQ 417 Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559 +FT++ I R + + I + + + Sbjct: 418 LFTSLVISRIFVWILYYMGFQAPKFYGKEKTRKNINFVEKRKVFFGIAIVCIAIGIGGLI 477 Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 NY I+FKGG + + + SN++ ++ + +K+ Sbjct: 478 FNSANNGGAFNYSIEFKGGTSTEIQFSENYTMDEFNSNVKPAIEKLLNSTDIQAQKDTNK 537 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIV---PLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 + + E +K + + + +S+E+ +V +++ Sbjct: 538 DGLFTIKTRNFKDNEFEEMKDMLVKDYKAVDDKQNFTNTKISDTVSKEMRSDAVVATVLA 597 Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 I ML YIWIRFK +FAL A+ LI D+ +GF+AL + T +A +LT++GYS+N Sbjct: 598 TICMLFYIWIRFKNIHFALAAVMALIHDVLIVIGFYALSRVTVGTTFIACMLTIVGYSIN 657 Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 +V++DR+R+N +++D+SI +TL RS+YT++ F+ V + + G S I Sbjct: 658 ATIVIFDRIRENKAAMKRDDKMIEIVDRSITQTLTRSIYTTLTTFVMVFMIFIMGVSSIR 717 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F +P+ G++ A SS+FI + + ++ Sbjct: 718 EFTLPLMTGMIAGAFSSVFITGSLWYVLKGKKSDK 752 Score = 53.9 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 9 ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD---EDDF 65 I+ + + + + ++ GLDL GG+ + +VD F Sbjct: 23 IISIAVVLFLGYVVMFGVGGRHTGSA-------QNVTQGLDLMGGTSVSYQVDDSKTKSF 75 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ +L + + + ++ ++IT+ + + +++ Sbjct: 76 TATDLEDTRLKLENRVHTFSSEATAYKEGDDRITVDIPGEYDADAVVEELGK 127 >gi|295706719|ref|YP_003599794.1| protein-export membrane protein SecDF [Bacillus megaterium DSM 319] gi|294804378|gb|ADF41444.1| protein-export membrane protein SecDF [Bacillus megaterium DSM 319] Length = 745 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 194/694 (27%), Positives = 341/694 (49%), Gaps = 26/694 (3%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 D + A+ ++E +RQR+D +G+SE +IQ G+ RI +QL G + + R LL T A Sbjct: 54 GDVIDKKALNSTVEALRQRVDVLGVSEPSIQIEGNDRIRVQLAGVTNQKQARDLLSTQAN 113 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++F V G + S +++ + P Sbjct: 114 LTFRDVNDKVLMDGTDLAQGGAKQSFDQSNQPSVSLKLKNAKKFEKITRELSQKPAPNNL 173 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 I +E +D+ K + A V + GNFT+++A L Sbjct: 174 IVIWLD-----YEEGKDSYQKEATKQNPKYLSAASVSSVLTQPDVEISGGNFTVKSATQL 228 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +L AGSLP+KL+ + +VGA G ++++ A + G+ +I L+M+ Y G++A Sbjct: 229 AELLNAGSLPVKLDELYSTSVGAQFGEEALHTTILAGIIGIGIIFLYMLFFYRLPGIIAI 288 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ V L L + L+ +TLP IA ++LG+G+AVD+NI+ ER+++E + +S+ + Sbjct: 289 ITLSFYVYLNLLVFDLMHVVMTLPGIAALILGVGMAVDANIITYERVKDELKTGRSIISA 348 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G R+ +TIFD+NIT ++A +VLFF+G +V+GFA T+ + I++S TA+ R +M Sbjct: 349 YRAGNRRSLATIFDANITTMLAALVLFFYGQSSVKGFATTLMIGIVLSFITAVYGTRLLM 408 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ + + I D I F++ R S + I Sbjct: 409 SLLVNSRWFDKKPGYFGVKKEQIHDLSKDDGTTVLPTAWDKIDFVKYRKAFFTFSSVLVI 468 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 I + LN GIDF G ++ + AN V + ++ ++SL I + Sbjct: 469 IGIISVAVFRLNLGIDFTSGTRIEIPANHTVTQAEIQREMKSLDIKTDDVVITGKSNDTG 528 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V + + + K K N V P + +EL + ++ ++I++I Sbjct: 529 VVRVVGVLNKKEIANLKDHFKDKYGSE------PNVSTVSPTVGKELAKNAMMAIVIASI 582 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 ++IY+ IRF++Y AL A+ L+ D + F+L +E +LT +AAVLT++GYS+ND + Sbjct: 583 GIIIYVTIRFEFYMALAAVLALLHDAFFIVTVFSLTKLEVDLTFIAAVLTIVGYSINDTI 642 Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 V +DR+R+NM+ + + +++ S+ ET RS+ T + I+V+ + V+G I + Sbjct: 643 VTFDRIRENMQKFKSKTFDDLAFIVNLSLRETFTRSMNTVLTVVIAVVALLVFGSESIQN 702 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F+I + G+++ A SS+FIAA + L + K Sbjct: 703 FSIALLVGLILGAYSSVFIAAQLWLVWKGKQLKR 736 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 78/178 (43%), Gaps = 4/178 (2%) Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 VG + E + I+ II + +Y+ ++ + AI TL + L F L Sbjct: 247 TSVGAQFGEEALHTTILAGIIGIGIIFLYMLFFYRLP-GIIAIITLSFYVYLNLLVFDLM 305 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 + L +AA++ +G +V+ ++ Y+R++ +K T S +L Sbjct: 306 HVVMTLPGIAALILGVGMAVDANIITYERVKDELK---TGRSIISAYRAGNRRSLATIFD 362 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ ++ L + +G S + FA + GIV++ ++++ ++ + + R + + Sbjct: 363 ANITTMLAALVLFFYGQSSVKGFATTLMIGIVLSFITAVYGTRLLMSLLVNSRWFDKK 420 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 52/398 (13%), Positives = 115/398 (28%), Gaps = 24/398 (6%) Query: 42 NRISLGLDLRGGSHLVLEVDEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQN 96 I LGLDL+GG ++ +V L + LR + G+ S++ + + Sbjct: 30 KDIKLGLDLQGGFEILYKVSPAKKGDVIDKKALNSTVEALRQRVDVLGVSEPSIQIEGND 89 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQV 155 +I + A ++ D ++ +N + + + S S + Sbjct: 90 RIRVQLAGVTNQKQARDLLSTQANLTFRDVNDKVLMDGTDLAQGGAKQSFDQSNQPSVSL 149 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 ++ +I R+ + + + + + + +++ ++ + A +S Sbjct: 150 KLKNAKKFEKITRELSQKP--APNNLIVIWLDYEEGKDSYQKEATKQNPKYLSAASVSSV 207 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS-------GIHLNGATANFDPKTHKP 268 P+ G F V+ V++ G + Sbjct: 208 LTQPDVEISGGNFTVKSATQLAELLNAGSLPVKLDELYSTSVGAQFGEEALHTTILAGII 267 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 + I F M I V L+ V + +P A I G A Sbjct: 268 GIGIIFLYMLFFYRLPGIIAIITLSFYVYLNLLVFDLMHVVMTLPGIAALILGVGMAVDA 327 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 I+ L +I+ G+ +L L + Sbjct: 328 NIITYERVKDELKTGRSIISAYRA----GNRRSLATIFDANITTMLAALVLFFYGQ---- 379 Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 + F ++ +LS + A + +++ Sbjct: 380 -SSVKGFATTLMIGIVLSFITAVYGTRLLMSLLVNSRW 416 >gi|317495058|ref|ZP_07953430.1| protein-export membrane protein SecD [Gemella moribillum M424] gi|316914830|gb|EFV36304.1| protein-export membrane protein SecD [Gemella moribillum M424] Length = 764 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 183/699 (26%), Positives = 329/699 (47%), Gaps = 31/699 (4%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + A++ + + I +RI+ +G+SE I +RI ++L G +D R++L T A Sbjct: 61 GQTIDEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLSTQAN 120 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 ++ V G + +++ G + K Sbjct: 121 LTIRDVDDKILLDGSDLQENGASQGFDQNNKPDVNLKLKDGEKFGNITSEISKRGAGKNL 180 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + + + + K + + + ++AP ++Q I S QI+GNFT++ A + Sbjct: 181 MV-------IWMDFNEGDSFKAESAKSNPKYISAPQVSQTINSKDVQITGNFTVKEAKEM 233 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 AA+L +G+LP+KL + +VGA G+D++ + A L +I LFM+++Y G VA Sbjct: 234 AALLNSGALPVKLTEIYSNSVGAQFGADALSQTVLAGAIALGIICLFMLIVYRVPGFVAS 293 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 + V +T+ +++ LTLP IA ++LG+G+AVD+NI++ ERI+EE R + + Sbjct: 294 VMMVAYVYITVVFFNMISGVLTLPGIAALILGVGMAVDANIIMYERIKEEVRAGYPLKKA 353 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G ++ TIFDS T +IA +VLF FG +V+GFA + LSIL+S T++ R ++ Sbjct: 354 YLDGARQSLWTIFDSQFTTVIAAIVLFIFGTSSVKGFATMLLLSILVSFITSVFGTRLLL 413 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558 ++ + I + + F + SI I Sbjct: 414 SLLVNSNIFNNKPEYFGVNKKSIHESKFGINSLKLNTKFEWLSFTKNMKKFFAFSIAIMI 473 Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 L LN GIDF G ++ V +N + V+ +L SL + D +K Sbjct: 474 AGTISLGMFKLNLGIDFSSGTRIDVASNTELTTEQVKQDLSSLGVKDEKIVLTPDKKQAT 533 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V + A K + N +V P I +EL + + ++ ++I Sbjct: 534 VHSKDSFAQDKAIEI-------KEYFSKKYNKDANLSVVSPVIGKELAKNALFALMYASI 586 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 +++Y+ RF+W L ++ L+ D+ + ++ +E ++T +AAVLT++GYS+ND + Sbjct: 587 GIILYVAFRFEWRMGLTSVIALLHDVAVIIFITSILRLEVDITFIAAVLTIVGYSINDTI 646 Query: 739 VVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V +DR+R++M+ + L+D S+ +TL RS+ T + I+V+ M + G S I Sbjct: 647 VTFDRIREHMRHEKVLTSKEQIYKLVDVSLRQTLTRSINTVLTVIITVVVMLLVGSSSIY 706 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833 +F + + G++ SS+FIAA + + K +I Sbjct: 707 TFNVALLIGLIFGLYSSLFIAAQLWAVLKVRELNKKGKI 745 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 18/132 (13%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60 +++ L L ++ + + +++LGLDL+GG ++ +V Sbjct: 10 KSSRILAFLSLVVIILTSIGLTTK-------------TNAQKVNLGLDLQGGFEVLYQVE 56 Query: 61 ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116 D ++ +D + + G+ + + N+I + A + +E+ ++ Sbjct: 57 PLRDGQTIDEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLS 116 Query: 117 LFLQGVNSKLNV 128 ++ Sbjct: 117 TQANLTIRDVDD 128 >gi|187735992|ref|YP_001878104.1| protein-export membrane protein SecD [Akkermansia muciniphila ATCC BAA-835] gi|187426044|gb|ACD05323.1| protein-export membrane protein SecD [Akkermansia muciniphila ATCC BAA-835] Length = 793 Score = 286 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 183/731 (25%), Positives = 323/731 (44%), Gaps = 29/731 (3%) Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 L V+ T + + A+EQ+ I+ R++ G Sbjct: 56 SLFSLFQQGLKYGIDIAGGVSFTLSVEPNIGDDGKPIPLTDQAMEQACVILTDRLNSTGA 115 Query: 177 SESTIQRLGSHRI--LIQLPGEQDPSR---LRQLLGTTAKMSFHKVLPNNS--------- 222 ++ I+ + + DP++ + +L AK+ V P N+ Sbjct: 116 NDVIIRPKKKDNLNLIEVQIPAADPAKREETKAILTKVAKLQILPVHPRNNELVAEGRIR 175 Query: 223 KKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG 278 G+ ++ G +E + ++G + A + H V +E Sbjct: 176 VPGYRMYEYTFKNGKGEDVTEKIFLEKRESLTGRDIVRAGVDLARPGH--VNVTLSNEGA 233 Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG 338 + + +R +G ++ V+ + QAI S +ISG A L +L + Sbjct: 234 DKMYNLTSRMQLGHDRMAIVLDDVVKSAPTVQAILSKSFEISGLDAPGEAEALTKVL-SN 292 Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398 L KLN + A LG ++ +G A + GL+L + MI+ Y GLVA + +N Sbjct: 293 PLTNKLNFESASEISASLGHTALLQGEYAGITGLILCFIMMIIYYRFAGLVAIMGLTINA 352 Query: 399 ILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR 458 +L L +S+ G LTLP IAGIVL +G+AVDSN+L+ ER+REE + ++ F + Sbjct: 353 LLLLGAMSIFGFELTLPGIAGIVLTLGVAVDSNVLIYERLREEKEMGRPFRVAIRNSFDK 412 Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 A+S IFDSNIT+LI V+L++ G ++GFA+T+ + ++ SM AI + R + + Sbjct: 413 AFSAIFDSNITSLITAVILYWMATGTIKGFAVTLTVGVITSMIGAILVTRVLFYWADTVG 472 Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKG 577 MK + L I FM + W +S + + I G + G+DF G Sbjct: 473 MMKDLKF-----LNLFKKKTNIDFMSQKIWSCSLSAILLMICIVFGAVKGKDCLGMDFTG 527 Query: 578 GIQLG--VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635 G + V V + + Q + AQ + Sbjct: 528 GSSISYLVNKGDISFREVEGVVNKLSLTQKATVQEVAESTDSSKVNILINFSDHAQDKEA 587 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 V + + E +G + + + + + +++Y+ +RF+W FA+G Sbjct: 588 ITTALDKAFPVLDNAPFSEETIGQSMGYDTLITSAWALFFGILGIMVYLTVRFEWTFAIG 647 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 A+ L D+ LG + G E N+ + A+LT+ GYS+NDK++V+DR+R+ ++ + Sbjct: 648 AVIALTHDVLLVLGLVIVSGTELNVIHIGALLTVAGYSINDKIIVFDRIREFLRFSDPNE 707 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 S +++++IN+TL R++ TS++ ++ + +GG + FA ++ GI++ SSIFI Sbjct: 708 SASQIMNEAINQTLSRTILTSLSTLAVLVCLYFFGGPSMEDFAWTISAGILIGTYSSIFI 767 Query: 816 AAPILLFIYDW 826 A+P LF Sbjct: 768 ASPAALFFSRK 778 >gi|218133213|ref|ZP_03462017.1| hypothetical protein BACPEC_01075 [Bacteroides pectinophilus ATCC 43243] gi|217992086|gb|EEC58090.1| hypothetical protein BACPEC_01075 [Bacteroides pectinophilus ATCC 43243] Length = 776 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 181/689 (26%), Positives = 335/689 (48%), Gaps = 17/689 (2%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + D + ++ ++QR+ E+ + + G +RI +++P D + + + Sbjct: 65 ITYEIQEDNPSDQDVSDTIYKLQQRVTNYST-EAEVYKEGGNRITVEIPDVTDANAILEE 123 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG + F L SD + S Sbjct: 124 LGQPGTLMFLDSDGYTKFSNGEECTPLLTGSDVKNAVAGADTSQSSTS------------ 171 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 K VV + F++ G ++F + T N+GK + +V DG+V++AP +N+AI G AQI G + Sbjct: 172 -KYVVSLEFNDEGKQKFADATSANVGKIIYIVYDGKVVSAPRVNEAITGGSAQIDGMSSY 230 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 + A LA+ +R G++P++L + + VGA LG +I A GL ++ LFMI+ Y Sbjct: 231 DEANTLASYVRIGAMPLELKEMRSQVVGAKLGETAIQTSLLAGAIGLAILCLFMIIAYRV 290 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G+ A ++ + V L + +LS+ TLTL IAGIVL IG+AVD+N+++ RIREE Sbjct: 291 PGVAACLALVIYVALDIFILSVYEITLTLSGIAGIVLSIGMAVDANVVIFSRIREEIGAG 350 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +SV +++ GF +A S + D N+T +IA +VL+ G G+V+GFA+T+G+ +++SMFTA+ Sbjct: 351 KSVDAAIEQGFKKAMSAVVDGNVTTIIAALVLYLRGSGSVKGFAVTLGIGVVLSMFTALV 410 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 I + ++ + + + + + A + + + Sbjct: 411 ISKTIVRLLYNFGCKSEKLYGSVRHKKIFDFVSMRKATFAIPGVILAICIIVMIVFTANG 470 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 LNY +DF GG V + L+ + +N+ + N +K Sbjct: 471 KGALNYSLDFAGGTSTTVTFAEEMSLADIDANVIPVIREATGVANVQQQKVTDSTQVVFK 530 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 D ++ + + + + +++ + +S E+ + ++ +++ I +LIY+W Sbjct: 531 TDELSLAQREALNTALENKFGVADSDIDSQSISSTVSSEMKQDAVIATVLAIICILIYVW 590 Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 RFK FA + L+ D+ F+ + T +A +LT++GYSVN +V++DR+ Sbjct: 591 FRFKDISFAGSTVLALVHDVAIVFTFYVFSRLSVGGTFIACMLTIVGYSVNSTIVIFDRV 650 Query: 745 RK--NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R N + + ++ ++++SI TL RS+ TS+ FI + + ++G + I FA+P+ Sbjct: 651 RDTINSAADKSKLDYKQVVNESITNTLTRSINTSLTTFIMLAVLYIFGVATIREFALPLM 710 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831 GI+ A SS+F+ + L + K+ Sbjct: 711 VGIIAGAFSSVFLTGNMWLIFRAAKEKHQ 739 Score = 127 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 90/182 (49%), Gaps = 4/182 (2%) Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 +++VG K+ I+ ++ I + +++ I ++ + A L++ + + Sbjct: 252 MRSQVVGAKLGETAIQTSLLAGAIGLAILCLFMIIAYRVP-GVAACLALVIYVALDIFIL 310 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +++ I L+ +A ++ IG +V+ VV++ R+R+ + S I++ + + Sbjct: 311 SVYEITLTLSGIAGIVLSIGMAVDANVVIFSRIREEIGA---GKSVDAAIEQGFKKAMSA 367 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 V ++ I+ L + + G + FA+ + G+V++ +++ I+ I+ +Y++ K+ Sbjct: 368 VVDGNVTTIIAALVLYLRGSGSVKGFAVTLGIGVVLSMFTALVISKTIVRLLYNFGCKSE 427 Query: 832 RI 833 ++ Sbjct: 428 KL 429 Score = 59.3 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 43 RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102 +I GLDL GG + E+ ED+ + + +L+ + ++ N+IT+ Sbjct: 52 QIKQGLDLAGGVSITYEIQEDNPSDQDVSDTIYKLQQRVTNYSTEAEVYKEGGNRITVEI 111 Query: 103 ADSRFKENIADKVTL 117 D I +++ Sbjct: 112 PDVTDANAILEELGQ 126 >gi|227871701|ref|ZP_03990112.1| RND superfamily resistance-nodulation-cell division:proton (H+) antiporter [Oribacterium sinus F0268] gi|227842457|gb|EEJ52676.1| RND superfamily resistance-nodulation-cell division:proton (H+) antiporter [Oribacterium sinus F0268] Length = 712 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 176/619 (28%), Positives = 299/619 (48%), Gaps = 16/619 (2%) Query: 223 KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF--DPKTHKPVVDISFDEMGAR 280 + V ++G + ATA + V+++ F E GA Sbjct: 94 TDANEILAELGEPGTLQFADEDGNVLLTGDDVKTATAGMTNQNNNREYVIELHFTEAGAT 153 Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340 +F E T++N+GK + ++ + V+++P + +AI G+A IS + E A +A+ +R G+L Sbjct: 154 KFAEATKNNVGKRIFIIYNNEVISSPNVKEAITGGQASISPIESYEQAQKIASTIRIGAL 213 Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 P+ L + +GA LG+++I A G+ L++LFM+ +Y GL A ++F+ V L Sbjct: 214 PVSLTELRSNVIGATLGAEAISTSLQAAAIGIALVMLFMLCVYRIPGLAASLALFMYVGL 273 Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460 + L+ TLTLP IAGI+L IG+AVD+N+++ RI+EE SV ++ GF +A Sbjct: 274 EMVLMQAFEVTLTLPGIAGIILSIGMAVDANVIIFTRIKEEIGAGNSVEKAIKSGFEKAL 333 Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 S I D NIT LIA VL+ G G V+GFA T+ + I+IS+ TA+ + R ++ Sbjct: 334 SAILDGNITTLIAAAVLYIRGSGTVKGFATTLAIGIIISLITALFVTRGLLTAFFA---- 389 Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG------LNYGID 574 + + + + I F+ R IS L I L + NY +D Sbjct: 390 --LGATNPKLYGIKKETKVINFIGFRRIAYSISSLVIIVGFIFLAMNKKNTGDIFNYDLD 447 Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 FKGG + ++ + + + S + L + T Sbjct: 448 FKGGSSTTITFDKDLSMMEIDSEVIPLFTAATGGNASTQAAKVAGTNEVIIKTRTMTTEE 507 Query: 635 LEMVKKKITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYF 692 + + E TE + +S E+ + + ++I+ MLIYIWIRF F Sbjct: 508 RTKLYDSLQEKFSISEDKIVTENISGAVSTEMKKDAVWALLIAIFCMLIYIWIRFTDIKF 567 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 A ++ L D+ T+ F+A+ +A +LT++GYS+N +V++DR+R+N+ + Sbjct: 568 ASASVMALSHDVLITVTFYAVLRWAVGSNFIACILTIVGYSINATIVIFDRIRENLHNGS 627 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 +++++I+ T+ RS+ TS+ FISV + ++G S I F +P+ GIV A SS Sbjct: 628 KKKGLEYVVNEAISSTVTRSINTSLTTFISVFVLYIFGVSSIRDFTLPLMVGIVAGAWSS 687 Query: 813 IFIAAPILLFIYDWRAKNA 831 + IA P+ + Sbjct: 688 VCIAGPLWFDFVILSKRKK 706 Score = 124 bits (310), Expect = 7e-26, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 82/206 (39%), Gaps = 4/206 (1%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + +I + T + ++G + E I + I +++++ Sbjct: 196 ESYEQAQKIASTIRIGALPVSLTELRSNVIGATLGAEAISTSLQAAAIGIALVMLFMLCV 255 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ L A L + + + F + L +A ++ IG +V+ V+++ R+++ Sbjct: 256 YRIP-GLAASLALFMYVGLEMVLMQAFEVTLTLPGIAGIILSIGMAVDANVIIFTRIKEE 314 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + S I + L + ++ I+ + + G + FA +A GI++ Sbjct: 315 IGA---GNSVEKAIKSGFEKALSAILDGNITTLIAAAVLYIRGSGTVKGFATTLAIGIII 371 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + +++F+ +L + A N ++ Sbjct: 372 SLITALFVTRGLLTAFFALGATNPKL 397 Score = 49.7 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 30/81 (37%) Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96 + I LGLDL GG + + E++ + +L+ + ++ +N Sbjct: 25 GYLNAKNIKLGLDLNGGVSITYQTVEENPTAEQMSDTVYKLQMKAQSYSTEAQVYQEGKN 84 Query: 97 KITLSFADSRFKENIADKVTL 117 +I + + I ++ Sbjct: 85 RINIDIPGATDANEILAELGE 105 >gi|295107071|emb|CBL04614.1| protein-export membrane protein SecF/protein-export membrane protein SecD [Gordonibacter pamelaeae 7-10-1-b] Length = 943 Score = 285 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 184/786 (23%), Positives = 335/786 (42%), Gaps = 82/786 (10%) Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186 + L + + + V + +E+S II R++ +G SE+ +Q G+ Sbjct: 50 PQEKINQGLDIQGGLSVVLTAKGESGQAVSTEDMEKSRAIIESRVNALGASEAVVQVQGT 109 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK-------KGFMFGVRFLRDSDGN 239 +IL+Q+PG + +G T K+ F ++ + G + D GN Sbjct: 110 DQILVQIPGLTNTEDALDTIGKTGKLEFARLDSFTDQDVKTKIENGQYGNEATITDELGN 169 Query: 240 QYLVEDK-----------VEISGIHLNGA-TANFDPKTHKPVVDISFDEMGARRFFEVTR 287 Q +SG ++ + V++ D G F E T+ Sbjct: 170 QLPAGKTEHLKVEDGTYTPLVSGANITNVSIGKEKEASADYAVNVKLDGEGTTAFAEATK 229 Query: 288 --DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 + ++LD V +AP + IP+G I+G ++++ A L +L +GSLP+ Sbjct: 230 ELAPTKGKIVIILDNEVQSAPAVQSEIPNGDVSITGGYSLDEAKSLQTVLESGSLPVSFE 289 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 + + VG LG D++ G + GL +++L+++ Y GL+ ++ + +L L +L Sbjct: 290 YAQSQVVGPTLGQDALASGVLVALIGLAVVMLYLLFFYRGLGLITAAAMGIFAVLYLGIL 349 Query: 406 SLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461 + L +L+L IAGIVL IG+A DS+IL ER REE R +SV + G A Sbjct: 350 ATLSAFGLFSLSLAGIAGIVLTIGMAADSSILTMERFREEIRMGRSVRAASITGVRHAIV 409 Query: 462 TIFDSNITALIATVVLFFFGGGAVRGFAIT-----MGLSILISMFTAISIVRAMMIFIIR 516 T D+++ L++ + LFF +V+GF +T + +++ +F A I I R Sbjct: 410 TSVDADLVTLVSALSLFFLATASVKGFGLTLALGIVCDIVMMLLFKAPLIRLLAPKVIAR 469 Query: 517 YKKMKSID-------------------------------------------------INP 527 + + + Sbjct: 470 HPRFWGVADAEAAAKDYEALALAEGTSTAAAEAGEALNPAESERVVEKRAGAAGEAAAEA 529 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + I F+ R + ++ + S ++ GLN+GI+F GG + Sbjct: 530 ARKPHGRFIKHDINFLGYRRIFLTVAAVLVCASFAVVGVKGLNFGIEFVGGTSVAFHNTG 589 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V +RS+ ++ D Q + + ++ + T V + Sbjct: 590 DVTTEQLRSSFDAAGEPDAVIQTTNADGQEGFLVRTTTTSAEDATARANQVAGDL---GL 646 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + +GP +I+ ++ ++S + ++IYI IRF + + AI L+ D+ Sbjct: 647 STDSFEVTTIGPDWGASVIQSSLIAFLVSIVLIIIYIAIRFDYKMGITAIVALLHDLVLV 706 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +AL G E N +AA+LT++GYS+ D VVV+ R+ NM+ +F + + SIN+ Sbjct: 707 MGIYALVGREVNPNTIAALLTILGYSLYDTVVVFHRINDNMRGDDIKCTFMTMANHSINQ 766 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 L R++ T++ + I VL M +GG + FA MA G++ + SS+ +A P+ Sbjct: 767 VLVRTINTTLTSLIPVLAMLFFGGETLKDFAFAMAIGLICGSYSSVAVATPLYAMWKTRE 826 Query: 828 AKNARI 833 +NA++ Sbjct: 827 PRNAKL 832 >gi|254440495|ref|ZP_05053989.1| protein-export membrane protein SecD, putative [Octadecabacter antarcticus 307] gi|198255941|gb|EDY80255.1| protein-export membrane protein SecD, putative [Octadecabacter antarcticus 307] Length = 738 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 241/728 (33%), Positives = 383/728 (52%), Gaps = 38/728 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSA 38 ++ + W + ++ G+++A+PN + +P Sbjct: 2 LKIDLWKRTVIWLVVAFGIIVAMPNGFYSKVEVSNDAEAIIAESGTTPELVAAAGDWPLF 61 Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK- 97 +P N ++LGLDLRGG+ L+ EV + ++ E+R L + V + Sbjct: 62 LPDNLVNLGLDLRGGAQLLAEVKVEQVYEQRMRGMWPEVRDVLAAQRDVVGFVTDESGTP 121 Query: 98 --ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + + ++ + + V Q V S +V +V T ++ I LS Sbjct: 122 GELRVRISEPAGMDRAMELVRGLAQQVVSISSVGETDIEVVALTATDLVITLSDAEKVAT 181 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 + Q++EI+R+RID+ G E +IQR GS+RILIQ+PG ++ ++GTTA++ FH Sbjct: 182 DDRTVRQALEIVRRRIDETGTREPSIQRQGSNRILIQVPGVGSAQEVKDIIGTTAQLGFH 241 Query: 216 KVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 V+ + G D +G Y+VE ++G L + F+ +P V Sbjct: 242 SVVGSTGDPDARPGPGNMVIPSLDVEGQYYIVERSPVVTGEELVDSQPTFNENN-QPAVT 300 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 F+ GAR+F + TRDN+G P A+VLD V++AP I I G I+G FT+E + L Sbjct: 301 FRFNPSGARKFGDYTRDNVGSPFAIVLDNEVVSAPTIQSHISGGSGIITGRFTLEESTNL 360 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 A +LRAG+LP +L+ ++E+ VG DLG DSI GT A + L++++M++ YG G+ A+ Sbjct: 361 AVLLRAGALPAELDFLQEQTVGPDLGQDSINAGTIACIVAFALVLIYMVLSYGLLGVFAN 420 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ +NV L ALLSL+G TLTLP IAGIVL IG+AVD+N+L+ ERIREE+R + + Sbjct: 421 VALLVNVALIFALLSLIGGTLTLPGIAGIVLTIGMAVDANVLIFERIREESRTAKGPARA 480 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 +++G+ +A S I D+NIT LI +LF G G VRGFAIT+GL I+ S+FTAI + R ++ Sbjct: 481 IELGYEKALSAIIDANITTLITAAILFAMGAGPVRGFAITLGLGIITSVFTAIFVTRLLV 540 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571 + K+ K + L+ A F + +G+S + + + GLNY Sbjct: 541 VIWFERKRPKKVFAA--KYLRLVKSETAFDFFKRGKIWLGLSGIMVVVAFVSFLAQGLNY 598 Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQP 625 GIDFKGG + + + +D+S R+ + L++G+ + V +Q Q Sbjct: 599 GIDFKGGTTVRTDSTQMIDVSEYRAVIAPLELGEVTITEVFDPTFDADQNVATVAIQAQD 658 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 G+ + V+ + + P T E VGP +S ELI+ I+ VI++ A+LIYIW Sbjct: 659 GEESVSNETISAVQNALRTLDPEMTFPAVESVGPTVSGELIQSAILAVILAIGAVLIYIW 718 Query: 686 IRFKWYFA 693 +RF+W FA Sbjct: 719 MRFEWQFA 726 Score = 152 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 83/179 (46%), Gaps = 4/179 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + VGP + ++ I G + I++ +LIY+ + + + A L++++ + Sbjct: 377 QEQTVGPDLGQDSINAGTIACIVAFALVLIYMVLSYGLL-GVFANVALLVNVALIFALLS 435 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L G L +A ++ IG +V+ V++++R+R+ + T+ I+ + L Sbjct: 436 LIGGTLTLPGIAGIVLTIGMAVDANVLIFERIREESR---TAKGPARAIELGYEKALSAI 492 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ I+ + G + FAI + GI+ + ++IF+ +++ ++ + Sbjct: 493 IDANITTLITAAILFAMGAGPVRGFAITLGLGIITSVFTAIFVTRLLVVIWFERKRPKK 551 >gi|167760771|ref|ZP_02432898.1| hypothetical protein CLOSCI_03156 [Clostridium scindens ATCC 35704] gi|167661658|gb|EDS05788.1| hypothetical protein CLOSCI_03156 [Clostridium scindens ATCC 35704] Length = 725 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 171/697 (24%), Positives = 313/697 (44%), Gaps = 48/697 (6%) Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ------DPSRLRQ 204 ++ +E + E+I R+D I + + +I + DP Q Sbjct: 55 TKEKPTKAELEMAREVIETRLDAQNILDREVTVDEKAGNIIVRFPWKSDEKDFDPETAIQ 114 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 LG A+++F + V + G + + A D + Sbjct: 115 ELGQMAELTFR--------------------------GPDGTVYVKGSDVARSRAALDEQ 148 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324 + +V++ F GA +F T + G+ + + +D +++ P++N I GKA+I+G + Sbjct: 149 K-RNIVELEFTSKGAEKFANATEELAGQNMGIYMDEEMISNPLVNGKITGGKAEITGMAS 207 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 E + LA + +G+LP + + LG ++ A +VLI LFM+ Y Sbjct: 208 KEESQDLADKINSGALPFSMETTNYNTISPTLGDRALNAMAAAAGITMVLICLFMVAWYR 267 Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444 G+++ ++ + L + +S+ T+TLP IAG++L G+AVD+NI+++ERI EE +K Sbjct: 268 LPGIISCLTLAFQIALQILAISVPQYTITLPGIAGLILSGGMAVDANIIISERISEELKK 327 Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504 SV ++ G+ RA+S++ D NIT +L FG G + F T+ ++I++ + Sbjct: 328 GSSVKRAIKSGYQRAFSSVLDGNITTAAVAGILMIFGSGTMLSFGYTLLTGVIINLLAGV 387 Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564 + R+M+ IIRY N F D + F A+ + SI + Sbjct: 388 WMSRSMLNSIIRYG-----FFNQGKWFCKKRDKKVLHFTEAKRYFFLASIAVIVSGTIWS 442 Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFLVRLQ 622 +G+ F GG+ L + D ++ +E + +S Q + + L Sbjct: 443 AANGVKLDTQFTGGVILKYTYSGKADTGQIQQKVEDIADRSVSVQTSEDPSTGEKKLVLT 502 Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 + ++ + +++ T V P I + ++ ++ +I+S + +++ Sbjct: 503 LAGKNGLSPDQQKQILNTLNKGNDNRFQTSETYAVEPYIGAKALKNSVIAIILSFLFIIV 562 Query: 683 YIWIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 YI +RF + A+ L+ DI L F +F I N VA LT+IGYS+ND + Sbjct: 563 YIRLRFSALGGLAAGVTAVLALMHDICIVLFVFGIFRIPLNDAFVAVTLTIIGYSINDTI 622 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA----VWGGSVI 794 V+YDR+R++ + +L+D S ETLGRS+ T+ + + V+ I Sbjct: 623 VLYDRIREHRNTMKRKGTLAELVDLSTTETLGRSINTAFTVILCAFIILAASIVYQMESI 682 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F++P+ G+V SSI IAAP+ ++ + K Sbjct: 683 TKFSLPLLAGLVSGCYSSICIAAPLWVWWEEQVQKRK 719 Score = 53.5 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 17/139 (12%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+N + + + + + +A+ + G+D+RGG V E Sbjct: 1 MKNKKLNIWIALGVIFLFVYLAVFGCGG--------GIKGMRDMRFGIDIRGGVEAVFEP 52 Query: 61 DE--DDFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFAD-----SRFKENI 111 + L+M + + + L + I ++ + I + F E Sbjct: 53 AGTKEKPTKAELEMAREVIETRLDAQNILDREVTVDEKAGNIIVRFPWKSDEKDFDPETA 112 Query: 112 ADKVTLFLQGVNSKLNVDP 130 ++ + + Sbjct: 113 IQELGQMAELTFRGPDGTV 131 >gi|325662333|ref|ZP_08150942.1| hypothetical protein HMPREF0490_01681 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086136|ref|ZP_08335218.1| hypothetical protein HMPREF0987_01521 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471335|gb|EGC74558.1| hypothetical protein HMPREF0490_01681 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406295|gb|EGG85809.1| hypothetical protein HMPREF0987_01521 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 713 Score = 284 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 189/707 (26%), Positives = 326/707 (46%), Gaps = 31/707 (4%) Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188 KN+ + + Q S + ++ +++R++Q E+T+ + G R Sbjct: 34 GSAKNITLGLDLAGGVSITYQAKDKNPTSEQMSDTIYKLQKRVEQYST-EATVYQEGDDR 92 Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248 I I++PG D +++ LG + F E V Sbjct: 93 INIEIPGVTDANKILDELGKPGSLVFQDS--------------------------EGNVV 126 Query: 249 ISGIHLNGATANFDPKTH---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305 + G + A+A + +V++ + G +F + T +N+GK +A+V DG+ ++ Sbjct: 127 LEGTDVKTASAKTTQDEMNNKEYIVELILTKDGTDKFAKATAENLGKQIAIVYDGKTISN 186 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 PV+ I G+A I G + E A LA+ +R G L ++L + VGA LG ++I Sbjct: 187 PVVQSEIDGGQAYIDGMASYEEAENLASTIRIGGLQLELEELRSNVVGAQLGEEAISTSL 246 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 A GL ++++FM ++Y G + ++ + LTL LL+ TLTLP IAGIVL IG Sbjct: 247 LAGAIGLAIVLVFMCIVYLLPGFASSIALIIYTGLTLVLLNAFNITLTLPGIAGIVLSIG 306 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +AVD+N+++ R+REE ++V +L +GF +A S I D NIT LIA +VL G G+V Sbjct: 307 MAVDANVIIFARVREELAAGRAVKSALRIGFQKALSAIIDGNITTLIAALVLGLKGTGSV 366 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545 +GFA T+ L +++SMFTA+ I R ++ + + A Sbjct: 367 KGFAQTLALGVVVSMFTALFITRIIIFSLYAIGFRDVKFYGAKKTTKVRNFLGKKAVCFA 426 Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605 + + L + Y ++F GG V N + + S + + Sbjct: 427 ISGVIILGGLGIMGYHAAKGQGAFKYSLEFMGGTSTNVTFNEDYSIKEIDSKVVPVVEKI 486 Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665 N +K S+ K + ++ +E + +S E+ Sbjct: 487 TKDANVQTQKVDGSNAVIIKTRSLDLEEREAFNKAMVDNFDVDESLITSENISSTVSSEM 546 Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 +V ++I+ ML+YIW RFK FA A+ L+ D+ + F+ + I T +A Sbjct: 547 RSDAVVALLIATACMLLYIWFRFKDVRFATSAVIALLNDVLFVVVFYGVARISVGNTFIA 606 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 +LT++GYS+N +V++DR+R+ +K+ + L+++ I+ETL RS+YT+ F+ V+ Sbjct: 607 CILTMVGYSINSTIVIFDRIREELKVQKRNEDLATLVNRCISETLTRSIYTNFTTFVMVV 666 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + G S + FA P+ GIV SSI I + + K Sbjct: 667 ILFILGVSSVKEFAAPLMVGIVGGTFSSITITGALWYIMRTKIQKKK 713 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 81/180 (45%), Gaps = 4/180 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +VG ++ E I ++ I +L+++ I + + LI+ TL Sbjct: 229 RSNVVGAQLGEEAISTSLLAGAIGLAIVLVFMCIVY-LLPGFASSIALIIYTGLTLVLLN 287 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F I L +A ++ IG +V+ V+++ R+R+ + + + + + L Sbjct: 288 AFNITLTLPGIAGIVLSIGMAVDANVIIFARVREELAA---GRAVKSALRIGFQKALSAI 344 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+ L + + G + FA +A G+VV+ +++FI I+ +Y ++ + Sbjct: 345 IDGNITTLIAALVLGLKGTGSVKGFAQTLALGVVVSMFTALFITRIIIFSLYAIGFRDVK 404 Score = 67.8 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 46/144 (31%), Gaps = 9/144 (6%) Query: 1 MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58 M+ + W +I +++ + + F I+LGLDL GG + Sbjct: 1 MKKSRGVWSLIATTLLIVLLGFTTIVGFGKG-------KIGSAKNITLGLDLAGGVSITY 53 Query: 59 EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 + + + + + +L+ +++ ++ ++I + I D++ Sbjct: 54 QAKDKNPTSEQMSDTIYKLQKRVEQYSTEATVYQEGDDRINIEIPGVTDANKILDELGKP 113 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKE 142 V + T Sbjct: 114 GSLVFQDSEGNVVLEGTDVKTASA 137 >gi|313897325|ref|ZP_07830868.1| export membrane protein SecD [Clostridium sp. HGF2] gi|312957695|gb|EFR39320.1| export membrane protein SecD [Clostridium sp. HGF2] Length = 763 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 182/697 (26%), Positives = 328/697 (47%), Gaps = 43/697 (6%) Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209 A+ +S+E +R+D +G++E I G +RI +QL G ++ + R+++ +T Sbjct: 51 EGKKLPSMTAVAKSVE---KRVDVLGVNEPEITVEGDNRIRVQLAGVKNADQARRVISST 107 Query: 210 AKMSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 A ++F V +S G + D+ G + + F T Sbjct: 108 ANLTFRDVNDNLLMDSTVLQEGGASVMYDNYGKPIVSLKLSD---------QKKFYEVTQ 158 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 K S + + + + ++A +++ I S AQISG+FT E Sbjct: 159 KVSQMGSGSNLMVAWLDFNPDTDSYAKEKDQKNPKFISAATVSEGINSTSAQISGSFTKE 218 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A L ++ +GSLP+K++ V AD G ++ + A G+ LI+LFMI+ Y Sbjct: 219 EATELKDLINSGSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLP 278 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 GL++ ++ V + + + +GA TL IA +VLG+G+A DSNIL ERI++ + Sbjct: 279 GLISAVTLATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALYSGR 338 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 SV + G S+++ TIFD+ +T I ++L+ G G+V+GFA + +S + ++ + + Sbjct: 339 SVKTAFYEGSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIILIVFV 398 Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP------------DCIAIQFMRARFWGVGISI 554 + ++ ++ + + +P F++ + + S+ Sbjct: 399 TKFLLSLLVGSGWLNDKLSWFGVKKAHVPDVSKGQERFYFGFFKNFDFVKNAKYFIIASV 458 Query: 555 LFSICSICLLFTHGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608 + + + G+ N+GIDF G +L V ++ + + L+SL I S Sbjct: 459 TVLVIGVGCMAFQGMKGNGILNWGIDFTSGTKLTVQSDTAISRDKLNDQLKSLGINASSI 518 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + + N D V +KK N +V P I +EL+R Sbjct: 519 KINGEKDNVANIFVKDAIDEHKMDTVKAGLKK------TYQHDVNDNVVTPVIGQELVRS 572 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 I+ I++ I +LIYI IRFKW +A+ I LI D+ L A+F +E N +A +LT Sbjct: 573 AILISILAWIGVLIYISIRFKWDYAISGIVGLIHDVFFVLAACAIFRLEVNTEIIAVLLT 632 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYT----TSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 +IGYS+N+ +VV+DR+R MK T +R+++++++ T RS+ +++ + V+ Sbjct: 633 VIGYSINNSIVVFDRIRDEMKGRKLATTTKAEYREIVNEALQRTATRSILSTLTTILPVV 692 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + +G S I F + + GI A SS+F+AA + Sbjct: 693 CLLFFGSSAIRIFCLALFIGIACGAGSSLFVAAQLWY 729 Score = 100 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 85/260 (32%), Gaps = 6/260 (2%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 G + + D + IS N T Sbjct: 163 MGSGSNLMVAWLDFNPDTDSYAKEKDQKNPKFISAATVSEGINSTSAQISGSFTKEEATE 222 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693 + +++ + + + + V + ++ I +++++ + ++ Sbjct: 223 LKDLINS--GSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLP-G 279 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 L + TL + + G F L+ +AA++ +G + + ++ ++R++ + + Sbjct: 280 LISAVTLATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALY---S 336 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 S + + +++ + FI L + + G + FA + + + Sbjct: 337 GRSVKTAFYEGSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIILIV 396 Query: 814 FIAAPILLFIYDWRAKNARI 833 F+ +L + N ++ Sbjct: 397 FVTKFLLSLLVGSGWLNDKL 416 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 60/497 (12%), Positives = 136/497 (27%), Gaps = 19/497 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + +V + +++ + L+ + PS + + LGLDL+GG ++ EV Sbjct: 1 MKKSRLVVFVITVLTILTLI-----------VTCTPSV--RKNMKLGLDLQGGFEILYEV 47 Query: 61 DEDDFVNG-FLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLF 118 + + + + + G+ + + N+I + A + + ++ Sbjct: 48 SPLEGKKLPSMTAVAKSVEKRVDVLGVNEPEITVEGDNRIRVQLAGVKNADQARRVISST 107 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 +N + + V ++ V +Q + S Sbjct: 108 ANLTFRDVNDNLLMDSTVLQEGGAS-VMYDNYGKPIVSLKLSDQKKFYEVTQKVSQMGSG 166 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 S + ++ + + A +S + G D Sbjct: 167 SNLMVAWLDFNPDTDSYAKEKDQKNPKFISAATVSEGINSTSAQISGSFTKEEATELKDL 226 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 + ++ F + G AV L Sbjct: 227 INSGSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLPGLISAVTL 286 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 V +I A+ + + G+ A IK + R+V Sbjct: 287 ATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALYSGRSVKTAFYE 346 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 S A + + +I+ G V F+ L V ++ ++ T L S+ Sbjct: 347 GSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIILIVFVTKFLLSLL 406 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF---SRAYSTIFDSNITALIATV 475 + + + + + ++ + + F A I S +I Sbjct: 407 VGSGWLNDKLSWFGVKKAHVPDVSKGQERFYFGFFKNFDFVKNAKYFIIASVTVLVIGVG 466 Query: 476 VLFFFGGGAVRGFAITM 492 + F G + Sbjct: 467 CMAFQGMKGNGILNWGI 483 >gi|309775426|ref|ZP_07670429.1| protein-export membrane protein SecDF [Erysipelotrichaceae bacterium 3_1_53] gi|308916815|gb|EFP62552.1| protein-export membrane protein SecDF [Erysipelotrichaceae bacterium 3_1_53] Length = 763 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 187/697 (26%), Positives = 331/697 (47%), Gaps = 43/697 (6%) Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209 A+ +S+E +R+D +G++E I G +RI +QL G ++ + R+++ +T Sbjct: 51 EGKKLPSMTAVAKSVE---KRVDVLGVNEPEITVEGDNRIRVQLAGVKNADQARRVISST 107 Query: 210 AKMSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 A ++F V +S G + D+ G + + F T Sbjct: 108 ANLTFRDVNDNLLMDSTVLQEGGASVMYDNYGKPIVSLKLSD---------QKKFYEVTQ 158 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326 K S + + + + + ++A +++ I S AQISG+FT E Sbjct: 159 KVSQMGSGNNLMVAWLDFDANTDSYAKEKNSENPKFISAATVSEGINSTSAQISGSFTKE 218 Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386 A L ++ +GSLP+K++ V AD G ++ + A G+ LI+LFMI+ Y Sbjct: 219 EATELKDLINSGSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLP 278 Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446 GL++ ++ V + + + +GA TL IA +VLG+G+A DSNIL ERI++ + Sbjct: 279 GLISAVTLATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALYSGR 338 Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 +V + G S+++ TIFD+ +T I ++L+ G G+V+GFA + +S + ++ + + Sbjct: 339 TVKTAFYEGSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIVLIVFV 398 Query: 507 VRAMMIF------------IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554 + ++ KK + D++ F F++ + + SI Sbjct: 399 TKFLLSLLVKSGLLNDKLSWFGVKKNQVPDVSKGQERFYFGFFKDFDFVKNAKYFIIASI 458 Query: 555 LFSICSICLLFTH------GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608 + + LN+GIDF G +L V +++ + + L+SL I S Sbjct: 459 TVLAIGVGCMTFQGVKGNGILNWGIDFTSGTKLTVQSDKAISKDQLNDQLKSLGINASSI 518 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + + N D A +V + +KK N +V P I +EL+R Sbjct: 519 KINGEKDNIANVFVKDAIDENAMDKVKDSLKK------TYQHDVNDNVVTPIIGQELVRS 572 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 I+ I++ I +LIYI IRFKW +A+ I LI D+ L A+F +E N +A +LT Sbjct: 573 AILISILAWIGVLIYISIRFKWDYAVSGIVGLIHDVFFVLAACAIFRLEVNTEIIAVLLT 632 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYT----TSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 +IGYS+N+ +VV+DR+R MK T +R +I++++ T RS+ +++ + V+ Sbjct: 633 VIGYSINNSIVVFDRIRDEMKGRKLATTTKEDYRAIINEALQRTATRSILSTLTTILPVV 692 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + +G S I F + + GI A SS+F+AA + Sbjct: 693 CLLFFGSSAIRVFCLALFIGIACGAGSSLFVAAQLWY 729 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 27/260 (10%), Positives = 85/260 (32%), Gaps = 6/260 (2%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 G + + + S IS N T Sbjct: 163 MGSGNNLMVAWLDFDANTDSYAKEKNSENPKFISAATVSEGINSTSAQISGSFTKEEATE 222 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693 + +++ + + + + V + ++ I +++++ + ++ Sbjct: 223 LKDLINS--GSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLP-G 279 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 L + TL + + G F L+ +AA++ +G + + ++ ++R++ + + Sbjct: 280 LISAVTLATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALY---S 336 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 + + + +++ + FI L + + G + FA + + + Sbjct: 337 GRTVKTAFYEGSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIVLIV 396 Query: 814 FIAAPILLFIYDWRAKNARI 833 F+ +L + N ++ Sbjct: 397 FVTKFLLSLLVKSGLLNDKL 416 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 45/426 (10%), Positives = 115/426 (26%), Gaps = 19/426 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + +V + S++ + L+ + PS + + LGLDL+GG ++ EV Sbjct: 1 MKKSRLVVFVISVLTILTLI-----------VTCTPSI--RKNMKLGLDLQGGFEILYEV 47 Query: 61 DEDDFVNG-FLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLF 118 + + + + + G+ + + N+I + A + + ++ Sbjct: 48 SPLEGKKLPSMTAVAKSVEKRVDVLGVNEPEITVEGDNRIRVQLAGVKNADQARRVISST 107 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 +N + + V ++ V +Q + S Sbjct: 108 ANLTFRDVNDNLLMDSTVLQEGGAS-VMYDNYGKPIVSLKLSDQKKFYEVTQKVSQMGSG 166 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK---VLPNNSKKGFMFGVRFLRD 235 + + ++ + + A +S + Sbjct: 167 NNLMVAWLDFDANTDSYAKEKNSENPKFISAATVSEGINSTSAQISGSFTKEEATELKDL 226 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 + V+ + S N +T M + I Sbjct: 227 INSGSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLPGLISAVTL 286 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 V A+ + + + A + + + + Sbjct: 287 ATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALYSGRTVKTAFYE 346 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 S S A V + ++ ++ G A I + + ++ + L+L Sbjct: 347 GSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIVLIVFVTKFLLSLL 406 Query: 416 SIAGIV 421 +G++ Sbjct: 407 VKSGLL 412 >gi|325832053|ref|ZP_08165150.1| export membrane protein SecD [Eggerthella sp. HGA1] gi|325486374|gb|EGC88826.1| export membrane protein SecD [Eggerthella sp. HGA1] Length = 898 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 182/787 (23%), Positives = 334/787 (42%), Gaps = 83/787 (10%) Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186 + L + + + V + +E+S II R++ +G SE+ +Q G+ Sbjct: 41 PQEKINQGLDIQGGLSVVLTAKSTDGADVTNDDMEKSRAIIESRVNALGASEAVVQVQGT 100 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED- 245 +IL+Q+PG + +G T K+ F ++ + ++G Sbjct: 101 DQILVQIPGLTNTEDALNTIGKTGKLEFARLDSFTDEDAKTKIENGQYGNEGTVSDDLGV 160 Query: 246 ------------------KVEISGIHLN-GATANFDPKTHKPVVDISFDEMGARRFFEVT 286 ++G + + V+I+ D GA+ F + T Sbjct: 161 LTLPTGETQHLKVEDGMYTPIVTGADITKVDIGKPSETSTDYAVNITLDAEGAKAFADAT 220 Query: 287 R--DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344 + + ++LD V +AP + IP G QI+G ++++ A + +L +GSLP+ Sbjct: 221 KELAPTKGKIVIILDNEVQSAPAVQSEIPDGNVQITGGYSLDEAKAMQTVLESGSLPVSF 280 Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404 + + VG LG D++ G + GL +++L+++ Y GL+ ++ + +L L + Sbjct: 281 EYAQSQTVGPTLGQDALASGVLVALIGLAVVMLYLLFFYRGLGLITAAAMIVFAVLYLGI 340 Query: 405 LSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460 L+ L +L+L IAGIVL IG+A DS+IL ER REE R +SV + G A Sbjct: 341 LATLSSFGLFSLSLAGIAGIVLTIGMAADSSILTMERFREEIRMGRSVRAASVTGVRHAI 400 Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAIT-----MGLSILISMFTAISIVRAMMIFII 515 T D+++ L++ + LFF +V+GF +T ++ +F A I I Sbjct: 401 VTSIDADLVTLVSALSLFFLASASVKGFGLTLALGIACDIAMMLLFKAPLIRLLAPKVIA 460 Query: 516 RYKKMKSIDIN------------------------------------------------- 526 R+ I + Sbjct: 461 RHPGFWGIKDSLAASEDYAALAAAEGTSTAAAEAGEAINAAESEEAAQRAEGAAGEAAAR 520 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + I F+ R +G++ + S+ ++ GLN+GI+F GG + Sbjct: 521 AARKPQGKFIKHDINFLGHRRVFLGVAAVLVCVSLAIVGVKGLNFGIEFVGGTSVSFHNT 580 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V +R+ + D Q + + ++ + T+ V K+ Sbjct: 581 GDVSTEQMRTAFDDAGEPDAVVQTTTADGDQGFLVRTTTTSAEEATQRANQVADKL---G 637 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 + +GP +I+ ++ ++S + ++IYI IRF++ + AI L+ D+ Sbjct: 638 LSTDSFEVTTIGPDWGASVIQSSLIAFLVSIVLIIIYIAIRFEYKMGVTAIVALLHDLVL 697 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 +G +AL G E N +AA+LT++GYS+ D VVV+ R+ NM+ +F + + SIN Sbjct: 698 VMGVYALVGREVNPNTIAALLTILGYSLYDTVVVFHRINDNMQSDDIKCTFMTMANHSIN 757 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + L R+V T++ + I VL M ++GG + FA M G+V + SSI +A+P+ Sbjct: 758 QVLVRTVNTTLTSLIPVLAMLLFGGETLKDFAFAMVIGLVCGSYSSIAVASPLYAMWKTR 817 Query: 827 RAKNARI 833 + ++ Sbjct: 818 EPRYQKL 824 Score = 97.5 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 71/494 (14%), Positives = 147/494 (29%), Gaps = 69/494 (13%) Query: 40 PKNRISLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ- 95 P+ +I+ GLD++GG +VL D D N ++ + S + G ++ Sbjct: 41 PQEKINQGLDIQGGLSVVLTAKSTDGADVTNDDMEKSRAIIESRVNALGASEAVVQVQGT 100 Query: 96 NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 ++I + E+ + + + ++L+ ++ Sbjct: 101 DQILVQIPGLTNTEDALNTIGKTGKLEFARLDSFTDEDAKTKIENG----QYGNEGTVSD 156 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 + + + G+ + ++ I P E + Sbjct: 157 DLGVLTLPTGETQHLKVEDGMYTPIVTGADITKVDIGKPSETSTDYAVNITLDAE----- 211 Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 G + D+ + K+ I + + + V I+ Sbjct: 212 -------------GAKAFADATKELAPTKGKIVIILDNEVQSAPAVQSEIPDGNVQITGG 258 Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335 T G + T + + + Sbjct: 259 YSLDEAKAMQTVLESGSLPVSFEYAQSQTVGPTLGQDALASGVLVALIGLAVVMLYLLFF 318 Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395 G + +++F ++ G ++ F + Sbjct: 319 YRG----------------------------LGLITAAAMIVFAVLYLGILATLSSFGL- 349 Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455 +L+L IAGIVL IG+A DS+IL ER REE R +SV + G Sbjct: 350 --------------FSLSLAGIAGIVLTIGMAADSSILTMERFREEIRMGRSVRAASVTG 395 Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 A T D+++ L++ + LFF +V+GF +T+ L I + + ++ + Sbjct: 396 VRHAIVTSIDADLVTLVSALSLFFLASASVKGFGLTLALGIACDIAMMLLFKAPLIRLLA 455 Query: 516 RYKKMKSIDINPLS 529 + + Sbjct: 456 PKVIARHPGFWGIK 469 >gi|331002526|ref|ZP_08326044.1| hypothetical protein HMPREF0491_00906 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410342|gb|EGG89776.1| hypothetical protein HMPREF0491_00906 [Lachnospiraceae oral taxon 107 str. F0167] Length = 803 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 192/686 (27%), Positives = 324/686 (47%), Gaps = 27/686 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q + ++ ++QR+ E+ + R G +RI I +PG D + + Sbjct: 114 ITYQTVEPNPSDEDMADTIYKLQQRVQNYST-EAEVYREGGNRINIDIPGVSDANAILND 172 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG + F D GN L D+V + + Sbjct: 173 LGKPGSLIFM-------------------DPQGNTVLTGDQVATAKAGIIDNNG-----N 208 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + VV ++F + G++ F + T IG+ +A++ D V +AP + AI G AQI+G + Sbjct: 209 SEYVVSLTFTDEGSKAFEDATAKLIGQQIAIIYDNVVYSAPTVQSAITGGNAQITGMESY 268 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A LA+ +R GSL ++L + VGA LG ++I A + G +++ +FMI ++ Sbjct: 269 EVAKNLASTIRIGSLSLELEELRSNVVGAKLGQEAISTSVKAAIVGFIVLAIFMIAVFLL 328 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G+ + ++ L VIL + LLS TLTLP IAGI+L IG+AVD+N+++ RI+EE Sbjct: 329 PGVASVIALSLYVILEILLLSAFEITLTLPGIAGIILSIGMAVDANVIIFTRIKEEIGLG 388 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 +SV ++++GF +A S I D N+T LIA VL+ G G V+GFA T+ L I++SMFTA+ Sbjct: 389 KSVHEAINLGFKKALSAIIDGNVTTLIAAAVLYLRGSGTVKGFAQTLALGIILSMFTALF 448 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + R ++ I + A + I+ + Sbjct: 449 VTRFVLTAFYNIGLESEKFYGKKLERKPIDFVGMKKITMAVSAVIIIAGIAGAGFNKAKI 508 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 NYGIDFKGG V N L + + + +K Sbjct: 509 GDLFNYGIDFKGGTSTNVTFNEDYSLEQISKEVVPVVESITGEAGTQTQKVEGSNEVIIK 568 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 ++ ++ + + E + +S E+ +V +I+ + ML+YIW Sbjct: 569 TRTLTVDEREKLNSALAEKFGVDAEKITAESISAAVSTEMKADAVVATVIATVLMLLYIW 628 Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 RFK + FA ++ L+ D+ + F+AL T +A +LT++GYS+N +V++DR+ Sbjct: 629 FRFKDFRFATSSVLALVHDVLVVVTFYALLRWSVGSTFIACILTIVGYSINATIVIFDRI 688 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+N K + + ++I+ S+ ETL RS+Y+S+ FI + + + G S I FA+P+ G Sbjct: 689 REN-KALLSRATKEEIINTSVTETLTRSIYSSLTTFIMIFVLFIMGVSSIREFALPIMVG 747 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 IV SS+F+++ + Sbjct: 748 IVAGTYSSVFLSSIFWYIFSNKFENK 773 Score = 57.0 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 3/157 (1%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 +I LGLDL GG + + E + + + +L+ ++ R+ N+I + Sbjct: 99 TGKIKLGLDLAGGVSITYQTVEPNPSDEDMADTIYKLQQRVQNYSTEAEVYREGGNRINI 158 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 I + + + + +L + NN + ++ Sbjct: 159 DIPGVSDANAILNDLGKPGSLIFMDPQGNT---VLTGDQVATAKAGIIDNNGNSEYVVSL 215 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 + E + D + ++ P Q Sbjct: 216 TFTDEGSKAFEDATAKLIGQQIAIIYDNVVYSAPTVQ 252 >gi|299822812|ref|ZP_07054698.1| protein-export membrane protein SecDF [Listeria grayi DSM 20601] gi|299816341|gb|EFI83579.1| protein-export membrane protein SecDF [Listeria grayi DSM 20601] Length = 756 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 188/695 (27%), Positives = 337/695 (48%), Gaps = 28/695 (4%) Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 N V + ++ + +R++ +G++E +I G +RI +QL G +D + R+LL T Sbjct: 51 ANGKGTVDKSTLSDTVSALDRRVNTLGVAEPSITIEGKNRIRVQLAGIKDQTEARKLLST 110 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268 TA++SF G + + ++ ++ + + F T + Sbjct: 111 TAQLSFRDADDKLMMD----GSDLVGGGAKQAFDNNNRPIVT--LKLKSASKFAKVTKEI 164 Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328 + E + + + K L+AP ++Q + + + +I+G+F ++ A Sbjct: 165 LAKAPTQENQLVIWLDHKKGQKYKEERQKEKPAFLSAPNVSQVLDTNQVEITGDFEVKEA 224 Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388 LA +L +G+LP+K+ V +VGA G D++ + A + G++ I +FM+ +Y G Sbjct: 225 KDLANLLNSGALPVKMKEVYSTSVGAQFGQDALNETVMAGLIGVLAIFIFMMAVYRFPGF 284 Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448 VA ++ L L +LSLL ATLTLP IAG++LGIG+AVD+N++ ERI+EE + +S+ Sbjct: 285 VASVTLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKIGRSI 344 Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508 + ++G A+ IFD N T L+ VVLF+FG +++GFA + +SILIS TA+ R Sbjct: 345 KSAFEIGGKEAFRAIFDGNFTTLLVAVVLFYFGTSSIKGFATVLIISILISFLTAVWGSR 404 Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISIL 555 ++ F I + R I F++ + + Sbjct: 405 LLLRFAIDSNFLNKRPGWFAVRKDEIYDLHEDISTFKLKTHFDRFDFVKHHRGFLWTFAV 464 Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 +I + LL +N GIDF G + V A+ + + V+ +L+ + + + ++ Sbjct: 465 ITIAGVILLSVFKMNLGIDFSSGTRADVTADHTLTAAAVQKDLKEINMPAETIVLQGKDQ 524 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675 V + K K + V P + +EL + G + + Sbjct: 525 KVAVVSYKGALSQQEIAKFKAEFKSKYG------HEPSISTVTPTVGKELAKNGFWALGV 578 Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 ++I ++IYI IRF+ Y + AI +L+ D FF++F +E +LT +AAVLT+IGYS+N Sbjct: 579 ASILLVIYIGIRFELYMGIAAILSLLFDAFVIFIFFSIFRLEVDLTFIAAVLTVIGYSIN 638 Query: 736 DKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 D +V DR+R MK + T ++ ++ +T RS+ T + +V+ + +G S Sbjct: 639 DTIVTADRIRDISKQMKRFKTKEEIASSVNSALRQTFTRSINTILTVIFTVVALVAFGSS 698 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 I +F+I + G++ + SSIF+A + + Sbjct: 699 SILNFSIALLVGLISSVFSSIFMAMQLWYVFKVRQ 733 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 96/260 (36%), Gaps = 9/260 (3%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + + + + + R + + + + ++ ++ Sbjct: 169 PTQENQLVIWLDHKKGQKYKEERQKEKPAFLSAPNVSQVLDTNQVEITGDFEVKEAKDLA 228 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 +L + + VG + ++ + + ++ +I +A+ I++ +++ Sbjct: 229 NLLNS-----GALPVKMKEVYSTSVGAQFGQDALNETVMAGLIGVLAIFIFMMAVYRFP- 282 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 A TL+ L +L L +A ++ IG +V+ V+ Y+R+++ +K+ Sbjct: 283 GFVASVTLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKI-- 340 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 S + + E + + + + +G S I FA + I+++ ++ Sbjct: 341 -GRSIKSAFEIGGKEAFRAIFDGNFTTLLVAVVLFYFGTSSIKGFATVLIISILISFLTA 399 Query: 813 IFIAAPILLFIYDWRAKNAR 832 ++ + +L F D N R Sbjct: 400 VWGSRLLLRFAIDSNFLNKR 419 Score = 74.3 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 80/744 (10%), Positives = 196/744 (26%), Gaps = 48/744 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + + L ++ G++ + I+LGLDL+GG ++ +V+ Sbjct: 3 KKSRIVAFLLALAIIFGVVFGTAKVVLS-------------HINLGLDLQGGFEVLYQVE 49 Query: 62 ED----DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116 L L + G+ S+ N+I + A + + ++ Sbjct: 50 PANGKGTVDKSTLSDTVSALDRRVNTLGVAEPSITIEGKNRIRVQLAGIKDQTEARKLLS 109 Query: 117 LFLQGVNSKLNVDPKKNLL--------VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168 Q + + IV + + ++ + Sbjct: 110 TTAQLSFRDADDKLMMDGSDLVGGGAKQAFDNNNRPIVTLKLKSASKFAKVTKEILAKAP 169 Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228 + +Q+ + + ++ P+ L + + + + + Sbjct: 170 TQENQL----VIWLDHKKGQKYKEERQKEKPAFLSAPNVSQVLDTNQVEITGDFEVKEAK 225 Query: 229 GVRFLRDSDGNQYLVEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 + L +S +++ S G N V F M A F Sbjct: 226 DLANLLNSGALPVKMKEVYSTSVGAQFGQDALNETVMAGLIGVLAIFIFMMAVYRFPGFV 285 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 ++ L +L+ +P I G A ++ + I +I Sbjct: 286 ASVTLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKIGRSIK 345 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-LTLALLS 406 +G +I+ G + V++ F + V SI ++ + Sbjct: 346 SAFEIGGKEAFRAIFDGNFTTLLVAVVLFYFGTSSIKGFATVLIISILISFLTAVWGSRL 405 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LL + + + D ++E I K T Sbjct: 406 LLRFAIDSNFLNKRPGWFAVRKDEIYDLHEDISTFKLKTHFDRFDFVKHHRGFLWTFAVI 465 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS----IVRAMMIFIIRYKKMKS 522 I +I V G + A+ + I+ K + Sbjct: 466 TIAGVILLSVFKMNLGIDFSSGTRADVTADHTLTAAAVQKDLKEINMPAETIVLQGKDQK 525 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + +G SI ++ + + + + Sbjct: 526 VAVVSYKGALSQQEIAKFKAEFKSKYGHEPSISTVTPTVGKELAKNGFWALGVASILLVI 585 Query: 583 ---VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + + ++ + S L + I F F E + + + Sbjct: 586 YIGIRFELYMGIAAILSLLFDAFVIFIFFSIFRLEVDLTFIAAVLTVIGYSINDTIVTAD 645 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKW 690 + + + E + ++ L + + + + + F Sbjct: 646 RIRDISKQMKRFKTKEEIASSVNSALRQTFTRSINTILTVIFTVVALVAFGSSSILNFSI 705 Query: 691 YFALGAITTLILDITKTLGFFALF 714 +G I+++ I + + +F Sbjct: 706 ALLVGLISSVFSSIFMAMQLWYVF 729 >gi|266619977|ref|ZP_06112912.1| putative protein-export membrane protein SecDF [Clostridium hathewayi DSM 13479] gi|288868441|gb|EFD00740.1| putative protein-export membrane protein SecDF [Clostridium hathewayi DSM 13479] Length = 726 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 166/670 (24%), Positives = 290/670 (43%), Gaps = 19/670 (2%) Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230 +D+ + D + + F Sbjct: 55 LDRAPTEAEVTAARNIMESRLDDKNILDREVTADIDRGYVIVRFPWKSGETQFNPEAAIA 114 Query: 231 RFLRDSDGNQYLVEDKVEISGIHLN--GATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 ++ + + G ++ + + V++ F E GA++F + T Sbjct: 115 ELGEMANLTFRDEAGNIMLEGRDVSTSSPVESGGTGLKQYAVELHFTEEGAKKFEDATGK 174 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 G+ + + +D +++ PV+ I G A I G + A L+ + AG+LP + Sbjct: 175 LTGQRMGIFMDDVMISNPVVKDRITGGNAIIDGMESYGEAKELSDKINAGALPYSMATRN 234 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 + LGS ++ A +A VL+ +FM++ Y G VA + + L L +S+ Sbjct: 235 FSTISPSLGSAALDIMMGAGIAAFVLLCIFMVIKYRLPGFVACLGMAFQMCLQLLAISVP 294 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 TLTLP IAGI+L +G+AVD+N+++NERI EE R S+ ++ G+ RAYS++ D NI Sbjct: 295 QYTLTLPGIAGIILSLGMAVDANVIINERIGEELRDGSSLRDAVLAGYKRAYSSVMDGNI 354 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T+ I V+L FG G + F T+ I+I++ + + +++ +++ S Sbjct: 355 TSAIVAVILMIFGSGPMLSFGYTLLAGIIINVVIGVYYSKVVLLSLVKEGCFSSPGWFRY 414 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + I FM+ R + IS L +G++ F GG L Sbjct: 415 KKEQRIYQ-----FMKHRKVWLSISAAALFLGFLGLARNGVSLDTQFTGGTTLKYEIQEE 469 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI---TEI 645 D + S+L ++S Q + + + + + Sbjct: 470 TDSERLASSLGEALGRNVSVQFTREDGQGRQSMVVTFAGKEGISPQEQKQATDLIHREYG 529 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY----FALGAITTLI 701 + + T V P I ++ + + I+ + ++A+ + +Y+WIRF L A+ L+ Sbjct: 530 EMNAELSETYSVQPYIGQQALNRSIIAMGLAAVLITLYVWIRFSILSGLSAGLAAMAALV 589 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 D+ G F +F I N VA VLT+IGYS+ND +V+YDR+R+NM+ L+ Sbjct: 590 HDVLIVFGVFLVFAIPLNDAFVAVVLTIIGYSINDTIVIYDRIRENMRKGE-GKDIFWLV 648 Query: 762 DKSINETLGRSVYTSMAAFISVLPM----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817 D S++++L RSVYTS+ I VL + + I F++PM FGIV SS+ IA+ Sbjct: 649 DMSVSQSLSRSVYTSVTTVIGVLILVAVSWYYQIPSIFEFSLPMLFGIVSGCFSSVCIAS 708 Query: 818 PILLFIYDWR 827 + R Sbjct: 709 ILWALWVKKR 718 Score = 45.1 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 61/208 (29%), Gaps = 27/208 (12%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++L +I + L + + G+D+RGG V E Sbjct: 5 RKSLAAMLLLLVISAAVVWFGLGD-----------EIKGARDMRFGIDIRGGVEAVFEPV 53 Query: 62 EDD--FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK--ITLSFADSR-----FKENIA 112 D + + + S L + I + ++ + + F E Sbjct: 54 GLDRAPTEAEVTAARNIMESRLDDKNILDREVTADIDRGYVIVRFPWKSGETQFNPEAAI 113 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ--SMEIIRQR 170 ++ + ++ + ++ + +A+E + E ++ Sbjct: 114 AELGEMANLTFRD-----EAGNIMLEGRDVSTSSPVESGGTGLKQYAVELHFTEEGAKKF 168 Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQD 198 D G + ++I P +D Sbjct: 169 EDATGKLTGQRMGIFMDDVMISNPVVKD 196 >gi|294810981|ref|ZP_06769624.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces clavuligerus ATCC 27064] gi|326439676|ref|ZP_08214410.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces clavuligerus ATCC 27064] gi|294323580|gb|EFG05223.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces clavuligerus ATCC 27064] Length = 763 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 193/710 (27%), Positives = 346/710 (48%), Gaps = 36/710 (5%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 I + + + + A ++++E++RQR+D +G++E ++ R G RI+++LPG +DP Sbjct: 33 GTRIVLETRDSPTVRADADATDRTLEVLRQRVDALGVAEPSLARSGERRIVVELPGVRDP 92 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV----RFLRDSDGNQYLVEDKVEISGIHLN 255 + +++G TA++SFH V+ G +L ++G + Sbjct: 93 AEAAEVIGRTAQLSFHPVVEAAPGPASGPGADGSRVLPDPETPTGFLRLGPTALTGDGVR 152 Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR-------------V 302 A A D + + + +T + + Sbjct: 153 DAEAVLDTASGRGWTVGLSFRGDGAEWARLTGEAACAAPGSPARRVAIVLDDAIVSAPAM 212 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + IPSG AQI+G F + A LAA+++ G+LP+ + VE+ VG LG+++I Sbjct: 213 ERSVPCGTGIPSGSAQITGGFGADGARDLAALVKGGALPVPVTAVEQSVVGPTLGAEAIR 272 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 A V GLV F+I +Y G +A ++ L +++ A + LGATLTLP +AG VL Sbjct: 273 ASAWAAVIGLVCTGAFIIAVYRLVGALAALALVLYGVISYAAVVALGATLTLPGLAGFVL 332 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCS-------LDMGFSRAYSTIFDSNITALIATV 475 IG+AVD+N+L ER REE + + + L +GF +A+S + DS++T L+A Sbjct: 333 AIGIAVDANVLAFERAREEYARARRGRTASTDLRRPLRVGFDQAWSAVTDSHVTTLLAAG 392 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP----LSRF 531 +LF F G V+GF +T+ + +L S+ +A+ I R + +R ++ R Sbjct: 393 LLFVFATGPVKGFGVTLAIGVLASLVSAMVITRLFADWAVRRGPVRRRPAWTGLTVRGRV 452 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 + + + MR R +G + +C++ + GL +G++F GG Q+ A +PVD Sbjct: 453 RTLLERRPPRLMRYRRRWLGGCLGLLLCALAGIGVRGLEFGVEFTGGRQIQYTAGQPVDA 512 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 R + Q R E ++ + + T+ Sbjct: 513 DRARQAVADAGFPRAVVQKTGERG-------ITVRTGELDNRGQETIRAALGTVAGEVTV 565 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + E +GP + EL R ++ + ++ A L+Y+ RF+W FA+ A+ + D+ +G F Sbjct: 566 ERDETIGPSLGSELRRHALIALGVAVAAQLLYLTARFRWTFAVAAVAAMAQDVLLVVGLF 625 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A G + +AA+LT++GYSVND VVV DR+R+ + ++ +L D+++ +TL R Sbjct: 626 AWLGKPVDSVFLAALLTVVGYSVNDTVVVLDRLRELRRSAPRG-TWPELADRAVAQTLPR 684 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 +V T M A ++ +AV GG + F++ + G+V+ +S++F A P+++ Sbjct: 685 TVNTGMGALFVLVSLAVLGGDSLADFSVALLAGVVLGTASTVFTAMPLVV 734 Score = 71.3 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 54/214 (25%), Gaps = 10/214 (4%) Query: 43 RISLGLDLRGGSHLVLEV-DEDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-I 98 LGLDLRGG+ +VLE D + LR + G+ S+ + + I Sbjct: 23 PPRLGLDLRGGTRIVLETRDSPTVRADADATDRTLEVLRQRVDALGVAEPSLARSGERRI 82 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 + R A+ + Q + + + + + Sbjct: 83 VVELPGVRDPAEAAEVIGRTAQLSFHPVVEAAPGPASGPGADGSRVLPDPETPTGFLRLG 142 Query: 159 AIEQSMEIIRQRIDQIGISEST-IQRLGSHRILIQLPGEQDPSRLRQLLGTTAK-----M 212 + + +R + + S R G+ A+ + Sbjct: 143 PTALTGDGVRDAEAVLDTASGRGWTVGLSFRGDGAEWARLTGEAACAAPGSPARRVAIVL 202 Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 V ++ G S Sbjct: 203 DDAIVSAPAMERSVPCGTGIPSGSAQITGGFGAD 236 >gi|262340882|ref|YP_003283737.1| bifunctional preprotein translocase subunit SecD/SecF [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272219|gb|ACY40127.1| bifunctional preprotein translocase subunit SecD/SecF [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 904 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 200/803 (24%), Positives = 369/803 (45%), Gaps = 61/803 (7%) Query: 60 VDEDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113 V+ F+ ++ + LRS + + G+ ++++ N+I + + + + I + Sbjct: 126 VEIKTFLKEKIELSIISIQNILRSRIDQFGVLQPNIQRIKNSNRILIELSGIKDVDRIKN 185 Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 + + + + + + ++ I+ R+ + Sbjct: 186 ILEKKAELHFFETYNFQEVFPYFKKID--------KFFHKKLNKSFIDVLNISTRKSNNI 237 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 +G + L + F N+ +F V+ Sbjct: 238 VGFI-------HKKHKKVISEFLNSIEATEALPYNLHNVKFLWGNSINNNFLQLFAVKIN 290 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 + E ++G + A +F P + V+I ++ G +++ T NIGK Sbjct: 291 NE--------ETYSYLNGDVVTRAYKSFGPFN-EISVNIKMNQEGTKKWKIFTEKNIGKN 341 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 +A+VLD V P++ I +G +QISG+F+I+ + L +L AG LP +NIV+ VG Sbjct: 342 IAIVLDDFVYANPLVQSVITNGMSQISGHFSIQESNDLVNVLNAGELPTSVNIVQTEIVG 401 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 LG +SI+KG + + L + +MI Y GL +D + N+I +L + A LT Sbjct: 402 PSLGKESIHKGMKSFLIALFFVFFWMIFHYSIPGLYSDIILIFNIIFIFGILISINAVLT 461 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM--GFSRAYSTIFDSNITAL 471 P IAGI+L + +++D+NIL+ E+I+E R S+F S+ F A S+I D IT L Sbjct: 462 FPGIAGIILTLAMSMDANILIYEKIKENIRNKISIFTSIHNSYTFQGALSSIIDGQITTL 521 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 + ++LF+FG G ++GF+ T+ + I+IS+FT+ + R ++ + ++ + + Sbjct: 522 LCGIILFYFGTGPIQGFSTTLIIGIIISVFTSTCLGRLLLEWHLKKYQNITFGNKMFINV 581 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 F I F+ R W IS + I S+ + GLN G+DF GG +L +R + Sbjct: 582 FHKIQNIQWDFLSKRKWYYMISSILLIISVFSMVFKGLNLGLDFVGGRSYVILFDRKMIP 641 Query: 592 SVVRSNLESLQIGD-----ISFQNFDGEKNFLVRLQYQPGDSV--AQTRVLEMVKKKITE 644 + L + + + F E + +Y+ + +L+ + + + Sbjct: 642 EKISEILSKTFLEKGRPSFPNVKTFGNENQLKIVTKYKIWEENHKIDEEILQKMFISLKD 701 Query: 645 IVPLSTIQNT---------------EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688 P+ E V P I++++ K + +IIS I + +YI+IRF Sbjct: 702 YFPIHFHFRDFKNIEKDKPLGVLSSEKVEPTIAKDMKDKSFISIIISLIGIFLYIFIRFQ 761 Query: 689 KWYFALGAITTLILDITKTLGFFALFG-----IEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 KW F LGA+ +LI D LG ++ F +E + + +AA+LT+IGYS+ND V+VYD+ Sbjct: 762 KWQFGLGAVVSLIHDSVIVLGIYSFFYGKFPILEIDQSFIAALLTIIGYSINDTVIVYDQ 821 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 +R + T+S + + I+ I +L R++ TS+ + + + ++GG+ + SF + + Sbjct: 822 IR-KISKKTSSSTMKQTINTGIVNSLTRTINTSLITLLVISIIFLFGGAPLRSFMLALFL 880 Query: 804 GIVVAASSSIFIAAPILLFIYDW 826 G+ + SSIFIA I+ Sbjct: 881 GVSIGTYSSIFIAPSIVYDFCKK 903 Score = 45.8 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 13/187 (6%) Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100 K ++LGLDL GG ++L+V E + F + + F+K ++ N L Sbjct: 33 KKTLNLGLDLEGGISIILDVSEKYLLKKFSENSQNPF--FIKALEYADQKKKENPNADYL 90 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 SF + F L S ++ + + ++ + +++ I Sbjct: 91 SFFINFF---------DQLNIHLSSPDLFGNRFNIEKIDSNSSNVEIKTFLKEKIELSII 141 Query: 161 EQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219 I+R RIDQ G+ + + S+RILI+L G +D R++ +L A++ F + Sbjct: 142 SIQN-ILRSRIDQFGVLQPNIQRIKNSNRILIELSGIKDVDRIKNILEKKAELHFFETYN 200 Query: 220 NNSKKGF 226 + Sbjct: 201 FQEVFPY 207 >gi|229825162|ref|ZP_04451231.1| hypothetical protein GCWU000182_00513 [Abiotrophia defectiva ATCC 49176] gi|229790534|gb|EEP26648.1| hypothetical protein GCWU000182_00513 [Abiotrophia defectiva ATCC 49176] Length = 737 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 195/686 (28%), Positives = 338/686 (49%), Gaps = 18/686 (2%) Query: 154 QVISHAIEQSMEIIRQRI-DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 + A E + I + R+ +I +ES + + G +R+++ +P +D + + LG+T + Sbjct: 61 KAKPTATEMADTIEKMRLRAEIFSTESEVYQEGLNRVVVDIPDVKDADAVLKQLGSTGSL 120 Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272 F V N S + + + + V + + +V++ Sbjct: 121 QFIPVEGNISFVDGKYKLNKSIEELVQEKKVSVDGADIATAKAQSRKQESGVGIEYIVEL 180 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 + GA +F + T++N+GK +A+V DG V++AP + I GKAQISG ++E A LA Sbjct: 181 ELNAKGANKFAKATKENLGKQIAIVYDGNVISAPTVQTVITEGKAQISGQSSMEEAERLA 240 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392 +++R G+LP++L V VGA LG ++ A + G ++ LFMI +Y GL + Sbjct: 241 SIIRVGALPLELKEVRSSVVGAKLGDTALETSLLAGLIGFAIVFLFMIFVYKIPGLASSL 300 Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452 ++ V++ L LL LL TLTLP IAGIVL IG+AVD+N+++ RI+EE +SV ++ Sbjct: 301 ALIAYVVIELVLLQLLQITLTLPGIAGIVLSIGMAVDANVIIFTRIKEEIGLGKSVRSAI 360 Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 GF +A S I D NIT +IA +VL FG G ++GFA T+ L I+ISMFTA+ I + ++ Sbjct: 361 GNGFKKALSAIIDGNITTIIAAIVLGIFGTGTIKGFAYTLALGIIISMFTALFITKFLLF 420 Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG---- 568 + + + D F++ +S++ I + + Sbjct: 421 SFYD------LGFDTEKYYGTKVDKENKPFLKFAPKAYILSLIVIGVGIATMIFNAAGGK 474 Query: 569 --LNYGIDFKGGIQLGVLANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 +Y ++F GG V+ V + N + I + V ++ + Sbjct: 475 GAFDYALEFSGGTSTEVVFEGGKVPGNDEIRNFVNGIIPSSNADVTQIVGEDAVVIKTKS 534 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +T++ E +K E + +S E+ R ++ VI + I MLIYI Sbjct: 535 LNEEERTKLRESFVEKYK---VSKDNITNENISGAVSGEMKRSALMSVIAATICMLIYII 591 Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 IRF+ F A+ LI D+ +AL + T +A +LT++GYS+N ++++DR+ Sbjct: 592 IRFRNVAFGTSAVLALIHDVLVVATLYALIRMNVGNTFIACMLTIVGYSINATIIIFDRI 651 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+NM + +++DKSI +T RS+ T++ I V + + G S + F++P+ G Sbjct: 652 RENMAEKKRGETVAEIVDKSITQTFSRSINTTVTTLIMVAVLFIMGVSSVREFSLPIIVG 711 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A SSI I + + + Sbjct: 712 LICGAYSSICITGTLWYSFVRKKIEK 737 Score = 49.7 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 28/82 (34%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 I GLDL GG + E + + +++R + ++ N++ + Sbjct: 41 RGIKRGLDLAGGVSITYETVKAKPTATEMADTIEKMRLRAEIFSTESEVYQEGLNRVVVD 100 Query: 102 FADSRFKENIADKVTLFLQGVN 123 D + + + ++ Sbjct: 101 IPDVKDADAVLKQLGSTGSLQF 122 >gi|225377732|ref|ZP_03754953.1| hypothetical protein ROSEINA2194_03383 [Roseburia inulinivorans DSM 16841] gi|225210409|gb|EEG92763.1| hypothetical protein ROSEINA2194_03383 [Roseburia inulinivorans DSM 16841] Length = 719 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 208/695 (29%), Positives = 333/695 (47%), Gaps = 28/695 (4%) Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200 + Q + + + ++ +++R+D S Q RI +++PG QD + Sbjct: 46 SGGVSITYQVVDENPSAEDMSDTIYKLQKRVDSYSTEASVYQVG-DDRITVEIPGVQDAN 104 Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 + + LG + F + G M GATA Sbjct: 105 EILEDLGNPGSLEFQMPDGSVFMTGDMV-----------------------EDAQGATAT 141 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320 + +V + + GA+ F EVT +NIGK L +V DG ++ P + AI G+AQI+ Sbjct: 142 DRYGNKQYIVSLKLTDEGAKIFGEVTSENIGKNLPIVYDGETISYPQVQSAITGGEAQIT 201 Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380 G + E A LA +R GSL ++L+ +E VGA LGS +I A GL ++++FMI Sbjct: 202 GMSSFEEADNLATQIRIGSLSLQLSELESSVVGAQLGSQAIASSLKAGAIGLAIVMVFMI 261 Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440 V+Y G+ A ++ + L +A L L TLTLP IAGI+LGIG+AVD+N++V RIRE Sbjct: 262 VMYAVPGIAASLALAIYTTLVIATLYLFDITLTLPGIAGIILGIGMAVDANVIVFARIRE 321 Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500 E +SV S+ +GF +A S I D NIT LIA+VVL G G V+GFA T+ + I++S+ Sbjct: 322 EIATGKSVQTSMKIGFQKAMSAILDGNITTLIASVVLMALGSGTVKGFAYTLMIGIILSL 381 Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560 FTA+ + R ++ + I + + L S+ Sbjct: 382 FTAMVVTRYILYSLYALGLKSEKLYGRAKERKSIDFIGKKAVFFTISGIIIAAGLISMGV 441 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 LNYG+DF GG + + + + +++ + K Sbjct: 442 HSATEGKALNYGLDFMGGTSTTADFGKDMTIEDIENDIVPYVEKVTGDSDVQATKVEGTT 501 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 +++ E+ ++ ++ + IS E+ + VI+S I M Sbjct: 502 QVTIKTRTLSLDERQELEDTLAENCDVDASTITSQSISSTISGEMRSDALKAVIVSCIFM 561 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 L+YIW RFK FA AI L+ D+ + +AL I T +A VLT++GYS+ND +V Sbjct: 562 LLYIWFRFKDIRFAASAILALVHDVLVVITVYALVRISVGSTFIACVLTIVGYSINDTIV 621 Query: 740 VYDRMRKNMKLYTTSIS---FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796 ++DR+R+N+ L T + R++ +KS+ +TL RS+ TS+ FI V+ + + G + I Sbjct: 622 IFDRIRENLALKTGKQTAEELREVANKSLTQTLSRSINTSITTFIMVVMLYILGVASIRD 681 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F++P+ G+V A SSI IA + + KN Sbjct: 682 FSLPLMAGLVCGAYSSICIATELWYVMKVHLGKNK 716 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 102/252 (40%), Gaps = 11/252 (4%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 V + + + E++ + GE ++ D++A + + + Sbjct: 165 EVTSENIGKNLPIVYDGETISYPQVQSAITGGEAQITGMSSFEEADNLATQIRIGSLSLQ 224 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 ++E+ +VG ++ + I + I +++++ + + + A L Sbjct: 225 LSELES-------SVVGAQLGSQAIASSLKAGAIGLAIVMVFMIVMYAVP-GIAASLALA 276 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 + T + LF I L +A ++ IG +V+ V+V+ R+R+ + T S + + Sbjct: 277 IYTTLVIATLYLFDITLTLPGIAGIILGIGMAVDANVIVFARIREEIA---TGKSVQTSM 333 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + + + ++ I+ + + G + FA + GI+++ +++ + IL Sbjct: 334 KIGFQKAMSAILDGNITTLIASVVLMALGSGTVKGFAYTLMIGIILSLFTAMVVTRYILY 393 Query: 822 FIYDWRAKNARI 833 +Y K+ ++ Sbjct: 394 SLYALGLKSEKL 405 Score = 70.1 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 7/147 (4%) Query: 1 MRNNPWLVILYSMICCI-GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + VIL ++ GL L + + I LGLDL GG + + Sbjct: 1 MKKSKAAVILAVILAAFVGLAYYASIILSSTGVGE------DMSIPLGLDLSGGVSITYQ 54 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 V +++ + +L+ + + ++IT+ + I + + Sbjct: 55 VVDENPSAEDMSDTIYKLQKRVDSYSTEASVYQVGDDRITVEIPGVQDANEILEDLGNPG 114 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + + + Sbjct: 115 SLEFQMPDGSVFMTGDMVEDAQGATAT 141 >gi|326792540|ref|YP_004310361.1| protein-export membrane protein SecD [Clostridium lentocellum DSM 5427] gi|326543304|gb|ADZ85163.1| protein-export membrane protein SecD [Clostridium lentocellum DSM 5427] Length = 725 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 176/672 (26%), Positives = 311/672 (46%), Gaps = 18/672 (2%) Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230 +D+ S+ + D + F Sbjct: 54 LDRAATSDELNAARSVIETRLDNKNILDREVTIDKKNGRIIVRFPWKSDEAEFNPEKAIS 113 Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 + E + I G + + A D +T++ +V + F+ GA+ F E T I Sbjct: 114 ELGETARLTFRDSEGNILIEGKDVKSSRAVMDQQTNQYMVQLVFNAEGAKLFEEATAKLI 173 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 G+ L + +D ++ P++NQ I G+ I G FT++ A LA + +G+LP + Sbjct: 174 GQQLFIFMDETYISGPMVNQKISGGEGVIEGTFTLDQAQDLAEKISSGALPFSMTATSHN 233 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 + LGS ++ A + LI LFM+V Y G ++ ++ L + + + LS+ Sbjct: 234 TISPSLGSGALKVMVMAGITAFALICLFMLVFYRLPGFISCIALTLQLAVQILALSVPQF 293 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAGI+L +G+ VD+N+++NERI EE R +S+ +L G+SRA++++FD NIT Sbjct: 294 TLTLPGIAGIILSLGMGVDANVIINERIGEELRSGKSLPLALKSGYSRAFASVFDGNITT 353 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530 I ++L G G + F T+ + I+++ I +++ +I +K ++I Sbjct: 354 AIVAIILMALGSGTMLSFGYTLLVGIVLNFIAGIYTTHKLLLSLINFKAFRNI-----KL 408 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + L + I F + R+ ISI+ + I F +G+ FKGG L ++ Sbjct: 409 YHLPKERKTIPFYKKRWGLYSISIVLMVIGIASCFINGIALDTTFKGGAMLTYTYTGDLN 468 Query: 591 LSVVRSNLESLQIGDISFQNF---DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + V S +++ Q ++ +V A+ +V Sbjct: 469 VEDVSRLATSTLNRNVTGQITEDLGNKQQKIVLSLAGTDSLNAKDQVKLDEALDKAYAAN 528 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILD 703 + + +V P I +E + + I+ ++I+ +++Y+W+RFK A+ L D Sbjct: 529 KLELSESYMVEPYIGKETLIRSIMSLVIALALIVVYVWVRFKKIGGLSAGAMALVALGHD 588 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I F + I + +A LT+IGYS+ND VV+YDR+R+NM L + ++ L+D Sbjct: 589 ILVIFFTFVVLRIPLDTNFIAVALTIIGYSINDTVVIYDRIRENMALNSKNMEV--LMDD 646 Query: 764 SINETLGRSVYTSMAAFISVLPMAV----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 S+ +TL RS+ TS+ ISVL M + +G I FA+PM G++ SS+ +A P+ Sbjct: 647 SLTQTLTRSINTSVTTSISVLIMYIFAYVFGIESIKVFALPMMMGVLSGCFSSVCLAGPL 706 Query: 820 LLFIYDWRAKNA 831 + + + N Sbjct: 707 WVSWKNSKKFNK 718 Score = 56.6 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 31/254 (12%), Positives = 78/254 (30%), Gaps = 29/254 (11%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59 M+ + + I L++A+ P + G+D+RGG + E Sbjct: 1 MKAKKYTFFIIVAIIIGLLILAVFGA---------PHVKGAKEMRFGIDIRGGVEAIYEP 51 Query: 60 VDED-DFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRF-----KENI 111 VD D + L + + L + I ++ + +I + F E Sbjct: 52 VDLDRAATSDELNAARSVIETRLDNKNILDREVTIDKKNGRIIVRFPWKSDEAEFNPEKA 111 Query: 112 ADKVTLFLQGVNSKLNVDP----------KKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 ++ + + + + T + + +V + + Sbjct: 112 ISELGETARLTFRDSEGNILIEGKDVKSSRAVMDQQTNQYMVQLVFNAEGAKLFEEATAK 171 Query: 162 QSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 + + +D+ IS Q++ +I+ D ++ ++ + F + Sbjct: 172 LIGQQLFIFMDETYISGPMVNQKISGGEGVIEGTFTLDQAQDLAEKISSGALPFSMTATS 231 Query: 221 NSKKGFMFGVRFLR 234 ++ G L+ Sbjct: 232 HNTISPSLGSGALK 245 >gi|293400504|ref|ZP_06644649.1| protein-export membrane protein SecDF [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305530|gb|EFE46774.1| protein-export membrane protein SecDF [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 762 Score = 278 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 181/711 (25%), Positives = 333/711 (46%), Gaps = 40/711 (5%) Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201 I+ + +D ++ E + +R+D +G++E I G++RI +QL G ++ + Sbjct: 40 GFEILYEVSPLDGKKMPSMSAVAESVNKRVDVLGVNEPDITVEGNNRIRVQLAGVKNADQ 99 Query: 202 LRQLLGTTAKMSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258 R+++ +TA ++F V ++ G D GN + + S Sbjct: 100 ARRVISSTANLTFRDVNDNLLMDASVLKEGGASVTTDQYGNPVVSLKLADQS-------- 151 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQ 318 F T K + + + ++A + + I S AQ Sbjct: 152 -KFYEVTKKVAAMGDGQNLMVAWLDFDQATDSYAAEKTKEKPKYISAASVKEGINSTSAQ 210 Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378 ISGNF+ + A L ++ +GSLP+K+ V AD G D+ A G+ LI+LF Sbjct: 211 ISGNFSKDEANELKDLINSGSLPVKMVESYSNAVTADYGIDAFSTTMMAGAVGIALIMLF 270 Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438 MI+ Y G+++ +I V + + +L+GA TL IA +VLG+G+AVDSNIL ERI Sbjct: 271 MILYYRLPGVISAITIASYVFVVFLINNLMGAVFTLSGIAALVLGVGMAVDSNILTFERI 330 Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498 R+ +SV + G S+++ TIFD+ T I+ ++LF FG G+V+GFA + +S + Sbjct: 331 RDALYSGRSVKTAFYEGSSKSFVTIFDAQFTTFISALILFIFGTGSVKGFATMLIVSTIS 390 Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA------------IQFMRAR 546 ++ + + + ++ ++ K+ + IP F+ Sbjct: 391 TLLVIVFVAKFLLKMLVDSGKLDDKKSWFGVKKNQIPSVANGESRFYYGRFKGFDFVGKA 450 Query: 547 FWGVGISILFSICSICLLFTHGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 + + S+ + +I + +G N+GIDF G ++ V ++ + +++ L+S Sbjct: 451 KYFIFTSLTIMVIAIGCMGFNGFKGDGILNFGIDFTSGTKITVQSDSAIKADELKTQLKS 510 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 L I S + + + ++ + +K + V P Sbjct: 511 LGIHANSVKINGDKNEIAHVFVKEAVNTSTMEKAKTALKATYK------HDVSDSTVTPV 564 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 I REL+RK IV +++ I ++IYI +RFKW +AL I LI D+ L F A+F +E N Sbjct: 565 IGRELVRKAIVISVLAWIGVMIYISLRFKWDYALSGIIALIHDVFIILCFCAIFRLEVNT 624 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMR----KNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 +A +L +IGYS+N+ +VV+DR+R +N + ++++++ ++ T RS+ ++ Sbjct: 625 EIIAVMLAIIGYSINNSIVVFDRIRDQVKENRHEKLDQVKYKEIVNIALQNTATRSILST 684 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + V+ + G + I +F + + G++ A SS+FIAA + + Sbjct: 685 FTTVLPVICLLGLGSNAIFTFCLALFIGLIAGAGSSLFIAAQVWYQLRMRE 735 Score = 65.9 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 43/421 (10%), Positives = 117/421 (27%), Gaps = 24/421 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + +V +++ + +++ + K+ + LGLDL+GG ++ EV Sbjct: 1 MKKSRLVVFGITVLTILAVIVTCSGMI-------------KDNMRLGLDLQGGFEILYEV 47 Query: 61 DEDDFVNG-FLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLF 118 D + ++ + + G+ + + N+I + A + + ++ Sbjct: 48 SPLDGKKMPSMSAVAESVNKRVDVLGVNEPDITVEGNNRIRVQLAGVKNADQARRVISST 107 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 +N + + E S+ Q V +QS + Sbjct: 108 ANLTFRDVNDNLLMD-ASVLKEGGASVTTDQYGNPVVSLKLADQSKFYEVTKKVAAMGDG 166 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM-------SFHKVLPNNSKKGFMFGVR 231 + + ++ + + A + S + + Sbjct: 167 QNLMVAWLDFDQATDSYAAEKTKEKPKYISAASVKEGINSTSAQISGNFSKDEANELKDL 226 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 S + + ++ + A + + I + R V Sbjct: 227 INSGSLPVKMVESYSNAVTADYGIDAFSTTMMAGAVGIALIMLFMILYYRLPGVISAITI 286 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 V+ + A + G + IL +L ++ Sbjct: 287 ASYVFVVFLINNLMGAVFTLS-GIAALVLGVGMAVDSNILTFERIRDALYSGRSVKTAFY 345 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 G+ +I+ +++ +F + + S +++ + + L Sbjct: 346 EGSSKSFVTIFDAQFTTFISALILFIFGTGSVKGFATMLIVSTISTLLVIVFVAKFLLKM 405 Query: 412 L 412 L Sbjct: 406 L 406 >gi|158424518|ref|YP_001525810.1| preprotein translocase subunit SecD [Azorhizobium caulinodans ORS 571] gi|158331407|dbj|BAF88892.1| SecD export membrane protein [Azorhizobium caulinodans ORS 571] Length = 535 Score = 277 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 213/534 (39%), Positives = 317/534 (59%), Gaps = 9/534 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + L ++ G+L A+PN LP S+L PS + +R++LGLDL+GGSH++LEV Sbjct: 2 LHFSRLKTALILLVTAFGILFAVPNLLPASVLQHLPSWLANSRVTLGLDLQGGSHILLEV 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + D++R L+ IG + I L D +N ++ Sbjct: 62 DSAAVRKERAEQVRDDVRRVLRDAKIGYTGLAIRDTTIQLRLRDPNDTQNALTELRKLAT 121 Query: 121 GVNSKL---NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 V + N + + + +I++ L++ I+ + A++QS+EIIR+RIDQ+G Sbjct: 122 PVVNAFLGGNTGENDITVSSGADGQITVSLTEAGINARVRSAVDQSIEIIRRRIDQLGTV 181 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236 E TIQR G+ RIL+Q+PG QDP RL+ LLG TAK+SF V + S + M G Sbjct: 182 EPTIQRQGADRILVQVPGLQDPQRLKALLGQTAKLSFRMVDQSMSPQQAMEGRPPPESEV 241 Query: 237 ----DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 +G YLVE +V +SG L A FD + +P+V F+ GA+RF T++ +G+ Sbjct: 242 LQSAEGAPYLVEKQVRVSGEDLTDAQPGFDQNSRQPIVTFRFNNNGAKRFAATTQEAVGR 301 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 P A+VLD +V++APVI + I G QISGNFT++ A LA +LRAG+LP L +VEER V Sbjct: 302 PFAIVLDNQVISAPVIREPILGGSGQISGNFTVQQANDLAILLRAGALPAPLKVVEERTV 361 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G LG DSI G A L+ +FM+ +YG +G A ++ +++ L AL SLLGATL Sbjct: 362 GPSLGQDSIQAGKTAAYVAAALVTVFMLAVYGLFGAFALVALAIHITLMFALQSLLGATL 421 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAG+VL IG+AVDSN+++ ERIR+E R+ +S ++D GFS A TI D+N+T+L Sbjct: 422 TLPGIAGVVLTIGMAVDSNVVIFERIRDEAREGRSAIAAIDKGFSFALGTILDANLTSLA 481 Query: 473 ATVVLFFFGGG-AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+LF GG VRGFA+T L +L ++FTA ++ R M+ +++++ + I Sbjct: 482 TAVILFLLGGSGPVRGFAVTYILGLLTTVFTAYTLTRLMIALWVKWRRPAKLPI 535 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 81/177 (45%), Gaps = 6/177 (3%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I+ G ++A + +++ + F A+ L + IT +L G Sbjct: 362 GPSLGQDSIQAGKTAAYVAAALVTVFMLAVYGL-FGAFALVALAIHITLMFALQSLLGAT 420 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A V+ IG +V+ VV+++R+R + S IDK + LG + ++ Sbjct: 421 LTLPGIAGVVLTIGMAVDSNVVIFERIRDEARE---GRSAIAAIDKGFSFALGTILDANL 477 Query: 778 AAFISVLPMAVWGG-SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + + + GG + FA+ G++ ++ + +++ ++ + A++ Sbjct: 478 TSLATAVILFLLGGSGPVRGFAVTYILGLLTTVFTA-YTLTRLMIALWVKWRRPAKL 533 >gi|313906023|ref|ZP_07839376.1| protein-export membrane protein SecD [Eubacterium cellulosolvens 6] gi|313469136|gb|EFR64485.1| protein-export membrane protein SecD [Eubacterium cellulosolvens 6] Length = 766 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 194/714 (27%), Positives = 344/714 (48%), Gaps = 41/714 (5%) Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187 KN+ + + ++ ++ ++QR+ Q E+ + + G + Sbjct: 33 TGAMKNIRTGLDLSGGVSITYEATESAPSQKDMDDTIYKLQQRVTQYST-EANVYQQGLN 91 Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247 RI +++PG D + + + LG + F E K Sbjct: 92 RINVEIPGVSDANEILEALGKPGSLVFTDA--------------------------EGKT 125 Query: 248 EISGIHLNGATA---NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304 + G + A + + +V++ + GA++F E T N+GK +A+V DG+ ++ Sbjct: 126 VLEGSDIADAQGVSGTDQQQQRQYLVELVMTKEGAKKFQEATAANVGKQIAIVYDGKTVS 185 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 AP + I GKAQI G ++E A LA+ +R GSL ++L V VGA LG D++ Sbjct: 186 APTVKSEISGGKAQIDGMSSLEEAQQLASFIRIGSLKLELKEVYSNVVGASLGQDALSGS 245 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 A + G+ ++VLFMIV + G A +++ L +L LA ++ TLTLP IAG++L I Sbjct: 246 VLAGLIGVAIVVLFMIVFFRISGFAAGWALVLFTLLDLAFMNAFDITLTLPGIAGVILTI 305 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+++ R+REE +V SL GF +A+S IFD IT LIA VL+ G G+ Sbjct: 306 GMAVDANVIIYTRVREEIAAGTTVNRSLRAGFHKAFSAIFDGQITTLIAAAVLYVLGTGS 365 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544 ++GFA T+ + +SMFTA+++ R + + +I Sbjct: 366 IQGFATTLAIGTGLSMFTALAVSRWISYALYGAGFRSPALYGKTEHKRIIDFVGKRAIPF 425 Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 + +S+ I GLNY +DF GG V + L+ + + ++ + Sbjct: 426 IIAVLLVLSVPVGIGINRANINKGLNYSLDFIGGTATNVDFGEDLSLADLDAKVKPVVQK 485 Query: 605 ---DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661 + Q + V ++ + D + + E + K+ ++ E + I Sbjct: 486 VTGNKDIQFQKIKGGTSVIIKTRELDLAKRDELNEALAKEFKKVDVS--KIQAENISSTI 543 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNL 720 S E+ R I+ VII+ +AML YI++RF+ FA A+ L+ DI+ L ++ Sbjct: 544 SGEMRRNAIIAVIIAVLAMLFYIFVRFRDIRFATSAVIALVHDISIVLCYYVWTRASVGS 603 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 T +A +LT++GYS+N +V++DR+R+N+ S+R +++ S+ +TL RS+Y+++ Sbjct: 604 TFIAVMLTILGYSINATIVIFDRVRENLSTMQ-GESYRSIVNASVTQTLTRSLYSNLTTL 662 Query: 781 ISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 I++L + + G S + F++P+ G+V SS+F+ P+ + K Sbjct: 663 ITILSLFIMASVRGISSVAEFSLPIIVGLVAGCFSSVFVTGPLWFIMKTRNGKK 716 Score = 56.6 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 4/121 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 I GLDL GG + E E + +L+ + + +Q N+I + Sbjct: 37 KNIRTGLDLSGGVSITYEATESAPSQKDMDDTIYKLQQRVTQYSTEANVYQQGLNRINVE 96 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 I + + V D + ++ ++ + +S + Q + +E Sbjct: 97 IPGVSDANEILEALGKPGSLVF----TDAEGKTVLEGSDIADAQGVSGTDQQQQRQYLVE 152 Query: 162 Q 162 Sbjct: 153 L 153 >gi|225568132|ref|ZP_03777157.1| hypothetical protein CLOHYLEM_04205 [Clostridium hylemonae DSM 15053] gi|225163085|gb|EEG75704.1| hypothetical protein CLOHYLEM_04205 [Clostridium hylemonae DSM 15053] Length = 723 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 171/696 (24%), Positives = 309/696 (44%), Gaps = 42/696 (6%) Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 + + + + +S + D+ + + E DP LG Sbjct: 58 TPPASELEAARNVMESRLDAKNITDREVTVDKKEGHIIVRFPWKSDEKEFDPESAISELG 117 Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 TAK++F K+ I G ++ + + +T Sbjct: 118 ETAKLTFRDPD--------------------------GKILIEGQNVKNSQPVKNTETGG 151 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V +SFD G + F E T G+ L + +D R+++APV+ Q I G+A I+G +I+ Sbjct: 152 YEVQLSFDGKGTKEFAEATGALTGRQLQIYMDDRLISAPVVQQQITGGEAVINGMDSIDA 211 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A L+ + AG+LP + + LG++++ A VLI +FMIV Y G Sbjct: 212 ARALSEKINAGALPFSMETTNYNTISPALGNNALRAMVTAAAVAFVLICIFMIVSYRLPG 271 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 +++ ++ + L + LSL TLTLP IAG++L G+AVD+NI+++ERI+EE R+ Sbjct: 272 VISCLTLIFQMSLQILALSLPQYTLTLPGIAGLILSAGMAVDANIIISERIQEELRRGTG 331 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 V ++ G+ A+S++ D N+T ++L FG G + F T+ ++I++ + + Sbjct: 332 VRLAVKNGYKNAFSSVLDGNVTTAAVALILMIFGSGTMLSFGYTLFTGVIINLLAGVWMS 391 Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 R M+ +RY+ + F + + F R + + + + + Sbjct: 392 RFMLTSAVRYQV-----CSREQMFRRKKEQRPLHFAAGRRKIYVFTAVVLLTGAAVSGAN 446 Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFLVRLQYQP 625 G+ F GG L D + +E L +S Q + + L Sbjct: 447 GIRLDTQFTGGAILRYTYTGEADTKQAGAAVEKLVKRPVSTQITEDPLTGQKKLILTLAG 506 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 ++ ++++ + T+ T +V P I + ++ V +S++ +++YIW Sbjct: 507 NKGISPDEQKKVLEALGQDKEAAYTLSETSVVEPYIGAKALKNSAAAVGLSSLFIVLYIW 566 Query: 686 IRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 IRF + A+ L+ D L F + I N VA LT+IGYS+ND +V+Y Sbjct: 567 IRFSALSGLSAGITAVIALLHDAAIVLFVFGIGKIPVNDAFVAVTLTIIGYSINDTIVLY 626 Query: 742 DRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGS 796 DR+R+N+ + L+D+SI ET+GRSV T+ + + V+ I Sbjct: 627 DRIRENLARGGRKKEGLCRLVDRSITETIGRSVKTAFTTALCAAVVLVFACVYDIGSIKV 686 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 FA+P+ G++ SS+ IA P+ + ++R + + Sbjct: 687 FALPLLAGVISGCYSSVCIAGPLWVTWKEFRERRTK 722 Score = 53.5 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 69/254 (27%), Gaps = 28/254 (11%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+N + L I +L A + G+D+RGG V E Sbjct: 1 MKNKKNHIWLALFIIAAFVLFAFFGCGNDLKG--------VRDMRFGIDIRGGVEAVFEP 52 Query: 61 DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI--QNKITLSFAD-----SRFKENI 111 + L+ + + S L + I + + I + F E+ Sbjct: 53 AGVKETPPASELEAARNVMESRLDAKNITDREVTVDKKEGHIIVRFPWKSDEKEFDPESA 112 Query: 112 ADKVTLFLQGVNSKLN-------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164 ++ + + + K + V TE V + A Sbjct: 113 ISELGETAKLTFRDPDGKILIEGQNVKNSQPVKNTETGGYEVQLSFDGKGTKEFAEATGA 172 Query: 165 EIIRQRI----DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 RQ D++ + Q++ +I D +R + F N Sbjct: 173 LTGRQLQIYMDDRLISAPVVQQQITGGEAVINGMDSIDAARALSEKINAGALPFSMETTN 232 Query: 221 NSKKGFMFGVRFLR 234 + G LR Sbjct: 233 YNTISPALGNNALR 246 >gi|154248229|ref|YP_001419187.1| preprotein translocase subunit SecD [Xanthobacter autotrophicus Py2] gi|154162314|gb|ABS69530.1| protein-export membrane protein SecD [Xanthobacter autotrophicus Py2] Length = 535 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 214/534 (40%), Positives = 325/534 (60%), Gaps = 9/534 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + + +GLL ALPN LPQS L PS + +R++LGLDL+GGSH++LEV Sbjct: 2 LHFSRLKTTAILLTIAVGLLFALPNVLPQSALAHLPSWLASSRVTLGLDLQGGSHILLEV 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + DE+R L+ + IG ++ ++L D + ++ Sbjct: 62 DGSALRKERTEQVRDEIRRVLRDQKIGYSNLAVRDTSVSLRLRDPADTQKAVAELRKLAV 121 Query: 121 GVNSKLNVDPK---KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 V + L + L+ ++++ +++ LS+ ++ + A+EQS+EIIR+RIDQ+G Sbjct: 122 PVTNALFGNSSGELDLLVSSSSDGAVTVQLSEAGLNARMRSAVEQSIEIIRRRIDQLGTV 181 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF----- 232 E IQR G RIL+Q+PG QDP RL+ LLG TAK+SF V + S + + G Sbjct: 182 EPNIQRQGLDRILVQVPGLQDPQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRPPPDSEV 241 Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 L+ DG YLVE +V +SG L A FD + +P+V F+ GARRF T+D +G+ Sbjct: 242 LQGQDGQPYLVEKQVRVSGEDLVDAQPGFDHNSREPIVSFRFNNNGARRFAATTQDAVGR 301 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 P A+VLD +V++APVI + I G QISG+FT++ A LA +LRAG+LP L +VEER V Sbjct: 302 PFAIVLDNQVISAPVIREPILGGSGQISGSFTVQQANDLAILLRAGALPAPLKVVEERTV 361 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G LG+DSI+ G A L+ +FMI +YG +GL A ++ ++++L +L S+LGATL Sbjct: 362 GPSLGADSIHAGKVAAYVATALVAVFMIAVYGLFGLFALVALAVHIMLMFSLQSILGATL 421 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 T+P IAG+VL IG+AVDSN+++ ER+R+E R+ +S ++D GF A TI D+N+T+L Sbjct: 422 TMPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTILDANVTSLA 481 Query: 473 ATVVLFFFGGG-AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+LF GG VRGFA+T L +L +MFTA ++ R M+ + +++++ + I Sbjct: 482 TAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMIAYWVKWRRPAKLPI 535 Score = 121 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 77/177 (43%), Gaps = 6/177 (3%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I G V ++ + +++ + F L A+ L + I ++ G Sbjct: 362 GPSLGADSIHAGKVAAYVATALVAVFMIAVYGL-FGLFALVALAVHIMLMFSLQSILGAT 420 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + +A V+ IG +V+ VV+++RMR + S IDK LG + ++ Sbjct: 421 LTMPGIAGVVLTIGMAVDSNVVIFERMRDEARE---GRSAISAIDKGFVNALGTILDANV 477 Query: 778 AAFISVLPMAVWGG-SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + + + + GG + FA+ G++ ++ + +++ + + A++ Sbjct: 478 TSLATAVILFLMGGSGPVRGFAVTYILGLLTTMFTA-YTLTRLMIAYWVKWRRPAKL 533 >gi|325265271|ref|ZP_08131996.1| protein-export membrane protein SecD [Clostridium sp. D5] gi|324029450|gb|EGB90740.1| protein-export membrane protein SecD [Clostridium sp. D5] Length = 718 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 166/694 (23%), Positives = 315/694 (45%), Gaps = 49/694 (7%) Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ------DPSRLRQL 205 + + ++ + +I R+D I + + H +I + +P Sbjct: 56 TETPSAQDLDAARTVIENRLDAQNILDREVTVDKEHGNIIVRFPWKSDEKEFNPESAIAE 115 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG TAK++F V + G ++ ++ + +T Sbjct: 116 LGETAKLTFRDAD--------------------------GNVLVEGKNVADSSVVKNQQT 149 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + V + FD+ GA F + T +G+ + + +D ++ P++ +AI G+A I+G + Sbjct: 150 GEYEVSLQFDKTGAEDFADATEKLVGQSMGIYMDEERISNPMVKEAIKGGEAVINGMSSQ 209 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A L+ + AG+LP L + LGS ++ T A +L+ LFMI+ Y Sbjct: 210 EEADSLSEKINAGALPFSLKTTNYNTISPTLGSGALKAMTTAAAVAFILVCLFMILYYRL 269 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G +A ++ + L + +LS+ TLTLP IAG++L +G+AVD+N++++ERI EE +K Sbjct: 270 PGTIACLALIFQMSLQVLVLSVPQYTLTLPGIAGLILSLGMAVDANVIISERIGEELQKG 329 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 S+ ++ G+ A+S++ D N+T V+L FFG G + F T+ +LI++ + Sbjct: 330 TSIRSAVRRGYKNAFSSVLDGNVTTAAVAVILMFFGSGTMLSFGYTLLTGVLINLVAGVW 389 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + R M+ +I Y + + + + + + I F+ R ++ + + Sbjct: 390 LSRVMLSSVILYPGFQKLKLFRVKKERKV-----IDFLGKRRAIFIFTVAVLVTGSIISA 444 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ---NFDGEKNFLVRLQ 622 G+ F GG+ L D ++E++ +S Q +F + LV Sbjct: 445 VRGVTLDTQFTGGVILKYTCEGTPDTEKAAKDIENILNRPVSAQAGEDFVSGQEKLVLNL 504 Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 Q + + + + + T V P I ++ ++ ++++A+ +++ Sbjct: 505 GGNQGISPQEQEKVLKELQSMQPELNYQSSETYAVEPYIGARALKNSVIAIVLAALFIVV 564 Query: 683 YIWIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 YI +RF + + + L+ D+ F + I N V+ LT+IGYS+ND + Sbjct: 565 YIRLRFSALSGFSAGVSGVIALLHDVFIVFLVFGVCKIPLNDAFVSVTLTIIGYSINDTI 624 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVI 794 V+YDR+R++M +T L+++SI ETLGRS+ T+ + V + V+ I Sbjct: 625 VLYDRIREHMSGHTK-EGLVPLVNRSITETLGRSINTAFTTVLCVAIVLVFAVIYNIESI 683 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 FA+PM G++ SSI +A I + + Sbjct: 684 KIFALPMLIGMISGCYSSICVAGAIWVTWKGRKK 717 Score = 56.6 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 17/175 (9%), Positives = 44/175 (25%), Gaps = 20/175 (11%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + N W+V+ + + L + + G+D+RGG V E + Sbjct: 5 KRNIWIVLCVIAVFLYTAIFGLGS-----------EIKGAMDMRFGIDIRGGVEAVFEPE 53 Query: 62 --EDDFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRF-----KENIA 112 + L + + L + I ++ + I + F E+ Sbjct: 54 GVTETPSAQDLDAARTVIENRLDAQNILDREVTVDKEHGNIIVRFPWKSDEKEFNPESAI 113 Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 ++ + + + + + + Sbjct: 114 AELGETAKLTFRDADGNVLVEGKNVADSSVVKNQQTGEYEVSLQFDKTGAEDFAD 168 >gi|218509532|ref|ZP_03507410.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium etli Brasil 5] Length = 592 Score = 273 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 237/588 (40%), Positives = 347/588 (59%), Gaps = 8/588 (1%) Query: 225 GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284 V + D YLV+ S ++ D +T + D G +R E Sbjct: 12 PATSQVLYSLDDPPVPYLVDRTAFASAGNMVDIQPVVDAQTQDTSIAYRLDAEGTKRLAE 71 Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344 VT NIGK LA+V D +V++APVI+ AI +G+ +IS NF+ + LA MLRAG+LP L Sbjct: 72 VTGQNIGKHLAIVFDDQVMSAPVIDVAITNGEGRISANFSEDGVRDLAVMLRAGALPATL 131 Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404 VEER+V G +SI G A + +VL+ MI LY G++A S+F N+IL +A Sbjct: 132 TSVEERSVSPTFGGESIVSGFVAGLVAVVLVAALMIALYRILGVIAVVSLFFNLILIIAA 191 Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464 LSL GATLTLP IAGIVL +G+AVDSN+LV ERIREE + S ++ GFSRA++TI Sbjct: 192 LSLAGATLTLPGIAGIVLIVGMAVDSNVLVYERIREEEKTAHSFAEAVGRGFSRAFATIV 251 Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 D+N+T IA V+LFF G A+RGFA+T+ + IL ++FTA ++ R+++ + ++ + + Sbjct: 252 DANVTIFIAAVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRRPRHLP 311 Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + L+ + + I+FM R + S S+ ++ T GL GIDF GG + V Sbjct: 312 KSVLTH---LFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLIEVT 368 Query: 585 ANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A + D++ +RS L L +G++ + G N +R+ Q G A+ +V+ ++ Sbjct: 369 AKQGNADIADLRSRLNDLNLGEVGVERTGGPANARIRIASQGGGENAEQSAATLVRGELE 428 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + E+VGP IS EL + + + A+L+YIWIRF+W FA+GAI + D Sbjct: 429 A---DYDFRRVEVVGPAISGELTMMATLVIAPALAAILLYIWIRFEWQFAVGAIIATLHD 485 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + LG F L GIEFNLT++AAVLT++GYS+ND VVVYDRMR N+K YT + LID Sbjct: 486 VIIMLGLFVLTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRVNLKRYTK-MPLPILIDA 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811 SIN+TL R+V T+ +++L + ++GG V+ SFA M FG+ + S Sbjct: 545 SINQTLSRTVLTAATTLLALLALYLFGGDVMRSFAFAMLFGVALGTFS 592 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 77/175 (44%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 V P E I G V +++ + + + ++ + A+ +L ++ + +L G Sbjct: 138 SVSPTFGGESIVSGFVAGLVAVVLVAALMIALYRIL-GVIAVVSLFFNLILIIAALSLAG 196 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ ++G +V+ V+VY+R+R+ T+ SF + + + + V Sbjct: 197 ATLTLPGIAGIVLIVGMAVDSNVLVYERIREE---EKTAHSFAEAVGRGFSRAFATIVDA 253 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + G I FA+ +A GI+ ++ + I+ R Sbjct: 254 NVTIFIAAVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRRPR 308 >gi|257790739|ref|YP_003181345.1| protein-export membrane protein SecD [Eggerthella lenta DSM 2243] gi|257474636|gb|ACV54956.1| protein-export membrane protein SecD [Eggerthella lenta DSM 2243] Length = 900 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 172/787 (21%), Positives = 322/787 (40%), Gaps = 83/787 (10%) Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186 + L + + + V + +E+S II R++ +G SE+ +Q G+ Sbjct: 40 PQEKINQGLDIQGGLSVVLTAKSTDGQAVSNDDMEKSRAIIESRVNALGASEAVVQVQGT 99 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246 +IL+Q+PG + +G T K+ F ++ + +G Sbjct: 100 DQILVQIPGLTNTEDALNTIGKTGKLEFARLDSFTDEDVKTKIENGQASGEGTVSDDLGV 159 Query: 247 VEI-SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN---------------- 289 + +G + + +I+ ++G R Sbjct: 160 ATLPTGETQHLKVEDGTYTPIVTGSNITKVDIGKRSDTSTDYAVNISLDSAGAAAFAEAS 219 Query: 290 -----IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344 + ++LD V +AP IP G QI+GN++++ A L +L +GSLP+ Sbjct: 220 KDLAPTKGKIVIILDNEVQSAPATQSEIPDGNIQITGNYSLDEAKALQTVLESGSLPVSF 279 Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404 + + VG LG D++ G + GL +++L+++ Y G + ++ + +L L + Sbjct: 280 EYAQSQTVGPTLGQDALASGVLVALIGLAVVMLYLLFFYRGLGAITAAAMIVFAVLYLGI 339 Query: 405 LSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460 L+ L +L+L IAGIVL IG+A DS+IL ER REE R +SV + G A Sbjct: 340 LATLSSFGLFSLSLAGIAGIVLTIGMAADSSILTMERFREEIRMGRSVRAASVTGVKHAI 399 Query: 461 STIFDSNITALIATVVLFF--------FGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 T D+++ L++ + LFF FG G + + +L + ++ Sbjct: 400 VTSVDADLVTLVSALSLFFLASASVKGFGLTLALGIVCDIAMMLLFKAPLIRVLAPKVIA 459 Query: 513 FIIRYKKMKS----------------------------------------------IDIN 526 + +K Sbjct: 460 RHPGFWGIKDSLAASKDYAALAAAEGTSVAAAEAGETINPTESEEAAERREGAAGEAAAK 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + I F+ R +G++ + S+ ++ GLN+GI+F GG + Sbjct: 520 AARKPRGKFIKHDINFLGYRRVFLGVAAVLVCVSLAIVGVKGLNFGIEFVGGTSVSFHGT 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V +R+ + D Q + + + ++ + T+ V + Sbjct: 580 GDVTTEQMRTAFDQAGEPDAVVQTTNADGDEGYLVRTTTTSAEEATQRANQVADSL---G 636 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 + +GP +I+ ++ ++S + ++IYI IRF++ + AI L+ D+ Sbjct: 637 LSTDSFEVTTIGPDWGASVIQSSLIAFLVSIVLIIIYIAIRFEYKMGVTAIVALLHDLVL 696 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 +G +AL G E N +AA+LT++GYS+ D VVV+ R+ NM+ +F + + SIN Sbjct: 697 VMGVYALVGREVNPNTIAALLTILGYSLYDTVVVFHRINDNMQSDDIKCTFMTMANHSIN 756 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + L R++ T++ + I VL M ++GG + FA M G+V + SSI +A+P+ Sbjct: 757 QVLVRTINTTLTSLIPVLAMLLFGGETLKDFAFAMVIGLVCGSYSSIAVASPLYAMWKTR 816 Query: 827 RAKNARI 833 + ++ Sbjct: 817 EPRYQKL 823 >gi|223986334|ref|ZP_03636343.1| hypothetical protein HOLDEFILI_03653 [Holdemania filiformis DSM 12042] gi|223961683|gb|EEF66186.1| hypothetical protein HOLDEFILI_03653 [Holdemania filiformis DSM 12042] Length = 764 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 180/690 (26%), Positives = 331/690 (47%), Gaps = 39/690 (5%) Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218 A+ E + +RI+ +G+SE I G+ RI +QL G +D R+++ +TA ++F V Sbjct: 62 AMSAVAESVSKRINVLGVSEPQILIEGNDRIRVQLAGVKDQEEARRVISSTANLTFRDVN 121 Query: 219 PNNSKKGFMF--GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 N + G L +G + + + + + ++ E Sbjct: 122 DNLLSDASIIKEGGASLGYENGAPVVSLKIADQAKFAEITQKVSEMGTGNNIMIVWLDYE 181 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 G E G + ++ SG ISG FT A LA ++ Sbjct: 182 DGDSYVKEAAVAQAGGEAK-------YISAAQVKSAISGDCVISGGFTESEARELAELIN 234 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 +GSLP+K+ + V AD G + K A + G+ L+++FM+V+Y G++AD + L Sbjct: 235 SGSLPVKMTEIYSNVVSADYGIGAFNKTATAGIVGVALVMIFMLVVYRFAGVIADVMLAL 294 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 + A+ +G TLP IA +VLG+G+ VD+NI+ ERI++E +SV ++ G Sbjct: 295 YIFAVFAIYGGMGGVFTLPGIAALVLGVGMTVDANIITFERIKDELYAGRSVQNAVKEGQ 354 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 S +++TIFD+ T L+A ++++ FG GAV+GFA + +++ +M + + R ++ I++ Sbjct: 355 STSFATIFDAQFTTLLAALIMYIFGTGAVKGFATMLMVTVFCTMVLNVYVSRFLVNQIVK 414 Query: 517 YKKMKSIDINP------------LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564 + + F + F+ + + S++ ++ ++ Sbjct: 415 SGALDNKKTWFGVKQSNIPDVAKRQEQFYFGPFKKVDFVGKAKYFITTSLIILAAAVVMI 474 Query: 565 FTHGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618 +G N GIDF G ++ V +N ++ + VRS+ E+L Q + ++ Sbjct: 475 CVNGFGGKGALNLGIDFSSGTKITVTSNETLNTNEVRSDFEALGYKPSRVQASGDKVVYV 534 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 Q D + + K I +V P + REL++ I +++ + Sbjct: 535 TLNQALEQDQLTSIKETLTAKYGIEPND--------NVVTPVVGRELVKNAIALSLLAWV 586 Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 AMLIYI IRFKW +A+ I L+ D+ L FA+F +E N+ ++ +L +IGYS+N+ + Sbjct: 587 AMLIYITIRFKWDYAVSCIVALVHDVAIVLAIFAIFRMEINIELISVILAIIGYSINNSI 646 Query: 739 VVYDRMRKNMKLYTT----SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 VV+DR+R+++ + +R +++ S+++TL RSV++S+ + ++ + + G I Sbjct: 647 VVFDRVRESIAESRKPKLTNADYRLIVNDSLDKTLVRSVFSSITTLLPIIALLLMGSGAI 706 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +F M G++ SSIFIA + I Sbjct: 707 VTFNFAMFVGLIAGTFSSIFIAPQMWYTIR 736 Score = 61.2 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 35/410 (8%), Positives = 109/410 (26%), Gaps = 19/410 (4%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + V + +++ ++ + ++ LGLDL+GG +V ++ Sbjct: 6 RTSRLTVFVVTVVAIFAMIGIFAQDVAKNTT-------------LGLDLQGGFEIVYQIS 52 Query: 62 EDDFVNGF--LQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLF 118 + ++ + + G+ + + ++I + A + +E ++ Sbjct: 53 PLQEGKDLPAMSAVAESVSKRINVLGVSEPQILIEGNDRIRVQLAGVKDQEEARRVISST 112 Query: 119 LQGVNSKLNVD-PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +N + ++ + + I+ + + + G + Sbjct: 113 ANLTFRDVNDNLLSDASIIKEGGASLGYENGAPVVSLKIADQAKFAEITQKVSEMGTGNN 172 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + A++ GF Sbjct: 173 IMIVWLDYEDGDSYVKEAAVAQAGGEAKYISAAQVKSAISGDCVISGGFTESEARELAEL 232 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 N + V+++ I+ N +A++ + F + +A V Sbjct: 233 INSGSL--PVKMTEIYSNVVSADYGIGAFNKTATAGIVGVALVMIFMLVVYRFAGVIADV 290 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + A G + G + + + + + + Sbjct: 291 MLALYIFAVFAIYGGMGGVFTLPGIAALVLGVGMTVDANIITFERIKDELYAGRSVQNAV 350 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 + I +L +++Y + ++ + L Sbjct: 351 KEGQSTSFATIFDAQFTTLLAALIMYIFGTGAVKGFATMLMVTVFCTMVL 400 >gi|154253476|ref|YP_001414300.1| preprotein translocase subunit SecD [Parvibaculum lavamentivorans DS-1] gi|154157426|gb|ABS64643.1| protein-export membrane protein SecD [Parvibaculum lavamentivorans DS-1] Length = 535 Score = 271 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 216/528 (40%), Positives = 327/528 (61%), Gaps = 9/528 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W V L ++C GL + PNF+P++ L P +P +I+LGLDLRGGS+L+L VD Sbjct: 6 RWKVALILLVCFAGLAYSAPNFIPKASLQGVPEWLPHQQINLGLDLRGGSYLLLAVDTAS 65 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 V Q +++R+ L+ E I + +++ + E + + V+ Sbjct: 66 IVRDRQQSLVNDVRNALRSERIPYTGLGLQGEGVSVRITNPEDVEKAREAIEGLSTIVSG 125 Query: 125 KLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + +L + TTE++I++ L++ A++QS+EI+R+RID++G +E IQ+ Sbjct: 126 NAFSTLPERDLAIVTTERQITVALTEAEKIARTQSAVQQSIEIVRRRIDELGTTEPVIQQ 185 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM--------FGVRFLRD 235 G+ RIL+Q+PG DP RL++LLG TAKM+F V S + + + + D Sbjct: 186 QGTDRILVQVPGLDDPQRLKELLGQTAKMNFRLVSNAMSGQQALASRTVPSGTEILYTAD 245 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 LVE ++ + G L A FD + +PVV+ FD GAR+F EVTR+N+G+P A Sbjct: 246 EPRAPVLVERRIMVGGDRLVDAQPGFDQRNGQPVVNFRFDSSGARQFGEVTRNNVGRPFA 305 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLD +V++AP IN+ I G QISG+FT++ A LA +LRAG+LP LN++EER VG Sbjct: 306 IVLDDKVISAPRINEPIMGGSGQISGSFTVQAANDLAILLRAGALPAPLNVLEERTVGPG 365 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG+DSI G A V G V +V+FMI YG +GL+A+ ++FLNV + A LS+L ATLTLP Sbjct: 366 LGADSIRAGEIAAVIGSVAVVVFMIASYGFFGLLANIALFLNVAMIFAALSILQATLTLP 425 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL IG+AVD+N+L+ ERIREE + +++ G++RA S+I D+NIT LI+ Sbjct: 426 GIAGIVLTIGMAVDANVLIYERIREEIAAGKGPIPAIEAGYNRALSSILDANITTLISAA 485 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 +LF G G VRGFA+T+G+ I+ S+FTA ++ R M+ +R ++ K++ Sbjct: 486 ILFQMGSGPVRGFAVTLGIGIITSVFTAFTVNRLMVSVWLRRRRPKTL 533 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 76/175 (43%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + + IR G + +I ++A+++++ + + F L A L L++ ++ Sbjct: 361 TVGPGLGADSIRAGEIAAVIGSVAVVVFMIASYGF-FGLLANIALFLNVAMIFAALSILQ 419 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++Y+R+R+ + I+ N L + Sbjct: 420 ATLTLPGIAGIVLTIGMAVDANVLIYERIREEIAA---GKGPIPAIEAGYNRALSSILDA 476 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ IS + G + FA+ + GI+ + ++ + ++ R Sbjct: 477 NITTLISAAILFQMGSGPVRGFAVTLGIGIITSVFTAFTVNRLMVSVWLRRRRPK 531 >gi|284032592|ref|YP_003382523.1| protein-export membrane protein SecD [Kribbella flavida DSM 17836] gi|283811885|gb|ADB33724.1| protein-export membrane protein SecD [Kribbella flavida DSM 17836] Length = 765 Score = 270 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 203/712 (28%), Positives = 353/712 (49%), Gaps = 33/712 (4%) Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +I + S + + ++ ++++E++R+RID +G++E ++ R G RI+++LPG QDP Sbjct: 37 GTQIVLETSDSPTVKADQNSTDKALEVLRRRIDALGVTEPSVTRQGERRIIVELPGVQDP 96 Query: 200 SRLRQLLGTTAKMSFHKV-LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL--NG 256 +++G TA++SFH+V +K SD L K ++G + Sbjct: 97 REAAEVIGKTAQLSFHEVLDQVAAKPAKPAAGDLYLPSDDGGVLKLGKPAMTGDMVGGAE 156 Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----------------G 300 A + +V ++F + G + + ++T +P+ Sbjct: 157 AVLDTQQMAQGWIVQLNFKDDGGKIWSQITGKAACQPVGAPQRSVAIVLDNEVLTAPQVD 216 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + N +P + I+GNFT E A L+A++ G+LP+ ++I+++R VG LG D+ Sbjct: 217 PTGGSTLCNVGLPGSNSTITGNFTEEQAKDLSALISGGALPLPVDIIDQRTVGPSLGKDA 276 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I A V G+ L LF++++Y GL+A + ++ A L+++GATLTLP +AG Sbjct: 277 IQASAWAGVIGVALTALFIVLVYRLVGLMAVIGLLAYAGMSYAALTVIGATLTLPGLAGF 336 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSV--FCSLDMGFSRAYSTIFDSNITALIATVVLF 478 VL IG+AVD+N+LV ER RE+ ++ SL GF A S I DSNIT L+A +LF Sbjct: 337 VLAIGMAVDANVLVFERAREDYIAGRTDGLRRSLRSGFGNALSAIADSNITTLLAAGLLF 396 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFLI 534 F G VRGF +T+ + ++ SM +A+ + R F + K + + I R Sbjct: 397 FLAAGPVRGFGVTLSVGVIASMLSALVVTRVFAEFFVSRKFVLNRPSISGIAGHGRVRTW 456 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 + M+ + I++ + S+ + GLN GI+F GG + V +PV Sbjct: 457 LEAKQPALMKHSRRWLLITLAAIVISVAGVAIRGLNLGIEFTGGRLIEVSTTQPVSPDQA 516 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R+ + + Q + E +++ I I S + Sbjct: 517 RAAVAEAGYPNAVVQASGTDD-------ITVRTGTISNDEAEKIRESIGRIGGGSEVIRN 569 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 E +GP + EL K ++ + ++ +A L Y+ IRF+W F GA+ L+ ++ +G FA Sbjct: 570 ESIGPSLGNELRNKALIALGVALLAQLAYLAIRFRWTFGAGAVLALLQNVAVVVGVFAWT 629 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +AA+LT+IGY+VND VVV+DR+R+ + ++ + +ID +I L R++ Sbjct: 630 GKPVDGIFLAAMLTIIGYTVNDSVVVFDRIRE-TRNARSTENLGPVIDTAIVNVLPRTIN 688 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 T ++ + + GG + FA+ + GIVV SS AAP+L+ + Sbjct: 689 TGISTLFILAALLFLGGDSLADFALALLLGIVVGTYSSNLTAAPLLVELEKR 740 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 68/175 (38%), Gaps = 2/175 (1%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + VGP + ++ I+ +I ++I + ++ L A+ L+ + Sbjct: 264 DQRTVGPSLGKDAIQASAWAGVIGVALTALFIVLVYRLV-GLMAVIGLLAYAGMSYAALT 322 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 + G L +A + IG +V+ V+V++R R++ T R + L Sbjct: 323 VIGATLTLPGLAGFVLAIGMAVDANVLVFERAREDYIAGRT-DGLRRSLRSGFGNALSAI 381 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 +++ ++ + + F + ++ G++ + S++ + F + Sbjct: 382 ADSNITTLLAAGLLFFLAAGPVRGFGVTLSVGVIASMLSALVVTRVFAEFFVSRK 436 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 31/265 (11%), Positives = 73/265 (27%), Gaps = 30/265 (11%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + + L++ + + P+ LGLDLRGG+ +VLE Sbjct: 1 MNRSSLVRALFAFLVLAASTYVVLTARPE----------------LGLDLRGGTQIVLET 44 Query: 61 D---EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116 + LR + G+ S+ + +I + + A+ + Sbjct: 45 SDSPTVKADQNSTDKALEVLRRRIDALGVTEPSVTRQGERRIIVELPGVQDPREAAEVIG 104 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIV----LSQNNIDQVISHAIEQSMEIIRQRID 172 Q ++ + + + + + ++ + Sbjct: 105 KTAQLSFHEVLDQVAAKPAKPAAGDLYLPSDDGGVLKLGKPAMTGDMVGGAEAVLDTQQM 164 Query: 173 QIGISESTIQRLGSHRILIQL------PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226 G + +I Q+ P R ++ ++ +V P Sbjct: 165 AQGWIVQLNFKDDGGKIWSQITGKAACQPVGAPQRSVAIVLDNEVLTAPQVDPTGGSTLC 224 Query: 227 MFGVRFLRDSDGNQYLVEDKVEISG 251 G+ + + E ++S Sbjct: 225 NVGLPGSNSTITGNFTEEQAKDLSA 249 >gi|192291546|ref|YP_001992151.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris TIE-1] gi|192285295|gb|ACF01676.1| protein-export membrane protein SecD [Rhodopseudomonas palustris TIE-1] Length = 533 Score = 270 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 201/530 (37%), Positives = 311/530 (58%), Gaps = 9/530 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W + + L A+PNF P+S + +P + + LGLDL+GGSH++LEVD + Sbjct: 5 SRWKALAIILTALAVCLCAVPNFFPESTVKSWPKWA-QRHLVLGLDLQGGSHILLEVDAN 63 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 L D+ R L++ I + + + + + K+ Q + Sbjct: 64 SVKKDKLDSVRDDARRVLREARIAYTGLATKGDSVEVRISKDTDVPAALAKLRELSQPLG 123 Query: 124 SKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 L + +++L + I + + Q I + +++QS++I+ +R++++G E IQ Sbjct: 124 GLLGSNGQRSLEVSDAGGGLIRLTVPQAAIADRVRQSVDQSIQIVERRVNELGTVEPLIQ 183 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRD 235 R G+ RIL+Q+PG QDP+RL++LLG TAK+ F V + S M G Sbjct: 184 RQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSGDQAMGGNVPPDSELLMSAS 243 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 S Y+++ +V +SG L A FD +T +P+V F+ GAR+F T +N+G P A Sbjct: 244 SPKQPYVIKKQVLVSGADLTDAQPGFDQRTGEPIVSFRFNTNGARKFARATTENVGLPFA 303 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLD V++APVI + I G QISG+FT++ A LA +LRAG+LP L I+EER VG Sbjct: 304 IVLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPG 363 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG DSI KG A G +L+++FM++ Y +G+ A+ ++ +NV + +LSLL ATLTLP Sbjct: 364 LGQDSIEKGERAAYVGSILVIVFMLLTYRLFGVFANLAVAVNVAMIFGVLSLLNATLTLP 423 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL +G+AVDSN+L+ ERIREE R ++ ++D GF RA +TI DSNIT IA Sbjct: 424 GIAGIVLTVGIAVDSNVLIYERIREEIRAGRNAISAIDAGFKRALATILDSNITTFIAAA 483 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 VLF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++ +R+K+ + I Sbjct: 484 VLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVATWVRWKRPHHVPI 533 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 101/263 (38%), Gaps = 10/263 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 G + N R+ E++ + + + ++R G Sbjct: 271 QRTGEPIVSFRFNTNGARKFARATTENVGLPFAIVLDNEVISAPVIREPITGGSGQISGS 330 Query: 634 VLEMVKKKIT------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + TI VGP + ++ I KG + +I +++++ + Sbjct: 331 FTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGERAAYVGSILVIVFMLLT 390 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F + A + +++ G +L L +A ++ +G +V+ V++Y+R+R+ Sbjct: 391 YRL-FGVFANLAVAVNVAMIFGVLSLLNATLTLPGIAGIVLTVGIAVDSNVLIYERIREE 449 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 ++ +IS ID L + +++ FI+ + G + FA+ + GI+ Sbjct: 450 IRAGRNAIS---AIDAGFKRALATILDSNITTFIAAAVLFYIGTGPVRGFAVTLGIGIIT 506 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 ++ + I+ W+ + Sbjct: 507 TVFTAFTLTRLIVATWVRWKRPH 529 >gi|226323924|ref|ZP_03799442.1| hypothetical protein COPCOM_01701 [Coprococcus comes ATCC 27758] gi|225207473|gb|EEG89827.1| hypothetical protein COPCOM_01701 [Coprococcus comes ATCC 27758] Length = 721 Score = 270 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 195/686 (28%), Positives = 328/686 (47%), Gaps = 34/686 (4%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q + ++ ++ +++R++Q E+++ + G RI I++PG D +++ + Sbjct: 51 ITYQAKDKNPSAEDMKDTIYKLQKRVEQYST-EASVYQEGDDRINIEIPGVSDANKVLEE 109 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG + F N +G + + + K Sbjct: 110 LGKPGSLVFQDADGNTVLEGTDVKNAEAQTQENST----------------------TKN 147 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + VV + + G +F E T N+GK ++++ DG+ +++P +NQAI G+A I+G + Sbjct: 148 KEYVVALQLTKEGTTKFAEATAANVGKQISIIYDGQTISSPRVNQAIEGGEAVITGMSSY 207 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A LAA +R G L ++L + V A LG ++I A GL +I +FM +Y Sbjct: 208 EEADNLAATIRIGGLSLELEELRSNVVAAQLGEEAISTSLMAGAIGLAIIFVFMCFVYLI 267 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 GL A ++ + L L LL+ TLTLP IAGI+LGIG+AVD+N+++ R+REE Sbjct: 268 PGLAAGLALLIYTGLILVLLNAFNITLTLPGIAGIILGIGMAVDANVIIFARVREEVTTG 327 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 S+ SL GF +A S I D N+T LIA +L+F G G+V+GFA T+ L I++SMFTA+ Sbjct: 328 ISIKTSLKNGFHKALSAIVDGNVTTLIAAAILWFKGSGSVKGFAQTLALGIVVSMFTALV 387 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 I R ++ + + + I F+ + ISI + Sbjct: 388 ITRIIIFSLYAIG----LRDVKFYAKKFKKERKVIDFLGKKAIFFAISIAVIAAGFVTMG 443 Query: 566 THGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 NY ++FKGG V ++ + + S + + N +K Sbjct: 444 VQSGKGEGALNYSLEFKGGTATTVTFDKDYSIKEIDSKIVPVVEDVTGDHNVQAQKVKDS 503 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 ++ + + ++ E + +S E+ + I+ VIISAI Sbjct: 504 NQIIIKTQTLNLDEREALNNALADKFGVDTSTITAENISSTVSSEMRQDAIIAVIISAIC 563 Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 MLIYIW RFK FA A+ L+ D+ L F+AL T +A +LT++GYS+N + Sbjct: 564 MLIYIWFRFKDVRFASSAVLALLHDLLFVLTFYALARTSVGNTFIACMLTILGYSINATI 623 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 V++DR+R+ +++ + + L+++SI TL RS+YT+ F+ V + + G S I FA Sbjct: 624 VIFDRIREELRVMKRNDDLKALVNRSITYTLTRSIYTTFTTFVMVAVLYIMGVSSIKEFA 683 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIY 824 P+ GI SS+ I + + Sbjct: 684 APLMVGIAGGGYSSVCITGALWYVMK 709 Score = 105 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 79/180 (43%), Gaps = 4/180 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + +V ++ E I ++ I + +++ + L A L++ L Sbjct: 230 RSNVVAAQLGEEAISTSLMAGAIGLAIIFVFMCFVY-LIPGLAAGLALLIYTGLILVLLN 288 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F I L +A ++ IG +V+ V+++ R+R+ + TT IS + + ++ L Sbjct: 289 AFNITLTLPGIAGIILGIGMAVDANVIIFARVREEV---TTGISIKTSLKNGFHKALSAI 345 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 V ++ I+ + G + FA +A GIVV+ +++ I I+ +Y ++ + Sbjct: 346 VDGNVTTLIAAAILWFKGSGSVKGFAQTLALGIVVSMFTALVITRIIIFSLYAIGLRDVK 405 Score = 64.3 bits (154), Expect = 7e-08, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 47/155 (30%), Gaps = 1/155 (0%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 I+LGLDL GG + + + + ++ +L+ +++ ++ ++I + Sbjct: 37 RNINLGLDLAGGVSITYQAKDKNPSAEDMKDTIYKLQKRVEQYSTEASVYQEGDDRINIE 96 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 + +++ V E + ++ A++ Sbjct: 97 IPGVSDANKVLEELGKPGSLVFQDA-DGNTVLEGTDVKNAEAQTQENSTTKNKEYVVALQ 155 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196 + E + + + + I P Sbjct: 156 LTKEGTTKFAEATAANVGKQISIIYDGQTISSPRV 190 >gi|90424273|ref|YP_532643.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris BisB18] gi|90106287|gb|ABD88324.1| protein-export membrane protein SecD [Rhodopseudomonas palustris BisB18] Length = 534 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 206/530 (38%), Positives = 312/530 (58%), Gaps = 10/530 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + L A+PNF P++ + +P + + LGLDL+GGSH++LEVD + Sbjct: 6 RWKALAIILTALAVCLCAVPNFFPEATVKTWPKWA-QRHLVLGLDLQGGSHILLEVDSNS 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L D+ R L+ I + + + + + K+ Q + Sbjct: 65 VRKDKLDQVRDDTRRTLRDAKIPYTGLAVRNDAVEVRISKDSDVATALSKLRELSQPLGG 124 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + ++NL + I + ++Q I + I ++EQS++I+ +R++++G E IQR Sbjct: 125 LMGQSGQRNLEVSDAGSGLIRLAVTQAAITERIRQSVEQSIQIVERRVNELGTVEPLIQR 184 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237 G RIL+Q+PG QDP+RL++LLG TAK+ F V P G DSD Sbjct: 185 QGIDRILVQVPGLQDPTRLKELLGKTAKLDFRMVDPTVPADQVRQGGGVPPDSDLLMGAQ 244 Query: 238 --GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 Y+++ +V +SG L A FD ++ +P+V F+ GAR+F + T DN+G+P A Sbjct: 245 APKQPYVIKKQVLVSGGDLTDAQPGFDQRSGEPIVSFRFNTSGARKFAQATTDNVGQPFA 304 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLD V++APVI + I G QISG+FT++ A LA +LRAG+LP L I+EER VG Sbjct: 305 IVLDNEVISAPVIREPITGGSGQISGSFTVQQANDLAILLRAGALPAPLTIIEERTVGPG 364 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG DSI KG A G +L+++FM++ Y +G+ A+ ++ +NV + +LSLL ATLTLP Sbjct: 365 LGQDSIEKGELAAYVGSILVIVFMLLTYRLFGVFANIAVAINVAMIFGVLSLLNATLTLP 424 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL +G+AVDSN+L+ ERIREE R ++ ++D GF RA STI DSNIT IA Sbjct: 425 GIAGIVLTVGIAVDSNVLIYERIREEIRGGRTAISAIDAGFKRALSTILDSNITTFIAAA 484 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 VLF+ G G VRGFA+T+G+ IL ++FTA ++ R ++ +R+K+ S+ I Sbjct: 485 VLFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVAAWVRWKRPHSVPI 534 Score = 145 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 84/174 (48%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I KG + + +I +++++ + ++ F + A + +++ G +L Sbjct: 362 GPGLGQDSIEKGELAAYVGSILVIVFMLLTYRL-FGVFANIAVAINVAMIFGVLSLLNAT 420 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ T+IS ID L + +++ Sbjct: 421 LTLPGIAGIVLTVGIAVDSNVLIYERIREEIRGGRTAIS---AIDAGFKRALSTILDSNI 477 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 FI+ + G + FA+ + GI+ ++ + I+ W+ ++ Sbjct: 478 TTFIAAAVLFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVAAWVRWKRPHS 531 >gi|307946884|ref|ZP_07662219.1| protein-export membrane protein SecD [Roseibium sp. TrichSKD4] gi|307770548|gb|EFO29774.1| protein-export membrane protein SecD [Roseibium sp. TrichSKD4] Length = 536 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 199/531 (37%), Positives = 317/531 (59%), Gaps = 10/531 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + L ++ G+L LPNFL Q LD +P +PKN++ LGLDL+GG++L+ EVD++D Sbjct: 6 RWKIALILVVVTAGILATLPNFLSQKTLDSWPDFLPKNQMVLGLDLQGGAYLLYEVDKED 65 Query: 65 FVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 ++ L+ ++R+ L+++ IG + + D + +++ + Sbjct: 66 YIQKRLKGLVGDIRATLREQPRIGYTGLGVQGEAAQVRIRDLTKLADAEERLQDLKNPLV 125 Query: 124 SKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S L + + + + I + +D + ++QS+E+IR+R+D++G +E I Sbjct: 126 SNLFAGQPVDEFQINVSDDGLIRFTYTDEGLDNRLQSIVQQSIEVIRRRVDELGTTEPNI 185 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------- 234 QR G+ RIL++ PGE DP RL+ L+G TA+++FH V + S M + Sbjct: 186 QRQGTDRILVEAPGENDPERLKDLVGQTAQLTFHMVDTSMSGDQAMQSRPPVGTMVAFSI 245 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 D YL+E+ + G L A +FD + ++PVV+ F+ GAR+F +T+ N+G+P Sbjct: 246 DDPPIPYLLEETPLLGGEDLVDAQVSFDQRNNEPVVNFRFNTSGARKFSVITQQNVGRPF 305 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A+VLD V++APVI + I G QISG+FT+E A LA +LRAG+LP KL ++EER++G Sbjct: 306 AIVLDEEVISAPVIREPITGGSGQISGSFTVEGANDLAVLLRAGALPAKLTVIEERSIGP 365 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG DSI G A + V ++ FM++ YG++G++AD ++ N+ L L+ L ATLTL Sbjct: 366 GLGQDSIEAGEYASIIAGVAVIAFMLLAYGRFGVIADLALMANIFLIFGALTFLQATLTL 425 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL IG+AVD+N+L+ ERIREE R +S ++D G+ RA TI D+N+T LIA Sbjct: 426 PGIAGIVLTIGMAVDANVLIFERIREEARAGRSAITAIDAGYKRALGTILDANVTTLIAA 485 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+LF G G VRGFA+T+ + I ++F+A + R ++ +R + + I Sbjct: 486 VILFQLGSGPVRGFAVTLAIGIFTTVFSAFTFSRLLVALWVRTARPTKLPI 536 Score = 142 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 81/178 (45%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + ++ I G II+ +A++ ++ + + F + A L+ +I G Sbjct: 362 SIGPGLGQDSIEAGEYASIIAGVAVIAFMLLAYG-RFGVIADLALMANIFLIFGALTFLQ 420 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++++R+R+ + S ID LG + Sbjct: 421 ATLTLPGIAGIVLTIGMAVDANVLIFERIREEARA---GRSAITAIDAGYKRALGTILDA 477 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I+ + + G + FA+ +A GI S+ F + +L+ ++ A+ ++ Sbjct: 478 NVTTLIAAVILFQLGSGPVRGFAVTLAIGIFTTVFSA-FTFSRLLVALWVRTARPTKL 534 >gi|39935898|ref|NP_948174.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris CGA009] gi|39649752|emb|CAE28273.1| protein-export membrane protein secD [Rhodopseudomonas palustris CGA009] Length = 533 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 201/530 (37%), Positives = 311/530 (58%), Gaps = 9/530 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W + + L A+PNF P+S + +P + + LGLDL+GGSH++LEVD + Sbjct: 5 SRWKALAIILTALAVCLCAVPNFFPESTVKSWPKWA-QRHLVLGLDLQGGSHILLEVDAN 63 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 L D+ R L++ I + + + + + K+ Q + Sbjct: 64 SVKKDKLDSVRDDARRVLREARIAYTGLATKGDSVEVRISKDTDVPVALAKLRELSQPLG 123 Query: 124 SKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 L + +++L + I + + Q I + +++QS++I+ +R++++G E IQ Sbjct: 124 GLLGSNGQRSLEVSDAGGGLIRLTVPQAAIADRVRQSVDQSIQIVERRVNELGTVEPLIQ 183 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRD 235 R G+ RIL+Q+PG QDP+RL++LLG TAK+ F V + S M G Sbjct: 184 RQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSGDQAMGGNVPPDSELLMSAS 243 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 S Y+++ +V +SG L A FD +T +P+V F+ GAR+F T +N+G P A Sbjct: 244 SPKQPYVIKKQVLVSGADLTDAQPGFDQRTGEPIVSFRFNTNGARKFARATTENVGLPFA 303 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLD V++APVI + I G QISG+FT++ A LA +LRAG+LP L I+EER VG Sbjct: 304 IVLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPG 363 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG DSI KG A G +L+++FM++ Y +G+ A+ ++ +NV + +LSLL ATLTLP Sbjct: 364 LGQDSIEKGERAAYVGSILVIVFMLLTYRLFGVFANLAVAVNVAMIFGVLSLLNATLTLP 423 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL +G+AVDSN+L+ ERIREE R ++ ++D GF RA +TI DSNIT IA Sbjct: 424 GIAGIVLTVGIAVDSNVLIYERIREEIRAGRNAISAIDAGFKRALATILDSNITTFIAAA 483 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 VLF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++ +R+K+ + I Sbjct: 484 VLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVATWVRWKRPHHVPI 533 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 101/263 (38%), Gaps = 10/263 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 G + N R+ E++ + + + ++R G Sbjct: 271 QRTGEPIVSFRFNTNGARKFARATTENVGLPFAIVLDNEVISAPVIREPITGGSGQISGS 330 Query: 634 VLEMVKKKIT------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + TI VGP + ++ I KG + +I +++++ + Sbjct: 331 FTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGERAAYVGSILVIVFMLLT 390 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F + A + +++ G +L L +A ++ +G +V+ V++Y+R+R+ Sbjct: 391 YRL-FGVFANLAVAVNVAMIFGVLSLLNATLTLPGIAGIVLTVGIAVDSNVLIYERIREE 449 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 ++ +IS ID L + +++ FI+ + G + FA+ + GI+ Sbjct: 450 IRAGRNAIS---AIDAGFKRALATILDSNITTFIAAAVLFYIGTGPVRGFAVTLGIGIIT 506 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 ++ + I+ W+ + Sbjct: 507 TVFTAFTLTRLIVATWVRWKRPH 529 >gi|283769654|ref|ZP_06342550.1| protein-export membrane protein SecDF [Bulleidia extructa W1219] gi|283103922|gb|EFC05308.1| protein-export membrane protein SecDF [Bulleidia extructa W1219] Length = 765 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 157/677 (23%), Positives = 317/677 (46%), Gaps = 32/677 (4%) Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226 I +R++ +G++E I G++R+ +QL G +D + R+L+GTTAK++F V Sbjct: 72 ISKRVNVLGVNEPQISVEGNNRVRVQLAGAKDLNTARKLIGTTAKLTFRDVNDKE----- 126 Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 + L++ + + +S + A + + + + + Sbjct: 127 LADSSILQEGGASLAYQSGEPVVSFKVKDTAKFRAITREIAAKKNGQNVMVIWLDYSKGD 186 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + SG + I GNFT E+A LA ++ +GSLP+KL Sbjct: 187 SYQVESQKKAQGKEPKYVSAASVNQALSGDSIIQGNFTEESARTLANLINSGSLPVKLTE 246 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 + V A G D++ K A + G+ +++LFMI +Y G+VA + V + + Sbjct: 247 ISSNVVSAAYGQDALSKTAFAGMIGVGVVMLFMIAVYRLPGIVASIMLVSYVWAVFGIYA 306 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 L+GAT TL I +VLGIG+ VD+NI+ ERIR+E +S+ ++ G +++ +FD+ Sbjct: 307 LMGATFTLSGIGALVLGIGMTVDANIVNYERIRQEMYAGKSIRSAVREGQKLSFAAVFDA 366 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----------I 515 T LIA ++++ +G G V+GFA + +++ +++ + + + ++ + Sbjct: 367 QFTTLIAALIMYIWGSGTVKGFATMLIITVFMTLILNVGLSKILLDLLIKSGICDGHPTW 426 Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL------ 569 K I + ++ + + +I+ + L + Sbjct: 427 FAVKPNQIPDVTKGEKQFYTGTHHVNYVDKAKYLIRTAIVTIAIFLGLGIFNQFKGTGFL 486 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 N GIDF G +L + +N+ + V+ E + + + SFQ + + Sbjct: 487 NLGIDFSAGTKLTITSNKKITTMDVQKEFEKIGLKNYSFQASGD--------KTVYATTK 538 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 E+ K K + +V P + ++L++ + +++ IAM+ Y+ IR++ Sbjct: 539 QAISTEELSKVKKSLKEVYGQEPGDNVVTPVVGKDLVQNAFILTMVAWIAMMAYVTIRYE 598 Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK--N 747 W +AL I L+ D+ L F + +E N+ ++ +LT+IGYS+N+ ++V+DR+R+ N Sbjct: 599 WDYALSCIVALVHDVLIVLAVFGILRLEVNIELISVLLTIIGYSINNSIIVFDRIREQMN 658 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 ++ +I ++ +++ +I+ T+ ++ +S + V+ + G I +F M G+V Sbjct: 659 LRKNKENIDYKVVVNDAIDATIKEALNSSFTTIVPVIILLFLGSQAIFTFIFAMLVGLVA 718 Query: 808 AASSSIFIAAPILLFIY 824 SSIF++ + ++ Sbjct: 719 GTFSSIFVSPILWYYLR 735 >gi|210616350|ref|ZP_03291055.1| hypothetical protein CLONEX_03276 [Clostridium nexile DSM 1787] gi|210149837|gb|EEA80846.1| hypothetical protein CLONEX_03276 [Clostridium nexile DSM 1787] Length = 548 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 136/545 (24%), Positives = 262/545 (48%), Gaps = 15/545 (2%) Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 +D +++ P +N I GKA+I+G + E A L+ + +G+LP + + LG Sbjct: 1 MDEELISNPTVNAKITGGKAEITGMASQEEAQNLSDKINSGALPFSMETTNYNTISPTLG 60 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 + ++ A LVL LFMI Y G+++ ++ V L + ++S+ T+TLP I Sbjct: 61 NKALNAMALAAEIALVLTCLFMIAWYRLPGVISCLTLAFQVALQVLVISVPQYTITLPGI 120 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG++L G+AVD+NI+++ERI EE +K SV ++ G+ RA+S++ D N+T + +L Sbjct: 121 AGLILSAGMAVDANIIISERISEELKKGNSVRTAVKNGYKRAFSSVLDGNVTTAVVAGIL 180 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G G + F T+ ++I++ + + R M+ +IRYK N F + Sbjct: 181 MVLGSGTMLSFGYTLLTGVIINLLAGVWMSRYMLNSVIRYKL-----FNQEKWFRKKKEK 235 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 ++F + + S++ + + +G+ F GG+ L + D ++ Sbjct: 236 KILKFAETKKYFFLTSVVLLMAGLIWSSVNGMKLDTQFTGGVILRYTYSGEADTGNIQKE 295 Query: 598 LESLQIGDISFQNFDGE--KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 ++ + +++ Q + + + + E++ T Sbjct: 296 VQDVVDRNVNVQTAKNSATGEKNLVITLSGKKGLTPEQQKEILNTINEGNTNQFETAETS 355 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFF 711 + P I + ++ + +++S + +++YI +RF + A+ L+ DI L F Sbjct: 356 AIEPYIGAKALKNSAIAIVLSFLFIVVYIRVRFSALGGLASGVTAVIALLHDILIVLFIF 415 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +F I N VA LT+IGYS+ND +V+YDR+R++ + +L+D S ETL R Sbjct: 416 GIFKIPVNDAFVAVTLTIIGYSINDTIVLYDRIREHRNGAKNKSTLAELVDISTTETLQR 475 Query: 772 SVYTSMAAFISVLPMA----VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 S+ T+ + + V+G I +F++P+ G++ SSI IA P+ ++ + + Sbjct: 476 SINTAFTVVLCAFVIFVVSVVYGMESITNFSLPLLAGLISGCYSSICIAGPLWVWWEEHK 535 Query: 828 AKNAR 832 + + Sbjct: 536 ERIQK 540 >gi|325001117|ref|ZP_08122229.1| bifunctional preprotein translocase subunit SecD/SecF [Pseudonocardia sp. P1] Length = 744 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 175/717 (24%), Positives = 334/717 (46%), Gaps = 31/717 (4%) Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187 L +I + + A ++ +E++R R+D +G++E ++ R G + Sbjct: 27 TTAPTLGLDLRGGTQIVLETRDTEEVPADAAATDRVLEVLRGRVDGLGVAEPSLTRSGEN 86 Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247 RI+++LPG DP+ + LG TA+++ H V D G + Sbjct: 87 RIIVELPGLTDPAEAAETLGRTAQLTMHPV-----LGTGAPEAAPTADETGQPLQL-GPP 140 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD-------- 299 + G + A + ++ V + FD G R+ +T P Sbjct: 141 ALQGDMIASAQSVPSQQSVGFEVQVGFDGEGPGRWQALTGQAACAPPGDPQRRVAIVLDD 200 Query: 300 -----GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 +V + + G+ I+GNF+ E A L+ ++ G+LP+ + I+E+R VG Sbjct: 201 QVISSPQVDPSIACQVGMVGGQTTITGNFSQEQANELSVLIEGGALPVPVEIIEQRTVGP 260 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG+D+I A + G L +F+IV+Y G+VA ++ + A+ + LGATLTL Sbjct: 261 TLGADAISASAWAAIIGSALTAVFLIVVYRLVGVVAVVALGGYALTAYAVQTGLGATLTL 320 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P +A VL +G+AVD+N+L+ ER REE + + + G+ + S + D+ +T+L+A Sbjct: 321 PGLAAFVLAVGMAVDANVLIAERSREEYAARPRLERASENGYRFSLSAVGDAAVTSLLAA 380 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM----MIFIIRYKKMKSIDINPLSR 530 V+LF G VRGF +T+ + +++S+F+A+ + R + + ++ + I + Sbjct: 381 VLLFGLASGPVRGFGVTLVIGVVVSLFSALVLSRLLTLAVLRIPAVRRRPRITGIAAIGP 440 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + F+R + ++ + + ++ LF GL G++F GG + P+ Sbjct: 441 VRQRLEARDPGFLRNAAKVLAVAGVVLVVAVSGLFVRGLELGVEFTGGRLVEFTTTNPIT 500 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 R + + ++ + ++ + + Sbjct: 501 PEQAREAVTAAGYPNLQVTTTGDG-------AVGLRAGELADAEVAALRDSVAAAGGGAE 553 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + E++GP + EL R G++ + ++ A +Y+ RF+W GA+ L+ ++ +G Sbjct: 554 VLRDEMIGPSLGEELARGGLIALGVALAAQFLYLAFRFRWTLGAGAVAALLANVLVVVGV 613 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA G + +AA+LT+IGYSVND VVV+DR+R++ F ++ ++ TL Sbjct: 614 FAWTGRTLDGVFLAALLTVIGYSVNDTVVVFDRVREHWARRAK-DPFHRVVGSAVLSTLP 672 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 R+V T ++ + ++ + + GG+ + FA+ + GIVV S+I +A P+ + + Sbjct: 673 RTVNTGVSTLMILVMLLLLGGATLADFALALIIGIVVGTISTIVVAGPVAILLERRW 729 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 66/199 (33%), Gaps = 9/199 (4%) Query: 46 LGLDLRGGSHLVLEV-DEDDFVNGFL--QMYSDELRSFLKKEGIGVFSMRQIQ-NKITLS 101 LGLDLRGG+ +VLE D ++ + LR + G+ S+ + N+I + Sbjct: 32 LGLDLRGGTQIVLETRDTEEVPADAAATDRVLEVLRGRVDGLGVAEPSLTRSGENRIIVE 91 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV---ISH 158 A+ + Q + T E + L + + Sbjct: 92 LPGLTDPAEAAETLGRTAQLTMHPVLGTGAPEAAPTADETGQPLQLGPPALQGDMIASAQ 151 Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218 ++ + + + + + PG DP R ++ +S +V Sbjct: 152 SVPSQQSVGFEVQVGFDGEGPGRWQALTGQAACAPPG--DPQRRVAIVLDDQVISSPQVD 209 Query: 219 PNNSKKGFMFGVRFLRDSD 237 P+ + + M G + + Sbjct: 210 PSIACQVGMVGGQTTITGN 228 >gi|146340964|ref|YP_001206012.1| preprotein translocase subunit SecD [Bradyrhizobium sp. ORS278] gi|146193770|emb|CAL77787.1| Protein-export membrane protein secD [Bradyrhizobium sp. ORS278] Length = 533 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 208/529 (39%), Positives = 320/529 (60%), Gaps = 9/529 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + + L A+PNF P++ + +P+ + I LGLDL+GGS+L+LEVD + Sbjct: 6 RWKALGIILTALVVCLCAVPNFFPEATVKTWPAWA-QRHIVLGLDLQGGSYLLLEVDSNY 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L D++R L+ IG + + + + K+ Q + Sbjct: 65 VKKERLDSVRDDVRRTLRDAKIGYTGLTSKGDGVEVKITKDTDVPTALSKLRDLSQPLGG 124 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 L +++L + I + + Q I + + IEQS++I+ +RI+++G E IQR Sbjct: 125 LLGSSGQRSLEVSDAGNSLIRLTIPQAAITERVRQTIEQSIQIVERRINELGTVEPVIQR 184 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDS 236 G+ RIL+Q+PG QDP++L+ LLG TAKM F V S + + G S Sbjct: 185 QGTDRILVQVPGLQDPTQLKNLLGRTAKMEFRMVDTTVSPEQALQGRVPPDSEVLQSATS 244 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y+V+ +V +SG L+ A FD +T++P+V F+ GAR+F + T +N+G+P A+ Sbjct: 245 PNQPYVVKKQVLVSGGDLSDAQTGFDQRTNEPIVSFRFNSAGARKFAQATTENVGQPFAI 304 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLD +V++APVI + I G QISGNFT+++A LA +LRAG+LP L ++EER VG L Sbjct: 305 VLDNKVISAPVIREPITGGSGQISGNFTVQSANELAILLRAGALPAPLTVIEERTVGPGL 364 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G+DSI KG A G +L+++FM+V Y +G+ A+ ++ +NV + +LSLL ATLTLP Sbjct: 365 GADSIAKGELASYVGSILVIVFMLVTYRLFGVFANIAVVVNVAMIFGVLSLLNATLTLPG 424 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL +G+AVDSN+L+ ERIREE R ++ ++D GF RA +TI DSNIT IA V Sbjct: 425 IAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFIAAAV 484 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF+ G G VRGFA+T+G+ IL ++FTA ++ R ++ + +R+K+ +S+ I Sbjct: 485 LFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVAWWVRWKRPQSVPI 533 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 83/174 (47%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I KG + + +I +++++ + ++ F + A +++++ G +L Sbjct: 361 GPGLGADSIAKGELASYVGSILVIVFMLVTYRL-FGVFANIAVVVNVAMIFGVLSLLNAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ +IS ID L + +++ Sbjct: 420 LTLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAIS---AIDAGFKRALATILDSNI 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 FI+ + G + FA+ + GI+ ++ + I+ + W+ + Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVAWWVRWKRPQS 530 >gi|238917315|ref|YP_002930832.1| preprotein translocase SecD subunit / preprotein translocase SecF subunit [Eubacterium eligens ATCC 27750] gi|238872675|gb|ACR72385.1| preprotein translocase SecD subunit / preprotein translocase SecF subunit [Eubacterium eligens ATCC 27750] Length = 746 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 197/688 (28%), Positives = 345/688 (50%), Gaps = 22/688 (3%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + Q D S +E ++ +++R++ +ES + + G +RI +++PG D + + + Sbjct: 53 ITYQIKEDNFTSQDVEDTIYKLQKRVEG-KSTESQVYKEGDNRITVEIPGVTDANEILKE 111 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK- 264 LGT + F + + S GN Y ++G + A A D Sbjct: 112 LGTPGSLEF------------LDSTGYTAFSQGNDYTPL----LTGSDVKAAQAYTDTNS 155 Query: 265 --THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 V ++F + GA +F++ T NIG + +V DG V++AP + AI G A I+G Sbjct: 156 SEDTPYGVQLTFTDDGATKFYDATSANIGNRIYIVYDGEVVSAPNVKTAISGGTATITGM 215 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 + + A LA +R GS+P+ L V VGA LG +I A GL L+ LFMIV+ Sbjct: 216 ESFDEADNLATYIRVGSIPLTLEEVSSNIVGAQLGHAAIKSSLIAAAIGLALLCLFMIVM 275 Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 + GLVA S+ + L L L+S+ TLTLP IAGI+LGIG+AVD N+++ RIREE Sbjct: 276 FRIPGLVATLSLIIYTSLVLFLVSVYDLTLTLPGIAGIILGIGMAVDGNVIIYTRIREEI 335 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 +SV ++ G+++A S+I D N+T LIA +VL+ FG G V+GFA T+ + ++S+FT Sbjct: 336 GAGKSVESAILSGYNKATSSIVDGNVTTLIAALVLYIFGTGPVKGFATTLAVGNIVSIFT 395 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 ++ I + +M + + + + ++ V + + ++ Sbjct: 396 SLVITKVIMKLLYNFGIRDAKWYGKNVYRKTLDVLSIKKWAAIGSAVVIAAGIITMAVQA 455 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRL 621 L LN+ ++F GG ++ + N+ + +K ++ Sbjct: 456 GLGNRALNFSLEFVGGSTTTFTFDKEYTAEEIEDNIIPVIRDAAGITEVQQQKVADSTQV 515 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 ++ D + R + TI T+ + +S + R I+ VI++ I ML Sbjct: 516 SFKTSDLSLEQREAIENAVTAKYPIKDGTIVETDTISSSVSATVKRDAILSVILATICML 575 Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 IYI++RF+ FAL A+ L+ D+ L F+A I T +A +LT++GYS+N +++ Sbjct: 576 IYIFVRFRDIRFALAAVLALLHDVLVVLAFYAFARIPVGTTFIACMLTIVGYSINGTIII 635 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 +DR+R+ +K + + +L++ SI T+ R+VYTS+ I ++ + + G + + F +P Sbjct: 636 FDRIREQLKTANSKTNITELVNSSITSTMSRTVYTSITTLIMLIVLFIMGVTSVKEFTLP 695 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRA 828 + GIVV A SS+ + + + + + Sbjct: 696 LIVGIVVGAYSSVCLTSAMWYVMGGKKR 723 Score = 110 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 91/212 (42%), Gaps = 4/212 (1%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G ++ I ++ IVG ++ I+ ++ I + Sbjct: 209 TATITGMESFDEADNLATYIRVGSIPLTLEEVSSNIVGAQLGHAAIKSSLIAAAIGLALL 268 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 +++ + F+ L A +LI+ + L +++ + L +A ++ IG +V+ V++ Sbjct: 269 CLFMIVMFRIP-GLVATLSLIIYTSLVLFLVSVYDLTLTLPGIAGIILGIGMAVDGNVII 327 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 Y R+R+ + S I N+ V ++ I+ L + ++G + FA Sbjct: 328 YTRIREEIGA---GKSVESAILSGYNKATSSIVDGNVTTLIAALVLYIFGTGPVKGFATT 384 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +A G +V+ +S+ I I+ +Y++ ++A+ Sbjct: 385 LAVGNIVSIFTSLVITKVIMKLLYNFGIRDAK 416 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 64/173 (36%), Gaps = 9/173 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + I+YS+I + L+ + + S I LGLDL GG + ++ Sbjct: 1 MKYSLPKKIIYSIIVAVLLVGLVLTAFFGLNGKGYGS---TYDIDLGLDLAGGVSITYQI 57 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 ED+F + ++ +L+ ++ + ++ N+IT+ I ++ Sbjct: 58 KEDNFTSQDVEDTIYKLQKRVEGKSTESQVYKEGDNRITVEIPGVTDANEILKELGTPGS 117 Query: 121 GVNSK------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 + L+T ++ + + + N + + ++ + Sbjct: 118 LEFLDSTGYTAFSQGNDYTPLLTGSDVKAAQAYTDTNSSEDTPYGVQLTFTDD 170 >gi|160878874|ref|YP_001557842.1| SecD/SecF family protein-export membrane protein [Clostridium phytofermentans ISDg] gi|160427540|gb|ABX41103.1| protein-export membrane protein, SecD/SecF family [Clostridium phytofermentans ISDg] Length = 734 Score = 265 bits (676), Expect = 3e-68, Method: Composition-based stats. Identities = 171/668 (25%), Positives = 301/668 (45%), Gaps = 16/668 (2%) Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230 +D+ + I + D G + F + Sbjct: 73 LDRKATAAELESARNIIDIRLDNKYITDREVTIDKDGGYIIVRFPWKSDEKNYNPEQAIQ 132 Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATA--NFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + + + + + G H+ ++A + T VV++ FD+ GA+ F E T Sbjct: 133 EIGAMAQLSFRDPQGNIMLDGKHVVSSSASRRTNNVTTDNVVELIFDKEGAKLFEEATGK 192 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 IGKP+++ +D +++AP +N I GKA I T E A L+ + AG+LP L Sbjct: 193 LIGKPMSIYMDNDLISAPQVNSKITGGKAVIQNIKTYEEAKNLSEKINAGALPFSLTTSS 252 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 R + LG++++ A V + +FMI +Y G VA + L ++L L +S+ Sbjct: 253 FRTISPTLGNNALNVMLVAGAIAFVFVCIFMIGIYKLPGFVACLVLILQMVLQLLAISVP 312 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 TLTLP IAGI+L +G+AVD+NI++ ER+ EE +K + ++ G+ A+S++ D N+ Sbjct: 313 QYTLTLPGIAGIILSVGMAVDANIIIAERVSEELKKGATYRSAVTNGYKNAFSSVLDGNV 372 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 T ++L FG GA+ F T+ + +++++ + + + +++ + N Sbjct: 373 TTAAVAIILMIFGSGAMLSFGYTLLIGMIVNVLVGVFLSKTILLSFLEMD-----RFNEQ 427 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 F + ++ + ++ + IS I I + G++ F GG L Sbjct: 428 KYFREQKERKPLKIYQNKWIFLIISGTIFIVGIVGVIIKGVHLDTQFTGGAVLEYSITGN 487 Query: 589 VDLSVVRSNLESLQIGDISFQNFDG---EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 VD VRS + + + Q + + ++ + K Sbjct: 488 VDTETVRSKVSDVTNRPTTVQITKDNITDSSSVIITLAGTSGLNVAEQEKITGAVKGISD 547 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704 + + T +V P I + ++ ++ V+IS I ++IY+WIRF + A L+ DI Sbjct: 548 DLNAKLAQTYVVEPYIGAKALKNAVMAVVISIIFIIIYVWIRFSGLTSGITATLALVHDI 607 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 F +FGI N VA VLT+IGYS+ND +V+YDR+R+N K F +L+++S Sbjct: 608 ITVFFVFVIFGIPLNDAFVAVVLTIIGYSINDTIVIYDRVRENRKKNPK-QDFIELMNES 666 Query: 765 INETLGRSVYTSMAA----FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 +TL RSV TS+ I ++ ++ I F +PM FG++ SSI IA + Sbjct: 667 NTQTLHRSVNTSITTAVCVLIMLIASIIFRIDSIKVFTLPMLFGLISGCYSSICIAGVLW 726 Query: 821 LFIYDWRA 828 + Sbjct: 727 TMWEKRKR 734 Score = 47.0 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 21/125 (16%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD--FVN 67 + + + NF ++ G+D+RGG + E D Sbjct: 32 FIFLFVLLAIFGLGDNFKS------------VQKMRFGIDIRGGVEAIFEPQGLDRKATA 79 Query: 68 GFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRF-----KENIADKVTLFLQ 120 L+ + + L + I ++ + I + F E ++ Q Sbjct: 80 AELESARNIIDIRLDNKYITDREVTIDKDGGYIIVRFPWKSDEKNYNPEQAIQEIGAMAQ 139 Query: 121 GVNSK 125 Sbjct: 140 LSFRD 144 >gi|288958294|ref|YP_003448635.1| preprotein translocase SecD subunit [Azospirillum sp. B510] gi|288910602|dbj|BAI72091.1| preprotein translocase SecD subunit [Azospirillum sp. B510] Length = 532 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 227/527 (43%), Positives = 325/527 (61%), Gaps = 6/527 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W + + C G ++ LPNFL + L PS R+SLGLDLRGGSHL+LEVD Sbjct: 5 SRWKIYMILATCLAGFILILPNFLGRDTLAALPSWYANTRVSLGLDLRGGSHLLLEVDMA 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 + ++ D R L+ +G ++ + +T+ D + + V Sbjct: 65 TVIRDRVEGLVDGARQQLRTANVGYTALNAGERSLTVQLRDPAQADEAVKALRQLSSPVG 124 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + +L VT +++ LS+ + + AIEQS+EI+R+RID+ G++E TI R Sbjct: 125 RSALGVGQPDLDVTVNGGTVTLALSEVALRDRATQAIEQSIEIVRRRIDETGVNEPTIAR 184 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR------FLRDSD 237 G+ RIL+QLPG +DP R+++LLGTTAKM+F V N D Sbjct: 185 QGNDRILVQLPGVEDPDRIKRLLGTTAKMTFRLVDVNADPSTGRAPPGSEILPSAEGDRY 244 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 ++Y++ KVE+ G L A+A +P+T + VV+ F+ GA RF EVT+ N+G+P A+V Sbjct: 245 QSKYVIRKKVEVDGATLQNASAGTNPQTGEWVVNFEFNSAGANRFAEVTKQNVGRPFAIV 304 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +V++APVI + I G+ QISGNFT A LA +LRAG+LP L ++EER VG DLG Sbjct: 305 LDNKVISAPVIREPITGGRGQISGNFTAANANDLAVLLRAGALPAPLKVIEERTVGPDLG 364 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +DSI G A+V G V++ ++MI YG +G A ++F+N++LTLA LSLL ATLTLP I Sbjct: 365 ADSIRAGLTAVVVGFVMVCIYMIASYGLFGAFACSALFVNLVLTLAALSLLHATLTLPGI 424 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG++L +GLAVD+NIL+NERIREE +K + VF S++ GFSRAYSTI DSN+T I +L Sbjct: 425 AGVLLSLGLAVDANILINERIREETKKGRGVFASMEAGFSRAYSTIVDSNLTTAIKMALL 484 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 F FG G ++GFA+T+ ILISMFTA +VR MM+ +R + ++ Sbjct: 485 FIFGTGTIKGFAVTITFGILISMFTATVLVRLMMVTWLRRTRPAALP 531 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 77/172 (44%), Gaps = 4/172 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + IR G+ V++ + + IY+ + F A + L +++ TL +L Sbjct: 360 GPDLGADSIRAGLTAVVVGFVMVCIYMIASYGL-FGAFACSALFVNLVLTLAALSLLHAT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A VL +G +V+ +++ +R+R+ K ++ + V +++ Sbjct: 419 LTLPGIAGVLLSLGLAVDANILINERIREETK---KGRGVFASMEAGFSRAYSTIVDSNL 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 I + + ++G I FA+ + FGI+++ ++ + +++ Sbjct: 476 TTAIKMALLFIFGTGTIKGFAVTITFGILISMFTATVLVRLMMVTWLRRTRP 527 >gi|148255766|ref|YP_001240351.1| preprotein translocase subunit SecD [Bradyrhizobium sp. BTAi1] gi|146407939|gb|ABQ36445.1| protein-export membrane protein secD [Bradyrhizobium sp. BTAi1] Length = 533 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 205/529 (38%), Positives = 318/529 (60%), Gaps = 9/529 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + + L A+PNF P++ + +P+ + I LGLDL+GGS+L+LEVD + Sbjct: 6 RWKALGIILTALVVCLCAVPNFFPEATVKTWPAWA-QRHIVLGLDLQGGSYLLLEVDSNF 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L D++R L+ IG + + + + K+ Q + Sbjct: 65 VKKERLDAVRDDVRRTLRDAKIGYTGLVSRGDGVEVRITKDTDAPTALSKLRELSQPLGG 124 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 L +++L + I + + Q I + I IEQS++I+ +R++++G E IQR Sbjct: 125 LLGSSGQRSLEVSDAGGGLIRLTIPQAAITERIRQTIEQSIQIVERRVNELGTVEPVIQR 184 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237 G+ RIL+Q+PG QDP++L+ LLG TAKM F V + + G Sbjct: 185 QGTDRILVQVPGLQDPTQLKDLLGKTAKMEFRMVDTSVPPDQALQGRVPPDSEVLQSASP 244 Query: 238 -GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y+V+ +V +SG L+ A FD +T++P+V F+ G+R+F + T +N+G+P A+ Sbjct: 245 PNQPYVVKKQVLVSGGDLSDAQTGFDQRTNEPIVTFRFNSAGSRKFAQATTENVGQPFAI 304 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLD +V++APVI + I G QISGNFT+++A LA +LRAG+LP L ++EER VG L Sbjct: 305 VLDNKVISAPVIREPITGGSGQISGNFTVQSANELAILLRAGALPAPLTVIEERTVGPGL 364 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G+DSI KG A G +L+++FM+V Y +G+ A+ ++ +NV + +LSLL ATLTLP Sbjct: 365 GADSIAKGELASYVGSILVIVFMLVTYRLFGVFANIAVIINVAMIFGVLSLLNATLTLPG 424 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL +G+AVDSN+L+ ERIREE R ++ ++D GF RA +TI DSNIT IA V Sbjct: 425 IAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFIAAAV 484 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF+ G G VRGFA+T+G+ IL ++FTA ++ R ++ + +R+K+ +S+ I Sbjct: 485 LFYIGTGPVRGFAVTLGVGILTTVFTAFTLTRLIVAWWVRWKRPQSVPI 533 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 83/174 (47%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I KG + + +I +++++ + ++ F + A +I+++ G +L Sbjct: 361 GPGLGADSIAKGELASYVGSILVIVFMLVTYRL-FGVFANIAVIINVAMIFGVLSLLNAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ +IS ID L + +++ Sbjct: 420 LTLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAIS---AIDAGFKRALATILDSNI 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 FI+ + G + FA+ + GI+ ++ + I+ + W+ + Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGVGILTTVFTAFTLTRLIVAWWVRWKRPQS 530 >gi|75675961|ref|YP_318382.1| preprotein translocase subunit SecD [Nitrobacter winogradskyi Nb-255] gi|74420831|gb|ABA05030.1| SecD/SecF/SecDF export membrane protein [Nitrobacter winogradskyi Nb-255] Length = 532 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 200/528 (37%), Positives = 311/528 (58%), Gaps = 8/528 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + L A+PNF P++ + +P + + LGLDL+GGS+L+LEVD + Sbjct: 6 RWKALTIIVTALAICLCAVPNFFPEAQVKTWPKWA-QRHLVLGLDLQGGSYLLLEVDSNY 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L D+ R L+ I + + + + + K+ Q + Sbjct: 65 VKKEKLDQVRDDARKTLRDARIAYTGLAAKNGAVEVRISKEEEFQTALAKLRELSQPLGG 124 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 L +++L V++ + I + + Q + I ++EQS++II +R++++G E IQR Sbjct: 125 LLGSSGQRSLEVSSADGVIRMTVPQAAVTDRIRQSVEQSIQIIEKRVNELGTVEPLIQRQ 184 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDSD 237 G+ RIL+Q+PG QDP+RL+++LG TAKM F V + G + Sbjct: 185 GADRILVQVPGLQDPTRLKEILGKTAKMDFRMVDSSIPPDQAAQGRVPGDSEVLMSSQAP 244 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y+V +V +SG L A FD +T +P+V F+ GAR+F + T +N+G+P A++ Sbjct: 245 KTPYVVRKQVLVSGGDLTDAQPGFDSRTSEPIVTFRFNSNGARKFAQATTENVGQPFAII 304 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD V++APVI + I G QISGNFT++ A LA +LRAG+LP L I+EER VG LG Sbjct: 305 LDNEVISAPVIREPITGGSGQISGNFTVQEANDLAILLRAGALPAPLTIIEERTVGPGLG 364 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 DSI +G A G ++++LFM++ Y +G++A+ ++ +NV + +LSLL ATLTLP I Sbjct: 365 QDSIEQGELAAYVGSIMVILFMLLTYRFFGVIANIAVAINVAMIFGVLSLLNATLTLPGI 424 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGIVL +G+AVDSN+L+ ERIREE R ++ ++D GF RA +TI DSNIT IA VL Sbjct: 425 AGIVLTVGIAVDSNVLIYERIREELRAGRTAISAIDAGFKRALATILDSNITTFIAAAVL 484 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 F+ G G VRGFA+T G+ I+ ++FTA + R ++ +R+K+ +++ I Sbjct: 485 FYIGTGPVRGFAVTFGIGIITTVFTAFEVTRLIVATWVRWKRPQTVPI 532 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 82/173 (47%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I +G + + +I +++++ + +++ F + A + +++ G +L Sbjct: 360 GPGLGQDSIEQGELAAYVGSIMVILFMLLTYRF-FGVIANIAVAINVAMIFGVLSLLNAT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ T+IS ID L + +++ Sbjct: 419 LTLPGIAGIVLTVGIAVDSNVLIYERIREELRAGRTAIS---AIDAGFKRALATILDSNI 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 FI+ + G + FA+ GI+ ++ + I+ W+ Sbjct: 476 TTFIAAAVLFYIGTGPVRGFAVTFGIGIITTVFTAFEVTRLIVATWVRWKRPQ 528 >gi|320527508|ref|ZP_08028688.1| protein-export membrane protein SecD [Solobacterium moorei F0204] gi|320132065|gb|EFW24615.1| protein-export membrane protein SecD [Solobacterium moorei F0204] Length = 766 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 171/705 (24%), Positives = 326/705 (46%), Gaps = 32/705 (4%) Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201 I+ +++ + + + I +RI+ +G+SE I G++R+ +Q+ G +D Sbjct: 45 GFEILYQVEPLNEGATVDMSAVINSISKRINVLGVSEPQITVEGNNRVRVQIAGAKDLET 104 Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 R+L+GTTA ++F V N + + + + T Sbjct: 105 ARELIGTTANLTFRDVDNNELADSSILQEGGASLAYKDGEPIVSLKIADKEKFAAMTKAI 164 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 K V I + + + + A + + Q+ +G ISG Sbjct: 165 AKKGKGANVMIVWLD-----WQDGDTYAAEAAKAKNGEEPKYISAASVQSEINGDCIISG 219 Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381 NFT ++A LA ++ +GSLP+KL + V A G+D++ A V G+ ++++ MI Sbjct: 220 NFTEDSARTLANLINSGSLPVKLTELSSNVVSASYGADALQVTALAGVIGVAIVMVVMIF 279 Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 +Y GL++ + V + SL+GA TL I +VLG+G+ VD+NI+ ERIR+E Sbjct: 280 VYRLPGLISSIMLAFYVWAVFGIYSLMGAVFTLSGIGALVLGVGMTVDANIINYERIRQE 339 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 K +SV ++ G +++ IFD+ T L+A ++++ +G G V+GFA + +++++++ Sbjct: 340 LYKGRSVRAAVAEGGKLSFAAIFDAQFTTLLAALIMYIWGTGTVKGFATMLIITVVMTLL 399 Query: 502 TAISIVRAMMIFIIRYKK-----------MKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550 + + ++ I+ I +M + V Sbjct: 400 LNVGFSKWLLSLIVDSGICDGKPGLFAVKKNQIPDVSKGEKQFYTGAFKFDYMGKAKYAV 459 Query: 551 GISILFSICSICLLFTH------GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 S+ + S+ L F + LN GIDF G +L V + + V++S V + +E+L Sbjct: 460 AASVSIIVLSLALSFFNLAKGNGFLNLGIDFASGTKLTVTSEQIVNVSDVEAEMETLGYK 519 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 S+Q+ + A ++ K IV P + E Sbjct: 520 GFSYQSAGE--------HTVYATTKASLDKEQLTTIKSAFEKKYGVEPGDNIVTPVVGSE 571 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L+R ++ +++ IAML YI R+++ +A G + L+ D+ F + +E N+ ++ Sbjct: 572 LVRSAVILTVVAWIAMLAYITFRYEFDYAFGCLVALVHDVLIVTAVFGILRLEVNIELIS 631 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS--FRDLIDKSINETLGRSVYTSMAAFIS 782 +LT+IGYS+N+ ++V+DR+R+ + L +R + +++I+E + S+ +S+ I Sbjct: 632 VLLTIIGYSINNSIIVFDRVREEVNLRNRIEPTEYRSIANEAIDEAIKMSLMSSLTTIIP 691 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 V+ + + G S I +F M G++ SSS+F+AA I + + Sbjct: 692 VILLLIMGSSSIFTFVFAMLIGLIAGTSSSVFVAAYIWCLLREKS 736 Score = 58.5 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 56/475 (11%), Positives = 130/475 (27%), Gaps = 15/475 (3%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG- 68 L + + LL L +S++ ++LGLDLRGG ++ +V+ + Sbjct: 11 LAVFVLIVLLLGTLIGTTIRSIISS---------LNLGLDLRGGFEILYQVEPLNEGATV 61 Query: 69 FLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKL- 126 + + + + G+ + + N++ + A ++ E + + + Sbjct: 62 DMSAVINSISKRINVLGVSEPQITVEGNNRVRVQIAGAKDLETARELIGTTANLTFRDVD 121 Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186 N + + ++ ++ + + I+ + + G + + Sbjct: 122 NNELADSSILQEGGASLAYKDGEPIVSLKIADKEKFAAMTKAIAKKGKGANVMIVWLDWQ 181 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL--VE 244 + + + A + F + N V+ Sbjct: 182 DGDTYAAEAAKAKNGEEPKYISAASVQSEINGDCIISGNFTEDSARTLANLINSGSLPVK 241 Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304 S + A+ T V M F I + V Sbjct: 242 LTELSSNVVSASYGADALQVTALAGVIGVAIVMVVMIFVYRLPGLISSIMLAFYVWAVFG 301 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + A+ + + + + R A+ G S Sbjct: 302 IYSLMGAVFTLSGIGALVLGVGMTVDANIINYERIRQELYKGRSVRAAVAEGGKLSFAAI 361 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 A L+ ++ I G A I V+ L + L+L +GI G Sbjct: 362 FDAQFTTLLAALIMYIWGTGTVKGFATMLIITVVMTLLLNVGFSKWLLSLIVDSGICDGK 421 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 + + ++ + D +A + S +++ + FF Sbjct: 422 PGLFAVKKNQIPDVSKGEKQFYTGAFKFD-YMGKAKYAVAASVSIIVLSLALSFF 475 >gi|254500330|ref|ZP_05112481.1| protein-export membrane protein SecD [Labrenzia alexandrii DFL-11] gi|222436401|gb|EEE43080.1| protein-export membrane protein SecD [Labrenzia alexandrii DFL-11] Length = 536 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 198/531 (37%), Positives = 321/531 (60%), Gaps = 10/531 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + L ++ G++ LPNF L+ +P +PKN++ LGLDL+GG++L+ E+D+ D Sbjct: 6 RWKIALIVLVVAAGIVTTLPNFFSAKTLESWPDFLPKNQMVLGLDLQGGAYLLYEIDQQD 65 Query: 65 FVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 ++ ++ ++R+ L++ IG + + + D +++ + + Sbjct: 66 YIEKRMKALVGDIRAALRENPRIGYTGLGVQGDAAQVRIRDLTRLAEAEERLEPLVNPLV 125 Query: 124 SKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S + + L + + + S + +++ ++QS+E+IR+R+D++G +E I Sbjct: 126 SNVFSGQQVDEFELSVSDDGLVRFTYSDQGLTDRMTNIVQQSIEVIRRRVDELGTTEPNI 185 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234 QR G+ RIL++ PGE DP RL+ L+G TA+++FH V + S M + Sbjct: 186 QRQGTDRILVEAPGEDDPERLKDLVGQTAQLTFHMVDTSMSGDQAMQSRPPVGTVVMMSV 245 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 D YL+E+ ++G L A +FD ++++PVV+ F+ GAR+F VT+ N+G+P Sbjct: 246 DDPPLPYLLEETPLLAGEDLVDAQVSFDQRSNEPVVNFRFNTSGARKFATVTQQNVGRPF 305 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A+VLD V++APVI + I G QISGNFT+E A LA +LRAG+LP KL ++EER++G Sbjct: 306 AIVLDEEVISAPVIREPITGGSGQISGNFTVEGANDLAVLLRAGALPAKLTVIEERSIGP 365 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG+DSI G A + L+++FMI+ YG++G++AD ++ N+ L L+ L ATLTL Sbjct: 366 GLGADSIEAGKMASIIAGALVIIFMILAYGRFGVIADVALVGNMFLIFGALTALQATLTL 425 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL IG+AVD+N+L+ ERIREE R +S ++D G+ RA TI D+NIT LIA Sbjct: 426 PGIAGIVLTIGMAVDANVLIFERIREEARAGRSAITAIDAGYKRALGTILDANITTLIAA 485 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+LF G G VRGFA+T+ + I ++F+A + R M+ +RY++ + I Sbjct: 486 VILFQLGSGPVRGFAVTLAIGIFTTVFSAFTFSRLMVALWVRYRRPSVLPI 536 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G + II+ ++I++ + + F + A L+ ++ G Sbjct: 362 SIGPGLGADSIEAGKMASIIAGALVIIFMILAYG-RFGVIADVALVGNMFLIFGALTALQ 420 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++++R+R+ + S ID LG + Sbjct: 421 ATLTLPGIAGIVLTIGMAVDANVLIFERIREEARA---GRSAITAIDAGYKRALGTILDA 477 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G + FA+ +A GI S+ F + +++ ++ + + Sbjct: 478 NITTLIAAVILFQLGSGPVRGFAVTLAIGIFTTVFSA-FTFSRLMVALWVRYRRPS 532 >gi|331694403|ref|YP_004330642.1| protein-export membrane protein SecD [Pseudonocardia dioxanivorans CB1190] gi|326949092|gb|AEA22789.1| protein-export membrane protein SecD [Pseudonocardia dioxanivorans CB1190] Length = 761 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 190/731 (25%), Positives = 346/731 (47%), Gaps = 32/731 (4%) Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + G + L +I + + A ++ +E++R R+D +G++E Sbjct: 19 VGGATALALTGSPTLGLDLRGGTQIVLETRDAPDVVADAAATDRVLEVLRGRVDGLGVAE 78 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 ++ R G RI+++LPG QDP+ +LG TA+++ H V D G Sbjct: 79 PSLTRSGEDRIVVELPGLQDPAEAADVLGRTAQLTIHPV-------LATTAGEATVDETG 131 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD---------- 288 +V + + + VVD+SF G R+ +T Sbjct: 132 APIVVGPAALVGEDVDSARATSGVQGVLGSVVDVSFSAEGGDRWQALTAQTACAAPGDPA 191 Query: 289 ---NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 I V+ +V + + G QISG+F+ E A LA +++ G+LP+ + Sbjct: 192 RRIAIVLDSQVISSPQVDPSIGCGVGMYGGSTQISGSFSQEQASELAVLIQGGALPVPVE 251 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 I+E+R VG LG+ +I T A + G L LF++V Y GLVA ++ ++ A L Sbjct: 252 IIEQRTVGPTLGASAIEASTLAALVGTALTALFLLVAYRLAGLVAVVALAGYAVVAYAGL 311 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 LGATLTLP +AG VL IG+AVD+N+LV ER REE + + + ++G+ A++ + D Sbjct: 312 IALGATLTLPGLAGFVLAIGMAVDANVLVAERAREEYARRPRLERASELGYRGAFTAVVD 371 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 S +T L+A +LF+ G VRGF +T+ L +++S+F+A+ + R + I+++R ++ Sbjct: 372 SAVTTLLAGALLFWLASGPVRGFGVTLTLGVVVSLFSALVLSRLLTIWLLRRGAVRRRPR 431 Query: 526 NP----LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 + + ++ +R + S + + ++ + GL+ G++F GG + Sbjct: 432 WTGLATIGPVRRRLERVSPDILRPAGRLLACSAVVVVVALAGIALRGLDLGVEFTGGRSV 491 Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 PVD R+ + +G + Q + + ++ Sbjct: 492 EFSTTNPVDADAARAAVAEAGLGGLPVQTTGDGG-------IAVRGNDIDDADVAALRAS 544 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + + ++ E++GP + EL R ++ + ++ +A L+Y+ IRF+W F GA+ L Sbjct: 545 LAAAGGGAQVEQDELIGPSLGAELARGALIALGVALLAQLVYLAIRFRWTFGAGAVAALA 604 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 +++ +G+FA G + VAA+LT+IGY+VND VVV+D + + F + Sbjct: 605 TNVSIVVGWFAWTGRTIDGVFVAALLTVIGYTVNDSVVVFD-RIRAERAGRRREPFHRVA 663 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ TL R+V T ++ + + + V GG + FA+ + GIV S++ +A P+ + Sbjct: 664 GSAVLSTLPRTVNTGLSTLVILGALLVLGGETLADFALALILGIVAGTVSTVTVAVPLAI 723 Query: 822 FIYDWRAKNAR 832 + R Sbjct: 724 VLQRRFGDRDR 734 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 6/209 (2%) Query: 46 LGLDLRGGSHLVLEVDEDDFVNGF---LQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLS 101 LGLDLRGG+ +VLE + V + LR + G+ S+ + ++I + Sbjct: 33 LGLDLRGGTQIVLETRDAPDVVADAAATDRVLEVLRGRVDGLGVAEPSLTRSGEDRIVVE 92 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-VISHAI 160 + AD + Q + V T I + + + + A Sbjct: 93 LPGLQDPAEAADVLGRTAQLTIHPVLATTAGEATVDETGAPIVVGPAALVGEDVDSARAT 152 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 ++ +D +E + DP+R ++ + +S +V P+ Sbjct: 153 SGVQGVLGSVVDVSFSAEGGDRWQALTAQTACAAP-GDPARRIAIVLDSQVISSPQVDPS 211 Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 M+G +Q + + Sbjct: 212 IGCGVGMYGGSTQISGSFSQEQASELAVL 240 >gi|316934006|ref|YP_004108988.1| protein-export membrane protein SecD [Rhodopseudomonas palustris DX-1] gi|315601720|gb|ADU44255.1| protein-export membrane protein SecD [Rhodopseudomonas palustris DX-1] Length = 533 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 202/530 (38%), Positives = 313/530 (59%), Gaps = 9/530 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W + + I L A+PNF P+S + +P + + LGLDL+GGSH++LEVD + Sbjct: 5 SRWKALAIILTALIVCLCAVPNFFPESTVKNWPKWA-QRHLVLGLDLQGGSHILLEVDAN 63 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 L+ D+ R L++ I + + + + K+ Q + Sbjct: 64 SVKKDKLESVRDDARRVLREARIAYTGLSTKGDSVEVRITKDTDVPTALTKLRELSQPLG 123 Query: 124 SKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 L + ++NL + I + + Q I + +++QS++I+ +R++++G E IQ Sbjct: 124 GLLGSNGQRNLEVSDAGGGLIRLTVPQAAISDRVRQSVDQSIQIVERRVNELGTVEPLIQ 183 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------- 235 R G+ RIL+Q+PG QDP+RL++LLG TAK+ F V + S M G Sbjct: 184 RQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDASVSGDQAMAGNVPSDSELLMSAS 243 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 S Y+++ +V +SG L A FD ++ +P+V F+ GAR+F T +N+G P A Sbjct: 244 SPKQPYVIKKQVLVSGADLTDAQPGFDQRSGEPIVSFRFNTNGARKFARATTENVGLPFA 303 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLD V++APVI + I G QISG+FT++ A LA +LRAG+LP L I+EER VG Sbjct: 304 IVLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPG 363 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG DSI KG A G +L+++FM++ Y +G+ A+ ++ +NV + +LS+L ATLTLP Sbjct: 364 LGQDSIEKGERAAYVGSILVIVFMLLTYRLFGVFANIAVAVNVAMIFGILSMLNATLTLP 423 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL +G+AVDSN+L+ ERIREE R ++ ++D GF RA STI DSNIT IA Sbjct: 424 GIAGIVLTVGIAVDSNVLIYERIREELRSGRNAISAIDAGFKRALSTILDSNITTFIAAA 483 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 VLF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++ +R+K+ + + I Sbjct: 484 VLFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVAAWVRWKRPQVVPI 533 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 99/263 (37%), Gaps = 10/263 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 G + N R+ E++ + + + ++R G Sbjct: 271 QRSGEPIVSFRFNTNGARKFARATTENVGLPFAIVLDNEVISAPVIREPITGGSGQISGS 330 Query: 634 VLEMVKKKIT------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + TI VGP + ++ I KG + +I +++++ + Sbjct: 331 FTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGERAAYVGSILVIVFMLLT 390 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F + A + +++ G ++ L +A ++ +G +V+ V++Y+R+R+ Sbjct: 391 YRL-FGVFANIAVAVNVAMIFGILSMLNATLTLPGIAGIVLTVGIAVDSNVLIYERIREE 449 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 ++ + + ID L + +++ FI+ + G + FA+ + GI+ Sbjct: 450 LR---SGRNAISAIDAGFKRALSTILDSNITTFIAAAVLFYIGTGPVRGFAVTLGIGIIT 506 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 ++ + I+ W+ Sbjct: 507 TVFTAFTVTRLIVAAWVRWKRPQ 529 >gi|298291858|ref|YP_003693797.1| protein-export membrane protein SecD [Starkeya novella DSM 506] gi|296928369|gb|ADH89178.1| protein-export membrane protein SecD [Starkeya novella DSM 506] Length = 532 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 210/529 (39%), Positives = 319/529 (60%), Gaps = 8/529 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W + I L+ +P+ LP + D P + + +I LGLDL+GGS++VL+VD + Sbjct: 5 SKWKAFAILAVSAIICLMVVPSLLPPKVYDSLPGFL-QRKIVLGLDLQGGSYIVLQVDSN 63 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 + L+ D+ R L+ +G + N + + D + + ++ Q + Sbjct: 64 EVRTARLEQLRDDARRVLRDAKVGYTGLNIQGNSVQVRIRDGQDADAAFTQLRTLAQPIG 123 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 L+ + + V I++ S + A+ QS+EIIR+RIDQ+G +E +IQR Sbjct: 124 GALSTSGQLDTDVARDGNVITLTPSTAGVQSRTIQAVSQSIEIIRKRIDQLGTTEPSIQR 183 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------RDS 236 G+ RI +Q+PG QDPSRL+ LLG TAK++F V + + + + G +D+ Sbjct: 184 QGADRIQVQVPGLQDPSRLKALLGQTAKLTFRLVDNSMTAQQALQGRPPAGTEVLYSQDN 243 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 YL+E +V ++G L A FDP+T +P+V F+ GARRF E T+ N+G+P A+ Sbjct: 244 PPVPYLIEQRVLVAGEDLTDAQPGFDPQTREPIVTFRFNTNGARRFAEATQANVGRPFAI 303 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 +LD V++APVI + I G QISGNFT++ A LA +LRAG+LP+ L +VEER VG L Sbjct: 304 ILDNHVISAPVIREPILGGSGQISGNFTVQQANDLAILLRAGALPVPLQVVEERTVGPGL 363 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G+DSI G A + G + LFMI YG +G++A ++ +NV + +L++LGATLTLP Sbjct: 364 GADSIRAGLIASIVGASAVALFMIATYGLFGVIAVVAVAINVGMIFGVLAMLGATLTLPG 423 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAG+VL +G+AVDSN+L+ ERIREE R +S ++D GF+RA +TI DSNIT IA V Sbjct: 424 IAGVVLTVGIAVDSNVLIYERIREEARAGRSAISAIDAGFTRALATILDSNITTFIAAAV 483 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF+ G G VRGFAIT G+ I+ ++FTA ++ R M +R+++ + + I Sbjct: 484 LFYIGSGPVRGFAITFGIGIITTVFTAFTLTRLMAAVWVRWRRPQRVPI 532 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + IR G++ I+ A A+ +++ + F + A+ + +++ G A+ G Sbjct: 360 GPGLGADSIRAGLIASIVGASAVALFMIATYGL-FGVIAVVAVAINVGMIFGVLAMLGAT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A V+ +G +V+ V++Y+R+R+ + S ID L + +++ Sbjct: 419 LTLPGIAGVVLTVGIAVDSNVLIYERIREEARA---GRSAISAIDAGFTRALATILDSNI 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 FI+ + G + FAI GI+ ++ F ++ ++ + R+ Sbjct: 476 TTFIAAAVLFYIGSGPVRGFAITFGIGIITTVFTA-FTLTRLMAAVWVRWRRPQRV 530 >gi|115524913|ref|YP_781824.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris BisA53] gi|115518860|gb|ABJ06844.1| protein-export membrane protein SecD [Rhodopseudomonas palustris BisA53] Length = 533 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 198/529 (37%), Positives = 308/529 (58%), Gaps = 9/529 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + L A+PNF P++ + +P + + LGLDL+GGSH++LEVD + Sbjct: 6 RWKALGIILTALAICLCAVPNFFPEATVKSWPKWA-QRHLVLGLDLQGGSHILLEVDSNS 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L D++R L+ I + + + + + + K+ Q + Sbjct: 65 VKKDKLDQVRDDVRRTLRDAKIPYTGLSARADAVEVRISRDTDQATALTKLRELSQPLGG 124 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + +++L + + ++Q I + I ++EQS++I+ +R++++G E IQR Sbjct: 125 LMGTSGQRSLDVSDAGGGLFKLTVTQAAITERIRQSVEQSIQIVERRVNELGTVEPLIQR 184 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------- 236 G RIL+Q+PG QDP+RL++LLG TAK+ F V S G Sbjct: 185 QGIDRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSTVSGDQARLGNVPADSDLLLGAQA 244 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y+++ ++ +SG L A FD ++ +P+V F+ GAR+F T +N+G+P A+ Sbjct: 245 PKQPYVIKKQILVSGGDLTDAQPGFDQRSGEPIVSFRFNTSGARKFAVATTENVGQPFAI 304 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLD V++APVI + I G QISG+FT++ A LA +LRAG+LP L I+EER VG L Sbjct: 305 VLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPGL 364 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G DSI KG A G +L+++FM++ Y +G+ A+ ++ +NV + +LSLL ATLTLP Sbjct: 365 GQDSIEKGELAAYIGSILVIIFMLLTYRLFGVFANIAVAINVAMIFGVLSLLNATLTLPG 424 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL +G+AVDSN+L+ ERIREE R ++ ++D GF RA +TI DSNIT IA V Sbjct: 425 IAGIVLTVGIAVDSNVLIYERIREEIRNGRTAISAIDAGFKRALATILDSNITTFIAAAV 484 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF+ G G VRGFA+T+G+ IL ++FTA ++ R ++ +R K+ S+ I Sbjct: 485 LFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVATWVRVKRPHSVPI 533 Score = 141 bits (354), Expect = 6e-31, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 80/174 (45%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I KG + I +I ++I++ + ++ F + A + +++ G +L Sbjct: 361 GPGLGQDSIEKGELAAYIGSILVIIFMLLTYRL-FGVFANIAVAINVAMIFGVLSLLNAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ + ID L + +++ Sbjct: 420 LTLPGIAGIVLTVGIAVDSNVLIYERIREEIR---NGRTAISAIDAGFKRALATILDSNI 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 FI+ + G + FA+ + GI+ ++ + I+ + ++ Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVATWVRVKRPHS 530 >gi|16126234|ref|NP_420798.1| preprotein translocase subunit SecD [Caulobacter crescentus CB15] gi|221235007|ref|YP_002517443.1| preprotein translocase subunit SecD [Caulobacter crescentus NA1000] gi|13423458|gb|AAK23966.1| protein-export membrane protein SecD [Caulobacter crescentus CB15] gi|220964179|gb|ACL95535.1| protein translocase subunit secD [Caulobacter crescentus NA1000] Length = 532 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 187/530 (35%), Positives = 307/530 (57%), Gaps = 10/530 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W ++L + G+L LPN LPQ LD FP +PK +++LGLDL+GGS+L+ EVD D Sbjct: 5 SRWKIVLVTFSVIFGILFTLPNLLPQKTLDSFPDWLPKQKLNLGLDLQGGSYLMYEVDTD 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 L+ +++R+ L+ E I + ++ + L AD+ + A+ + + Sbjct: 65 ALRKERLKNLVEDVRTVLRGEQITFGELAEVNGTVRLRIADAAKVDEAANLLRRSVGSPF 124 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + + ++ + + Q S A++QS+E IR+RID +G E I R Sbjct: 125 AGSISG-RDVSVDKRDDQRLELSFIPEAAAQDASMAVDQSIETIRRRIDTLGTKEPNITR 183 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-------VRFLRDS 236 G+ RI+IQ GE DP RL+ ++G TAK++F V + + + G D Sbjct: 184 QGADRIVIQAAGESDPERLKAVVGKTAKLTFQMVDDSVTPEDIAAGRIPPGSEALPSDDR 243 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y+V + +SG L + +FD + P V F+ G+R+F + T N+GK A+ Sbjct: 244 YQAAYVVRKRALVSGDELVDSRQSFDDRG-APAVSFKFNGSGSRKFGDATARNVGKRFAI 302 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLDGR+++AP IN AI G I+G+FT E+A LA +LR+G+LP L + ++ VGA+L Sbjct: 303 VLDGRIISAPTINGAILGGSGIITGSFTAESASDLALLLRSGALPAPLKVEQQNTVGAEL 362 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLP 415 G+D++ G + + + IV+FMI+ YG +G ++ ++ +N +L +A +SL ATLTLP Sbjct: 363 GADAVRAGAISTLVAFITIVVFMILSYGLLFGGISVIALIINGMLIVAAMSLTQATLTLP 422 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAG++L + +AVD+N+L+ ER+R+E R +S + D GFSRA +TI D+N+T L+A Sbjct: 423 GIAGLILTLAVAVDANVLIYERMRDEARAGKSPILAADAGFSRAMTTIIDANVTTLVAAG 482 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 ++F FG G VRGFA T+ + + S+FTA+ + + ++ + R + K + I Sbjct: 483 IMFAFGAGPVRGFAWTLSIGVFTSVFTAVLVSQLLIGWWFRAARPKKLPI 532 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 82/182 (45%), Gaps = 4/182 (2%) Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + VG ++ + +R G + +++ I +++++ + + F ++ LI++ + Sbjct: 353 EQQNTVGAELGADAVRAGAISTLVAFITIVVFMILSYGLLFGGISVIALIINGMLIVAAM 412 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +L L +A ++ + +V+ V++Y+RMR + S D + + Sbjct: 413 SLTQATLTLPGIAGLILTLAVAVDANVLIYERMRDEARA---GKSPILAADAGFSRAMTT 469 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ ++ M +G + FA ++ G+ + +++ + + +L+ + A+ Sbjct: 470 IIDANVTTLVAAGIMFAFGAGPVRGFAWTLSIGVFTSVFTAVLV-SQLLIGWWFRAARPK 528 Query: 832 RI 833 ++ Sbjct: 529 KL 530 >gi|295688851|ref|YP_003592544.1| protein-export membrane protein SecD [Caulobacter segnis ATCC 21756] gi|295430754|gb|ADG09926.1| protein-export membrane protein SecD [Caulobacter segnis ATCC 21756] Length = 532 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 185/528 (35%), Positives = 306/528 (57%), Gaps = 7/528 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W +I ++ G+L +LPN LPQ LD P+ +P +++LGLDL+GGS+L+ EVD + Sbjct: 5 SRWKIIAVTLSVVFGILFSLPNVLPQKTLDAMPAWLPHQKLNLGLDLQGGSYLLYEVDTE 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 L ++ R+ L+ E I + Q I++ D + + + L G Sbjct: 65 ALHRERLSNLMEDTRTQLRSEQIPFGELNQQGEIISVRIGDPARYNDALNLLRKNL-GAP 123 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + K + + I + I A++QS+E IR+RID +G E +I R Sbjct: 124 LAGAIGGKDVSVSGKGDNRIEVRFVPEAIKADAVKAVDQSIETIRRRIDSLGTKEPSINR 183 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF------LRDSD 237 G +RI+IQ PGE DP +LR ++G TAK++F V + + G D Sbjct: 184 QGENRIMIQAPGESDPEKLRAIIGKTAKLTFQMVDETVTPEDMQAGRIPPGSEVLPGDQY 243 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y+V+ + +SG L A FDP++ PVV ++F+ G R+F E+T NIGK A+V Sbjct: 244 APYYVVKKRAIVSGEELTNAQQQFDPQSGNPVVQLTFNASGGRKFGEMTGRNIGKRFAIV 303 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LD +VL+AP I AI G I+GNFT+++A L+ +LR+G+LP LN+ ++R V A+LG Sbjct: 304 LDDKVLSAPTIQSAITGGSGIITGNFTVQSANELSLLLRSGALPAPLNVEDQRTVTAELG 363 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 +D++ G+ ++ G V + +F+I+ YG +G A ++ +NV+L + ++S+ ATLT P I Sbjct: 364 ADAVKAGSISLAIGAVSMFVFVILAYGLFGGFAAIALVVNVLLIVGIMSMTQATLTFPGI 423 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG++L + +AVD+N+L+ ER+R+E ++ + D G+ A ++I D+NIT+LI+ +++ Sbjct: 424 AGLILTLAVAVDANVLIYERMRDEANAGRTPMAAADHGYKLALTSILDANITSLISGLIM 483 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 F FG G V+GFA T+ + + S+FTAI I + ++ + + K K + I Sbjct: 484 FSFGSGPVKGFAWTLVIGVFTSLFTAIFITQVLIGWWFKTAKPKKLPI 531 Score = 129 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 79/175 (45%), Gaps = 5/175 (2%) Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 ++ + ++ G + + I A++M +++ + + + AI L++++ +G ++ Sbjct: 360 AELGADAVKAGSISLAIGAVSMFVFVILAYGLFGGFAAI-ALVVNVLLIVGIMSMTQATL 418 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 +A ++ + +V+ V++Y+RMR + D L + ++ Sbjct: 419 TFPGIAGLILTLAVAVDANVLIYERMRDEANA---GRTPMAAADHGYKLALTSILDANIT 475 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + IS L M +G + FA + G+ + ++IFI +L+ + AK ++ Sbjct: 476 SLISGLIMFSFGSGPVKGFAWTLVIGVFTSLFTAIFI-TQVLIGWWFKTAKPKKL 529 >gi|257063455|ref|YP_003143127.1| protein-export membrane protein SecF/protein-export membrane protein SecD [Slackia heliotrinireducens DSM 20476] gi|256791108|gb|ACV21778.1| protein-export membrane protein SecF/protein-export membrane protein SecD [Slackia heliotrinireducens DSM 20476] Length = 855 Score = 261 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 157/858 (18%), Positives = 310/858 (36%), Gaps = 111/858 (12%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60 R N WLV++ +++ + + +P P+ RI+ LDL+GG +VL Sbjct: 18 RRNIWLVVVTAVLVIASIAMFMP---------------PQERINQALDLQGGLSVVLSAE 62 Query: 61 --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTL 117 D + ++ + S + G ++ Q N+I + E + + Sbjct: 63 SNDGSEVTAEQMETSRSIIESRVNLLGASEAVVQLQGDNQILVQIPGLSDTEEALETIGK 122 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIV--LSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 + ++L+ ++++ ++ + ++ S+E+ + I Sbjct: 123 TGKLEFARLDSFTDQDVVNAIQTGAYLSQETVTDEAGNVFVTGEGTPSLEVEPGTYEPIV 182 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235 E+ + D + + A+ S V + + GV Sbjct: 183 TGENINRVTVGRESETSQFYAVDLNLDSEGTKAFAEASADLVEDHGQIVIILDGVVQSAP 242 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 + ++ + V I+G + Sbjct: 243 AVQSEI-PDGNVAITGNYSLAEAQ------------------------------------ 265 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 + + +F +TA + L G+L + + + Sbjct: 266 -------------SLVTVLESGSLPVSFEYQTAQTVGPTLGQGALRSGVIVALIGLLLVM 312 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 L YKG I A + + + + G++A S F L+LA ++ + T+ + Sbjct: 313 LYLLFFYKGLGFITAAAMAVFACLYL-----GILALLSHFNLFSLSLAGIAGVVLTIGMA 367 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 DS+IL ER REE R +SV + G T D+++ L++ + Sbjct: 368 ------------ADSSILTLERFREEIRLGRSVRAASITGVRHGIMTSIDADLVTLVSAL 415 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535 LFF +V+GF +T+ L I + + ++ + K+ + Sbjct: 416 ALFFLAAASVKGFGLTLALGIFCDILMMLLFKAPLIRLLAPKAIAKNPGFWGVKDCEEAA 475 Query: 536 DCIA-------------------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576 + R + +++ + + +L G+N+GI+F Sbjct: 476 PYFTDEKEAPAGGKIPGRFIKHDFNILGWRKVTLTAAVVAVVLVLAILGIRGINFGIEFV 535 Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 GG + V + +R + D Q + + ++ + + Sbjct: 536 GGTSVAFHNTGDVTIEQLRDAFDEAGETDAVIQTTETDGEPGFLVRTTTTSAEDANVAAK 595 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695 V +GP +I+ ++ ++S I ++IYI IRF+ + + Sbjct: 596 AVADTFGWETDSFE---VTTIGPDWGTSVIKSSVIAFLVSLILIIIYISIRFRDYKMGVT 652 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 AI L+ D+ G +AL G E +AAVLT++GYS+ D VVV+ + NMK + Sbjct: 653 AIVALLHDLILVFGIYALIGREVTPNTIAAVLTILGYSLYDTVVVFRSIDDNMKGDSIKC 712 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 +F + + S+N+ L RS+ TS+ + I VL M ++G + FA+ M G+V SS+ I Sbjct: 713 TFMSMANHSLNQVLIRSLNTSITSLIPVLFMLLFGAETLKDFALAMTIGLVSGCYSSLAI 772 Query: 816 AAPILLFIYDWRAKNARI 833 A P+ + AR+ Sbjct: 773 ATPLYAIWKTREPEFARL 790 >gi|92117344|ref|YP_577073.1| preprotein translocase subunit SecD [Nitrobacter hamburgensis X14] gi|91800238|gb|ABE62613.1| protein-export membrane protein SecD [Nitrobacter hamburgensis X14] Length = 533 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 200/529 (37%), Positives = 312/529 (58%), Gaps = 9/529 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + L A+PNF P++ + +P + + LGLDL+GGS+L+LEVD + Sbjct: 6 RWKALAIIVTALAICLCAVPNFFPEAQVKTWPKWA-QRHLVLGLDLQGGSYLLLEVDSNY 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L D+ R L+ I + + + + + K+ Q + Sbjct: 65 VKKEKLDQVRDDARKALRDARIAYTGLAAKNGVVEVRISKEEEFQTALGKLRELSQPLGG 124 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 L +++L + + I + + Q + I ++EQS++II +R++++G E IQR Sbjct: 125 LLGSTGQRSLEVSSADGGLIRMTVPQAAVTDRIRQSVEQSIQIIEKRVNELGTVEPLIQR 184 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237 G+ RIL+Q+PG QDP+RL+++LG TAKM F V + S + + G Sbjct: 185 QGTDRILVQVPGLQDPTRLKEILGKTAKMDFRMVDSSVSPEQALQGRVPADSEVLMSSQA 244 Query: 238 -GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y+V+ +V +SG L A FD +T +P+V F+ GAR+F + T +N+G+P A+ Sbjct: 245 PKTPYVVKKQVLVSGGDLTDAQPGFDSRTSEPIVTFRFNSNGARKFAQATSENVGQPFAI 304 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 +LD V++APVI + I G QISGNFT++ A LA +LRAG+LP L I+EER VG L Sbjct: 305 ILDNEVISAPVIREPITGGSGQISGNFTVQEANDLAILLRAGALPAPLTIIEERTVGPGL 364 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G DSI KG A G +++++FM++ Y +G+ A+ ++ +NV + +LSLL ATLTLP Sbjct: 365 GQDSIEKGELAAYVGSIMVIVFMLLTYRLFGVFANIAVAINVAMIFGVLSLLNATLTLPG 424 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL +G+AVDSN+L+ ERIREE R ++ ++D GF RA +TI DSNIT IA V Sbjct: 425 IAGIVLTVGIAVDSNVLIYERIREEVRGGRTAISAIDAGFKRALATILDSNITTFIAAAV 484 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF+ G G VRGFA+T+G+ I+ ++FTA + R ++ +R+K+ +++ I Sbjct: 485 LFYIGTGPVRGFAVTLGIGIITTVFTAFEVTRLIVATWVRWKRPQNVPI 533 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 82/174 (47%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I KG + + +I +++++ + ++ F + A + +++ G +L Sbjct: 361 GPGLGQDSIEKGELAAYVGSIMVIVFMLLTYRL-FGVFANIAVAINVAMIFGVLSLLNAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ T+IS ID L + +++ Sbjct: 420 LTLPGIAGIVLTVGIAVDSNVLIYERIREEVRGGRTAIS---AIDAGFKRALATILDSNI 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 FI+ + G + FA+ + GI+ ++ + I+ W+ Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFEVTRLIVATWVRWKRPQN 530 >gi|91977247|ref|YP_569906.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris BisB5] gi|91683703|gb|ABE40005.1| protein-export membrane protein SecD [Rhodopseudomonas palustris BisB5] Length = 533 Score = 259 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 199/529 (37%), Positives = 312/529 (58%), Gaps = 9/529 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + L A+PNF P+S + +P + + LGLDL+GGSH++LEVD + Sbjct: 6 RWKALAVILTALAVCLCAVPNFFPESTVKTWPKWA-QRHLVLGLDLQGGSHILLEVDANS 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L+ D+ R L++ I + Q + + + + K+ Q + Sbjct: 65 VKKDKLESVRDDARRVLREARIAYTGLAQKGDVVEVKISKDTEVPAALTKLRELSQPLGG 124 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 L + +++L + I + + I I +++QS++I+ +R++++G E IQR Sbjct: 125 LLGSNGQRSLEVSDAGGGVIRLAVPPAAIADRIRQSVDQSIQIVERRVNELGTVEPLIQR 184 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237 G+ RIL+Q+PG QDP+RL++LLG TAK+ F V + S G Sbjct: 185 QGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSADQAQQGRAPPDSDVLMSAQT 244 Query: 238 -GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y+++ ++ +SG L A FD +T +P+V F+ GAR+F T +N+G+P A+ Sbjct: 245 PKQPYVIKKQILVSGGDLTDAQPGFDSRTSEPIVSFRFNTSGARKFSRATTENVGQPFAI 304 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLD V++APVI + I G QISG+FT++ A LA +LRAG+LP L I+EER VG L Sbjct: 305 VLDNEVISAPVIREPITGGSGQISGSFTVQQANDLAILLRAGALPAPLTIIEERTVGPGL 364 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G DSI KG A G +L+++FM++ Y +G+ A+ ++ +NV + +LSLL ATLTLP Sbjct: 365 GQDSIEKGELAAYVGSILVIIFMLLTYRLFGVFANLAVAVNVAMIFGVLSLLNATLTLPG 424 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAG+VL +G+AVDSN+L+ ERIREE R ++ ++D GF RA STI DSNIT IA V Sbjct: 425 IAGVVLTVGIAVDSNVLIYERIREELRAGRNAISAIDAGFKRALSTILDSNITTFIAAAV 484 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++ +R+K+ +++ I Sbjct: 485 LFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQTVPI 533 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 81/173 (46%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I KG + + +I ++I++ + ++ F + A + +++ G +L Sbjct: 361 GPGLGQDSIEKGELAAYVGSILVIIFMLLTYRL-FGVFANLAVAVNVAMIFGVLSLLNAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A V+ +G +V+ V++Y+R+R+ ++ +IS ID L + +++ Sbjct: 420 LTLPGIAGVVLTVGIAVDSNVLIYERIREELRAGRNAIS---AIDAGFKRALSTILDSNI 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 FI+ + G + FA+ + GI+ ++ + I+ W+ Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQ 529 >gi|254469248|ref|ZP_05082653.1| protein-export membrane protein SecD [Pseudovibrio sp. JE062] gi|211961083|gb|EEA96278.1| protein-export membrane protein SecD [Pseudovibrio sp. JE062] Length = 534 Score = 259 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 205/529 (38%), Positives = 324/529 (61%), Gaps = 8/529 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + L ++ G+L LPNF P S + +P MPK +I LGLDL+GG++L+ EVD++D Sbjct: 6 RWKIALIIVVVLGGILTTLPNFFPASTVQSWPDFMPKRQIVLGLDLQGGAYLLYEVDKED 65 Query: 65 FVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 + + +R L++ IG + + + + D+ + ++ + +N Sbjct: 66 YKEKQFRQLVGNIRRALRENPRIGYTGLGIQGDGVQVRIRDAARYDEAERRLAELVNPLN 125 Query: 124 SKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S + + +L + + SQ +D ++ + QS+E+IR+R+D++G +E +I Sbjct: 126 SGVFGGAAVNEFVLEPQGDGLFRMAFSQEGLDMRLASVVRQSIEVIRRRVDELGTTEPSI 185 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-----FMFGVRFLRDS 236 QR G+ RIL++ PGE +P RL+ ++G TA+++FH V S G + + Sbjct: 186 QRQGTDRILVEAPGESNPQRLKDIIGATAQLTFHLVSQEMSASQALQGRPPNGTMVVEGN 245 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 DG YL+++ ++G L A+ FD +T++PVV+ F+ GAR F +VTR N+G+P A+ Sbjct: 246 DGQPYLLDETPLLTGEELQDASVAFDQQTNEPVVNFRFNTAGARVFADVTRANVGRPFAI 305 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLD V+TAPVI Q I G QISGNFT++ A LA +LRAG+LP +L++VEER+VG L Sbjct: 306 VLDDEVITAPVIRQPITGGSGQISGNFTVDGANDLAVLLRAGALPARLDVVEERSVGPGL 365 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G DSI G A + +V+FM++ YG++G++A+ ++ NV L +L+ L ATLTLP Sbjct: 366 GQDSIDSGKVASIVAAAAVVIFMLLAYGQFGVIANLALASNVFLIFGVLTTLQATLTLPG 425 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAG+VL IG+AVD+N+L+ ERIREE R +S S+D GFSRA TI D+NIT LI V+ Sbjct: 426 IAGVVLTIGMAVDANVLIYERIREEARAGRSAIGSIDAGFSRALGTILDANITTLIVAVI 485 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LFF G G V+GFA+T+ + I ++F+A ++ R ++ ++ K+ + I Sbjct: 486 LFFIGSGPVKGFAVTLMIGIFTTVFSAFTVSRFLISVWVKRKRPSKLPI 534 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 81/178 (45%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + ++ I G V I++A A++I++ + + F + A L ++ G Sbjct: 360 SVGPGLGQDSIDSGKVASIVAAAAVVIFMLLAYG-QFGVIANLALASNVFLIFGVLTTLQ 418 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A V+ IG +V+ V++Y+R+R+ + S ID + LG + Sbjct: 419 ATLTLPGIAGVVLTIGMAVDANVLIYERIREEARA---GRSAIGSIDAGFSRALGTILDA 475 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + + G + FA+ + GI S+ F + L+ ++ R + +++ Sbjct: 476 NITTLIVAVILFFIGSGPVKGFAVTLMIGIFTTVFSA-FTVSRFLISVWVKRKRPSKL 532 >gi|328543822|ref|YP_004303931.1| Protein translocase subunit secF / protein translocase subunit secD [polymorphum gilvum SL003B-26A1] gi|326413566|gb|ADZ70629.1| Protein translocase subunit secF / protein translocase subunit secD [Polymorphum gilvum SL003B-26A1] Length = 536 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 204/531 (38%), Positives = 322/531 (60%), Gaps = 10/531 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + L ++ G+ LPNF L +P +PK ++ LGLDL+GG++L+ EVD+ D Sbjct: 6 RWKIALIVLVILSGIASTLPNFFSAETLRSWPDWLPKRQMVLGLDLQGGAYLLYEVDKQD 65 Query: 65 FVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 ++ L E+R L+++ IG + + D + ++ + Sbjct: 66 YIQKSLTTLVGEIRRKLREDPRIGYTGLGVQGETAQVRIRDLERLSDAERRLRELENPLV 125 Query: 124 SKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S L + + + + I +++ +DQ ++ ++Q++E+IR+R+D++G +E +I Sbjct: 126 SSLFGGQPVNEFAMTVSADGLIRFAFTEDGLDQRMTSIVQQAIEVIRRRVDELGTTEPSI 185 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234 QR GS RIL++ PGEQDP RL+ L+G TA+++FH V + S + + G Sbjct: 186 QRQGSDRILVEAPGEQDPERLKGLIGQTAQLTFHMVDMSMSGEEALQGRPPAGTMVLYSV 245 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 D YL+E+ + G L A +FD +T++PVV+ F+ GAR+F +T+ N+G+P Sbjct: 246 DDPPIPYLLEESPLLGGEDLVDAQVSFDQRTNEPVVNFRFNTSGARKFSVITQQNVGRPF 305 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A+VLD V++APVI + I G QISG+FT+E A LA +LRAG+LP KL ++EER +G Sbjct: 306 AIVLDDEVISAPVIREPITGGSGQISGSFTVEGANDLAVLLRAGALPAKLTVLEERAIGP 365 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG+DS+ G A + G +++FM++ YG++GL+AD ++ N++L L+ L ATLTL Sbjct: 366 GLGADSVEAGKIASLIGTAAVIVFMVLAYGRFGLIADIALLSNIMLIFGALTFLQATLTL 425 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL IG+AVD+N+L+ ERIREE R +S ++D GFSRA STI D+NIT LIA Sbjct: 426 PGIAGIVLTIGMAVDANVLIFERIREEVRAGRSAISAIDAGFSRAISTILDANITTLIAA 485 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 ++LF G G VRGFA+T+ + I ++FTA + R M+ +RY++ + I Sbjct: 486 LILFQLGSGPVRGFAVTLAIGIFTTVFTAFTFTRLMVALWVRYRRPTRLPI 536 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 68/150 (45%), Gaps = 4/150 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + + G + +I A+++++ + + F L A L+ +I G Sbjct: 362 AIGPGLGADSVEAGKIASLIGTAAVIVFMVLAYG-RFGLIADIALLSNIMLIFGALTFLQ 420 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++++R+R+ ++ S ID + + + Sbjct: 421 ATLTLPGIAGIVLTIGMAVDANVLIFERIREEVRA---GRSAISAIDAGFSRAISTILDA 477 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 ++ I+ L + G + FA+ +A GI Sbjct: 478 NITTLIAALILFQLGSGPVRGFAVTLAIGI 507 >gi|118589130|ref|ZP_01546537.1| protein-export membrane protein SECD [Stappia aggregata IAM 12614] gi|118438459|gb|EAV45093.1| protein-export membrane protein SECD [Stappia aggregata IAM 12614] Length = 536 Score = 258 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 202/531 (38%), Positives = 330/531 (62%), Gaps = 10/531 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + L ++ G+L LPNF Q L+ +P +PKN++ LGLDL+GG++L+ E+D+ D Sbjct: 6 RWKIGLIVLVVAAGILTTLPNFFSQKQLESWPDFLPKNQMVLGLDLQGGAYLLYEIDKQD 65 Query: 65 FVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 ++ ++ ++R+ L+++ IG + + + D + +++ + + Sbjct: 66 YIQKRMRALVGDIRTTLREDPRIGYTGLGVQGDAAQVRIRDLTRLADAQERLQPLVNPLV 125 Query: 124 SKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S + + + T + I S+ ++ +++ ++QS+E+IR+R+D+IG +E +I Sbjct: 126 SSVFGGQAVNEFDMTATEDGLIRFSYSEQGLEDRMTNIVQQSIEVIRRRVDEIGTTEPSI 185 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234 QR G+ RIL++ PGE DP RL+ L+G TA+++FH V + S + + Sbjct: 186 QRQGADRILVEAPGEDDPERLKDLVGQTAQLTFHMVDTSMSGEQALQNRPPAGTVIMMSV 245 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 D YL+E+ +SG L A +FD +T++PVV+ F++ GAR+F ++T+ N+ +P Sbjct: 246 DDPPIPYLLEEAPLLSGEDLVDAQVSFDQRTNEPVVNFRFNQSGARKFAQITQQNVNRPF 305 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A+VLD V++APVI + I G QISGNFT++ A LA +LRAG+LP KL ++EER++G Sbjct: 306 AIVLDEEVISAPVIREPITGGSGQISGNFTVDGANDLAVLLRAGALPAKLTVIEERSIGP 365 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG+DSI G A V G L+++FMI+ YG++G++AD ++ N+ L L+LL ATLTL Sbjct: 366 GLGADSIEAGKLASVIGGGLVIIFMILAYGRFGIIADIALMANIFLIFGALTLLQATLTL 425 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL IG+AVD+N+L+ ERIREE R +S ++D GFSRA TI D+NIT LIA Sbjct: 426 PGIAGIVLTIGMAVDANVLIFERIREEARAGRSAISAVDAGFSRALGTILDANITTLIAA 485 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+LF G G V+GFA+T+ + I ++F+A + R ++ +R ++ + I Sbjct: 486 VILFQLGSGPVKGFAVTLAIGIFTTVFSAFTFSRLLVALWLRRRRPSKLPI 536 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 82/178 (46%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G + +I ++I++ + + F + A L+ +I G L Sbjct: 362 SIGPGLGADSIEAGKLASVIGGGLVIIFMILAYG-RFGIIADIALMANIFLIFGALTLLQ 420 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++++R+R+ + S +D + LG + Sbjct: 421 ATLTLPGIAGIVLTIGMAVDANVLIFERIREEARA---GRSAISAVDAGFSRALGTILDA 477 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I+ + + G + FA+ +A GI S+ F + +L+ ++ R + +++ Sbjct: 478 NITTLIAAVILFQLGSGPVKGFAVTLAIGIFTTVFSA-FTFSRLLVALWLRRRRPSKL 534 >gi|85716184|ref|ZP_01047159.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A] gi|85697017|gb|EAQ34900.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A] Length = 533 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 200/529 (37%), Positives = 309/529 (58%), Gaps = 9/529 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + L A+PNF P++ + +P + + LGLDL+GGS+L+LEVD + Sbjct: 6 RWKALAIIVTALAICLCAVPNFFPEAQVKTWPKWA-QRHLVLGLDLQGGSYLLLEVDSNY 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L D+ R L+ I + + + + + K+ Q + Sbjct: 65 VKKEKLDQVRDDARKTLRDARIAYTGLAIKNGAVEVRISKEEEFQTALGKLRELSQPLGG 124 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 L +++L + + + + + Q + I ++EQS++II +R++++G E IQR Sbjct: 125 LLGSSGQRSLEVSSADGGLVRMAVPQTAVTDRIRQSVEQSIQIIERRVNELGTVEPLIQR 184 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237 G+ RIL+Q+PG QDP+RL+++LG TAKM F V + S G Sbjct: 185 QGADRILVQVPGLQDPTRLKEILGKTAKMDFRMVDSSVSPDQAAQGQVPADSEVLMSSQA 244 Query: 238 -GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y+V +V +SG L A FD +T +P+V F+ GAR+F + T +N+G+P A+ Sbjct: 245 PKTPYVVRKQVLVSGGDLTDAQPGFDSRTSEPIVTFRFNSNGARKFAQATTENVGQPFAI 304 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 +LD V++APVI + I G QISGNFT++ A LA +LRAG+LP L I+EER VG L Sbjct: 305 ILDNEVISAPVIREPITGGSGQISGNFTVQEANDLAILLRAGALPAPLTIIEERTVGPGL 364 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G DSI KG A G ++++LFM++ Y +G+ A+ ++ +NV + +LSLL ATLTLP Sbjct: 365 GQDSIEKGELAAYVGSIMVILFMLLTYRLFGVFANIAVAINVAMIFGVLSLLNATLTLPG 424 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL +G+AVDSN+L+ ERIREE R ++ ++D GF RA +TI DSNIT IA V Sbjct: 425 IAGIVLTVGIAVDSNVLIYERIREEIRAGRTAISAIDAGFKRALATILDSNITTFIAAAV 484 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF+ G G VRGFA+T+G+ I+ ++FTA + R ++ +R+K+ +++ I Sbjct: 485 LFYIGTGPVRGFAVTLGIGIMTTVFTAFEVTRLIVATWVRWKRPQTVPI 533 Score = 141 bits (354), Expect = 6e-31, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 82/173 (47%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I KG + + +I +++++ + ++ F + A + +++ G +L Sbjct: 361 GPGLGQDSIEKGELAAYVGSIMVILFMLLTYRL-FGVFANIAVAINVAMIFGVLSLLNAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ T+IS ID L + +++ Sbjct: 420 LTLPGIAGIVLTVGIAVDSNVLIYERIREEIRAGRTAIS---AIDAGFKRALATILDSNI 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 FI+ + G + FA+ + GI+ ++ + I+ W+ Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGIMTTVFTAFEVTRLIVATWVRWKRPQ 529 >gi|86749849|ref|YP_486345.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris HaA2] gi|86572877|gb|ABD07434.1| protein-export membrane protein SecD [Rhodopseudomonas palustris HaA2] Length = 533 Score = 257 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 199/529 (37%), Positives = 313/529 (59%), Gaps = 9/529 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + L A+PNF P + +P + + LGLDL+GGSH++LEVD + Sbjct: 6 RWKALAVIVTALAVCLCAVPNFFPDHTVKTWPKWA-QRHLVLGLDLQGGSHILLEVDANS 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L D+ R L++ I + +++ + + K+ Q + Sbjct: 65 VRKDKLDSVRDDARRVLREARIAYTGLATKGDQVEVRISKENEVPTALTKLRELSQPLGG 124 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 L + +++L + I + + Q I + + +++QS++I+ +R++++G E IQR Sbjct: 125 LLGSNGQRSLDVTDAGGGLIRLTVPQAAIAERVRQSVDQSIQIVERRVNELGTVEPLIQR 184 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------RDS 236 G+ RIL+Q+PG QDP+RL++LLG TAK+ F V + S + G S Sbjct: 185 QGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSPEQAQAGRAPSDSDVLMSSSS 244 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y+++ +V +SG L A FD +T +P+V F+ GAR+F T +N+G+P A+ Sbjct: 245 PKQPYVIKKQVLVSGADLTDAQPGFDQRTSEPIVSFRFNTNGARKFARATTENVGQPFAI 304 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLD V++APVI + I G QISG+FT++ A LA +LRAG+LP L I+EER VG L Sbjct: 305 VLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPGL 364 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G DSI KG A G +L+++FM++ Y +G+ A+ ++ +NV + +LSLL ATLTLP Sbjct: 365 GQDSIEKGELAAYVGSILVIIFMLLTYRLFGVFANIAVAVNVAMIFGVLSLLNATLTLPG 424 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAG+VL +G+AVDSN+L+ ERIREE R ++ ++D GF RA STI DSNIT IA V Sbjct: 425 IAGVVLTVGIAVDSNVLIYERIREELRAGRNAISAIDAGFKRALSTILDSNITTFIAAAV 484 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++ +R+K+ +++ I Sbjct: 485 LFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQTVPI 533 Score = 137 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 81/173 (46%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I KG + + +I ++I++ + ++ F + A + +++ G +L Sbjct: 361 GPGLGQDSIEKGELAAYVGSILVIIFMLLTYRL-FGVFANIAVAVNVAMIFGVLSLLNAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A V+ +G +V+ V++Y+R+R+ ++ +IS ID L + +++ Sbjct: 420 LTLPGIAGVVLTVGIAVDSNVLIYERIREELRAGRNAIS---AIDAGFKRALSTILDSNI 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 FI+ + G + FA+ + GI+ ++ + I+ W+ Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQ 529 >gi|27379846|ref|NP_771375.1| preprotein translocase subunit SecD [Bradyrhizobium japonicum USDA 110] gi|27352999|dbj|BAC50000.1| protein-export membrane protein [Bradyrhizobium japonicum USDA 110] Length = 534 Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 207/530 (39%), Positives = 317/530 (59%), Gaps = 10/530 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + I L A+PNF P++ + +P+ + R+ LGLDL+GGS+L+LEVD + Sbjct: 6 RWRALGIILTALIVCLCAVPNFFPEAQVKTWPAWA-QRRLVLGLDLQGGSYLLLEVDSNY 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 L D++R L+ IG + + + + K+ Q + Sbjct: 65 VKKERLDQVRDDVRRTLRDAKIGFTGGVTVRNDAAEVRITKETDVQPALAKLRELAQPLG 124 Query: 124 SKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + +++L + I + + Q + + IEQS++I+ +R++++G E IQ Sbjct: 125 GLMGSSGQRDLEVTDAGGGVIRLSIPQAAMLDRMRKTIEQSIQIVERRVNELGTVEPVIQ 184 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------ 236 R G+ RIL+Q+PG QDP+RL++LLG TAKM F V + G Sbjct: 185 RQGNDRILVQVPGLQDPTRLKELLGKTAKMEFRMVDTSVPPDQAQQGRLPPESDLLMSAS 244 Query: 237 -DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 Y+V+ +V ++G L A A+FD +T +PVV F+ GAR+F + T++N+G P A Sbjct: 245 PPPTPYVVKKQVLVAGGDLTDAQASFDQRTGEPVVSFKFNTSGARKFSQATQENVGLPFA 304 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLD +V++APVI + I G+ QISGNFT+++A LA +LRAG+LP L +VEER VG Sbjct: 305 IVLDNKVISAPVIREPITGGQGQISGNFTVQSANDLAILLRAGALPAPLTVVEERTVGPG 364 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG DSI KG A G +L+++FM+V Y +G+ A+ ++ +NV + LLSLL ATLTLP Sbjct: 365 LGQDSIEKGELAAYVGSILVIIFMLVTYRLFGVFANIAVAINVAMIFGLLSLLNATLTLP 424 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL +G+AVDSN+L+ ERIREE R ++ ++D GF RA +TI DSNIT IA Sbjct: 425 GIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFIAAA 484 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 VLF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++ +R+K+ +S+ I Sbjct: 485 VLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVAGWVRWKRPQSVPI 534 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 82/174 (47%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I KG + + +I ++I++ + ++ F + A + +++ G +L Sbjct: 362 GPGLGQDSIEKGELAAYVGSILVIIFMLVTYRL-FGVFANIAVAINVAMIFGLLSLLNAT 420 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ +IS ID L + +++ Sbjct: 421 LTLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAIS---AIDAGFKRALATILDSNI 477 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 FI+ + G + FA+ + GI+ ++ + I+ W+ + Sbjct: 478 TTFIAAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVAGWVRWKRPQS 531 >gi|299134929|ref|ZP_07028120.1| protein-export membrane protein SecD [Afipia sp. 1NLS2] gi|298589906|gb|EFI50110.1| protein-export membrane protein SecD [Afipia sp. 1NLS2] Length = 532 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 207/529 (39%), Positives = 311/529 (58%), Gaps = 10/529 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + I L A+PNF P++ + +P+ + R+ LGLDL+GGSHL+LEVD + Sbjct: 6 RWKALAVIFTALIVCLCAVPNFFPEATVKTWPAWA-QRRLVLGLDLQGGSHLLLEVDANS 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L D+ R L++ IG + + + + K+ Q + Sbjct: 65 VKKDKLDQVRDDARRTLREAKIGYTGLSIKGDNVEVRVK-EADLATALTKLRELSQPIGG 123 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 L ++ L + I + + Q I + A++QS++II +R++++G E IQR Sbjct: 124 VLGGTGQRTLEVSDAGGGLIRLTVPQAAILDRVRQAVDQSIQIIEKRVNELGTVEPLIQR 183 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG----- 238 G R+L+Q+PG QDP+RL+++LG TAKM F V S + + G Sbjct: 184 QGVDRVLVQVPGLQDPTRLKEILGKTAKMDFRMVDTTVSPEQALQGRVPPDSEVLKGAEP 243 Query: 239 --NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y+V+ +V +SG L A +FD +T +PVV F+ GAR+F + T +N+ +P A+ Sbjct: 244 PHAPYVVKKQVLVSGADLTDAQPSFDQRTGQPVVSFRFNGTGARKFAQATTENVKQPFAI 303 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLD V++APVI + I G QISGNFT++ A LA +LRAG+LP L I+EER VG L Sbjct: 304 VLDNEVISAPVIQEPITGGSGQISGNFTVQQANDLAILLRAGALPAPLTIIEERTVGPGL 363 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G DSI G A G VL+++FM + Y +GL A+ ++ +NV + +LSLL ATLTLP Sbjct: 364 GQDSIAAGELASYVGSVLVIVFMTLTYRLFGLFANIAVAVNVAMIFGILSLLNATLTLPG 423 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL +G+AVDSN+L+ ERIREE R ++ ++D GFSRA +TI DSNIT IA V Sbjct: 424 IAGIVLTVGIAVDSNVLIYERIREEVRHGRNAISAIDAGFSRALATILDSNITTFIAAAV 483 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++ +R+K+ +++ I Sbjct: 484 LFYIGTGPVRGFAVTLGIGIVTTVFTAFTVTRLIVATWVRWKRPQTVPI 532 Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 79/173 (45%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I G + + ++ +++++ + ++ F L A + +++ G +L Sbjct: 360 GPGLGQDSIAAGELASYVGSVLVIVFMTLTYRL-FGLFANIAVAVNVAMIFGILSLLNAT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ + ID + L + +++ Sbjct: 419 LTLPGIAGIVLTVGIAVDSNVLIYERIREEVR---HGRNAISAIDAGFSRALATILDSNI 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 FI+ + G + FA+ + GIV ++ + I+ W+ Sbjct: 476 TTFIAAAVLFYIGTGPVRGFAVTLGIGIVTTVFTAFTVTRLIVATWVRWKRPQ 528 >gi|297207643|ref|ZP_06924078.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887660|gb|EFH26558.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 545 Score = 255 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 151/518 (29%), Positives = 264/518 (50%), Gaps = 22/518 (4%) Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 +A +L AGSLP+ L + +VGA G D++ K A G+ LI LFM+ Y GLV Sbjct: 14 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 73 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A ++ + LTL + + LTLP +A +VLG+G+AVD+NI++ ERI++E R +++ Sbjct: 74 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 133 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 + ++ TIFDSN+T +IA VLFFFG +V+GFA + L IL+ TA+ + R Sbjct: 134 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 193 Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 + K + + L F++ +G+SIL Sbjct: 194 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 253 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + + +L+ LN GIDF G ++ + + + V ++ + Q + Sbjct: 254 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 313 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 ++ + +K K + V P I +EL + ++ +I + Sbjct: 314 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 367 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +I ++IY+ +RF+W L ++ L+ D+ + F+LF IE +LT +AAVLT++GYS+ND Sbjct: 368 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 427 Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 +V +DR+R+N++ TT+ D++++SI +T+ RS+ T + + V+ + +G Sbjct: 428 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 487 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I +F + + G++ SSIFIA P+ + + K + Sbjct: 488 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 525 >gi|209885375|ref|YP_002289232.1| protein-export membrane protein SecD [Oligotropha carboxidovorans OM5] gi|209873571|gb|ACI93367.1| protein-export membrane protein SecD [Oligotropha carboxidovorans OM5] Length = 532 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 201/529 (37%), Positives = 312/529 (58%), Gaps = 10/529 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + + L A+PNF ++ + +P+ + R+ LGLDL+GGSHL+LEVD Sbjct: 6 RWRALAVILTALVVCLCAVPNFFSEATVKTWPNWA-QRRLVLGLDLQGGSHLLLEVDAKS 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 L+ D++R L++ +G + + + + K+ Q + Sbjct: 65 VKKDKLEQVRDDVRRALREAKLGYTGLGIKGDNVEVRVK-EADLPTALSKLRELSQPIGG 123 Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 L ++ + + I + + Q I + A++QS++II +R++++G E IQR Sbjct: 124 ILGSSGQRTVDVTDLGGGLIRLAVPQAAILDRVRQAVDQSIQIIEKRVNELGTVEPLIQR 183 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------- 236 G R+L+Q+PG QDP+RL+++LG TAKM F V + S + G Sbjct: 184 QGMDRVLVQVPGLQDPTRLKEILGKTAKMDFRMVDTSISPEQAQQGRVPPDSELLKGSEP 243 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y+++ +V +SG L A +FD +T +PVV F+ GAR+F + T +N+ +P A+ Sbjct: 244 PHVPYVIKKQVLVSGADLTDAQPSFDQRTGQPVVSFRFNGTGARKFAQATTENVKQPFAI 303 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLD V++APVI + I G QISGNFT++ A LA +LRAG+LP L I+EER VG L Sbjct: 304 VLDNEVISAPVIQEPITGGSGQISGNFTVQQANDLAILLRAGALPAPLTIIEERTVGPGL 363 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G DSI G A G VL+++FM + Y +GL A+ ++ +NV + +LSLL ATLTLP Sbjct: 364 GQDSIAAGELASYVGSVLVIVFMTLTYRLFGLFANIAVAINVAMIFGVLSLLNATLTLPG 423 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL +G+AVDSN+LV ERIREE R ++ ++D GF+RA +TI D+NIT IA V Sbjct: 424 IAGIVLTVGIAVDSNVLVYERIREELRHGRNAISAIDAGFARALATILDANITTFIAAAV 483 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++ +R+K+ +++ I Sbjct: 484 LFYIGSGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQTVPI 532 Score = 134 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 77/173 (44%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I G + + ++ +++++ + ++ F L A + +++ G +L Sbjct: 360 GPGLGQDSIAAGELASYVGSVLVIVFMTLTYRL-FGLFANIAVAINVAMIFGVLSLLNAT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V+VY+R+R+ ++ + ID L + ++ Sbjct: 419 LTLPGIAGIVLTVGIAVDSNVLVYERIREELR---HGRNAISAIDAGFARALATILDANI 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 FI+ + G + FA+ + GI+ ++ + I+ W+ Sbjct: 476 TTFIAAAVLFYIGSGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQ 528 >gi|254418242|ref|ZP_05031966.1| protein-export membrane protein SecD [Brevundimonas sp. BAL3] gi|196184419|gb|EDX79395.1| protein-export membrane protein SecD [Brevundimonas sp. BAL3] Length = 530 Score = 253 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 188/528 (35%), Positives = 304/528 (57%), Gaps = 10/528 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W VIL +G L+A PN L + + P +PKN ++LGLDL+GGS+L+LEVD Sbjct: 5 SRWKVILVVASAILGCLLAFPNLLSSAQREALPGWLPKNALNLGLDLQGGSYLLLEVDVP 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 + +++R L EGI ++ + ++ A+ + + + Q Sbjct: 65 AMREKRVTNLIEDVRVTLNGEGIATNGFQREAGGVIVTLANPGQQTAAFEALR---QLAG 121 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + I + + + + A++QS+E++R+RID +G E +I R Sbjct: 122 AAGPSGQVERTATRVGGDRIRFAYTDTALAGMGATAVDQSIEVVRRRIDSLGTREPSITR 181 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDG 238 G+ RI++Q PGE DP +L +++G TA+++F V NS M G D G Sbjct: 182 QGADRIVVQAPGESDPRKLEEVIGQTAQLTFQMVDSENSVTDAMAGRVPPDAELLVDEQG 241 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 YLV+ +V +SG +L ++ +P +D FD GARRF E T N+GKP A++L Sbjct: 242 TPYLVKKRVLVSGENLTR-AGVGADQSGRPAIDFRFDAAGARRFGEATAANLGKPFAIIL 300 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 DG+V++AP I AI +G QI+G+F+I+ A L +L G+LP LN+ E R V A+LG+ Sbjct: 301 DGKVISAPTIQSAITTGSGQITGSFSIQEAATLVNLLNGGALPAPLNVEERRTVTAELGA 360 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 D++ G + G +IV+FMI+ YG +G V+ + LN +L +A +SL ATLTLP I Sbjct: 361 DAVAAGALSTAVGFAIIVVFMILAYGFLFGGVSVIGLVLNGVLIVAAMSLTQATLTLPGI 420 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG++L +AVD+N+L+ ER+R+E R +SV S+D GFS+A+ TI D+N+T L+A ++ Sbjct: 421 AGLILTFAVAVDANVLIYERMRDEARSGRSVIASMDAGFSKAWGTILDANVTTLVAAAIM 480 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 F FG G VRGFA T+ + + S+F+++ + + ++ + ++ K K + I Sbjct: 481 FVFGAGPVRGFAWTLSIGVFTSVFSSVLVAQVLLAYWLKTAKPKKLPI 528 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 74/173 (42%), Gaps = 3/173 (1%) Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 ++ + + G + + +++++ + + + F ++ L+L+ + +L Sbjct: 356 AELGADAVAAGALSTAVGFAIIVVFMILAYGFLFGGVSVIGLVLNGVLIVAAMSLTQATL 415 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 L +A ++ +V+ V++Y+RMR + + S +D ++ G + ++ Sbjct: 416 TLPGIAGLILTFAVAVDANVLIYERMRDEAR---SGRSVIASMDAGFSKAWGTILDANVT 472 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ M V+G + FA ++ G+ + SS+ +A +L + Sbjct: 473 TLVAAAIMFVFGAGPVRGFAWTLSIGVFTSVFSSVLVAQVLLAYWLKTAKPKK 525 >gi|76789183|ref|YP_328269.1| hypothetical protein CTA_0489 [Chlamydia trachomatis A/HAR-13] gi|76167713|gb|AAX50721.1| SecF [Chlamydia trachomatis A/HAR-13] Length = 564 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 146/560 (26%), Positives = 278/560 (49%), Gaps = 35/560 (6%) Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + A +SGNF+ LAA L++G++ I+ E V +LGS Sbjct: 8 YVISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQR 67 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 +G ++V GLV++++ M V Y G++A ++ LN++L A + L A LTL +AGI+ Sbjct: 68 VQGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGII 127 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+LV ERIREE +S+ S++ G+ +A+S IFDSN+T ++A+ +L Sbjct: 128 LAMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLD 187 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541 G ++GFA+T+ + I SMFTA+ + + + ++ K+ + I Sbjct: 188 TGPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFL 243 Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRS 596 R W V +L C +G+DFKGG L + ++ SV+R Sbjct: 244 KECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSHVCEYNPEQMCSVLRK 303 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--------- 647 + + + ++ + + V++ ++ ++ Sbjct: 304 RFQQIGLSSRDYRVRRADSSEKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLS 363 Query: 648 -----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 ++ + V ++S ++ + ++ + + +L+Y+ +RF+W +A A Sbjct: 364 DSGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSA 423 Query: 697 ITTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 I L+ D+ T F L I+ +L A+ A++T++GYS+N+ ++++DR+R++ + Sbjct: 424 ICALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREK 483 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811 + LI+ ++ +TLGR+V T+ ++ + GG I +FA M GI++ S Sbjct: 484 LFT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLS 542 Query: 812 SIFIAAPILLFIYDWRAKNA 831 S++IA P+LLF+ +N+ Sbjct: 543 SLYIAPPLLLFMVRKEEQNS 562 >gi|323137257|ref|ZP_08072336.1| protein-export membrane protein SecD [Methylocystis sp. ATCC 49242] gi|322397615|gb|EFY00138.1| protein-export membrane protein SecD [Methylocystis sp. ATCC 49242] Length = 530 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 202/531 (38%), Positives = 314/531 (59%), Gaps = 8/531 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF----PSAMPKNRISLGLDLRGGSHL 56 +R + W I + +L+ P+ L S + PS + +I LGLDL+GGSH+ Sbjct: 2 LRFSTWKFIAIVAMTLAAVLVVAPSMLSPSNYEALKSRLPSWLEPPKIVLGLDLQGGSHV 61 Query: 57 VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKV 115 +LEVD D ++ ++ D++R L++E + + + + + AD+ +E + K Sbjct: 62 MLEVDRPDVMSTLVRNLRDDVRRILREEKVAITGGIGATARGVQVRIADAADREKVLPKF 121 Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 +S+L P + + + I I ++ + + A++QS+E+IR+R+D +G Sbjct: 122 RQLRNSFSSRLVGGPSPLDVEESADGLIRITVTDVGVTDKLRRAVDQSIEVIRRRVDALG 181 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235 E++IQR G RIL+Q+PG QDP +L+ +LG TAK+ F V + + Sbjct: 182 TREASIQRQGDDRILVQVPGLQDPEQLKTILGQTAKLEFRLVAEPGQNPAETEELE--QT 239 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTH-KPVVDISFDEMGARRFFEVTRDNIGKPL 294 + +E +V + G L A FD + +PVV+ F+ GA++F EVT N+G+ Sbjct: 240 DQEGKIAIEKQVMVQGEDLTDAQPGFDQQRSGEPVVNFRFNIRGAQKFGEVTSKNVGRLF 299 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A+VLD +V++AP I I G QISG+FT+E A L+ +LRAG+LP KLNIVEER VG Sbjct: 300 AIVLDNKVISAPRILTPITGGSGQISGHFTVEQANNLSILLRAGALPAKLNIVEERTVGP 359 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG DSI G A G L+V++M++ YG +G+ A+ ++F+++ A L LLG+TLTL Sbjct: 360 GLGQDSIDAGKRAAYVGAGLVVVYMLITYGVFGVFANLALFVHIAFIFAGLVLLGSTLTL 419 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL IG+AVDSN+L+ ERIREEN +S+ SLD GF+RA++TI DSN+T +A Sbjct: 420 PGIAGIVLTIGMAVDSNVLIYERIREENHAGRSILASLDAGFNRAFATIVDSNVTMFVAA 479 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +L+F G G VRGFA+++ L IL ++ TA+++ R M+ Y + + I Sbjct: 480 AILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMIAVWYHYARPTKLPI 530 Score = 125 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I G + A +++Y+ I + F + A L + I L G Sbjct: 358 GPGLGQDSIDAGKRAAYVGAGLVVVYMLITYGV-FGVFANLALFVHIAFIFAGLVLLGST 416 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+R+R+ S +D N V +++ Sbjct: 417 LTLPGIAGIVLTIGMAVDSNVLIYERIREENHA---GRSILASLDAGFNRAFATIVDSNV 473 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F++ + G + FA+ +A GI+ +++ + ++ Y + Sbjct: 474 TMFVAAAILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMIAVWYHYARPTK 527 >gi|312113469|ref|YP_004011065.1| protein-export membrane protein SecF [Rhodomicrobium vannielii ATCC 17100] gi|311218598|gb|ADP69966.1| protein-export membrane protein SecF [Rhodomicrobium vannielii ATCC 17100] Length = 376 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 173/299 (57%), Gaps = 4/299 (1%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 F +P F++ +SI+ + ++ LLF GLN+GIDFKGG + V Sbjct: 4 KPLFRLPQKTNFHFVKYFKVCFALSIIGIVGTVVLLFIQGLNFGIDFKGGTLMQVQTPTA 63 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + + +R+ L + +G+I QNF + L+R Q G AQ + V + + Sbjct: 64 AEAAKLRTTLTEIGVGEIQIQNFGKDDELLIRFPEQEGGPEAQKVAADKVLAALPQGTKE 123 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 E VG +S+ELI I ++++ + + Y+W RF+W FALGAI L+ D+ T+ Sbjct: 124 ---LRREQVGSTVSKELINSAIWALVLANLGIFAYVWFRFEWQFALGAIIALVHDVMITI 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G ++LFG++F+LT VAA+LT++GYS+ND VV+YDR+R+N++ Y + L+D S+NET Sbjct: 181 GLWSLFGLDFDLTIVAALLTILGYSINDTVVIYDRIRENLRRY-KKMPLPQLLDLSVNET 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + R++ T ++++P+ ++GG VI F M FG ++ SS++IAAP L+ I R Sbjct: 240 MSRTIMTVATVLMALIPLYIFGGEVIRGFTFAMIFGTLIGTYSSVYIAAPFLILIGVKR 298 Score = 37.7 bits (85), Expect = 8.8, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 42/105 (40%), Gaps = 10/105 (9%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKIT 99 ++ G+D +GG+ +++V + +LR+ L + G+G ++ +++ Sbjct: 42 QGLNFGIDFKGGT--LMQVQTPTAAE------AAKLRTTLTEIGVGEIQIQNFGKDDELL 93 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144 + F + + + + ++ + +T KE+ Sbjct: 94 IRFPEQEGGPEAQKVAADKVLAALPQGTKELRREQVGSTVSKELI 138 >gi|256375215|ref|YP_003098875.1| bifunctional preprotein translocase subunit SecD/SecF [Actinosynnema mirum DSM 43827] gi|255919518|gb|ACU35029.1| protein-export membrane protein SecD [Actinosynnema mirum DSM 43827] Length = 753 Score = 249 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 191/690 (27%), Positives = 329/690 (47%), Gaps = 13/690 (1%) Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + D S A +++ME++R+R+D++G++E + R G RI+++LPG QDP+ ++ Sbjct: 44 QIVLETPDGSASEATDRAMEVLRRRVDELGVAEPVLARSGDRRIVVELPGVQDPAEAVEV 103 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--GNQYLVEDKVEISGIHLNGATANFDP 263 LG TA++S H V L D+ G+ G F Sbjct: 104 LGRTAQLSVHPVTGAGGTPSPAGIGIALGDTVMTGDGIKNAQASPAQGGIGWTVGIEFQG 163 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 +S + A + V+ +V + + G QI+G+F Sbjct: 164 DAPAAWQRVSAEAACAPPGDPRRQIAFRLDDEVISSPQVDPSVGCGTGMIGGSTQITGSF 223 Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383 T + A LA ++R+G+LP+ +++VE+R VG LG+++I A + G+ L LF+I +Y Sbjct: 224 TQDEAEDLALVIRSGALPVPVDVVEQRTVGPTLGAEAIDASARAAIIGVALTGLFLIGVY 283 Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 GLVA ++ ++ A L +GATLTLP +AG VL +G+AVD+N+LV ER REE Sbjct: 284 RLAGLVAVLALVAYAAVSYAALLAIGATLTLPGLAGFVLAVGMAVDANVLVFERAREEFA 343 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + + + S+D+GF A+S + DSN T L+A +LF+ G V+GF +T+ + ++ S+F+A Sbjct: 344 RRRRMPRSVDLGFRGAFSAVADSNATTLLAAGLLFWLAVGPVKGFGVTLSIGVVASLFSA 403 Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA--IQFMRARFWGVGISILFSICSI 561 + + R ++ I+ + + + I R + + L ++ ++ Sbjct: 404 LVLSRVLLQLIMPVLERRPRWSGLHDLGRVRTWLTGRGIVLFRRPTRWLVAAALIAVAAL 463 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 L GL+ G++F GG L A VD VR L D Sbjct: 464 SGLAVRGLDLGVEFTGGRMLEFTAAS-VDTGRVRDALADAGFPDAVVATSGDSG------ 516 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 V + + + E++GP + EL R ++ + I+ A L Sbjct: 517 -VSVRTGPIDEAASARVGEAVDRATGGAEQVANELIGPSLGDELRRNALIALAIAVAAQL 575 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 Y+ RF W L ++ L+ D+ +G FA G + +A++LT+IGYSVND VVV+ Sbjct: 576 AYLAYRFDWRLGLATVSALVADVVVLVGAFAWMGKTADGVFLASLLTVIGYSVNDSVVVF 635 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 DR+R+ ++ + +L+ ++ +T+ R+V T + + + V G + FA + Sbjct: 636 DRVRE-LRRADPRRDYPELVGSAVLQTIPRTVNTGIGVLFVLAALLVLGDGSLADFATAL 694 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G+V +S+I AAPI + + NA Sbjct: 695 LIGLVAGTASTIVTAAPIAIALDGRWGPNA 724 Score = 82.8 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 68/219 (31%), Gaps = 4/219 (1%) Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 + G + + + + VGP + E I Sbjct: 209 GTGMIGGSTQITGSFTQDEAEDLALVIRSGALPVPVDVVEQRTVGPTLGAEAIDASARAA 268 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 II +++ ++ + + + A+ G L +A + +G + Sbjct: 269 IIGVALTGLFLIGVYRLAGLVAVLALVAYAAVSYAALLAI-GATLTLPGLAGFVLAVGMA 327 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 V+ V+V++ + + + +D ++ ++ + Sbjct: 328 VDANVLVFE---RAREEFARRRRMPRSVDLGFRGAFSAVADSNATTLLAAGLLFWLAVGP 384 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + F + ++ G+V + S++ ++ +L I + R Sbjct: 385 VKGFGVTLSIGVVASLFSALVLSRVLLQLIMPVLERRPR 423 Score = 71.3 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 71/251 (28%), Gaps = 19/251 (7%) Query: 1 MRNNPWLV-ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M +L + +G+L A + LGLDLRGG+ +VLE Sbjct: 1 MPRPAARRELLVRGLLSLGVLAASAFL------------LLTTAPRLGLDLRGGTQIVLE 48 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118 D + + LR + + G+ + + + +I + + + + Sbjct: 49 -TPDGSASEATDRAMEVLRRRVDELGVAEPVLARSGDRRIVVELPGVQDPAEAVEVLGRT 107 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 Q + V++ + I + + I + Sbjct: 108 AQLSVHPVTGAGGTPSPAGIGIALGDTVMTGDGIKNAQASPAQGG--IGWTVGIEFQGDA 165 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + S PG DP R +S +V P+ M G Sbjct: 166 PAAWQRVSAEAACAPPG--DPRRQIAFRLDDEVISSPQVDPSVGCGTGMIGGSTQITGSF 223 Query: 239 NQYLVEDKVEI 249 Q ED + Sbjct: 224 TQDEAEDLALV 234 >gi|182677987|ref|YP_001832133.1| protein-export membrane protein SecD [Beijerinckia indica subsp. indica ATCC 9039] gi|182633870|gb|ACB94644.1| protein-export membrane protein SecD [Beijerinckia indica subsp. indica ATCC 9039] Length = 531 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 203/532 (38%), Positives = 312/532 (58%), Gaps = 9/532 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDR----FPSAMPKNRISLGLDLRGGSHL 56 +R W + + L+ LP+ + P +P I LGLDL+GGSH+ Sbjct: 2 LRFATWKIASIIGMTLFAFLVILPSLFSPEQREAVSAHLPHWLPLRAIVLGLDLQGGSHV 61 Query: 57 VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKV 115 +LEVD + + D+LR L++E IG+ + + + AD + + K+ Sbjct: 62 LLEVDAPSVLKTQVDSLRDDLRRILREEKIGISGGIGLLPRGVQFRLADPAERAKLMPKL 121 Query: 116 TLFL--QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 GVN +V + I +V++ I+ + A++QS+E++R+R+D Sbjct: 122 QQLAGSSGVNLLGGNRAASFDIVEKDDGLIQVVVTDAAINDRVRRAVDQSIEVLRRRVDA 181 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 +G +E IQR G+ RIL+++PG QD S+L+++LGTTAK+ F V + + + + Sbjct: 182 LGTTEPNIQRQGNDRILVEVPGLQDTSKLKEILGTTAKLEFRLVAEPGTDPNEIEQLDQV 241 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 + +E +V + G L A FD +T +PVV+ F+ G ++F EVT N+G+P Sbjct: 242 ESNGKLP--IEKRVMVQGEDLTDAQPGFDSRTQEPVVNFRFNIRGGQKFGEVTAANVGRP 299 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 A+VLDG+V++AP I I G+ +ISG+FT+E A LA +LRAG+LP KL+IVEER VG Sbjct: 300 FAIVLDGKVISAPRIKGPITGGQGEISGSFTVEQANNLAILLRAGALPAKLSIVEERTVG 359 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 LG DSI G A G L+ L+M+V YG +G+ A+ ++ +++ A L LLGATLT Sbjct: 360 PGLGQDSINAGKRAAYVGAALVALYMLVTYGIFGVFANLALLVHIAFIFAGLVLLGATLT 419 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGIVL IG+AVDSN+L+ ERIREE +S+ +LD GF+RA++TI DSN+T +A Sbjct: 420 LPGIAGIVLTIGMAVDSNVLIYERIREEAHAGRSIVSALDAGFNRAFATIVDSNVTMFVA 479 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +L+F G G VRGFA+++ L IL ++ TA+++ R M+ R K+ + I Sbjct: 480 AAILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMITLWYRSKRPTQLPI 531 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 74/176 (42%), Gaps = 5/176 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I G + A + +Y+ + + F + A L++ I L G Sbjct: 359 GPGLGQDSINAGKRAAYVGAALVALYMLVTYGI-FGVFANLALLVHIAFIFAGLVLLGAT 417 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+R+R+ S +D N V +++ Sbjct: 418 LTLPGIAGIVLTIGMAVDSNVLIYERIREEAHA---GRSIVSALDAGFNRAFATIVDSNV 474 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 F++ + G + FA+ +A GI+ + +++ ++ + ++ Sbjct: 475 TMFVAAAILYFLGSGPVRGFAVSLALGILT-TIVTAVTMTRMMITLWYRSKRPTQL 529 >gi|163793144|ref|ZP_02187120.1| Preprotein translocase subunit SecD [alpha proteobacterium BAL199] gi|159181790|gb|EDP66302.1| Preprotein translocase subunit SecD [alpha proteobacterium BAL199] Length = 520 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 204/533 (38%), Positives = 315/533 (59%), Gaps = 22/533 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 ++ W + L +++C +G++ A PN P++ PS +P +I+LGLDL+GGS+L+L+V Sbjct: 2 LQFPTWKIALVALVCLLGIVYAAPNMFPRNTFGDVPSGVPGRQINLGLDLQGGSYLLLQV 61 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D V L+ + R L+ IG + D+ E Sbjct: 62 DTAVVVQERLEAIVESARRELRDAKIGYLGLGVHGKAAAFDVRDAADLEKARQLAR---- 117 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + T + + L++ + + +A++QS+EI+R+R+D+ G E Sbjct: 118 --------GLDTGITTKTEGDRVIVELTEQAVLDLSRNAVQQSIEIVRRRVDETGTREPL 169 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------- 232 IQR G++RILIQLPG +P R++ L+G TAK++FH V S M G Sbjct: 170 IQRQGNNRILIQLPGIDNPERIKALIGQTAKLTFHLVDTTASVADAMNGRVPPGSKVLPS 229 Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 + + + Y+V+ +V ISG +L + +F +PVV FD +G RRF + T +N+G+ Sbjct: 230 VDNQGPSHYVVKRRVMISGENLVDSQPSFQDN--RPVVSFRFDSIGGRRFGQATTENVGR 287 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 P A+VLD +V++APVI + I G ISG+F+++ A LA +LRAG+LP L ++EER+V Sbjct: 288 PFAIVLDDKVISAPVIREPILGGTGIISGSFSVQEAQDLALLLRAGALPAPLTVLEERSV 347 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G LG+DSI G A + GLVL++ FM+V YG +G+ A+ ++ LN+ L L LS+L ATL Sbjct: 348 GPGLGADSIAAGKVASIVGLVLVIAFMVVAYGLFGIFANMALLLNIGLILGALSVLQATL 407 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAGIVL IG+AVD+N+L+ ER+REE +S +LD G+ RA++TI DSN+T L Sbjct: 408 TLPGIAGIVLTIGMAVDANVLIFERVREEIDNGRSPVNALDAGYRRAFTTIVDSNLTTLF 467 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 A V LF G G V+GFA+T+G+ I+ SMFTA+ + R + +RY++ ++ I Sbjct: 468 AAVFLFALGAGPVKGFAVTLGIGIMTSMFTAVMVTRLFVAMWVRYRRPATLPI 520 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 84/207 (40%), Gaps = 4/207 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 G Q + + + T+ VGP + + I G V I+ + ++ Sbjct: 313 IISGSFSVQEAQDLALLLRAGALPAPLTVLEERSVGPGLGADSIAAGKVASIVGLVLVIA 372 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ + + F + A L+L+I LG ++ L +A ++ IG +V+ V++++ Sbjct: 373 FMVVAYGL-FGIFANMALLLNIGLILGALSVLQATLTLPGIAGIVLTIGMAVDANVLIFE 431 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ + S + +D V +++ + + + G + FA+ + Sbjct: 432 RVREEI---DNGRSPVNALDAGYRRAFTTIVDSNLTTLFAAVFLFALGAGPVKGFAVTLG 488 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + +++ + + +R Sbjct: 489 IGIMTSMFTAVMVTRLFVAMWVRYRRP 515 >gi|114777997|ref|ZP_01452897.1| protein-export membrane protein SecD [Mariprofundus ferrooxydans PV-1] gi|114551603|gb|EAU54156.1| protein-export membrane protein SecD [Mariprofundus ferrooxydans PV-1] Length = 528 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 185/529 (34%), Positives = 300/529 (56%), Gaps = 27/529 (5%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W + L + + L+ +LPN + +PSA+ +SLGLDL+GG HLVL+VD + Sbjct: 5 PRWKIWLILTVLVVSLMGSLPNIMS--TPSWWPSALSH-PMSLGLDLKGGVHLVLDVDVN 61 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 V ++ D R L+KE I + N + ++ ++ + Sbjct: 62 KAVTHSVEEDVDTARQVLRKEKIRYRKLASEGNTLKITIKEASDLAAAETLLKDTFS--- 118 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 NL + + L + D+ A++Q++E+IR RID +G +E I + Sbjct: 119 -------NYNLSPAAADNTFVLTLKDSVADETRKFAVDQAIEVIRGRIDALGTTEPVIVK 171 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237 G HRIL+Q+PG +D +R +QL+G TA++ F V + M G D Sbjct: 172 QGDHRILVQIPGYEDSARAKQLIGRTAELQFKLVDEKGDLEKAMAGSIPPGDIIMYGPAK 231 Query: 238 --------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 YL++ E+SG + A + D + ++ V + F+ G+ RF ++T + Sbjct: 232 RGANGQLNRQPYLLKKHTELSGSEIADARVSIDSRFNEYAVTLKFNSKGSHRFDKLTAAH 291 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 +G+ A++L+G V +APVI + I G AQI+G+FT A LA +LRAG+LP + +VEE Sbjct: 292 VGERFAIILEGVVNSAPVIRERISGGSAQITGSFTPAEAHDLAIILRAGALPAPVQVVEE 351 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R++G LG DSI +G +I+ G + +++FM + Y +G+VA+ ++ N++L + +S++G Sbjct: 352 RSIGPSLGQDSIDQGMKSIIIGTLFVLVFMGIYYRMFGMVANVALIFNMLLIIGAMSMIG 411 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 +TLTLP +AGIVL IG+AVD+N+L+ ERIREE ++ ++D G+ +A+STI D+NIT Sbjct: 412 STLTLPGMAGIVLTIGMAVDANVLIFERIREELNLGKTPLAAIDGGYDKAFSTIIDANIT 471 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 LIA +VLF FG G V+GFA+T+ + IL SMFTAI++ RA++ + Sbjct: 472 TLIAAIVLFQFGSGPVKGFAVTLSVGILASMFTAITVTRAIIAVSTEKR 520 Score = 152 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 91/178 (51%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + ++ I +G+ +II + +L+++ I ++ F + A LI ++ +G ++ G Sbjct: 353 SIGPSLGQDSIDQGMKSIIIGTLFVLVFMGIYYRM-FGMVANVALIFNMLLIIGAMSMIG 411 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++++R+R+ + L + ID ++ + Sbjct: 412 STLTLPGMAGIVLTIGMAVDANVLIFERIREELNL---GKTPLAAIDGGYDKAFSTIIDA 468 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I+ + + +G + FA+ ++ GI+ + ++I + I+ + RA+ ++ Sbjct: 469 NITTLIAAIVLFQFGSGPVKGFAVTLSVGILASMFTAITVTRAIIAVSTEKRARIEKL 526 >gi|260433304|ref|ZP_05787275.1| protein-export membrane protein SecD [Silicibacter lacuscaerulensis ITI-1157] gi|260417132|gb|EEX10391.1| protein-export membrane protein SecD [Silicibacter lacuscaerulensis ITI-1157] Length = 553 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 202/547 (36%), Positives = 309/547 (56%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43 W +L ++C +GLL+ALPN Q+ ++P+ +P + Sbjct: 7 WKRVLIWLVCVVGLLLALPNAFYTRVEQSNDARAAIEQGNDTPEMQAQAAQWPNWLPSSL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100 ++LGLDLRGG+HL+ EV D ++ E+R+ L+ V ++R+ ++I + Sbjct: 67 VNLGLDLRGGAHLLAEVQVSDVYETRMEAMWPEIRNALRDVRSEVGTIRRQPSEPDEIRI 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + V + + S + I + LS+ + Sbjct: 127 RISRPEGMPRALEVVRGLARPIQSLTGAGATDIDV-RAEGDTIVVQLSEAEKLASDDRTV 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 Q++EI+R+RID++G E TIQR GS RILIQ+PG S L++++GTTA+++F+ V+ Sbjct: 186 RQALEIVRRRIDEVGTREPTIQRQGSDRILIQVPGIGSASELKEIIGTTAQLTFNPVVSR 245 Query: 221 NSKKGFMFG----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 + G V D +G Y +E ++G L A +FD +P V F+ Sbjct: 246 GTDPDAPAGIGEKVVPSIDENGVYYTIEAAPVVTGEELVDAQPSFDQNG-RPAVSFRFNT 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR+F + TRDNIG P A+VLD V++APVI IP G I+GNFT+E + LA +LR Sbjct: 305 TGARKFGDYTRDNIGAPFAIVLDNEVISAPVIQSHIPGGSGIITGNFTVEESTNLAVLLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L +EER +G +LG DSI G A + V +++FM + YG +G+ A+ ++ + Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIEAGKVATIVAFVAVLVFMALSYGLFGIFANIALLI 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 NV L LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++++G+ Sbjct: 425 NVGLIFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKSAKGPARAIELGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 +A S I D+N+T I V+LF G G VRGFAIT+GL IL S+FTAI + R M++ Sbjct: 485 EKALSAILDANVTTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMVVMWFE 544 Query: 517 YKKMKSI 523 ++ K+I Sbjct: 545 RRRPKTI 551 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 90/175 (51%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G V I++ +A+L+++ + + F + A L++++ G +L G Sbjct: 379 TIGPELGQDSIEAGKVATIVAFVAVLVFMALSYGL-FGIFANIALLINVGLIFGLLSLIG 437 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K ++ I+ + L + Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---SAKGPARAIELGYEKALSAILDA 494 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + G + FAI + GI+ + ++IF+ +++ ++ R Sbjct: 495 NVTTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMVVMWFERRRPK 549 >gi|77919487|ref|YP_357302.1| preprotein translocase subunit SecF [Pelobacter carbinolicus DSM 2380] gi|77545570|gb|ABA89132.1| protein translocase subunit secF [Pelobacter carbinolicus DSM 2380] Length = 307 Score = 248 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 169/302 (55%), Gaps = 2/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPV 589 +I I I F+ R + S++ + + L G NYGIDF GG + V Sbjct: 1 MQVIKHDININFVGWRKLALIFSLVLIVVGMGSLVVKGGPNYGIDFSGGTLIQVKFTEAT 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + ++S L+ + + + QNF+G+ + + + + + T Sbjct: 61 KAAQIKSALKEMDMKGLLVQNFEGDSHEFLLRAQDTSSELEGLADEIRLHLEKTYGEGTV 120 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I+ E+VGP++ ++L +KG++ ++ + + +LIYI IRF++ FA+GAI L+ D+ TLG Sbjct: 121 EIRRVEMVGPQVGKDLRKKGLLAIVFAMVGVLIYITIRFEFKFAVGAIIALLHDVLITLG 180 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+LF E +L +AA L +IGYS+ND ++VYDR+R+N +T F ++ SINETL Sbjct: 181 AFSLFNKEIDLPIIAAFLAIIGYSLNDTIIVYDRIRENCAK-STKEEFPTRVNASINETL 239 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ TS + +L + ++GG VI +FA M G+VV SSIF+A+P+LLF D++ + Sbjct: 240 SRTILTSGTTLLVILALFLFGGGVIHNFAFAMLVGVVVGTYSSIFVASPVLLFWDDYKNR 299 Query: 830 NA 831 Sbjct: 300 KQ 301 >gi|188583933|ref|YP_001927378.1| protein-export hypothetical protein SecD [Methylobacterium populi BJ001] gi|179347431|gb|ACB82843.1| protein-export membrane protein SecD [Methylobacterium populi BJ001] Length = 533 Score = 248 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 201/535 (37%), Positives = 309/535 (57%), Gaps = 13/535 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ--------SMLDRFPSAM-PKNRISLGLDLR 51 +R + ++ + IGL +A+P+F+P S+ FPS + P I LGLDL+ Sbjct: 2 LRFSRTKIVATLAVILIGLSLAVPSFIPADSRKAFMASLPSWFPSWIIPSRAIVLGLDLQ 61 Query: 52 GGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKEN 110 GGS ++LE+D+ D V + D++R L++ + +R I + L D+ + Sbjct: 62 GGSQILLEIDQPDLVRSMVTGLRDDVRRILREASVSPEGGIRVINRGVELRIPDAAARAK 121 Query: 111 IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170 + K+ Q +N+ L + + I +VL+ I+ A+ Q++E++R+R Sbjct: 122 VMPKLRELAQPINNPLAAGGQTLTVNEAENGTIQLVLTDAGINDRTRRAVSQAIEVVRKR 181 Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230 ID G E +IQ+ GS RIL+Q+PG Q+P L LG TAK+ F + + Sbjct: 182 IDFGGTKEPSIQQQGSDRILVQVPGLQNPQELEDQLGKTAKLEFRMLAD---SPSGDVDL 238 Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +D G + VE +V G L A FDP+TH+P+V F+ GA+RF + T +N+ Sbjct: 239 LPSKDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENV 298 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 G+ +A+VLD + +APVI AI G QI+GNFT++ A L+ +LRAG+LP KL +VE R Sbjct: 299 GRRMAIVLDNVIQSAPVIRSAITGGSGQITGNFTVKDANDLSVLLRAGALPAKLTVVERR 358 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG LG DSI G A + L+++FM YG +G +A+ ++ ++V L L L+S+L A Sbjct: 359 VVGPGLGRDSIEAGEKATLVAAALVIIFMFATYGVFGFIANIALIVHVGLILGLMSVLEA 418 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 T+TLP IAGIVL IG AVDSN+L+ ER+REE R +S+ +L GF RA++TI DSN T Sbjct: 419 TMTLPGIAGIVLTIGTAVDSNVLIYERMREEARSGRSLVSALQAGFDRAFATIIDSNSTM 478 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IA ++LFF G G V+GFA+ L IL ++ TA+++ R M+ + + K++ Sbjct: 479 AIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYTWFRPKALPF 533 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 76/174 (43%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + R+ I G +++A ++I+++ + F A LI+ + LG ++ Sbjct: 361 GPGLGRDSIEAGEKATLVAAALVIIFMFATYGV-FGFIANIALIVHVGLILGLMSVLEAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+RMR+ + + S + + + ++ Sbjct: 420 MTLPGIAGIVLTIGTAVDSNVLIYERMREEAR---SGRSLVSALQAGFDRAFATIIDSNS 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I+ L + G + FA+ GI+ +++ + ++ Y W A Sbjct: 477 TMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYTWFRPKA 530 >gi|296446021|ref|ZP_06887971.1| protein-export membrane protein SecD [Methylosinus trichosporium OB3b] gi|296256539|gb|EFH03616.1| protein-export membrane protein SecD [Methylosinus trichosporium OB3b] Length = 529 Score = 248 bits (631), Expect = 5e-63, Method: Composition-based stats. Identities = 191/530 (36%), Positives = 305/530 (57%), Gaps = 7/530 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDR----FPSAMPKNRISLGLDLRGGSHL 56 +R + W +I + + + +P+ + + L P I LGLDL+GGS++ Sbjct: 2 LRFSKWKIIAVLALTLSAIFVVVPSLVSPASLQAISKALPEWAQPRTIVLGLDLQGGSYV 61 Query: 57 VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKV 115 +LEVD+ ++ + D++R L++E I + + + L D+ + K+ Sbjct: 62 MLEVDKASVLHTQVTNLRDDVRRILREEKIAITGGIGAQARGVQLRVPDAADRAKAMPKL 121 Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 QG + + + I IV+++ + + A++QS+E+IR+R+D +G Sbjct: 122 RQLAQGFGAARMGGAPPLEVREGEDGLIQIVVTEVGVTDKVRRAVDQSIEVIRRRVDALG 181 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235 E +IQR G RI++Q+PG QDP +L+ +LG TAK+ F V + + Sbjct: 182 TREPSIQRQGDDRIIVQVPGLQDPEQLKTILGQTAKLEFRLVAEPGASPSETEELEQTEQ 241 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 + +E +V + G L A FD + +PVV+ F+ GA++F +VT N+G+ A Sbjct: 242 QG--KIGIEKQVMVQGEDLTDAQPGFDQRNGEPVVNFRFNIRGAQKFGDVTSKNVGRLFA 299 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLD +V++AP I I G QISG+FT+E A L+ +LRAG+LP KL+IVEER VG Sbjct: 300 IVLDNKVISAPRILTPITGGSGQISGHFTVEQANNLSILLRAGALPAKLDIVEERTVGPG 359 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG DSI G A G L+V++M++ YG +G+ A+ ++F+++ A L L G+TLTLP Sbjct: 360 LGQDSIDAGKRAAYVGAGLVVVYMLITYGVFGIFANLALFVHIAFIFAGLVLTGSTLTLP 419 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL IG+AVDSN+L+ ERIREE +S+ SLD GF+RA++TI DSN+T +A Sbjct: 420 GIAGIVLTIGMAVDSNVLIYERIREEQHGGRSILASLDAGFNRAFATIVDSNVTMFVAAA 479 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +L+F G G VRGFA+++ L IL ++ TA+++ R M+ + + + I Sbjct: 480 ILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMIAAWYHFARPTRLPI 529 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 4/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + ++ I G + A +++Y+ I + F + A L + I L G Sbjct: 355 TVGPGLGQDSIDAGKRAAYVGAGLVVVYMLITYGV-FGIFANLALFVHIAFIFAGLVLTG 413 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++Y+R+R+ S +D N V + Sbjct: 414 STLTLPGIAGIVLTIGMAVDSNVLIYERIREEQHG---GRSILASLDAGFNRAFATIVDS 470 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 ++ F++ + G + FA+ +A GI+ +++ + ++ Y + Sbjct: 471 NVTMFVAAAILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMIAAWYHFARP 524 >gi|282600820|ref|ZP_05979795.2| putative SecDF protein-export membrane protein [Subdoligranulum variabile DSM 15176] gi|282571028|gb|EFB76563.1| putative SecDF protein-export membrane protein [Subdoligranulum variabile DSM 15176] Length = 772 Score = 247 bits (630), Expect = 6e-63, Method: Composition-based stats. Identities = 176/728 (24%), Positives = 313/728 (42%), Gaps = 72/728 (9%) Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ------D 198 + + + + +I R+ +GI++ + +I + + Sbjct: 58 VTFMPDGDVDATPEQMTAAKTVIEDRLVGLGITDYESYVDSNKDRIIVRFPWKTGESDFN 117 Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258 P +GTTAKM F K + + +SG + A Sbjct: 118 PQTAIDEIGTTAKMVFRKGS-----------------------TADGEEILSGDDVTSAN 154 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTR--DNIGKPLAVVLDGRVLTAPVINQAIPSGK 316 A + VV + F GA+ F + T G P+++ LD ++ +++AI G+ Sbjct: 155 AAYSETD-GWVVQLKFSSEGAQAFADATTELAASGDPISIWLDDENISTASVDEAITGGE 213 Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376 A I GNF ++A LA + +G+LP L+ + LG+ S+ A + VL+ Sbjct: 214 AIIKGNFDQDSAATLANQINSGALPFALSAESYSTISPTLGARSLEVMVLAGIVAFVLVA 273 Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA-----TLTLPSIAGIVLGIGLAVDSN 431 L MI+ Y G +A S+ V TLA++S + TLTLP IAGI+LGIG+ VD+N Sbjct: 274 LLMILRYRLPGTIAAVSLLGQVCATLAVVSGYFSVFPGSTLTLPGIAGIILGIGMGVDAN 333 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL-------------- 477 ++ ERI+EE KN+++ ++ GF + I D N+T +I +L Sbjct: 334 VITAERIKEELSKNKTLDGAIKSGFKMGLTPIIDGNVTIVIVAAILMGAFGPTDGFWAKV 393 Query: 478 ----FFFGGGAVRG----FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID-INPL 528 FF+ G + G F T+ S+L++ + R M+ + K +++ Sbjct: 394 FNPIFFWFGPSTAGTIYSFGFTLLTSVLLNFVFGVWATRVMIRGAVHCKALRNPWLYGGK 453 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 I F+ R S + G++ ++FKGG + + Sbjct: 454 KEGGAEYKTPTINFVGNRKKFYAFSCCVIAIVLIFSAVFGVSMDVEFKGGSMITLAYEGD 513 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ-PGDSVAQTRVLEMVKKKITEIVP 647 DL +++ + + + + L PG T L+ + + E P Sbjct: 514 ADLDALKNTVSTELNQSNLTLQTGSDISGGQTLTITLPGSETLSTDQLDGLLTTLNEQYP 573 Query: 648 LSTIQNTEIV--GPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLI 701 + E+ I E + K +V ++ + + +L+Y+ RF+ A+ L+ Sbjct: 574 DNQFVQNEVSNVDATIGNEFLLKSLVALVAACVLILLYVAYRFRRIGGLKAGATAVVALL 633 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDL 760 D+ G F L I N +AA+LT++GYS+ND VV+YDR+R+N L+ + ++L Sbjct: 634 HDMFIIFGVFVLLRIPLNGNFIAAMLTILGYSINDTVVIYDRIRENSALFGKKQMGLKEL 693 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSSIFIA 816 ++ SIN++ RS+ TS+ +++ + V I +FA P+ FG++ S+I IA Sbjct: 694 VNLSINQSFSRSLMTSITTCLALGVICVVSVVYRLDSIYTFAFPLLFGMISGVYSTICIA 753 Query: 817 APILLFIY 824 P+ + Sbjct: 754 TPLWVDWK 761 >gi|99080837|ref|YP_612991.1| preprotein translocase subunit SecD [Ruegeria sp. TM1040] gi|99037117|gb|ABF63729.1| protein-export membrane protein SecD [Ruegeria sp. TM1040] Length = 554 Score = 246 bits (628), Expect = 1e-62, Method: Composition-based stats. Identities = 207/548 (37%), Positives = 301/548 (54%), Gaps = 32/548 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43 W +L ++C GLL ALPN + ++P MP Sbjct: 7 WKRVLIWLVCVAGLLAALPNAFYTRVEQSNDAWAAIELEGETPERLDVAAQWPEWMPSGL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI----QNKIT 99 ++LGLDLRGG+HL+ EV D + E+R+ L+ E + + R+I ++I Sbjct: 67 VNLGLDLRGGAHLLAEVQVGDVYAARMDALWPEVRNTLRDERATIGTFRRIPDAPADQIR 126 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 L +D + V V S + I++ LS+ Sbjct: 127 LRLSDEAGMSRALELVRGLANPVTSLTGAGATDITVS-GQGDVITVSLSEEEKLASDDRT 185 Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219 + QS+EIIR+RID++G E TIQR GS RILIQ+PG + L++++GTTA+++F+ V+ Sbjct: 186 VRQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKEIIGTTAQLTFNPVVS 245 Query: 220 NNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 S G+ D G Y VE ++G L A FD +P V+ F+ Sbjct: 246 RGSDAEANAGIGNKVIPSLDEPGTYYTVETAPVVTGEELVDAQPAFDQNG-QPAVNFRFN 304 Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335 GAR+F + T NIG P A+VLD V++APVI IP G I+GNFT+E + LA +L Sbjct: 305 TAGARKFGDYTAQNIGAPFAIVLDDEVISAPVIRSHIPGGSGIITGNFTVEESTQLAVLL 364 Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395 RAG+LP KL +EER +G +LG DSI G A V +++FM++ YG +G+ A+ ++ Sbjct: 365 RAGALPAKLEFLEERTIGPELGQDSIDAGKVATVVAFAGVLVFMMLSYGLFGVFANVALI 424 Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455 LN+ L LSL+G TLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++D G Sbjct: 425 LNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEG 484 Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 +S+A S I D+NIT I V+LF G G VRGFAIT+GL IL S+FTAI + R +++ Sbjct: 485 YSKALSAIVDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLIIVMWF 544 Query: 516 RYKKMKSI 523 ++ K+I Sbjct: 545 ERRRPKTI 552 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 88/175 (50%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G V +++ +L+++ + + F + A LIL+I G +L G Sbjct: 380 TIGPELGQDSIDAGKVATVVAFAGVLVFMMLSYGL-FGVFANVALILNIALIFGALSLIG 438 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K ID+ ++ L V Sbjct: 439 GTLTLPGIAGIVLTVGMAVDANVLIFERIREELKA---GRGPARAIDEGYSKALSAIVDA 495 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + G + FAI + GI+ + ++IF+ I++ ++ R Sbjct: 496 NITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLIIVMWFERRRPK 550 >gi|328880239|emb|CCA53478.1| Protein-export membrane protein SecD [Streptomyces venezuelae ATCC 10712] Length = 780 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 181/692 (26%), Positives = 326/692 (47%), Gaps = 36/692 (5%) Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223 +E++R+R+D +G++E ++ R G RI+++LPG +DP ++G TA+++FH V + Sbjct: 62 LEVLRKRVDGLGVAEPSLARSGERRIVVELPGLRDPREAADVIGRTAQLTFHAVTGTAGE 121 Query: 224 KGFMFGVR------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 G D+ G + + VD++F + Sbjct: 122 TGGPAASPDGTRVLADPDAPGTFLTLAAPALTGDGVKSAEAVLDTQGGRGWTVDLAFRDG 181 Query: 278 GARRFFEVTRDNIGKPLAVVLDGR-------------VLTAPVINQAIPSGKAQISGNFT 324 A + +T + T I G AQI+G F+ Sbjct: 182 AAGTWARLTGAAACAAPGDPARRVAIVLDDRVVSAPGMQTGVPCGAGIGGGSAQITGGFS 241 Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 + A LAA+++ G+LP+ + VE+ VG LG+D+I A V GL F+IV+Y Sbjct: 242 GQEARDLAALVQGGALPVPVTTVEQSTVGPTLGADAIRASALAAVIGLACTGAFVIVVYR 301 Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN-- 442 G++A ++ L +++ A + LGATLTLP +AG VL IG+AVD+N+LV ER REE Sbjct: 302 LLGVLATVALLLYGLISYAAVVALGATLTLPGLAGFVLAIGIAVDANVLVFERAREEYAA 361 Query: 443 ---RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499 + + L F + +S + DS++T L+A +LF F G V+GF +T+ + ++ S Sbjct: 362 LGRTGGRDLRRPLATAFGKVWSAVADSHVTTLLAAGLLFVFATGPVKGFGVTLAIGVVTS 421 Query: 500 MFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFLIPDCIAIQFMRARFWGVGISIL 555 + TA+ I R + +R ++ + L R + M R + Sbjct: 422 LLTAMVITRLLADLTLRLPAVRRRPAVTGMAGLGRLRTRLTRRVPRLMAHRRRWLLTCAG 481 Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 + ++ + G+ +G++F GG + A RPVD R+ + + D Q Sbjct: 482 LLVAALAGIGVRGMEFGVEFTGGRIVQYTAERPVDADAARAAVTAAGFPDAVVQTTGEHD 541 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675 + +++ +T + + +++GP + EL ++ + + Sbjct: 542 VSVRVR-------ETGDAEQTEIREALTRVAGPVEAERDDLIGPSLGGELRTHALLALGL 594 Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 + A L+Y+ +RF+W +A A+ + D+ +G FA G + +AA+LT++GYSVN Sbjct: 595 AVAAQLLYLTVRFRWTYATAAVAAMTQDVLLVVGLFAWLGKPVDSVFLAALLTVVGYSVN 654 Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 D VVV D + ++ + DL D+++ +TL R+V T M A ++ +AV GG + Sbjct: 655 DSVVVLD-RLRELRRRGGGVPLADLADRAVAQTLPRTVNTGMGALFVLVALAVLGGDSLT 713 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 F++ + G+V+ +S++F A P+ + + Sbjct: 714 DFSVALLAGVVLGMASTVFTAMPLAVALETRN 745 >gi|117926491|ref|YP_867108.1| protein-export membrane protein SecD [Magnetococcus sp. MC-1] gi|117610247|gb|ABK45702.1| protein-export membrane protein SecD [Magnetococcus sp. MC-1] Length = 525 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 193/540 (35%), Positives = 311/540 (57%), Gaps = 30/540 (5%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 MR W + L ++ + ALP+ L PS MP I GLDL+GG +L+ + Sbjct: 1 MRQQPRWKLYLVVLVALGSIYYALPSLLG----GNLPSWMPNKVIHQGLDLQGGLYLLYD 56 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLF 118 V ++ + D R+ L+KE + + +++ + + E + + Sbjct: 57 VKVEEAIKQAGNNMVDSARNLLRKERQRYRGIEQVGADQVVIRLTPNSDTERMLSVLKDE 116 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 L+ + + E +I + L + ++ A++Q++EIIR RID G+SE Sbjct: 117 LR----------ESKVEHFQPEAQIRLTLGEAEKVEIRKFAVDQAIEIIRNRIDAFGVSE 166 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-- 236 +IQ+ G RI++QLPG ++P R + L+G TA++ F V + G Sbjct: 167 PSIQKQGERRIIVQLPGIKNPDRAKGLIGRTARLDFKLVNEKGDLNRALEGQVPADSELM 226 Query: 237 -----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 LV + +SG H+ A F+ +P+V + FD +G R+F ++ Sbjct: 227 YEERSANQGGKSAYPLLVFKRTILSGQHIQNAQTTFNEYN-EPIVSVKFDAVGGRKFSQI 285 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 T ++I + LA+VLDG+V +APVI I G+A ISG+FT E A LA +LRAG+LP L Sbjct: 286 TGEHIKERLAIVLDGKVQSAPVIQDKIAGGRATISGSFTREEAHDLAIVLRAGALPAPLV 345 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 I+EER VG LG+DS+ +G +++ G VL+VLFM++ Y +G++A+ ++ LNV + ++LL Sbjct: 346 ILEERTVGPTLGADSVAQGLNSVLIGGVLVVLFMVLYYKGFGMLANLAVVLNVTILVSLL 405 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 +L+ ATLTLP IAG VL +G+AVD+N+L+ ERIREE R +S ++D G+S+A+STI D Sbjct: 406 ALMQATLTLPGIAGAVLLLGMAVDANVLIFERIREELRLGKSPLAAIDHGYSKAFSTILD 465 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +NIT LI V+L+ FG G VRGFA+T+ + +L SMFTAI + R ++ +++ +++K++ I Sbjct: 466 ANITTLITAVILYQFGTGPVRGFAVTLSVGLLASMFTAIFVTRVVLAEVVKNRRLKTLSI 525 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 87/173 (50%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + + +G+ V+I + +++++ + +K F + A ++L++T + AL Sbjct: 353 GPTLGADSVAQGLNSVLIGGVLVVLFMVLYYK-GFGMLANLAVVLNVTILVSLLALMQAT 411 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A + L+G +V+ V++++R+R+ ++L S ID ++ + ++ Sbjct: 412 LTLPGIAGAVLLLGMAVDANVLIFERIREELRL---GKSPLAAIDHGYSKAFSTILDANI 468 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 I+ + + +G + FA+ ++ G++ + ++IF+ +L + R Sbjct: 469 TTLITAVILYQFGTGPVRGFAVTLSVGLLASMFTAIFVTRVVLAEVVKNRRLK 521 >gi|308273582|emb|CBX30184.1| Protein-export membrane protein secD [uncultured Desulfobacterium sp.] Length = 525 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 187/543 (34%), Positives = 291/543 (53%), Gaps = 36/543 (6%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ W + L ++ ++ LP F P P +I+LGLDL+GG HL LEV Sbjct: 1 MKIFSWKLYLSVIVLITAIIYFLPTFK--------PGIWPHKKINLGLDLQGGMHLALEV 52 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119 + + V ++ +++L+ + + + + R KI++ + + Sbjct: 53 ESEKAVESSIERMANDLKGLFRSQHLSYQKIERIEGTKISIVLEGQENIDGFDKILEKEF 112 Query: 120 QGVNSKLNVDPKKNLLVTTTEKE---ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + ++ + + I + + + + AIEQ++E IR RIDQ G+ Sbjct: 113 KELR----------IVSRSNDGGLLKIVMDYPEKEAETIKKLAIEQALETIRNRIDQFGV 162 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 SE I G RI++QLPG D R ++L+G TA + F + + + Sbjct: 163 SEPDISLEGKDRIIVQLPGVSDTQRAKELIGKTALLEFKLLDETQDPEKALSEGAPPGTE 222 Query: 237 D--------------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282 YLV+ ++G L+GA+ D + ++P V I FD GA+ F Sbjct: 223 ILYETKEDPRTRRVMKQPYLVKKLTLLTGASLSGASVQIDSQYNEPYVSIDFDNKGAKSF 282 Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342 +T +N+ K LA+VLD +V +APVI + I G A+I+G+FT E A LA +LRAG+LP Sbjct: 283 ERITEENVKKRLAIVLDNKVYSAPVIQEKISGGHARITGSFTAEEARDLAIVLRAGALPA 342 Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402 + I+EER VG LG+DSI KG ++ G +LI +FM Y G+VAD + NV+L Sbjct: 343 PVKIIEERTVGPSLGTDSINKGLLSMWIGGLLIFVFMAFYYKWSGVVADIGLVFNVLLIT 402 Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462 L+ ATLTLP +AGIVL IG+AVD+N+L+ ERIREE ++ ++D GF RA T Sbjct: 403 GALAAFQATLTLPGLAGIVLTIGMAVDANVLIYERIREELALGKTARAAVDAGFERATWT 462 Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 I DSN+T LIA +VLF FG G V+GFA+T+ + I+ ++FTA+ + R + + I +K+K Sbjct: 463 ILDSNVTTLIAGLVLFQFGTGPVKGFAVTLSIGIVTTVFTALIMTRVIFEYFIYDRKIKK 522 Query: 523 IDI 525 + I Sbjct: 523 LSI 525 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 83/174 (47%), Gaps = 5/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I KG++ + I + + +++ +KW + A L+ ++ G A F Sbjct: 353 GPSLGTDSINKGLLSMWIGGLLIFVFMAFYYKWS-GVVADIGLVFNVLLITGALAAFQAT 411 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+R+R+ + L + R +D + +++ Sbjct: 412 LTLPGLAGIVLTIGMAVDANVLIYERIREELAL---GKTARAAVDAGFERATWTILDSNV 468 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 I+ L + +G + FA+ ++ GIV +++ + I FIYD + K Sbjct: 469 TTLIAGLVLFQFGTGPVKGFAVTLSIGIVTTVFTALIMTRVIFEYFIYDRKIKK 522 >gi|86138469|ref|ZP_01057043.1| protein-export membrane protein SecD [Roseobacter sp. MED193] gi|85824994|gb|EAQ45195.1| protein-export membrane protein SecD [Roseobacter sp. MED193] Length = 553 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 213/547 (38%), Positives = 306/547 (55%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43 W +L ++C GLL+ALPN Q++++++PS +P + Sbjct: 7 WKRVLIWLVCLTGLLLALPNGFYTRVEQSNDAAAEIIAKGDTPERQALVEQWPSYLPSSL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100 ++LGLDLRGG+HL+ EV +D + E+R L+ E V S R+ Q +I L Sbjct: 67 VNLGLDLRGGAHLLAEVKVEDVYGARMDALWPEVRDALRPERATVGSFRRQQAPEGQIRL 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + V + S + T I+I LS+ + Sbjct: 127 KISKPEGMGRALEVVRGLANPITSLTGAGANDIDVS-GTGDLITIELSEAEKLASDDRTV 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 QS+EIIR+RID++G E TIQR G+ RILIQ+PG S L+ ++GTTA+++F V+ Sbjct: 186 RQSLEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSASELKAIIGTTAQLTFSPVVGR 245 Query: 221 NSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 S GV D G Y +E ++G L A +FD +P V+ F+ Sbjct: 246 GSDPDAPAGVGNKVIPSVDEPGAFYTIEAAPVVTGEELVDAQPSFDQNG-RPAVNFRFNT 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR+F + T +NIG P A+VLD V++APVI IP G I+GNFTIE + LA +LR Sbjct: 305 SGARKFGDYTAENIGSPFAIVLDDEVISAPVIQSHIPGGSGIITGNFTIEESTNLAILLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L +EER +G +LG DSI G A + V +++FM + YG +GL A+ ++ L Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKIATIVAFVGVLVFMALSYGLFGLFANVALIL 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 NV L LSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++D G+ Sbjct: 425 NVALIFGFLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREEIKSGRGPARAIDEGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 S+A S I D+NIT I V+LF G G VRGFAIT+GL I+ S+FTAI + R M++ Sbjct: 485 SKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRLMIVMWFE 544 Query: 517 YKKMKSI 523 ++ K I Sbjct: 545 RRRPKKI 551 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 91/176 (51%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + I++ + +L+++ + + F L A LIL++ GF +L G Sbjct: 379 TIGPELGQDSIDAGKIATIVAFVGVLVFMALSYGL-FGLFANVALILNVALIFGFLSLIG 437 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K + ID+ ++ L + Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREEIK---SGRGPARAIDEGYSKALSAILDA 494 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ FI+ + + G + FAI + GI+ + ++IF+ +++ ++ R Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRLMIVMWFERRRPKK 550 >gi|84688039|ref|ZP_01015900.1| protein-export membrane protein SecD [Maritimibacter alkaliphilus HTCC2654] gi|84663945|gb|EAQ10448.1| protein-export membrane protein SecD [Rhodobacterales bacterium HTCC2654] Length = 555 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 190/551 (34%), Positives = 298/551 (54%), Gaps = 33/551 (5%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQ------------------------SMLDRFPSAM 39 + + ++ ++ GL A+PN + +P + Sbjct: 5 SIFKRVVIILVVVTGLAYAMPNLFYPRVETHNDAVTAIEQAGGEATPELAADRSAWPGWL 64 Query: 40 PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR---QIQN 96 P N ++LGLDLRGG+HL+ EV +D + E+ L+ V ++R Sbjct: 65 PSNLVNLGLDLRGGAHLLAEVQVEDVYKQRMDSIWQEVFPVLRDARDIVGTIRRVPTEDG 124 Query: 97 KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156 + + D+ ++ A V V + + EI + LS+ Sbjct: 125 TLRVKIGDTTHIDDAAQLVRALATPVVTITGTGSTNFTV-DVEGDEIVVALSEAEKLATD 183 Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 I+QS+EIIR+R+D++G E TIQR G RILIQ+PG L+ L+GTTA+++F Sbjct: 184 DRTIQQSLEIIRRRVDEVGTREPTIQRQGEDRILIQVPGLGSADELKALIGTTAQLTFQP 243 Query: 217 VLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272 V+ + G D +G Y++ED ++G L A +F +P V+ Sbjct: 244 VVSRTTNPDQAPGPNNVLYPSVDEEGVYYVLEDVPVVTGEDLVDAQPSF-DTNGRPAVNF 302 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 F+ GAR F + T +N+G P A+VLD V++AP IN+ IP G I+GNFT+E + LA Sbjct: 303 RFNPHGARLFGDYTAENVGSPFAIVLDSEVISAPRINEHIPGGSGIITGNFTVEESTNLA 362 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392 +LRAG+LP ++ +EER +G +LG+DSI G A + +++FM + YG +G++A+ Sbjct: 363 VLLRAGALPAEMTFLEERTIGPELGADSIAAGEIASLVAFAGVLVFMALSYGWFGMIANV 422 Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452 ++ LNV + LLS +GATLTLP IAGIVL IG+AVD+N+LV ERIREE + + ++ Sbjct: 423 ALILNVAMLFGLLSAIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKNKRGPARAI 482 Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 D+G+ +A S I D+NIT + +LF G G VRGFA+T+GL ++ S+FTAI + R M++ Sbjct: 483 DLGYEKALSAIIDANITTFLTAGILFIMGSGPVRGFAVTLGLGLITSVFTAIFVTRLMVV 542 Query: 513 FIIRYKKMKSI 523 ++ K++ Sbjct: 543 IWFERRRPKTL 553 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 92/208 (44%), Gaps = 4/208 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 G+ + V + + T +GP++ + I G + +++ +L+ Sbjct: 348 IITGNFTVEESTNLAVLLRAGALPAEMTFLEERTIGPELGADSIAAGEIASLVAFAGVLV 407 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ + + W F + A LIL++ G + G L +A ++ IG +V+ V+V++ Sbjct: 408 FMALSYGW-FGMIANVALILNVAMLFGLLSAIGATLTLPGIAGIVLTIGMAVDANVLVFE 466 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ +K ID + L + ++ F++ + + G + FA+ + Sbjct: 467 RIREELK---NKRGPARAIDLGYEKALSAIIDANITTFLTAGILFIMGSGPVRGFAVTLG 523 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830 G++ + ++IF+ +++ ++ R Sbjct: 524 LGLITSVFTAIFVTRLMVVIWFERRRPK 551 >gi|170740722|ref|YP_001769377.1| protein-export membrane protein SecD [Methylobacterium sp. 4-46] gi|168194996|gb|ACA16943.1| protein-export membrane protein SecD [Methylobacterium sp. 4-46] Length = 534 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 204/536 (38%), Positives = 307/536 (57%), Gaps = 14/536 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF----PSAM----PKNRISLGLDLRG 52 +R + ++ + +GL +A+P+F F PS + P I LGLDL+G Sbjct: 2 LRFSSSKLVGTLAVIIVGLALAIPSFFSPEQRKAFVASAPSWLTALVPTRAIVLGLDLQG 61 Query: 53 GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI-GVFSMRQIQNKITLSFADSRFKENI 111 GS +VLEVD D Q D++R L++EG+ ++ + L +D + Sbjct: 62 GSQIVLEVDRPDLTRTMAQQLRDDVRRALREEGVQADGGVQITPRGVQLRVSDPAARAKA 121 Query: 112 ADKVTLFLQGVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169 K+ Q V + + + I + ++ + + A++Q++E++R+ Sbjct: 122 LPKLQALSQPVTDAVLGQTGARTLEVRDEPNGTIQLTFTEAGTNARVRRAVQQAIEVVRR 181 Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 R+D G +E +IQ+ G+ RIL+Q+PG QDP RL + LG TAK+ F + Sbjct: 182 RVDLGGTTEPSIQQQGADRILVQVPGLQDPQRLEEQLGKTAKLEFRMLAD---SAAGDVD 238 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 + RDS+G + VE +V G L A FD KT++P+V+ F+ GA+RF + T +N Sbjct: 239 LLPSRDSNGQKVPVERRVMADGADLTDAQPGFDQKTNEPIVNFKFNLRGAQRFGQATSEN 298 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 +G+P+A+VLD V++AP I Q I G+ QISG FT++ A L+ +LRAG+LP KLNI+E Sbjct: 299 VGRPMAIVLDNEVVSAPRILQPITGGQGQISGRFTVQQANDLSVLLRAGALPAKLNIIER 358 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R VG LG DSI G A +A VL+V M YG +GL A+ ++ ++V L L L+S+L Sbjct: 359 RTVGPGLGRDSIEAGKLATIAATVLVVTMMFACYGVFGLFANIALMVHVGLILGLMSVLE 418 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 AT+TLP IAGIVL IG AVDSN+L+ ER+REE R +S+ +L GF RA++TI DSN T Sbjct: 419 ATMTLPGIAGIVLTIGTAVDSNVLIYERVREEVRAGRSIPSALQAGFDRAFATIVDSNST 478 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IA ++LFF G G VRGFA+ L IL ++ TA+++ R M+ + K + I Sbjct: 479 MAIAAIILFFMGSGPVRGFAVVFILGILTTVITAVTLTRMMIAVWYHRFRPKVLPI 534 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 73/173 (42%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + R+ I G + I + + ++ ++ + F L A L++ + LG ++ Sbjct: 362 GPGLGRDSIEAGKLATIAATVLVVTMMFACYGV-FGLFANIALMVHVGLILGLMSVLEAT 420 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+R+R+ ++ S + + V ++ Sbjct: 421 MTLPGIAGIVLTIGTAVDSNVLIYERVREEVRA---GRSIPSALQAGFDRAFATIVDSNS 477 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 I+ + + G + FA+ GI+ +++ + ++ Y Sbjct: 478 TMAIAAIILFFMGSGPVRGFAVVFILGILTTVITAVTLTRMMIAVWYHRFRPK 530 >gi|83311613|ref|YP_421877.1| preprotein translocase subunit SecD [Magnetospirillum magneticum AMB-1] gi|82946454|dbj|BAE51318.1| Preprotein translocase subunit SecD [Magnetospirillum magneticum AMB-1] Length = 522 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 200/531 (37%), Positives = 317/531 (59%), Gaps = 25/531 (4%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W + L +++ G++ A+PN L + DR P + +SLGLDL+GGS+L+LEVD Sbjct: 5 PKWKIALVAIVSLFGIVFAVPNLLSRDQADRMPHWL--QPVSLGLDLQGGSYLLLEVDTA 62 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 L + +R+ L+KE I + +++++ ++ + + + Sbjct: 63 YVFREQLTSLVEGVRTTLRKEKIKYSDLGARGDQVSVRIIEADERAKAREFLRKIDAEAA 122 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + T + + + S+ + + AIEQS+EI+R+RID++G E +IQR Sbjct: 123 -----------IETRDDGSMVLKYSEQAVKARKTAAIEQSLEIVRRRIDELGTREPSIQR 171 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL---------- 233 G RI++QLPG +DP R++ LLG TAK++FH + + G Sbjct: 172 QGEDRIVVQLPGVKDPDRIKALLGKTAKLTFHLLDDSTGADEAQKGRVPPGSMLLPSAEK 231 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 Y+V ++E+ G L + A + +PVV F GA++F + TR+N GK Sbjct: 232 ERGMPESYVVRKRIEVGGDMLVDSKATYSEG--RPVVSFRFSAAGAKKFGDATRENAGKF 289 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+VLD +V++AP IN+ I G ISG+F+++ A L+ +LRAG+LP L ++EER VG Sbjct: 290 LAIVLDEKVISAPRINEPILGGSGIISGSFSVQQAQDLSLLLRAGALPAPLQVLEERTVG 349 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 DLG+DSI G A + GL L+V+ MI++YG G +AD ++ LN+IL LA LS LGATLT Sbjct: 350 PDLGADSIQAGAVASLLGLALVVVLMIIVYGSLGALADLAMVLNLILLLASLSALGATLT 409 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGIVL +G+AVD+N+L+ ER+REE R +S+ ++ G+ RA+ TIFD+++T L+A Sbjct: 410 LPGIAGIVLTMGMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVA 469 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +LF FG G VRGFA+T+ L +L S+FTA+ + R M++ +R++++K++ Sbjct: 470 AALLFQFGSGPVRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLKTLP 520 Score = 109 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 75/173 (43%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G V ++ +++ + I + AL A ++L++ L + G Sbjct: 349 GPDLGADSIQAGAVASLLGLALVVVLMIIVYGSLGAL-ADLAMVLNLILLLASLSALGAT 407 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+RMR+ + S I + G + Sbjct: 408 LTLPGIAGIVLTMGMAVDANVLIYERMREEQR---NGRSIMSAIQAGYDRAFGTIFDAHV 464 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ + +G + FA+ + G++ + +++ + +++ WR Sbjct: 465 TTLVAAALLFQFGSGPVRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLK 517 >gi|217978987|ref|YP_002363134.1| protein-export membrane protein SecD [Methylocella silvestris BL2] gi|217504363|gb|ACK51772.1| protein-export membrane protein SecD [Methylocella silvestris BL2] Length = 532 Score = 244 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 207/532 (38%), Positives = 315/532 (59%), Gaps = 8/532 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF----PSAMPKNRISLGLDLRGGSHL 56 +R W ++ M+ I LL+ +P+ L PS +P I LGLDL+GGSH+ Sbjct: 2 LRFATWKIVSIVMMTVIALLLIVPSLLGPQSRAALMAHAPSFLPIRPIVLGLDLQGGSHV 61 Query: 57 VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKV 115 +LEVD V + D +R L++E + + + + L D+ +E I K+ Sbjct: 62 LLEVDGQSVVKTLIDNLRDSVRRTLREEKASISGGIGVLPRGVQLRIPDAAERERIMPKL 121 Query: 116 TLFLQGVNSKLNV--DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 L ++ ++ + T + I +++ I + A+EQS+E++R+R+D Sbjct: 122 RLLTAPASAGISGVGGASVFDVTETADGLIQFTVTEAGIKAKMRRAVEQSIEVLRRRVDA 181 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 +G +E IQR G R+L+++PG QD +L+++LGTTAK+ F V + Sbjct: 182 LGTTEPNIQRQGDDRVLVEVPGLQDTGKLKEILGTTAKLEFRLVSD-TGADPAETEMLEE 240 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 + G++ V+ +V + G L A FD +T +PVV+ F+ G +RF EVT +N+G+P Sbjct: 241 VERPGSKLPVQKRVMVQGEDLTDAQPGFDQRTQEPVVNFRFNIRGGQRFGEVTSENVGRP 300 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 A+VLDG+V++AP I I G QISG+FT+E+A LA +LRAG+LP KL IVEER VG Sbjct: 301 FAIVLDGKVISAPRILGPITGGSGQISGHFTVESANNLAILLRAGALPAKLTIVEERTVG 360 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 LG DSI G A G L+ +M++ YG +G+ A+ ++F+++ A L LLGATLT Sbjct: 361 PGLGQDSIDAGKRAAYVGAALVACYMLITYGIFGVFANIALFVHIAFIFAGLVLLGATLT 420 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGIVL IG+AVDSN+L+ ERIREE+ +S+ SLD GF RA++TI DSN+T +A Sbjct: 421 LPGIAGIVLTIGMAVDSNVLIYERIREESHAGRSIVSSLDAGFKRAFATIVDSNVTMFVA 480 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +L+F G G VRGFA+++ L IL ++ TA+++ R M+ RYK+ + I Sbjct: 481 AAILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMITLWYRYKRPVKLPI 532 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 71/176 (40%), Gaps = 5/176 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I G + A + Y+ I + F + A L + I L G Sbjct: 360 GPGLGQDSIDAGKRAAYVGAALVACYMLITYGI-FGVFANIALFVHIAFIFAGLVLLGAT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+R+R+ S +D V +++ Sbjct: 419 LTLPGIAGIVLTIGMAVDSNVLIYERIREESHA---GRSIVSSLDAGFKRAFATIVDSNV 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 F++ + G + FA+ +A GI+ + +++ ++ + ++ Sbjct: 476 TMFVAAAILYFLGSGPVRGFAVSLALGILT-TIVTAVTMTRMMITLWYRYKRPVKL 530 >gi|167647070|ref|YP_001684733.1| preprotein translocase subunit SecD [Caulobacter sp. K31] gi|167349500|gb|ABZ72235.1| protein-export membrane protein SecD [Caulobacter sp. K31] Length = 532 Score = 244 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 174/529 (32%), Positives = 292/529 (55%), Gaps = 9/529 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W V + G++ +LPN LPQ LD P +P +++LGLDL+GGS+L+ EVD D Sbjct: 5 SRWKVTAVILSVIFGIVFSLPNVLPQKTLDALPGWVPHQKLNLGLDLQGGSYLLYEVDTD 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 L +++R+ L+ + I + + + + D + + + G Sbjct: 65 ALRAERLTNMVEDVRTTLRNDQIEFGELGEAGGVVRVRITDPGKVDQAVSLLRKSVGGPL 124 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + + + + + + + A++QS+E IR+R+D +G E TI R Sbjct: 125 -QGAIGGRDTRIDNKGDGRLELSFVPEAAKADAAKAVDQSIETIRRRVDAMGTKEPTITR 183 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-------VRFLRDS 236 G +RI+IQ GE DP+RL+ ++G TAK++F V + + G V + Sbjct: 184 QGVNRIVIQAAGESDPARLQAVIGQTAKLTFQMVDETVTPEDMAAGRIPPGVMVIPGAQA 243 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 V + ++G L A FD V F GAR+F + T N+GK A+ Sbjct: 244 GAPPIPVAKRALVTGEDLVDANQTFDQNG-AAAVGFRFGGSGARKFGDATTRNVGKRFAI 302 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLD + ++ P INQ +P G I+GNFT E+A LA +LR+G+LP KLN+ E+R VGA+L Sbjct: 303 VLDNKYISDPRINQPLPGGSGIITGNFTPESAAELALLLRSGALPAKLNLEEQRTVGAEL 362 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G+D++ G ++ G + +F+I+ YG +G A ++F+NV+L + ++S+ ATLT P Sbjct: 363 GADAVRAGAISLAIGAAAMFVFIILAYGLFGTFAAVALFVNVLLIIGIMSMTQATLTFPG 422 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAG++L + +AVD+N+L+ ER+R+E +S + D G+ RA +I D+NIT++I+ ++ Sbjct: 423 IAGLILTLAVAVDANVLIYERMRDEAAAGRSPMSAADTGYRRALVSIMDANITSVISALI 482 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +F G G V+GFA T+ + + S+FTAI I + ++ + + K K + I Sbjct: 483 MFSMGAGPVKGFAWTLLIGVFTSLFTAILITQVLIGWWFKVTKPKKLPI 531 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 72/178 (40%), Gaps = 4/178 (2%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VG ++ + +R G + + I A AM ++I + + F A L +++ +G ++ Sbjct: 355 QRTVGAELGADAVRAGAISLAIGAAAMFVFIILAYGL-FGTFAAVALFVNVLLIIGIMSM 413 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 +A ++ + +V+ V++Y+RMR S D L + Sbjct: 414 TQATLTFPGIAGLILTLAVAVDANVLIYERMRDEAAA---GRSPMSAADTGYRRALVSIM 470 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ + IS L M G + FA + G+ + ++I I ++ + + Sbjct: 471 DANITSVISALIMFSMGAGPVKGFAWTLLIGVFTSLFTAILITQVLIGWWFKVTKPKK 528 >gi|260426573|ref|ZP_05780552.1| protein-export membrane protein SecD [Citreicella sp. SE45] gi|260421065|gb|EEX14316.1| protein-export membrane protein SecD [Citreicella sp. SE45] Length = 553 Score = 244 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 190/547 (34%), Positives = 298/547 (54%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43 W +L + GL++A PN ++ ++P +P + Sbjct: 7 WKRVLIWALVVAGLVLAAPNLFYSRVESHNDAVKAIEKSGSTAELEAQAGQWPEWLPSDL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITL 100 ++LGLDLRGG+HL+ EV D ++ ++R L+ V ++R + + + Sbjct: 67 VNLGLDLRGGAHLLAEVRVADVYQSRMEALWPDVRDALRGARDEVGTIRLQSSEPGTLRV 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + V Q V S + +I + LS+ + Sbjct: 127 RISKPDGMARALELVRALAQPVVSLTGAGATDLEVS-GEGSDIVVQLSEAERQATDERTM 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217 QS+EIIR+RID++G E TIQR GS RILIQ+PG + L+ ++GTTA+++F V Sbjct: 186 RQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSATELKDIIGTTAQLTFQPVVSR 245 Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 N G V D DG Y++E ++G L + +FD +P V F+ Sbjct: 246 TTNPNENAGSGNEVLPSLDEDGVYYVLEQAPVVTGEELVDSQPSFDQNG-RPAVTFRFNP 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR+F + T +NIG P A+VLD V++APVI I G I+GNF++E + LA +LR Sbjct: 305 SGARKFGDYTAENIGSPFAIVLDDEVISAPVIQSHIAGGSGIITGNFSVEESTNLAVLLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L+ +EER +G +LG DSI G A +++FM + YG +GL A+ ++ L Sbjct: 365 AGALPAGLDFLEERTIGPELGQDSIDAGKLATGVAFAAVLIFMALTYGLFGLFANVALIL 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 N+ L + +LS +GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++++G+ Sbjct: 425 NIGLIMGILSAIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKSARGPARAIELGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 RA S I D+N+T +I V+L+ G G VRGFAIT+GL I+ S+FTAI + R +++ Sbjct: 485 ERALSAIIDANLTTIITAVILYVIGSGPVRGFAITLGLGIVTSVFTAIWVTRLLIVIWFE 544 Query: 517 YKKMKSI 523 ++ +++ Sbjct: 545 RRRPRTL 551 Score = 154 bits (388), Expect = 6e-35, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 87/175 (49%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + ++ A+LI++ + + F L A LIL+I +G + G Sbjct: 379 TIGPELGQDSIDAGKLATGVAFAAVLIFMALTYGL-FGLFANVALILNIGLIMGILSAIG 437 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K ++ I+ L + Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---SARGPARAIELGYERALSAIIDA 494 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ I+ + + V G + FAI + GIV + ++I++ +++ ++ R Sbjct: 495 NLTTIITAVILYVIGSGPVRGFAITLGLGIVTSVFTAIWVTRLLIVIWFERRRPR 549 >gi|254467279|ref|ZP_05080690.1| protein-export membrane protein SecD [Rhodobacterales bacterium Y4I] gi|206688187|gb|EDZ48669.1| protein-export membrane protein SecD [Rhodobacterales bacterium Y4I] Length = 553 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 204/547 (37%), Positives = 304/547 (55%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43 W +L ++C GL++ALPN ++PS +P Sbjct: 7 WKRVLIWLVCAAGLMLALPNGFYTRVEQANDAAADIIAKGETPERLETAGQWPSFLPSGL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI---QNKITL 100 ++LGLDLRGG+HL+ EV +D + E+R L+ E V + R+ ++I L Sbjct: 67 VNLGLDLRGGAHLLAEVQVEDVYEARMDALWPEVRDALRPERDTVGTFRRQPGPSDEIRL 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + V + + L ++ V+ + + LS+ + Sbjct: 127 KLSKPDGMARALEIVRGLANPITT-LTGVGDNDIEVSAQGDILVVRLSEAEKIASDDRTV 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217 QS+EI+R+RID++G E TIQR G+ RILIQ+PG S L+ ++GTTA+++F+ V Sbjct: 186 RQSLEIVRRRIDEVGTREPTIQRQGADRILIQVPGIGSASELKAIIGTTAQLTFNPVVGR 245 Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 ++ G V D +G Y +E ++G L A ++D +P V F+ Sbjct: 246 GSDPDAAPGMGNKVIPSLDEEGAYYTIEAAAVVTGEDLVDAQPSYDQNG-RPAVTFRFNT 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GARRF + T +NIG P A+VLD V++APVI IP G I+GNFTIE + LA +LR Sbjct: 305 SGARRFGDYTAENIGSPFAIVLDDEVVSAPVIQSHIPGGSGIITGNFTIEESTNLAVLLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L +EER +G +LG DSI G A + V +++FM + YG +GL A+ ++ L Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKIATIVAFVAVLVFMGLSYGLFGLFANVALIL 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 N+ L +LSL+G TLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++D G+ Sbjct: 425 NIALIFGMLSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKSGRGPAKAIDEGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 S+A S I D+NIT I V+LF G G VRGFAIT+GL IL S+FTAI + R M++ Sbjct: 485 SKALSAILDANITTFITAVILFAIGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVMWFE 544 Query: 517 YKKMKSI 523 ++ K+I Sbjct: 545 RRRPKTI 551 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 91/175 (52%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + I++ +A+L+++ + + F L A LIL+I G +L G Sbjct: 379 TIGPELGQDSIDAGKIATIVAFVAVLVFMGLSYGL-FGLFANVALILNIALIFGMLSLIG 437 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K + ID+ ++ L + Sbjct: 438 GTLTLPGIAGIVLTVGMAVDANVLIFERIREELK---SGRGPAKAIDEGYSKALSAILDA 494 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + G + FAI + GI+ + ++IF+ +++ ++ R Sbjct: 495 NITTFITAVILFAIGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVMWFERRRPK 549 >gi|71894189|ref|YP_278297.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma synoviae 53] gi|71850977|gb|AAZ43586.1| Protein-export membrane protein SecD [Mycoplasma synoviae 53] Length = 864 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 162/861 (18%), Positives = 323/861 (37%), Gaps = 72/861 (8%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV--D 61 + W L S I + I + ++ +D GG ++++V D Sbjct: 12 SNWKRFLISAITIVSTFIVIVLGSV---------FYISKDVNKSIDYGGGIEVLVQVKKD 62 Query: 62 EDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + + L L G+ ++ + + + N + Sbjct: 63 DQNADKTLTEQVNKSLFDRLTGGTGLNGITVSSEGDG-KIRITKAGNVTNAQRDIFEK-- 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +K +L T + + IG ++ Sbjct: 120 -------EISEKPILTVTDINLKPLFFDGSFTANGSLD---------------IGTPQNW 157 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + +D +L + + V D D Sbjct: 158 VPPFALGAAKYVNQNGRDSVQLTLKNSDARLEWTKATDYLSKQSQPNNLVLMWLDIDKLL 217 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 ++ + + + NF ++ I R + + K + + + Sbjct: 218 HIAKTQYPLEWKESGENLWNFVHVNNQAYTQIQDPVTNQPR---LVANEFKKNVLDIQNK 274 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +++ +N I + + I+GNFT A LA + G ++I+ + ++L ++ Sbjct: 275 YLISVAQVNNPISTSEVIINGNFTNTQAQELANRINFGLSDYSIDILSSVFLSSNLNDNA 334 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 A + LI +FMIV YG G++ SI L + LTL + ++L + +IA + Sbjct: 335 FQSAIIAGIVIFSLISIFMIVNYGLLGVLTTISIALYIYLTLLMFTVLRGEYSPVTIAAL 394 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 ++GIG++VD+N++ ER+++ S+ + + S+I D+NIT +I +LF+F Sbjct: 395 IIGIGISVDANVITYERLKKYVYSGDSLKKAFYSSNRLSLSSILDANITTIIIAFILFYF 454 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI-------DINPLSRFFL 533 G VRG++IT+ LSIL ++ + R + ++ + + L Sbjct: 455 GTKDVRGYSITLTLSILFTLLVMLVFSRFLSYMLVNTGLFEKRLYLLGLHKKYINHKTKL 514 Query: 534 IPDCIAIQFMRARFWGVGISI-LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 + + W V S+ I I G N I + ++++ Sbjct: 515 AKINENFNYYKNAKWFVLASLSFMVISLIVFASISGANKDIWAGLNRNIEFTGGINLNIA 574 Query: 593 VVRSN---LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV--------------- 634 R+ L + +I Q + + F ++ D Sbjct: 575 TDRNTANTLSLAEANEIKKQIVESSQTFNIKNVNSIIDIQKANEQGTNYVINIRSQQDLS 634 Query: 635 -LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693 + K I V T V + +L++ I+ I + +++Y+ R W ++ Sbjct: 635 SIVNDIKNIATRVNPFINVATFTVSSSEAAKLVQNAILATGIGFVGIVLYLLFRMNWTYS 694 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + AI LI D L F + ++ + VAA+L++IG S+ND VV +DR+R+ +K T Sbjct: 695 IAAIIALIHDFLMVLAFVVITRLQVSTIIVAAMLSIIGLSINDTVVTFDRIREKIKFDYT 754 Query: 754 SI-----SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + +++ +I +T+ RS+YTS ++V + +G ++ +F I M FGI + Sbjct: 755 GKILQKSDLKKIVNVAIADTIKRSIYTSFTTILAVSVILAFGNAINFTFNIVMLFGIAIG 814 Query: 809 ASSSIFIAAPILLFIYDWRAK 829 SS+FIA+ + + R K Sbjct: 815 VYSSVFIASWVWAKLEYIRQK 835 Score = 69.3 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 94/271 (34%), Gaps = 6/271 (2%) Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622 L+ + R V ++ L+ IS + + + Sbjct: 234 NLWNFVHVNNQAYTQIQDPVTNQPRLVANEFKKNVLDIQNKYLISVAQVNNPISTSEVII 293 Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 + + + +++ ++ + ++ + I+ I+ + I Sbjct: 294 NGNFTNTQAQELANRINFGLSDYSIDI--LSSVFLSSNLNDNAFQSAIIAGIVIFSLISI 351 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ + + + ++ L I TL F + E++ +AA++ IG SV+ V+ Y+ Sbjct: 352 FMIVNYGLL-GVLTTISIALYIYLTLLMFTVLRGEYSPVTIAALIIGIGISVDANVITYE 410 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R++K + + S + S +L + ++ I + +G + ++I + Sbjct: 411 RLKKYVY---SGDSLKKAFYSSNRLSLSSILDANITTIIIAFILFYFGTKDVRGYSITLT 467 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + + + + + R+ Sbjct: 468 LSILFTLLVMLVFSRFLSYMLVNTGLFEKRL 498 >gi|240141047|ref|YP_002965527.1| putative protein-export membrane protein, SecD/SecF family [Methylobacterium extorquens AM1] gi|240011024|gb|ACS42250.1| putative protein-export membrane protein, SecD/SecF family [Methylobacterium extorquens AM1] Length = 532 Score = 243 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 199/534 (37%), Positives = 306/534 (57%), Gaps = 12/534 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK--------NRISLGLDLRG 52 +R + + I IGL +A+P+F + + F +A+PK I LGLDL+G Sbjct: 2 LRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQG 61 Query: 53 GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKENI 111 GS ++LE+D+ D V + D++R L++ + +R I + L D+ + + Sbjct: 62 GSQILLEIDQPDLVRSMVTGLRDDVRRILREAAVSPEGGIRVINRGVELRIPDAAARAKV 121 Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171 K+ +N+ L + + I IVL++ I+ A+ Q++E++R+RI Sbjct: 122 MPKLRELAAPINNPLAAGGQTLTVNEAENGTIQIVLTEAGINDRTRRAVSQAIEVVRKRI 181 Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231 D G E +IQ+ G+ RIL+Q+PG Q+P L LG TAK+ F + + Sbjct: 182 DFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLAD---SPSGDVDML 238 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +D G + VE +V G L A FDP+TH+P+V F+ GA+RF + T +N+G Sbjct: 239 ASKDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVG 298 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + +A+VLD + +APVI AI G QI+GNFT++ A L+ +LRAG+LP KL +VE R Sbjct: 299 RRMAIVLDNVIQSAPVIRSAITGGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRV 358 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG LG DSI G A + L++ FM YG +G +A+ ++ ++V L L L+S+L AT Sbjct: 359 VGPGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIALIVHVGLILGLMSVLEAT 418 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 +TLP IAGIVL IG AVDSN+L+ ER+REE R +S+ +L GF RA++TI DSN T Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMA 478 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IA ++LFF G G V+GFA+ L IL ++ TA+++ R M+ + + K++ Sbjct: 479 IAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF 532 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 75/174 (43%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + R+ I G + +++ ++ +++ + F A LI+ + LG ++ Sbjct: 360 GPGLGRDSIEAGKMATLVAGGLVIAFMFATYG-TFGFIANIALIVHVGLILGLMSVLEAT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+RMR+ + S + + + ++ Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARG---GRSLVSALQAGFDRAFATIIDSNS 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I+ L + G + FA+ GI+ +++ + ++ Y+W A Sbjct: 476 TMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKA 529 >gi|114777998|ref|ZP_01452898.1| SecF protein [Mariprofundus ferrooxydans PV-1] gi|114551604|gb|EAU54157.1| SecF protein [Mariprofundus ferrooxydans PV-1] Length = 314 Score = 242 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 169/304 (55%), Gaps = 3/304 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 LI I I F+ R + IS L I S+ +L GLN+GIDF GG + V ++P Sbjct: 1 MQLIRPDININFIGKRKLAMAISALMIIISLGMLAIKGLNFGIDFTGGTLVEVKFDKPAK 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +RS + G+ Q F + L+R+Q + G+ + + Sbjct: 61 IADIRSAISPKGYGNAVIQEFGSPEEILIRVQNREGEKSSTISTAILDSLNAKFTADAVE 120 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ EL GI+ V+IS +A+LIY+ RF++ FALGA L+ DIT LG Sbjct: 121 MRRVEFVGPQVGDELTHAGIMAVLISMLAILIYVTFRFEFRFALGADAALLHDITIVLGL 180 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINE 767 FA+ G EF L +AA+LT+IGYS+ND +VV+DR+R+N + D + + +IN+ Sbjct: 181 FAITGKEFTLPVIAALLTVIGYSLNDTIVVFDRIRENFAANRKRKNPEDEGLIANNAINQ 240 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TLGR++ TS + V + ++GG VI FA + GI V SSIFIA+PI+L + + Sbjct: 241 TLGRTLMTSFTTLLVVFSLFLFGGEVIHDFAFALIAGIGVGTYSSIFIASPIMLSLAGYF 300 Query: 828 AKNA 831 NA Sbjct: 301 KGNA 304 >gi|302383726|ref|YP_003819549.1| protein-export membrane protein SecD [Brevundimonas subvibrioides ATCC 15264] gi|302194354|gb|ADL01926.1| protein-export membrane protein SecD [Brevundimonas subvibrioides ATCC 15264] Length = 534 Score = 242 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 193/529 (36%), Positives = 306/529 (57%), Gaps = 11/529 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W VI+ GLL+ALPN L S P MPKN ++LGLDL+GGS+L+LEVD D Sbjct: 5 SRWKVIVLIAALVFGLLLALPNVLSPSQRAALPGFMPKNTLNLGLDLQGGSYLLLEVDVD 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 + +++R L++ GI + + ++ AD E ++ + Sbjct: 65 AMRTKRIDNLIEDIRVGLREAGIATNQITRESGGAVVTLADPSQAEAAYQELRK---LIG 121 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + ++ + + +Q +D + + A++QS+E++R+RID +G E +I R Sbjct: 122 APGANGAAERAATRLSDGRVRLAFTQQTLDTMGATAVDQSIEVVRRRIDSLGTREPSITR 181 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------DSD 237 G+ RI++Q PGE DP+ L +++G TA+++F V NS + + G D Sbjct: 182 QGAERIVVQAPGESDPAALERVIGQTAQLTFQMVDTENSIQDALAGRVPPDAQLLVGDDG 241 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 YLV+ ++ +SG +L A + D +P + FD GARRF E T NIGKP A++ Sbjct: 242 QTPYLVKKRILVSGENLTKAEVSADQSG-RPAIGFRFDGQGARRFGEATAANIGKPFAII 300 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+V++AP IN AI G I G FTI A L +L G+LP L + E R V A+LG Sbjct: 301 LDGKVISAPTINGAILGGSGIIEGTFTIAQASELVNLLNGGALPAPLKVEERRTVTAELG 360 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPS 416 +D++ G + + G ++IV FMI+ YG +G ++ + LN +L +A +SL ATLTLP Sbjct: 361 ADAVQNGKISTIIGFIIIVAFMILAYGFLFGGISVIGLVLNGLLIIAAMSLTQATLTLPG 420 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAG+VL +AVD+N+L+ ERIR+E R +SV SLD GF++A TI D+N+T L+A + Sbjct: 421 IAGLVLTFAVAVDANVLIYERIRDEARAGRSVIASLDAGFNKAMGTIIDANLTTLVAAAI 480 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +F FG G VRGFA T+ + + S+F+++ + + ++ + ++ K K++ I Sbjct: 481 MFIFGAGPVRGFAWTLSIGVFTSVFSSVLVAQVLLAYWLKTTKSKTLPI 529 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 65/150 (43%), Gaps = 3/150 (2%) Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 + ++ + + + F ++ L+L+ + +L L +A ++ +V+ V++ Sbjct: 379 VAFMILAYGFLFGGISVIGLVLNGLLIIAAMSLTQATLTLPGIAGLVLTFAVAVDANVLI 438 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 Y+R+R + S +D N+ +G + ++ ++ M ++G + FA Sbjct: 439 YERIRDEARA---GRSVIASLDAGFNKAMGTIIDANLTTLVAAAIMFIFGAGPVRGFAWT 495 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ G+ + SS+ +A +L + Sbjct: 496 LSIGVFTSVFSSVLVAQVLLAYWLKTTKSK 525 >gi|218532484|ref|YP_002423300.1| protein-export membrane protein SecD [Methylobacterium chloromethanicum CM4] gi|218524787|gb|ACK85372.1| protein-export membrane protein SecD [Methylobacterium chloromethanicum CM4] Length = 532 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 198/534 (37%), Positives = 306/534 (57%), Gaps = 12/534 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK--------NRISLGLDLRG 52 +R + + I IGL +A+P+F + + F +A+PK I LGLDL+G Sbjct: 2 LRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQG 61 Query: 53 GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKENI 111 GS ++LE+D+ D V + D++R L++ + +R I + L D+ + + Sbjct: 62 GSQILLEIDQPDLVRSMVTGLRDDVRRILREAAVSPDGGIRVINRGVELRIPDAAARAKV 121 Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171 K+ +N+ L + + I +VL++ I+ A+ Q++E++R+RI Sbjct: 122 MPKLRELAAPINNPLAAGGQTLTVNEAENGTIQLVLTEAGINDRTRRAVSQAIEVVRKRI 181 Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231 D G E +IQ+ G+ RIL+Q+PG Q+P L LG TAK+ F + + Sbjct: 182 DFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLAD---SPSGDVDML 238 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +D G + VE +V G L A FDP+TH+P+V F+ GA+RF + T +N+G Sbjct: 239 TSKDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVG 298 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + +A+VLD + +APVI AI G QI+GNFT++ A L+ +LRAG+LP KL +VE R Sbjct: 299 RRMAIVLDNVIQSAPVIRSAITGGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRV 358 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG LG DSI G A + L++ FM YG +G +A+ ++ ++V L L L+S+L AT Sbjct: 359 VGPGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIALIVHVGLILGLMSVLEAT 418 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 +TLP IAGIVL IG AVDSN+L+ ER+REE R +S+ +L GF RA++TI DSN T Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMA 478 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IA ++LFF G G V+GFA+ L IL ++ TA+++ R M+ + + K++ Sbjct: 479 IAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF 532 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 75/174 (43%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + R+ I G + +++ ++ +++ + F A LI+ + LG ++ Sbjct: 360 GPGLGRDSIEAGKMATLVAGGLVIAFMFATYG-TFGFIANIALIVHVGLILGLMSVLEAT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+RMR+ + S + + + ++ Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARG---GRSLVSALQAGFDRAFATIIDSNS 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I+ L + G + FA+ GI+ +++ + ++ Y+W A Sbjct: 476 TMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKA 529 >gi|163853625|ref|YP_001641668.1| protein-export membrane protein SecD [Methylobacterium extorquens PA1] gi|163665230|gb|ABY32597.1| protein-export membrane protein SecD [Methylobacterium extorquens PA1] Length = 532 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 198/534 (37%), Positives = 306/534 (57%), Gaps = 12/534 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK--------NRISLGLDLRG 52 +R + + I IGL +A+P+F + + F +A+PK I LGLDL+G Sbjct: 2 LRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQG 61 Query: 53 GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKENI 111 GS ++LE+D+ D V + D++R L++ + +R I + L D+ + + Sbjct: 62 GSQILLEIDQPDLVRSMVTGLRDDVRRILREAAVSPDGGIRVINRGVELRIPDAAARAKV 121 Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171 K+ +N+ L + + I +VL++ I+ A+ Q++E++R+RI Sbjct: 122 MPKLRELAAPINNPLAAGGQTLTVNEAENGTIQLVLTEAGINDRTRRAVSQAIEVVRKRI 181 Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231 D G E +IQ+ G+ RIL+Q+PG Q+P L LG TAK+ F + + Sbjct: 182 DFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLAD---SPSGDVDML 238 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +D G + VE +V G L A FDP+TH+P+V F+ GA+RF + T +N+G Sbjct: 239 ASKDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVG 298 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + +A+VLD + +APVI AI G QI+GNFT++ A L+ +LRAG+LP KL +VE R Sbjct: 299 RRMAIVLDNVIQSAPVIRSAITGGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRV 358 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG LG DSI G A + L++ FM YG +G +A+ ++ ++V L L L+S+L AT Sbjct: 359 VGPGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIALIVHVGLILGLMSVLEAT 418 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 +TLP IAGIVL IG AVDSN+L+ ER+REE R +S+ +L GF RA++TI DSN T Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMA 478 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IA ++LFF G G V+GFA+ L IL ++ TA+++ R M+ + + K++ Sbjct: 479 IAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF 532 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 75/174 (43%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + R+ I G + +++ ++ +++ + F A LI+ + LG ++ Sbjct: 360 GPGLGRDSIEAGKMATLVAGGLVIAFMFATYG-TFGFIANIALIVHVGLILGLMSVLEAT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+RMR+ + S + + + ++ Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARG---GRSLVSALQAGFDRAFATIIDSNS 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I+ L + G + FA+ GI+ +++ + ++ Y+W A Sbjct: 476 TMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKA 529 >gi|170748694|ref|YP_001754954.1| protein-export membrane protein SecD [Methylobacterium radiotolerans JCM 2831] gi|170655216|gb|ACB24271.1| protein-export membrane protein SecD [Methylobacterium radiotolerans JCM 2831] Length = 534 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 202/536 (37%), Positives = 307/536 (57%), Gaps = 14/536 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSM--------LDRFPSAM-PKNRISLGLDLR 51 +R + +I + +GL +A+P+F FPS + P I LGLDL+ Sbjct: 2 LRFSRAKIIATLGLILVGLTLAVPSFFSPEQRKSFVAGLPSWFPSWVVPTRAIVLGLDLQ 61 Query: 52 GGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKEN 110 GGS L+LEVD+++ + + D++R L++E + + +Q + + D+ + Sbjct: 62 GGSQLLLEVDQNELIASQAKALRDDVRRVLQQENVRADGGIGLLQRGVQVKIDDAAARAK 121 Query: 111 IADKVTLFLQGVNSKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169 + K+ Q + + L + L + I + L+ I A+ Q +E+IR+ Sbjct: 122 VLPKLQELSQPITTSLGQTAARTLDVSEQPGGVIRLTLTDAGITDRTRRAVSQGIEVIRR 181 Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 R+D G +E +IQ+ G+ RILIQ+PGEQ+P RL +LLG+TAK+ F + Sbjct: 182 RLDSTGTTEPSIQQQGADRILIQVPGEQNPERLEKLLGSTAKLEFRMLAD---SPSGDVD 238 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 + +D G + VE +V G L A FD +TH+P+V F+ GA+RF + T +N Sbjct: 239 MLPSKDEKGAKVPVERRVMADGGELTDAQPAFDQQTHEPMVSFKFNLRGAQRFGQATSEN 298 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 IG+ +A+VLD V++APVI AI G QI+GNFT++ A LA +LRAG+LP K +VE Sbjct: 299 IGRRMAIVLDNEVVSAPVIRSAITGGSGQITGNFTVQQANDLAVLLRAGALPAKFTVVER 358 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R VG LG DSI G A + L+V FM YG +G +A+ ++ ++V L L L+S+L Sbjct: 359 RVVGPGLGRDSIEAGKLATLVAAGLVVAFMFATYGTFGFIANIALMVHVGLILGLMSVLE 418 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 AT+TLP IAGIVL IG AVDSN+L+ ER+REE R +S+ +L GF RA++TI DSN T Sbjct: 419 ATMTLPGIAGIVLTIGTAVDSNVLIYERMREEQRAGRSLISALQAGFDRAFATIIDSNST 478 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IA ++LFF G G V+GFA+ L IL ++ TA+++ R M+ + K++ Sbjct: 479 MAIAALILFFLGSGPVKGFAVVFILGILTTVITAVTLTRMMIAVWYNTFRPKTLPF 534 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 74/173 (42%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + R+ I G + +++A ++ +++ + F A L++ + LG ++ Sbjct: 362 GPGLGRDSIEAGKLATLVAAGLVVAFMFATYG-TFGFIANIALMVHVGLILGLMSVLEAT 420 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+RMR+ + S + + + ++ Sbjct: 421 MTLPGIAGIVLTIGTAVDSNVLIYERMREEQRA---GRSLISALQAGFDRAFATIIDSNS 477 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 I+ L + G + FA+ GI+ +++ + ++ Y+ Sbjct: 478 TMAIAALILFFLGSGPVKGFAVVFILGILTTVITAVTLTRMMIAVWYNTFRPK 530 >gi|304372944|ref|YP_003856153.1| Protein-export membrane protein [Mycoplasma hyorhinis HUB-1] gi|304309135|gb|ADM21615.1| Protein-export membrane protein [Mycoplasma hyorhinis HUB-1] Length = 860 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 154/862 (17%), Positives = 329/862 (38%), Gaps = 74/862 (8%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV--- 60 N W + + ++ + Q + I+ ++ GG+ ++++V Sbjct: 12 NNWKRWFIAFLSFFTIVFVISYTSQQYI---------SKNINKSIEYGGGAEVLVQVKTL 62 Query: 61 DEDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLF 118 D ++ +E+ + L G+ S+ +I +S + + + ++ Sbjct: 63 DNKAPSQSLVRTADEEIFTRLTGGSGLNGTSVSIEGEGRIRISRNNITDNKKLDAFISEI 122 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + + D K L V + +++ EI + ++ Sbjct: 123 VTKPLLTITDDENKPLFYDGKF--------------VTNGSLDYGSEINWAPPFKSESAQ 168 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + + +Q+ + + L + ++ F ++ Sbjct: 169 ARPNPNNPSQNEVQIELKDKDAEL----------------EWSKATDYISKKPFGKNRIL 212 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 + + ++ N + A + K Sbjct: 213 IWSNISGLINLAKTQYPNEWKNAKENIFNFIHVNENPTP-APLQNNQRASPVLKQYQFDA 271 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 +++ + QA+ I+GNF+ A LA + G+ KL+ + V Sbjct: 272 KKYLISDARVQQALNGSSFVINGNFSSAEAKQLALNINFGTANYKLDFLSASFVSQTKSD 331 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 + A++ +V+I LFMIV YG G+++ S+ L + LTL +++ + +IA Sbjct: 332 SAFTSAWIAVIVSIVVISLFMIVNYGLLGVLSTISLALYIFLTLLFFTVVRGEYSPITIA 391 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 +++GIG+ VD+NI+ E ++ + +V S + STI DSNIT LIA ++LF Sbjct: 392 ALIIGIGMNVDANIINFEILKSKIYSGHTVNKSNAYANKSSLSTILDSNITTLIAGIILF 451 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSID 524 FFG ++ F+IT+ SI+ ++ + + M + I+ K +K + Sbjct: 452 FFGTKNIKSFSITLIFSIIFTLLVIMLFTKLMTSLVLKTGFFDKRVYLLGIKPKYVKKYE 511 Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQL 581 +S ++ R + I L + N I+F GG + Sbjct: 512 RGYVSILEKPDYLALNKYTRWIPLVMFILALLLFAIFAGINHSVAGGLNLSIEFSGGTNI 571 Query: 582 -------GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + LES I + + Q + + + Sbjct: 572 LIENQDPTYNLIDKTRGEEIIKFLESQGIKNNASQIVMHPLDAQNSVFNIEIKTQQDLTS 631 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + + T + + +R L+ I+ V+++ + + + +IRF+W F+L Sbjct: 632 IIQNLNTTLSSKFSNLKFITYSISNEEARSLVLNAILSVVVAIVFVTTFAFIRFRWTFSL 691 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 I +L+ ++ + F +F I+ + T V A+L++IGYS+ND +V++D++++ + + Sbjct: 692 AIIVSLLFNVLMVVFIFIIFHIKLSPTIVVALLSIIGYSINDIIVIFDKIKEIFRELPYT 751 Query: 755 -----ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809 + + ++I ET+ RS+ TS++ ++ + ++ S+ F+ M G+V Sbjct: 752 EVSDQARIKRIATQAIKETIKRSILTSLSTIFAIFVLMIFYNSIDILFSFAMFVGVVFGT 811 Query: 810 SSSIFIAAPILLFIYDWRAKNA 831 SS+FIA I + + R K Sbjct: 812 FSSLFIATTIWVKLETKRNKRK 833 >gi|254563561|ref|YP_003070656.1| hypothetical protein METDI5231 [Methylobacterium extorquens DM4] gi|254270839|emb|CAX26844.1| putative protein-export membrane protein, SecD/SecF family [Methylobacterium extorquens DM4] Length = 532 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 198/534 (37%), Positives = 305/534 (57%), Gaps = 12/534 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK--------NRISLGLDLRG 52 +R + + I IGL +A+P+F + + F +A+PK I LGLDL+G Sbjct: 2 LRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQG 61 Query: 53 GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKENI 111 GS ++LE+D+ D V + D++R L++ + +R I + L D + + Sbjct: 62 GSQILLEIDQPDLVRSMVTGLRDDVRRILREAAVSPDGGIRVINRGVELRIPDVAARAKV 121 Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171 K+ +N+ L + + I +VL++ I+ A+ Q++E++R+RI Sbjct: 122 MPKLRELAAPINNPLAAGGQTLTVNEAENGTIQLVLTEAGINDRTRRAVSQAIEVVRKRI 181 Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231 D G E +IQ+ G+ RIL+Q+PG Q+P L LG TAK+ F + + Sbjct: 182 DFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLAD---SPSGDVDML 238 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +D G + VE +V G L A FDP+TH+P+V F+ GA+RF + T +N+G Sbjct: 239 ASKDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVG 298 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + +A+VLD + +APVI AI G QI+GNFT++ A L+ +LRAG+LP KL +VE R Sbjct: 299 RRMAIVLDNVIQSAPVIRSAITGGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRV 358 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG LG DSI G A + L++ FM YG +G +A+ ++ ++V L L L+S+L AT Sbjct: 359 VGPGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIALIVHVGLILGLMSVLEAT 418 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 +TLP IAGIVL IG AVDSN+L+ ER+REE R +S+ +L GF RA++TI DSN T Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMA 478 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IA ++LFF G G V+GFA+ L IL ++ TA+++ R M+ + + K++ Sbjct: 479 IAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF 532 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 75/174 (43%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + R+ I G + +++ ++ +++ + F A LI+ + LG ++ Sbjct: 360 GPGLGRDSIEAGKMATLVAGGLVIAFMFATYG-TFGFIANIALIVHVGLILGLMSVLEAT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+RMR+ + S + + + ++ Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARG---GRSLVSALQAGFDRAFATIIDSNS 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I+ L + G + FA+ GI+ +++ + ++ Y+W A Sbjct: 476 TMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKA 529 >gi|110679780|ref|YP_682787.1| preprotein translocase subunit SecD [Roseobacter denitrificans OCh 114] gi|109455896|gb|ABG32101.1| protein-export membrane protein SecD, putative [Roseobacter denitrificans OCh 114] Length = 553 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 195/547 (35%), Positives = 300/547 (54%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSM----------------------LDRFPSAMPKNR 43 W I + C GL +A+PN ++ ++P MP Sbjct: 7 WKRITILLTCVAGLWLAMPNLFYTTVEQHNDAVQAIELGADTPENNALRAQWPEWMPSGL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI---QNKITL 100 ++LGLDLRGG+HL+ EV D ++ Y E+R L+ E + ++R +++ + Sbjct: 67 VNLGLDLRGGAHLLAEVRVADVYANRMESYWPEIRDALRPERETIGTIRLQPSPSDEVHV 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + V + + + V + + + +S+ + Sbjct: 127 RISQPEGMPRALEIVRGLARPIQTITGVGANDIEV-RAEGDLLIVTMSEAEKLASDERTV 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217 +QS+EIIR+RID++G E TIQR GS RILIQ+PG + L+ ++GTTA+++F+ V Sbjct: 186 QQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKDIIGTTAQLTFNPVVSR 245 Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 N+ G + D G Y +E ++G L A FD +P V+ F+ Sbjct: 246 GSDANASPGLGNKLVPSLDEPGTYYTIEAAAVVTGEELVDAQPAFDQNG-RPAVNFRFNT 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR+F + T +NIG P A+VLD V++AP I IP G I+G FT+E + LA +LR Sbjct: 305 TGARKFGDYTAENIGSPFAIVLDNEVVSAPTIQSHIPGGSGIITGRFTVEESTNLAILLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L+ +EER +G +LG DSI G A + + +++FM + YG +GL A+ ++ + Sbjct: 365 AGALPAGLDFLEERTIGPELGQDSIDAGKIATIVAFLGVLVFMFLSYGMFGLFANVALII 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 N+ L LLS++G TLTLP IAGIVL +G+AVD+N+LV ERIREE + ++ ++++G+ Sbjct: 425 NIGLIFGLLSMIGGTLTLPGIAGIVLTVGMAVDANVLVFERIREELKTSKGPARAIELGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 +A S I D+NIT I V+LF G G VRGFAIT+GL IL S+FTAI + R M++ Sbjct: 485 EKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVIWFE 544 Query: 517 YKKMKSI 523 K+ K I Sbjct: 545 RKRPKKI 551 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 90/176 (51%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + I++ + +L+++++ + F L A LI++I G ++ G Sbjct: 379 TIGPELGQDSIDAGKIATIVAFLGVLVFMFLSYGM-FGLFANVALIINIGLIFGLLSMIG 437 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V+V++R+R+ +K TS I+ + L + Sbjct: 438 GTLTLPGIAGIVLTVGMAVDANVLVFERIREELK---TSKGPARAIELGYEKALSAILDA 494 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ FI+ + + G + FAI + GI+ + ++IF+ +++ ++ + Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVIWFERKRPKK 550 >gi|158522453|ref|YP_001530323.1| protein-export membrane protein SecD [Desulfococcus oleovorans Hxd3] gi|158511279|gb|ABW68246.1| protein-export membrane protein SecD [Desulfococcus oleovorans Hxd3] Length = 524 Score = 241 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 191/539 (35%), Positives = 288/539 (53%), Gaps = 29/539 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+N W + + L+ LP P P+ I+LGLDL+GG HL+LEV Sbjct: 1 MKNFQWKQAITLAVLVAALIYVLPTI--------NPEWWPRKTINLGLDLQGGMHLILEV 52 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + V + +L L+KE + + KI++ E + Sbjct: 53 ETEKAVEAQISGIGRDLEETLRKERVRHTDVTAKGQKISVLARGEENIERFKQVLDKDFA 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 G+ + E + L + + + A+EQ++E IR RIDQ G+SE Sbjct: 113 GL-------AIVSSSRRDNTLEQVLGLPDDEVAHLKKMAVEQALETIRNRIDQFGVSEPV 165 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD----- 235 I G +IL+QLPG DP R + L+G TA + F V N + G Sbjct: 166 IHIQGRRQILVQLPGVTDPQRAKDLIGKTALLEFRLVDEENDVAKAVRGQVPPGSELLYE 225 Query: 236 ---------SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 + + L++ ++G L+ A D + ++P V I+F+ GA F ++T Sbjct: 226 VSTDPDTGRTIKSPLLIKRGTPLTGADLSDARVQIDAQYNEPYVSITFNRKGANIFAKIT 285 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 +N+ K LA+VLD + +APVI I G A+I+G+F+++ A LA +LRAG+LP + I Sbjct: 286 EENLKKRLAIVLDNHIHSAPVIQDRITGGAARITGSFSMDEAHDLAIVLRAGALPAPVKI 345 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 +EER VG LG +SI KG ++ G +++VLFM Y K GL+AD ++ N++L A L+ Sbjct: 346 LEERTVGPSLGKESIDKGLMSMYIGGLIVVLFMATYYRKAGLIADVALVFNILLIAAGLA 405 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LGATLTLP IAGI+L IG+AVD+N+++ ERIREE R + S+ GF RA TI D+ Sbjct: 406 ALGATLTLPGIAGIILTIGMAVDANVIIFERIREEIRTGKPPRASVAAGFDRAALTILDA 465 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 NIT LIA VVLF FG G V+GFA+T+ L ++ S+FTA+ + R + I+ +K+ + I Sbjct: 466 NITTLIAAVVLFQFGTGPVKGFAVTLSLGVMASLFTALVVSRQIFDLILTRRKVTHLSI 524 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 91/238 (38%), Gaps = 4/238 (1%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ + + + G + + + Sbjct: 285 TEENLKKRLAIVLDNHIHSAPVIQDRITGGAARITGSFSMDEAHDLAIVLRAGALPAPVK 344 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I VGP + +E I KG++ + I + +++++ ++ L A L+ +I Sbjct: 345 ILEERTVGPSLGKESIDKGLMSMYIGGLIVVLFMATYYR-KAGLIADVALVFNILLIAAG 403 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 A G L +A ++ IG +V+ V++++R+R+ ++ T R + + Sbjct: 404 LAALGATLTLPGIAGIILTIGMAVDANVIIFERIREEIR---TGKPPRASVAAGFDRAAL 460 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ I+ + + +G + FA+ ++ G++ + +++ ++ I I R Sbjct: 461 TILDANITTLIAAVVLFQFGTGPVKGFAVTLSLGVMASLFTALVVSRQIFDLILTRRK 518 >gi|330723456|gb|AEC45826.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma hyorhinis MCLD] Length = 860 Score = 241 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 155/862 (17%), Positives = 334/862 (38%), Gaps = 74/862 (8%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV--- 60 N W + + ++ + +F Q + I+ ++ GG+ ++++V Sbjct: 12 NNWKRWFIAFLSFFTIVFVI-SFTSQQYIS--------KNINKSIEYGGGAEVLVQVKTL 62 Query: 61 DEDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLF 118 D ++ +E+ + L G+ S+ +I +S + + + ++ Sbjct: 63 DNKAPSQSLVRTADEEIFTRLTGGSGLNGTSVSIEGEGRIRISRNNITDNKKLDAFISEI 122 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + + D K L V + +++ EI + ++ Sbjct: 123 VTKPLLTITDDENKPLFYDGKF--------------VTNGSLDYGSEINWAPPFKSESAQ 168 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + + +Q+ + + L + ++ F ++ Sbjct: 169 ARPNPNNPSQNEVQIELKDKDAEL----------------EWSKATDYISKKPFGKNRIL 212 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 + + ++ N + ++ + A + K Sbjct: 213 IWSNISGLINLAKTQYPNEWKNAKENIFNFI-HVNENSTPAPLQNNQPASPVLKQYQFDA 271 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 +++ + QA+ I+GNF+ A LA + G+ KL+ + V Sbjct: 272 KKYLISDARVQQALNGSSFVINGNFSSAEAKQLALNINFGTANYKLDFLSASFVSQTKSD 331 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 + A++ +V+I LFMIV YG G+++ S+ L + LTL +++ + +IA Sbjct: 332 SAFTSAWIAVIVSIVVISLFMIVNYGLLGVLSTISLALYIFLTLLFFTVVRGEYSPITIA 391 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 +++GIG+ VD+NI+ E ++ + +V S + STI DSNIT LIA ++LF Sbjct: 392 ALIIGIGMNVDANIINFEILKSKIYSGHTVNKSNAYANKSSLSTILDSNITTLIAGIILF 451 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSID 524 FFG ++ F+IT+ SI+ ++ + + M + I+ K +K + Sbjct: 452 FFGTKNIKSFSITLIFSIIFTLLVIMLFTKLMTSLVLKTGFFDKRVYLLGIKPKYVKKYE 511 Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQL 581 +S ++ R + I L + N I+F GG + Sbjct: 512 RGYVSILEKPDYLALNKYTRWIPLVMFILALLLFAIFAGINHSVAGGLNLSIEFSGGTNI 571 Query: 582 -------GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + LES I + + Q + + + Sbjct: 572 LIENQDPTYNLIDKTRGEEIIKFLESQGIKNNASQIVMHPLDAQNSVFNIEIKTQQDLTS 631 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + + T + + +R L+ I+ V+++ + + + +IRF+W F+L Sbjct: 632 IIQNLNTTLSSKFSNLKFITYSISNEEARSLVLNAILSVVVAIVFVTTFAFIRFRWTFSL 691 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 I +L+ ++ + F +F I+ + T V A+L++IGYS+ND +V++D++++ + + Sbjct: 692 AIIVSLLFNVLMVVFIFIIFHIKLSPTIVVALLSIIGYSINDIIVIFDKIKEIFRELPYT 751 Query: 755 -----ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809 + + ++I ET+ RS+ TS++ ++ + ++ S+ F+ M G+V Sbjct: 752 EVSDQARIKRIATQAIKETIKRSILTSLSTIFAIFVLMIFYNSIDILFSFAMFVGVVFGT 811 Query: 810 SSSIFIAAPILLFIYDWRAKNA 831 SS+FIA I + + R K Sbjct: 812 FSSLFIATTIWVKLETKRNKRK 833 >gi|84502989|ref|ZP_01001091.1| protein-export membrane protein SecD [Oceanicola batsensis HTCC2597] gi|84388734|gb|EAQ01605.1| protein-export membrane protein SecD [Oceanicola batsensis HTCC2597] Length = 543 Score = 241 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 197/537 (36%), Positives = 305/537 (56%), Gaps = 21/537 (3%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ------------SMLDRFPSAMPKNRISLGLDLRGG 53 W IL +GLL+ALPN + + + +P ++LGLDLRGG Sbjct: 7 WKRILIWGTVALGLLLALPNAFYNRVESYNDAVAVGAPAEGWVDWLPSGLVNLGLDLRGG 66 Query: 54 SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITLSFADSRFKEN 110 +HL+ EV D ++ E+R+ L+ V ++R Q +++ + ++ Sbjct: 67 AHLLAEVRVGDVYETRMKGLWPEVRNRLRAARDTVGTIRLQQGPADELRVRISNPEAIGE 126 Query: 111 IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170 V + V S L + ++ VT+ + + LS+ + QS+EIIR+R Sbjct: 127 AERIVEEIARPVVS-LTGAGQSDIEVTSEGDVLIVRLSEAERLATDDRTVRQSLEIIRRR 185 Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV----LPNNSKKGF 226 ID++G E TIQR G+ RILIQ+PG + L++++GTTA+++F V + + G Sbjct: 186 IDEVGTREPTIQRQGTDRILIQVPGVGSAAELKEIIGTTAQLTFQPVVRRTTDDQTVAGP 245 Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 + D +G Y++ED +SG L A +FD V+ F+ GAR+F + T Sbjct: 246 GNELLPAMDEEGTFYVLEDTPVVSGEELVDAQPSFDQNGMPA-VNFRFNPSGARKFGDYT 304 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 +NIG P A+VLD V++APVI I G I+GNFT+E + LA +LRAG+LP L+ Sbjct: 305 ANNIGNPFAIVLDNEVISAPVIQSHIAGGSGIITGNFTVEESTNLAVLLRAGALPAGLDF 364 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 +EER +G +LG+DSI G A V L ++ FM+ YG +G+ A+ ++ +N+ L LLS Sbjct: 365 LEERTIGPELGADSIEAGRIASVVALAAVLFFMVASYGLFGVFANIALLVNIALVFGLLS 424 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 L+G TLTLP IAGIVL IG+AVD+N+LV ERIREE + + ++++G+ +A S I D+ Sbjct: 425 LIGGTLTLPGIAGIVLTIGMAVDANVLVFERIREEQKDRRGPARAIELGYEKALSAILDA 484 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 NIT I ++L+ G G VRGFAIT+GL IL S+FTA + R +++ ++ K++ Sbjct: 485 NITTFITALILYVMGSGPVRGFAITLGLGILTSVFTAFFVTRLLVVIWFDRRRPKTL 541 Score = 151 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 83/175 (47%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ + I G + +++ A+L ++ + F + A L+++I G +L G Sbjct: 369 TIGPELGADSIEAGRIASVVALAAVLFFMVASYGL-FGVFANIALLVNIALVFGLLSLIG 427 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V+V++R+R+ K I+ + L + Sbjct: 428 GTLTLPGIAGIVLTIGMAVDANVLVFERIREEQKD---RRGPARAIELGYEKALSAILDA 484 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ L + V G + FAI + GI+ + ++ F+ +++ +D R Sbjct: 485 NITTFITALILYVMGSGPVRGFAITLGLGILTSVFTAFFVTRLLVVIWFDRRRPK 539 >gi|288940929|ref|YP_003443169.1| protein-export membrane protein SecF [Allochromatium vinosum DSM 180] gi|288896301|gb|ADC62137.1| protein-export membrane protein SecF [Allochromatium vinosum DSM 180] Length = 316 Score = 241 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 99/290 (34%), Positives = 165/290 (56%), Gaps = 2/290 (0%) Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 I FMR R +S I + + G ++G+DF GG + + +P +LS VR+ L Sbjct: 11 NIDFMRQRKAAAWLSGAVLIVCLLSIVFRGFDFGLDFTGGTVIELGYAQPTELSDVRTAL 70 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI-QNTEIV 657 E+ +G + Q F + L+RL Q G+ A ++ + V ++ + E V Sbjct: 71 ETEGLGSATIQYFGSRTDILIRLAPQDGEEEASAQLSDRVFAALSRAAEGQVELRRVEFV 130 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G + V+ S I +LIY+ +RF+W FA+GA+ LI D+ T+G F+L I Sbjct: 131 GPQVGEELREQGGLAVLFSLIGILIYVALRFEWRFAVGAVVALIHDVLFTVGVFSLLQIP 190 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +V++DR+R+N + + +I+ SINETL R++ TS Sbjct: 191 FDLTVLAAVLAVIGYSLNDTIVIFDRVRENFRRMRKG-TVIGIINNSINETLSRTIVTSG 249 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + ++ + GG I FA+ + GI+V S+I++A I++++ R Sbjct: 250 TTLLVLVALYFLGGETINGFALALIIGILVGTYSTIYVATAIVVWLGLSR 299 >gi|159044408|ref|YP_001533202.1| preprotein translocase subunit SecD [Dinoroseobacter shibae DFL 12] gi|157912168|gb|ABV93601.1| protein-export membrane protein SecD [Dinoroseobacter shibae DFL 12] Length = 554 Score = 241 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 194/553 (35%), Positives = 303/553 (54%), Gaps = 32/553 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ-----------------------SMLDRFPS 37 ++ W +L + IGL ALPN + L ++P+ Sbjct: 2 LQIPLWKRVLIWGVVLIGLSYALPNAFYSRVETHNDAAALVEAGAAETGEIAADLGQWPA 61 Query: 38 AMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-- 95 +P + ++LGLDLRGG+HL+ EV D + + E+R L+ V ++R+ Sbjct: 62 FLPSSLVNLGLDLRGGAHLLAEVQVADVYADRMDAFWPEVRDALRDARDTVGTIRRQDSP 121 Query: 96 -NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154 +++ + ++ V Q + S V + ++ I LS+ Sbjct: 122 PDQLRVRISNPEEITRAVAIVRGLAQPIVSFTGVGQDDIEVS-FEGADLIIELSEAEKQA 180 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 ++QS+EIIR+R+D+ G E TIQR G R+LIQ+PG S L++L+G TA+++F Sbjct: 181 TDDRTLQQSLEIIRRRVDEAGTREPTIQRQGEDRVLIQVPGIASASELKELIGQTARLTF 240 Query: 215 HKVLPNNSKKGFMFG----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 + V+ S G V D Y++E +SG L A +FD +P V Sbjct: 241 NPVVSRTSDPDAPPGPRNIVLPSIDEPNTYYVLEQTPVVSGDQLTDAQPSFDQNG-RPAV 299 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 + F+ GAR F + T +NIG P A+VLD V++APVI IP G I+GNF++E + Sbjct: 300 NFRFNPTGARLFGDYTAENIGSPFAIVLDNEVISAPVIQSHIPGGSGIITGNFSVEESTQ 359 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LA +LRAG+LP ++ +EER +G +LG DSI G A + L +++FM++ YG +G+ A Sbjct: 360 LAVLLRAGALPAEMIFLEERTIGPELGQDSIEAGALACLVALGAVLVFMMLSYGLFGVFA 419 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + ++ LN+ L +LSL+GATLTLP IAGIVL IG+AVD+N+LV ERIREE + + Sbjct: 420 NIALLLNIALIFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKTARGPAR 479 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 ++++G+ +A S I D+N T I +LF G G VRGFA+T+G+ I+ S+FTAI + R + Sbjct: 480 AIELGYEKALSAIVDANTTTFIVAAILFTLGAGPVRGFAVTLGIGIVTSVFTAIFVTRLL 539 Query: 511 MIFIIRYKKMKSI 523 ++ ++ K I Sbjct: 540 IVLWFERRRPKQI 552 Score = 159 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 92/209 (44%), Gaps = 4/209 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 G+ + V + + +GP++ ++ I G + +++ A+L+ Sbjct: 347 IITGNFSVEESTQLAVLLRAGALPAEMIFLEERTIGPELGQDSIEAGALACLVALGAVLV 406 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ + + F + A L+L+I G +L G L +A ++ IG +V+ V+V++ Sbjct: 407 FMMLSYGL-FGVFANIALLLNIALIFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFE 465 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ +K T+ I+ + L V + FI + G + FA+ + Sbjct: 466 RIREELK---TARGPARAIELGYEKALSAIVDANTTTFIVAAILFTLGAGPVRGFAVTLG 522 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831 GIV + ++IF+ +++ ++ R Sbjct: 523 IGIVTSVFTAIFVTRLLIVLWFERRRPKQ 551 >gi|163731952|ref|ZP_02139399.1| protein-export membrane protein SecD, putative [Roseobacter litoralis Och 149] gi|161395406|gb|EDQ19728.1| protein-export membrane protein SecD, putative [Roseobacter litoralis Och 149] Length = 553 Score = 241 bits (613), Expect = 6e-61, Method: Composition-based stats. Identities = 197/547 (36%), Positives = 299/547 (54%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSM----------------------LDRFPSAMPKNR 43 W I + C GL +A+PNF ++ +P MP Sbjct: 7 WKRITILLTCVAGLWLAMPNFFYTTVEQHNDAVQAIELGADTPENAALRAGWPEWMPSGL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI---QNKITL 100 ++LGLDLRGG+HL+ EV D ++ Y E+R L+ E + ++R +++ + Sbjct: 67 VNLGLDLRGGAHLLAEVRVADVYANRMESYWPEIRDSLRPERETIGTIRLQPSPSDEVHV 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + V + + + V + + + +S+ + Sbjct: 127 RISQPEGMPRALEIVRGLARPIQTITGVGANDIEV-RAEGDLLIVTMSEAEKLASDERTV 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217 +QS+EIIR+RID++G E TIQR GS RILIQ+PG + L+ ++GTTA+++F+ V Sbjct: 186 QQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKDIIGTTAQLTFNPVVSR 245 Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 N+ G + D G Y +E ++G L A FD +P V+ F+ Sbjct: 246 GSDANASPGLGNKLVPSVDEPGAFYTIEAAAVVTGEELVDAQPAFDQNG-RPAVNFRFNT 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR+F + T +NIG P A+VLD V++AP I IP G I+G FT+E + LA +LR Sbjct: 305 SGARKFGDYTAENIGSPFAIVLDDEVVSAPTIQSHIPGGSGIITGRFTVEESTNLAILLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L +EER +G +LG DSI G A + V +++FM + YG +GL A+ ++ + Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKIATIIAFVGVLVFMFLSYGMFGLFANVALII 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 N+ L LLS++G TLTLP IAGIVL +G+AVD+N+LV ERIREE + ++ ++++G+ Sbjct: 425 NIGLIFGLLSMIGGTLTLPGIAGIVLTVGMAVDANVLVFERIREELKTSKGPARAIELGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 +A S I D+NIT I V+LF G G VRGFAIT+GL IL S+FTAI + R M++ Sbjct: 485 EKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVIWFE 544 Query: 517 YKKMKSI 523 K+ K I Sbjct: 545 RKRPKKI 551 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 90/176 (51%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + II+ + +L+++++ + F L A LI++I G ++ G Sbjct: 379 TIGPELGQDSIDAGKIATIIAFVGVLVFMFLSYGM-FGLFANVALIINIGLIFGLLSMIG 437 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V+V++R+R+ +K TS I+ + L + Sbjct: 438 GTLTLPGIAGIVLTVGMAVDANVLVFERIREELK---TSKGPARAIELGYEKALSAILDA 494 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ FI+ + + G + FAI + GI+ + ++IF+ +++ ++ + Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVIWFERKRPKK 550 >gi|220922172|ref|YP_002497473.1| protein-export membrane protein SecD [Methylobacterium nodulans ORS 2060] gi|219946778|gb|ACL57170.1| protein-export membrane protein SecD [Methylobacterium nodulans ORS 2060] Length = 534 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 204/536 (38%), Positives = 306/536 (57%), Gaps = 14/536 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF----PSAM----PKNRISLGLDLRG 52 +R + ++ + +GL +A+P+F F PS + P I LGLDL+G Sbjct: 2 LRFSTSKIVGTLAVIIVGLALAIPSFFSPEQRKAFVASAPSWLTAIVPTRAIVLGLDLQG 61 Query: 53 GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI-GVFSMRQIQNKITLSFADSRFKENI 111 GS +VLEVD D Q D++R L++EG+ ++ + L D+ + Sbjct: 62 GSQIVLEVDRPDLQRTMAQQLRDDVRRALREEGVQADGGIQLTPRGVQLRIGDAANRAKA 121 Query: 112 ADKVTLFLQGVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169 K+ Q V + + L I + ++ I+ I A+ Q++E++R+ Sbjct: 122 MPKLQALSQPVADAVLGQTGARTLELREEPNGSIQLAFTEAGINARIRRAVSQAIEVVRR 181 Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 R+D G +E +IQ+ G+ RIL+Q+PG QDP RL + LG TAK+ F + Sbjct: 182 RVDLGGTTEPSIQQQGADRILVQVPGLQDPQRLEEQLGKTAKLEFRMLAD---SPAGDVD 238 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 + RD+ G + VE +V G L A FD KT++P+V+ F+ GA+RF + T +N Sbjct: 239 MLPSRDAGGQKVPVERRVMADGADLTDAQPGFDQKTNEPIVNFKFNLRGAQRFGQATSEN 298 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 +G+P+A+VLD V++AP I Q I G+ QISG FT++ A L+ +LRAG+LP KLNI+E Sbjct: 299 VGRPMAIVLDNEVVSAPRILQPITGGQGQISGRFTVQQANDLSVLLRAGALPAKLNIIER 358 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R VG LG DSI G A +A +L+V M YG +GL A+ ++ ++V L L L+S+L Sbjct: 359 RTVGPGLGRDSIEAGKHATLAATLLVVTMMFACYGVFGLFANIALLVHVGLILGLMSVLE 418 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 AT+TLP IAGIVL IG AVDSN+L+ ER+REE R +S+ +L GF RA++TI DSN T Sbjct: 419 ATMTLPGIAGIVLTIGTAVDSNVLIYERVREEVRAGRSIPSALQAGFDRAFATIVDSNST 478 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IA ++LFF G G VRGFA+ L I+ ++ TA+++ R M+ + K + I Sbjct: 479 MAIAAIILFFLGSGPVRGFAVVFILGIMTTVITAVTLTRMMIAVWYHRFRPKVLPI 534 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 72/173 (41%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + R+ I G + + + ++ ++ + F L A L++ + LG ++ Sbjct: 362 GPGLGRDSIEAGKHATLAATLLVVTMMFACYGV-FGLFANIALLVHVGLILGLMSVLEAT 420 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++Y+R+R+ ++ S + + V ++ Sbjct: 421 MTLPGIAGIVLTIGTAVDSNVLIYERVREEVRA---GRSIPSALQAGFDRAFATIVDSNS 477 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 I+ + + G + FA+ GI+ +++ + ++ Y Sbjct: 478 TMAIAAIILFFLGSGPVRGFAVVFILGIMTTVITAVTLTRMMIAVWYHRFRPK 530 >gi|239995623|ref|ZP_04716147.1| Acriflavin resistance protein [Alteromonas macleodii ATCC 27126] Length = 589 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 216/600 (36%), Positives = 351/600 (58%), Gaps = 26/600 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + +Y +I +GLL A PN LPQS+ + P+ + +SLGLDL+GGSHL+L Sbjct: 1 MARFSFRGFVYVLIVMLGLLSAAPNILPQSIKQQLPTWYTTSTLSLGLDLQGGSHLLLAA 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-------QIQNKITLSFADSRFKENIAD 113 D + L +S +L S L+ + + + + + + D Sbjct: 61 DTNALFEKQLNSFSSDLLSELRSQNVRYTKTSHSLTHKDSRSGSVVFTLRSADDARKVKD 120 Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 + L V + +++ L++ +Q++ + +S+E++R+R+++ Sbjct: 121 T------AYQISAQPNGSSALDVEIKQSTVTLTLNELYTEQLVKDTLSRSVEVVRKRLNE 174 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 G++E ++ G IL+Q+PG DP+++++LLGTTA+M+FH + S++ V Sbjct: 175 TGLTEPSVTLQGKDAILVQMPGMSDPTQVKKLLGTTAQMTFHWAANSQSEQ-----VMNK 229 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 +D+ GN Y +E KV + G H+ A + +PVV D GA++F +TRDNIG+ Sbjct: 230 QDAAGNTYRLEQKVALEGEHITDAAGVLSSENGQPVVTFRLDSAGAKQFATMTRDNIGRV 289 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+VLD +V+TAPVIN IP G+ +I+GNFT+ AG A MLR G+LP+ L I+EER VG Sbjct: 290 LAIVLDDKVVTAPVINSVIPGGRGEITGNFTLPEAGNTALMLRTGALPVPLTIIEERTVG 349 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 DLGSD+I G + VAG +L++ FM+ +YG+WG +A F++ +N+ L L+L GATLT Sbjct: 350 PDLGSDAIQTGVESGVAGALLVLAFMVAIYGRWGAIASFALCINMALVFGALTLFGATLT 409 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAG++L +G+AVD+NIL+NERIREE++K + ++++GF +A++TI DSN T LIA Sbjct: 410 LPGIAGLILTMGMAVDANILINERIREESKKGRPAASAIEVGFDKAFATIVDSNFTTLIA 469 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 +LF FG G ++GFAIT+ L ++ S+FTA+++ + +M+ +++ K + D Sbjct: 470 VSLLFMFGSGPIKGFAITIALGLVSSVFTAVALTKMLMLRVVKSKHKNTQDRAQQRVPLR 529 Query: 534 IPDC--------IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 I F+ R + +S++ ++ SI L GL+YG+DF GG + + A Sbjct: 530 FSSPLLRLSDKLSGINFLAKRKIALAVSVVLTVLSIGLFAKPGLHYGVDFTGGTMIELTA 589 Score = 127 bits (318), Expect = 9e-27, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 10/175 (5%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGI 716 GP + + I+ G+ + A+ +L ++ I +W A L +++ G LFG Sbjct: 349 GPDLGSDAIQTGVESGVAGALLVLAFMVAIYGRW--GAIASFALCINMALVFGALTLFGA 406 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 L +A ++ +G +V+ +++ +R+R+ K I+ ++ V ++ Sbjct: 407 TLTLPGIAGLILTMGMAVDANILINERIREESK---KGRPAASAIEVGFDKAFATIVDSN 463 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I+V + ++G I FAI +A G+V SS+F A + + K+ Sbjct: 464 FTTLIAVSLLFMFGSGPIKGFAITIALGLV----SSVFTAVALTKMLMLRVVKSK 514 >gi|294155534|ref|YP_003559918.1| putative preprotein translocase, SecDF subunit [Mycoplasma crocodyli MP145] gi|291600248|gb|ADE19744.1| putative preprotein translocase, SecDF subunit [Mycoplasma crocodyli MP145] Length = 865 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 168/862 (19%), Positives = 340/862 (39%), Gaps = 70/862 (8%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV--DED 63 W I+ I I + A+ F + + P+ I G GG ++++V D Sbjct: 13 WKRIVILSITLISSVFAIV-FGSVFYVAKNPN----RSIEYG----GGIEVLVQVKKDNQ 63 Query: 64 DFVNGFLQMYSDELRSF--LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + S+ L G + KI ++ + S + + + Sbjct: 64 NADKTLTNKVSESLFERLTGGTGLTGTTVSSEGDGKIRITKSGSLN-DLQRREFESKV-- 120 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 K +L T + + + ++ I + + Sbjct: 121 --------ADKPILTMTDLNINPLFKNGEFNPHGSLDSGN-----AKEWIPPFADNGAKY 167 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + + + + + T S+K V + + Sbjct: 168 MIDHQGKDSVSIDLKDNDAIAEWTKAT----------KFISEKHPGQNVILMWINIEELL 217 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + +G + V D + N+ K Sbjct: 218 TLAKTKFPTEWDASGHNLYNFVHVNNMAVQEVPDPTKENPNNKKRIRNVLKEAEFRAKDY 277 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +++ ++Q + + +SGNFT A LA + G+ L+I+ V + L + + Sbjct: 278 LISEAAVSQPLNTKSVIVSGNFTQTEAKELANDINYGTSKYDLDILSSVYVDSALNTSAF 337 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 A + LI +FMIV YG G ++ SI L + LTL + ++L + +IA ++ Sbjct: 338 KSAMLAGLIVFSLISIFMIVNYGLLGALSTISIALYIFLTLLMFTVLRGEYSPATIAALI 397 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 +GIG++VD+NI+ ER++++ S+ S S ++STI D+NIT LI LF+FG Sbjct: 398 IGIGISVDANIITFERLKKDLYSGSSLKKSFKNSNSLSFSTIIDANITTLIVAFTLFYFG 457 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD----- 536 VRGF+I++ LSI+ ++ + R ++ LI Sbjct: 458 TKDVRGFSISLILSIIFTLIVMLIFTRFTSSLLVNTGWFDKKLWLLGVHKKLIAKDNSNK 517 Query: 537 -CIAIQFMRARFWGVGISILFSICSICLL---------FTHGLNYGIDFKGGIQLGVLAN 586 + +++ W +S++ I SI + G+ IDFKGG+ + + + Sbjct: 518 LYVRFDYVKQAKWFALVSLIIIIASIIVFVSIGLSKSNIWDGIVRNIDFKGGLNITIAGD 577 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI- 645 + +S+ S+ ES++ I ++ + Q D+ L + + Sbjct: 578 KEKFVSLSHSDAESIKNYIIQNAAAWKIEDVDSIISLQRVDNDHDNWALIIKSTQDLSDS 637 Query: 646 ----------VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 + +V ++ L+ ++ + I+ + +++Y +R +W F++ Sbjct: 638 ILSIKKGLNENFNNITITNYVVSTTEAKRLLLNSLLAISIAFVGIVLYTLVRMRWTFSIS 697 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK-----NMKL 750 AI L+ D+ + F L ++ + +AA+L+++G+S+ND +V +DR+R+ + Sbjct: 698 AIIGLLHDLLVVVAFIILARLQLSSIMIAAILSIVGFSINDTIVTFDRIREIIINNYHRK 757 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 + + + + +I+ET+ RS YT+ +++ + +G + SF I M FG+ + Sbjct: 758 VLEKATIKKIANTAISETIKRSFYTTATTMTALIILLAFGNATDFSFNIVMLFGMAIGVY 817 Query: 811 SSIFIAAPILLFIYDWRAKNAR 832 SSIFI I +F+ + R K + Sbjct: 818 SSIFICTRIWVFLENIRQKGIK 839 >gi|118580218|ref|YP_901468.1| preprotein translocase subunit SecD [Pelobacter propionicus DSM 2379] gi|118502928|gb|ABK99410.1| protein-export membrane protein SecD [Pelobacter propionicus DSM 2379] Length = 530 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 184/532 (34%), Positives = 287/532 (53%), Gaps = 20/532 (3%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65 W + L + + LL P + Q + +PK++I LGLDL+GG+HLVLEVD Sbjct: 7 WRISLIVIFALVSLLYLTPTLVTQLP-SWWTGLLPKDKIHLGLDLQGGTHLVLEVDTQKA 65 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124 V G L + + +L L + + + + N++TL + + + Sbjct: 66 VEGSLDIVATDLEDTLNNKNLHFKRISRTDWNRVTLLLYEKDTAAAVQKMLKDKY----- 120 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 + L +++ ++ A+ Q++E IR RIDQ G+SE IQR Sbjct: 121 --PGYQQSPLYDDGGFVALNLSITDEAAKDRKDKAVAQALETIRNRIDQFGVSEPVIQRE 178 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV-----------RFL 233 G I++QLPG +DP R L+G TA++ F V + Sbjct: 179 GVDHIVVQLPGIKDPQRAIDLIGKTARLEFKLVREDIPPGSISLPDDAEIMKEKEVDPDT 238 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 Y+++ K I+G L A D + ++P V I F+ +G++ F +VT N+GK Sbjct: 239 GAVSEVPYVLQKKAMITGDLLTDAQVRIDSQFNQPYVAIEFNSLGSKLFDQVTAANVGKR 298 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 A+VLD V +APVI + I G AQISGNFT +TA LA +LRAG+LP + I++ VG Sbjct: 299 FAIVLDNNVYSAPVIRERISGGSAQISGNFTEKTAADLAIVLRAGALPAPVKIIQNETVG 358 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 LG DSI KG A + G++++V+FM + Y G+VA+ + +NV+ + L+ LGATLT Sbjct: 359 PSLGQDSITKGLMAGLIGILVVVVFMGLYYKLSGMVANLGMVMNVLYLMGALAALGATLT 418 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IA IVL IG++VD+N+++ ERIREE R +S +LD G+ +A+ TI DS++T LI Sbjct: 419 LPGIAAIVLLIGMSVDANVIIFERIREELRLGKSPKSALDAGYDKAFLTIMDSHVTTLIT 478 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 VLF FG G V+GFA+++ L ++I++FT++ + + + +K + I Sbjct: 479 AAVLFQFGTGPVKGFAVSLSLGVIINLFTSLIGTKVIFDLFLYRGTVKKMSI 530 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 94/181 (51%), Gaps = 5/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E VGP + ++ I KG++ +I + +++++ + +K + A +++++ +G A Sbjct: 353 QNETVGPSLGQDSITKGLMAGLIGILVVVVFMGLYYKLS-GMVANLGMVMNVLYLMGALA 411 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G L +AA++ LIG SV+ V++++R+R+ ++L S + +D ++ Sbjct: 412 ALGATLTLPGIAAIVLLIGMSVDANVIIFERIREELRL---GKSPKSALDAGYDKAFLTI 468 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + + I+ + +G + FA+ ++ G+++ +S+ I ++ ++ +R + Sbjct: 469 MDSHVTTLITAAVLFQFGTGPVKGFAVSLSLGVIINLFTSL-IGTKVIFDLFLYRGTVKK 527 Query: 833 I 833 + Sbjct: 528 M 528 >gi|209964363|ref|YP_002297278.1| preprotein translocase subunit SecD [Rhodospirillum centenum SW] gi|209957829|gb|ACI98465.1| protein-export membrane protein SecD, putative [Rhodospirillum centenum SW] Length = 522 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 215/514 (41%), Positives = 302/514 (58%), Gaps = 22/514 (4%) Query: 21 IALPNFLPQSMLDRF----PSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE 76 A PN L ++ +D + P +P ++LGLDL+GGSHL+LEV D V L D Sbjct: 22 YAAPNVLGRAKVDSWASSLPGWLPTKTVNLGLDLQGGSHLLLEVKVDVVVQERLNALQDG 81 Query: 77 LRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLV 136 R+ L+ IG + + N I + D E V V S L + Sbjct: 82 ARAALRDARIGYTDLGVVGNGIAFTLRDPADLETARSAVRN----VESDL-------SIR 130 Query: 137 TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196 T I L+ + + + A+EQS+EI+R+RID+ G E TIQR G RIL+QLPG Sbjct: 131 TDEGNRIVASLTDSTVQGLRRAAVEQSIEIVRRRIDETGTREPTIQRQGEDRILVQLPGV 190 Query: 197 QDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISG 251 DP R+++LLG TAK++F V + S G L DG +V +V + G Sbjct: 191 DDPERVKRLLGQTAKLTFRLVDDDISPADAQAGRIPPGSELLPSRDGGVEVVRKRVMVDG 250 Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311 L + +F +PVV FD +GARRF E T N+ K A+VLD +V++AP I + Sbjct: 251 STLVDSQPSFQDG--QPVVSFRFDSLGARRFGEATSANVEKRFAIVLDNQVISAPRIQEP 308 Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371 I G I G+FT+ETA L+ +LRAG+LP L ++EER VG LG+DSI G A +AG Sbjct: 309 ILGGSGIIRGSFTVETANDLSLLLRAGALPAPLTVLEERTVGPGLGADSIEAGRIASIAG 368 Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431 LV++V FM + YG +GL A+ ++ N+ L A LS+L ATLTLP IAGIVL IG+AVD+N Sbjct: 369 LVMVVAFMALCYGLFGLFANLALVFNIALIFAALSILQATLTLPGIAGIVLTIGMAVDAN 428 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +L+ ERIREE R ++ ++D G++RA +TI DSN+T LIA ++LF FG G V+GFA+T Sbjct: 429 VLIFERIREELRFGRTPIAAIDAGYNRALTTIIDSNLTTLIAALLLFMFGSGPVKGFAVT 488 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 + + IL SMFTAI + R M++ +R + K++ I Sbjct: 489 LSIGILASMFTAIMVTRLMVVVWLRRTRPKTVPI 522 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 78/173 (45%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I G + I + ++ ++ + + F L A L+ +I ++ Sbjct: 350 GPGLGADSIEAGRIASIAGLVMVVAFMALCYGL-FGLFANLALVFNIALIFAALSILQAT 408 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++++R+R+ ++ + ID N L + +++ Sbjct: 409 LTLPGIAGIVLTIGMAVDANVLIFERIREELRF---GRTPIAAIDAGYNRALTTIIDSNL 465 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 I+ L + ++G + FA+ ++ GI+ + ++I + +++ Sbjct: 466 TTLIAALLLFMFGSGPVKGFAVTLSIGILASMFTAIMVTRLMVVVWLRRTRPK 518 >gi|126732591|ref|ZP_01748388.1| protein-export membrane protein SecD [Sagittula stellata E-37] gi|126706875|gb|EBA05944.1| protein-export membrane protein SecD [Sagittula stellata E-37] Length = 555 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 196/549 (35%), Positives = 297/549 (54%), Gaps = 33/549 (6%) Query: 6 WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43 W L + +GLL+ALPN ++ +PS +P Sbjct: 7 WKRWLIWLTVVVGLLLALPNLFYGRVEIHNDAVKAIEAGDDTSENRAAEAEWPSFLPSGL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-----QIQNKI 98 ++LGLDLRGG+HL+ V D ++ E+R L+ E V ++R + ++ Sbjct: 67 VNLGLDLRGGAHLLARVQTADVYKARMESLWPEVRDLLRDERDTVGTIRWNSEAVDRGEL 126 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 + + + + V Q V + L+ E+ + LS+ Sbjct: 127 RVRLSKPEGMQRAIEVVRGLAQPVVTLTGAGASDILV-RGEGDELVVTLSEAEKQATDDR 185 Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV- 217 ++QS+EIIR+RID++G E TIQR G+ RILIQ+PG + L+ ++GTTA+++F V Sbjct: 186 TLQQSLEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSAAELKAIIGTTAQLTFQPVV 245 Query: 218 ---LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274 N G + D G Y++E ++G L A FD +P V +F Sbjct: 246 GRTTNENDAPGPGNELLPSLDEKGLYYVLEQTPVVTGEELTNAQPTFDQNG-RPAVSFNF 304 Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334 + GAR+F + T NIG P A+VLD V++APVI I G I+GNFT+E + LA + Sbjct: 305 NPSGARKFGDYTAANIGSPFAIVLDDEVISAPVIQSHIGGGAGIITGNFTVEESTNLAVL 364 Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394 LRAG+LP L +EER +G +LG DSI G A V ++ FM+ YG +G+ A+ ++ Sbjct: 365 LRAGALPAGLEFLEERTIGPELGQDSIEAGKLATGVAFVAVLGFMVASYGLFGVFANIAL 424 Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454 LNV L LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++++ Sbjct: 425 ILNVALMFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKTARGPARAIEL 484 Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 G+ +A S I D+NIT I V+L+ G G VRGFA+T+G I+ S+FTAI + R +++ Sbjct: 485 GYEKALSAIVDANITTFITAVILYVMGSGPVRGFAVTLGFGIITSVFTAIFVTRLLIVTW 544 Query: 515 IRYKKMKSI 523 ++ K+I Sbjct: 545 FERRRPKTI 553 Score = 158 bits (398), Expect = 4e-36, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 89/175 (50%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + ++ +A+L ++ + F + A LIL++ G +L G Sbjct: 381 TIGPELGQDSIEAGKLATGVAFVAVLGFMVASYGL-FGVFANIALILNVALMFGLLSLIG 439 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K T+ I+ + L V Sbjct: 440 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---TARGPARAIELGYEKALSAIVDA 496 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + V G + FA+ + FGI+ + ++IF+ +++ ++ R Sbjct: 497 NITTFITAVILYVMGSGPVRGFAVTLGFGIITSVFTAIFVTRLLIVTWFERRRPK 551 >gi|27363910|ref|NP_759438.1| preprotein translocase subunit SecF [Vibrio vulnificus CMCP6] gi|37678933|ref|NP_933542.1| preprotein translocase subunit SecF [Vibrio vulnificus YJ016] gi|320157291|ref|YP_004189670.1| protein-export membrane protein SecF [Vibrio vulnificus MO6-24/O] gi|27360027|gb|AAO08965.1| protein-export membrane protein SecF [Vibrio vulnificus CMCP6] gi|37197675|dbj|BAC93513.1| preprotein translocase subunit SecF [Vibrio vulnificus YJ016] gi|319932603|gb|ADV87467.1| protein-export membrane protein SecF [Vibrio vulnificus MO6-24/O] Length = 315 Score = 239 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 165/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR + S+L SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAEKTIDFMRWSKFAFVFSLLMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +RS LE+ GD + QNF ++ +VRL+ + D +T +++ Sbjct: 61 NLEEIRSALEAKGFGDATVQNFGSARDVMVRLRPRE-DMAGETLGNQILSAIKEGTGKSV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSMRFEWRLAAGAVMALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L IE +LT VAA+LT++GYS+ND +VV+DR+R+N + ++++ SI +TL Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-AEIMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + V GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297 >gi|301063414|ref|ZP_07203950.1| export membrane protein SecD [delta proteobacterium NaphS2] gi|300442487|gb|EFK06716.1| export membrane protein SecD [delta proteobacterium NaphS2] Length = 533 Score = 239 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 194/539 (35%), Positives = 308/539 (57%), Gaps = 23/539 (4%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 ++ W ++ + + L +P+ + S +PK++I LGLDL+GG HLVLEV+ Sbjct: 3 KSLTWRSVIALLAILVALSYLVPSITGTVP-AWWSSFLPKDKIHLGLDLQGGMHLVLEVE 61 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120 + G L+ DE++ L+++ I SM+++ + + S+ + D V Sbjct: 62 ASKAIEGHLERVVDEMKGDLREDKIRYVSMKRVGLKGVEIVLMRSKDETLFRDMV----- 116 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + +++ + +VL + +++ A+EQ++E IR R+DQ G+SE Sbjct: 117 --AANYPDFSIESMPEQNGKPVFEMVLDEKARIRIMKMAVEQALETIRNRVDQFGVSEPD 174 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--- 237 I+ HR+LIQLPG +DP R L+G TA + F V +S + + G D Sbjct: 175 IRPQEDHRLLIQLPGIKDPKRAVALIGKTALLEFKLVDEEHSVQEALKGNVPPGDEILYQ 234 Query: 238 -----------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 YL++ + ++G +L A D + ++P V ISFD GAR F +VT Sbjct: 235 VSVDPDTGHERKTPYLLKKRTALTGEYLTDARVQIDSRYNEPYVSISFDARGARLFEQVT 294 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 N+ K LA+VLD +V +APVI I GKAQI+G +T + A LA +LRAG+LP + I Sbjct: 295 GQNVKKRLAIVLDNKVNSAPVIQDKISGGKAQITGRYTTDEARDLAIVLRAGALPAPVKI 354 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 +EER VG LG DSI KG +++ G +++++FM V YG G +AD ++ LN++ +A L+ Sbjct: 355 IEERTVGPSLGKDSIQKGFKSMLIGGIIVIIFMAVYYGLSGAIADLALLLNILFIMAGLA 414 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 ATLTLP IAGI+L IG++VD+N+L+ ERIREE R ++ +++ G+S+A TI D+ Sbjct: 415 FFSATLTLPGIAGIILTIGMSVDANVLIFERIREEVRLGKTARTAIEGGYSKALVTILDA 474 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T LI +VLF FG GAVRGFA+T+ + I+ S+FTAI + R + + + +K + I Sbjct: 475 QLTTLIVALVLFQFGTGAVRGFAVTLSIGIVASLFTAIFVTRIIFDYFYVKRNVKKLSI 533 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I+KG ++I I ++I++ + + A+ A L+L+I + A F Sbjct: 361 GPSLGKDSIQKGFKSMLIGGIIVIIFMAVYYGLSGAI-ADLALLLNILFIMAGLAFFSAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG SV+ V++++R+R+ ++L + R I+ ++ L + + Sbjct: 420 LTLPGIAGIILTIGMSVDANVLIFERIREEVRL---GKTARTAIEGGYSKALVTILDAQL 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I L + +G + FA+ ++ GIV + ++IF+ I + Y R Sbjct: 477 TTLIVALVLFQFGTGAVRGFAVTLSIGIVASLFTAIFVTRIIFDYFYVKRNVKK 530 >gi|254462860|ref|ZP_05076276.1| protein-export membrane protein SecD [Rhodobacterales bacterium HTCC2083] gi|206679449|gb|EDZ43936.1| protein-export membrane protein SecD [Rhodobacteraceae bacterium HTCC2083] Length = 553 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 198/547 (36%), Positives = 306/547 (55%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSM----------------------LDRFPSAMPKNR 43 W ++ +C +GLL+ALPN + ++P +P Sbjct: 7 WKRVVIWAVCALGLLLALPNAFYSKVEQRNDALAAIEVSGNSAERDAMAAQWPGYLPSGL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI---QNKITL 100 ++LGLDLRGG+HL+ EV D + ++ + E+R L+ E + ++R +++ + Sbjct: 67 VNLGLDLRGGAHLLAEVKVQDVYSARMKAFWPEVRDALRPERATIGTIRLQPSAGDQLKV 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + V Q V S V + + + ++I LS+ + Sbjct: 127 RISKPEGTARALEVVRGLAQQVVSLSGVGASDIEVN-SDDGVLTIRLSEAEKRATDERTM 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217 +QS+EIIR+RID++G E TIQR G+ RILIQ+PG + L+ ++GTTA+++F V Sbjct: 186 QQSLEIIRRRIDEVGTREPTIQRQGTDRILIQVPGIGSAAELKAIIGTTAQLTFQPVVGR 245 Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 ++ G + D +G Y +E ++G L A FD +P V+ F+ Sbjct: 246 GTDPDASAGLGNEIVPSLDEEGAFYTLESAPVVTGEELVDAQPAFDQNG-RPAVNFRFNP 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR+F + T +NIG P A+VLD V++APVI IP G I+GNFT+E + LA +LR Sbjct: 305 TGARKFGDYTAENIGSPFAIVLDSEVISAPVIQSHIPGGSGIITGNFTVEESTNLAVLLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L +EER +G +LG+DSI G A + +++FM + YG +G+ A+ ++ + Sbjct: 365 AGALPAGLEFLEERTIGPELGADSIKAGQVACIVAFAAVLIFMFLSYGTFGIFANIALII 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 NV L LLS++GATLTLP IAGIVL IG+AVD+N+LV ERIREE + ++ ++D+G+ Sbjct: 425 NVGLIFGLLSMVGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKSSKGPARAIDLGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 +A S I D+N T I V+LF G G VRGFAIT+G IL S+FTAI + R +++ Sbjct: 485 EKALSAIIDANFTTFITAVILFVMGSGPVRGFAITLGFGILTSVFTAIFVTRLIVVMWFE 544 Query: 517 YKKMKSI 523 K K++ Sbjct: 545 RKHPKTL 551 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 91/175 (52%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ + I+ G V I++ A+LI++++ + F + A LI+++ G ++ G Sbjct: 379 TIGPELGADSIKAGQVACIVAFAAVLIFMFLSYG-TFGIFANIALIINVGLIFGLLSMVG 437 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V+V++R+R+ +K +S ID + L + Sbjct: 438 ATLTLPGIAGIVLTIGMAVDANVLVFERIREELK---SSKGPARAIDLGYEKALSAIIDA 494 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + FI+ + + V G + FAI + FGI+ + ++IF+ I++ ++ + Sbjct: 495 NFTTFITAVILFVMGSGPVRGFAITLGFGILTSVFTAIFVTRLIVVMWFERKHPK 549 >gi|330814106|ref|YP_004358345.1| protein-export membrane protein SecF [Candidatus Pelagibacter sp. IMCC9063] gi|327487201|gb|AEA81606.1| protein-export membrane protein SecF [Candidatus Pelagibacter sp. IMCC9063] Length = 301 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 99/292 (33%), Positives = 174/292 (59%), Gaps = 4/292 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 F++ + + +S + S+ FT GLN G+DFKGG + + +P + +R Sbjct: 4 YNKKYNFLKFKKPFLILSTILFAISLGAFFTKGLNLGVDFKGGTVIEMKLAQPYNSEDIR 63 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 +L + +GD+ + F + FL ++ + D+ + + ++ + + E Sbjct: 64 KSLLKINLGDVVVKEFGSSREFLATIEKKGKDNDFVGSIKKHLESDLAREFDF---RRVE 120 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +VG KIS+EL + G+ V+++ MLIYIWIRF+W F+LG+I LI D+ T+G F+L G Sbjct: 121 VVGSKISKELTKSGLYSVVLALFLMLIYIWIRFEWQFSLGSILALIHDVVITIGAFSLVG 180 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 EFNL+ VAA+LT++GYS+ND VV+YDR+R+ + ++LI+ ++N TL R++ T Sbjct: 181 FEFNLSIVAAILTIVGYSMNDTVVIYDRIREFL-KIDDRQDIQELINDAVNSTLPRTLKT 239 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 S+ ++++ + V+GG ++ F+ + +G+++ SSIF+AAPIL+F R Sbjct: 240 SVTTLLALVSIYVFGGEILKGFSFALIWGVLIGTYSSIFVAAPILVFFKVKR 291 >gi|312601215|gb|ADQ90470.1| Protein-export membrane protein secD [Mycoplasma hyopneumoniae 168] Length = 865 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 150/869 (17%), Positives = 311/869 (35%), Gaps = 86/869 (9%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---D 61 + + + + + NF I+ ++ GG+ ++++V D Sbjct: 18 RFFLAFLTFALLGSGIFLVSNFY------------ISKNINRSIEYGGGAEVLVQVKTLD 65 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSM--RQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + L + + + +I +S + + + Sbjct: 66 GKIPSSKVVKEADAAIFQRLTGGANLSGTSVFTEGEGRIRISRNKISNNRELDTFIQEIV 125 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 K +L T + + ++Q E G + Sbjct: 126 N-----------KPVLTITDVDTNPLFFEGKFDKNLK---LDQGNETNWIVPFAPGSA-- 169 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 + + ++ +K + + + K + + Sbjct: 170 ---ISQPNPQNPANNQVLIELKDKKAQLEWSKATEYISKLGHGKNRILIWSNIVELKKIA 226 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 + + SG ++ + T + K Sbjct: 227 KEKFPAQWAKSGENIYNFVHVGEKTTPEF------------LQGNKILQPELKKYQFDAK 274 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 +++ ++QA+ I+G FT + A LA + G+ KL+ + V Sbjct: 275 KYLISDATVSQALNGKSFVITGRFTPQEAKQLALDINYGTADYKLDFLSASFVSKTKSDS 334 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 G AI + +I LF+++ YG G +A S+ L V LTL +++ + +I+ Sbjct: 335 VFIAGWIAIGLAIAIISLFLLINYGLLGALATISLSLYVFLTLLFFTIVRGEYSPITISA 394 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 +V+GIG+ +D+N++ E + SV + +++ I DSNIT LIA +VLFF Sbjct: 395 LVVGIGMNIDANVISFEVFKSRIYSGNSVLKANYQANRLSFNAILDSNITTLIAALVLFF 454 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAM----------------MIFIIRYKKMKSI 523 FG V+ F+IT+ SI+ ++ I + + + K Sbjct: 455 FGTKNVKSFSITLIFSIIFTLIVTIGFTKFFTSFILKANFFQNNEKKLWLLGIKKYYLRK 514 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID----FKGGI 579 + + D I + + ++ G + F GG Sbjct: 515 YQRGYNSIYSQIDYEKIYKYTRWLPLILFLGSIIVFAVFAGIYRSFGSGFNLAIDFSGGT 574 Query: 580 QLGVLANRPV-------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + ++ + S L+S I + N + + Sbjct: 575 NFLIESSNSSYDLITKEKAEKIISFLDSQNINKSNSTILLNPLNENGNIFNLEIKTKLDL 634 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + + + + +++LI I+ V I+ I + I+ IRFKW F Sbjct: 635 ATKIASLNTAIQNNFSNIRMTNYSISNEEAQKLIFNAILSVGIALIFVTIFTLIRFKWTF 694 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR------- 745 +L I +L+ ++ L + IE + V A+LTLIGY+VND +VV+DR++ Sbjct: 695 SLAIIFSLLFNVLMVLLAIIITRIEISQNLVVAILTLIGYTVNDTIVVFDRVKGRFSEIN 754 Query: 746 -KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 +N+ + +++ ++I ET RSVYTS+ ++++ + ++ S+ F++ M G Sbjct: 755 HENVYKFDK---IKEISLQAIRETAKRSVYTSLTTILTIVVLMIFYESIDIVFSLTMLIG 811 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 +++ SS+FIA I + + +R + + Sbjct: 812 VIIGTYSSLFIATRIWIILESYRNRKKEM 840 >gi|54020361|ref|YP_115653.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma hyopneumoniae 232] gi|53987534|gb|AAV27735.1| protein-export membrane protein secD [Mycoplasma hyopneumoniae 232] Length = 865 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 150/869 (17%), Positives = 311/869 (35%), Gaps = 86/869 (9%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---D 61 + + + + + NF I+ ++ GG+ ++++V D Sbjct: 18 RFFLAFLTFALLGSGIFLVSNFY------------ISKNINRSIEYGGGAEVLVQVKTLD 65 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSM--RQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + L + + + +I +S + + + Sbjct: 66 GKIPSSKVVKEADAAIFQRLTGGANLSGTSVFTEGEGRIRISRNKISNNRELDTFIQEIV 125 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 K +L T + + ++Q E G + Sbjct: 126 N-----------KPVLTITDVDTNPLFFEGKFDKNLK---LDQGNETNWIVPFAPGSA-- 169 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 + + ++ +K + + + K + + Sbjct: 170 ---ISQPNPQNPANNQVLIELKDKKAQLEWSKATEYISKLGHGKNRILIWSNIVELKKIA 226 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 + + SG ++ + T + K Sbjct: 227 KEKFPAQWAKSGENIYNFVHVGEKTTPEF------------LQGNKILQPELKKYQFDAK 274 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 +++ ++QA+ I+G FT + A LA + G+ KL+ + V Sbjct: 275 KYLISDATVSQALNGKSFVITGRFTPQEAKQLALDINYGTADYKLDFLSASFVSKTKSDS 334 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 G AI + +I LF+++ YG G +A S+ L V LTL +++ + +I+ Sbjct: 335 VFIAGWIAIGLAIAIISLFLLINYGLLGALATISLSLYVFLTLLFFTIVRGEYSPITISA 394 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 +V+GIG+ +D+N++ E + SV + +++ I DSNIT LIA +VLFF Sbjct: 395 LVVGIGMNIDANVISFEVFKSRIYSGNSVLKANYQANRLSFNAILDSNITTLIAALVLFF 454 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAM----------------MIFIIRYKKMKSI 523 FG V+ F+IT+ SI+ ++ I + + + K Sbjct: 455 FGTKNVKSFSITLIFSIIFTLIVTIGFTKFFTSFILKANFFQNNEKKLWLLGIKKYYLRK 514 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID----FKGGI 579 + + D I + + ++ G + F GG Sbjct: 515 YQRGYNSIYSQIDYEKIYKYTRWLPLILFLGSIIVFAVFAGIYRSFGSGFNLAIDFSGGT 574 Query: 580 QLGVLANRPV-------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + ++ + S L+S I + N + + Sbjct: 575 NFLIESSNSSYDLITKEKAEKIISFLDSQNINKSNSTILLNPLNENGNIFNLEIKTKLDL 634 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + + + + +++LI I+ V I+ I + I+ IRFKW F Sbjct: 635 ATKIASLNAAIQNNFSNIRMTNYSISNEEAQKLIFNAILSVGIALIFVTIFTLIRFKWTF 694 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR------- 745 +L I +L+ ++ L + IE + V A+LTLIGY+VND +VV+DR++ Sbjct: 695 SLAIIFSLLFNVLMVLLAIIITRIEISQNLVVAILTLIGYTVNDTIVVFDRVKARFSEIN 754 Query: 746 -KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 +N+ + +++ ++I ET RSVYTS+ ++++ + ++ S+ F++ M G Sbjct: 755 HENVYKFDK---IKEISLQAIRETAKRSVYTSLTTILTIVVLMIFYESIDIVFSLTMLIG 811 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 +++ SS+FIA I + + +R + + Sbjct: 812 VIIGTYSSLFIATRIWIILESYRNRKKEM 840 >gi|329889963|ref|ZP_08268306.1| protein-export membrane protein SecD [Brevundimonas diminuta ATCC 11568] gi|328845264|gb|EGF94828.1| protein-export membrane protein SecD [Brevundimonas diminuta ATCC 11568] Length = 532 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 179/529 (33%), Positives = 303/529 (57%), Gaps = 10/529 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W + L ++ +GL +A P+ L + + PS +P N ++LGLDL+GGS+L+LEVD Sbjct: 5 SRWKITLVALSLVLGLFLAYPSVLSPAQREALPSWLPSNGLNLGLDLQGGSYLLLEVDVP 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 + + +++R L+++ + + M++ + ++ A+ + + + Q Sbjct: 65 EMRTKRISNLMEDVRVSLREDQVNIMGMQREAGGVVVTVAEGAAYDTAFNTLRTMAQQ-- 122 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + I + + + + A++QS+E++R+R+D G E I R Sbjct: 123 GVGPTGQPDRVATKLGGGRIRYAFTDAALASMGATAVDQSIEVVRRRLDSSGTKEIAITR 182 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL------PNNSKKGFMFGVRFLRDSD 237 G+ RI+IQ PG+ DP+ L +L+G TA+++F V + L D Sbjct: 183 QGADRIVIQAPGQSDPAELERLVGRTAQLTFQMVDTSPTGLNDALAGRVPPDAELLVDDL 242 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 G YLV+ ++ +SG +L + ++P +D FD G+RRF E T N+GKP A++ Sbjct: 243 GTPYLVKRRILVSGENLTR-AGVGADQNNRPAIDFQFDSQGSRRFGEATAQNLGKPFAII 301 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 LDG+V++AP I AI G+ QI+GNFTI +A L +L G+LP L + E R V A+LG Sbjct: 302 LDGKVISAPTIQSAITGGRGQITGNFTIASASELVNLLNGGALPAPLKVEERRVVTAELG 361 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPS 416 +D++ G + G +IV+FMI+ YG +G ++ + LN IL +A +SL ATLTLP Sbjct: 362 ADAVAAGALSTALGFAVIVIFMILAYGFLFGGISVIGLILNGILIVAAMSLTQATLTLPG 421 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAG++L +AVD+N+L+ ER+R+E R+ +SV S+D GF+RA TI D+N+T L+A ++ Sbjct: 422 IAGLILTFAVAVDANVLIYERMRDEARQGRSVVASMDAGFNRAMGTIIDANLTTLVAALI 481 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +F FG G VRGFA T+ + + S+F+++ + ++ + ++ K K + I Sbjct: 482 MFMFGAGPVRGFAWTLTIGVFTSVFSSVLTAQVLLGYWLKIAKPKKLPI 530 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 72/173 (41%), Gaps = 3/173 (1%) Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 ++ + + G + + ++I++ + + + F ++ LIL+ + +L Sbjct: 358 AELGADAVAAGALSTALGFAVIVIFMILAYGFLFGGISVIGLILNGILIVAAMSLTQATL 417 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 L +A ++ +V+ V++Y+RMR + S +D N +G + ++ Sbjct: 418 TLPGIAGLILTFAVAVDANVLIYERMRDEARQ---GRSVVASMDAGFNRAMGTIIDANLT 474 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ L M ++G + FA + G+ + SS+ A +L + Sbjct: 475 TLVAALIMFMFGAGPVRGFAWTLTIGVFTSVFSSVLTAQVLLGYWLKIAKPKK 527 >gi|224369815|ref|YP_002603979.1| SecD [Desulfobacterium autotrophicum HRM2] gi|223692532|gb|ACN15815.1| SecD [Desulfobacterium autotrophicum HRM2] Length = 525 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 195/540 (36%), Positives = 288/540 (53%), Gaps = 30/540 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ W L + I I L+ LP P P +I+LGLDL+GG +LVLEV Sbjct: 1 MKILTWRGTLITSILAIALVYLLPTVC--------PDCWPHKKINLGLDLQGGMNLVLEV 52 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI-QNKITLSFADSRFKENIADKVTLFL 119 + V L+ EL+ L+ + + N IT + + ++ Sbjct: 53 QSEKAVETTLERTIHELKKELRDGDVKHSGISLNAGNTITAVLSGKENIDGFNKILSENF 112 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 + + + L + + A EQ++E IR RID+ G+SE Sbjct: 113 NTLMINSTQ-------KQGEATTMVLKLPDKEQESIRKMATEQALETIRNRIDEFGVSEP 165 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD-- 237 I+ G +RIL+QLPG D R + L+G TA+++F V + G DS Sbjct: 166 DIRIQGENRILVQLPGVTDTQRAKDLIGRTARLNFQLVDETGDVASALKGTPPPGDSILY 225 Query: 238 ------------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 +L++++V + G L A D + ++P V I FD GAR F + Sbjct: 226 QVKTNPQTGQTIKTPFLIKNRVLLDGSSLTDARVMIDSQYNEPYVGIEFDRKGARLFERI 285 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 T +NI K LA+VLD V +APVI I GKA+I+GNFT E A LA LRAG+LP + Sbjct: 286 TGENIKKRLAIVLDKTVYSAPVIQDRIAGGKARITGNFTTEEARDLAIALRAGALPAPVK 345 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 I+EER VG LG+DSI G +++ G +L+++FM + Y GL+ADF++ +N+IL L Sbjct: 346 ILEERTVGPTLGADSIRMGIVSMIVGGLLVIIFMAIYYKGSGLIADFALIMNIILIGGGL 405 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 + ATLTLP IAGI+L IG+AVD+N+++ ERIREE ++ S+ GF RA T+ D Sbjct: 406 AAFQATLTLPGIAGIILTIGMAVDANVIIFERIREELFSGKTPAASVKAGFERATLTVLD 465 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +N+T LI VVLF FG G ++GFA+T+GL I+ S+FTA+ + ++ F I KK+ ++ I Sbjct: 466 ANVTTLIVAVVLFQFGTGPIKGFAVTLGLGIVASLFTALVLSKSCFDFFISGKKVSTLSI 525 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 76/159 (47%), Gaps = 4/159 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + IR GIV +I+ + ++I++ I +K L A LI++I G A F Sbjct: 353 GPTLGADSIRMGIVSMIVGGLLVIIFMAIYYK-GSGLIADFALIMNIILIGGGLAAFQAT 411 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++++R+R+ + + + + + ++ Sbjct: 412 LTLPGIAGIILTIGMAVDANVIIFERIREELF---SGKTPAASVKAGFERATLTVLDANV 468 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 I + + +G I FA+ + GIV + +++ ++ Sbjct: 469 TTLIVAVVLFQFGTGPIKGFAVTLGLGIVASLFTALVLS 507 >gi|71893589|ref|YP_279035.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma hyopneumoniae J] gi|71851716|gb|AAZ44324.1| protein-export membrane protein [Mycoplasma hyopneumoniae J] Length = 865 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 150/869 (17%), Positives = 311/869 (35%), Gaps = 86/869 (9%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---D 61 + + + + + NF I+ ++ GG+ ++++V D Sbjct: 18 RFFLAFLTFALLGSGIFLVSNFY------------ISKNINRSIEYGGGAEVLVQVKTLD 65 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSM--RQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + L + + + +I +S + + + Sbjct: 66 GKIPSSKVVKEADAAIFQRLTGGANLSGTSVFTEGEGRIRISRNKISNNRELDTFIQEIV 125 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 K +L T + + ++Q E G + Sbjct: 126 N-----------KPVLTITDVDTNPLFFEGKFDKNLK---LDQGNETNWIVPFAPGSA-- 169 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 + + ++ +K + + + K + + Sbjct: 170 ---ISQPNPQNPANNQVLIELKDKKAQLEWSKATEYISKLGHGKNRILIWSNIVELKKIA 226 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 + + SG ++ + T + K Sbjct: 227 KEKFPAQWAKSGENIYNFVHVGEKTTPEF------------LQGNKILQPELKKYQFDAK 274 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 +++ ++QA+ I+G FT + A LA + G+ KL+ + V Sbjct: 275 KYLISDATVSQALNGKSFVITGRFTPQEAKQLALDINYGTADYKLDFLSASFVSKTKSDS 334 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 G AI + +I LF+++ YG G +A S+ L V LTL +++ + +I+ Sbjct: 335 VFIAGWIAIGLAIAIISLFLLINYGLLGALATISLSLYVFLTLLFFTIVRGEYSPITISA 394 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 +V+GIG+ +D+N++ E + SV + +++ I DSNIT LIA +VLFF Sbjct: 395 LVVGIGMNIDANVISFEVFKSRIYSGNSVLKANYQANRLSFNAILDSNITTLIAALVLFF 454 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAM----------------MIFIIRYKKMKSI 523 FG V+ F+IT+ SI+ ++ I + + + K Sbjct: 455 FGTKNVKSFSITLIFSIIFTLIVTIGFTKFFTSFILKANFFQNNEKKLWLLGIKKYYLRK 514 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID----FKGGI 579 + + D I + + ++ G + F GG Sbjct: 515 YQRGYNSIYSQIDYEKIYKYTRWLPLILFLGSIIVFAVFAGIYRSFGSGFNLAIDFSGGT 574 Query: 580 QLGVLANRPV-------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + ++ + S L+S I + N + + Sbjct: 575 NFLIESSNSSYDLITKEKAEKIISFLDSQNINKSNSTILLNPLNENGNIFNLEIKTKLDL 634 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + + + + +++LI I+ V I+ I + I+ IRFKW F Sbjct: 635 ATKIASLNTAIQNNFSNIRMTNYSISNEEAQKLIFNAILSVGIALIFVTIFTLIRFKWTF 694 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR------- 745 +L I +L+ ++ L + IE + V A+LTLIGY+VND +VV+DR++ Sbjct: 695 SLAIIFSLLFNVLMVLLAIIITRIEISQNLVVAILTLIGYTVNDTIVVFDRVKARFSEIN 754 Query: 746 -KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 +N+ + +++ ++I ET RSVYTS+ ++++ + ++ S+ F++ M G Sbjct: 755 HENVYKFDK---IKEISLQAIRETAKRSVYTSLTTILTIVVLMIFYESIDIVFSLTMLIG 811 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 +++ SS+FIA I + + +R + + Sbjct: 812 VIIGTYSSLFIATRIWIILESYRNRKKEM 840 >gi|72080580|ref|YP_287638.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma hyopneumoniae 7448] gi|71913704|gb|AAZ53615.1| protein-export membrane protein [Mycoplasma hyopneumoniae 7448] Length = 865 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 150/869 (17%), Positives = 311/869 (35%), Gaps = 86/869 (9%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---D 61 + + + + + NF I+ ++ GG+ ++++V D Sbjct: 18 RFFLAFLTFTLLGSGIFLVSNFY------------ISKNINRSIEYGGGAEVLVQVKTLD 65 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSM--RQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + L + + + +I +S + + + Sbjct: 66 GKIPSSKVVKEADAAIFQRLTGGANLSGTSVFTEGEGRIRISRNKISNNRELDTFIQEIV 125 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 K +L T + + ++Q E G + Sbjct: 126 N-----------KPVLTITDVDTNPLFFEGKFDKNLK---LDQGNETNWIVPFAPGSA-- 169 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 + + ++ +K + + + K + + Sbjct: 170 ---ISQPNPQNPANNQVLIELKDKKAQLEWSKATEYISKLGHGKNRILIWSNIVELKKIA 226 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 + + SG ++ + T + K Sbjct: 227 KEKFPAQWAKSGENIYNFVHVGEKTTPEF------------LQGNKILQPELKKYQFDAK 274 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 +++ ++QA+ I+G FT + A LA + G+ KL+ + V Sbjct: 275 KYLISDATVSQALNGKSFVITGRFTPQEAKQLALDINYGTADYKLDFLSASFVSKTKSDS 334 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 G AI + +I LF+++ YG G +A S+ L V LTL +++ + +I+ Sbjct: 335 VFIAGWIAIGLAIAIISLFLLINYGLLGALATISLSLYVFLTLLFFTIVRGEYSPITISA 394 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 +V+GIG+ +D+N++ E + SV + +++ I DSNIT LIA +VLFF Sbjct: 395 LVVGIGMNIDANVISFEVFKSRIYSGNSVLKANYQANRLSFNAILDSNITTLIAALVLFF 454 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAM----------------MIFIIRYKKMKSI 523 FG V+ F+IT+ SI+ ++ I + + + K Sbjct: 455 FGTKNVKSFSITLIFSIIFTLIVTIGFTKFFTSFILKANFFQNNEKKLWLLGIKKYYLRK 514 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID----FKGGI 579 + + D I + + ++ G + F GG Sbjct: 515 YQRGYNSIYSQIDYEKIYKYTRWLPLILFLGSIIVFAVFAGIYRSFGSGFNLAIDFSGGT 574 Query: 580 QLGVLANRPV-------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + ++ + S L+S I + N + + Sbjct: 575 NFLIESSNSSYDLITKEKAEKIISFLDSQNINKSNSTILLNPLNENGNIFNLEIKTKLDL 634 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + + + + +++LI I+ V I+ I + I+ IRFKW F Sbjct: 635 ATKIASLNAAIQNNFSNIRMTNYSISNEEAQKLIFNAILSVGIALIFVTIFTLIRFKWTF 694 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR------- 745 +L I +L+ ++ L + IE + V A+LTLIGY+VND +VV+DR++ Sbjct: 695 SLAIIFSLLFNVLMVLLAIIITRIEISQNLVVAILTLIGYTVNDTIVVFDRVKARFSEIN 754 Query: 746 -KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 +N+ + +++ ++I ET RSVYTS+ ++++ + ++ S+ F++ M G Sbjct: 755 HENVYKFDK---IKEISLQAIRETAKRSVYTSLTTILTIVVLMIFYESIDIVFSLTMLIG 811 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 +++ SS+FIA I + + +R + + Sbjct: 812 VIIGTYSSLFIATRIWIILESYRNRKKEM 840 >gi|254511526|ref|ZP_05123593.1| protein-export membrane protein SecD [Rhodobacteraceae bacterium KLH11] gi|221535237|gb|EEE38225.1| protein-export membrane protein SecD [Rhodobacteraceae bacterium KLH11] Length = 553 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 197/547 (36%), Positives = 303/547 (55%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43 W +L ++C +GL +ALPN Q+ ++PS +P + Sbjct: 7 WKRVLIWLVCVVGLFMALPNAFYTRVEQSNDANTAIELGIDTPEMQAQAAQWPSWLPSSL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100 ++LGLDLRGG+HL+ EV +D ++ E+R L+ E V ++R+ ++I + Sbjct: 67 VNLGLDLRGGAHLLAEVKVEDVYEARMEAMWPEIRDALRDERATVGTIRKQPSAPDEIRV 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + V + V + V + I + LS+ + Sbjct: 127 RISQPEGMPRALEVVRGLARQVQTLTGVGATD-IEARAEGDIIVVQLSEAEKLASDDRTV 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217 Q++EIIR+RID++G E TIQR G+ RILIQ+PG L+ ++GTTA+++F+ V Sbjct: 186 RQALEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSAGELKGIIGTTAQLTFNPVVGP 245 Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 + V + G Y++ ++G L A +FD +P V F+ Sbjct: 246 ANSLDDSVRPGQKVVPSIEEGGRLYVITSAPVVTGEELVDAQPSFDQNG-RPAVSFRFNT 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR+F + T +NIG P A+VLD V++APVI IP G I+G+FT+E + LA +LR Sbjct: 305 SGARKFGDYTLENIGAPFAIVLDDEVISAPVIQSHIPGGSGIITGDFTVEESTNLAVLLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L +EER +G +LG DSI G A + V +++FM + YG +G+ A+ ++ L Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKVATIVAFVAVLVFMALSYGLFGIFANIALIL 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 NV L LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++++G+ Sbjct: 425 NVGLLFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKSAKGPARAIELGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 +A S I D+N+T I +LF G G VRGFAIT+GL IL S+FTAI + R M++ Sbjct: 485 EKALSAILDANVTTFITATILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVMWFE 544 Query: 517 YKKMKSI 523 ++ K+I Sbjct: 545 RRRPKTI 551 Score = 155 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 95/208 (45%), Gaps = 4/208 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 GD + V + + +GP++ ++ I G V I++ +A+L+ Sbjct: 346 IITGDFTVEESTNLAVLLRAGALPAGLEFLEERTIGPELGQDSIDAGKVATIVAFVAVLV 405 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ + + F + A LIL++ G +L G L +A ++ +G +V+ V++++ Sbjct: 406 FMALSYGL-FGIFANIALILNVGLLFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFE 464 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ +K ++ I+ + L + ++ FI+ + G + FAI + Sbjct: 465 RIREELK---SAKGPARAIELGYEKALSAILDANVTTFITATILFAMGSGPVRGFAITLG 521 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830 GI+ + ++IF+ +++ ++ R Sbjct: 522 LGILTSVFTAIFVTRLMIVMWFERRRPK 549 >gi|292492396|ref|YP_003527835.1| protein-export membrane protein SecF [Nitrosococcus halophilus Nc4] gi|291580991|gb|ADE15448.1| protein-export membrane protein SecF [Nitrosococcus halophilus Nc4] Length = 314 Score = 238 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 98/294 (33%), Positives = 165/294 (56%), Gaps = 2/294 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM R + S+ + S+ L GLN+GIDF GG L V +PV+ Sbjct: 1 MKLYKKSFRIDFMGKRRLALIFSVALLLTSLGSLIFQGLNFGIDFTGGTLLEVGYEQPVE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 LS VR +L G Q+F ++ L+RL + A+ E++ +T Sbjct: 61 LSDVRQDLGEAGFGGAIVQHFGTTRDVLIRLAPGAERNNAELS-NEVLATLQANGDNPAT 119 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGPK+ EL +G + ++ + I +LIY+ +RF++ A+G++ L+ D+ LG Sbjct: 120 MRRVEFVGPKVGEELTEQGGLAMLYALIGILIYVSLRFEYRLAIGSVAALVHDVLIVLGL 179 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+L +EF+LT +AA+L +IGYS+ND +VV DR+R+N + + +++ S+N+TL Sbjct: 180 FSLLQLEFDLTVLAALLAVIGYSLNDTIVVSDRIRENFRKIRKG-TAVQVVNTSLNQTLS 238 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R+V TS+ + + + ++GG I SF++ + G++V SSI+IA+P L + Sbjct: 239 RTVMTSLTTLLVLFALFIFGGEAIHSFSMALIMGVLVGTYSSIYIASPTALALG 292 >gi|262274804|ref|ZP_06052615.1| protein-export membrane protein SecF [Grimontia hollisae CIP 101886] gi|262221367|gb|EEY72681.1| protein-export membrane protein SecF [Grimontia hollisae CIP 101886] Length = 316 Score = 238 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 166/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F L+ ++I FMR +S L SI L T LN+G+DF GG + V +P Sbjct: 1 MFQLLKPDLSIDFMRWSKPAFFLSALMIAASIFSLSTRWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL ++R +L++ GD QNF ++ +VRL+ + D + +++ Sbjct: 61 DLPLIRESLQAKGFGDAIVQNFGTARDVMVRLRPRD-DVQGELLGNQILNAIKAGTGQAV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S + +L+Y+ +RF+W A GA+ +L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSLRFEWRLAAGAVVSLAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ IE +LT VAA+LT++GYS+ND +VVYDR+R+N + ++++ S+++TL Sbjct: 180 IFSFLQIEVDLTIVAALLTVVGYSLNDTIVVYDRIRENFRKMRKG-DASEIVNASVSQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + + GG++I FA + GI + SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFLQGGAMIHGFATALLIGITIGTYSSIYVASALALKLGITRE 297 >gi|254476909|ref|ZP_05090295.1| protein-export membrane protein SecD [Ruegeria sp. R11] gi|214031152|gb|EEB71987.1| protein-export membrane protein SecD [Ruegeria sp. R11] Length = 553 Score = 238 bits (605), Expect = 5e-60, Method: Composition-based stats. Identities = 203/547 (37%), Positives = 302/547 (55%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43 W +L ++C GLL+ALPN + ++PS +P N Sbjct: 7 WKRVLIWLVCVTGLLLALPNAFYTRVEQANDAAAEITLRGETPERLEVAGQWPSFLPSNL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI---QNKITL 100 ++LGLDLRGG+HL+ EV +D + E+R L+ E V + R+ + +I L Sbjct: 67 VNLGLDLRGGAHLLAEVKVEDVYAARMDALWPEVRDALRPERAEVGTFRRQPAPEGQIRL 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 ++ + V + S + ++I LS+ + Sbjct: 127 KISNPDGMTRALEVVRGLANPITSLTGAGASDITVS-GAGDILTIELSEAEKLASDDRTV 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217 Q++EI+R+RID++G E TIQR G+ RILIQ+PG S L+ ++GTTA+++F+ V Sbjct: 186 RQALEIVRRRIDEVGTREPTIQRQGTDRILIQVPGIGSASELKAIIGTTAQLTFNPVVGR 245 Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 ++ G V D G Y VE ++G L A +FD +P V F+ Sbjct: 246 GSDADANPGVGNKVIPSLDESGIYYTVEAAPVVTGEELVDAQPSFDQNG-RPAVSFRFNT 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR+F + T +NIG P A+VLD V++APVI I G I+GNFTIE + +A +LR Sbjct: 305 TGARKFGDYTAENIGSPFAIVLDEEVVSAPVIQAHIAGGSGIITGNFTIEESTNMAILLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L +EER +G +LG DSI G A V V +++FM + YG +G+ A+ ++ L Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKVATVVAFVGVLVFMALSYGLFGVFANIALIL 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 N+ L LSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++D G+ Sbjct: 425 NIGLIFGALSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 S+A S I D+NIT I V+LF G G VRGFAIT+GL I+ S+FTAI + R +++ Sbjct: 485 SKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFE 544 Query: 517 YKKMKSI 523 ++ K+I Sbjct: 545 RRRPKTI 551 Score = 159 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 89/175 (50%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G V +++ + +L+++ + + F + A LIL+I G +L G Sbjct: 379 TIGPELGQDSIDAGKVATVVAFVGVLVFMALSYGL-FGVFANIALILNIGLIFGALSLIG 437 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K ID+ ++ L + Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELKA---GRGPARAIDEGYSKALSAILDA 494 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + G + FAI + GI+ + ++IF+ I++ ++ R Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFERRRPK 549 >gi|23014245|ref|ZP_00054072.1| COG0342: Preprotein translocase subunit SecD [Magnetospirillum magnetotacticum MS-1] Length = 522 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 198/531 (37%), Positives = 317/531 (59%), Gaps = 25/531 (4%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W + L ++I +G++ A PN L + D+ P +SLGLDL+GGS+L+LEVD Sbjct: 5 PKWKIALVAIISMLGVIFASPNMLSRERADQMPHWF--QPVSLGLDLQGGSYLLLEVDTA 62 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 L + +R+ L+KE + + + +++ ++ + + + + Sbjct: 63 YVFREQLSSLVEGVRTVLRKEKVKYSDLGAKGDLVSVRIIEAEERAKARELLRKIDSSAS 122 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + + + S + + AIEQS+EI+R+RID++G E +IQR Sbjct: 123 -----------VDAKDDGTMVLKYSDVAVKARKAAAIEQSLEIVRRRIDELGTREPSIQR 171 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL---------- 233 G RI++QLPG +DP R++ LLG TAK++FH + + S G Sbjct: 172 QGEDRIVVQLPGVKDPDRIKALLGKTAKLTFHLLDDSTSADEAAKGRVPPGSMLLPSAEK 231 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 Y+V ++E+ G L + A ++ +PVV F+ GA++F + TR+N GK Sbjct: 232 ERGMPETYVVRKRIEVGGDMLVDSKATYNEG--RPVVSFRFNAAGAKKFGDATRENAGKF 289 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+VLD +V++AP IN+ I G ISG+F+++ A L+ +LRAG+LP L ++EER VG Sbjct: 290 LAIVLDDKVISAPRINEPILGGSGIISGSFSVQQAQDLSLLLRAGALPAPLQVLEERTVG 349 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 DLG+DSI G A + GL L+V+ MI++YG G +AD ++ LN+IL LA LS LGATLT Sbjct: 350 PDLGADSIQAGAVASLLGLALVVVLMIIVYGTLGALADLAMVLNLILLLASLSALGATLT 409 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAG+VL +G+AVD+N+L+ ER+REE R +S+ ++ G+ RA+ TIFD+++T L+A Sbjct: 410 LPGIAGVVLTMGMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVA 469 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +LF FG G +RGFA+T+ L +L S+FTA+ + R M++ +R++++KS+ Sbjct: 470 AALLFQFGSGPIRGFAVTLTLGLLASLFTAVLVNRIMVVSWVRWRRLKSLP 520 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 74/174 (42%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I+ G V ++ +++ + I + A ++L++ L + G Sbjct: 349 GPDLGADSIQAGAVASLLGLALVVVLMIIVYG-TLGALADLAMVLNLILLLASLSALGAT 407 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A V+ +G +V+ V++Y+RMR+ + S I + G + Sbjct: 408 LTLPGIAGVVLTMGMAVDANVLIYERMREEQR---NGRSIMSAIQAGYDRAFGTIFDAHV 464 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ + +G I FA+ + G++ + +++ + +++ WR + Sbjct: 465 TTLVAAALLFQFGSGPIRGFAVTLTLGLLASLFTAVLVNRIMVVSWVRWRRLKS 518 >gi|95929298|ref|ZP_01312042.1| protein-export membrane protein SecD [Desulfuromonas acetoxidans DSM 684] gi|95134796|gb|EAT16451.1| protein-export membrane protein SecD [Desulfuromonas acetoxidans DSM 684] Length = 532 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 194/541 (35%), Positives = 305/541 (56%), Gaps = 25/541 (4%) Query: 1 MRNNP-WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M N+ +L + +L P + S+ + + +A + I LGLDL+GG HLVL Sbjct: 1 MSNSIKLRGLLVLFCLVLSVLALGPTLMKDSLPNWWKNAF--DPIHLGLDLQGGMHLVLG 58 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLF 118 V+ D V L D+ S L+ E + + R+ +++ ++ D+ + + Sbjct: 59 VEVDKAVESRLDSVVDQTESLLRDEDVIFKRIERKSDDRMVITVYDADAGAEVDALIQEN 118 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + + + S I + +A+ Q++E +R R+DQ G+SE Sbjct: 119 FPNLE---PMTLDASGGYIEKN----YRFSDQEIANIKDYAVRQALETMRNRVDQFGLSE 171 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG--------- 229 +QR +RILIQLPG +DP R LLG TA++ F V + + + G Sbjct: 172 PVLQRQSDNRILIQLPGVKDPQRAIDLLGKTARLEFKMVDESADIQQALQGNLKPGTKVL 231 Query: 230 -----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284 + + N +V +K ++G L A D + ++P V I F+ +GA+RF + Sbjct: 232 YEHRVDPMTKKATENPLVVFEKTALTGDLLADAQVRIDTRFNEPYVAIEFNAVGAQRFDQ 291 Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344 +T N+GK +A+VLD + +AP I + I G AQISG+FT + A LA +LRAGSLP + Sbjct: 292 ITAANVGKRMAIVLDDTIYSAPNIRERISGGSAQISGSFTEQEATDLAIVLRAGSLPAPV 351 Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404 I+E+R VG LG DSI KG ++V G VL+VL M++ Y GLVA+ ++ LN++ +A+ Sbjct: 352 KILEDRTVGPSLGHDSISKGVNSVVIGAVLVVLMMLLYYRGAGLVANVALALNLLFIMAM 411 Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464 L+L ATLTLP +AGIVL +G+AVD+N+L+ ER+REE R +S ++D GF++A+ TI Sbjct: 412 LTLFKATLTLPGLAGIVLTVGMAVDANVLIFERVREELRHGKSARVAIDAGFAKAFVTIV 471 Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 D+NIT LIA +VLF FG G V+GFA+T+ + I+ SMFTAI + R + ++ +++K + Sbjct: 472 DANITTLIAALVLFQFGTGPVKGFAVTLSVGIIASMFTAIFVSRLIFDLVLEGRQVKKLS 531 Query: 525 I 525 I Sbjct: 532 I 532 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 104/262 (39%), Gaps = 9/262 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ----YQPGDSV 629 + + + A + + ++ + N R+ G Sbjct: 272 FNEPYVAIEFNAVGAQRFDQITAANVGKRMAIVLDDTIYSAPNIRERISGGSAQISGSFT 331 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 Q + + + I VGP + + I KG+ V+I A+ +++ + + ++ Sbjct: 332 EQEATDLAIVLRAGSLPAPVKILEDRTVGPSLGHDSISKGVNSVVIGAVLVVLMMLLYYR 391 Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 L A L L++ + LF L +A ++ +G +V+ V++++R+R+ ++ Sbjct: 392 -GAGLVANVALALNLLFIMAMLTLFKATLTLPGLAGIVLTVGMAVDANVLIFERVREELR 450 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809 S R ID + V ++ I+ L + +G + FA+ ++ GI+ + Sbjct: 451 ---HGKSARVAIDAGFAKAFVTIVDANITTLIAALVLFQFGTGPVKGFAVTLSVGIIASM 507 Query: 810 SSSIFIAAPIL-LFIYDWRAKN 830 ++IF++ I L + + K Sbjct: 508 FTAIFVSRLIFDLVLEGRQVKK 529 >gi|302342506|ref|YP_003807035.1| protein-export membrane protein SecD [Desulfarculus baarsii DSM 2075] gi|301639119|gb|ADK84441.1| protein-export membrane protein SecD [Desulfarculus baarsii DSM 2075] Length = 541 Score = 237 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 182/544 (33%), Positives = 288/544 (52%), Gaps = 27/544 (4%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 N + +++ IGLL +PN +P+ +P +P ++I LGLDL+GG HLVLEV Sbjct: 4 NLTLRTAIVAVVIFIGLLFLMPNVVPKMP-AWWPGFLPSDKIRLGLDLQGGMHLVLEVKV 62 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122 V ++ + EL LK E N+I ++ A + D + Sbjct: 63 AQAVEASVERTAQELERRLKSEVRATRPKAIGGNQIAITVAGENDLAKLKDIIENQYSN- 121 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + + E+ + L I + A Q++E+IR RIDQ G++E I Sbjct: 122 ----DYEIASTKPLDRGRSEVVLRLKAEAIADIEKQASAQALEVIRNRIDQFGVAEPEIV 177 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------ 236 RIL+QLPG ++P R L+G TA++ F V Sbjct: 178 PQEGGRILVQLPGVKEPKRALALIGKTAQLEFRLVDDTIDANSATMDSIPPGSQLLQMYR 237 Query: 237 --------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPV-VDISFDEMGARRFFEVTR 287 + +V + ++G ++ A DP V ++F+ GA F EVT Sbjct: 238 KDPITGRTVKSPIVVRARRAMTGENITDARVRPDPDYPGNYLVLVAFNSRGAADFAEVTT 297 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 N+ + LA+VLDG+V +AP I + I G+A+I+G+F ++ A LA +LR+G+LP + ++ Sbjct: 298 KNVKRRLAIVLDGKVQSAPTIQEPITGGEARITGDFGLDEAKDLAVVLRSGALPAPIVVL 357 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG DSI +G +++ G ++VLF+++ Y G++A+ ++ N++L L + L Sbjct: 358 EERTVGPSLGQDSINQGFLSMIVGFGVVVLFILIYYKASGIIANMALLANLVLILGAMGL 417 Query: 408 ------LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461 ATLT+P IAGI+L IG+AVD+N+L+ ERIREE R ++ +++ G+ RA Sbjct: 418 LGAMPEFQATLTMPGIAGIILTIGMAVDANVLIFERIREELRAGKTPAAAVEAGYGRATM 477 Query: 462 TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521 TI D+NIT LI +VL FG G VRGFA+T+ L I S+FTAI++ R + +I+R + K Sbjct: 478 TILDANITTLIVALVLLQFGTGPVRGFAVTLSLGIASSLFTAITLTRVVFDWILRKYQPK 537 Query: 522 SIDI 525 + I Sbjct: 538 KLSI 541 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 81/182 (44%), Gaps = 11/182 (6%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI- 716 GP + ++ I +G + +I+ ++++I I +K + A L+ ++ LG L G Sbjct: 363 GPSLGQDSINQGFLSMIVGFGVVVLFILIYYK-ASGIIANMALLANLVLILGAMGLLGAM 421 Query: 717 -----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 + +A ++ IG +V+ V++++R+R+ ++ + ++ Sbjct: 422 PEFQATLTMPGIAGIILTIGMAVDANVLIFERIREELRA---GKTPAAAVEAGYGRATMT 478 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ I L + +G + FA+ ++ GI + ++I + ++ + + Sbjct: 479 ILDANITTLIVALVLLQFGTGPVRGFAVTLSLGIASSLFTAITLTR-VVFDWILRKYQPK 537 Query: 832 RI 833 ++ Sbjct: 538 KL 539 >gi|89068237|ref|ZP_01155647.1| protein-export membrane protein SecD [Oceanicola granulosus HTCC2516] gi|89046154|gb|EAR52212.1| protein-export membrane protein SecD [Oceanicola granulosus HTCC2516] Length = 553 Score = 237 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 192/549 (34%), Positives = 299/549 (54%), Gaps = 31/549 (5%) Query: 4 NPWLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPK 41 W IL + +GL +A+PNF + ++PS +P Sbjct: 5 PLWRRILIWLTVAVGLFLAMPNFFYGRVEQSNDAEKAIEAGLSTEELAAQAAQWPSWLPD 64 Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKI 98 ++LGLDLRGG+HL+ EV+ D + E+R L E + + + +++ Sbjct: 65 GLVNLGLDLRGGAHLLAEVNVADVYETRMDGLWPEVRDTLAAERDTLGFVTREDSAPDEL 124 Query: 99 TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158 + ++ E + + + + + ++I LS+ Sbjct: 125 KVRISEPEGAERALELARGLARPIATLSGAGASDIEVT-ADGPVLTIRLSEAERAATDDR 183 Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV- 217 + QS+EIIR+RID++G E +IQR G RILIQ+PG L+ ++GTTA+++F V Sbjct: 184 TVRQSLEIIRRRIDEVGTREPSIQRQGDDRILIQVPGIGSAQELKDIIGTTAQLTFQPVV 243 Query: 218 ---LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274 + G + D +G Y++E ++G L A FD +P V F Sbjct: 244 SRTSDPDEAAGMGNELVPALDEEGTYYILESAPVVTGEDLVDAQPGFDQNN-RPAVTFRF 302 Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334 + GARRF + T N+G P A+VLD V++AP IN+AI G I+GNFT+E++ LA + Sbjct: 303 NPAGARRFGDYTAANVGAPFAIVLDEEVISAPTINEAIRGGSGIITGNFTVESSTDLAVL 362 Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394 LRAG+LP L +EER VG +LG DSI GT A + +++FM + YG +GL A+ ++ Sbjct: 363 LRAGALPAGLTFLEERTVGPELGQDSIDAGTVACIVAFAAVMVFMALSYGLFGLFANVAL 422 Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454 +N+ + LLSL+G TLTLP IAGIVL IG+AVD+N+LV ERIREE + + ++++ Sbjct: 423 LVNIAMIFGLLSLIGGTLTLPGIAGIVLTIGMAVDANVLVFERIREEVKTARGPARAIEL 482 Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 G+ +A S I D+NIT L+ ++L+ G G VRGFAIT+GL I+ S+FTAI + R +++ Sbjct: 483 GYEKALSAIVDANITTLMTAIILYAMGSGPVRGFAITLGLGIVTSVFTAIFVTRLLIVTW 542 Query: 515 IRYKKMKSI 523 ++ K+I Sbjct: 543 FDRRRPKTI 551 Score = 152 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 87/173 (50%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ ++ I G V I++ A+++++ + + F L A L+++I G +L G Sbjct: 381 GPELGQDSIDAGTVACIVAFAAVMVFMALSYGL-FGLFANVALLVNIAMIFGLLSLIGGT 439 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V+V++R+R+ +K T+ I+ + L V ++ Sbjct: 440 LTLPGIAGIVLTIGMAVDANVLVFERIREEVK---TARGPARAIELGYEKALSAIVDANI 496 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ + + G + FAI + GIV + ++IF+ +++ +D R Sbjct: 497 TTLMTAIILYAMGSGPVRGFAITLGLGIVTSVFTAIFVTRLLIVTWFDRRRPK 549 >gi|126739016|ref|ZP_01754710.1| protein-export membrane protein SecD [Roseobacter sp. SK209-2-6] gi|126719633|gb|EBA16341.1| protein-export membrane protein SecD [Roseobacter sp. SK209-2-6] Length = 553 Score = 237 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 209/547 (38%), Positives = 303/547 (55%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43 W +L ++C GLL+ALPN + ++P +P + Sbjct: 7 WKRVLIWLVCVTGLLLALPNGFYTRVEQANDAAAEIIAKGETPERLEIAGQWPDYLPSSL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100 ++LGLDLRGG+HL+ EV +D + E+R L+ E V S R+ Q +I L Sbjct: 67 VNLGLDLRGGAHLLAEVQVEDVYAARMDALWPEVRDVLRPERATVGSFRRQQAPEGEIRL 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + V + S + I++ LS+ + Sbjct: 127 KISKPEGMARALELVRGLASPITSLTGAGANDIEVSGAD-DIITVQLSEAEKLASNDRTV 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217 QS+EIIR+RID++G E TIQR G+ RILIQ+PG S L+ L+GTTA+++F+ V Sbjct: 186 RQSLEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSASELKALIGTTAQLTFNPVVGR 245 Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 ++ G V D G Y +E ++G L A +FD +P V+ F+ Sbjct: 246 GSDPDASAGVGNKVVPSIDEPGTYYTIEAAPVVTGEELVDAQPSFDQNG-RPAVNFRFNT 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR+F + T +NIG P A+VLD V++APVI IP G I+GNFTIE + LA +LR Sbjct: 305 SGARKFGDYTAENIGAPFAIVLDDEVISAPVIQSHIPGGSGIITGNFTIEESTNLAILLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L+ +EER +G +LG DSI G A V V +++FM + YG +G+ A+ ++ L Sbjct: 365 AGALPAGLDFLEERTIGPELGQDSIDAGKIATVVAFVAVLVFMALSYGLFGIFANVALIL 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 NV L LSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++D G+ Sbjct: 425 NVALIFGFLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPAKAIDEGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 S+A S I D+NIT I V+LF G G VRGFAIT+G+ IL S+FTAI + R M++ Sbjct: 485 SKALSAILDANITTFITAVILFAMGSGPVRGFAITLGMGILTSVFTAIFVTRLMIVMWFE 544 Query: 517 YKKMKSI 523 ++ K+I Sbjct: 545 RRRPKAI 551 Score = 148 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 92/176 (52%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + +++ +A+L+++ + + F + A LIL++ GF +L G Sbjct: 379 TIGPELGQDSIDAGKIATVVAFVAVLVFMALSYGL-FGIFANVALILNVALIFGFLSLIG 437 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K ID+ ++ L + Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELKA---GRGPAKAIDEGYSKALSAILDA 494 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ FI+ + + G + FAI + GI+ + ++IF+ +++ ++ R A Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGMGILTSVFTAIFVTRLMIVMWFERRRPKA 550 >gi|56697180|ref|YP_167544.1| preprotein translocase subunit SecD [Ruegeria pomeroyi DSS-3] gi|56678917|gb|AAV95583.1| protein-export membrane protein SecD [Ruegeria pomeroyi DSS-3] Length = 553 Score = 237 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 198/547 (36%), Positives = 304/547 (55%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43 W +L ++C GL++ALPN + ++P MP + Sbjct: 7 WKRVLIWLVCIGGLVLALPNAFYTRVEQSNDARAAIELRGETPELTATAAQWPDFMPSSL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100 ++LGLDLRGG+HL+ EV D + E+R+ L+ V ++R+ ++I + Sbjct: 67 VNLGLDLRGGAHLLAEVKVSDVYAARMDAMWPEIRNSLRDARDTVGTIRKQPSKPDEIRV 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + V + + + + E+ + LS+ + Sbjct: 127 KISQPEGMSRALELVRGLARPIQTLTGAGSNDIEV-RGEGDEVIVTLSEAERLATDDRTV 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 Q++EI+R+RID++G E TIQR G+ RILIQ+PG S L++++GTTA+++F+ V+ Sbjct: 186 RQALEIVRRRIDEVGTREPTIQRQGADRILIQVPGIGSASELKEIIGTTAQLTFNPVISR 245 Query: 221 NSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 + GV D +G Y +E ++G L A FD +P V+ F+ Sbjct: 246 GTDANARVGVGEKLAPSLDQEGVFYTIEAAPVVTGEELVDAQPAFDQNG-RPAVNFRFNT 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR+F + TRDN+G P A+ LDG V++APVI IP G I+GNFT+E + LA +LR Sbjct: 305 SGARKFGDYTRDNVGAPFAITLDGEVISAPVIQSHIPGGSGIITGNFTVEESTNLAVLLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L +EER +G +LG DSI G A V V ++ FM YG +G+ A+ ++ + Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKVATVVAFVAVLGFMWASYGLFGIFANIALIV 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 NV L LLS++GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++++G+ Sbjct: 425 NVGLLFGLLSVIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKTAKGPARAIELGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 +A S I D+NIT I V+LF G G VRGFAIT+GL IL S+FTAI + R +++ Sbjct: 485 EKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLLVVTWFE 544 Query: 517 YKKMKSI 523 ++ K+I Sbjct: 545 RRRPKTI 551 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 89/175 (50%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G V +++ +A+L ++W + F + A LI+++ G ++ G Sbjct: 379 TIGPELGQDSIDAGKVATVVAFVAVLGFMWASYGL-FGIFANIALIVNVGLLFGLLSVIG 437 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K T+ I+ + L + Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---TAKGPARAIELGYEKALSAILDA 494 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + G + FAI + GI+ + ++IF+ +++ ++ R Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLLVVTWFERRRPK 549 >gi|322419803|ref|YP_004199026.1| protein-export membrane protein SecD [Geobacter sp. M18] gi|320126190|gb|ADW13750.1| protein-export membrane protein SecD [Geobacter sp. M18] Length = 532 Score = 237 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 188/540 (34%), Positives = 289/540 (53%), Gaps = 23/540 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ W + L + + P + + +PK++I LGLDL+GG+HLV+EV Sbjct: 1 MKGYTWRISLILIFIVASCVYLTPTLVDTLP-GWWSGLLPKDKIHLGLDLQGGTHLVMEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119 + V G L + + +L L + + + R +K+ L+ D + + V Sbjct: 60 ETQKAVEGSLDLIATDLEDSLASDNLRFKKVARLGGDKVQLTLYDRGSADKVQALVKKKY 119 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 + + + +++ A+ Q++E IR RIDQ G+SE Sbjct: 120 -------PDLETLPVFDEGGFVNMQLRINEKEAQVRKDRAVAQALETIRNRIDQFGVSEP 172 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS--- 236 IQR G + I++QLPG +DP R +L+G TA++ F V + + D Sbjct: 173 VIQREGINNIVVQLPGIKDPKRAIELIGKTARLEFKLVDESVNAATATASTVPEDDELLY 232 Query: 237 -----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 +V+ K I+G L A D + ++P V I F+ GAR F +V Sbjct: 233 EKRSDPATGAVTETPLVVKKKAMITGELLTDAQIRIDSQYNQPYVAIDFNSTGARLFDQV 292 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 T N+GK A+VLD + +APVI + I G AQISG+FT + A LA +LRAGSLP + Sbjct: 293 TAANVGKRFAIVLDSNIYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVK 352 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 I++ VG LG DSI+KG A + G+VL+V FM + Y G+VA+ + LN++ + +L Sbjct: 353 ILQNVTVGPSLGKDSIHKGLVAGLIGVVLVVSFMALYYKLSGMVANLGMVLNILFLMGVL 412 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 S LGATLTLP IA IVL IG++VDSN+L+ ERIREE R ++ +LD G+ +A+ TI D Sbjct: 413 SALGATLTLPGIAAIVLLIGMSVDSNVLIFERIREELRLGKTPHAALDAGYDKAFLTIMD 472 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 S++TALI VLF FG G V+GFA+++ L I+I++FT++ + + + +K + I Sbjct: 473 SHVTALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLLATKVLFDAFLDRVHVKRLSI 532 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 91/181 (50%), Gaps = 5/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 VGP + ++ I KG+V +I + ++ ++ + +K + A ++L+I +G + Sbjct: 355 QNVTVGPSLGKDSIHKGLVAGLIGVVLVVSFMALYYKLS-GMVANLGMVLNILFLMGVLS 413 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G L +AA++ LIG SV+ V++++R+R+ ++L + +D ++ Sbjct: 414 ALGATLTLPGIAAIVLLIGMSVDSNVLIFERIREELRL---GKTPHAALDAGYDKAFLTI 470 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + + A I+ + +G + FA+ ++ GI++ +S+ +A +L + R R Sbjct: 471 MDSHVTALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSL-LATKVLFDAFLDRVHVKR 529 Query: 833 I 833 + Sbjct: 530 L 530 >gi|148554373|ref|YP_001261955.1| preprotein translocase subunit SecD [Sphingomonas wittichii RW1] gi|148499563|gb|ABQ67817.1| protein-export membrane protein SecD [Sphingomonas wittichii RW1] Length = 531 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 190/531 (35%), Positives = 311/531 (58%), Gaps = 13/531 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W V ++ G+L++LP+F+P+S ++R I+LGLDL GGSHL+LE D Sbjct: 5 PRWKVWSICLLLAAGILLSLPSFIPESTIERAGLHGLPR-INLGLDLSGGSHLMLEADTT 63 Query: 64 DFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + +++R+ +++ I + + +++ D+ + +++ Sbjct: 64 DLAKQNIAKMEEQVRTEMRRADPPIAIGDISTTGGRLSFFVRDASRIDAAVERIRT---L 120 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + + I + ++ + Q A++ + E++R+RID++G E TI Sbjct: 121 TQPSGMTGQRDWDVQVVDSTRIVLTPTKQGLAQATDSAMQVATEVVRKRIDEMGTREPTI 180 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD---- 237 R G+ RI++Q+PG Q+P+ L+ LLG TAK+ F V G + Sbjct: 181 IRQGAERIVVQVPGLQNPAALKALLGRTAKLEFKLVDLTADPAAVAQGRAPVGSEVVAYA 240 Query: 238 ---GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 V+ + +SG L A +++ +T++PVV I+F+ G R+F VT++N+GKP Sbjct: 241 EPGQAPIAVKRRAMLSGDELIDAKLSYNSQTNEPVVSITFNSEGGRKFARVTQENVGKPF 300 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A++LDG+VL+AP IN+ I G+AQISG FT ++A LA LR+G LP+ L +VEER VG Sbjct: 301 AMILDGKVLSAPNINEPILGGQAQISGRFTTDSANQLAIALRSGKLPVALKVVEERTVGP 360 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 DLG+DSI GT A V +V +V+FM+V YG++G A+ ++ +NV + L +++LL ATLTL Sbjct: 361 DLGADSIRAGTLASVIAVVGVVIFMLVSYGRFGFYANLAVVINVFVILGIMALLNATLTL 420 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAG VL IG AVD+N+L+NER+REE R+ +S +++ G+ A TIF++N+T IA Sbjct: 421 PGIAGFVLTIGTAVDANVLINERVREELRRGRSPTQAVEHGYKEASRTIFEANVTHAIAG 480 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +++F G G V+GFA+ + + I S+FTA+ R ++ +R+K+ SI I Sbjct: 481 LIMFVLGSGQVKGFAVVLLIGIATSVFTAVVFTRMLVALWLRHKRPTSIHI 531 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 76/174 (43%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + IR G + +I+ + ++I++ + + F A +++++ LG AL Sbjct: 359 GPDLGADSIRAGTLASVIAVVGVVIFMLVSYG-RFGFYANLAVVINVFVILGIMALLNAT 417 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A + IG +V+ V++ +R+R+ ++ S ++ E ++ Sbjct: 418 LTLPGIAGFVLTIGTAVDANVLINERVREELR---RGRSPTQAVEHGYKEASRTIFEANV 474 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I+ L M V G + FA+ + GI + +++ ++ + + Sbjct: 475 THAIAGLIMFVLGSGQVKGFAVVLLIGIATSVFTAVVFTRMLVALWLRHKRPTS 528 >gi|255658296|ref|ZP_05403705.1| protein-export membrane protein SecF [Mitsuokella multacida DSM 20544] gi|260849612|gb|EEX69619.1| protein-export membrane protein SecF [Mitsuokella multacida DSM 20544] Length = 304 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 145/296 (48%), Gaps = 1/296 (0%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 + R IS L I + + G N+GIDF GG + + ++PV ++ VR+ Sbjct: 1 MLKFDIAGHRKIWFLISALIIIPGLICMAVRGFNFGIDFTGGTIIDLKFSQPVSIAEVRT 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 +L + D + Q + + + + V + V + E Sbjct: 61 SLAKYDLDDATIQLSGAQSDVKESEDVMIRTRDLEEDQRKEVMATLKTDVGDYQVLREEK 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG I ELI ++ +++S +++Y+ RF+ F + A+ LI DI L F+L Sbjct: 121 VGATIGGELITNAVLALVVSWALIILYVAYRFELRFGIAAVLALIHDILIVLAVFSLTQR 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775 + + + +AA+LT++GYS+ND +V++DR+R+N+KL+ + +L+++SI +TL RS+YT Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGNIDELVNRSIYQTLTRSLYT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + +GG FA + G V SSIFIA+P+ + +W K Sbjct: 241 VFTVLFTTAALYFFGGDTTKDFAFALLVGFTVGCYSSIFIASPLWIVFRNWGEKKK 296 >gi|308189857|ref|YP_003922788.1| protein-export membrane protein [Mycoplasma fermentans JER] gi|319777050|ref|YP_004136701.1| protein-export membrane protein [Mycoplasma fermentans M64] gi|307624599|gb|ADN68904.1| protein-export membrane protein [Mycoplasma fermentans JER] gi|318038125|gb|ADV34324.1| Protein-export membrane protein [Mycoplasma fermentans M64] Length = 867 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 141/865 (16%), Positives = 315/865 (36%), Gaps = 73/865 (8%) Query: 1 MRN----NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56 MR + W + I I +IA+ + +L ++ GG + Sbjct: 9 MRKIFSWSNWKRWVVLSITLISTIIAIVCGSL---------FYISKKPNLSIEYGGGVEI 59 Query: 57 VLEVD--EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114 +++ + + + ++ + L + + + Sbjct: 60 LVQAQKNGKKVNDKYAKNIANTMDDRLTG------GIAFNGTTVNVEGDGILKITQNGKL 113 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 + + + ++ P L + +++ IE + +++ + Sbjct: 114 SSKEKEELEKIVSSKPNLILTDGDMIPLFVRGKFNESREKIDYSRIEDYIPPLKENGAKF 173 Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234 + + R + + ++ Sbjct: 174 KFIPPSEKG-----------------RSGYYGIDVSLRNNAAADEWYKATEYITKNNKDP 216 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 + + + T +F +G + + + N K Sbjct: 217 KKRKILMWLN----LDALVKFAKTEYASDWKEAGENPYNFVHIGNKALNDKGKPNALKEY 272 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 +L+ + + + + ISG F A AA + GS L I+ + A Sbjct: 273 EFKGTNYLLSEAGLREPLKGTQFFISGRFNEAQAKKTAANINFGSANYDLKILSSNYIEA 332 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 S+S A +I +FMIV YG G ++ SI L + LTL L ++L + Sbjct: 333 SKTSNSFRSALLAGAVVFSIIAVFMIVNYGLLGALSTISIALYMFLTLLLFTVLRGEYSP 392 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 +IA +++GIG++VDSNI+ ER++ E + ++ R +I D+NI L+ + Sbjct: 393 VTIAALIIGIGISVDSNIITFERLKNEVYAGDRLKKAMKNANHRTLGSILDANILTLLIS 452 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPL 528 VLFFFG ++GF+I++ S+ + + R + + ++ I + Sbjct: 453 FVLFFFGTSTIKGFSISLVFSVTFILIVMLIFTRGLSVLLVNTGAFDKKLWLLGIRQKKI 512 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANR 587 F++ W S++F + I + +N + Sbjct: 513 LAPKKENKFNKFDFVKNSKWFGIGSLIFIVAGIIVFAVFAGINKDFWAGFNRSMEFGGGV 572 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLV-----------------RLQYQPGDSVA 630 + + S + I DI + + + + Q S Sbjct: 573 RISIESANSAYVNSDILDIQNKFMAHMNKWGIDPNKITFQIVPMDLGNGNFKLQIETSQD 632 Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIV--GPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + VL ++ + V + +L++ ++ + + + +++Y +IRF Sbjct: 633 LSNVLSKIESDVATFVSSGNKPRFIAYAISTSRAFDLLKYSMIAIAGAFLVVIVYTFIRF 692 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 KW +++ A+ L+ D+ ++ F + ++ + +AA+L++ +S+ND ++V++R+++ + Sbjct: 693 KWTYSIAAVFGLLHDVLMSIAFIVVARLQLSPIMIAALLSITAFSINDTIIVFERIKETI 752 Query: 749 KLYTTS-----ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 +++ + +I +T RS+YT++ +S+L + ++G + SF I M F Sbjct: 753 NTQYHGVFLSKALIKEIANNAIKDTFKRSLYTTLTTVVSILVLLMFGNATDLSFNIVMIF 812 Query: 804 GIVVAASSSIFIAAPILLFIYDWRA 828 G+VV + SSIFI + + + R Sbjct: 813 GLVVGSYSSIFICTWLWIKLETKRQ 837 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 77/205 (37%), Gaps = 4/205 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 I ++ + + R ++ + + +++ + + Sbjct: 302 NEAQAKKTAANINFGSANYDLKILSSNYIEASKTSNSFRSALLAGAVVFSIIAVFMIVNY 361 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 AL ++ L + TL F + E++ +AA++ IG SV+ ++ ++R++ + Sbjct: 362 GLLGALS-TISIALYMFLTLLLFTVLRGEYSPVTIAALIIGIGISVDSNIITFERLKNEV 420 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + + + TLG + ++ + + +G S I F+I + F + Sbjct: 421 YAGDR---LKKAMKNANHRTLGSILDANILTLLISFVLFFFGTSTIKGFSISLVFSVTFI 477 Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833 + + + + + A + ++ Sbjct: 478 LIVMLIFTRGLSVLLVNTGAFDKKL 502 >gi|225851087|ref|YP_002731321.1| protein-export membrane protein SecF [Persephonella marina EX-H1] gi|225646043|gb|ACO04229.1| protein-export membrane protein SecF [Persephonella marina EX-H1] Length = 313 Score = 236 bits (602), Expect = 1e-59, Method: Composition-based stats. Identities = 95/301 (31%), Positives = 163/301 (54%), Gaps = 2/301 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + + I F++ + G SIL + S+ ++FT G N+G+DF GG + V + PV Sbjct: 1 MRNFLNEPPNIDFLKIKKQGYIFSILLVLLSLGVIFTKGFNFGLDFTGGTSIQVRFSEPV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + VR+ L + + D Q +K A ++ K + Sbjct: 61 NTGDVRNALRIVNLQDSVIQEIGTDKREYEIRVSLKKGKSA-EIYAKVKKALDEKFKDKY 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I+ + +G + EL + + ++ +A+LIY+ RF+ F+LGA+ L D TLG Sbjct: 120 EIRKMDYIGAVVGEELRKASVYSIVAVLVAILIYVSYRFEPVFSLGAVIPLFHDAIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 FALFGIE NL +AA+LT++GYS+ND ++++DR+R+N+K+ + + L+++SINE L Sbjct: 180 IFALFGIEVNLAVIAAILTVLGYSLNDTIIIFDRIRENIKIRGKK-NLQLLVNQSINENL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ TS SVL + ++GG + FA+ + GIV SSI++A+PI++ + + K Sbjct: 239 ARTIITSGTTLFSVLALYLFGGESLKGFALALLIGIVFGTYSSIYVASPIIVDLERFLRK 298 Query: 830 N 830 Sbjct: 299 K 299 >gi|238809834|dbj|BAH69624.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 876 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 141/865 (16%), Positives = 315/865 (36%), Gaps = 73/865 (8%) Query: 1 MRN----NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56 MR + W + I I +IA+ + +L ++ GG + Sbjct: 18 MRKIFSWSNWKRWVVLSITLISTIIAIVCGSL---------FYISKKPNLSIEYGGGVEI 68 Query: 57 VLEVD--EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114 +++ + + + ++ + L + + + Sbjct: 69 LVQAQKNGKKVNDKYAKNIANTMDDRLTG------GIAFNGTTVNVEGDGILKITQNGKL 122 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 + + + ++ P L + +++ IE + +++ + Sbjct: 123 SSKEKEELEKIVSSKPNLILTDGDMIPLFVRGKFNESREKIDYSRIEDYIPPLKENGAKF 182 Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234 + + R + + ++ Sbjct: 183 KFIPPSEKG-----------------RSGYYGIDVSLRNNAAADEWYKATEYITKNNKDP 225 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 + + + T +F +G + + + N K Sbjct: 226 KKRKILMWLN----LDALVKFAKTEYASDWKEAGENPYNFVHIGNKALNDKGKPNALKEY 281 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 +L+ + + + + ISG F A AA + GS L I+ + A Sbjct: 282 EFKGTNYLLSEAGLREPLKGTQFFISGRFNEAQAKKTAANINFGSANYDLKILSSNYIEA 341 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 S+S A +I +FMIV YG G ++ SI L + LTL L ++L + Sbjct: 342 SKTSNSFRSALLAGAVVFSIIAVFMIVNYGLLGALSTISIALYMFLTLLLFTVLRGEYSP 401 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 +IA +++GIG++VDSNI+ ER++ E + ++ R +I D+NI L+ + Sbjct: 402 VTIAALIIGIGISVDSNIITFERLKNEVYAGDRLKKAMKNANHRTLGSILDANILTLLIS 461 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPL 528 VLFFFG ++GF+I++ S+ + + R + + ++ I + Sbjct: 462 FVLFFFGTSTIKGFSISLVFSVTFILIVMLIFTRGLSVLLVNTGAFDKKLWLLGIRQKKI 521 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANR 587 F++ W S++F + I + +N + Sbjct: 522 LAPKKENKFNKFDFVKNSKWFGIGSLIFIVAGIIVFAVFAGINKDFWAGFNRSMEFGGGV 581 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLV-----------------RLQYQPGDSVA 630 + + S + I DI + + + + Q S Sbjct: 582 RISIESANSAYVNSDILDIQNKFMAHMNKWGIDPNKITFQIVPMDLGNGNFKLQIETSQD 641 Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIV--GPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + VL ++ + V + +L++ ++ + + + +++Y +IRF Sbjct: 642 LSNVLSKIESDVATFVSSGNKPRFIAYAISTSRAFDLLKYSMIAIAGAFLVVIVYTFIRF 701 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 KW +++ A+ L+ D+ ++ F + ++ + +AA+L++ +S+ND ++V++R+++ + Sbjct: 702 KWTYSIAAVFGLLHDVLMSIAFIVVARLQLSPIMIAALLSITAFSINDTIIVFERIKETI 761 Query: 749 KLYTTS-----ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 +++ + +I +T RS+YT++ +S+L + ++G + SF I M F Sbjct: 762 NTQYHGVFLSKALIKEIANNAIKDTFKRSLYTTLTTVVSILVLLMFGNATDLSFNIVMIF 821 Query: 804 GIVVAASSSIFIAAPILLFIYDWRA 828 G+VV + SSIFI + + + R Sbjct: 822 GLVVGSYSSIFICTWLWIKLETKRQ 846 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 77/205 (37%), Gaps = 4/205 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 I ++ + + R ++ + + +++ + + Sbjct: 311 NEAQAKKTAANINFGSANYDLKILSSNYIEASKTSNSFRSALLAGAVVFSIIAVFMIVNY 370 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 AL ++ L + TL F + E++ +AA++ IG SV+ ++ ++R++ + Sbjct: 371 GLLGALS-TISIALYMFLTLLLFTVLRGEYSPVTIAALIIGIGISVDSNIITFERLKNEV 429 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + + + TLG + ++ + + +G S I F+I + F + Sbjct: 430 YAGDR---LKKAMKNANHRTLGSILDANILTLLISFVLFFFGTSTIKGFSISLVFSVTFI 486 Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833 + + + + + A + ++ Sbjct: 487 LIVMLIFTRGLSVLLVNTGAFDKKL 511 >gi|262277203|ref|ZP_06054996.1| protein-export membrane protein SecF [alpha proteobacterium HIMB114] gi|262224306|gb|EEY74765.1| protein-export membrane protein SecF [alpha proteobacterium HIMB114] Length = 302 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 110/296 (37%), Positives = 177/296 (59%), Gaps = 4/296 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 I F++ +S L + S F++GLN GIDFKGG + + ++ Sbjct: 1 MFNIYNKNISFLKFYKQFYLLSFLLIVISFISFFSNGLNLGIDFKGGTVIEMQFDKKYSA 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + +R L ++GD+ + F + FL + + G S V ++K +TE + Sbjct: 61 TNIREALIQQELGDVKVKEFGNSQTFLAIFEKKSGKSDFIPNVKTQLEKSLTETINF--- 117 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + E+VGPKIS+EL + GI V+I+ I ML YIW+RF+W F+LG+I L+ D+ TLG F Sbjct: 118 RRVEMVGPKISKELTKSGIYAVLIALILMLFYIWLRFEWQFSLGSILALLHDVILTLGAF 177 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 ++ G EFNL+ +AA+LT++GYS+ND VV+YDR+R+N+K S DLI+ S+NETL R Sbjct: 178 SIIGFEFNLSIIAAILTIVGYSMNDTVVIYDRIRENLKKDDKS-DLLDLINISVNETLPR 236 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ TS+ ++++ + +GG ++ F+ + +G++V SSIFIAAP++L R Sbjct: 237 TLKTSITTLLALIAIYFFGGEILRGFSFALIWGVIVGTYSSIFIAAPLILIFNVKR 292 >gi|259418712|ref|ZP_05742629.1| protein-export membrane protein SecD [Silicibacter sp. TrichCH4B] gi|259344934|gb|EEW56788.1| protein-export membrane protein SecD [Silicibacter sp. TrichCH4B] Length = 554 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 205/548 (37%), Positives = 302/548 (55%), Gaps = 32/548 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43 W +L ++C GLL ALPN ++ +++P MP Sbjct: 7 WKRVLIWLVCVAGLLAALPNAFYTRVEQSNDAWAQIEVEGETPERLTVAEQWPEWMPSGL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI----QNKIT 99 ++LGLDLRGG+HL+ EV D + E+R+ L+ E + + R+I ++I Sbjct: 67 VNLGLDLRGGAHLLAEVQVSDVYTARMDALWPEVRNVLRDERGTIGTFRRIPEAPADQIR 126 Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159 L +D+ + V V S + I+I LS Sbjct: 127 LRLSDAAGMSRALELVRGLANPVTSLTGAGATDITVS-GQGDVITIALSDEEKLASDDRT 185 Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219 + QS+EIIR+RID++G E TIQR GS RILIQ+PG + L++++GTTA+++F+ V+ Sbjct: 186 VRQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKEIIGTTAQLTFNPVVS 245 Query: 220 NNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 S G+ D G Y VE ++G L A FD +P V+ F+ Sbjct: 246 RGSDADASAGIGNKVIPSIDEPGTYYTVESAPVVTGEELVDAQPAFDQNG-QPAVNFRFN 304 Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335 GAR+F + T NIG P A+VLD V++APVI IP G I+GNF++E + LA +L Sbjct: 305 TAGARKFGDYTAQNIGAPFAIVLDDEVISAPVIRSHIPGGSGIITGNFSVEDSTQLAVLL 364 Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395 RAG+LP +L +EER +G +LG DSI G A V +++FM++ YG +G A+ ++ Sbjct: 365 RAGALPAELQFLEERTIGPELGQDSIDAGKVATVVAFAAVLVFMVLSYGLFGFFANIALI 424 Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455 LN+ L LSL+G TLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++D G Sbjct: 425 LNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEG 484 Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 +++A S I D+NIT I V+LF G G VRGFAIT+GL IL S+FTAI + R +++ Sbjct: 485 YAKALSAIVDANITTFITAVILFAIGSGPVRGFAITLGLGILTSVFTAIFVTRLIIVMWF 544 Query: 516 RYKKMKSI 523 ++ K+I Sbjct: 545 ERRRPKTI 552 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 3/140 (2%) Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 F A LIL+I G +L G L +A ++ +G +V+ V++++R+R+ +K Sbjct: 414 LFGFFANIALILNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKA 473 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 ID+ + L V ++ FI+ + + G + FAI + GI+ + Sbjct: 474 ---GRGPARAIDEGYAKALSAIVDANITTFITAVILFAIGSGPVRGFAITLGLGILTSVF 530 Query: 811 SSIFIAAPILLFIYDWRAKN 830 ++IF+ I++ ++ R Sbjct: 531 TAIFVTRLIIVMWFERRRPK 550 >gi|258404973|ref|YP_003197715.1| preprotein translocase subunit SecD [Desulfohalobium retbaense DSM 5692] gi|257797200|gb|ACV68137.1| protein-export membrane protein SecD [Desulfohalobium retbaense DSM 5692] Length = 533 Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 182/536 (33%), Positives = 297/536 (55%), Gaps = 25/536 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + W ++L ++ +GL ALP+ LP +P ++LGLDL+GG HL L V Sbjct: 1 MSSLRWRIVLAVIVLGLGLAYALPSVLPSG--SGIQKMLPDKEVNLGLDLKGGMHLTLGV 58 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 D + + L ++R+ ++E + + + N + A E + + Sbjct: 59 DLETAIQNALSQTGQDIRAEAREESILVLRPEVDKAGN-LQFWLAKQEQSETLQALLEDR 117 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 V + + ++ ++ + + ++Q+++ IR R+DQ G++E Sbjct: 118 FPNV------SIQGVETLDNGRQKYTVGYRPKYREHLEEMTLDQALKTIRNRVDQFGVAE 171 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 I++ +RI +QLPG +DP R +++G TA + F V + + G+ Sbjct: 172 PDIRKQQGNRIQVQLPGLEDPERAIKIIGQTAHLEFKLVDEDADAQKAERGIVPPGSELA 231 Query: 239 -------------NQYLVEDKVEISGIHLNGATANFDPK-THKPVVDISFDEMGARRFFE 284 ++E ++G ++ A+ FD ++P V +SF++ G+R F Sbjct: 232 YLQRKMPDGSYKKQPIVLEKNALLTGEYITDASTQFDTSGFNQPYVALSFNQRGSRLFER 291 Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344 +T +++G LA+VLDG+V +AP I + I G+A I+G FT E A LA +LRAGSLP + Sbjct: 292 ITAEHVGDRLAIVLDGKVYSAPRIQERISGGRASITGGFTTEEAHDLALVLRAGSLPAPV 351 Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404 ++++ER+VG LG SI +G +IV G L++LFM++ YG G+VAD + LN++L LA Sbjct: 352 DVLQERSVGPSLGQQSIDQGIMSIVVGGALVLLFMVIYYGIGGIVADTVLALNILLILAG 411 Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464 L+ GATLTLP IAGI+L IG+AVD+N+L+ ERIREE R+ ++D GF+RA TI Sbjct: 412 LAGFGATLTLPGIAGIILTIGMAVDANVLIFERIREELRRGLGPRKAVDEGFARATLTIL 471 Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 D+N+T +IA ++L+ FG G +RGFA+T+ L I+ SMFTAI + R M + K+ Sbjct: 472 DANVTTIIAAIILYQFGTGPIRGFAVTLSLGIVASMFTAIFVARIMFDLWLSRKQP 527 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 83/181 (45%), Gaps = 4/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 VGP + ++ I +GI+ +++ +L+++ I + + + + G A Sbjct: 355 QERSVGPSLGQQSIDQGIMSIVVGGALVLLFMVIYYGIGGIVADTVLALNILLILAGL-A 413 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 FG L +A ++ IG +V+ V++++R+R+ ++ + R +D+ Sbjct: 414 GFGATLTLPGIAGIILTIGMAVDANVLIFERIREELR---RGLGPRKAVDEGFARATLTI 470 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + ++ I+ + + +G I FA+ ++ GIV + ++IF+A + + + Sbjct: 471 LDANVTTIIAAIILYQFGTGPIRGFAVTLSLGIVASMFTAIFVARIMFDLWLSRKQPASS 530 Query: 833 I 833 + Sbjct: 531 L 531 >gi|197118810|ref|YP_002139237.1| preprotein translocase subunit SecD [Geobacter bemidjiensis Bem] gi|197088170|gb|ACH39441.1| protein export membrane protein SecD [Geobacter bemidjiensis Bem] Length = 532 Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 187/540 (34%), Positives = 286/540 (52%), Gaps = 23/540 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ W + L + + P + + +PK++I LGLDL+GG+HLV+ V Sbjct: 1 MKGYTWRISLILVFIIASFVYLTPTLVDTLP-SWWSGLLPKDKIHLGLDLQGGTHLVMGV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119 + + V G L + + +L L ++ + S+ R +K+ L+ D + + Sbjct: 60 ETEKAVEGSLDLIATDLEDSLTQQNLRYKSIARVGNDKVQLTLYDRSSADTAQALIKKKY 119 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 + + +++ A+ Q++E IR RIDQ G+SE Sbjct: 120 -------PDMQTLPATDEGGFIGMQVRINEKEAQVRKDRAVAQALETIRNRIDQFGVSEP 172 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS--- 236 IQR G I++QLPG +DP R L+G TA++ F V + D Sbjct: 173 VIQREGLTNIVVQLPGIKDPKRAIDLIGKTARLEFKLVDETINAATATASGLPADDELLY 232 Query: 237 -----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 +V+ K I+G L A D + ++P V I F+ GAR F +V Sbjct: 233 EKKTDATTGAVSETPIVVKRKAIITGDLLTDAQIRIDSQYNQPYVAIDFNSTGARLFDQV 292 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 T N+GK A+VLD V +APVI + I G AQISG+FT + A LA +LRAGSLP + Sbjct: 293 TAANVGKRFAIVLDNNVYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVK 352 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 I++ VG LG DSI+KG A + G++L+V FM + Y G+VA+F + LN++ + L Sbjct: 353 ILQNVTVGPSLGKDSIHKGLMAGLIGVLLVVGFMAIYYKICGMVANFGMVLNILFLMGAL 412 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 S LGATLTLP IA IVL +G++VDSN+L+ ERIREE R ++ +LD G+ +A+ TI D Sbjct: 413 SALGATLTLPGIAAIVLLVGMSVDSNVLIFERIREELRLGKTPHAALDSGYDKAFLTIMD 472 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 S++TALI VLF FG G V+GFA+++ L I+I++FT++ + + + +K + I Sbjct: 473 SHVTALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLVSTKVIFDAYLERAHVKRLSI 532 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 92/181 (50%), Gaps = 5/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 VGP + ++ I KG++ +I + ++ ++ I +K + A ++L+I +G + Sbjct: 355 QNVTVGPSLGKDSIHKGLMAGLIGVLLVVGFMAIYYKIC-GMVANFGMVLNILFLMGALS 413 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G L +AA++ L+G SV+ V++++R+R+ ++L + +D ++ Sbjct: 414 ALGATLTLPGIAAIVLLVGMSVDSNVLIFERIREELRL---GKTPHAALDSGYDKAFLTI 470 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + + A I+ + +G + FA+ ++ GI++ +S+ ++ ++ Y RA R Sbjct: 471 MDSHVTALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSL-VSTKVIFDAYLERAHVKR 529 Query: 833 I 833 + Sbjct: 530 L 530 >gi|293363763|ref|ZP_06610505.1| putative protein-export membrane protein SecF [Mycoplasma alligatoris A21JP2] gi|292552684|gb|EFF41452.1| putative protein-export membrane protein SecF [Mycoplasma alligatoris A21JP2] Length = 851 Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 162/862 (18%), Positives = 342/862 (39%), Gaps = 74/862 (8%) Query: 7 LVILYSMI-CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV--DED 63 +++ ++I + ++ ++ ++ P I G GG ++++V D Sbjct: 2 VILSITLISTLLAIVFGSVFYVGKN---------PNRSIEYG----GGIEVLVQVKKDNQ 48 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + S+ L L + KI +S + + + Sbjct: 49 NADKELTNKVSESLFERLTGGTGLTGTSVSSEGDGKIRIS-KSGNLTDAQRSEFESKV-- 105 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 K +L T + + + + I + + Sbjct: 106 --------ADKPILTMTDIDVKPLFKNGEFDRNGS-----LQIGSSKNWIPPFADNGAKY 152 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + + + + + + L T + K + + D + Sbjct: 153 LVDHTGKDSVSIDLKDNDAILEWTKAT----EYISTRQEPGKNVILMWINIEELLDLAKN 208 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + E SG +L + + + ++ N+ K Sbjct: 209 KFPREWEASGRNLYNFVHVNNKAVEEVPDPTPQNPDNKKQIR-----NVLKQAEFNAKDY 263 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +++ + QA+ + I+GNFT A LA + G L+I+ V +DL S + Sbjct: 264 LISEAGVFQALNTKSVLINGNFTQTEAKELANDINYGISKYDLSILSSVYVDSDLNSSAF 323 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 A + LI +FM++ YG G ++ SI L + LTL + ++L + +IA ++ Sbjct: 324 NSAMLAGLIVFSLISIFMMINYGLLGALSTISIALYIFLTLLMFTVLRGEYSPATIAALI 383 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 +GIG++VD+NI+ ER++++ S+ S S ++STI D+N+T LI LF+FG Sbjct: 384 IGIGISVDANIITFERLKKDIYHGSSLKKSYKNSNSLSFSTIIDANVTTLIVAFTLFYFG 443 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMI------FIIRYKKMKSIDINPLSRFFLIP 535 VRGF+I++ LSIL ++ + R ++ + I ++R Sbjct: 444 TKDVRGFSISLILSILFTLIVMLIFTRFTSSMIVNTGWMENKLWLLGIHKKYINRDNSNK 503 Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLF---------THGLNYGIDFKGGIQLGVLAN 586 +++ W +S+L I + + G+ I+FKGG+ + V + Sbjct: 504 FYAKFDYVKQAKWFALVSLLLLIAAGIVFISIGTTSSSIWDGIVRNIEFKGGLNITVTGD 563 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-- 644 + +++ E ++ + + N + Q D+ + L ++ + Sbjct: 564 KSKFVNLSFDEAEKIKNYILENASIWNIHNPEEVINIQRVDNNSDNWALILLSTQDLSEN 623 Query: 645 ---------IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 + + + L+ + + I+ I +++Y +R KW +++ Sbjct: 624 ITQITSGISNNFNNLTITNYNISTTEANRLLLNSLFAISIAFIGIVLYTLVRMKWTYSIA 683 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-- 753 AI L+ D+ + F + ++ + +AA+L++IG+S+ND +V +DR+R+ M Sbjct: 684 AIIGLLHDMLVVVAFIVITRLQMSSIMIAALLSIIGFSINDTIVTFDRIREIMSTMKHDQ 743 Query: 754 ---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 R + +++I+ET+ RS YT++ +++ + +G + SF I M FG+V+ Sbjct: 744 VIEKNQIRKIANQAISETIKRSFYTTLTTISALIILLAFGNATDFSFNIVMLFGMVIGVY 803 Query: 811 SSIFIAAPILLFIYDWRAKNAR 832 SSIFI + + + ++R K + Sbjct: 804 SSIFICTRVWVALENFRQKGIK 825 >gi|260773395|ref|ZP_05882311.1| protein-export membrane protein SecF [Vibrio metschnikovii CIP 69.14] gi|260612534|gb|EEX37737.1| protein-export membrane protein SecF [Vibrio metschnikovii CIP 69.14] Length = 315 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 163/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + ++ I FMR + +S+L SI L T LN+G+DF GG + V P Sbjct: 1 MYQILKAEKTIDFMRWSKFTFVLSLLMIGASIFTLSTKWLNWGLDFTGGTLIEVGFAEPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R L+ GD + QNF ++ +VRL+ + G +T +++ Sbjct: 61 NLEKIRHALDERGFGDATVQNFGSARDVMVRLRPREG-VAGETLGNQILNAIKEGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + ++ S I +L+Y+ +RF+W A GA+ +L D+ TLG Sbjct: 120 DMRRIEFVGPNVGDELAEAGGLAILASLICILLYVSMRFEWRLASGAVLSLAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L IE +LT VAA+LT++GYS+ND +VV+DR+R+N + S ++++ SI +TL Sbjct: 180 IFSLLQIEIDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKLRKGDS-AEVMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + V GG+ I FA + GI V SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFVQGGANIHGFATALLLGITVGTYSSIYVASALALKLGITRE 297 >gi|189425068|ref|YP_001952245.1| preprotein translocase subunit SecD [Geobacter lovleyi SZ] gi|189421327|gb|ACD95725.1| protein-export membrane protein SecD [Geobacter lovleyi SZ] Length = 530 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 187/532 (35%), Positives = 285/532 (53%), Gaps = 20/532 (3%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65 W + L + + + +P P+ D + +PK++I LGLDL+GG+HLVLEV+ Sbjct: 7 WRIALIAAFIVLSCIYLVPTLNPKLP-DWWKGMLPKDKIHLGLDLQGGTHLVLEVETAKA 65 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD-KVTLFLQGVNS 124 V G L + + +L L + + + + + + V + Sbjct: 66 VEGTLDLVATDLEDTLNSKNLRFKRISRTGSDKVAIVMYEKDTAAAVQKLVKEKYRDYEM 125 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 + I++ + + +I A+ Q++E IR RIDQ G+SE I R Sbjct: 126 I-------PTVEEGGMVGIALRMKEQDIQDRKDKAVAQALETIRNRIDQFGVSEPVIARQ 178 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-----------VRFL 233 G ++I++QLPG +DP R L+G TA++ F V S G Sbjct: 179 GINQIVVQLPGIKDPQRAIALIGRTARLEFKMVKEGVSPTGGAVPEDSEVLFEKHTDPVT 238 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 + +V K I+G L A D + ++P V I F+ +GAR F +VT N+GK Sbjct: 239 GATTETPLVVYKKALITGDLLTDAQVRIDSQFNQPYVGIEFNSLGARLFDQVTAANVGKR 298 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 A+VLD V +APVI + I G AQISGNFT +TA LA +LRAG+LP + I++ VG Sbjct: 299 FAIVLDSNVYSAPVIRERISGGSAQISGNFTEKTASDLAIVLRAGALPAPVKIIQNVTVG 358 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 A LG DSI KG A G+ L++ FM V Y G+VA+ + LN++ + +S LGATLT Sbjct: 359 ASLGKDSIDKGLMAGAIGVALVIGFMAVYYKLSGMVANLGMVLNILYLMGAMSALGATLT 418 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IA IVL +G++VDSN+++ ERIREE R +S +L+ G+ +A+ TI DS++TALI Sbjct: 419 LPGIAAIVLLVGMSVDSNVIIFERIREELRLGKSPKSALEAGYDKAFLTIMDSHVTALIT 478 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 VLF FG G V+GFA+++ L I+I++FT++ + + + +K + I Sbjct: 479 AAVLFQFGTGPVKGFAVSLSLGIMINLFTSLMGTKVIFDLFLHKGNVKKMSI 530 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 VG + ++ I KG++ I ++ ++ + +K + A ++L+I +G + Sbjct: 353 QNVTVGASLGKDSIDKGLMAGAIGVALVIGFMAVYYKLS-GMVANLGMVLNILYLMGAMS 411 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G L +AA++ L+G SV+ V++++R+R+ ++L S + ++ ++ Sbjct: 412 ALGATLTLPGIAAIVLLVGMSVDSNVIIFERIREELRL---GKSPKSALEAGYDKAFLTI 468 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 + + + A I+ + +G + FA+ ++ GI++ +S+ Sbjct: 469 MDSHVTALITAAVLFQFGTGPVKGFAVSLSLGIMINLFTSL 509 >gi|156973362|ref|YP_001444269.1| preprotein translocase subunit SecF [Vibrio harveyi ATCC BAA-1116] gi|156524956|gb|ABU70042.1| hypothetical protein VIBHAR_01049 [Vibrio harveyi ATCC BAA-1116] Length = 315 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 162/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SI SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAEGTIGFMRWSKVAFVFSICMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ L+S GD + QNF ++ +VRL+ + D +T +++ Sbjct: 61 NLQEIRAALDSKGFGDATVQNFGSARDVMVRLRPRD-DMSGETLGNQIIGAIKEGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L DI TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSMRFEWRLAAGAVMALAHDIIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D++D SI +TL Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + + GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297 >gi|260771412|ref|ZP_05880337.1| protein-export membrane protein SecF [Vibrio furnissii CIP 102972] gi|260613538|gb|EEX38732.1| protein-export membrane protein SecF [Vibrio furnissii CIP 102972] gi|315180993|gb|ADT87907.1| preprotein translocase subunit SecF [Vibrio furnissii NCTC 11218] Length = 315 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 165/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR +S+L SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAEKTIDFMRWSKVTFMLSLLMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +RS+LE+ GD + QNF + +VRL+ + D Q ++++ Sbjct: 61 NLEEIRSSLEAKGFGDATVQNFGSAREVMVRLRPRD-DMAGQVLGNQILEAIKDGTGKAV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +I S I +LIY+ +RF+W A GA+ +L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAIIASLICILIYVSVRFEWRLAAGAVMSLAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L IE +LT VAA+LT++GYS+ND +VV+DR+R+N + S ++I+ SI +TL Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKLRKGEST-EIINSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + V GG+ I FA + GI V SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFVQGGANIHGFATALLLGITVGTYSSIYVASALALKLGITRE 297 >gi|28897365|ref|NP_796970.1| preprotein translocase subunit SecF [Vibrio parahaemolyticus RIMD 2210633] gi|153838079|ref|ZP_01990746.1| protein-export membrane protein SecF [Vibrio parahaemolyticus AQ3810] gi|260364490|ref|ZP_05777111.1| protein-export membrane protein SecF [Vibrio parahaemolyticus K5030] gi|260876326|ref|ZP_05888681.1| protein-export membrane protein SecF [Vibrio parahaemolyticus AN-5034] gi|260898597|ref|ZP_05907093.1| protein-export membrane protein SecF [Vibrio parahaemolyticus Peru-466] gi|260899303|ref|ZP_05907698.1| protein-export membrane protein SecF [Vibrio parahaemolyticus AQ4037] gi|28805577|dbj|BAC58854.1| protein-export membrane protein SecF [Vibrio parahaemolyticus RIMD 2210633] gi|149748546|gb|EDM59405.1| protein-export membrane protein SecF [Vibrio parahaemolyticus AQ3810] gi|308086933|gb|EFO36628.1| protein-export membrane protein SecF [Vibrio parahaemolyticus Peru-466] gi|308092919|gb|EFO42614.1| protein-export membrane protein SecF [Vibrio parahaemolyticus AN-5034] gi|308106636|gb|EFO44176.1| protein-export membrane protein SecF [Vibrio parahaemolyticus AQ4037] gi|308114700|gb|EFO52240.1| protein-export membrane protein SecF [Vibrio parahaemolyticus K5030] gi|328472611|gb|EGF43474.1| preprotein translocase subunit SecF [Vibrio parahaemolyticus 10329] Length = 315 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 163/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ +I FMR SI SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAEKSIGFMRWSKVAFVFSIFMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEKPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ L++ GD + QNF ++ +VRL+ + D +T +++ Sbjct: 61 NLEEIRTALDAKGFGDATVQNFGSARDVMVRLRPRD-DVSGETLGNQIIGAIKEGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L DI TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSMRFEWRLAAGAVMALAHDIIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D++D SI +TL Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKG-DPADIMDASITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + V GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297 >gi|85860049|ref|YP_462251.1| protein translocase subunit [Syntrophus aciditrophicus SB] gi|85723140|gb|ABC78083.1| protein translocase subunit [Syntrophus aciditrophicus SB] Length = 533 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 195/536 (36%), Positives = 298/536 (55%), Gaps = 23/536 (4%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 + + + + P + + +PK+RI LGLDL+GG HLVLEVD D Sbjct: 6 RVRAFIALAVILVAVFYLFPTLTADLP-EFWKKNLPKDRIHLGLDLQGGMHLVLEVDADK 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVN 123 + L+ + +L+ L + I + + ++ IT+ DS + + Sbjct: 65 AIEATLERTAVDLKETLMDKRIRFKRLERSTSQNITVELPDSASRSAFDKSLKDSY---- 120 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + +S+ +S+ D++ AIEQS+E IR R+DQ GI+E I Sbjct: 121 ---PDLEVVSSETVEGIERVSLGVSERRKDEIRKLAIEQSLETIRNRVDQFGITEPEIVP 177 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237 G RILIQLPG +DP R + L+G TA + F V +S + G + Sbjct: 178 QGKDRILIQLPGIKDPGRAKNLIGKTALLEFKLVDEGHSIDEALKGNVPEGSAITYGWNV 237 Query: 238 --------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 YL++ K ++G L A + +P V ++F+ GA F +T +N Sbjct: 238 DSQSGRRTEVPYLLKSKTLLTGDALENAQVKISDRFGEPHVALTFNSRGAADFERITGEN 297 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + K LA+VLDG V +APVI + I G+AQI+G+FT+E A LA +LRAG+LP + I+EE Sbjct: 298 VKKRLAIVLDGVVHSAPVIQEKISGGQAQITGSFTMEEARDLAIVLRAGALPAPVKILEE 357 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R VG LG DSI G A V +L+VLFM+ Y G+VAD ++ LN++L + ++ Sbjct: 358 RTVGPSLGQDSIEMGIWACVIAGILVVLFMVFYYRLSGMVADVALVLNLVLLMGAMAAFK 417 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 ATLTLP IAGIVL IG+AVD+N+L+ ERIREE R ++ +++ G+S+A+ TI DSN+T Sbjct: 418 ATLTLPGIAGIVLTIGMAVDANVLIFERIREELRTEKTPRAAVEAGYSKAFLTILDSNVT 477 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 L+A + LF FG G ++GFA+T+ + I++SMFTAI + R + + + +++KSI I Sbjct: 478 TLVAALFLFGFGTGPIKGFAVTLTIGIVVSMFTAIFVTRIIFDYFVWNRRIKSISI 533 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 90/173 (52%), Gaps = 5/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I GI +I+ I +++++ ++ + A L+L++ +G A F Sbjct: 361 GPSLGQDSIEMGIWACVIAGILVVLFMVFYYRLS-GMVADVALVLNLVLLMGAMAAFKAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++++R+R+ ++ T + R ++ ++ + +++ Sbjct: 420 LTLPGIAGIVLTIGMAVDANVLIFERIREELR---TEKTPRAAVEAGYSKAFLTILDSNV 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAK 829 ++ L + +G I FA+ + GIVV+ ++IF+ I F+++ R K Sbjct: 477 TTLVAALFLFGFGTGPIKGFAVTLTIGIVVSMFTAIFVTRIIFDYFVWNRRIK 529 >gi|77165813|ref|YP_344338.1| preprotein translocase subunit SecD [Nitrosococcus oceani ATCC 19707] gi|254433081|ref|ZP_05046589.1| protein-export membrane protein SecD [Nitrosococcus oceani AFC27] gi|76884127|gb|ABA58808.1| SecD export membrane protein [Nitrosococcus oceani ATCC 19707] gi|207089414|gb|EDZ66685.1| protein-export membrane protein SecD [Nitrosococcus oceani AFC27] Length = 618 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 179/521 (34%), Positives = 285/521 (54%), Gaps = 36/521 (6%) Query: 33 DRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89 P + ++LGLDLRGG H ++EVD + V + Y ++LRS L++ I Sbjct: 106 PATPDWLRAIGGLPMNLGLDLRGGVHFLMEVDMEAAVQQAEERYVEDLRSLLRENKIRYL 165 Query: 90 SM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148 S+ R + + F + + +E + + + + + I LS Sbjct: 166 SIGRLGAGGVEIKFRNEQQREQAETLIHDEYFDLLLEPAEGERAP--------RLEIKLS 217 Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + ++ A++Q++ +R RI+++G++E TIQ+ G +RI++QLPG QD +R +++LG Sbjct: 218 EKEQREIQRLALQQNITTLRNRINELGVAEPTIQQQGENRIVVQLPGVQDTARAKEILGA 277 Query: 209 TAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 TA + F V + G R + G L++ +V ++G H+ A++ + Sbjct: 278 TATLEFRLVDTSHDVQRAVEGRVPVGSRLYHERGGAPILLKKRVILTGDHVTDASSGIEQ 337 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLT 304 + P V +S D GAR F +VT +NIGKP+ V + Sbjct: 338 QGGSPAVFVSLDGQGARHFSQVTGENIGKPMAVVFIETKSEIRMEEGEPVKVRRRVPEVI 397 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + S + QI+G + E A LA +LRAG+L ++IVEER +G LG D+I KG Sbjct: 398 NVATIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIVEERTIGPSLGQDNIDKG 457 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 +++ G L+++FM + Y +GLVA+ ++ N++L ++LLS+L ATLTLP IAGIVL + Sbjct: 458 FQSVLIGFALVLVFMALYYRVFGLVANLALAANLVLVVSLLSMLQATLTLPGIAGIVLTV 517 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ ERIREE R S S++ G++ A STI D+NIT LI VVLF FG G Sbjct: 518 GMAVDANVLIFERIREELRNGSSPQASIEAGYANALSTIVDANITTLITAVVLFGFGTGP 577 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 ++GFA+T+ L IL SMFTAI RA++ I ++ + I Sbjct: 578 IKGFAVTLSLGILTSMFTAIVGTRAVINLIYGRRRKVKLSI 618 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 105/279 (37%), Gaps = 4/279 (1%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 S + H + G V ++ + ++ N Sbjct: 341 SPAVFVSLDGQGARHFSQVTGENIGKPMAVVFIETKSEIRMEEGEPVKVRRRVPEVINVA 400 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 ++ L + G + + + + I +GP + ++ I KG Sbjct: 401 TIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIVEERTIGPSLGQDNIDKGFQS 460 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 V+I +L+++ + ++ F L A L ++ + ++ L +A ++ +G Sbjct: 461 VLIGFALVLVFMALYYRV-FGLVANLALAANLVLVVSLLSMLQATLTLPGIAGIVLTVGM 519 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 +V+ V++++R+R+ ++ S + I+ L V ++ I+ + + +G Sbjct: 520 AVDANVLIFERIREELR---NGSSPQASIEAGYANALSTIVDANITTLITAVVLFGFGTG 576 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I FA+ ++ GI+ + ++I ++ IY R K Sbjct: 577 PIKGFAVTLSLGILTSMFTAIVGTRAVINLIYGRRRKVK 615 >gi|197105417|ref|YP_002130794.1| protein-export membrane protein SecD [Phenylobacterium zucineum HLK1] gi|196478837|gb|ACG78365.1| protein-export membrane protein SecD [Phenylobacterium zucineum HLK1] Length = 534 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 193/530 (36%), Positives = 309/530 (58%), Gaps = 9/530 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W V+L + +G L+A PN +P P +PK ++LGLDL+GGS+L+LEVD + Sbjct: 5 SRWKVLLVVLSVVLGALLAFPNVVPPETRASLPGFVPKQTLNLGLDLQGGSYLLLEVDTE 64 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 L +++R+ L++ I + + + + D + L Sbjct: 65 ALRAERLTNTVEDVRTQLREAQIPFTGLGVVNGAVAVRITDPAQVREAQTLLRNTLGAPL 124 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + V + + T ++ I + + + A+EQS+EIIR+R+D++G E TI R Sbjct: 125 AGT-VGGRDLTVSTEADQRIRVTFVPEAMQAESARAVEQSIEIIRRRVDELGTREPTIVR 183 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-------VRFLRDS 236 G++RI++Q PGE DP RL+ ++G TAK++F V G V D Sbjct: 184 QGTNRIVVQAPGESDPERLKNVIGQTAKLTFQMVDEAADLNEAAAGRVPPGSEVLPSDDG 243 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y+V+ + ++G L A+A F P+T +P+V+ FD GARRF + T NIGK A+ Sbjct: 244 AVPFYVVKRRAVVTGEMLTSASAAFHPQTGQPIVEFRFDGQGARRFGDATTQNIGKRFAI 303 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 VLD +V++AP IN AI G I GNFT E+A LA +LRAG+LP LN+ E+R V A+L Sbjct: 304 VLDKKVISAPRINSAITGGSGYIEGNFTTESANDLAVLLRAGALPAPLNVEEQRTVSAEL 363 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLP 415 G+D+I G + V V +V FM++ YG +G ++ ++ +N +L +A +SL ATLTLP Sbjct: 364 GADAIKAGQISTVVAFVSVVGFMLLAYGFLFGGISIIALLVNGLLIIAAMSLTQATLTLP 423 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAG++L + +AVD+N+L+ ER+R+E R ++ ++D GFSRA +TI D+N+T L+A + Sbjct: 424 GIAGLILTLAMAVDANVLIYERMRDEVRAGRTAIAAMDAGFSRAMTTIVDANLTTLLAAL 483 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 ++F FG G V+GFA T+ + ++ S+FTA+ I + ++ R + K++ I Sbjct: 484 LMFQFGAGPVKGFAWTLSIGVVTSVFTAVLITQVLLALWYRTTRPKTLPI 533 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 79/177 (44%), Gaps = 3/177 (1%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 V ++ + I+ G + +++ ++++ ++ + + + F +I L+++ + +L Sbjct: 356 QRTVSAELGADAIKAGQISTVVAFVSVVGFMLLAYGFLFGGISIIALLVNGLLIIAAMSL 415 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 L +A ++ + +V+ V++Y+RMR ++ + +D + + V Sbjct: 416 TQATLTLPGIAGLILTLAMAVDANVLIYERMRDEVRA---GRTAIAAMDAGFSRAMTTIV 472 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ ++ L M +G + FA ++ G+V + +++ I +L Y Sbjct: 473 DANLTTLLAALLMFQFGAGPVKGFAWTLSIGVVTSVFTAVLITQVLLALWYRTTRPK 529 >gi|253700407|ref|YP_003021596.1| preprotein translocase subunit SecD [Geobacter sp. M21] gi|251775257|gb|ACT17838.1| protein-export membrane protein SecD [Geobacter sp. M21] Length = 532 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 187/540 (34%), Positives = 283/540 (52%), Gaps = 23/540 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ W + L + + P + + +PK++I LGLDL+GG+HLV+ V Sbjct: 1 MKGYTWRISLILLFIIASFVYLTPTLVDTLP-SWWSGLLPKDKIHLGLDLQGGTHLVMGV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119 + + V G L + + +L L ++ + ++ R +K+ L+ D + + Sbjct: 60 ETEKAVEGSLDLIATDLEDSLTQQNLRYKNILRVGNDKVQLTLYDRVSADAAQALIKKKY 119 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 + I + + A+ Q++E IR RIDQ G+SE Sbjct: 120 -------PDMQILPATDEGGFIGMQIRIDEKEAQLRKDRAVAQALETIRNRIDQFGVSEP 172 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS--- 236 IQR G I++QLPG +DP R L+G TA++ F V + D Sbjct: 173 VIQREGLTNIVVQLPGIKDPKRAIDLIGKTARLEFKLVDETINAATATASSIPADDELLY 232 Query: 237 -----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 +V+ K I+G L A D + ++P V I F+ GAR F +V Sbjct: 233 EKNTDPATGAVSETPIVVKKKAIITGDLLTDAQIRIDSQYNQPYVAIDFNSTGARLFDQV 292 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 T N+GK A+VLD V +APVI + I G AQISG+FT + A LA +LRAGSLP + Sbjct: 293 TAANVGKRFAIVLDSNVYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVK 352 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 I++ VG LG DSI KG A + G+ L+V FM + Y G+VA+F + LN++ + L Sbjct: 353 ILQNVTVGPSLGKDSIRKGLMAGLIGVALVVSFMAIYYKLCGMVANFGMVLNILFLMGAL 412 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 S LGATLTLP IA IVL +G++VDSN+L+ ERIREE R ++ ++D G+ +A+ TI D Sbjct: 413 SALGATLTLPGIAAIVLLVGMSVDSNVLIFERIREELRLGKTPHAAVDSGYDKAFLTIMD 472 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 S++TALI VLF FG G V+GFA+++ L I+I++FT++ R + + +K + I Sbjct: 473 SHVTALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLVTTRVIFDAYLERANVKRLSI 532 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 84/169 (49%), Gaps = 4/169 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ IRKG++ +I ++ ++ I +K + A ++L+I +G + G Sbjct: 360 GPSLGKDSIRKGLMAGLIGVALVVSFMAIYYKLC-GMVANFGMVLNILFLMGALSALGAT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +AA++ L+G SV+ V++++R+R+ ++L + +D ++ + + + Sbjct: 419 LTLPGIAAIVLLVGMSVDSNVLIFERIREELRL---GKTPHAAVDSGYDKAFLTIMDSHV 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 A I+ + +G + FA+ ++ GI++ +S+ I + Sbjct: 476 TALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLVTTRVIFDAYLER 524 >gi|114328110|ref|YP_745267.1| preprotein translocase subunit SecD [Granulibacter bethesdensis CGDNIH1] gi|114316284|gb|ABI62344.1| protein translocase subunit secD [Granulibacter bethesdensis CGDNIH1] Length = 526 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 189/526 (35%), Positives = 307/526 (58%), Gaps = 10/526 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + ++C +G+L+ LPN + + +P + LGLDLRGGS+L++++D Sbjct: 5 SRLKTTTIYLVCLLGMLLCLPNLMARPAA-----WLPWRTVHLGLDLRGGSYLLMQIDMK 59 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFL-Q 120 V L+ SD R ++ I ++ N+I LS D + + Sbjct: 60 AVVRERLESLSDTARQAMRNAHIFYTGLKAEPDANRIVLSPRDPAQLNAAVAALGKAVEN 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 V++ + + L +I+++L + + + A++QS+EI+R+RIDQ G+ + Sbjct: 120 EVSANGVREVEVKALEGAQAGQIALILPEAALHDRATAAVQQSIEIVRRRIDQTGVVDPN 179 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL-PNNSKKGFMFGVRFLRDSDGN 239 I R G RI++QLPG DP R++ LLGTTAKM+FH V + + G Sbjct: 180 IARQGEDRIVVQLPGVDDPQRIKDLLGTTAKMTFHMVDASATPAAVPPDDIALPEEGTGQ 239 Query: 240 QYLVEDKVEISGIHLNGATA-NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 + +V+ + ++ G L A + V +F+ +GAR+ ++T + G+ A+VL Sbjct: 240 KLVVKRRADVDGADLTDARPVPNQQRAGAWSVSFTFNGVGARKVADITAAHQGERFAIVL 299 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 D R+++APVI IP G+ +I+GNFT +TA LA +LRAG+LP L++VEER+VG +LG+ Sbjct: 300 DNRIISAPVIQSVIPDGRGEITGNFTAKTAQDLAVLLRAGALPAPLSVVEERSVGPELGA 359 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 DSI G ++ AG VL++LFM + YG +G +A+ ++ +N+ + L LSLL ATLTLP +A Sbjct: 360 DSIRAGAYSLAAGFVLVILFMGLFYGLFGWMANLALLMNLFMLLGALSLLEATLTLPGMA 419 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GI+L +G+AVD+NIL+NERIREE + + +++ GF RA++T+ DSN+TAL+A V+LF Sbjct: 420 GILLTLGMAVDANILINERIREETKAGRPPVAAMEAGFKRAWATVLDSNMTALLAHVMLF 479 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 FG G VRGFA+T+ + I ++FT + R +M+ + + Sbjct: 480 VFGTGPVRGFAVTITVGIATTLFTNFMLARLLMVKWFARNRPAELP 525 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 77/174 (44%), Gaps = 4/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP++ + IR G + + +++++ + + F A L++++ LG +L Sbjct: 352 SVGPELGADSIRAGAYSLAAGFVLVILFMGLFYGL-FGWMANLALLMNLFMLLGALSLLE 410 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A +L +G +V+ +++ +R+R+ K ++ + + Sbjct: 411 ATLTLPGMAGILLTLGMAVDANILINERIREETKA---GRPPVAAMEAGFKRAWATVLDS 467 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +M A ++ + + V+G + FA+ + GI ++ +A +++ + Sbjct: 468 NMTALLAHVMLFVFGTGPVRGFAVTITVGIATTLFTNFMLARLLMVKWFARNRP 521 >gi|300022794|ref|YP_003755405.1| protein-export membrane protein SecD [Hyphomicrobium denitrificans ATCC 51888] gi|299524615|gb|ADJ23084.1| protein-export membrane protein SecD [Hyphomicrobium denitrificans ATCC 51888] Length = 540 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 201/521 (38%), Positives = 319/521 (61%), Gaps = 11/521 (2%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W +I + C GLL+ALPNF P+ + +PS MPK +++LGLDL+GG+HL+L +D+D+ Sbjct: 6 RWKIIATLLTCLAGLLVALPNFFPKETVQSWPSFMPKQQLTLGLDLQGGAHLLLAMDQDE 65 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVN 123 ++ DE R L+ IG + ++ + A + + Q + Sbjct: 66 IKKDWINNLRDEARKELRDAKIGFTGIGTQGLTQLVVKLAKPEEQAAALKALNKVRQPIG 125 Query: 124 SKLNVDPKKNLLVTTTEKEISIVL--SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L ++ V++ + +IV+ S + Q +++A S+E I +R++ +G SESTI Sbjct: 126 NALLGAGAYDVEVSSGTEPGTIVIKESDQGLRQRVANAASASIETINRRVNNLGTSESTI 185 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDS 236 R G+ RILIQ PG +D + L++L+G TAK++FH+V P+ S G + Sbjct: 186 VRQGADRILIQFPGLKDTTDLKKLIGETAKLTFHEVHPSMSGDEAKMTKVPTGFKIYPGD 245 Query: 237 DGNQ---YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 G YL+ ++ + G L A FD + +PV++ F+++GAR+F T+D++G+P Sbjct: 246 KGESSGEYLLREQPVVQGADLADAQPGFDSRNGEPVINFRFNQIGARKFANFTKDHVGRP 305 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 A+VLD +VL+APVI + I G QISG+FT+E LA LR+GSLP KL IVEER VG Sbjct: 306 FAIVLDDKVLSAPVIREPILGGSGQISGSFTVEGTNTLAVQLRSGSLPTKLTIVEERTVG 365 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 LG+DSI G A V G + +V+ I+ YG +G+ A + +++ILT+AL++++GA LT Sbjct: 366 PSLGADSISAGKLAGVVGGIAVVILTILYYGTFGIFACVGLLVHLILTVALMTMIGAVLT 425 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAG+VLG+ +AVD+N+L+ ERIREE R + ++D GF RAY TI DS +T L Sbjct: 426 LPGIAGLVLGVAMAVDANVLIYERIREELRLGKMPVSAIDAGFQRAYVTILDSQLTTLAC 485 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 +++F+ G G +RGFA+T+ + IL S+F ++++VR ++ + Sbjct: 486 AIIMFWLGSGPIRGFAVTLTIGILTSIFASVTVVRLLISYW 526 Score = 127 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 74/172 (43%), Gaps = 4/172 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I G + ++ IA++I + + F + A L++ + T+ + G Sbjct: 365 GPSLGADSISAGKLAGVVGGIAVVILTILYYG-TFGIFACVGLLVHLILTVALMTMIGAV 423 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ + +V+ V++Y+R+R+ ++L ID + + + Sbjct: 424 LTLPGIAGLVLGVAMAVDANVLIYERIREELRL---GKMPVSAIDAGFQRAYVTILDSQL 480 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + M G I FA+ + GI+ + +S+ + ++ + + K Sbjct: 481 TTLACAIIMFWLGSGPIRGFAVTLTIGILTSIFASVTVVRLLISYWLRAQPK 532 >gi|325295267|ref|YP_004281781.1| protein-export membrane protein SecF [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065715|gb|ADY73722.1| protein-export membrane protein SecF [Desulfurobacterium thermolithotrophum DSM 11699] Length = 294 Score = 234 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 158/297 (53%), Gaps = 4/297 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICL-LFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 F+ R+ +S L S F G +GIDF GG + V + Sbjct: 1 MERKFDFIGKRYIAYFLSFLLIAGSWFYGAFIKGAKFGIDFTGGALVQVKIEDKNVNTET 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 L ++ ++ QN + FL++ + + V + +K+K + I+ Sbjct: 61 LRQLFKGKVEGVTVQNIETANEFLIKAPVKGDPNKTVESVTKTIKEKF---NGKAEIRRV 117 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 E++GP + +EL KGI+ +I + I +L+Y+ RF+ FA GA+ L D T G F Sbjct: 118 EMIGPTVGKELREKGIMALIYAMIGILLYVAWRFEAIFAFGAVLALFHDTLATTGIFMAV 177 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G EF+L +AA+LT+IGYS+ND +VVYDR+R+NMK+ S F +++++SIN+TL R++ Sbjct: 178 GREFSLPVIAALLTVIGYSINDTIVVYDRIRENMKVLLRSKPFEEIVNESINQTLSRTII 237 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 TS+ F VL + ++GG VI FA + GI+V SSIFIA+ I++ Y K Sbjct: 238 TSLTTFFVVLCLYIFGGGVINDFAFVLLVGIIVGTYSSIFIASAIVVDWYKRVKKVK 294 >gi|163736765|ref|ZP_02144184.1| protein-export membrane protein SecD [Phaeobacter gallaeciensis BS107] gi|161390635|gb|EDQ14985.1| protein-export membrane protein SecD [Phaeobacter gallaeciensis BS107] Length = 553 Score = 234 bits (595), Expect = 7e-59, Method: Composition-based stats. Identities = 207/547 (37%), Positives = 303/547 (55%), Gaps = 31/547 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43 W +L ++C GLL+ALPN + ++PS MP + Sbjct: 7 WKRVLIWLVCVTGLLLALPNAFYTRVEQANDAAAEIITKGESPARLDVAGQWPSFMPSSL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100 ++LGLDLRGG+HL+ EV D + E+R L+ E V + R+ Q +I L Sbjct: 67 VNLGLDLRGGAHLLAEVKVADVYGARMDALWPEVRDALRPERGEVGTFRRQQAPEGQIRL 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + V + S + T +++ LS+ + Sbjct: 127 KISKPEGMARALAVVRGLANPITSLTGAGATDITVS-GTGDILTVELSEQEKLASDDRTV 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217 Q++EIIR+RID++G E TIQR GS RILIQ+PG S L++++GTTA+++F+ V Sbjct: 186 RQALEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSASELKEIIGTTAQLTFNPVVGR 245 Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 ++ G V D DG Y VE ++G L A +FD +P V F+ Sbjct: 246 GTDADANAGVGNKVVPSLDEDGVFYTVEAAPVVTGEELVDAQPSFDQNG-RPAVSFRFNT 304 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR+F + T +NIG P A+VLD V++APVI IP G I+GNFTIE + +A +LR Sbjct: 305 TGARKFGDYTAENIGSPFAIVLDEEVVSAPVIQSHIPGGSGIITGNFTIEESTNMAILLR 364 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP L +EER +G +LG DSI G A + V +++FM + YG +G+ A+ ++ L Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKVATIVAFVGVLVFMALSYGLFGVFANIALIL 424 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 N+ L LSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++D G+ Sbjct: 425 NIALIFGALSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEGY 484 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 S+A S I D+NIT I V+LF G G VRGFAIT+GL I+ S+FTAI + R +++ Sbjct: 485 SKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFE 544 Query: 517 YKKMKSI 523 ++ K+I Sbjct: 545 RRRPKTI 551 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 89/175 (50%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G V I++ + +L+++ + + F + A LIL+I G +L G Sbjct: 379 TIGPELGQDSIDAGKVATIVAFVGVLVFMALSYGL-FGVFANIALILNIALIFGALSLIG 437 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K ID+ ++ L + Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELKA---GRGPARAIDEGYSKALSAILDA 494 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + G + FAI + GI+ + ++IF+ I++ ++ R Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFERRRPK 549 >gi|78356861|ref|YP_388310.1| preprotein translocase subunit SecD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219266|gb|ABB38615.1| protein-export membrane protein SecD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 530 Score = 234 bits (595), Expect = 7e-59, Method: Composition-based stats. Identities = 192/533 (36%), Positives = 297/533 (55%), Gaps = 20/533 (3%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + L ++ +GL LP+ P +P N++SLGLDL GG HL L VD D Sbjct: 6 RWRIALTLVVAVMGLAYTLPSI-PAFKSSPLQKILPDNKVSLGLDLMGGIHLTLGVDVDK 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQI-QNKITLSFADSRFKENIADKVTLFLQGVN 123 + L ++LR + EGI + R + +++ + + + + + Sbjct: 65 ALENALSQTGNDLREIARDEGIFLMRPRVVAGDRLEFILLKKEQRGELDSLLKKQFERL- 123 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 ++ + S+ S + + A++Q+++ IR RIDQ G++E I++ Sbjct: 124 -----TVSPPQVLNDGRVKYSLAFSSEYKKYLSNLALDQAVKTIRNRIDQFGVAEPDIRK 178 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN---- 239 +RI +QLPG DP R Q++G TA + F V + G+ Sbjct: 179 QQDNRIQVQLPGLNDPERAIQIIGKTAHLEFKMVRDDVDPANVARGIVPPGTEIREMQER 238 Query: 240 -------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 +V + ++G ++ A A+FD +P V ++F++ GAR F VT +N GK Sbjct: 239 GASGASIPVVVNREAVMTGENIVDARASFDQFN-QPYVIMTFNDRGARMFELVTGENKGK 297 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 +A+VLDG+V +APVI + I G+A I+G F+ A LA +LRAG+LP ++I+EER+V Sbjct: 298 RMAIVLDGKVYSAPVIQEKIRGGRASITGRFSDAEAHDLALVLRAGALPAPVHILEERSV 357 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G LG SI +G A +AG VL+V+FM+V YG GLVA+ ++ ++L LA L+ GATL Sbjct: 358 GPSLGQQSIDQGVTAALAGGVLVVIFMVVYYGFAGLVANVALSFTLVLILAGLAGFGATL 417 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAGI+L +G+AVD+N+L+ ERIREE RK + ++ G+SRA TI D+NIT +I Sbjct: 418 TLPGIAGIILTLGMAVDANVLIFERIREELRKGLTPRAAIQEGYSRATLTIVDANITTII 477 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 A V+L+ FG G +RGFA+T+ L IL SMFTAI + R +M ++ + + I Sbjct: 478 AAVILYQFGTGPIRGFAVTLSLGILASMFTAIFVSRVLMDIWSLKRQGRKLSI 530 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 83/176 (47%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + ++ I +G+ + + ++I++ + + + L A L + L A FG Sbjct: 356 SVGPSLGQQSIDQGVTAALAGGVLVVIFMVVYYGF-AGLVANVALSFTLVLILAGLAGFG 414 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ ++ ++ R I + + V Sbjct: 415 ATLTLPGIAGIILTLGMAVDANVLIFERIREELR---KGLTPRAAIQEGYSRATLTIVDA 471 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + +G I FA+ ++ GI+ + ++IF++ ++ R Sbjct: 472 NITTIIAAVILYQFGTGPIRGFAVTLSLGILASMFTAIFVSRVLMDIWSLKRQGRK 527 >gi|148263780|ref|YP_001230486.1| preprotein translocase subunit SecD [Geobacter uraniireducens Rf4] gi|146397280|gb|ABQ25913.1| protein-export membrane protein SecD [Geobacter uraniireducens Rf4] Length = 533 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 193/535 (36%), Positives = 285/535 (53%), Gaps = 23/535 (4%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65 W + L I L P + + +PK++I LGLDL+GG+HLV+EV+ Sbjct: 7 WRISLIVAFLFISFLYLTPTLVSPLP-SWWKGFLPKDKIHLGLDLQGGTHLVMEVETQKA 65 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 V G L + S +L L + I + + +++ L D +N+ V Sbjct: 66 VEGSLDLISTDLEDTLNAQNIRFKRVAKVGGDRVQLVLYDRGSADNVQKLVKKKY----- 120 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 L + + +++ A++Q++E IR RIDQ G+SE IQR Sbjct: 121 --PDLELLPLFDEGGFVNMQLRINEKEAQVRKDKAVQQALETIRNRIDQFGVSEPIIQRE 178 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------- 237 G I++QLPG +DP R +L+G TA++ F V N + D Sbjct: 179 GISHIVVQLPGIKDPKRAIELIGKTARLEFKLVDENVNAVTATPSSIPEDDEILVEKKTD 238 Query: 238 -------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +V+ K I+G L A D + ++P V I F+ GAR F +VT N+ Sbjct: 239 PATGAVSETPLVVKRKAMITGDLLTDAQVRIDSQYNQPYVAIEFNSTGARLFDQVTAANV 298 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 GK A+VLD + +APVI + I G AQISG+FT + A L +LRAGSLP + I++ Sbjct: 299 GKRFAIVLDNNIYSAPVIRERISGGSAQISGSFTEKEASDLGIVLRAGSLPAPVKIIQNV 358 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG LG DSI KG A + G+ L+V+FM + Y GLVA+F + LN+I + LS LGA Sbjct: 359 TVGPSLGQDSINKGLIAGLIGVALVVVFMTIYYKLSGLVANFGMVLNIIFLMGSLSALGA 418 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IA IVL IG++VDSN+L+ ERIREE R ++ S+D G+ +A+ TI DS++T Sbjct: 419 TLTLPGIAAIVLLIGMSVDSNVLIFERIREELRLGKTPMASIDAGYDKAFLTIMDSHVTT 478 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LI VLF FG G V+GFA+++ L I+I++FT++ R + + ++K + I Sbjct: 479 LITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLLATRVVFDLFLDRVRVKRLSI 533 Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 91/176 (51%), Gaps = 5/176 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I KG++ +I +++++ I +K L A ++L+I +G + G Sbjct: 361 GPSLGQDSINKGLIAGLIGVALVVVFMTIYYKLS-GLVANFGMVLNIIFLMGSLSALGAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +AA++ LIG SV+ V++++R+R+ ++L + ID ++ + + + Sbjct: 420 LTLPGIAAIVLLIGMSVDSNVLIFERIREELRL---GKTPMASIDAGYDKAFLTIMDSHV 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + +G + FA+ ++ GI++ +S+ +A ++ ++ R + R+ Sbjct: 477 TTLITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSL-LATRVVFDLFLDRVRVKRL 531 >gi|330830090|ref|YP_004393042.1| protein-export membrane protein SecD [Aeromonas veronii B565] gi|328805226|gb|AEB50425.1| Protein-export membrane protein SecD [Aeromonas veronii B565] Length = 617 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 172/530 (32%), Positives = 287/530 (54%), Gaps = 35/530 (6%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 I N P + + A+ + LGLDLRGG H ++EVD + + + + RS Sbjct: 99 FITALNLAPSTP--AWLEAIGAAPLKLGLDLRGGVHFLMEVDMAEALTKQQEQMVQDFRS 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+ + I +R++ +++ + F D +E + N D Sbjct: 157 ELRTQKIRYSGVRRVGDQVQVIFRDEADQERAVSHLRRQ--------NPDLTFTTEQKGD 208 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 E + LS+ I +V +A+EQ++ IIR R++++G++E +Q+ G+ RI+++LPG QD Sbjct: 209 EFILLAGLSEAKIKEVKKYALEQNITIIRNRVNELGVAEPLVQQQGAERIVVELPGIQDT 268 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHL 254 +R +++LG TA + FH V + G D +G +++ +V ++G H+ Sbjct: 269 ARAKEILGATATLEFHMVDETADIQAAADGRVPPSSKVYNDRNGRPVVLQKRVILTGDHI 328 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV------- 307 GA + FD + +P V+I D G + T+DN+GK +A V Sbjct: 329 VGAQSGFDEYS-RPQVNIKLDGQGGNKMANFTKDNVGKGMATVFIEYKPVGQPGPDGKRK 387 Query: 308 -----------INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 Q+ + +I+G A LA +LRAG+L + IVEER +G L Sbjct: 388 FRKQEEVINVATIQSRLGSQFRITGIDNANEAHNLALLLRAGALIAPIQIVEERTIGPSL 447 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415 G +I G AI +++IVLFM + Y +G VA+ ++ +N++L + ++S++ AT+TLP Sbjct: 448 GQQNIDSGMEAIGWAMLVIVLFMGIYYRAFGWVANLALCMNLVLIVGIMSMIPGATMTLP 507 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL +G+AVD+N+L+ ERIREE R + V ++ +GF RA+STI DSN+T+LI V Sbjct: 508 GIAGIVLTLGMAVDANVLIYERIREEIRNGRGVQQAIHLGFDRAFSTIADSNVTSLITCV 567 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +LF G GA++GFA+T+G+ + SMFTAI++ RA++ +++ + I Sbjct: 568 ILFGIGTGAIKGFALTLGIGLTASMFTAITVSRAIINLAWGGRRIDKLPI 617 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 86/205 (41%), Gaps = 6/205 (2%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + + ++ I +GP + ++ I G+ + + + +++++ I Sbjct: 414 DNANEAHNLALLLRAGALIAPIQIVEERTIGPSLGQQNIDSGMEAIGWAMLVIVLFMGIY 473 Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F A L +++ +G ++ G L +A ++ +G +V+ V++Y+R+R+ Sbjct: 474 YR-AFGWVANLALCMNLVLIVGIMSMIPGATMTLPGIAGIVLTLGMAVDANVLIYERIRE 532 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++ + I + +++ + I+ + + G I FA+ + G+ Sbjct: 533 EIR---NGRGVQQAIHLGFDRAFSTIADSNVTSLITCVILFGIGTGAIKGFALTLGIGLT 589 Query: 807 VAASSSIFIAAPILLF-IYDWRAKN 830 + ++I ++ I+ R Sbjct: 590 ASMFTAITVSRAIINLAWGGRRIDK 614 Score = 43.9 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ IG L A PN + + SA + L D Sbjct: 4 RYPLWKYLMVILVIAIGFLYAAPNLYGEDPALQV-SASRGAEVKL--------------D 48 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D V L+ ++ + G I + F ++ + D V L Sbjct: 49 TLDLVKETLEAAKIPVKHAAFEHGF-----------ILIRFKNTEDQLKARDIVANKL 95 >gi|260221944|emb|CBA31014.1| Protein-export membrane protein secD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 627 Score = 233 bits (594), Expect = 9e-59, Method: Composition-based stats. Identities = 163/515 (31%), Positives = 275/515 (53%), Gaps = 21/515 (4%) Query: 19 LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78 I N L +S + +A+ + + LGLDLRGG H +L+VD + + + ++R Sbjct: 104 AYIVALNLLSRSP--AWLTALHASPMYLGLDLRGGVHFMLQVDMQAALTKRAESLAGDIR 161 Query: 79 SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT 138 + L+++ + + + + + F D+ + + D + Sbjct: 162 TVLREKNVRHSGISRNAQTVEVRFRDAATADAAKRIIQDQF--------ADLETVSSTDG 213 Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198 + ++ + + + A++Q++ + RI+++G++E IQ+ G RI++QLPG QD Sbjct: 214 ADVKLVASIKPVSAKTIQEQALKQNITTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQD 273 Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISG 251 ++ + +LG TA + V + G + D +G +V+ +V ++G Sbjct: 274 TAKAKDILGRTATLEVRLVDEGTEARSAETGTGPVPFGSERYLDREGRPVIVKKQVILTG 333 Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPV 307 +L A FD +T +P V++S D GAR F +VTR+NI K + G V+TAPV Sbjct: 334 ENLTDAQPGFDSQTQEPTVNLSLDAKGARIFRDVTRENINKRMAILLFEKGKGEVVTAPV 393 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 I I G+ QISG T A A +LRAGSL + I+EER +G LG+++I KG + Sbjct: 394 IRSEISGGRVQISGRMTTVEAADTALLLRAGSLAAPMEIIEERTIGPSLGAENIAKGFQS 453 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427 + G + +FM V Y +G+++ ++ N++L +A+LS+L ATLTLP +A + L +G+A Sbjct: 454 VSWGFTAVAIFMCVYYMLFGMISSIALAFNLLLLVAVLSMLQATLTLPGMAAMALVLGMA 513 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 +D+N+L+NER+REE R S ++ G+ RA++TI DSN+T LIA + L FG G VRG Sbjct: 514 IDANVLINERVREELRNGASPQAAIHAGYDRAWATIIDSNVTTLIAGLALLAFGSGPVRG 573 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FA+ L IL SMF+ + R ++ +K Sbjct: 574 FAVVHCLGILTSMFSGVFFSRGVVNLWYGRQKKLK 608 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 83/212 (39%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + E I KG V A+ Sbjct: 403 VQISGRMTTVEAADTALLLRAGSLAAPMEIIEERTIGPSLGAENIAKGFQSVSWGFTAVA 462 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 I++ + + F + + L ++ + ++ L +AA+ ++G +++ V++ Sbjct: 463 IFMCVYY-MLFGMISSIALAFNLLLLVAVLSMLQATLTLPGMAAMALVLGMAIDANVLIN 521 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ S + I + + +++ I+ L + +G + FA+ Sbjct: 522 ERVREELR---NGASPQAAIHAGYDRAWATIIDSNVTTLIAGLALLAFGSGPVRGFAVVH 578 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S +F + ++ Y + K + Sbjct: 579 CLGILTSMFSGVFFSRGVVNLWYGRQKKLKTV 610 Score = 44.3 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 25/120 (20%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + + L ALPN +S ++V Sbjct: 4 RYPVWKYAIILVALVVSGLYALPNLFGESPA-------------------------VQVS 38 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + LK G+ ++ + FAD+ + D + + Sbjct: 39 AAKSSVKVDTAVLARVEQTLKDAGLTADAVALEGTSVKARFADTDTQLKAKDAIQKAINP 98 >gi|146276508|ref|YP_001166667.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides ATCC 17025] gi|145554749|gb|ABP69362.1| protein-export membrane protein SecD [Rhodobacter sphaeroides ATCC 17025] Length = 554 Score = 233 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 195/553 (35%), Positives = 309/553 (55%), Gaps = 32/553 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLP------------------------QSMLDRFP 36 + W +L IC + +L A PNFL + +P Sbjct: 2 LHFPVWKRVLIWGICALAILYAAPNFLYGRVESHNDAVAAIEKAGGTATPEQAEAVALWP 61 Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI-- 94 +P + ++LGLDLRGG+HL+ EV +D + E+R L+ V S+R+ Sbjct: 62 DWLPSSIVNLGLDLRGGAHLLAEVRVEDVYEARMDGLWPEVRDALRGLRDQVGSIRRQTA 121 Query: 95 -QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153 ++ ++ + D Q V S + + ++ V++ + I L+ Sbjct: 122 PAGELRIAISRPEGMPAALDAARKLAQPVISFTGMG-QSDIEVSSQNDVLVIRLTDAERT 180 Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 + S ++QS+EIIR+R+D++G E TIQR G RILIQ+PG + L+ L+GTTAK++ Sbjct: 181 AMDSRTVQQSLEIIRRRVDEVGTREPTIQRQGEDRILIQVPGIGSAAELKSLIGTTAKLT 240 Query: 214 FHKVLPNNSKKGFMFGV---RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 FH VL ++ + G Y++E ++G L A +FD +P V Sbjct: 241 FHPVLSRTAEAPPSASGDLVLPASNEQGIYYVLERAPVVTGEELVDAQPSFDQNN-RPAV 299 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 F+ GAR F + T NIGKP A+VLD V++APVI I G I+GNF++E + Sbjct: 300 SFRFNPSGARLFGDYTAQNIGKPFAIVLDDEVISAPVIQAHIAGGSGIITGNFSVEESTE 359 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LA +LRAG+LP ++ +EER +G +LG DSI G A + G++ +V FMI YG +G++A Sbjct: 360 LAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVAFMIASYGWFGVLA 419 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + ++ +N++ LALLS++GATLTLP IAGIVL IG+AVD+N+L+ ERIREE R+ + Sbjct: 420 NIALAINMMAILALLSVIGATLTLPGIAGIVLTIGVAVDANVLIFERIREELRQGKMPAR 479 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 ++++GF +A+S I D+N T + V++F G G VRGFA+T+ + I S+FTA+ + R + Sbjct: 480 AIELGFQKAFSAILDANATTFLVAVIMFLVGAGPVRGFAVTLTIGIFTSVFTAVYVTRIL 539 Query: 511 MIFIIRYKKMKSI 523 + +++ ++I Sbjct: 540 VATWFAWRRPRAI 552 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 G+ + V + + T +GP++ ++ I G I+ IA++ Sbjct: 347 IITGNFSVEESTELAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVA 406 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ + W F + A L +++ L ++ G L +A ++ IG +V+ V++++ Sbjct: 407 FMIASYGW-FGVLANIALAINMMAILALLSVIGATLTLPGIAGIVLTIGVAVDANVLIFE 465 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ ++ I+ + + + F+ + M + G + FA+ + Sbjct: 466 RIREELRQ---GKMPARAIELGFQKAFSAILDANATTFLVAVIMFLVGAGPVRGFAVTLT 522 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831 GI + +++++ ++ + WR A Sbjct: 523 IGIFTSVFTAVYVTRILVATWFAWRRPRA 551 >gi|269965156|ref|ZP_06179290.1| protein export protein SecF [Vibrio alginolyticus 40B] gi|269830142|gb|EEZ84369.1| protein export protein SecF [Vibrio alginolyticus 40B] Length = 315 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 162/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SI+ SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAEKTIGFMRWSKVAFVFSIIMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ L+S GD + QNF + +VRL+ + D +T +++ Sbjct: 61 NLEEIRAALDSKGFGDATVQNFGSAREVMVRLRPRD-DVSGETLGNQIIGAIKDGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +L+Y+ +RF+W A GA+ L DI TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILLYVSMRFEWRLAAGAVMALAHDIIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D++D SI +TL Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + + GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297 >gi|222056531|ref|YP_002538893.1| protein-export membrane protein SecD [Geobacter sp. FRC-32] gi|221565820|gb|ACM21792.1| protein-export membrane protein SecD [Geobacter sp. FRC-32] Length = 532 Score = 233 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 188/535 (35%), Positives = 284/535 (53%), Gaps = 24/535 (4%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65 W + L I L P +P+ + +PK++I LGLDL+GGSHLV+EV+ Sbjct: 7 WRISLIVGFLLISFLYMTPTLVPKLP--SWWGVLPKDKIHLGLDLQGGSHLVMEVETQKA 64 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 V G L + S +L L + I + R +++ L D + + + Sbjct: 65 VEGSLDLISTDLEDSLNAQNIRFKRVGRIGSDRVQLVLYDRGSADTVQKLIKKKY----- 119 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 L + + +++ A++Q++E IR RIDQ G+SE IQR Sbjct: 120 --PDLELLPLFDEGGFVNLQLRINEKEAQVRKDKAVQQALETIRNRIDQFGVSEPVIQRE 177 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------- 237 G + +++QLPG +DP R +L+G TA++ F V N + D Sbjct: 178 GINHVVVQLPGIKDPKRAIELIGKTARLEFKLVDENVNAVTATPSTIPEDDEILYEKKTD 237 Query: 238 -------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +V+ K I+G L A D + ++P V I F+ GAR F +VT N+ Sbjct: 238 PATGAVSETPLVVKRKAMITGDLLTDAQVRIDSQYNQPYVAIEFNSTGARLFDQVTAANV 297 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 K A+VLD + +APVI + I G AQISG+FT + A L +LRAGSLP + I++ Sbjct: 298 NKRFAIVLDNNIYSAPVIRERISGGSAQISGSFTEKEASDLGIVLRAGSLPAPVKIIQNV 357 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG LG DSI KG A + G+ L++ FM V Y GLVA+ + LN++ + L+ LGA Sbjct: 358 TVGPSLGQDSINKGLIAGLIGVALVICFMAVYYKLSGLVANMGMVLNIVYLMGALAALGA 417 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IA IVL +G++VDSN+L+ ERIREE R ++ +LD G+ +A+ T+ DS++T Sbjct: 418 TLTLPGIAAIVLLVGMSVDSNVLIFERIREELRLGKTAKAALDAGYDKAFLTVMDSHVTT 477 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LI VLF FG G V+GFA+++ L I+I++FT++ R + + K +K + I Sbjct: 478 LITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLLATRVIFDLFLERKNVKRLSI 532 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 91/181 (50%), Gaps = 5/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 VGP + ++ I KG++ +I ++ ++ + +K L A ++L+I +G A Sbjct: 355 QNVTVGPSLGQDSINKGLIAGLIGVALVICFMAVYYKLS-GLVANMGMVLNIVYLMGALA 413 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G L +AA++ L+G SV+ V++++R+R+ ++L + + +D ++ Sbjct: 414 ALGATLTLPGIAAIVLLVGMSVDSNVLIFERIREELRL---GKTAKAALDAGYDKAFLTV 470 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + + I+ + +G + FA+ ++ GI++ +S+ +A ++ ++ R R Sbjct: 471 MDSHVTTLITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSL-LATRVIFDLFLERKNVKR 529 Query: 833 I 833 + Sbjct: 530 L 530 >gi|294083976|ref|YP_003550733.1| protein-export membrane protein SecD [Candidatus Puniceispirillum marinum IMCC1322] gi|292663548|gb|ADE38649.1| protein-export membrane protein SecD [Candidatus Puniceispirillum marinum IMCC1322] Length = 527 Score = 233 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 202/533 (37%), Positives = 304/533 (57%), Gaps = 29/533 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ-------SMLDRFPSAMPKNRISLGLDLRGGSHLVL 58 W +L + +G+ ALPN P S ++ +P I+LGLDL+GGSHL+L Sbjct: 7 WKKLLVLFVILLGVFFALPNLAPTQNDNQSDSTVESVFGFLPGKHINLGLDLQGGSHLLL 66 Query: 59 EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 VD D L + +R + + I ++ + ++ D+ + + Sbjct: 67 RVDMDIVEQERLDSIGETIRQEFRNDKIRFADLKVDGKAVHVTIRDADDADKAEAILNEL 126 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 G+N V + I S+ + ++ S+ I QS+EIIR+R+D G E Sbjct: 127 ATGLN------------VASNALVYVISFSETGLTELQSNTIAQSIEIIRRRLDPEGTKE 174 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-- 236 IQR G R+L+QLPG DP +++LLG TAK++F V + + + R S Sbjct: 175 PVIQRQGLDRVLVQLPGVDDPEAVKRLLGRTAKLTFQLVDMRITPQEAVERGRVPPGSIL 234 Query: 237 ------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 DG +++E +V +SG L ATA+FD +P V D GA+RF VT NI Sbjct: 235 LPSDSEDGRNFVIEKRVMVSGEMLENATASFDQNN-QPAVSFQLDSAGAKRFGRVTGANI 293 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 G+P A+VLDG+V++AP I G QI+GNFT+ L+ +LRAG+LP L ++EER Sbjct: 294 GRPFAIVLDGKVVSAPTIQS-QIFGSGQITGNFTVAETNELSLVLRAGALPAPLIVMEER 352 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 ++G LG+DSI G A + GL L++++M + YG +G++AD ++ +NVIL +A LS L A Sbjct: 353 SIGPGLGADSIEAGKIAAIVGLCLVIVYMFLSYGTFGILADMALLVNVILIVAALSALQA 412 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAGIVL +G+AVD+N+L+ ERIREE ++ +SV ++D G+ RA STI DSN+T Sbjct: 413 TLTLPGIAGIVLTMGMAVDANVLIFERIREELKRGRSVMAAIDGGYQRAISTIVDSNLTT 472 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 L A L+ FG G ++GFA+T+G+ I SMFTA+ + R ++ + KK + Sbjct: 473 LFAASFLYIFGSGPIKGFAVTLGIGIATSMFTAVMVTRLFIVLWLERKKPNEL 525 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 79/179 (44%), Gaps = 4/179 (2%) Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 +GP + + I G + I+ +++Y+++ + F + A L++++ + Sbjct: 349 MEERSIGPGLGADSIEAGKIAAIVGLCLVIVYMFLSYG-TFGILADMALLVNVILIVAAL 407 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 + L +A ++ +G +V+ V++++R+R+ +K S ID + Sbjct: 408 SALQATLTLPGIAGIVLTMGMAVDANVLIFERIREELK---RGRSVMAAIDGGYQRAIST 464 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 V +++ + + ++G I FA+ + GI + +++ + ++ + + N Sbjct: 465 IVDSNLTTLFAASFLYIFGSGPIKGFAVTLGIGIATSMFTAVMVTRLFIVLWLERKKPN 523 >gi|254228674|ref|ZP_04922098.1| protein-export membrane protein SecF [Vibrio sp. Ex25] gi|262395133|ref|YP_003286987.1| protein-export membrane protein SecF [Vibrio sp. Ex25] gi|151938853|gb|EDN57687.1| protein-export membrane protein SecF [Vibrio sp. Ex25] gi|262338727|gb|ACY52522.1| protein-export membrane protein SecF [Vibrio sp. Ex25] gi|324039570|dbj|BAJ78590.1| protein-export membrane protein F-1 [Vibrio alginolyticus] Length = 315 Score = 233 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 161/299 (53%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SI SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAEKTIGFMRWSKVAFVFSIFMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEKPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ L++ GD + QNF + +VRL+ + D +T +++ Sbjct: 61 NLEKIRTALDAKGFGDATVQNFGSAREVMVRLRPRD-DVSGETLGNQIIGAIKDGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +L+Y+ +RF+W A GA+ L DI TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILLYVSMRFEWRLAAGAVMALAHDIIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D++D SI +TL Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-ADIMDASITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + + GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297 >gi|269962425|ref|ZP_06176775.1| protein export protein SecF [Vibrio harveyi 1DA3] gi|269832921|gb|EEZ87030.1| protein export protein SecF [Vibrio harveyi 1DA3] Length = 315 Score = 233 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 164/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SI+ SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAENTIGFMRWSKVAFVFSIVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ L+S GD + QNF ++ +VRL+ + D +T +++ Sbjct: 61 NLEEIRAALDSKGFGDATVQNFGSARDVMVRLRPRD-DMSGETLGNQIIGAIKEGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L DI TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSMRFEWRLAAGAVMALAHDIIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D++D SI +TL Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + + GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297 >gi|153835380|ref|ZP_01988047.1| protein-export membrane protein SecF [Vibrio harveyi HY01] gi|148868102|gb|EDL67268.1| protein-export membrane protein SecF [Vibrio harveyi HY01] Length = 315 Score = 233 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 162/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SI SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAENTIGFMRWSKVAFVFSIFMIAASIFTLSTKWLNWGLDFTGGTLIEVGFQQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ L+S GD + QNF ++ +VRL+ + D +T +++ Sbjct: 61 NLEEIRAALDSKGFGDATVQNFGSARDVMVRLRPRD-DMSGETLGNQIISAIKEGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L DI TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSMRFEWRLAAGAVMALAHDIIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D++D SI +TL Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + + GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297 >gi|91225154|ref|ZP_01260376.1| protein export protein SecF [Vibrio alginolyticus 12G01] gi|91190097|gb|EAS76368.1| protein export protein SecF [Vibrio alginolyticus 12G01] Length = 315 Score = 233 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 162/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SI+ SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAEKTIGFMRWSKVAFVFSIIMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ L+S GD + QNF + +VRL+ + D +T +++ Sbjct: 61 NLEEIRAALDSKGFGDATVQNFGSAREIMVRLRPRD-DVSGETLGNQIIGAIKDGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +L+Y+ +RF+W A GA+ L DI TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILLYVSMRFEWRLAAGAVMALAHDIIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D++D SI +TL Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + + GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297 >gi|254455574|ref|ZP_05069003.1| protein-export membrane protein SecF [Candidatus Pelagibacter sp. HTCC7211] gi|207082576|gb|EDZ60002.1| protein-export membrane protein SecF [Candidatus Pelagibacter sp. HTCC7211] Length = 296 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 103/290 (35%), Positives = 171/290 (58%), Gaps = 5/290 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRSNL 598 I F + S L I S+ LL GLN+GIDFKGG + + + +++S +R Sbjct: 2 IAFNKYYNHFNIFSSLLIIFSLVLLIFKGLNFGIDFKGGTLIELRSTDAKINVSSLRDKF 61 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 + +GD+S + F +K++L++ + + + + K + E VG Sbjct: 62 SQMDLGDVSVKKFGNDKDYLIKFENKDNKKNIIEEIKNNLDKSF---GNNFNFRRVENVG 118 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 PK+S EL++ G++ + +S AML YIWIRF+W F+LGAI L D+ TLG F+LF +E Sbjct: 119 PKVSSELLKSGVIAISLSLAAMLFYIWIRFEWQFSLGAILALFHDVIVTLGVFSLFSLEI 178 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 NL+ +AAVLT++GYS+ND VV++DR+R+N++ Y + I +L + SINETL R++ TS Sbjct: 179 NLSIIAAVLTIVGYSMNDTVVIFDRVRENLRKY-SDIKIFELTNISINETLSRTIITSAT 237 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++L + +GG ++ F++ M G++ SSI+IA +L+ + + Sbjct: 238 TLLALLAIYFFGGEILKGFSLAMILGVIFGTYSSIYIANTVLVRLRVSQK 287 >gi|89053575|ref|YP_509026.1| preprotein translocase subunit SecD [Jannaschia sp. CCS1] gi|88863124|gb|ABD54001.1| protein-export membrane protein SecD [Jannaschia sp. CCS1] Length = 556 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 197/553 (35%), Positives = 305/553 (55%), Gaps = 30/553 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSM-----------------------LDRFPS 37 ++ +L + +GL A+PNF ++ + +PS Sbjct: 2 LQIPLLNRLLIILTVLVGLSFAMPNFFYGTVERHNDALAEIERTGAQTPEQVADVAAWPS 61 Query: 38 AMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97 +P ++LGLDLRGG+HL+ EV +D + E+R L+ V ++R+I + Sbjct: 62 YLPATLVNLGLDLRGGAHLLAEVQVEDVYVQRMDSLWPEVRDALRGLRDTVGTIRRIDAE 121 Query: 98 ---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154 + + + V Q V S + L V+ I++ LS Sbjct: 122 PGLLQVRISQPEGMAAALAAVRELGQPVVSITGGFGESTLDVSGVGDIITVRLSDAEQAA 181 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 ++QS+EI+R+R+D+ G E TIQR G+ RILIQ+PG L++L+GTTA+++F Sbjct: 182 TNDRTLQQSIEIVRRRVDEAGTREPTIQRQGADRILIQVPGIGSAQELKELIGTTARLTF 241 Query: 215 HKVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 H V+ S R D G Y++E+ +SG L + F+ ++ P+V Sbjct: 242 HPVVGRASGPDQDTESRQIILPSIDEGGGYYILEETPVVSGDDLVDSQPGFEQQSGNPIV 301 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 F+ GAR F + T N+G P A+VLD V++APVI AI G QISG FT+E++ Sbjct: 302 SFRFNPSGARDFGDYTAANVGAPFAIVLDNEVISAPVIRSAITGGAGQISGRFTVESSTE 361 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LA +LRAG+LP ++ +EER +G +LG+DS+ G A + +++FMI YG +G+ A Sbjct: 362 LAILLRAGALPAEMTFLEERTIGPELGADSVQAGQTAALIAFAAVLIFMIASYGLFGVFA 421 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 ++ LNV L +LSL+GATLTLP IAGIVL IG+AVD+N+LV ERIREE + + Sbjct: 422 SIALVLNVGLIFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKTAKGPAR 481 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 ++++G+ RA S I D+NIT I +LF G G VRGF++T+G+ I+ S+FTAI + R + Sbjct: 482 AIELGYERALSAIIDANITTFIIATILFVLGSGPVRGFSVTLGIGIVTSVFTAIYVTRLL 541 Query: 511 MIFIIRYKKMKSI 523 ++F ++ K+I Sbjct: 542 LVFWFERRRPKTI 554 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 87/184 (47%), Gaps = 4/184 (2%) Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 T +GP++ + ++ G +I+ A+LI++ + F + A L+L++ Sbjct: 373 AEMTFLEERTIGPELGADSVQAGQTAALIAFAAVLIFMIASYGL-FGVFASIALVLNVGL 431 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 G +L G L +A ++ IG +V+ V+V++R+R+ +K T+ I+ Sbjct: 432 IFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELK---TAKGPARAIELGYE 488 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 L + ++ FI + V G + F++ + GIV + ++I++ +L+F ++ Sbjct: 489 RALSAIIDANITTFIIATILFVLGSGPVRGFSVTLGIGIVTSVFTAIYVTRLLLVFWFER 548 Query: 827 RAKN 830 R Sbjct: 549 RRPK 552 >gi|330685047|gb|EGG96719.1| export membrane protein SecF [Staphylococcus epidermidis VCU121] Length = 436 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 107/422 (25%), Positives = 210/422 (49%), Gaps = 22/422 (5%) Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +AVD+NI++ ERI++E R +++ + ++ TIFDSN+T +IA VLFFFG +V Sbjct: 1 MAVDANIIMYERIKDELRIGRTLKQAYSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSV 60 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD--------- 536 +GFA + L IL+ TA+ + R ++ ++ K + D Sbjct: 61 KGFATMLLLGILMIFVTAVFLSRLLLSLLVYSNLFKKKYWLFGVKKSDRHDISEGKDVHD 120 Query: 537 ----CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 F++ + +SIL + + +L+ LN GIDF G ++ + + + S Sbjct: 121 LKTSFEKWNFVKLAKPLISLSILIVVVGLVILYIFKLNLGIDFSAGTRVDLQSKESLSQS 180 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V ++ + + Q Q ++ + +K + Sbjct: 181 KVEKVVKDVGLEPDQIQINGSGNKNATVQFKQDLSQAKDNQLSDKMKSEFGNS------P 234 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 V P I +EL + ++ ++ +A+ ++IY+ +RF+W L ++ L+ D+ + F+ Sbjct: 235 QINTVSPLIGQELAKNAMLALVYAALGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAVFS 294 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT---TSISFRDLIDKSINETL 769 L +E +LT +AA+LT++GYS+ND +V +DR+R+N+ ++ D++++SI +T+ Sbjct: 295 LLRLEVDLTFIAAILTIVGYSINDTIVTFDRVRENLHKIKVITSTEQIDDIVNRSIRQTM 354 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 RS+ T + + V+ + ++G I +F++ + G++ SSIFIA P+ + + K Sbjct: 355 TRSINTVLTVVVVVVAILLFGAPTIFNFSLALLIGLISGVFSSIFIAVPLWGIMKKRQLK 414 Query: 830 NA 831 + Sbjct: 415 KS 416 >gi|256822295|ref|YP_003146258.1| protein-export membrane protein SecF [Kangiella koreensis DSM 16069] gi|256795834|gb|ACV26490.1| protein-export membrane protein SecF [Kangiella koreensis DSM 16069] Length = 312 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 165/298 (55%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + + F++ R + +S + I SI FT GLNYG+DF GG + V + D Sbjct: 1 MSFLNEDTNYDFLKVRKFAFALSAILIIASIVSFFTKGLNYGLDFTGGTLVEVSYEQDAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR L + I QNF K +R+ Q AQ V ++V + T Sbjct: 61 LQKVRQQLTEIDINGAVVQNFGSAKVVQIRMPQQDHIENAQ--VSDVVLATLASDGSKVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ VGP + EL +G + +I++ I ++IY+ +RF+W F++G++ L D+ +GF Sbjct: 119 KRDQSFVGPVVGEELKEQGGLAMIVALICIMIYVALRFEWKFSVGSVAALAHDVIIVVGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F++ +EF+LT +AA+L +IGYS+ND +VV+DR+R+N L + ++I+ SIN TL Sbjct: 179 FSITSVEFDLTVLAALLAVIGYSLNDTIVVFDRIRENFLLMRK-ATPEEVINNSINLTLS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R+V TS+ + +L + +GG I SFA + GI+V SS+FIA+P L + + Sbjct: 238 RTVMTSLTTMLVLLALFFFGGQTIHSFAEALIVGILVGTYSSVFIASPTTLALGITKE 295 >gi|154253477|ref|YP_001414301.1| protein-export membrane protein SecF [Parvibaculum lavamentivorans DS-1] gi|154157427|gb|ABS64644.1| protein-export membrane protein SecF [Parvibaculum lavamentivorans DS-1] Length = 316 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 121/300 (40%), Positives = 190/300 (63%), Gaps = 3/300 (1%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + LIPD QF++ R+ VG+S+L + S LL T GLN+GIDF+GGI + + + Sbjct: 1 MRHLKLIPDDTNFQFVKWRYIAVGLSLLVMVVSSALLITRGLNFGIDFEGGIVIEISTDG 60 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P D+S +R+++ L +G++ Q F + L+R+Q + E+V K ++ Sbjct: 61 PADISQLRADIGGLDLGEVQIQEFGQADDVLIRVQS--PRDGGEEASQEVVNKIRGQLGD 118 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + E+VGP++S EL++ GI+ V+IS ML+YIW RF+W F+LG++ L+ D+ T Sbjct: 119 TVEYRRVEVVGPQVSGELVQDGILAVVISIALMLVYIWFRFEWQFSLGSVIALVHDVMAT 178 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG F + +EFNLT++AA+LT++GYS+ND V+V+DR+R+N++ Y + LID SIN+ Sbjct: 179 LGLFCILQLEFNLTSIAAILTIVGYSMNDTVIVFDRVRENLRKY-KKMDLGALIDLSINQ 237 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R+V TS +++L + ++GG V+ F M FGI + SSIFIAAP+LL + R Sbjct: 238 TLSRTVMTSGTTLLALLALFIFGGEVLRDFTFAMIFGIFIGTYSSIFIAAPVLLTVGVTR 297 >gi|319941718|ref|ZP_08016040.1| SecD/SecF/SecDF export membrane protein:SecD export membrane protein [Sutterella wadsworthensis 3_1_45B] gi|319804651|gb|EFW01518.1| SecD/SecF/SecDF export membrane protein:SecD export membrane protein [Sutterella wadsworthensis 3_1_45B] Length = 631 Score = 232 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 181/506 (35%), Positives = 283/506 (55%), Gaps = 20/506 (3%) Query: 30 SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ P + + LGLDLRGG H +L+VD + + +LR+ L+ + I Sbjct: 115 NLVPNTPRWLLSINALPMYLGLDLRGGVHFLLQVDMRAALTKRADAIAADLRTQLRDKRI 174 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + +I N + +SFA + ++ D + + L K ++ Sbjct: 175 RHTGISRIGNDVEVSFATAEERDRANDLLRNTQPDLLLTLPEASKAPYVIHAE------- 227 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LSQ I V ++A++Q++ + RI+++G++E I + G+ RI++QLPG QD ++ + +L Sbjct: 228 LSQKAIQNVQNYALKQNISTLHNRINELGVAEPVIAQQGADRIVVQLPGVQDTAKAKDIL 287 Query: 207 GTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 G TA + V + FG D DG LV+ +V ++G +LN A Sbjct: 288 GRTATLEVRLVDDSPEALAQLAQGTVPFGDERFTDRDGRPILVKRRVILTGENLNDAQPG 347 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSGK 316 FD +T +P V++ D GAR F EVTR+N+G+ + G V+TAPVI Q I G+ Sbjct: 348 FDSQTQEPTVNLELDNRGARIFQEVTRENVGRRMAILLFEKGKGEVVTAPVIRQEIGGGR 407 Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376 QISG T A A +LRAGSL + IVEER +G LG +I G + + G ++I Sbjct: 408 VQISGQMTTMEATDTALVLRAGSLAAPMEIVEERLIGPSLGEANIEAGFRSTLYGFIVIA 467 Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 +FM V Y +G+V+ S+ NV++ +A+LS+L ATLTLP IA I L +G+AVDSN+L+NE Sbjct: 468 VFMAVYYQVFGVVSAISLICNVMMLIAILSMLQATLTLPGIAAIALTLGMAVDSNVLINE 527 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 R+REE R + ++ G+ RA++TI DSN+T+LIA + L FG G VRGFA+ L I Sbjct: 528 RVREELRIGRQPQTAISEGYERAFATILDSNVTSLIAGLALLIFGSGPVRGFAVVHCLGI 587 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKS 522 S+FT++ + RA++ I +K + Sbjct: 588 GTSIFTSVIVSRALINLIYGRQKKLT 613 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 86/208 (41%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I ++GP + I G + I + Sbjct: 408 VQISGQMTTMEATDTALVLRAGSLAAPMEIVEERLIGPSLGEANIEAGFRSTLYGFIVIA 467 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + ++ F + + +LI ++ + ++ L +AA+ +G +V+ V++ Sbjct: 468 VFMAVYYQV-FGVVSAISLICNVMMLIAILSMLQATLTLPGIAAIALTLGMAVDSNVLIN 526 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ +++ + I + + +++ + I+ L + ++G + FA+ Sbjct: 527 ERVREELRI---GRQPQTAISEGYERAFATILDSNVTSLIAGLALLIFGSGPVRGFAVVH 583 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI + +S+ ++ ++ IY + K Sbjct: 584 CLGIGTSIFTSVIVSRALINLIYGRQKK 611 >gi|114771851|ref|ZP_01449244.1| protein-export membrane protein SecD [alpha proteobacterium HTCC2255] gi|114547667|gb|EAU50558.1| protein-export membrane protein SecD [alpha proteobacterium HTCC2255] Length = 553 Score = 232 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 202/552 (36%), Positives = 315/552 (57%), Gaps = 31/552 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSA 38 ++ + IL ++ +G L A+PN S +PS Sbjct: 2 LQFSLTKKILIWVVVVLGFLFAMPNGFYNRVESVNDARMQLENGNDTPEIISQASNWPSF 61 Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK- 97 +P ++LGLDLRGG+HL+ V D + Y E+R+ L+KE + ++R+I + Sbjct: 62 LPSALVNLGLDLRGGAHLLARVRVDQVYEARMDAYWPEVRNALRKERASIGTIRRIDGEN 121 Query: 98 --ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + + ++ + + V+ + V + L+ ++++VT+ E I I LS+ Sbjct: 122 YDLRVRISEPSQINHAVEVVSALARPVTT-LSGAGSRDIVVTSIEDTIIIELSEAEKIAT 180 Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215 + ++QS+EIIR+R+D+ G E TIQR G+ R+LIQ+PG L+ ++G TAK++FH Sbjct: 181 DTRTMDQSLEIIRRRVDEAGTREPTIQRQGTDRVLIQVPGIGSAEELKSIIGKTAKLTFH 240 Query: 216 KVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 KV+ S R +D +G Y++E I+G HL A FD +P V Sbjct: 241 KVIQRTSNSDERVKNRQILLPAQDEEGVFYVLEKTPVINGDHLTDAQPAFDQNN-RPAVS 299 Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331 + GAR F + T +NIG P A+VLD V++AP I I G I+G F +E +L Sbjct: 300 FRLNTTGARIFGQYTAENIGTPFAIVLDQEVVSAPTIQSHISGGSGIITGQFGVEETTLL 359 Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391 + LRAG+LP +L ++E VG DLG DSI GT A + + +++FM + YG +G+ A+ Sbjct: 360 SIQLRAGALPAELEYLQESTVGPDLGQDSIDAGTLACIVAFIAVLVFMSLSYGLFGIFAN 419 Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 ++ +NV L A+LS++ TLTLP IAGIVL +G+AVD+N+LV ERIREE +K ++ + Sbjct: 420 VALIINVALIFAVLSVISGTLTLPGIAGIVLTVGMAVDANVLVFERIREELKKAKNPRKA 479 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 +++G+ RA+S I D+NIT LIA V+L FG G V+GFAIT+G+ I+ S+FTAI + R ++ Sbjct: 480 IELGYERAFSAIIDANITTLIAAVILLVFGSGPVKGFAITLGIGIVTSVFTAIWVTRLLI 539 Query: 512 IFIIRYKKMKSI 523 I K+ KSI Sbjct: 540 SIWIERKRPKSI 551 Score = 150 bits (378), Expect = 9e-34, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 86/181 (47%), Gaps = 4/181 (2%) Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 VGP + ++ I G + I++ IA+L+++ + + F + A LI+++ Sbjct: 374 YLQESTVGPDLGQDSIDAGTLACIVAFIAVLVFMSLSYGL-FGIFANVALIINVALIFAV 432 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 ++ L +A ++ +G +V+ V+V++R+R+ +K + + R I+ Sbjct: 433 LSVISGTLTLPGIAGIVLTVGMAVDANVLVFERIREELK---KAKNPRKAIELGYERAFS 489 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + ++ I+ + + V+G + FAI + GIV + ++I++ ++ + + Sbjct: 490 AIIDANITTLIAAVILLVFGSGPVKGFAITLGIGIVTSVFTAIWVTRLLISIWIERKRPK 549 Query: 831 A 831 + Sbjct: 550 S 550 >gi|91205515|ref|YP_537870.1| preprotein translocase subunit SecD [Rickettsia bellii RML369-C] gi|157827231|ref|YP_001496295.1| preprotein translocase subunit SecD [Rickettsia bellii OSU 85-389] gi|122425641|sp|Q1RIN3|SECD_RICBR RecName: Full=Protein-export membrane protein secD gi|91069059|gb|ABE04781.1| Protein-export membrane protein secD [Rickettsia bellii RML369-C] gi|157802535|gb|ABV79258.1| preprotein translocase subunit SecD [Rickettsia bellii OSU 85-389] Length = 514 Score = 232 bits (590), Expect = 3e-58, Method: Composition-based stats. Identities = 198/528 (37%), Positives = 309/528 (58%), Gaps = 22/528 (4%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+N W + L + ++ ALPNF +P + ++LGLDLRGG+HL+L+ Sbjct: 1 MQNLPKWKIFLSIICTIFAVICALPNFTQVKS-----KYLPHDSVNLGLDLRGGAHLLLD 55 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 VD D ++N ++ +D LR +++ IG ++ QN I L + + ++ Sbjct: 56 VDFDTYLNDTMENLADTLRKSFREDKIGYKNLLVKQNNIQLELRSQEELKPLKRIISK-- 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 + V + I + S++ + ++++ ++QS+EI+R R+D G E Sbjct: 114 ----------IDPEINVEANDNRIKLSYSESRLSELLNKVVDQSIEIVRMRVDSTGTKEP 163 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF----LRD 235 +Q+ G IL+Q+PGE+DP+ L+ +LG TAK+ FH V N + + + G L Sbjct: 164 ILQKQGDRHILLQVPGEEDPTYLKNILGKTAKLIFHLVDENANVEEAVKGHVPMGSMLVQ 223 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 D YLV K I G A + + VV SF+ +G++ F EVT++N+GK LA Sbjct: 224 GDRMGYLVVKKKAILGGDSLTTAAASFDQNSQAVVSFSFNSLGSKLFGEVTKNNVGKHLA 283 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLD ++L+AP INQ I G ISG+FT+E+A LA +LRAGSLP L I+EER++G + Sbjct: 284 IVLDNKLLSAPTINQPIMGGSGIISGDFTVESANELALLLRAGSLPAPLKIIEERSIGPN 343 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG+DSI G A + G + +FM+ YG GL A+ ++ L ++ LALLSL ATLTLP Sbjct: 344 LGADSIESGKKAGIIGFAAVCIFMVWSYGLLGLFANIALSLAMLYVLALLSLFQATLTLP 403 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI DSN+T LI Sbjct: 404 GIAGIILTMGMAVDANVLIYERIKEELNKGTSNLYAIKTGFESAFATILDSNLTTLIVAF 463 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 +L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K K + Sbjct: 464 LLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFKPKKL 511 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G II A+ I++ + L A L L + L +LF Sbjct: 339 SIGPNLGADSIESGKKAGIIGFAAVCIFMVWSYGL-LGLFANIALSLAMLYVLALLSLFQ 397 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + S I + + Sbjct: 398 ATLTLPGIAGIILTMGMAVDANVLIYERIKEEL---NKGTSNLYAIKTGFESAFATILDS 454 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S+I I +L+ I+ K ++ Sbjct: 455 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITK-LLIDIWVKYFKPKKL 511 >gi|114767461|ref|ZP_01446248.1| protein-export membrane protein SecD [Pelagibaca bermudensis HTCC2601] gi|114540471|gb|EAU43552.1| protein-export membrane protein SecD [Roseovarius sp. HTCC2601] Length = 562 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 190/556 (34%), Positives = 302/556 (54%), Gaps = 40/556 (7%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ-------------------------------SMLDR 34 W +L + GL++A PN + Sbjct: 7 WKRVLIWALVVAGLVLAAPNLFYNRVESHNDAVKAIEAQGSTAEREAQGSTAEREAQASV 66 Query: 35 FPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI 94 +P+ +P + ++LGLDLRGG+HL+ EV D ++ E+R L+ V ++R Sbjct: 67 WPTWLPSDLVNLGLDLRGGAHLLAEVRLSDVYAARMEALWPEVRDVLRDARDEVGTIRLQ 126 Query: 95 QNK---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + + + ++ + V Q V S + +I + LS+ Sbjct: 127 PSDPGILRVRISNPDGMARALELVRGLAQPVVSLTGAGATDLQVA-GDGSDIIVTLSEAE 185 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 ++QS+EIIR+RID++G E TIQR GS RILIQ+PG + L++++GTTA+ Sbjct: 186 QRATDERTMQQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKEIIGTTAQ 245 Query: 212 MSFHKVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 ++F V+ S G GV + +G Y++E ++G L A ++D + Sbjct: 246 LTFQPVVGRASSAGESAGVGNEVLPSLNEEGVFYILETAPVVTGEELVDAQPSYDQNG-R 304 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 P V+ F+ GAR+F + T +NIG P A+VLD V++APVI IP G I+GNF I Sbjct: 305 PAVNFRFNPSGARKFGDYTAENIGSPFAIVLDDEVISAPVIQSHIPGGSGIITGNFDIAE 364 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 + LA +LRAG+LP + +EER +G +LG DSI G A +++FM + YG +G Sbjct: 365 STNLAVLLRAGALPAGMEFLEERTIGPELGQDSIDAGKLATGVAFAAVLIFMFLSYGLFG 424 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 L A+ ++ LN+ L + +LS +GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + Sbjct: 425 LFANVALILNIGLIMGILSAIGATLTLPGIAGIVLTVGMAVDANVLIFERIREEIKSARG 484 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 ++++G+S+A S I D+NIT +I ++L+ G G VRGFAIT+G+ I+ S+FTAI + Sbjct: 485 PARAIELGYSKALSAIVDANITTVITAIILYVMGSGPVRGFAITLGIGIVTSVFTAIWVT 544 Query: 508 RAMMIFIIRYKKMKSI 523 R +++ ++ K++ Sbjct: 545 RLLIVMWFERRRPKTL 560 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 95/208 (45%), Gaps = 4/208 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 G+ V + + +GP++ ++ I G + ++ A+LI Sbjct: 355 IITGNFDIAESTNLAVLLRAGALPAGMEFLEERTIGPELGQDSIDAGKLATGVAFAAVLI 414 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++++ + F L A LIL+I +G + G L +A ++ +G +V+ V++++ Sbjct: 415 FMFLSYGL-FGLFANVALILNIGLIMGILSAIGATLTLPGIAGIVLTVGMAVDANVLIFE 473 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ +K ++ I+ ++ L V ++ I+ + + V G + FAI + Sbjct: 474 RIREEIK---SARGPARAIELGYSKALSAIVDANITTVITAIILYVMGSGPVRGFAITLG 530 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830 GIV + ++I++ +++ ++ R Sbjct: 531 IGIVTSVFTAIWVTRLLIVMWFERRRPK 558 >gi|303247263|ref|ZP_07333537.1| protein-export membrane protein SecD [Desulfovibrio fructosovorans JJ] gi|302491422|gb|EFL51310.1| protein-export membrane protein SecD [Desulfovibrio fructosovorans JJ] Length = 534 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 180/531 (33%), Positives = 285/531 (53%), Gaps = 23/531 (4%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + S++ +GL+ LP+ P +P + I+LGLDL+GG HL L VD D Sbjct: 6 RWRLAVISLVAFLGLIYMLPSVGPVKQ-SFLGKFLPDDVINLGLDLKGGIHLTLGVDVDK 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIG--VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122 + L ++R K +GI + L A ++ D + + Sbjct: 65 ALANSLVQMGRDVRDQAKDDGIAVLRPQTTPDGKHLQLVLATGDKRQAFDDMLANHFNVL 124 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + + ++ ++Q+++ IR RID+ G++E I+ Sbjct: 125 V------VDNVESGPDGKFTYKLSFTPRYKSELTRMTVDQAVKTIRNRIDEFGVAEPDIR 178 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG---- 238 + +RI IQLPG DP R +L+G TA + F V N G+ + Sbjct: 179 KQSDNRIQIQLPGLHDPERAIKLIGKTAHLEFKVVDDNADLDKAQKGILPPGEELSVLRH 238 Query: 239 ---------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 ++ ++G H++ A ANF + ++ V +SF G+R+F VT +N Sbjct: 239 RNPDGTYLERPIVLRSDAVMTGEHISDARANF-DRNNQAYVALSFTPSGSRQFERVTGEN 297 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + K LA+VLDG+V +AP I + I G+A I+G+FT E A LA +LRAG+LP ++I+E+ Sbjct: 298 VKKRLAIVLDGKVYSAPTIQEKISGGRASITGHFTTEEARDLAIVLRAGALPAPVSILEQ 357 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R+VG LG +SI +G + + G V+++ FM++ YG G VAD ++ N++L +A L+ G Sbjct: 358 RSVGPSLGQESIEQGVYSALVGGVIVIGFMVLYYGLAGFVADMALLFNMVLIMAGLAGFG 417 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 ATLTLP IAGI+L IG+AVD+N+++ ERIREE R S ++D G+ RA TIFD+N+T Sbjct: 418 ATLTLPGIAGIILTIGMAVDANVIIFERIREELRLGLSARKAVDTGYDRATLTIFDANVT 477 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 +IA +VL+ FG G +RGFA+T+ L + SMFTAI R + + + Sbjct: 478 TIIAAMVLYQFGTGPIRGFAVTLILGTVASMFTAIFFTRFLFDLWLSRRPP 528 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 80/178 (44%), Gaps = 4/178 (2%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VGP + +E I +G+ ++ + ++ ++ + + A L+ ++ + A Sbjct: 357 QRSVGPSLGQESIEQGVYSALVGGVIVIGFMVLYYGL-AGFVADMALLFNMVLIMAGLAG 415 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 FG L +A ++ IG +V+ V++++R+R+ ++L +S R +D + Sbjct: 416 FGATLTLPGIAGIILTIGMAVDANVIIFERIREELRL---GLSARKAVDTGYDRATLTIF 472 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + +G I FA+ + G V + ++IF + R +A Sbjct: 473 DANVTTIIAAMVLYQFGTGPIRGFAVTLILGTVASMFTAIFFTRFLFDLWLSRRPPDA 530 >gi|292670699|ref|ZP_06604125.1| protein-export membrane protein SecF [Selenomonas noxia ATCC 43541] gi|292647645|gb|EFF65617.1| protein-export membrane protein SecF [Selenomonas noxia ATCC 43541] Length = 306 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 83/295 (28%), Positives = 142/295 (48%), Gaps = 1/295 (0%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 R IS++ I + + G N+GIDF GG + + +PV L+ +RS Sbjct: 1 MPKFDIAGHRKIWFLISLVLIIPGVICMGMRGFNFGIDFTGGTIIDMRFEQPVTLAEIRS 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 +L + + Q E + + V +T+ V T+ E Sbjct: 61 SLAKYDLDGSTIQLSGAETGVESSENVMIRTVDLEETQRKEVMASLTQDVGPYTVLREEK 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG I ELI ++ ++IS +++Y+ RF+W F + A+ LI DI L F+ Sbjct: 121 VGATIGSELITNAVLALVISWALIILYVAYRFEWRFGVAAVLALIHDIVIVLAVFSFTQR 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775 + + + +AA+LT++GYS+ND +V++DR+R+N+KL+ +L+++SI +TL RS+YT Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDVNELVNRSIYQTLTRSLYT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + + +GG FA + G SSIFIA+P + + D + Sbjct: 241 VFTVLFTTFALYWFGGETTKDFAFALLIGFASGCYSSIFIASPFWIVLRDRTERR 295 >gi|257439810|ref|ZP_05615565.1| protein-export membrane protein [Faecalibacterium prausnitzii A2-165] gi|257197719|gb|EEU96003.1| protein-export membrane protein [Faecalibacterium prausnitzii A2-165] Length = 781 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 161/763 (21%), Positives = 291/763 (38%), Gaps = 60/763 (7%) Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 V + V + + +++ + ++ ++ + +I R+ + Sbjct: 28 VAVKYGDVTKTYIKGAQDIRFGVDIKGGVNVTFAPSDNYDATDDQLDAAQLVIENRLVGL 87 Query: 175 GISESTIQRLGSHRILIQLPGEQ------DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228 +++ + LI Q DP + +G+TA ++F K Sbjct: 88 NVTDYELYVDYDSDRLILEFPWQSGETDFDPEAAIEEIGSTAYLTFR-------KGSSAD 140 Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 G L S + F+ + K A + Sbjct: 141 GELILDGSMVESAAAQYGPVSGSTSEYYVALKFNDEGAKAF-------GDATTELYQSSG 193 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 I L I + S FT E +A + +G+LP L + Sbjct: 194 TISIWLDDQNVSTATVNAAITDGAAIITSSASNPFTQEDVVKMARQINSGALPFALTVDS 253 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 V LG +S+ A + LIV+ M +LY G +A ++ V TLA +S Sbjct: 254 YSTVSPSLGENSLSAMVLAGLIAYALIVVLMTLLYRLPGFLACIALAGQVAATLAFVSGY 313 Query: 409 G-----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463 TLTLP IAGI+L IG+ VD+N++ ERI+EE +S+ +L GF+R + I Sbjct: 314 FPVFESFTLTLPGIAGIILAIGMGVDANVITAERIKEELNNGKSLDGALKSGFARGLTPI 373 Query: 464 FDSNITALIATVVLFFFGGGAV----------------------RGFAITMGLSILISMF 501 D N+T +I +VL G + F T+ +L++ Sbjct: 374 IDGNVTIVIVAIVLMGAFGPSDGLFAKALHFVFFAFGPSTAGTIYAFGYTLLTGVLLNFV 433 Query: 502 TAISIVRAMMIFIIRYKKMKSID-INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560 + R M+ K +++ + + + I F+ R + IS Sbjct: 434 FGVFATRVMIRGAASIKALRNPWLYGAVKPGKEVKEKKPIDFVGLRKRFLTISTCLMAAI 493 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFL 618 I G+ +F GG + + + S V+ + + Sbjct: 494 ILCAAVFGVRLDTEFTGGAMITLSYQGEISTSEVQKTASTALENNGLTLQTGENVATGEQ 553 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPL--STIQNTEIVGPKISRELIRKGIVGVIIS 676 PG+ T +E + + E P + V + + ++K +V V+ S Sbjct: 554 TLKISMPGNETVTTDQVENLLTSLNEQYPDNAFAQLSLSNVSAAMGTKFLQKSLVAVVFS 613 Query: 677 AIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 + +L+YI RFK L A+ L+ D+ G F L + +AA+LT++GY Sbjct: 614 LLLILLYIGFRFKKIGGLTGGLMAVLALLNDLMVVFGTFVLLRTPLDGNFIAAMLTILGY 673 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---- 788 S+ND VVVYDR+R+N L F +L++ S+N++ R++ T++ +++ M V Sbjct: 674 SINDTVVVYDRIRENRALMGKKTPFEELVNHSVNQSARRTIITTVTTVMALGVMCVVSKL 733 Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +G I +FA P+ G++ +S+ ++ + D ++K A Sbjct: 734 YGLDSIFTFAFPLMMGMLSGVYTSLCVSTSAWVLWNDRKSKKA 776 >gi|218461454|ref|ZP_03501545.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium etli Kim 5] Length = 440 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 226/440 (51%), Positives = 315/440 (71%), Gaps = 4/440 (0%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MRN+PWLV YS+I IGLLIALPN LPQS+L R P+ +P ++SLGLDLRGGSHLVLEV Sbjct: 1 MRNSPWLVFTYSVIIVIGLLIALPNALPQSVLQRIPAWLPHEQVSLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 DE D LQ + R L+++GI ++ + QN+I ++ AD+ + ++ Sbjct: 61 DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADAAQSDAAVTELKTLAN 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +++ L+ + +L VT I++ S I + +A++QS+E+IRQR+DQ+G+SE T Sbjct: 121 PISTGLSAG-QADLDVTANGATITVGFSPAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQR+G++R+L+QLPG QDP+RLRQLLG+TAKMSFH + PNN GV ++D +G Sbjct: 180 IQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGP---GVTMMQDDEGRT 236 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + V D+VEISG L+ A +FDP T +P+V FD G+ RF E+TR N+G P A+VLD Sbjct: 237 HAVLDRVEISGDRLSDARVSFDPNTREPIVSFRFDSAGSTRFAEITRQNVGNPFAIVLDN 296 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +VL+APVI + I G QISGNF+ ++A LAAMLRAG+LP KL ++EER VGADLG+D+ Sbjct: 297 KVLSAPVIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G + +AG VL+ +F+ VLYG WG++A+ ++ ++ ILTL+ L+L+GATLTLP IAG+ Sbjct: 357 IKMGLYSGIAGFVLVAVFIFVLYGTWGILANVALLIHTILTLSALTLVGATLTLPGIAGV 416 Query: 421 VLGIGLAVDSNILVNERIRE 440 VLGIGLAVD+N+L+NERIRE Sbjct: 417 VLGIGLAVDANVLINERIRE 436 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 G + + I+ G+ I + + ++I++ + + + A L++ TL L G Sbjct: 349 GADLGADAIKMGLYSGIAGFVLVAVFIFVLYG-TWGILANVALLIHTILTLSALTLVGAT 407 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 L +A V+ IG +V+ V++ +R+R+ + Sbjct: 408 LTLPGIAGVVLGIGLAVDANVLINERIREETRK 440 >gi|117619109|ref|YP_856273.1| protein-export membrane protein SecD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560516|gb|ABK37464.1| protein-export membrane protein SecD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 617 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 171/530 (32%), Positives = 286/530 (53%), Gaps = 35/530 (6%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 I N P + + A+ N + LGLDLRGG H ++EVD + + + + RS Sbjct: 99 FITALNLAPSTP--AWLEAIGANPLKLGLDLRGGVHFLMEVDMAEALTKQQEQMVQDFRS 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+ + I +R+ +++ + F D + + N D Sbjct: 157 ELRTQKIRYSGVRRAGDQVQVLFRDEADQAKAISHLRRQ--------NPDLTFTTEQKGD 208 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 E + LS+ I +V +A+EQ++ IIR R++++G++E +Q+ G+ RI+++LPG QD Sbjct: 209 EFVLLAGLSEAKIKEVKKYALEQNITIIRNRVNELGVAEPLVQQQGAERIVVELPGIQDT 268 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHL 254 +R +++LG TA + FH V + G D +G +++ ++ ++G H+ Sbjct: 269 ARAKEILGATATLEFHMVDETADIQAAADGRVPPSSKVYNDRNGRPVVLQKRIILTGDHI 328 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV------- 307 GA + FD + +P V+I D G + T+DN+GK +A V Sbjct: 329 VGAQSGFDEYS-RPQVNIKLDGQGGNKMANFTKDNVGKGMATVFIEYKPVGQPGPDGKRK 387 Query: 308 -----------INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 Q+ + +I+G A LA +LRAG+L + IVEER +G L Sbjct: 388 FRKQEEVINVATIQSRLGSQFRITGIDNANEAHNLALLLRAGALIAPIQIVEERTIGPSL 447 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415 G +I G AI +++IVLFM + Y +G VA+ ++ +N++L + ++S++ AT+TLP Sbjct: 448 GQQNIDSGMEAIGWAMLVIVLFMGIYYRAFGWVANIALTMNLVLIVGIMSMIPGATMTLP 507 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL +G+AVD+N+L+ ERIREE R + V ++ +GF RA+STI DSN+T+LI V Sbjct: 508 GIAGIVLTLGMAVDANVLIYERIREEIRNGRGVQQAIHLGFDRAFSTIADSNVTSLITCV 567 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +LF G GA++GFA+T+G+ + SMFTAI++ RA++ +++ + I Sbjct: 568 ILFGIGTGAIKGFALTLGIGLSASMFTAITVSRAIINLAWGGRRLDKLPI 617 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 86/205 (41%), Gaps = 6/205 (2%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + + ++ I +GP + ++ I G+ + + + +++++ I Sbjct: 414 DNANEAHNLALLLRAGALIAPIQIVEERTIGPSLGQQNIDSGMEAIGWAMLVIVLFMGIY 473 Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F A L +++ +G ++ G L +A ++ +G +V+ V++Y+R+R+ Sbjct: 474 YR-AFGWVANIALTMNLVLIVGIMSMIPGATMTLPGIAGIVLTLGMAVDANVLIYERIRE 532 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++ + I + +++ + I+ + + G I FA+ + G+ Sbjct: 533 EIR---NGRGVQQAIHLGFDRAFSTIADSNVTSLITCVILFGIGTGAIKGFALTLGIGLS 589 Query: 807 VAASSSIFIAAPILLF-IYDWRAKN 830 + ++I ++ I+ R Sbjct: 590 ASMFTAITVSRAIINLAWGGRRLDK 614 Score = 40.8 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ IG L A PN + + SA + L D Sbjct: 4 RYPLWKYLMVVVVIAIGFLYAAPNLYGEDPALQI-SASRGAEVKL--------------D 48 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D V L ++ + G I + F ++ + D V L Sbjct: 49 TLDLVKETLDAAQIPVKHAAFEHGF-----------ILVRFKNTEEQLKARDIVANKL 95 >gi|322437194|ref|YP_004219406.1| protein-export membrane protein SecF [Acidobacterium sp. MP5ACTX9] gi|321164921|gb|ADW70626.1| protein-export membrane protein SecF [Acidobacterium sp. MP5ACTX9] Length = 320 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 91/309 (29%), Positives = 160/309 (51%), Gaps = 9/309 (2%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPVD 590 + + ++ +++ + S++FS+ + L G+DFKGG Q+ + + Sbjct: 1 MELFRQPNVDWLGKKWYFLAFSLVFSVAGVFSLLFWHHLPLGVDFKGGTQVVTRFDSTPN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDG-----EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 VR+ ++ I D Q G ++ L + V+ + Sbjct: 61 EDHVRAAMDKAGIHDARIQRISGAANEVSNQVVIALPESTATDSNHDQGRSAVENALKAN 120 Query: 646 --VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +IVGP ++L ++ + I S I ML+Y+W RF+ + + A+ + D Sbjct: 121 YSDSGFQVLQVDIVGPTAGKQLQKQAVYATIYSLIGMLVYLWFRFELIYGVAAVVAVFHD 180 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 T+G F+L E LT +AA+LTLIGYS+ND VVV+DR+R+N+ L + D++++ Sbjct: 181 TLITVGAFSLTNQEITLTVIAAILTLIGYSMNDTVVVFDRIRENLAL-SRREPLADVVNR 239 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 SIN+TL R+V +S F++VL + ++GG V+ F+ + GI++ SSI +AAP+L+ Sbjct: 240 SINQTLSRTVLSSGLTFLTVLSIYLFGGEVLHGFSFALVVGILIGTYSSIAVAAPMLVAW 299 Query: 824 YDWRAKNAR 832 DWRAK + Sbjct: 300 QDWRAKQGK 308 >gi|222832549|gb|EEE71026.1| predicted protein [Populus trichocarpa] Length = 1100 Score = 231 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 160/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS + ++ L T GL+ ++F GG + V + D Sbjct: 1 MEFFRIRKDIPFMKYALVLNAISFITFALAVFFLLTRGLHLSVEFTGGTVMEVAYTQTAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ VR + L D++ QNF ++ ++RL Q S AQ E V + + T Sbjct: 61 IAKVRDTVSKLGYSDVTVQNFGTSRDVMIRLPVQKDVSSAQQS--EQVLTALKKEDAEVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL+ G++ + + ++IY+ +RF+W F + A+ + D+ LGF Sbjct: 119 LRRTEFVGPQVGDELMHNGLMALGFVVLGIVIYLAMRFEWKFGVAAVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +A VL ++GYSVN+ VV++DR+R+ + + +S ++ID +I T+ Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LSTTEVIDHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M +GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|319789794|ref|YP_004151427.1| protein-export membrane protein SecF [Thermovibrio ammonificans HB-1] gi|317114296|gb|ADU96786.1| protein-export membrane protein SecF [Thermovibrio ammonificans HB-1] Length = 294 Score = 231 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 101/297 (34%), Positives = 159/297 (53%), Gaps = 4/297 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICL-LFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 F+ R+W S+ + + F G +GIDF GG+ + V P + Sbjct: 1 MERKFDFIGKRYWAYLFSLTLILGTWLYGAFIKGPKFGIDFTGGVLVLVKVEEPGITTGK 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 + + ++ QN GE F+++ + + +K+ TI Sbjct: 61 IREIFKGSVEGVTVQNVQGENEFMIKAPATGDTNKTVETIRRKLKEHFKS---GVTILKV 117 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 E++GP + +EL KGI+ +I + I +LIY+ RF++ FA+GA+ LI D T G F Sbjct: 118 EMIGPTVGKELREKGIMAIIYALIGILIYVAWRFEFIFAVGAVLALIHDALATTGVFMAV 177 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G EF+L +AA+LT+IGYS+ND +VVYDR+R+NMK+Y S F ++++ SIN+TL R++ Sbjct: 178 GREFSLPVIAALLTVIGYSINDTIVVYDRIRENMKVYLRSKPFEEIVNDSINQTLSRTII 237 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 TS+ VL + ++GG VI FA + GI V SSIFIA+ I++ Y + K Sbjct: 238 TSLTTLFVVLCLYLFGGGVINDFAFVLLVGITVGTYSSIFIASAIVVDWYKYMKKVK 294 >gi|119384157|ref|YP_915213.1| preprotein translocase subunit SecD [Paracoccus denitrificans PD1222] gi|119373924|gb|ABL69517.1| protein-export membrane protein SecD [Paracoccus denitrificans PD1222] Length = 554 Score = 231 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 191/550 (34%), Positives = 302/550 (54%), Gaps = 32/550 (5%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQ-----------------------SMLDRFPSAMP 40 W +L + +GLL A PN + +P+ +P Sbjct: 5 PFWKRLLILGLVALGLLYATPNLFYTKVEQHNDAITAAERNGFETPEEAAARAGWPNWLP 64 Query: 41 KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL---KKEGIGVFSMRQIQNK 97 ++LGLDLRGG+HL+ EV D + ELR L ++ V ++ + + Sbjct: 65 SGLVNLGLDLRGGAHLLGEVHVQDVYKARMDSLWPELRDALVAQREVVGAVRRVQAPEGQ 124 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 + + + + V + L + +L ++ + +++ LS Sbjct: 125 LAVEIGNPEQMAKAVEIARGLATPV-ASLTGAGQSDLAISASGNRLNVQLSDAEKAATDD 183 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 ++QS+EIIR+RID++G E TI R G RILIQ+PG L++L+GTTAK++F+ V Sbjct: 184 RTVQQSLEIIRRRIDEVGTREPTIMRQGKDRILIQVPGIGSAEELKELIGTTAKLTFNPV 243 Query: 218 LPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273 + + G D G Y++E+ ++G L A +FD P VD Sbjct: 244 VSRIADANARPGPGNVLLPSMDEPGVYYVIEESPVVTGEDLTDARPSFDQNG-APAVDFR 302 Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333 F GA+RF T NIG+P A+VLD +V++APVI QAI +G QISG ++ + LA Sbjct: 303 FGPSGAKRFGAYTSSNIGQPFAIVLDNQVISAPVIRQAITTGSGQISGAMNVDESTRLAV 362 Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393 +LRAG+LP ++ +EER +G +LG DSI G + + V +V +M+ YG +G+ A + Sbjct: 363 LLRAGALPAEMTFLEERTIGPELGQDSIDAGRLSSIIATVAVVAYMVASYGLFGVFASIA 422 Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453 + +NVIL L+++S++GATLTLP IAGIVL +G AVD+N+++ ERIREE R + + ++D Sbjct: 423 VIVNVILILSVMSMMGATLTLPGIAGIVLTVGTAVDANVIIYERIREELRAGKRIVKAID 482 Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513 GF A S I D+N+T+ IA V+FF G G V+GFA+T+ + ++ S+FTAI + R M++F Sbjct: 483 DGFGEAMSAIIDANVTSFIAAAVMFFLGSGPVKGFAVTLTIGLVTSVFTAIYLTRLMIVF 542 Query: 514 IIRYKKMKSI 523 + ++K K + Sbjct: 543 WLEWRKPKEL 552 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 91/203 (44%), Gaps = 4/203 (1%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 V + + T +GP++ ++ I G + II+ +A++ Y+ Sbjct: 352 MNVDESTRLAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRLSSIIATVAVVAYMVAS 411 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + F + A +I+++ L ++ G L +A ++ +G +V+ V++Y+R+R+ Sbjct: 412 YGL-FGVFASIAVIVNVILILSVMSMMGATLTLPGIAGIVLTVGTAVDANVIIYERIREE 470 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 ++ ID E + + ++ +FI+ M G + FA+ + G+V Sbjct: 471 LRAGKR---IVKAIDDGFGEAMSAIIDANVTSFIAAAVMFFLGSGPVKGFAVTLTIGLVT 527 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + ++I++ +++F +WR Sbjct: 528 SVFTAIYLTRLMIVFWLEWRKPK 550 >gi|163731951|ref|ZP_02139398.1| protein-export membrane protein SecF [Roseobacter litoralis Och 149] gi|161395405|gb|EDQ19727.1| protein-export membrane protein SecF [Roseobacter litoralis Och 149] Length = 326 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 174/307 (56%), Gaps = 9/307 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+ F + +GIS + + + GLNYGIDF+GG + + +P Sbjct: 1 MRLRLVKQNTNFDFFKRWKLWLGISGVMMVVAFASFMLQGLNYGIDFRGGTTIRTESTQP 60 Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD+ V R L SL++GD Q + ++R++ Q G + +++ + + Sbjct: 61 VDIGVYREALASLELGDISITEVFDPQFEADQNVAMIRIEAQEGGEAVEGQLISDIGAAL 120 Query: 643 TEIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 P + E VGPK+S ELI+ ++ V+++ A+LIYIW+RF+W FA GA+ L Sbjct: 121 QAADPGLKLPFASVESVGPKVSGELIQTAVIAVVLAIGAVLIYIWLRFEWQFAAGAVLAL 180 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + D+ T+G F+ I F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y ++ Sbjct: 181 VHDVILTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKR-PLNEV 239 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ++ SINETL R+ TS+ ++++ + V GG VI F M +G++V SSIF+A+ L Sbjct: 240 LNISINETLSRTFMTSVTTLLALIALFVLGGDVIRGFVFAMIWGVIVGTYSSIFVASAAL 299 Query: 821 LFIYDWR 827 L++ R Sbjct: 300 LYLGVKR 306 >gi|218667144|ref|YP_002426459.1| protein-export membrane protein SecF [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519357|gb|ACK79943.1| protein-export membrane protein SecF [Acidithiobacillus ferrooxidans ATCC 23270] Length = 337 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 172/305 (56%), Gaps = 1/305 (0%) Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 L + FM R+ +G+S L I S+ + GLNY IDF GG + + Sbjct: 15 SFISEVAMELFKVRTHVDFMSRRWIFLGVSALLIIASVAVFLVRGLNYSIDFTGGTLVEL 74 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ DL VR L D Q F G+++ L+RL+ PG+S A + V +K Sbjct: 75 AFSKTPDLGAVRGTLTQAGFHDAVVQTFGGDRDLLIRLRTVPGESSAVGNTILQVFRKDQ 134 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 P ++ TE VGP++ +EL KGI+ +II + +LIY+ RF+W FA+G + ++ D Sbjct: 135 VEYPDVQLRRTEYVGPEVGKELRNKGIMALIIVTLGILIYVGFRFEWRFAVGGVLAMLHD 194 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +GFFA+ EF+LT +AA+L ++GYS+ND VVV+DRMR++++ + + + Sbjct: 195 PILVVGFFAISHEEFSLTVIAALLVIMGYSLNDTVVVFDRMREDLRASRSG-DVAQIFNV 253 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 +INETL R+V TS F+ L + ++GG VI FA + G+VV SSIF+A+PI L++ Sbjct: 254 AINETLSRTVITSFITFMVALSLFLFGGPVIHGFATALVIGVVVGTYSSIFVASPIALWL 313 Query: 824 YDWRA 828 R Sbjct: 314 GLKRE 318 >gi|294101594|ref|YP_003553452.1| protein-export membrane protein SecF [Aminobacterium colombiense DSM 12261] gi|293616574|gb|ADE56728.1| protein-export membrane protein SecF [Aminobacterium colombiense DSM 12261] Length = 292 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 94/300 (31%), Positives = 158/300 (52%), Gaps = 8/300 (2%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 + + +FM+ R + +S+ + S+ LLFT GLN GIDF GG + V V + Sbjct: 1 MFRRDFSFKFMKHRRQAILLSLGLIVVSLVLLFTKGLNLGIDFTGGNLIQVEFASQVPVG 60 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 VR L + Q + + + V + + + P + Sbjct: 61 DVRDVLAEIGQKQAVIQGYSDNGVIIRVNV-------DTEESRKEVIQTLKDKYPGMEVL 113 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E VGP + +L R+ + V ++ + +L YI +RFK+ FA+ ++ L+ D TLG F+ Sbjct: 114 RFEKVGPVVGEKLRREAFLAVSLALLGILAYITVRFKFRFAVVSVIALMHDTIITLGIFS 173 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L G E +L +AA+LT++GYS+ND +VV+DR+R+N Y +++D SIN+TL R+ Sbjct: 174 LLGREISLPFIAAILTIVGYSLNDTIVVFDRVRENW-KYLRQEGLLEVLDMSINQTLSRT 232 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + TS+ F VL + +WGG+VI +F+ + GI+V SS+ IA+ +L Y ++ + Sbjct: 233 INTSLTTFFPVLALFIWGGAVIANFSFALLLGILVGTYSSVCIASSLLAEWYLRYPESKK 292 >gi|300022795|ref|YP_003755406.1| protein-export membrane protein SecF [Hyphomicrobium denitrificans ATCC 51888] gi|299524616|gb|ADJ23085.1| protein-export membrane protein SecF [Hyphomicrobium denitrificans ATCC 51888] Length = 324 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 116/304 (38%), Positives = 175/304 (57%), Gaps = 5/304 (1%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 I F P + + FM+ + + +SI+ + SI L+ GLNYG+DFKGG + + Sbjct: 6 IPVFKGFDFFPHDLNLPFMKVKGPALVLSIIAMVVSIGLIGIKGLNYGVDFKGGSLIELK 65 Query: 585 ANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 D+S +R L S+ +G + Q F + LVRL+ QPG Q +KK + Sbjct: 66 TKSGNADISALREKLNSIGVGSVQIQEFGSPDDVLVRLEEQPGGEAEQQA---ALKKVVD 122 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + E+VGP +S EL + V +A++ Y+W RF+W FALGA+ L D Sbjct: 123 ATSETYVERRVEVVGPAVSSELRMTSFIAVAAGILAIVAYVWFRFEWQFALGAVLALSHD 182 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + T+G FALF EF+L+ VAA+LT++GYSVND VVV DR+R+N++ + + L++ Sbjct: 183 VIVTVGIFALFQFEFDLSTVAALLTILGYSVNDTVVVSDRIRENLRKF-KKMELNQLLNL 241 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 SINETL R++ T M A ++ + V+GG VI +F + M G+V+ SSIFIAAP+L ++ Sbjct: 242 SINETLSRTILTGMTALAVLISLYVFGGEVIRNFNLAMLLGVVIGTYSSIFIAAPLLGYL 301 Query: 824 YDWR 827 R Sbjct: 302 GVKR 305 >gi|83954202|ref|ZP_00962922.1| protein-export membrane protein SecD [Sulfitobacter sp. NAS-14.1] gi|83841239|gb|EAP80409.1| protein-export membrane protein SecD [Sulfitobacter sp. NAS-14.1] Length = 549 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 199/544 (36%), Positives = 300/544 (55%), Gaps = 29/544 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43 W +L + C GL +ALPN ++ +P MP+ Sbjct: 7 WKRVLIILTCAAGLWLALPNAFYGPVEQHNDAVKAISVAGSTPELEAQKALWPEWMPERL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA 103 ++LGLDLRGG+HL+ EV+ +D ++ E+R L+ V + + ++ + Sbjct: 67 VNLGLDLRGGAHLLAEVNVEDVYANRMEAAWPEVRDALRSI-TPVRRVDAPKGELRVRIN 125 Query: 104 DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163 D+ + + V S L + +++V I+I L+ ++QS Sbjct: 126 DASVMAQALEATRALARPVQS-LTGTGQNDIVVNGANDIITITLTDAEKQATDERTMQQS 184 Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV----LP 219 +EIIR+RID++G E TIQR GS RILIQ+PG + L+ ++GTTA+++F+ V Sbjct: 185 LEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKAIIGTTAQLTFNPVVNRGAN 244 Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279 N+ G + ++ G Y++E ++G L A +FD +P V FD GA Sbjct: 245 ENAAPGLGNSLLPDAEAPGVFYIIETAPVVTGEQLVDAQPSFDQNG-RPAVSFRFDTTGA 303 Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339 R+F T +NIG P A+VLD V++AP I AIP G I+GNFT+E + LA +LRAG+ Sbjct: 304 RKFGTYTAENIGAPFAIVLDDEVISAPTIQSAIPGGSGIITGNFTVEESTNLAVLLRAGA 363 Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399 LP L VEER +G +LG DSI G A ++ FM YG +GL A+ ++ +NV Sbjct: 364 LPAGLTFVEERTIGPELGQDSIDAGKIATSVAFGAVLFFMWASYGLFGLFANIALIINVG 423 Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459 + LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++ +G+ RA Sbjct: 424 MIFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKTAKGPARAISLGYERA 483 Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519 S I D+NIT I +LF G G VRGFA+T+GL I+ S+FTA + R +++F ++ Sbjct: 484 LSAILDANITTFIIATILFVLGSGPVRGFAVTLGLGIVTSVFTAYFVTRLIVVFWFERRR 543 Query: 520 MKSI 523 K+I Sbjct: 544 PKTI 547 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 84/175 (48%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + ++ A+L ++W + F L A LI+++ G +L G Sbjct: 375 TIGPELGQDSIDAGKIATSVAFGAVLFFMWASYGL-FGLFANIALIINVGMIFGLLSLIG 433 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K T+ I L + Sbjct: 434 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---TAKGPARAISLGYERALSAILDA 490 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI + V G + FA+ + GIV + ++ F+ I++F ++ R Sbjct: 491 NITTFIIATILFVLGSGPVRGFAVTLGLGIVTSVFTAYFVTRLIVVFWFERRRPK 545 >gi|83943028|ref|ZP_00955488.1| protein-export membrane protein SecD [Sulfitobacter sp. EE-36] gi|83846036|gb|EAP83913.1| protein-export membrane protein SecD [Sulfitobacter sp. EE-36] Length = 549 Score = 230 bits (586), Expect = 8e-58, Method: Composition-based stats. Identities = 198/544 (36%), Positives = 299/544 (54%), Gaps = 29/544 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43 W +L + C GL +ALPN + +P MP+ Sbjct: 7 WKRVLIILTCAAGLWLALPNAFYGPVEQHNDAVKAISVAGATPELEEQKALWPEWMPERL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA 103 ++LGLDLRGG+HL+ EV+ +D ++ E+R L+ V + + ++ + Sbjct: 67 VNLGLDLRGGAHLLAEVNVEDVYANRMEAAWPEVRDALRSI-TPVRRVDAPKGELRVRIN 125 Query: 104 DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163 D+ + + V S L + +++V I+I L+ ++QS Sbjct: 126 DASVMAQALEATRALARPVQS-LTGTGQNDIVVNGANDIITITLTDAEKQATDERTMQQS 184 Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV----LP 219 +EIIR+RID++G E TIQR G+ RILIQ+PG + L+ ++GTTA+++F+ V Sbjct: 185 LEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSAAELKAIIGTTAQLTFNPVVNRGAN 244 Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279 N+ G + ++ G Y++E ++G L A +FD +P V FD GA Sbjct: 245 ENAAPGLGNSLLPDAEAPGVFYIIETAPVVTGEQLVDAQPSFDQNG-RPAVSFRFDTTGA 303 Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339 R+F T +NIG P A+VLD V++AP I AIP G I+GNFT+E + LA +LRAG+ Sbjct: 304 RKFGTYTAENIGAPFAIVLDDEVISAPTIQSAIPGGSGIITGNFTVEESTNLAVLLRAGA 363 Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399 LP L VEER +G +LG DSI G A ++ FM YG +GL A+ ++ +NV Sbjct: 364 LPAGLTFVEERTIGPELGQDSIDAGKIATSVAFGAVLFFMWASYGLFGLFANIALIINVG 423 Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459 + LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE + + ++ +G+ RA Sbjct: 424 MIFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKTAKGPARAISLGYERA 483 Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519 S I D+NIT I +LF G G VRGFA+T+GL I+ S+FTA + R +++F ++ Sbjct: 484 LSAILDANITTFIIATILFVLGSGPVRGFAVTLGLGIVTSVFTAYFVTRLIVVFWFERRR 543 Query: 520 MKSI 523 K+I Sbjct: 544 PKTI 547 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 84/175 (48%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + ++ A+L ++W + F L A LI+++ G +L G Sbjct: 375 TIGPELGQDSIDAGKIATSVAFGAVLFFMWASYGL-FGLFANIALIINVGMIFGLLSLIG 433 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ +K T+ I L + Sbjct: 434 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---TAKGPARAISLGYERALSAILDA 490 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI + V G + FA+ + GIV + ++ F+ I++F ++ R Sbjct: 491 NITTFIIATILFVLGSGPVRGFAVTLGLGIVTSVFTAYFVTRLIVVFWFERRRPK 545 >gi|110679781|ref|YP_682788.1| preprotein translocase subunit SecF [Roseobacter denitrificans OCh 114] gi|109455897|gb|ABG32102.1| protein-export membrane protein SecF [Roseobacter denitrificans OCh 114] Length = 326 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 174/307 (56%), Gaps = 9/307 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+ F + +GIS L + + GLNYGIDF+GG + + +P Sbjct: 1 MRLRLVKQNTNFDFFKRWKLWLGISGLMMVVAFVSFLLQGLNYGIDFRGGTTIRTESTQP 60 Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD+ V R L +L++GD Q + ++R++ Q G + +++ + + Sbjct: 61 VDIGVYREALAALELGDISITEVFDPQFEADQNVAMIRIEAQEGGEAVEGQLISDIGAAL 120 Query: 643 TEIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 P + E VGPK+S ELI+ ++ V+++ A+LIYIW+RF+W FA GA+ L Sbjct: 121 QAADPGLKLPFASVESVGPKVSGELIQTAVIAVVLAIGAVLIYIWLRFEWQFAAGAVLAL 180 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + D+ T+G F+ I F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y ++ Sbjct: 181 VHDVILTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKR-PLNEV 239 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ++ SINETL R+ TS+ ++++ + V GG VI F M +G++V SSIF+A+ L Sbjct: 240 LNISINETLSRTFMTSVTTLLALIALFVLGGDVIRGFVFAMIWGVIVGTYSSIFVASAAL 299 Query: 821 LFIYDWR 827 L++ R Sbjct: 300 LYLGVKR 306 >gi|254474864|ref|ZP_05088250.1| protein-export membrane protein SecF [Ruegeria sp. R11] gi|214029107|gb|EEB69942.1| protein-export membrane protein SecF [Ruegeria sp. R11] Length = 322 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 175/305 (57%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R LIP+ + F + +GIS + I GLNYGIDF+GG + + Sbjct: 1 MRLKLIPESTSFDFFKRWKLWLGISAVMIIVGFASFALQGLNYGIDFRGGTTIRTESTTA 60 Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 +D+ R L+ L++GD + + +VR+Q Q +E + + + Sbjct: 61 IDVGAYRDALQPLELGDVSISEVFDPTFEEDQHVAMVRIQAQDDGEAISGEQIEEINRAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + P + E VGPK+S EL++ ++ V ++ A+LIYIW+RF+W FALGA+ L+ Sbjct: 121 DTVAPGIKFVSVESVGPKVSGELVQTAVIAVALAIGAVLIYIWLRFEWQFALGAVAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I+F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y ++++ Sbjct: 181 DVVLTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKK-PLAEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINETL R++ TS+ ++++ + V GG VI F M +G+++ SSIF+A+ ILL+ Sbjct: 240 ISINETLSRTMMTSVTTLLALVSLYVLGGDVIRGFVFAMIWGVIIGTYSSIFVASTILLW 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|226329110|ref|ZP_03804628.1| hypothetical protein PROPEN_03013 [Proteus penneri ATCC 35198] gi|225202296|gb|EEG84650.1| hypothetical protein PROPEN_03013 [Proteus penneri ATCC 35198] Length = 354 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 96/320 (30%), Positives = 172/320 (53%), Gaps = 2/320 (0%) Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 ++ + + + + L I FMR ISIL I SI ++ G Sbjct: 1 MVVNALRNCLFKEHVVAQDYTVEQLNHGRKVIDFMRWDNVAFSISILLLIASIAIISMKG 60 Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 N+G+DF GG + + ++P DL +R +L++ D QNF ++ +VR+ G Sbjct: 61 FNWGLDFTGGTVIEINLSQPADLDKMRDSLDTAGFKDPLLQNFGSSRDIMVRMPPVEG-Q 119 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 Q +++ E+ + ++ E VGP + EL + G + ++ + I +LIY+ RF Sbjct: 120 AGQELGKKVIDVINAEVDNDAVVKRIEFVGPSVGSELAQTGAMALLSALICILIYVGFRF 179 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 +W ALGA+ L D+ TLG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N Sbjct: 180 EWRLALGAVIALAHDVVITLGVLSLFHIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENF 239 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + ++++ S+ +TL R++ TS + VL + ++GGS++ F++ M G+ + Sbjct: 240 RKIRRGTPY-EIMNVSLTQTLSRTIMTSATTLLVVLMLYIFGGSMLQGFSLVMLIGVSIG 298 Query: 809 ASSSIFIAAPILLFIYDWRA 828 SSI++A+ + L + R Sbjct: 299 TISSIYVASALALKMGMKRE 318 >gi|239818077|ref|YP_002946987.1| preprotein translocase subunit SecD [Variovorax paradoxus S110] gi|239804654|gb|ACS21721.1| protein-export membrane protein SecD [Variovorax paradoxus S110] Length = 627 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 158/512 (30%), Positives = 274/512 (53%), Gaps = 21/512 (4%) Query: 24 PNFLPQSMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF 80 P + +++ R P+ + + LGLDLRGG +L+VD ++ + ++ +LR+ Sbjct: 103 PYVVALNLVSRSPAWLTALHAFPMYLGLDLRGGVDFLLQVDMKGAIDKKAESFASDLRTT 162 Query: 81 LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140 + +GI S+ + I +SF D+ E + Q D + Sbjct: 163 FRDKGIRGTSVNRNGQAIEVSFRDAAALEAAKRLIQDQFQ--------DLATTDSQDGSN 214 Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200 + + ++ A++Q++ + RI+++G++E IQ+ G RI++QLPG QD + Sbjct: 215 WRLVATIKPEAARRLQDAALKQNITTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTA 274 Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------DGNQYLVEDKVEISGIH 253 + + +LG TA + V + + + +G +V+ +V ++G + Sbjct: 275 KAKDILGRTATLEMRLVDESAEGRAAELSGGPVPFGSEKFLERNGRPVIVKKQVLVTGEN 334 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQ 310 L A FD ++++P VD++ D G R +V+R+N K +A+++ + + Sbjct: 335 LTDAQPGFDQQSNQPKVDLTMDAKGGRIMRDVSRENYKKRMAMLIFEKGKGEVLTAPSIN 394 Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370 + QISG+ T+ A LA +LRAGSL + I++ER +G LG+D+I KG +++ Sbjct: 395 GELGNRFQISGSMTVAEAADLALLLRAGSLAAPMEIIQERTIGPSLGADNIEKGFKSVMY 454 Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430 G + I++FM Y +GL + ++ +N++L +A+LS+L ATLTLP IA + L IG+A+DS Sbjct: 455 GFLAIMVFMCAYYALFGLFSSIALAVNLMLLVAILSMLQATLTLPGIAAMALAIGVAIDS 514 Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490 N+L+NER+REE R S ++ G+ RA+ TI DSN+T LIA + L FG G VRGFA+ Sbjct: 515 NVLINERVREELRNGASPQAAIHAGYDRAWGTILDSNVTTLIAGIALLAFGSGPVRGFAV 574 Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 + I+ SMF+A+ R ++ F KK Sbjct: 575 VHCIGIVTSMFSAVFFSRGLVNFWYGQKKKLK 606 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 89/219 (40%), Gaps = 4/219 (1%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 L G + + + I +GP + + I KG V+ Sbjct: 394 NGELGNRFQISGSMTVAEAADLALLLRAGSLAAPMEIIQERTIGPSLGADNIEKGFKSVM 453 Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 +A+++++ + F L + L +++ + ++ L +AA+ IG ++ Sbjct: 454 YGFLAIMVFMCAYYAL-FGLFSSIALAVNLMLLVAILSMLQATLTLPGIAAMALAIGVAI 512 Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 + V++ +R+R+ ++ S + I + G + +++ I+ + + +G + Sbjct: 513 DSNVLINERVREELR---NGASPQAAIHAGYDRAWGTILDSNVTTLIAGIALLAFGSGPV 569 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 FA+ GIV + S++F + ++ F Y + K + Sbjct: 570 RGFAVVHCIGIVTSMFSAVFFSRGLVNFWYGQKKKLKTV 608 Score = 48.1 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 25/137 (18%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + ++ +GL+ +LPNF ++ + +A V Sbjct: 3 RYPVWKYAIIVIVLLVGLIYSLPNFFGEAPAVQVSAAKS------------------TVK 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D ++ LK G+ + + FA + D + L Sbjct: 45 VDAATQSRVEEA-------LKAAGLAPDLLTLEGGSLRARFATPDEQLKARDTLQRTLVP 97 Query: 122 VNSKLNVDPKKNLLVTT 138 + NL+ + Sbjct: 98 DPADPPYVVALNLVSRS 114 >gi|254490638|ref|ZP_05103823.1| protein-export membrane protein SecD [Methylophaga thiooxidans DMS010] gi|224464094|gb|EEF80358.1| protein-export membrane protein SecD [Methylophaga thiooxydans DMS010] Length = 574 Score = 230 bits (585), Expect = 1e-57, Method: Composition-based stats. Identities = 176/523 (33%), Positives = 291/523 (55%), Gaps = 35/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + ++LGLDLRGG H ++EVD + V L Y+ ++R L+ E I Sbjct: 60 NLAPNTPEWLSSLGAEPMNLGLDLRGGVHFLMEVDMNAAVKQALDGYASDIRLTLRDEKI 119 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ ++ + F + ++N ++ + + + +S+ Sbjct: 120 RYKQIKIDDQEVLVLFRSAADRDNAETLISREMDALQVAVEEGKADP--------TLSLK 171 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L++ + + + A++Q++ +R RI+++G++E T+Q+ GS+RI++QLPG QD ++ +++L Sbjct: 172 LTEVTLRETKTLALQQNITTLRNRINELGVAEPTVQQQGSNRIVVQLPGVQDTAQAKKIL 231 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V + + + G DG YL+ +V ++G H+ A + Sbjct: 232 GATATLEFRLVDFEHDVQDALNGRVPANSELYYHRDGRPYLLNKRVMLTGEHVINARSTL 291 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK----- 316 D ++ P V ++ D GAR F VTRDNIG P+AVV ++ + + Sbjct: 292 DAQSGSPAVSVTLDGKGARAFSNVTRDNIGNPMAVVFIESKSETREVDGELIKVRRQVPE 351 Query: 317 --------------AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 QI+G + A LA +LRAG+L ++IVEER VG LG D+I Sbjct: 352 IINVATIRDQLSKKFQITGLDSTTEARDLALLLRAGALAAPIDIVEERTVGPSLGQDNID 411 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G +++ G +++FM+V Y +GLVA+ ++ N+I +ALLS+L ATLTLP IAGIVL Sbjct: 412 QGFASVMIGFAFVLVFMVVWYRVFGLVANIALAANLIFIVALLSMLQATLTLPGIAGIVL 471 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R S S+ G+ +A+STI D+NIT LIA +VLF FG Sbjct: 472 TVGMAVDANVLIFERIREELRIGNSPQSSISAGYGKAFSTIADANITTLIAAIVLFGFGT 531 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFA+T+ L I+ SMFTAI RA++ + + + I Sbjct: 532 GSIKGFAVTLSLGIITSMFTAIMGTRAVVNLVYGRQHKPKLSI 574 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 101/264 (38%), Gaps = 4/264 (1%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 N D G V + V L ++ N ++ L + G Sbjct: 312 FSNVTRDNIGNPMAVVFIESKSETREVDGELIKVRRQVPEIINVATIRDQLSKKFQITGL 371 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + I VGP + ++ I +G V+I +L+++ + Sbjct: 372 DSTTEARDLALLLRAGALAAPIDIVEERTVGPSLGQDNIDQGFASVMIGFAFVLVFMVVW 431 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F L A L ++ + ++ L +A ++ +G +V+ V++++R+R+ Sbjct: 432 YRV-FGLVANIALAANLIFIVALLSMLQATLTLPGIAGIVLTVGMAVDANVLIFERIREE 490 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 +++ S + I + ++ I+ + + +G I FA+ ++ GI+ Sbjct: 491 LRI---GNSPQSSISAGYGKAFSTIADANITTLIAAIVLFGFGTGSIKGFAVTLSLGIIT 547 Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831 + ++I ++ +Y + K Sbjct: 548 SMFTAIMGTRAVVNLVYGRQHKPK 571 >gi|320540313|ref|ZP_08039965.1| putative SecYEG protein translocase auxillary subunit [Serratia symbiotica str. Tucson] gi|320029633|gb|EFW11660.1| putative SecYEG protein translocase auxillary subunit [Serratia symbiotica str. Tucson] Length = 322 Score = 230 bits (585), Expect = 1e-57, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 165/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + GIS+L + SI + G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYVAFGISLLLLVASIATMSVRGFNWGLDFTGGTVIEINLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P +L ++R LE D QNF ++ +VR+ G Q +++ + Sbjct: 65 PANLDLIRDRLEKAGFQDPIIQNFGSSRDVMVRMPPTTGT-AGQELGNKVINVINDSVDN 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + EL + G + ++++ I +LIY+ RF+W ALGA+ L D+ T Sbjct: 124 HAIVKRIEFVGPSVGSELAQNGGMALLVALICILIYVGFRFEWRLALGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 LGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTLMTSGTTLLVVLMLYIFGGAMLHGFSLAMLIGVSIGTLSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|308050484|ref|YP_003914050.1| protein translocase subunit secF [Ferrimonas balearica DSM 9799] gi|307632674|gb|ADN76976.1| protein translocase subunit secF [Ferrimonas balearica DSM 9799] Length = 314 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 89/299 (29%), Positives = 162/299 (54%), Gaps = 4/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F L+ I F++ +SI+ + S+ L G+N+G+DF GG + V + V Sbjct: 1 MFELLKVKGTIDFLKHAKVVSLLSIVLVVASLVSLGVRGINWGLDFTGGYVIEVNYGKAV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + +R +E I Q F ++ +VR+ + G+ ++ V+ + + Sbjct: 61 SPADLRRAVEGQDIEGAVVQQFGSARDLIVRIPPKAGEGN---ELVTKVEAAAKGLGNGA 117 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I+ E VGP++ +EL +G + V+++ I +L Y+ RF+W ALGA+ L D+ TLG Sbjct: 118 EIKRVEFVGPQVGKELAEQGGLAVLVALICILAYVAARFEWRLALGAVIALAHDVIVTLG 177 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L +EF+LT +AA+L ++GYS+ND +VV+DR+R+N + S +++ S+ +T+ Sbjct: 178 VFSLLQMEFDLTVLAALLAVVGYSLNDTIVVFDRVRENFRKMRKG-SPEHVVNTSVTQTM 236 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T+ V+ + + GG++I FA + GI V SSI++A+ + + R Sbjct: 237 SRTIITTGTTLAVVVALFLLGGTMIHGFATALLLGIGVGTYSSIYVASYASIRLGLTRE 295 >gi|255264227|ref|ZP_05343569.1| protein-export membrane protein SecD [Thalassiobium sp. R2A62] gi|255106562|gb|EET49236.1| protein-export membrane protein SecD [Thalassiobium sp. R2A62] Length = 554 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 193/548 (35%), Positives = 293/548 (53%), Gaps = 32/548 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43 W + + GLL+ALPN + +PS +P Sbjct: 7 WKRVAIWLTIAAGLLLALPNGFYTRVEAHNDANTQIELGITNAQVEADASLWPSFLPSGL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100 ++LGLDLRGG+HL+ EV +D + E+ L+ E ++R +++ + Sbjct: 67 VNLGLDLRGGAHLLAEVKVEDVYAARMTATWPEVVDVLRSERATFGTIRLQDSAPDELVV 126 Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160 + + V + V S + I + LS+ + Sbjct: 127 RIGEEAGVPRALELVRGLARPVVSLTGAGASDIDV-RAEGNNIIVTLSEAERLATDERTM 185 Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 +QS+EIIR+RID++G E TIQR G+ RIL+Q+PG ++ ++GTTA+++F V+ Sbjct: 186 QQSLEIIRRRIDEVGTREPTIQRQGAQRILVQVPGVGSAQEVKDIIGTTAQLTFQPVVGR 245 Query: 221 NSKKGFMFGVR-----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275 G D +G Y++E ++G L A FD +P V+ F+ Sbjct: 246 TGSADADAGSSANEIIPSLDEEGVFYILERTPVVTGEELVDAQPAFDQNG-RPAVNFRFN 304 Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335 GAR+F + T +NIG P A+VLD V++AP I IP G I+GNF++E + LA +L Sbjct: 305 PTGARKFGDYTAENIGSPFAIVLDDEVISAPTIQSHIPGGSGIITGNFSVEESTSLAVLL 364 Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395 RAG+LP +L +EER +G +LG DSI G A + ++ FM + YG +GL A+ ++ Sbjct: 365 RAGALPAELTFLEERTIGPELGQDSIDAGRIACLVAFAAVLFFMFLSYGLFGLFANVALI 424 Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455 +NV L LLSL+GATLTLP IAGIVL IG+AVD+N+L+ ERIREE + + ++++G Sbjct: 425 INVGLIFGLLSLIGATLTLPGIAGIVLTIGMAVDANVLIFERIREELKTAKGPARAIELG 484 Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 + +A S I D+NIT I V+LF G G VRGFAIT+GL IL S+FTAI + R +++ Sbjct: 485 YEKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLLVVIWF 544 Query: 516 RYKKMKSI 523 ++ K+I Sbjct: 545 ERRRPKTI 552 Score = 154 bits (388), Expect = 5e-35, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 89/175 (50%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + +++ A+L ++++ + F L A LI+++ G +L G Sbjct: 380 TIGPELGQDSIDAGRIACLVAFAAVLFFMFLSYGL-FGLFANVALIINVGLIFGLLSLIG 438 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++++R+R+ +K T+ I+ + L + Sbjct: 439 ATLTLPGIAGIVLTIGMAVDANVLIFERIREELK---TAKGPARAIELGYEKALSAILDA 495 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI+ + + G + FAI + GI+ + ++IF+ +++ ++ R Sbjct: 496 NITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLLVVIWFERRRPK 550 >gi|117926490|ref|YP_867107.1| protein translocase subunit secF [Magnetococcus sp. MC-1] gi|117610246|gb|ABK45701.1| protein translocase subunit secF [Magnetococcus sp. MC-1] Length = 311 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 105/295 (35%), Positives = 173/295 (58%), Gaps = 3/295 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 F+ R + S+ S+ LFT GLN+GIDF GG + V +P+DL+ VR Sbjct: 8 THFDFIGRRKPAIYASLFLIGVSLVSLFTQGLNFGIDFAGGTLIQVRFEKPMDLAPVRQA 67 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS--TIQNTE 655 + L +GD Q+F + L+R++ Q D+ AQ ++ V + I ++ E Sbjct: 68 IAPLDLGDTVVQSFGTPEEVLIRVEKQGADNAAQQAIVSGVLDALKPIAGEHGVEMRRVE 127 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP++ EL KG++ ++ + +A+LIYI RF+ FALGA+ L+ D+ T+GFF++ Sbjct: 128 YVGPQVGEELTEKGMLAMLYAMVAILIYISFRFELRFALGAVLALVHDVVLTMGFFSVLQ 187 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 EF L VAA+LT++GYS+ND +VVYDR+R+ MK +I++++N TL R++ T Sbjct: 188 KEFTLVVVAALLTVVGYSLNDTIVVYDRIREEMKRM-KRQPLATIINEAVNRTLSRTLIT 246 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 S+ + ++ + V GG+VI FA+ + FG+ + SSIF+A+P++L + + Sbjct: 247 SLTTVLVLIALFVLGGAVIHDFALTLLFGVGIGTYSSIFVASPLVLLMDPGSRRK 301 >gi|326404386|ref|YP_004284468.1| protein-export membrane protein SecF [Acidiphilium multivorum AIU301] gi|325051248|dbj|BAJ81586.1| protein-export membrane protein SecF [Acidiphilium multivorum AIU301] Length = 342 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 130/317 (41%), Positives = 204/317 (64%), Gaps = 2/317 (0%) Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574 R+ + +++ F L+PD IQFM+ RF G+ +S + S S+ L F GLN G+D Sbjct: 9 CRFSEARAMKFLTRPAFRLVPDGTRIQFMKGRFIGLAVSAILSTASVILFFHPGLNLGLD 68 Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 F+GG+ + V + D + +R+ L ++ + S Q+F G+K L+ L+ Q Q + Sbjct: 69 FRGGVVIQVATPQKPDFTRLRAELAAVHLPGASLQSFGGDKGVLISLESQDNAKDTQKSL 128 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + + + +P + I +T+ +G +S L ++G++ + IS + +L+YIW RF+W FA+ Sbjct: 129 AAA-EGVVKQNLPGAKILSTQAIGASVSATLFQQGLIALGISFLMILVYIWFRFEWQFAV 187 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 GA+ TLILD+TKT+GF + + F+L +AA+LT+IGYS NDKVVVYDRMR+N++ Y + Sbjct: 188 GAVATLILDVTKTIGFMVITRLPFDLVTIAAILTVIGYSTNDKVVVYDRMRENLRKY-KT 246 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 + R+LID SINETL R++ TS F++ LP+A++GG+ + FA M FGIVV SSSI+ Sbjct: 247 MPLRELIDLSINETLNRTLGTSSTVFLAALPLALFGGASLSGFAWVMLFGIVVGTSSSIY 306 Query: 815 IAAPILLFIYDWRAKNA 831 IAAPILL + + R + Sbjct: 307 IAAPILLLLGEHRLRRG 323 >gi|145299553|ref|YP_001142394.1| protein-export membrane protein SecD [Aeromonas salmonicida subsp. salmonicida A449] gi|142852325|gb|ABO90646.1| protein-export membrane protein SecD [Aeromonas salmonicida subsp. salmonicida A449] Length = 617 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 170/530 (32%), Positives = 286/530 (53%), Gaps = 35/530 (6%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 I N P + + A+ + LGLDLRGG H ++EVD + + + + R+ Sbjct: 99 FITALNLAPSTP--AWLEAIGAAPLKLGLDLRGGVHFLMEVDMAEALTKQQEQMVQDFRT 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+ + I +R++ +++ + F D + + N D Sbjct: 157 ELRTQKIRYSGVRRVGDQVQVLFRDEADQAKAVSHLRRQ--------NPDLTFTTEQKGD 208 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 E + LS+ I +V +A+EQ++ IIR R++++G++E +Q+ G+ RI+++LPG QD Sbjct: 209 EFILLAGLSEAKIKEVKKYALEQNITIIRNRVNELGVAEPLVQQQGAERIVVELPGIQDT 268 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHL 254 +R +++LG TA + FH V + G D +G +++ +V ++G H+ Sbjct: 269 ARAKEILGATATLEFHMVDETADIQAAADGRVPPSSKVYNDRNGRPVVLQKRVILTGDHI 328 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV------- 307 GA + FD + +P V+I D G + T+DN+GK +A V Sbjct: 329 VGAQSGFDEYS-RPQVNIKLDGQGGNKMANFTKDNVGKGMATVFIEYKPVGQPGPDGKRK 387 Query: 308 -----------INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 Q+ + +I+G A LA +LRAG+L + IVEER +G L Sbjct: 388 FRKQEEVINVATIQSRLGSQFRITGIDNANEAHNLALLLRAGALIAPIQIVEERTIGPSL 447 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415 G +I G AI +++IVLFM + Y +G VA+ ++ +N++L + ++S++ AT+TLP Sbjct: 448 GQQNIDSGMEAIGWAMLVIVLFMGIYYRAFGWVANLALTMNLVLIVGIMSMIPGATMTLP 507 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL +G+AVD+N+L+ ERIREE R + V ++ +GF RA+STI DSN+T+LI V Sbjct: 508 GIAGIVLTLGMAVDANVLIYERIREEIRNGRGVQQAIHLGFDRAFSTIADSNVTSLITCV 567 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +LF G GA++GFA+T+G+ + SMFTAI++ RA++ +++ + I Sbjct: 568 ILFGIGTGAIKGFALTLGIGLSASMFTAITVSRAIINLGWGGRRIDKLPI 617 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 86/205 (41%), Gaps = 6/205 (2%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + + ++ I +GP + ++ I G+ + + + +++++ I Sbjct: 414 DNANEAHNLALLLRAGALIAPIQIVEERTIGPSLGQQNIDSGMEAIGWAMLVIVLFMGIY 473 Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F A L +++ +G ++ G L +A ++ +G +V+ V++Y+R+R+ Sbjct: 474 YR-AFGWVANLALTMNLVLIVGIMSMIPGATMTLPGIAGIVLTLGMAVDANVLIYERIRE 532 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++ + I + +++ + I+ + + G I FA+ + G+ Sbjct: 533 EIR---NGRGVQQAIHLGFDRAFSTIADSNVTSLITCVILFGIGTGAIKGFALTLGIGLS 589 Query: 807 VAASSSIFIAAPILLF-IYDWRAKN 830 + ++I ++ I+ R Sbjct: 590 ASMFTAITVSRAIINLGWGGRRIDK 614 Score = 41.6 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L A PN + + SA + L Sbjct: 4 RYPLWKYLMVVFVIAIGFLYAAPNLYGEDPALQI-SASRGAEVKL--------------- 47 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 L + L + I V I + F ++ + D V L Sbjct: 48 ------ETLDQVKETLEAA----QIPVKHAAFEHGFILIRFKNTEDQLKARDVVASKL 95 >gi|39997711|ref|NP_953662.1| preprotein translocase subunit SecD [Geobacter sulfurreducens PCA] gi|39984603|gb|AAR35989.1| protein-export membrane protein SecD [Geobacter sulfurreducens PCA] gi|298506645|gb|ADI85368.1| protein export membrane protein SecD [Geobacter sulfurreducens KN400] Length = 533 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 187/534 (35%), Positives = 285/534 (53%), Gaps = 23/534 (4%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65 W L ++ + LL P + + +PK+RI LGLDL+GG+HLV+EV+ Sbjct: 7 WRFSLIALFITLSLLYLTPTLVSPLP-SWWKGLLPKDRIHLGLDLQGGTHLVMEVETQKA 65 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 V G L + + +L L + + + RQ +++ ++F D + + Sbjct: 66 VEGTLDLIATDLEDALSAKTLRYKQIARQGGDRVGMTFYDRGTADEAQKLLKDKY----- 120 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 + + +++ + A+ Q++E IR RIDQ G+SE I R Sbjct: 121 --PTMTLVPPYDEGGFVHLQLRMNEKEAQERKDRAVAQALETIRNRIDQFGVSEPVIARE 178 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------- 237 G I++QLPG DP R +L+G TA++ F V + G Sbjct: 179 GLTNIVVQLPGISDPKRAIELIGRTARLEFKLVDETVNPAIATPGTIPEDTEILMEKRTD 238 Query: 238 -------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 V+ K I+G L A D + ++P V I F+ GAR F +VT N+ Sbjct: 239 PTTGAVTEIPLAVKKKAIITGDLLTDAQIRIDSQFNQPYVAIEFNSTGARLFDQVTAANV 298 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 GK A+VLD + +APVI + I G AQISG+FT + A LA +LRAGSLP + I++ Sbjct: 299 GKRFAIVLDNTIYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVKIIQNV 358 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG LG DSI KG A G+ L++LFM + Y G+VA+F + LNV+ + L+ LGA Sbjct: 359 TVGPSLGEDSINKGLMAGAIGVALVILFMGIYYKLSGMVANFGMILNVLFLMGALAALGA 418 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IA IVL IG++VD+N+L+ ERIREE R ++ +LD G+ +A+ TI DS++T Sbjct: 419 TLTLPGIAAIVLLIGMSVDANVLIFERIREELRLGKTPIAALDSGYDKAFLTIMDSHVTT 478 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 LI VLF FG G V+GFA+++ L ++I++FTA+ +A+ F++ ++K + Sbjct: 479 LITAAVLFQFGTGPVKGFAVSLSLGVIINLFTALVGTKAIFDFVLNRLRVKRLS 532 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 83/174 (47%), Gaps = 5/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I KG++ I +++++ I +K + A +IL++ +G A G Sbjct: 361 GPSLGEDSINKGLMAGAIGVALVILFMGIYYKLS-GMVANFGMILNVLFLMGALAALGAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +AA++ LIG SV+ V++++R+R+ ++L + +D ++ + + + Sbjct: 420 LTLPGIAAIVLLIGMSVDANVLIFERIREELRL---GKTPIAALDSGYDKAFLTIMDSHV 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 I+ + +G + FA+ ++ G+++ +++ I + R K Sbjct: 477 TTLITAAVLFQFGTGPVKGFAVSLSLGVIINLFTALVGTKAIFDFVLNRLRVKR 530 >gi|218885645|ref|YP_002434966.1| preprotein translocase subunit SecD [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756599|gb|ACL07498.1| protein-export membrane protein SecD [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 532 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 183/535 (34%), Positives = 282/535 (52%), Gaps = 22/535 (4%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + + G LP+ LP +P + ISLGLDL GG HL L VD D Sbjct: 6 RWRLAVVLAVLLFGAAYVLPS-LPGIKSSPLGRFLPDSAISLGLDLMGGIHLTLGVDVDK 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQI-QNKITLSFADSRFKENIADKVTLFLQGVN 123 V L ++R+ +++ + V R + ++I A + ++ + + + + Sbjct: 65 AVENSLTQMGQDIRTSAREKDVFVLRPRVLPGDRIEFVLAKAEQRDVLGELLAKQFHQL- 123 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + + A+EQ+++ IR RIDQ G++E I++ Sbjct: 124 -----SVAAPQTTDDGQLRYVATMKPEYRKNISDMALEQAVKTIRNRIDQFGVAEPDIRK 178 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG----- 238 +RI IQLPG D R Q++G TA + FH V + + G+ Sbjct: 179 QQDNRIQIQLPGLHDTQRAIQIIGQTAHLEFHIVRDDVDAEKAARGILPPGTEVRPMIRR 238 Query: 239 --------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +V+ + ++G ++ A F ++ V ++F+ GA F +T++N+ Sbjct: 239 GADGSQAETPVVVDKEAVLTGEYVADARPGF-DNFNQAYVMLTFNSRGAAMFERITQENV 297 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 K LA+VLDG+V +APVI + I G+A I+G F+ A LA +LRAGSLP ++++EER Sbjct: 298 RKRLAIVLDGKVYSAPVIQEKIGGGRASITGKFSTAEAQDLAIVLRAGSLPAPVSVLEER 357 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG LG +SI KG A V G +++FM+V YG GL+AD + V+L LA ++ GA Sbjct: 358 TVGPSLGQESIDKGILAAVVGGAAVMIFMVVYYGVSGLIADVMLCFTVLLILAGMAAFGA 417 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP +AGIVL +G+AVD+N+L+ ERIREE RK +V ++ GF RA I DSN+T Sbjct: 418 TLTLPGLAGIVLTLGMAVDANVLIYERIREELRKGHTVLSAIHEGFDRATLAITDSNLTT 477 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +IA+ +L+ FG G VRGFA+T+ L I+ SMFTAI + R + K + I Sbjct: 478 IIASAILYQFGTGPVRGFAVTLSLGIIASMFTAIFVSRVVFQAWKGGSGDKRLSI 532 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 103/239 (43%), Gaps = 5/239 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + VR L + G + EK R S A+ + L +V + + Sbjct: 290 ERITQENVRKRLAIVLDGKVYSAPVIQEKIGGGRASITGKFSTAEAQDLAIVLRAGSLPA 349 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 P+S ++ + GP + +E I KGI+ ++ A++I++ + + L A L + Sbjct: 350 PVSVLEERTV-GPSLGQESIDKGILAAVVGGAAVMIFMVVYYGVS-GLIADVMLCFTVLL 407 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 L A FG L +A ++ +G +V+ V++Y+R+R+ ++ + I + + Sbjct: 408 ILAGMAAFGATLTLPGLAGIVLTLGMAVDANVLIYERIREELR---KGHTVLSAIHEGFD 464 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 +++ I+ + +G + FA+ ++ GI+ + ++IF++ + Sbjct: 465 RATLAITDSNLTTIIASAILYQFGTGPVRGFAVTLSLGIIASMFTAIFVSRVVFQAWKG 523 >gi|149186992|ref|ZP_01865300.1| preprotein translocase subunit [Erythrobacter sp. SD-21] gi|148829381|gb|EDL47824.1| preprotein translocase subunit [Erythrobacter sp. SD-21] Length = 532 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 181/535 (33%), Positives = 303/535 (56%), Gaps = 18/535 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W ++ I +G L ALP+ + +P +P ++LGLDL GGSH++LE Sbjct: 2 LEFPTWKKVMLWGIAILGALAALPSIAS-LTNNDWPDQLPDPTVNLGLDLAGGSHILLEA 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + L+ + +R+ L++ + I + + ++ D+ + ++ Sbjct: 61 ERSQVAAKRLEDMEEGVRNALRRAEPQRIRIGDVSTEDGALSFLLDDAADIDRARGEIED 120 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + G ++ L + + ++ +D + A+E ++ I R+D++G Sbjct: 121 LMAGTGP-----VREWDLQVVDGQRFVLTPTEAGLDNAVDAAMEGALRTIGIRVDELGTR 175 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF----- 232 E TI R G RI++Q+PG QDP +L++LLG TA++ F V + + + G Sbjct: 176 EPTILRQGDTRIVVQVPGLQDPDQLKELLGKTAQLEFKLVERDATAEEVQRGFVPGGEVY 235 Query: 233 ----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 G +V+ I G L GA FD +T++PVV I+F+ G RRF +T Sbjct: 236 PYADTETYQGTGVVVQRLGGIDGETLTGAVQTFDSQTNEPVVSITFNPEGGRRFATMTTK 295 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 G+ A++LD V++APV+ + I +G++QISG+FT E+A LA LR+G+LP+ L +VE Sbjct: 296 YTGRQFAIILDDEVISAPVMREPIANGQSQISGSFTTESANELAIQLRSGALPVDLTVVE 355 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER VG DLG+DSI +G A+ G +L+++ MIV YG++G+ A ++ LNV++ L ++++L Sbjct: 356 ERTVGPDLGADSIKQGLLAMGIGTLLVMVLMIVTYGRFGIYATVALVLNVMMLLGIMAML 415 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GATLTLP IAG VL IG AVD+N+LVNERIREE ++ + V +++ G+ A I+D+N+ Sbjct: 416 GATLTLPGIAGFVLTIGAAVDANVLVNERIREERKRGRRVMAAVENGYKEASRAIYDANV 475 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 T IA V+LF FG G ++GFA+ + + + S+FTA+ + R + +R + + Sbjct: 476 TNFIAGVLLFQFGSGPIKGFAVVLVVGLFTSVFTAVPLTRMWVAGWLRKARPSDL 530 Score = 137 bits (345), Expect = 7e-30, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 10/249 (4%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 R L IS + + + ++ Sbjct: 288 RFATMTTKYTGRQFAIILDDEVISAPVMREPIANGQSQISGSFTTESANELAIQLRSGAL 347 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + + VGP + + I++G++ + I + +++ + + + F + A L+L+ Sbjct: 348 PVDLTVVEER--TVGPDLGADSIKQGLLAMGIGTLLVMVLMIVTYG-RFGIYATVALVLN 404 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + LG A+ G L +A + IG +V+ V+V +R+R+ K ++ Sbjct: 405 VMMLLGIMAMLGATLTLPGIAGFVLTIGAAVDANVLVNERIREERKRGRR---VMAAVEN 461 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 E ++ FI+ + + +G I FA+ + G+ +S+F A P+ Sbjct: 462 GYKEASRAIYDANVTNFIAGVLLFQFGSGPIKGFAVVLVVGL----FTSVFTAVPLTRMW 517 Query: 824 YDWRAKNAR 832 + AR Sbjct: 518 VAGWLRKAR 526 >gi|103487199|ref|YP_616760.1| preprotein translocase subunit SecD [Sphingopyxis alaskensis RB2256] gi|98977276|gb|ABF53427.1| protein-export membrane protein SecD [Sphingopyxis alaskensis RB2256] Length = 537 Score = 229 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 186/535 (34%), Positives = 307/535 (57%), Gaps = 19/535 (3%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W I S+I +G+L A+P+FLP + P ++LGLDL GGSHL+LE D + Sbjct: 5 PRWKTIGISIILLLGVLFAIPSFLPPKAFESLPGFAQAK-VNLGLDLAGGSHLLLEADIN 63 Query: 64 DFVNGFLQMYSDELRSFLKKE-----GIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 D L +R+ ++ + I + + +I+ D+ + +++ Sbjct: 64 DLRKTQLTNMEKTVRTAMRGQSGPDDDIAIGELSTTGGRISFLVRDAAKLDAARERL--- 120 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + + I + + Q +++A++ + +II +R++ +G E Sbjct: 121 FSETQGAGLTGQRDWNIDVVDSTRIVMSPTSAGQTQAVANAMDTARDIIDKRVNALGTRE 180 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233 TI R G+ RI++Q+PG QDP+ L++L+G TA++ F V N G + Sbjct: 181 PTIIREGADRIVVQVPGLQDPAALKELIGKTARLEFRMVDANADPAEAAAGRVPVGSEIV 240 Query: 234 -----RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + ++ +V ISG L A ++DP+T +PVV I FD G+ F +VT Sbjct: 241 PYAEGEGNGAAFEVLRRQVMISGEQLINAQQSYDPQTSEPVVSIRFDSAGSSTFAKVTAQ 300 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 N+GK A+VLDG+VL+AP IN+ I G AQISG+F++ +A LA LR+G+LP+K+ +VE Sbjct: 301 NVGKRFAMVLDGKVLSAPSINEPILGGSAQISGSFSVASANNLAISLRSGALPVKMTVVE 360 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER V +LG+DSI KG A + V ++ FMI++YG++G+ A+ ++ N+ L +A+++ Sbjct: 361 ERTVTPELGADSIRKGAIAGIIATVAVLAFMIIVYGRFGIYANVALIFNIGLIIAIMAAF 420 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLTLP IAG VL IG AVD+N+L+NERIREE ++ + VF ++++G+S A IFD+NI Sbjct: 421 NATLTLPGIAGFVLTIGAAVDANVLINERIREELKRGRRVFQAVELGYSEASRAIFDANI 480 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 T +IA ++F+FG G ++GFA+ + + I+ S+FTA+++ R + + S+ Sbjct: 481 TNVIAAGLMFWFGSGPIKGFAVVLTIGIITSVFTAVTVTRLFAARWLHKTRPASL 535 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 4/182 (2%) Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 T+ V P++ + IRKG + II+ +A+L ++ I + F + A LI +I Sbjct: 355 KMTVVEERTVTPELGADSIRKGAIAGIIATVAVLAFMIIVYG-RFGIYANVALIFNIGLI 413 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + A F L +A + IG +V+ V++ +R+R+ +K ++ +E Sbjct: 414 IAIMAAFNATLTLPGIAGFVLTIGAAVDANVLINERIREELKRGRR---VFQAVELGYSE 470 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ I+ M +G I FA+ + GI+ + +++ + Sbjct: 471 ASRAIFDANITNVIAAGLMFWFGSGPIKGFAVVLTIGIITSVFTAVTVTRLFAARWLHKT 530 Query: 828 AK 829 Sbjct: 531 RP 532 >gi|283850331|ref|ZP_06367620.1| protein-export membrane protein SecD [Desulfovibrio sp. FW1012B] gi|283574357|gb|EFC22328.1| protein-export membrane protein SecD [Desulfovibrio sp. FW1012B] Length = 534 Score = 229 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 187/533 (35%), Positives = 286/533 (53%), Gaps = 25/533 (4%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 N W ++ S++ +GL+ LP+ +P + I+LGLDL+GG HL L VD Sbjct: 4 NLRWRLVCISLVAFLGLIYMLPSVGSVKQ-TFLGKFLPDDVINLGLDLKGGIHLTLGVDV 62 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIG--VFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + L ++R K+EGI ++T ++ + D ++ Q Sbjct: 63 DKALANSLAQMGRDIRDQAKEEGIVLQRPESTADGRQLTFILNTPDKRQELDDLLSRHFQ 122 Query: 121 -GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 V + + + S ++Q+++ IR RID+ G++E Sbjct: 123 VLVVDGVESAADGKYVYK-------LSFSPRYKADQARMTVDQAVKTIRNRIDEFGVAEP 175 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG- 238 I++ +RI IQLPG DP R +L+G TA + F V N G+ + Sbjct: 176 DIRKQADNRIQIQLPGLHDPERAIKLIGKTAHLEFKVVDDNADLDKAQKGLVPPGEELSV 235 Query: 239 ------------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 ++ + ++G ++ A A F T++ V +SF GAR+F VT Sbjct: 236 LRHRNPDGSYLERPIVLRSEAVMTGENIADARAGF-DNTNQAYVGLSFTPSGARQFERVT 294 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 +N+ K LA+VLDG+V +AP I + I G+A I+G F+ E A LA +LRAG+LP + I Sbjct: 295 GENVKKRLAIVLDGKVYSAPTIQEKISGGRASITGRFSTEEARDLAIVLRAGALPAPVTI 354 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 +E+R+VG LG +SI KG + V G VL+V FMI+ YG G VAD ++ N++L +A L+ Sbjct: 355 LEQRSVGPSLGQESIEKGVYSAVVGGVLVVAFMILYYGVAGAVADMALVFNLMLIMAGLA 414 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 GATLTLP IAGI+L IG+AVD+N+++ ERIREE R+ + ++D G+SRA TI D+ Sbjct: 415 GFGATLTLPGIAGIILTIGMAVDANVIIFERIREEVRRGLTARSAVDTGYSRATLTILDA 474 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519 N+T +IA VL+ FG G +RGFA+T+ L I+ SMFTAI R + + + Sbjct: 475 NVTTVIAAAVLYQFGTGPIRGFAVTLILGIVASMFTAIFFTRFLFDLWLSKRP 527 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 78/174 (44%), Gaps = 4/174 (2%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VGP + +E I KG+ ++ + ++ ++ + + A L+ ++ + A Sbjct: 357 QRSVGPSLGQESIEKGVYSAVVGGVLVVAFMILYYGV-AGAVADMALVFNLMLIMAGLAG 415 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 FG L +A ++ IG +V+ V++++R+R+ ++ ++ R +D + + Sbjct: 416 FGATLTLPGIAGIILTIGMAVDANVIIFERIREEVR---RGLTARSAVDTGYSRATLTIL 472 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ I+ + +G I FA+ + GIV + ++IF + R Sbjct: 473 DANVTTVIAAAVLYQFGTGPIRGFAVTLILGIVASMFTAIFFTRFLFDLWLSKR 526 >gi|326319353|ref|YP_004237025.1| protein-export membrane protein SecD [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376189|gb|ADX48458.1| protein-export membrane protein SecD [Acidovorax avenae subsp. avenae ATCC 19860] Length = 632 Score = 229 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 171/514 (33%), Positives = 282/514 (54%), Gaps = 21/514 (4%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 I N + +S + +A+ + LGLDLRGG H +L+VD + + ++ +LR+ Sbjct: 104 YIVALNLVSRSP--AWLTALHAQPVYLGLDLRGGVHFMLQVDMQAALTKKAESFAGDLRT 161 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 F++ I + + I + D + ++ + + + D + ++ Sbjct: 162 FMRDRNIRHGGISRDGQTIEVRLRDEAAATATRNLISDQFPDLVATSSPDGQGVIV---- 217 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + + +V A++Q+M + RI+++G++E IQ+ G+ RI++QLPG QD Sbjct: 218 ----RATIKPEALRKVQDQALKQNMTTLHNRINELGVAEPVIQQQGTDRIVVQLPGVQDT 273 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDSDGNQYLVEDKVEISGI 252 ++ + +LG TA + V + +G G D +G +V+ +V ++G Sbjct: 274 AKAKDILGRTATLEVRMVDESTEARGAERGSGPVPFGSERYPDRNGQFVIVKKQVILTGE 333 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308 +L A FD +T +P V+++ D GAR F ++TR+NIGK + G V+TAPVI Sbjct: 334 NLTDAQPGFDGQTQEPTVNLTLDAKGARIFKDITRENIGKRMAIVLFEKGKGEVVTAPVI 393 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 I G+ QISG T A + +LRAGSL + I+EE +G LG+D+I +G ++ Sbjct: 394 RSEIGGGRVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEFTIGPSLGADNISRGIHSV 453 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 V G+V I +FM V Y +G+ + ++ +NV++ +A+LS+L ATLTLP IA + L +G+A+ Sbjct: 454 VWGMVAIAVFMCVYYALFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAI 513 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 DSN+L+NERIREE R + ++ G+ RA++TI DSN+T LIA + L FG G VRGF Sbjct: 514 DSNVLINERIREELRAGVAPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGSGPVRGF 573 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 A+ L IL SMF+A+ R ++ KK Sbjct: 574 AVVHCLGILTSMFSAVFFSRGLVNLWYGRKKKLK 607 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 87/212 (41%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I +GI V+ +A+ Sbjct: 402 VQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEFTIGPSLGADNISRGIHSVVWGMVAIA 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + + F + + L +++ + ++ L +AA+ +G +++ V++ Sbjct: 462 VFMCVYYAL-FGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ ++ + I + +++ I+ L + +G + FA+ Sbjct: 521 ERIREELRA---GVAPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++F + ++ Y + K + Sbjct: 578 CLGILTSMFSAVFFSRGLVNLWYGRKKKLKSV 609 >gi|91763286|ref|ZP_01265250.1| preprotein translocase chain secF [Candidatus Pelagibacter ubique HTCC1002] gi|91717699|gb|EAS84350.1| preprotein translocase chain secF [Candidatus Pelagibacter ubique HTCC1002] Length = 295 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 106/294 (36%), Positives = 181/294 (61%), Gaps = 5/294 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSVVRSNL 598 I F + IS+ I S+ LLF GLN+G+DFKGG + + + ++ ++++ +R + Sbjct: 2 INFNKFYKLFNLISLSLVIASVLLLFFKGLNFGVDFKGGTLIELRSNDKNINVTSLRQSF 61 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 + +GD + + F E +FL++++ + + A + + + + + E VG Sbjct: 62 NKMNLGDFNIKKFGNENDFLIKIEKKDTSANAIEVIKKDLTSSL---GSSFNFRRVENVG 118 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 PK+S EL++ GI+ + +S AML YIWIRF+W F+LGAI L D+ TLG F+LF +E Sbjct: 119 PKVSSELLKSGIIAIALSLAAMLFYIWIRFEWQFSLGAILALFHDVIITLGLFSLFSLEI 178 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 NL+ VAAVLT++GYS+ND VV+YDR+R+N++ + + I +L + SINETL R++ TS Sbjct: 179 NLSIVAAVLTIVGYSMNDTVVIYDRVRENLRKF-SDIKIYELTNISINETLSRTIITSAT 237 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++++ + ++GG ++ F++ M G+V SSI+IA PIL+ + + + Sbjct: 238 TLLALVSIYLFGGEILKGFSLAMIMGVVFGTYSSIYIANPILVKLRVSQKTILK 291 >gi|313114095|ref|ZP_07799647.1| protein-export membrane protein SecF [Faecalibacterium cf. prausnitzii KLE1255] gi|310623504|gb|EFQ06907.1| protein-export membrane protein SecF [Faecalibacterium cf. prausnitzii KLE1255] Length = 778 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 153/749 (20%), Positives = 286/749 (38%), Gaps = 59/749 (7%) Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188 K + +++ ++ +E + +I R+ + +++ + + Sbjct: 42 GAKDIRFGVDIKGGVNVTFVPSDGYDATEEQLEAAQLVIENRLVALNVTDYELYVDNNSD 101 Query: 189 ILIQLPGEQ------DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 LI Q DP +GTTA ++F + + + + + Sbjct: 102 SLILEFPWQSGETDFDPEAAIDEIGTTAYLTFREGSSADGELILDGSMIESAAAQYGPVS 161 Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302 E + K D + A + I L Sbjct: 162 NGGASE-------------YFVSLKFTDDGAKAFGDATTKLAASGGTISIWLDDENVSTA 208 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 I + S FT E +A + +G+LP L + V LG +S+ Sbjct: 209 TVNTAITDGSAIITSSASNPFTQEQVVKMARQINSGALPFALTVDSYSTVSPSLGENSLS 268 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-----ATLTLPSI 417 A + LIV+FM +LY G +A ++ V TLA +S T+TLP I Sbjct: 269 AMVLAGLIAFALIVVFMTMLYRLPGFLACIALAGQVAATLAFVSGYFPAFESFTMTLPGI 328 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGI+L IG+ VD+N++ ERI+EE + +S+ +L GF+R + I D N+T +I +VL Sbjct: 329 AGIILAIGMGVDANVITAERIKEELKNGKSLDGALKSGFARGLTPIVDGNVTIVIVAIVL 388 Query: 478 FFFGGGAV----------------------RGFAITMGLSILISMFTAISIVRAMMIFII 515 G + F T+ +L++ + R M+ Sbjct: 389 MGAFGPSDGMFAKALHFVFFAFGPSTAGTIYAFGYTLLTGVLLNFVFGVFATRVMIRGAA 448 Query: 516 RYKKMKSID-INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574 K +++ + I F+ R + IS + G++ + Sbjct: 449 SIKALRNPWLYGAEKPGKEKAEKKPIDFVGLRKRFLTISSCLMAAIVLCAVVLGVHLDTE 508 Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFLVRLQYQPGDSVAQT 632 F GG + + +S V+ S + PG T Sbjct: 509 FTGGAMITLSYEGSFTMSDVQKVASSALENNGLTLQTGENVATGDQTLKISMPGTETVTT 568 Query: 633 RVLEMVKKKITE--IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689 + + + E + V + + ++K +V V+ + + +L+YI +RFK Sbjct: 569 EQVAKLLDSLNESCPDNNFEQLSLSNVSAAMGTKFLQKSLVAVVFALVLILLYIALRFKN 628 Query: 690 ---WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 + A+ L+ D+ G F L + +AA+LT++GYS+ND VVVYDR+R+ Sbjct: 629 IGGLTGGMMAVLALVNDLMVVFGTFVLLRTALDGNFIAAMLTILGYSINDTVVVYDRIRE 688 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV----WGGSVIGSFAIPMA 802 N L SF +L++ S+N++ R++ T++ +++ M + +G I +FA P+ Sbjct: 689 NRTLMGKKASFEELVNHSVNQSARRTLITTITTVMALGVMCIVAKLYGLDSIFTFAFPLM 748 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G++ +S+ ++ + + + K Sbjct: 749 MGMISGVYTSLCVSTSAWVLWSERKPKTK 777 >gi|328543823|ref|YP_004303932.1| Protein translocase subunit secF / protein translocase subunit secD [polymorphum gilvum SL003B-26A1] gi|326413567|gb|ADZ70630.1| Protein translocase subunit secF / protein translocase subunit secD [Polymorphum gilvum SL003B-26A1] Length = 318 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 127/296 (42%), Positives = 186/296 (62%), Gaps = 4/296 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 LIPD ++FM R + S L ++ S+ L FT GLNYGIDFKGG + + + P D+ Sbjct: 5 RLIPDNTKLRFMWLRKYSFPFSALVAVASLALFFTVGLNYGIDFKGGTLIEMKTDGPADI 64 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 VRS L +L +G++ Q F L+R++ Q G +AQ V+ ++ V Sbjct: 65 GAVRSRLGALNLGEVQVQEFGAPDEVLIRVEQQEGGELAQQAVIATIRTAFEGEVEF--- 121 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + EIVGP++S EL R G +GV + +A+L YIW RF+W FA+GAI T D+ T+G F Sbjct: 122 RRVEIVGPRVSGELARAGSIGVAAALVAILFYIWFRFEWQFAIGAILTTFNDVLVTVGLF 181 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 L ++F+L+++AAVLT+IGYS+ND VVVYDR+R+N++ Y +S DL+D+SINETL R Sbjct: 182 VLLQLDFSLSSIAAVLTIIGYSLNDTVVVYDRIRENLRRY-KKLSLPDLLDRSINETLAR 240 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + TS+ +++ + ++GG VI SF + M FGIV+ SSIF+AAP L+ Sbjct: 241 TTMTSVTTLLALFALYIFGGEVIRSFTLAMIFGIVIGTYSSIFLAAPFLILFNLRS 296 >gi|313895587|ref|ZP_07829143.1| export membrane protein SecF [Selenomonas sp. oral taxon 137 str. F0430] gi|312975713|gb|EFR41172.1| export membrane protein SecF [Selenomonas sp. oral taxon 137 str. F0430] Length = 308 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 1/295 (0%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 R IS+L I + G N+GIDF GG + + PV L+ +R+ Sbjct: 1 MPKFDIAGHRRIFFLISLLMIIPGFICMGVRGFNFGIDFTGGTIIDLHFEHPVTLADIRT 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 +L + + + Q E + + V +T+ V T+ E Sbjct: 61 SLAKYDLDNSTIQLSGTESGVESSENAMIRTVDLEENQRKEVMAALTQDVGPYTVLREEK 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG I ELI ++ ++IS +++Y+ RF+W F + A+ L+ DI L F+L Sbjct: 121 VGATIGGELITNAVLALVISWALIILYVAYRFEWRFGVSAVLALVHDIIIVLAVFSLTQR 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775 + + + +AA+LT++GYS+ND +V++DR+R+N+KL+ +L+++SI +TL RS+YT Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDVDELVNRSIYQTLTRSLYT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + + +GG FA + G V SSIFIA+ I + + + + Sbjct: 241 VFTVLFTTAALYWFGGETTKDFAFALLVGFAVGCYSSIFIASQIWIELRNRTERR 295 >gi|319796463|ref|YP_004158103.1| protein-export membrane protein secd [Variovorax paradoxus EPS] gi|315598926|gb|ADU39992.1| protein-export membrane protein SecD [Variovorax paradoxus EPS] Length = 651 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 151/519 (29%), Positives = 270/519 (52%), Gaps = 27/519 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L+ P++L + LGLDLRGG +L+VD ++ + + Sbjct: 126 VVALNLVSRSPHWLTALHA---------FPMYLGLDLRGGVDFLLQVDMRGVLDKKAESF 176 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ + + ++ + + ++ D+ E + + D Sbjct: 177 AGDIRAGLRDKKVRGSAVNRNGQTVEITLRDAASLEIARRMLQDQM--------PDLSTV 228 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 TE I + + A++Q++ + RI+++G++E IQ+ G RI++QL Sbjct: 229 ESQQGTESRIVASIKPEAARRFQDAALKQNVTTLHNRINELGVAEPVIQQQGLDRIVVQL 288 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDK 246 PG QDP++ + ++G TA + V + + G + D G +V+ + Sbjct: 289 PGMQDPAQAKTIIGRTATLEMRLVDESTEGRAAEQGTGPVPFGSEKFLDRSGRAVIVKKQ 348 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VL 303 V ++G +L A F+ +T++P VD++ D G +V+ +N K +A+++ + + Sbjct: 349 VLVTGENLTDAQPGFEQQTNQPKVDLTMDSKGGNIMRQVSIENYKKRMAMLIFEKGKGEV 408 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 + Q+SG T+ A LA +LRAGSL + I++ER +G G+++I K Sbjct: 409 LTAPSINGELGNRFQVSGAMTVSEANDLALLLRAGSLAAPMEIIQERTIGPTQGAENIKK 468 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G +++ G I++FM + Y +G+ + ++ +N++L +A+LS+L ATLTLP IA + L Sbjct: 469 GFDSVMYGFAAIMVFMCLYYALFGIFSSIALAVNLMLLVAILSILQATLTLPGIAAMALA 528 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 IG+A+DSN+L+NER+REE R S ++ G+ RA+ TI DSNIT LIA + L FG G Sbjct: 529 IGVAIDSNVLINERVREELRNGASPQAAIHAGYERAWGTILDSNITTLIAGIALLAFGSG 588 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 VRGFA+ + I+ SMF+A+ R ++ F KK Sbjct: 589 PVRGFAVVHCIGIVTSMFSAVFFSRGLVNFWYGQKKKLK 627 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 88/219 (40%), Gaps = 4/219 (1%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 L G + + + I +GP E I+KG V+ Sbjct: 415 NGELGNRFQVSGAMTVSEANDLALLLRAGSLAAPMEIIQERTIGPTQGAENIKKGFDSVM 474 Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 A+++++ + + F + + L +++ + ++ L +AA+ IG ++ Sbjct: 475 YGFAAIMVFMCLYYAL-FGIFSSIALAVNLMLLVAILSILQATLTLPGIAAMALAIGVAI 533 Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 + V++ +R+R+ ++ S + I G + +++ I+ + + +G + Sbjct: 534 DSNVLINERVREELR---NGASPQAAIHAGYERAWGTILDSNITTLIAGIALLAFGSGPV 590 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 FA+ GIV + S++F + ++ F Y + K + Sbjct: 591 RGFAVVHCIGIVTSMFSAVFFSRGLVNFWYGQKKKLKSV 629 >gi|260575193|ref|ZP_05843193.1| protein-export membrane protein SecD [Rhodobacter sp. SW2] gi|259022453|gb|EEW25749.1| protein-export membrane protein SecD [Rhodobacter sp. SW2] Length = 555 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 201/554 (36%), Positives = 304/554 (54%), Gaps = 33/554 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQ------------------------SMLDRFP 36 + W ++ IC +G+ ALPN + L ++P Sbjct: 2 LHTPLWKRLIIWGICVLGMFYALPNLFYTRVETHNDAAKMVEAAGGVATPEQEAALAQWP 61 Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96 +P ++LGLDLRGG+HL+ EV D + ++R L++ V ++R+ + Sbjct: 62 GFLPSGLVNLGLDLRGGAHLLAEVKVADVYKSRIDAMWPDVRDALREVRDQVGNVRRQPS 121 Query: 97 K---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153 + +S V + V S + + + + LS+ Sbjct: 122 VPGVLRVSVEKPEAIAEAVKAVKALARPVVSLTGIGSNDIEVT-AEGDAVVVQLSEAERV 180 Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 S I+QS+EIIR+R+D++G E TIQR G+ RILIQ+PG + L+ L+GTTAK++ Sbjct: 181 ATDSRTIQQSLEIIRRRVDEVGTREPTIQRQGTDRILIQVPGIGSAAELKALIGTTAKLT 240 Query: 214 FHKVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269 FH V+ + + G R D G Y+VE+ ++G L A +FD + +P Sbjct: 241 FHPVVSSTTDAAANPGPRNLLLPSMDEKGLFYIVEETPVVTGEELVDAQPDFDQNS-RPA 299 Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V F+ GAR F + T +NIG P A+VLD V++APVI IP G I+GNF+IE + Sbjct: 300 VKFRFNPTGARAFGDYTANNIGSPFAIVLDDEVISAPVIQSHIPGGSGIITGNFSIEEST 359 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389 LA +LRAG+LP ++ +EER +G +LG DSI G A + +V +VLFM YG +G+ Sbjct: 360 KLAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGKVAALVAMVAVVLFMWASYGLFGVF 419 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ +N+ L LS++G TLTLP IAGIVL IG+AVD+N+LV ERIREE R ++ Sbjct: 420 ANVALAINMALIFGALSMVGGTLTLPGIAGIVLTIGMAVDANVLVFERIREELRGLKNPA 479 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 ++++G+ RA S I D+N T I VVLF G G VRGFAIT+G+ I+ S+FTA+ + RA Sbjct: 480 RAIEIGYERALSAIIDANFTTFITAVVLFMVGAGPVRGFAITLGIGIITSVFTAVFVTRA 539 Query: 510 MMIFIIRYKKMKSI 523 ++ ++ K+I Sbjct: 540 IIEIWFAMRRPKTI 553 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 92/208 (44%), Gaps = 4/208 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 G+ + V + + T +GP++ ++ I G V +++ +A+++ Sbjct: 348 IITGNFSIEESTKLAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGKVAALVAMVAVVL 407 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++W + F + A L +++ G ++ G L +A ++ IG +V+ V+V++ Sbjct: 408 FMWASYGL-FGVFANVALAINMALIFGALSMVGGTLTLPGIAGIVLTIGMAVDANVLVFE 466 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ ++ + I+ L + + FI+ + + + G + FAI + Sbjct: 467 RIREELRGLK---NPARAIEIGYERALSAIIDANFTTFITAVVLFMVGAGPVRGFAITLG 523 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830 GI+ + +++F+ I+ + R Sbjct: 524 IGIITSVFTAVFVTRAIIEIWFAMRRPK 551 >gi|86138468|ref|ZP_01057042.1| protein-export membrane protein SecF [Roseobacter sp. MED193] gi|85824993|gb|EAQ45194.1| protein-export membrane protein SecF [Roseobacter sp. MED193] Length = 322 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 176/305 (57%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P + F +GIS L + + GLN+GIDF+GG + + Sbjct: 1 MRLRLVPQETSFDFFSKWKIWLGISALMMVVGLVSFGLQGLNFGIDFRGGTTVRTESTTA 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642 +D+ R + +++GDIS ++R+Q Q V+E +++ + Sbjct: 61 IDVGQYREAIAPMELGDISITEVFDPTFEEDQHVAMIRIQAQASGEAISGEVIEELQQAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + P + E VGPK+S EL++ I+ V+++ A+LIYIW+RF+W FALGA+ L+ Sbjct: 121 DAVAPGIKFVSVESVGPKVSGELVQTAILAVVLAIGAVLIYIWLRFEWQFALGAVVALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I+F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y ++++ Sbjct: 181 DVVLTIGIFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKK-DLSEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINETL R+V TS+ ++++ + V GG VI F M +G++V SS+F+A+ ILL+ Sbjct: 240 LSINETLSRTVMTSVTTLLALVSLYVLGGDVIRGFVFAMIWGVIVGTYSSVFVASTILLW 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|304436593|ref|ZP_07396562.1| protein-export membrane protein SecF [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370289|gb|EFM23945.1| protein-export membrane protein SecF [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 305 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 1/296 (0%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 R IS+L I I + G N+GIDF GG + + +PV L VRS Sbjct: 1 MPKFDIAGHRKIWFLISLLVIIPGIICMCVRGFNFGIDFTGGTIMDLRFEQPVTLQGVRS 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 +L + + Q E + + V +T+ V T+ E Sbjct: 61 SLAKYDLDGSTIQFAGAEAGIDASENVMIRTIDLEENQRKEVMASLTQDVGPYTVLREEK 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG I ELI ++ ++IS +++Y+ RF+W F + A+ LI DI + F+ Sbjct: 121 VGATIGGELITNAVLALVISWALIILYVAYRFEWRFGVSAVLALIHDIIIVMAVFSFTQR 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775 + + + +AA+LT++GYS+ND +V++DR+R+N+KL+ +L+++SI +TL RS+YT Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDVNELVNRSIYQTLTRSLYT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + +GG FA + G V SSIFIA+ + + + + Sbjct: 241 VFTVLFTTFALYWFGGETTKDFAFALLIGFAVGCYSSIFIASQLWIELRNRTEHRR 296 >gi|332974532|gb|EGK11452.1| protein-export membrane protein SecD [Kingella kingae ATCC 23330] Length = 618 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 164/507 (32%), Positives = 283/507 (55%), Gaps = 25/507 (4%) Query: 29 QSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85 Q+ + P + K + LGLDLRGG H ++VD ++ L Y+ ++R L+++ Sbjct: 102 QNQIANSPEWLEKIGARPMFLGLDLRGGVHFTMQVDMKAALDKTLDRYAGDIRRTLRQQK 161 Query: 86 IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 I ++R+ N + + F D+ + ++ ++G V +++ Sbjct: 162 IRTGTVRKTGNSLVVPFQDAADVQKAYPELQKLMEGAQ------------VAVDGNNVTV 209 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 L + + Q+ + A++Q++ + R++++G +E IQ+ G+ RI++QLPG D ++ + + Sbjct: 210 TLPEALLTQIRNDAVKQNINTLHNRVNELGTAEPVIQQAGADRIVVQLPGMTDTAKAKDI 269 Query: 206 LGTTAKMSFHKVLP------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 +G TA + V G L +++ N++LV +VE++G ++N A A Sbjct: 270 IGRTATLEVRMVSTDASLFGQAQSGNVPDGYELLSNNEQNRFLVSKQVELTGDNINSAQA 329 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSG 315 F+ KT +P V++S D G F ++T N GK +A+VL + V+TAP IN AI G Sbjct: 330 GFEDKTGRPTVNLSLDGAGTSIFADLTTANKGKIMAMVLIDQGKSEVVTAPRINDAITGG 389 Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375 + QI+G + A +A +LRAGSL + IVEER +G LG+++I KG + V G + Sbjct: 390 RVQITGMASPAEANDVALLLRAGSLAAPMEIVEERTIGPSLGAENITKGINSTVWGFAAV 449 Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435 +FM+ Y +G+ + ++ N++ A+LS L ATLTLP IA + L +G+A+DSN+L+N Sbjct: 450 AVFMMFYYRLFGVFSTVALSANLLFLFAILSALQATLTLPGIAAMALTLGMAIDSNVLIN 509 Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495 ERIREE R + ++ G+ A+ TI DSN+T+LIA + L FG G VRGFAI L Sbjct: 510 ERIREELRDGKKPQAAIKEGYDHAWDTIVDSNLTSLIAGIALLIFGSGPVRGFAIVHCLG 569 Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKS 522 I+ S+++++ + RA++ ++ Sbjct: 570 IITSIYSSVVVSRALVNLWYGSRRKLK 596 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 90/245 (36%), Gaps = 4/245 (1%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + + + + Q G + + + + Sbjct: 358 ANKGKIMAMVLIDQGKSEVVTAPRINDAITGGRVQITGMASPAEANDVALLLRAGSLAAP 417 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + E I KGI + A+ +++ ++ F + + L ++ Sbjct: 418 MEIVEERTIGPSLGAENITKGINSTVWGFAAVAVFMMFYYRL-FGVFSTVALSANLLFLF 476 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + L +AA+ +G +++ V++ +R+R+ ++ + I + + Sbjct: 477 AILSALQATLTLPGIAAMALTLGMAIDSNVLINERIREELRDGKK---PQAAIKEGYDHA 533 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V +++ + I+ + + ++G + FAI GI+ + SS+ ++ ++ Y R Sbjct: 534 WDTIVDSNLTSLIAGIALLIFGSGPVRGFAIVHCLGIITSIYSSVVVSRALVNLWYGSRR 593 Query: 829 KNARI 833 K + Sbjct: 594 KLKHL 598 >gi|320528878|ref|ZP_08029970.1| protein-export membrane protein SecF [Selenomonas artemidis F0399] gi|320138508|gb|EFW30398.1| protein-export membrane protein SecF [Selenomonas artemidis F0399] Length = 308 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 81/295 (27%), Positives = 142/295 (48%), Gaps = 1/295 (0%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 R IS++ I + G N+GIDF GG + + PV L+ +R+ Sbjct: 1 MPKFDIAGHRRIFFLISLILIIPGFICMGVRGFNFGIDFTGGTIIDLHFEHPVTLADIRT 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 +L + + + Q E + + V + + V T+ E Sbjct: 61 SLAKYDLDNSTIQLSGTESGVESSENAMIRTVDLEENQRKEVMAALAQDVGPYTVLREEK 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG I ELI ++ ++IS +++Y+ RF+W F + A+ L+ DI L F+L Sbjct: 121 VGATIGGELITNAVLALVISWALIILYVAYRFEWRFGVSAVLALVHDIIIVLAVFSLTQR 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775 + + + +AA+LT++GYS+ND +V++DR+R+N+KL+ +L+++SI +TL RS+YT Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDVDELVNRSIYQTLTRSLYT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + + +GG FA + G V SSIFIA+ I + + + + Sbjct: 241 VFTVLFTTAALYWFGGETTKDFAFALLVGFAVGCYSSIFIASQIWIELRNRTERR 295 >gi|300690471|ref|YP_003751466.1| SecYEG protein translocase auxillary subunit [Ralstonia solanacearum PSI07] gi|299077531|emb|CBJ50157.1| SecYEG protein translocase auxillary subunit [Ralstonia solanacearum PSI07] Length = 626 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 170/515 (33%), Positives = 272/515 (52%), Gaps = 26/515 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL P +L + LGLDLRGG H +L+VD + + L Sbjct: 109 IVALNLLSGSPRWLTSIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ +GI + + + I + F + + + + Sbjct: 160 AGDIRTQLRDKGIRHNGIERSGSTIAIKFGSPDDADRARSLLADSAR--------ELAFT 211 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + T ++ + +V +A++Q++ + R++++G+SE IQ+ G RI++QL Sbjct: 212 VDKTADGATLTGTFTDAAKKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248 PG QD ++ + ++G TA + PN + G G L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPNATGIPRATDPVPLGDELFTQGRGAPVLLQKQVI 331 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G +N A+A FD H P VDI+ D G R +V+RDNIGK + +VL + + Sbjct: 332 FTGDRINSASAGFDQN-HSPSVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 390 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G T+E+A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 391 VATIQSELGSRFQITGIGTVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 450 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + G I +FM++ Y +GL + ++ +NV L +A+LS+L ATLTLP IA I L +G Sbjct: 451 DSAAYGFAAISVFMVLYYMLFGLFSVVALGVNVFLLIAILSMLQATLTLPGIAAIALALG 510 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NER+REE R S ++ GF RA++TI DSN+T LIA + L FG G V Sbjct: 511 MAIDANVLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFA+ L IL SMF+A+ R+++ KK Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 78/181 (43%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG A+ +++ + + F L ++ L +++ + Sbjct: 429 MEIIEERTIGPSLGADNIKKGFDSAAYGFAAISVFMVLYY-MLFGLFSVVALGVNVFLLI 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ S + I Sbjct: 488 AILSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGASPQMAIAAGFERA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FA+ GI+ + S++F ++ Y + Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604 Query: 829 K 829 K Sbjct: 605 K 605 Score = 37.7 bits (85), Expect = 9.3, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 15/33 (45%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34 R W ++ M IG L LPNF ++ + Sbjct: 3 RYPLWKYLVILMALAIGFLYTLPNFFGEAPAVQ 35 >gi|260887827|ref|ZP_05899090.1| protein-export membrane protein SecF [Selenomonas sputigena ATCC 35185] gi|330838606|ref|YP_004413186.1| protein-export membrane protein SecF [Selenomonas sputigena ATCC 35185] gi|260862433|gb|EEX76933.1| protein-export membrane protein SecF [Selenomonas sputigena ATCC 35185] gi|329746370|gb|AEB99726.1| protein-export membrane protein SecF [Selenomonas sputigena ATCC 35185] Length = 305 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 1/294 (0%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 ++ +S+ + I + T G N GIDF GG + + + V L+ VR Sbjct: 1 MHKFDIVKRTKIWFILSLCVILPGIFSMCTQGFNLGIDFTGGTIIELRFQKEVTLADVRG 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + + + Q N + + V + + + + E Sbjct: 61 VLREYGLDNSTIQFSGDAANAEAAPTVMVRSVDLEEEERKAVMASLKQQLGDYDVLREEK 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG + ELI + + +S + +++Y+ RF++ F + +I L+ DI L F+L Sbjct: 121 VGATMGAELIMNALWALALSWVMIVLYVSYRFEFRFGISSILALVHDILIVLSVFSLTQR 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775 + + VAA+LT++GYS+ND +V++DR+R+N+KL+ +L++ SI +TL RS+YT Sbjct: 181 PIDSSFVAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDINELVNTSIYQTLTRSIYT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + + +GG F+ + G SSIFIA+PI + + ++ K Sbjct: 241 VCTVLFTTFALYWFGGDTTKDFSFALLVGFFAGCYSSIFIASPIWVVLRNFSEK 294 >gi|71083673|ref|YP_266393.1| preprotein translocase subunit SecF [Candidatus Pelagibacter ubique HTCC1062] gi|71062786|gb|AAZ21789.1| preprotein translocase chain secF [Candidatus Pelagibacter ubique HTCC1062] Length = 295 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 105/294 (35%), Positives = 183/294 (62%), Gaps = 5/294 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSVVRSNL 598 I F + IS+ + S+ LLF GLN+G+DFKGG + + + ++ ++++ +R + Sbjct: 2 INFNKFYKLFNLISLSLVVASVLLLFFKGLNFGVDFKGGTLIELRSNDKNINVTSLRQSF 61 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 +++GD + + F E +FL++++ + + A + + + + + E VG Sbjct: 62 NKMKLGDFNIKKFGNENDFLIKIEKKDTSANAIEVIKKDLTSSL---GSSFNFRRVENVG 118 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 PK+S EL++ GI+ + +S AML YIWIRF+W F+LGAI L D+ TLG F+LF +E Sbjct: 119 PKVSSELLKSGIIAIALSLAAMLFYIWIRFEWQFSLGAILALFHDVIITLGLFSLFSLEI 178 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 NL+ VAAVLT++GYS+ND VV+YDR+R+N++ + + I +L + SINETL R++ TS+ Sbjct: 179 NLSIVAAVLTIVGYSMNDTVVIYDRVRENLRKF-SDIKIYELTNISINETLSRTIITSVT 237 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++++ + ++GG ++ F++ M G+V SSI+IA PIL+ + + + Sbjct: 238 TLLALVSIYLFGGEILKGFSLAMIMGVVFGTYSSIYIANPILVKLRVSQKTILK 291 >gi|160945112|ref|ZP_02092338.1| hypothetical protein FAEPRAM212_02631 [Faecalibacterium prausnitzii M21/2] gi|158442843|gb|EDP19848.1| hypothetical protein FAEPRAM212_02631 [Faecalibacterium prausnitzii M21/2] gi|295105642|emb|CBL03186.1| protein-export membrane protein SecF [Faecalibacterium prausnitzii SL3/3] Length = 777 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 153/763 (20%), Positives = 289/763 (37%), Gaps = 59/763 (7%) Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 V V + K + +++ ++ ++ + +I R+ + Sbjct: 28 VAAKYGDVTTTYIKGAKDIRFGVDIKGGVNVTFVPSDGYDATDEQLDAARLVIENRLVAL 87 Query: 175 GISESTIQRLGSHRILIQLPGEQ------DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228 +++ + + LI Q DP Q +GTTA ++F + Sbjct: 88 NVTDYELYVDNNSDSLILEFPWQSGETDFDPESAIQEIGTTAYLTFRE-------GASKD 140 Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 G L S + +G A A + Sbjct: 141 GELILDGSMVESASAQYGAVSNGGSSEYYVALKFTTEGA------KAFGDATTKLAADKG 194 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 +I L I + S FT + +A + +G+LP L++ Sbjct: 195 SISIWLDDENVSTATVNTAITDGQAIITSSASNPFTQDAVVKMARQINSGALPFALSVDS 254 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 V LG +S+ A + LIV+FM VLY G +A ++ V TLA +S Sbjct: 255 YSTVSPSLGENSLGAMVLAGLIAFALIVVFMTVLYRLPGFLACIALAGQVAATLAFVSGY 314 Query: 409 G-----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463 TLTLP IAGI+L IG+ VD+N++ ERI+EE + +S+ +L GF+R + I Sbjct: 315 FPVFESFTLTLPGIAGIILAIGMGVDANVITAERIKEELKNGKSLDGALKSGFARGLTPI 374 Query: 464 FDSNITALIATVVLFFFGGGAV----------------------RGFAITMGLSILISMF 501 D N+T +I +VL G + F T+ +L++ Sbjct: 375 IDGNVTIVIVAIVLMGAFGPSDGLFAKALHFVFFAFGPSTAGTIYAFGYTLLTGVLLNFV 434 Query: 502 TAISIVRAMMIFIIRYKKMKSID-INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560 + R M+ K +++ + + F+ R + S Sbjct: 435 FGVFATRVMIRGAAAIKALRNPWLYGAAKPGQEKAEKKPVDFVSLRKKFLTFSACLMAVI 494 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVL----ANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616 + G++ +F GG + + ++ + LE+ + + +N Sbjct: 495 LLCAAVFGVHLDTEFTGGAMITLSYEGGFDQAAVQKTAAAALENTGLTLQTGENVATGDQ 554 Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 L + + + V + + ++K +V V+ + Sbjct: 555 TLKISMPGTETVTTEQVENLLDSLNENYPDNQFAQLSLSNVSAAMGTKFLQKSLVAVVFA 614 Query: 677 AIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 + +L+YI +RFK + A+ L+ D+ G F L + +AA+LT++GY Sbjct: 615 LVLILLYIALRFKNIGGLTGGMMAVLALVNDLMVVFGTFVLLRTALDGNFIAAMLTILGY 674 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---- 788 S+ND VVVYDR+R+N L SF +L+++S+N++ R++ T++ +++ M + Sbjct: 675 SINDTVVVYDRIRENRALMGKKGSFEELVNQSVNQSARRTLITTITTVMALGVMCIVAKL 734 Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +G I +FA P+ G++ +S+ ++ + + K Sbjct: 735 YGLDSIFTFAFPLMMGMISGVYTSLCVSTSAWVLWSERSKKKN 777 >gi|187930027|ref|YP_001900514.1| preprotein translocase subunit SecD [Ralstonia pickettii 12J] gi|187726917|gb|ACD28082.1| protein-export membrane protein SecD [Ralstonia pickettii 12J] Length = 629 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 167/515 (32%), Positives = 270/515 (52%), Gaps = 24/515 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL P +L + + LGLDLRGG H +L+VD + V L Sbjct: 109 IVALNLLPGSPRWLSGAP-------FFAKPMFLGLDLRGGVHFLLQVDMNGAVTKKLDSL 161 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ +GI + + N IT+ F+ + + + + Sbjct: 162 AGDIRTQLRDKGIRHSGIDRNGNTITIKFSTPDDADRARTLLADSTR--------ELAYT 213 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + + ++ + + +V +A++Q++ + R++++G++E IQ+ G RI++QL Sbjct: 214 VDKSADGATLTGTFTAAAMKEVQDNAVKQNIVTLHNRVNELGVAEPVIQQQGPDRIVVQL 273 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVE 248 PG QD ++ + ++G TA + PN L D L++ +V Sbjct: 274 PGVQDTAKAKDIIGRTATLEARLADPNAPLAPRPGDPVPLGDELFTQGRSAPVLLQKQVI 333 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G + A+A FD + VDI+ D G R +V+RDNIGK + +VL + + Sbjct: 334 FTGDRITSASAGFDQNHNS-SVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 392 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G + E A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 393 VATIQSELGSRFQITGMGSTEAASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 452 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + + G + I +FM++ Y +G + ++ +NV L +ALLS+L ATLTLP IA I L +G Sbjct: 453 DSALYGFLAISVFMVLYYMLFGAFSVAALGVNVFLLIALLSMLQATLTLPGIAAIALALG 512 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NER+REE R S ++ GF RA++TI DSN+T LIA + L FG G V Sbjct: 513 MAIDANVLINERVREELRSGASAQMAIAAGFDRAWATILDSNVTTLIAGLALIAFGSGPV 572 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFAI L I SMF+A+ R ++ KK Sbjct: 573 RGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKKK 607 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG + +A+ +++ + + F ++ L +++ + Sbjct: 431 MEIIEERTIGPSLGADNIKKGFDSALYGFLAISVFMVLYY-MLFGAFSVAALGVNVFLLI 489 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ + S + I + Sbjct: 490 ALLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---SGASAQMAIAAGFDRA 546 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FAI GI + S++F ++ Y + Sbjct: 547 WATILDSNVTTLIAGLALIAFGSGPVRGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKK 606 Query: 829 K 829 K Sbjct: 607 K 607 Score = 37.7 bits (85), Expect = 9.1, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 15/33 (45%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34 R W ++ + IG L LPNF ++ + Sbjct: 3 RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQ 35 >gi|294010574|ref|YP_003544034.1| preprotein translocase SecD subunit [Sphingobium japonicum UT26S] gi|292673904|dbj|BAI95422.1| preprotein translocase SecD subunit [Sphingobium japonicum UT26S] Length = 533 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 192/533 (36%), Positives = 302/533 (56%), Gaps = 15/533 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W V+ + IG+ A+P+FLP S++ + P M + R++LGLDL GGSHL+LE Sbjct: 5 PRWAVVAILLPLLIGIACAVPSFLPDSVVGQLPKFM-QTRVNLGLDLSGGSHLLLEASTQ 63 Query: 64 DFVNGFLQMYSDELRSFLK--KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + +++R+ L+ I + + K++ + + +++ Sbjct: 64 DVAKQRIANMEEQVRTELRRGDTKIAIGDISSRDGKLSFMVRNPSQVDAAVERIR---PL 120 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + + I I ++ ID + A+E + E+IR+RID++G E TI Sbjct: 121 TQGAGLTGQRDFNVEVVNSSTIVITPTKAGIDNAVKGAMEVATEVIRKRIDEMGTREPTI 180 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233 Q+ G +RI++Q+PG QDP L+ LLG TAK+ F V N + G + Sbjct: 181 QQQGDNRIVVQVPGLQDPKALKDLLGQTAKLEFKLVDVNANPAEVAQGRAPVGSEVLPYP 240 Query: 234 -RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 + V +V +SG L A +D ++P+V+I F+ G R+F +VT N+ + Sbjct: 241 TNPAGPPVIAVYRQVMVSGEDLTDAQQGYDQTGNQPIVNIRFNGAGGRKFGQVTSQNVNR 300 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 P A++LDG+VL+AP IN+ I G AQISG+FT+E+A LA LR+G LP+ L +VEER V Sbjct: 301 PFAIILDGQVLSAPNINEPILGGSAQISGSFTVESANQLAIALRSGKLPVALTVVEERTV 360 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G LG+DSI G A V + + FM V YG++G+ A+ ++ +NV++ L ++ +LGATL Sbjct: 361 GPQLGADSIRAGLMASVIAVAAVAAFMFVSYGRFGMYANLAVAINVLVILGVMGILGATL 420 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAG VL IG AVD+N+L+ ERIREE R+ + V +++ G+ A TIF++N+T I Sbjct: 421 TLPGIAGFVLTIGTAVDANVLIYERIREERRRGRGVVQAIEHGYKEASRTIFEANVTHAI 480 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 A ++ G G V+GFAI + + I S+FTA++ R ++ +R K+ I I Sbjct: 481 AGGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTRLLVSRWVRAKRPTEIHI 533 Score = 95.5 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 70/172 (40%), Gaps = 4/172 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ + IR G++ +I+ A+ ++++ + F + A + +++ LG + G Sbjct: 361 GPQLGADSIRAGLMASVIAVAAVAAFMFVSYG-RFGMYANLAVAINVLVILGVMGILGAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A + IG +V+ V++Y+ + + I+ E ++ Sbjct: 420 LTLPGIAGFVLTIGTAVDANVLIYE---RIREERRRGRGVVQAIEHGYKEASRTIFEANV 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 I+ M G + FAI + GI + +++ ++ + Sbjct: 477 THAIAGGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTRLLVSRWVRAKRP 528 >gi|253583473|ref|ZP_04860671.1| export membrane protein SecD [Fusobacterium varium ATCC 27725] gi|251834045|gb|EES62608.1| export membrane protein SecD [Fusobacterium varium ATCC 27725] Length = 314 Score = 228 bits (580), Expect = 4e-57, Method: Composition-based stats. Identities = 85/293 (29%), Positives = 149/293 (50%), Gaps = 2/293 (0%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I+ ++ VG+S++ + S+ F GLNYGIDF GG + +P+ L+ + +NL+ Sbjct: 3 IEIIKNSKKFVGLSLVIVVLSLGAFFVKGLNYGIDFSGGNLFQLRFEKPITLNDINNNLD 62 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + + V + +I I E VG Sbjct: 63 EVSKDINQVNPNSRKVQISEDNTVIIRTPELTETEKTEVLNNLKKIGTF-DINKEEKVGA 121 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 I EL I + I A +++YI RF++ FA+ A+ L D+ +G +L G E + Sbjct: 122 SIGEELKTSAIYALGIGAFLIILYITFRFEFTFAIAAVAALFHDLIIAVGVISLLGYEVD 181 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 +AA+LT++GYS+ND +VV+DR+R+N+K + SF D ++KSIN+ + RS+ TS+ Sbjct: 182 TPFIAAILTILGYSINDTIVVFDRIRENLKRKNKN-SFEDCLNKSINQVMIRSINTSVTT 240 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +++ + V+GG + +F + + GI+ SS+FIA P++ F+ + + Sbjct: 241 LFAIIAILVFGGDSLKTFIVTLLIGILAGTYSSVFIATPLVYFLDKSKKGPNK 293 >gi|238926105|ref|ZP_04657865.1| protein translocase subunit SecF [Selenomonas flueggei ATCC 43531] gi|238885995|gb|EEQ49633.1| protein translocase subunit SecF [Selenomonas flueggei ATCC 43531] Length = 305 Score = 228 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 1/296 (0%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 R IS+L I I + G N+GIDF GG + + +PV L VRS Sbjct: 1 MPKFDIAGHRKIWFLISLLVIIPGIICMCVRGFNFGIDFTGGTIMDLRFEQPVTLQGVRS 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 +L + + Q E + + V +T+ V T+ E Sbjct: 61 SLAKYDLDGSTIQFAGAEAGIDASENVMIRTIDLEENQRKEVMASLTQDVGPYTVLREEK 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG I ELI ++ ++IS +++Y+ RF+W F + A+ LI DI + F+ Sbjct: 121 VGATIGGELITNAVLALVISWALIILYVAYRFEWRFGVSAVLALIHDIIIVMAVFSFTQR 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775 + + + +AA+LT++GYS+ND +V++DR+R+N+KL+ +L+++SI +TL RS+YT Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDVNELVNRSIYQTLTRSLYT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + +GG FA + G V SSIFIA+ + + + + Sbjct: 241 VFTVLFTTFALYWFGGETTKDFAFALLIGFAVGCYSSIFIASQLWIELRNRTEHRR 296 >gi|153208373|ref|ZP_01946711.1| protein-export membrane protein SecF [Coxiella burnetii 'MSU Goat Q177'] gi|212218577|ref|YP_002305364.1| preprotein translocase subunit SecF [Coxiella burnetii CbuK_Q154] gi|120576030|gb|EAX32654.1| protein-export membrane protein SecF [Coxiella burnetii 'MSU Goat Q177'] gi|212012839|gb|ACJ20219.1| protein translocase subunit [Coxiella burnetii CbuK_Q154] Length = 304 Score = 228 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR R W S + + SI L +GLN G+DF GG Q+ V +PVD Sbjct: 1 MEFFKTNTKIPFMRQRKWAGIFSAIIFLASIITLAVNGLNLGLDFTGGTQVEVNFTKPVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R NL + +D + ++ +K+K+ +P Sbjct: 61 TNQIRKNLAEAGFPQAVVRVYDVRHISVRVAPHKELTQE-------ELKEKLMSAMPGGH 113 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I + + +GP++ ++L+ GI+ VI++ IA +IYI +RF+ FAL A LI D LG Sbjct: 114 IGSLDYIGPQVGKQLMTNGILAVIVALIATMIYIALRFEMRFALSAAIALIHDPVLILGI 173 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+ F IEFNL +AAVLT+IGYS+ND +VVYDR+R+N + + +++D SIN+TL Sbjct: 174 FSFFHIEFNLIVLAAVLTVIGYSLNDTIVVYDRIRENFRKVRRG-TPTEIVDLSINQTLS 232 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS I VL + ++GGS + FA+ + GIV+ SSI++A + + R Sbjct: 233 RTIMTSGLTLIVVLALFIFGGSTLRPFALALIIGIVIGTYSSIYVAGSLAVTFGLRRR 290 >gi|255022134|ref|ZP_05294137.1| Protein-export membrane protein secF [Acidithiobacillus caldus ATCC 51756] gi|254968398|gb|EET25957.1| Protein-export membrane protein secF [Acidithiobacillus caldus ATCC 51756] Length = 316 Score = 228 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 113/298 (37%), Positives = 175/298 (58%), Gaps = 1/298 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L+ + FM RF +GIS L + SI GL+Y IDF GG + + R D Sbjct: 1 MELLKTRTHVDFMSRRFLFLGISALLIVASIAAYLVRGLDYSIDFTGGTLVELGFTRTPD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ VR L+ D Q F G+++ L+RL+ QPG+S A + V +K P Sbjct: 61 LAAVRGTLDKAGYHDAVVQTFGGDRDLLIRLRTQPGESSAVASRILQVFQKDQRQFPGVE 120 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ + L +GI+ +II + +LIY+ RF+W FA+G + ++ D +GF Sbjct: 121 LRRTEYVGPEVGKALRNQGIMALIIVTLGILIYVGFRFEWRFAVGGVAAMLHDPILVVGF 180 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FAL EF+LT +AA+L ++GYS+ND VVV+DRMR++++ + S ++ + +INETL Sbjct: 181 FALTQQEFSLTVIAALLVVMGYSLNDTVVVFDRMREDLRASRSG-SVAEIFNIAINETLS 239 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS F+ + + ++GG VI FA + G+VV SSIFIA+PI L++ R Sbjct: 240 RTLITSFITFMVAMSLFLFGGPVIHGFATALVIGVVVGTYSSIFIASPIALWLGLKRE 297 >gi|262371076|ref|ZP_06064398.1| preprotein translocase subunit SecD [Acinetobacter johnsonii SH046] gi|262313962|gb|EEY95007.1| preprotein translocase subunit SecD [Acinetobacter johnsonii SH046] Length = 633 Score = 228 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 158/535 (29%), Positives = 271/535 (50%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D + ++ + +LR + I Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAIAQRMETSATDLRRQFRDNKI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ N IT+ FA++ + D + + + T T + + Sbjct: 163 KFNSLALNNNTITVQFANNDDRTAAQDYLRSNGNEF--------NQQAVATATGSTLRLT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ S+A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V N + G + L+ ++G Sbjct: 275 GRTANLEFRLVSDQNDQVIDPYTGKSNGQPLPPGTELFAYQSLDSGRELLLNRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F T V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDTGGAEVNITLDTAGGKLMSDATRNAVGKRMAVLFIENKQRISYITDPA 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QA+ + +I+G + + A LA MLRAG+L + V Sbjct: 395 TGAQTEVRTPYAESVVINAATIQAVLGSQFRITGLDSPQEASELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I KG + G +L+ ++M+V + +GL+A+F++ N+ + L ++S Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTVMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE + S ++ G+ RAY+TIFDSN Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMKWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I K+ Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQLIYGKKRNLK 629 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 94/250 (37%), Gaps = 4/250 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + D + + N + L G Q + + Sbjct: 386 RISYITDPATGAQTEVRTPYAESVVINAATIQAVLGSQFRITGLDSPQEASELALMLRAG 445 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +VGP + +E I KG++ I + + I++ + F+ F L A L+ + Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVFN 504 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + L + G L +A ++ IG +V+ V++ +R+R+ MK S + I Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMKW---GASPKQAIVA 561 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ F+ + G I FA+ + GI+ + ++I + I+ I Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQLI 621 Query: 824 YDWRAKNARI 833 Y + ++ Sbjct: 622 YGKKRNLKKL 631 Score = 42.4 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 51/374 (13%), Positives = 88/374 (23%), Gaps = 35/374 (9%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR W +L ++ I L ALP+ P +++ Sbjct: 1 MRYPAWKYLLILVVLTISTLYALPSLYPDEPA-------------------------VQI 35 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 Q + LK E I N L S + + + L Sbjct: 36 SGAKAGTQIDQSIVQKAEQILKSESISSHDNSFSNNAALLRLDSSEAQLKAKEALRRGLG 95 Query: 121 G-------VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME---IIRQR 170 + +K ++ + AI Q ME +R Sbjct: 96 DDYVVALNLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAIAQRMETSATDLRR 155 Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230 + + L ++ I +Q D + + L + + + + Sbjct: 156 QFRDNKIKFNSLALNNNTITVQFANNDDRTAAQDYLRSNGNEFNQQAVATATGSTLRLTY 215 Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +R + Y V + +N + I + G + E R Sbjct: 216 TDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVLG 275 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 VI+ Q T A R L + ER Sbjct: 276 RTANLEFRLVSDQNDQVIDPYTGKSNGQPLPPGTELFAYQSLDSGRELLLNRNRILTGER 335 Query: 351 NVGADLGSDSIYKG 364 A G G Sbjct: 336 VQNASSGFSQDTGG 349 >gi|71908893|ref|YP_286480.1| preprotein translocase subunit SecD [Dechloromonas aromatica RCB] gi|71848514|gb|AAZ48010.1| SecD/SecF/SecDF export membrane protein:SecD export membrane protein [Dechloromonas aromatica RCB] Length = 625 Score = 228 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 169/529 (31%), Positives = 273/529 (51%), Gaps = 27/529 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + LL A P +L + LGLDLRGG H +L+VD + L Sbjct: 105 VVALNLLAASPQWLTSLHA---------LPMYLGLDLRGGVHFLLQVDMKGALTKRLDST 155 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 S +LR+ ++ + + + + +I + F D+ + ++ + D + Sbjct: 156 SADLRTVMRDKNLRHGGVNREGERIIIKFRDAETQNKARIAISDSQPDLLLTDAGDAAEP 215 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + L ++ A++Q++ + RI+++G++E IQ+ G+ RI++QL Sbjct: 216 --------RLIATLKPQAQQKIGEFALKQNITTLHNRINELGVAEPVIQQQGADRIVVQL 267 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKV 247 PG QD ++ + +LG TA + V + FG + G LV+ +V Sbjct: 268 PGVQDTAKAKDILGRTATLEIRMVDDSTGALDAALAGNPPFGTEVYNERGGQPLLVKKQV 327 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVL 303 ++G L A FD +T + V ++ D GAR F ++TR+N+GK + G V+ Sbjct: 328 VLTGDRLTDAQPGFDNQTQEAAVHLTLDAAGARIFKDITRENVGKRMAILLIEKGKGEVV 387 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 TAPVI I G+ QISG T A A +LRAGSL + I+EER +G LG+++I K Sbjct: 388 TAPVIRTEIGGGRVQISGRMTTTEANDTALLLRAGSLAAPMEIIEERTIGPSLGAENIQK 447 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G + + G I +FMI+ Y +G+V+ ++ N++ +A+LSLL ATLTLP IA I L Sbjct: 448 GFHSTMWGFAAIAVFMIIYYQMFGVVSVLALASNLLFLVAILSLLQATLTLPGIAAIALT 507 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+A+D+N+L+NER+REE R ++ G+ RA+ TI DSNIT LIA + L FG G Sbjct: 508 LGMAIDANVLINERVREELRAGMPPQAAISEGYERAFGTILDSNITTLIAGLALLIFGSG 567 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 VRGFA+ L IL S+F+++ + R ++ I +K + Sbjct: 568 PVRGFAVVHCLGILTSIFSSVVVSRGLVNLIYGRQKKLTKVAIGQLWKP 616 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 90/212 (42%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + E I+KG + A+ Sbjct: 401 VQISGRMTTTEANDTALLLRAGSLAAPMEIIEERTIGPSLGAENIQKGFHSTMWGFAAIA 460 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ I ++ F + ++ L ++ + +L L +AA+ +G +++ V++ Sbjct: 461 VFMIIYYQM-FGVVSVLALASNLLFLVAILSLLQATLTLPGIAAIALTLGMAIDANVLIN 519 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I + G + +++ I+ L + ++G + FA+ Sbjct: 520 ERVREELRA---GMPPQAAISEGYERAFGTILDSNITTLIAGLALLIFGSGPVRGFAVVH 576 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + SS+ ++ ++ IY + K ++ Sbjct: 577 CLGILTSIFSSVVVSRGLVNLIYGRQKKLTKV 608 Score = 45.8 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 40/161 (24%), Gaps = 31/161 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I ++ +G + LPNF +S ++V Sbjct: 3 RYPLWKYITIAIALVMGFVYTLPNFFGESPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + LK GI ++ N + F D+ + D + Sbjct: 38 SAKATIKVDEKAKARVEDSLKAAGITHDGIQLDFNGVKTRFKDTDTQLKAKDALEKAFN- 96 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162 +V S + + ++ Sbjct: 97 -----PDAADPQYVVALNLLAASPQWLTSLHALPMYLGLDL 132 >gi|87200089|ref|YP_497346.1| preprotein translocase subunit SecD [Novosphingobium aromaticivorans DSM 12444] gi|87135770|gb|ABD26512.1| protein-export membrane protein SecD [Novosphingobium aromaticivorans DSM 12444] Length = 535 Score = 228 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 186/536 (34%), Positives = 302/536 (56%), Gaps = 17/536 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W VI ++ + + A+P+ L +PS++P+ +++LGLDL GGSH++LE Sbjct: 2 LEFPRWKVIWLWLLTLVCVAAAIPSLTSTMGL-AWPSSLPEPKVNLGLDLAGGSHILLEA 60 Query: 61 DEDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 D ++ + +R+ L + I + + +T AD + + + + Sbjct: 61 DPSQVRQQRIEGMEESVRTKLKQDDKNIRISDISNRDGALTFVVADPSQVDAVREAI--- 117 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 L N + + + + IDQ ++ A++ ++E++R+RID +G E Sbjct: 118 LPLTNGAGLTGQRDWDINVVDGNRFVLKPTDAGIDQAVTQAMDTAVEVVRKRIDALGTKE 177 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG--------- 229 TI R G RI++Q+PG QDP L+ LLG TAK+ F V + G Sbjct: 178 PTIIRSGPTRIVVQVPGLQDPQALKNLLGQTAKLEFKLVDTSALPSDVAQGIAPPGSEIV 237 Query: 230 --VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V V+ I G L A + +T++PVV+I+F+ G +F ++T Sbjct: 238 PYVSPAEGGGVPSIAVKRLGGIRGDQLTNAQQTNNQQTNEPVVNITFNTEGGAKFAKLTT 297 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 N+GK A++LDG+VL+APVIN+ I G A ISG FT E+A LA LR+G+LP+ L +V Sbjct: 298 QNVGKQFAIILDGKVLSAPVINEPILGGSAVISGRFTTESANQLAISLRSGALPVDLKVV 357 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG DLG+DSI KG A+ G + + +F++ YG++G+ A+ ++ +NV++ L ++ + Sbjct: 358 EERTVGPDLGADSIRKGVIAMGVGTLALAVFILATYGRFGVYANLAVIINVLMILGIMGI 417 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +G TLTLP IAG VL IG AVD+N+L+NERIREE + + V ++++G+ A IFD+N Sbjct: 418 IGTTLTLPGIAGFVLTIGAAVDANVLINERIREERHRGRKVVQAVELGYKEASRAIFDAN 477 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 IT +IA V++F FG G V+GFA+ + + I S+FTA+++ R + +R + I Sbjct: 478 ITNVIAAVLMFAFGSGPVKGFAVVLMIGIATSVFTAVTLTRMWVAGWLRRARPTEI 533 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 75/175 (42%), Gaps = 8/175 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + IRKG++ + + +A+ ++I + F + A +I+++ LG + G Sbjct: 363 GPDLGADSIRKGVIAMGVGTLALAVFILATYG-RFGVYANLAVIINVLMILGIMGIIGTT 421 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A + IG +V+ V++ +R+R+ ++ E ++ Sbjct: 422 LTLPGIAGFVLTIGAAVDANVLINERIREERHRGRK---VVQAVELGYKEASRAIFDANI 478 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 I+ + M +G + FA+ + GI +S+F A + + AR Sbjct: 479 TNVIAAVLMFAFGSGPVKGFAVVLMIGIA----TSVFTAVTLTRMWVAGWLRRAR 529 >gi|88812650|ref|ZP_01127897.1| SecD export membrane protein [Nitrococcus mobilis Nb-231] gi|88790066|gb|EAR21186.1| SecD export membrane protein [Nitrococcus mobilis Nb-231] Length = 619 Score = 228 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 162/537 (30%), Positives = 276/537 (51%), Gaps = 36/537 (6%) Query: 17 IGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 +GL + + ++ P+ + + LGLDLRGG H ++EVD + ++ Y Sbjct: 91 VGLALGRQYTVALNLAPTTPAWLRAINAQPMYLGLDLRGGVHFLMEVDTQAAIKQAMERY 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + R+ L++E I + + + ++F + +E + + + Sbjct: 151 VNAFRTQLREERIRYSEVALNGHSVQVAFKQAPVREAAFQALRNEY--------PELTFS 202 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + +++ +L Q + ++ + A++Q++ +R R++++G++E IQR G I+++L Sbjct: 203 ADEHDGKFQLTALLPQGEVQEIENLAVQQNITTLRNRVNELGVAEPVIQRQGGDHIVVEL 262 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------DGNQYLVEDKV 247 PG QD +R + +LG TA + FH V ++ D DG L++ Sbjct: 263 PGVQDTARAKDILGATATLEFHLVNMSHFPYEGEPNQPVAPDDKVYPERDGGYVLLKRDT 322 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307 ++G + A A FD +T P V I + G + T +++ +AVV Sbjct: 323 ILTGEFITDAQAGFDQQTGGPEVTIRLNGAGGKMMNRFTSEHVKDYMAVVFIENQTQTRK 382 Query: 308 I-------------------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 + Q + +I+G + LA +LRAGSL ++IVE Sbjct: 383 VNGELKRIRSRSEEVINVAQIQEPLGSRFRITGLDNPRESHNLALLLRAGSLAAPISIVE 442 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A+ G L+VLFM + Y +GL AD ++F N+IL +A+LS+L Sbjct: 443 ERTIGPSLGQHNIDQGFLAVSIGFALVVLFMALYYRIFGLFADAALFANLILIIAVLSML 502 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLTLP IAGIVL +G+AVD+N+L+ ERIREE + +++ G+++A STI D+N+ Sbjct: 503 QATLTLPGIAGIVLTVGMAVDANVLIFERIREELHAGATPQTAINAGYAKALSTITDANV 562 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LIA + LF FG G V+GFA+T+ + I+ SMFTAI RA+ + ++ + I Sbjct: 563 TTLIAALALFAFGTGPVKGFAVTLCIGIVTSMFTAIMGTRALANLVYGGRRGVRLAI 619 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 37/262 (14%), Positives = 96/262 (36%), Gaps = 4/262 (1%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + + V V L+ ++ N + L G Sbjct: 356 MMNRFTSEHVKDYMAVVFIENQTQTRKVNGELKRIRSRSEEVINVAQIQEPLGSRFRITG 415 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 + + + + +I +GP + + I +G + V I +++++ + Sbjct: 416 LDNPRESHNLALLLRAGSLAAPISIVEERTIGPSLGQHNIDQGFLAVSIGFALVVLFMAL 475 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F L A L ++ + ++ L +A ++ +G +V+ V++++R+R+ Sbjct: 476 YYRI-FGLFADAALFANLILIIAVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFERIRE 534 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 + + + I+ + L ++ I+ L + +G + FA+ + GIV Sbjct: 535 ELHA---GATPQTAINAGYAKALSTITDANVTTLIAALALFAFGTGPVKGFAVTLCIGIV 591 Query: 807 VAASSSIFIAAPILLFIYDWRA 828 + ++I + +Y R Sbjct: 592 TSMFTAIMGTRALANLVYGGRR 613 Score = 44.3 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 27/150 (18%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ +GLL ALPN + L+ ++ + D Sbjct: 4 RYPLWKYLIIAVALVVGLLYALPNLYGEDPA-----------------LQITTN---QGD 43 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 ++ L EGI N + + F D+ + A++V L L + Sbjct: 44 APSA------PVRQQILDLLADEGIAAKGSGVRDNHLLVRFHDTEAQLKAANQVGLALGR 97 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 LN+ P + + + Sbjct: 98 QYTVALNLAPTTPAWLRAINAQPMYLGLDL 127 >gi|163736764|ref|ZP_02144183.1| SecF protein [Phaeobacter gallaeciensis BS107] gi|163742662|ref|ZP_02150047.1| protein-export membrane protein SecF [Phaeobacter gallaeciensis 2.10] gi|161383917|gb|EDQ08301.1| protein-export membrane protein SecF [Phaeobacter gallaeciensis 2.10] gi|161390634|gb|EDQ14984.1| SecF protein [Phaeobacter gallaeciensis BS107] Length = 322 Score = 228 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 175/305 (57%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R LIP+ + F + +GIS L + GLN+GIDF+GG + + Sbjct: 1 MRLKLIPENTSFDFFKRWKLWLGISALMIVVGFASFALQGLNFGIDFRGGTTIRTESTTE 60 Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 +D+ R+ LE L++GD + + +VR+Q Q V+ V + Sbjct: 61 IDVGTYRAALEPLELGDITISEVFDPTFAEDQHVAMVRIQAQADGESISGEVIADVNAAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + P + E VGPK+S EL++ ++ V ++ A+LIYIW+RF+W FALGA+ L+ Sbjct: 121 DAVAPGIKFVSVESVGPKVSGELVQTAVLAVALAIGAVLIYIWLRFEWQFALGAVAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I+F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y ++++ Sbjct: 181 DVVLTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKK-PLAEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINETL R+V TS+ ++++ + V GG VI F M +G+++ SSIF+A+ ILL+ Sbjct: 240 ISINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIIGTYSSIFVASTILLW 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|299139861|ref|ZP_07033033.1| protein-export membrane protein SecF [Acidobacterium sp. MP5ACTX8] gi|298598215|gb|EFI54381.1| protein-export membrane protein SecF [Acidobacterium sp. MP5ACTX8] Length = 320 Score = 228 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 92/309 (29%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 532 FLIPDCIAIQFMRARFWGVGISILF-SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + I ++ +++ +G S++F + + F H + G+DF+GG Q+ V ++ + Sbjct: 1 MELFRSSNIDWLGKKWYFLGFSLIFSVAGILSMAFWHHIPLGVDFRGGTQITVHFDQAPN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 +R +++ I D + Q G N ++ L A + ++ + Sbjct: 61 EDHIRRAIDAAGIKDPTIQRISGANGAAVNNVIISLPESTASDSAHDQGRSTIENALNAN 120 Query: 646 --VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 ++Q +IVGP ++L + + I S I ML+Y+W RF+ + + A+ + D Sbjct: 121 YHDSGFSVQQVDIVGPTAGKQLQHQAWLATIYSLIGMLVYLWFRFELIYGVAAVVAVFHD 180 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 T+GFF+L E +LT +AA+LTLIGYS+ND +VV+DR+R+N+ + S D++++ Sbjct: 181 TLITVGFFSLTNQEISLTVIAAILTLIGYSMNDTIVVFDRIRENLAS-SRRESLSDVVNR 239 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 SIN+TL R+V S F++VL + ++GG V+ F+ + GI++ SSI +AAP+L+ Sbjct: 240 SINQTLSRTVIASGLTFLTVLSLYLFGGEVLHGFSFALVVGILIGTYSSIAVAAPMLVAY 299 Query: 824 YDWRAKNAR 832 DWR ++ + Sbjct: 300 QDWRTRSGK 308 >gi|114320375|ref|YP_742058.1| preprotein translocase subunit SecF [Alkalilimnicola ehrlichii MLHE-1] gi|114226769|gb|ABI56568.1| protein translocase subunit secF [Alkalilimnicola ehrlichii MLHE-1] Length = 314 Score = 228 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 96/294 (32%), Positives = 162/294 (55%), Gaps = 3/294 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I F+ R GV +S L + SI L GLN GIDF GG + V D Sbjct: 1 MELFKREPRIDFLGKRRLGVVLSALLLLASIGSLAMQGLNLGIDFTGGTVVEVGYPEAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L + LE GD Q F +++ ++R+ + D A + E V + P + Sbjct: 61 LGRIDGVLEDAGYGDAVTQFFGTQRDVMIRVPPRDVDESAV--ISEEVLAALQADSPDAE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ REL +G++ ++ + +L+Y+ RF++ FA+G++ L+ D+ LGF Sbjct: 119 LRRVEFVGPQVGRELTEQGLLAMLYALGGILVYVAFRFEYRFAIGSVAALLHDVILVLGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F++ ++F+LT +AAVL +IGYS+ND +VV+DR+R+N R++++ SIN+TL Sbjct: 179 FSITRMQFDLTVLAAVLAIIGYSLNDTIVVFDRIRENFLKLRK-AGPREVMNISINQTLS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R++ TS + V + + GG +I FA + G+++ SSI++A+ L + Sbjct: 238 RTLITSFTTLLVVGSLMLVGGELIRGFATALLVGVLIGTYSSIYVASASALALG 291 >gi|198283822|ref|YP_002220143.1| protein-export membrane protein SecF [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248343|gb|ACH83936.1| protein-export membrane protein SecF [Acidithiobacillus ferrooxidans ATCC 53993] Length = 316 Score = 228 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 111/298 (37%), Positives = 172/298 (57%), Gaps = 1/298 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L + FM R+ +G+S L I S+ + GLNY IDF GG + + ++ D Sbjct: 1 MELFKVRTHVDFMSRRWIFLGVSALLIIASVAVFLVRGLNYSIDFTGGTLVELAFSKTPD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR L D Q F G+++ L+RL+ PG+S A + V +K P Sbjct: 61 LGAVRGTLTQAGFHDAVVQTFGGDRDLLIRLRTVPGESSAVGNTILQVFRKDQVEYPDVQ 120 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ +EL KGI+ +II + +LIY+ RF+W FA+G + ++ D +GF Sbjct: 121 LRRTEYVGPEVGKELRNKGIMALIIVTLGILIYVGFRFEWRFAVGGVLAMLHDPILVVGF 180 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA+ EF+LT +AA+L ++GYS+ND VVV+DRMR++++ + + + +INETL Sbjct: 181 FAISHEEFSLTVIAALLVIMGYSLNDTVVVFDRMREDLRASRSG-DVAQIFNVAINETLS 239 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R+V TS F+ L + ++GG VI FA + G+VV SSIF+A+PI L++ R Sbjct: 240 RTVITSFITFMVALSLFLFGGPVIHGFATALVIGVVVGTYSSIFVASPIALWLGLKRE 297 >gi|261212156|ref|ZP_05926442.1| protein-export membrane protein SecF [Vibrio sp. RC341] gi|260838764|gb|EEX65415.1| protein-export membrane protein SecF [Vibrio sp. RC341] Length = 315 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR + +S+ S+ L T LN+G+DF GG + V +P Sbjct: 1 MFQILKADKMIDFMRWSKFAFALSLAMIAASMFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ LE+ GD + QNF ++ +VRL+ + D +T +++ Sbjct: 61 NLDQIRTALEAKGFGDATVQNFGSARDVMVRLRPRE-DMAGETLGNQILAAIKEGTGGNV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S + +L+Y+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + ++++ SI +TL Sbjct: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GG++I FA+ + GI V SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFAKGGALIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297 >gi|163746863|ref|ZP_02154220.1| protein-export membrane protein SecD, putative [Oceanibulbus indolifex HEL-45] gi|161379977|gb|EDQ04389.1| protein-export membrane protein SecD, putative [Oceanibulbus indolifex HEL-45] Length = 549 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 196/544 (36%), Positives = 287/544 (52%), Gaps = 29/544 (5%) Query: 6 WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43 W I + C GL +ALPN ++ +P MP Sbjct: 7 WKRIAIVLTCLAGLWLALPNAFYAPVEKHNDAVAAIDVQGSTPELEAQRALWPEWMPSGL 66 Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA 103 ++LGLDLRGG+HL+ EV D ++ E+R L+ ++ + Sbjct: 67 VNLGLDLRGGAHLLAEVQLADVYASRMEAQWPEVRDALRSLTPVRREEAPAG-ELRVRLN 125 Query: 104 DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163 D+ + V + + T I+I LS ++QS Sbjct: 126 DASKMAEALQITRDLARPVTTVTGAGGSDINVSGTDG-TINITLSDAEKQATDERTMQQS 184 Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223 +EI+R+RID++G E TIQR G+ RILIQ+PG + L+ ++GTTA+++F+ V+ S Sbjct: 185 LEIVRRRIDEVGTREPTIQRQGADRILIQVPGIGSAAELKAIIGTTAQLTFNPVVNRGSS 244 Query: 224 KGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279 + G+ D +G Y VE ++G L A +FD P V FD GA Sbjct: 245 ENDNPGIGNAILPAADEEGVFYTVETAPVVTGEQLVDAQPSFDQNG-APAVSFRFDTSGA 303 Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339 R+F + T DNIG P A+VLD V++AP I IP G I+G F++E + LA +LRAG+ Sbjct: 304 RKFGDYTADNIGSPFAIVLDNEVISAPTIQSHIPGGSGIITGRFSVEESTNLAVLLRAGA 363 Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399 LP L+ VEER +G +LG DSI G A + ++ FM YG +G A+ ++ +NV Sbjct: 364 LPAGLSFVEERTIGPELGQDSIDAGKIATMVAFAAVLFFMWASYGLFGFFANIALIINVG 423 Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459 L LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE R + ++ +G+ RA Sbjct: 424 LIFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREEQRNAKGAARAISLGYERA 483 Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519 S I D+NIT I V+LF G G VRGFA+T+GL I+ S+FTA + R +++ ++ Sbjct: 484 LSAILDANITTFIVAVILFALGSGPVRGFAVTLGLGIMTSVFTAFFVTRLLVVIWFERRR 543 Query: 520 MKSI 523 K+I Sbjct: 544 PKTI 547 Score = 151 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 81/175 (46%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + +++ A+L ++W + F A LI+++ G +L G Sbjct: 375 TIGPELGQDSIDAGKIATMVAFAAVLFFMWASYGL-FGFFANIALIINVGLIFGLLSLIG 433 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ + + I L + Sbjct: 434 ATLTLPGIAGIVLTVGMAVDANVLIFERIREEQR---NAKGAARAISLGYERALSAILDA 490 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ FI + + G + FA+ + GI+ + ++ F+ +++ ++ R Sbjct: 491 NITTFIVAVILFALGSGPVRGFAVTLGLGIMTSVFTAFFVTRLLVVIWFERRRPK 545 >gi|78222074|ref|YP_383821.1| preprotein translocase subunit SecD [Geobacter metallireducens GS-15] gi|78193329|gb|ABB31096.1| SecD export membrane protein [Geobacter metallireducens GS-15] Length = 533 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 191/535 (35%), Positives = 288/535 (53%), Gaps = 23/535 (4%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65 W L + + + P F+ + +PK+RI+LGLDL+GG+HLV+EV+ Sbjct: 7 WRFGLILLFIFLSGIYLTPTFVSPLP-SWWKGLLPKDRINLGLDLQGGTHLVMEVEIQKA 65 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 V G L + + +L L + I + R ++I L+F D + + V + Sbjct: 66 VEGALDLIASDLEDSLSAKTIRFKKIGRIASDRIQLTFYDRGTADTVQKMVKEKYPTLEL 125 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 D + + + + + A+ Q++E IR RIDQ G+SE I R Sbjct: 126 VPPYD-------EGGFVSMQLRMGEKEAQERKDRAVAQALETIRNRIDQFGVSEPVIARE 178 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------- 236 G I++QLPG +DP R +L+G TA++ F V + G Sbjct: 179 GLTHIVVQLPGIKDPKRAIELIGRTARLEFKLVDETVNPATATPGTIPEDSELLMEKKTD 238 Query: 237 ------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +V+ K I+G L A D + ++P V I F+ GAR F +VT N+ Sbjct: 239 PTTGAVTEIPLVVKKKAMITGDLLTNAQVRIDSQFNQPYVAIEFNSTGARLFDQVTAANV 298 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 GK A+VLD + +APVI + I G AQISG+F+ + A LA +LRAGSLP + +++ Sbjct: 299 GKRFAIVLDNNIYSAPVIRERISGGSAQISGSFSEKEAADLAIVLRAGSLPAPVKVIQNE 358 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG LG DSI KG A + G+ L+V+FM + Y GLVA+F + LNV+ + L+ LGA Sbjct: 359 TVGPSLGQDSITKGLMAGLVGVALVVVFMAIYYKLAGLVANFGMVLNVLYLMGALAALGA 418 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IA IVL IG++VDSN+L+ ERIREE R + +LD G+ +A+ TI DS++T Sbjct: 419 TLTLPGIAAIVLLIGMSVDSNVLIFERIREEMRLGKPPKAALDAGYDKAFLTIMDSHVTT 478 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LI VLF FG G V+GFA+++ L I+I++FTA+ +++ F + ++K + I Sbjct: 479 LITAAVLFQFGTGPVKGFAVSLSLGIIINLFTALVGTKSIFDFALSRLRIKRLSI 533 Score = 127 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 88/181 (48%), Gaps = 5/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E VGP + ++ I KG++ ++ +++++ I +K L A ++L++ +G A Sbjct: 356 QNETVGPSLGQDSITKGLMAGLVGVALVVVFMAIYYKL-AGLVANFGMVLNVLYLMGALA 414 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G L +AA++ LIG SV+ V++++R+R+ M+L + +D ++ Sbjct: 415 ALGATLTLPGIAAIVLLIGMSVDSNVLIFERIREEMRL---GKPPKAALDAGYDKAFLTI 471 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + + I+ + +G + FA+ ++ GI++ +++ I R + R Sbjct: 472 MDSHVTTLITAAVLFQFGTGPVKGFAVSLSLGIIINLFTALVGTKSIF-DFALSRLRIKR 530 Query: 833 I 833 + Sbjct: 531 L 531 >gi|46580229|ref|YP_011037.1| preprotein translocase subunit SecD [Desulfovibrio vulgaris str. Hildenborough] gi|120602386|ref|YP_966786.1| preprotein translocase subunit SecD [Desulfovibrio vulgaris DP4] gi|46449646|gb|AAS96296.1| protein-export membrane protein SecD [Desulfovibrio vulgaris str. Hildenborough] gi|120562615|gb|ABM28359.1| protein-export membrane protein SecD [Desulfovibrio vulgaris DP4] gi|311233785|gb|ADP86639.1| protein-export membrane protein SecD [Desulfovibrio vulgaris RCH1] Length = 532 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 182/535 (34%), Positives = 282/535 (52%), Gaps = 22/535 (4%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + L ++ + LP+ P +P NRISLGLDL GG HL L VD D Sbjct: 6 RWRLALSLVVFLAAVAYVLPSI-PAVKSSPMGRFLPDNRISLGLDLMGGIHLTLGVDVDK 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQI-QNKITLSFADSRFKENIADKVTLFLQGVN 123 V L ++RS +++ I + R + +++ A + ++ + + + + Sbjct: 65 AVENSLSQMGQDIRSSAREKDIFILRPRILPGDRVEFVLAKAAQRDQLGEMLAKQFPQL- 123 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + + L + + A++Q+++ IR RIDQ G++E I++ Sbjct: 124 -----AVGAPVEIDGGQLRYVATLKKEQRTHIEDMALDQAVKTIRNRIDQFGVAEPDIRK 178 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237 HRI +QLPG DP+R Q++G TA + F V + + G+ Sbjct: 179 QQDHRIQVQLPGLADPARAIQIIGKTAHLEFRIVRDDVDPEKLAKGLVPPGVDVLPMMRR 238 Query: 238 -------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 ++ ++ ++G ++ A FD + V ++F+ GA F VT +N+ Sbjct: 239 GGDGSAGEVPVALDKEILLTGENVADARPGFDQFN-QAYVMLTFNSRGAAIFERVTGENV 297 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 K LA+VLDG+V +AP I + I G+A I+G+FT E A LA +LRAGSLP +N++EER Sbjct: 298 RKRLAIVLDGKVYSAPSIQEKIAGGRASITGHFTTEEAQDLAIVLRAGSLPAPVNVLEER 357 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG LG +SI G A G +V+F I+ YG G +A + ++L LA ++ GA Sbjct: 358 TVGPSLGQESIDSGILAGQVGGAAVVVFTILYYGASGAIAVGMLCFTILLILAGMAGFGA 417 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP +AGI L IG+ VD+N+L+ ERIREE R+ + ++ GF RA +I DSN+T Sbjct: 418 TLTLPGLAGIALTIGMGVDANVLIYERIREELRRGLTPLAAIHAGFDRAMLSITDSNLTT 477 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +IA +L+ FG G VRGFA+T+ L IL SMFTAI + RA+ +R K + I Sbjct: 478 VIAAAILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRAVFDLWMRLSPSKRLSI 532 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 97/245 (39%), Gaps = 5/245 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V VR L + G + EK R + + + L +V + + Sbjct: 290 ERVTGENVRKRLAIVLDGKVYSAPSIQEKIAGGRASITGHFTTEEAQDLAIVLRAGSLPA 349 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 P++ ++ + GP + +E I GI+ + A++++ + + A+ L I Sbjct: 350 PVNVLEERTV-GPSLGQESIDSGILAGQVGGAAVVVFTILYYG-ASGAIAVGMLCFTILL 407 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 L A FG L +A + IG V+ V++Y+R+R+ ++ ++ I + Sbjct: 408 ILAGMAGFGATLTLPGLAGIALTIGMGVDANVLIYERIREELR---RGLTPLAAIHAGFD 464 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + +++ I+ + +G + FA+ + GI+ + ++IF++ + Sbjct: 465 RAMLSITDSNLTTVIAAAILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRAVFDLWMRL 524 Query: 827 RAKNA 831 Sbjct: 525 SPSKR 529 >gi|218779039|ref|YP_002430357.1| protein-export membrane protein SecD [Desulfatibacillum alkenivorans AK-01] gi|218760423|gb|ACL02889.1| protein-export membrane protein SecD [Desulfatibacillum alkenivorans AK-01] Length = 533 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 196/542 (36%), Positives = 307/542 (56%), Gaps = 26/542 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--PKNRISLGLDLRGGSHLVL 58 M+N + + L +++ + LL P Q +D+ P I+LGLDL+GG HLVL Sbjct: 1 MKNFTFRLTLVAIVLALALLFLWPTV-NQWFVDKDKDHTAWPHKVINLGLDLQGGMHLVL 59 Query: 59 EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTL 117 EV + V + YSD+L+ L++E I + +T++ S + Sbjct: 60 EVQTQEAVVSTMDRYSDDLKEGLRREHIRSKDQDLINGDTLTVTIIGSEALDKFKKWAGE 119 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + + + + + + +++ ++ + +Q++E IR RID++G++ Sbjct: 120 EMSELVPDYDPQGENTVCT--------FTMPESDQKAIMDSSRDQALETIRNRIDKLGVA 171 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E I++ G RIL+QLPG D R + +L +TA++ F + + R ++ Sbjct: 172 EPDIRKQGEKRILVQLPGVTDTQRAKDILVSTAQLQFRLLDDRQDQVRDYINRRPPPGTE 231 Query: 238 G--------------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283 YLV+ KV ++G +L A AN + +PVV I F++ G +F Sbjct: 232 ILYSKHVDAQGRVSSRPYLVKKKVLLTGEYLEKAYANMQGQFSEPVVSIEFNKKGGFKFA 291 Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343 +T +N+GKPLA+VLDGRV +APVI + I G+A I+G ++ A LA +L+AG+LP+ Sbjct: 292 RITGENVGKPLAIVLDGRVFSAPVIQEKISGGQAVITGIGNMQEASDLAIILQAGALPVS 351 Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403 L I+EER VGA LG DSI T A++ G VL+V+FM V Y GL+A+ ++ LNV+L LA Sbjct: 352 LKILEERTVGASLGKDSIKTSTNAMLIGFVLVVVFMAVYYMGAGLIANIALILNVVLILA 411 Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463 L+LL ATLTLP IAGI+L IG+AVD+N+L+ ERIREE R ++ ++D GFS+A TI Sbjct: 412 SLALLDATLTLPGIAGIILTIGMAVDANVLIFERIREEIRTGKAPAFAVDSGFSKATITI 471 Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 D+N+T +A VL FG G V+GFA+T+ I SMFTAI + R + + + Y+ ++ + Sbjct: 472 LDANVTTFVAAFVLLQFGTGPVKGFAVTLCFGIAASMFTAIVVSRLIFDYFLYYRNVRKL 531 Query: 524 DI 525 I Sbjct: 532 SI 533 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 82/174 (47%), Gaps = 5/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 G + ++ I+ ++I + +++++ + + L A LIL++ L AL Sbjct: 361 GASLGKDSIKTSTNAMLIGFVLVVVFMAVYY-MGAGLIANIALILNVVLILASLALLDAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++++R+R+ ++ T + +D ++ + ++ Sbjct: 420 LTLPGIAGIILTIGMAVDANVLIFERIREEIR---TGKAPAFAVDSGFSKATITILDANV 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 F++ + +G + FA+ + FGI + ++I ++ I F+Y + Sbjct: 477 TTFVAAFVLLQFGTGPVKGFAVTLCFGIAASMFTAIVVSRLIFDYFLYYRNVRK 530 >gi|269468358|gb|EEZ80029.1| preprotein translocase subunit SecF [uncultured SUP05 cluster bacterium] Length = 306 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 100/291 (34%), Positives = 165/291 (56%), Gaps = 7/291 (2%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I F+ R + + S++ SI L T GL +GIDF GG + V + VDLS VR Sbjct: 7 PTIDFVGKRTYAIVFSVVLIAVSIFSLATQGLKFGIDFTGGTLIEVGYKKSVDLSKVRDT 66 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + + Q F L+RL+ Q S + + + + I+ E V Sbjct: 67 LSDAKFKGANVQYFGSTNEILIRLEPQAISSAKLSTKIIRL------LGDDVDIRRVEFV 120 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GPK+ EL G + ++ + I +LIY+ RF++ F+LG+I+ L+ D+ TLG F+L IE Sbjct: 121 GPKVGEELTNDGGLAMLYALIGILIYVAFRFEYRFSLGSISALMHDVIITLGIFSLLQIE 180 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AA+L +IGYS+ND +VV+DR+R+N L T + +I+ ++N+TL R++ TS+ Sbjct: 181 FDLTVLAAILAVIGYSLNDTIVVFDRIRENF-LSTRHVDPEKIINGALNQTLSRTIMTSV 239 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 I +L + GG +I SFA+ + G+++ SSI++A+ ++L + + Sbjct: 240 TTLIVLLALFFLGGEIIHSFALALLIGVIIGTYSSIYVASSMILTMGITKE 290 >gi|255262055|ref|ZP_05341397.1| protein-export membrane protein SecF [Thalassiobium sp. R2A62] gi|255104390|gb|EET47064.1| protein-export membrane protein SecF [Thalassiobium sp. R2A62] Length = 324 Score = 227 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 178/307 (57%), Gaps = 9/307 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P+ F +GIS L + + GLN+GIDFKGG + + Sbjct: 1 MRLRLVPETTNWDFFSRSKLWLGISALMMVLAFASFMIQGLNFGIDFKGGTTIRTQSTEA 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD+ V R +E+L +GDI+ ++R+Q Q G+ ++ V + Sbjct: 61 VDVGVYRDAIEALDLGDITITQVFDPTFGPDKHVTMLRIQAQEGEESVGNALVTNVGTAL 120 Query: 643 TEIVPLST--IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + P + E VGPK+S ELI+ ++ V+++ A+LIYIW+RF+W FALGA+ L Sbjct: 121 LAVDPGLQLPFASVESVGPKVSGELIKTAVIAVLLAIAAVLIYIWLRFEWQFALGAVAAL 180 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + D+ T+G F+ I+F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y +++ Sbjct: 181 VHDVILTIGVFSAVQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKK-DLKEV 239 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ++ SINETL R+V TS+ ++++ + V GG VI F M +G++V SS+F+A+ +L Sbjct: 240 LNLSINETLSRTVMTSVTTLLALVSLYVLGGDVIRGFVFAMIWGVIVGTYSSVFVASAML 299 Query: 821 LFIYDWR 827 L++ R Sbjct: 300 LWLGVKR 306 >gi|56697179|ref|YP_167543.1| preprotein translocase subunit SecF [Ruegeria pomeroyi DSS-3] gi|56678916|gb|AAV95582.1| protein-export membrane protein SecF [Ruegeria pomeroyi DSS-3] Length = 322 Score = 227 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 175/305 (57%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R LI D + F +GIS L + GLN+GIDF+GG + + Sbjct: 1 MRLKLIADDTSFDFFSRWRIWLGISALLVLVGFASFLIQGLNFGIDFRGGTTVRTESTEA 60 Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD+ + R L+ L +GD E ++R+Q Q ++ + V++ + Sbjct: 61 VDVGLYRGALDPLGLGDITITEVFDPTFGPDENVAMIRIQAQDEAEAVKSETIAKVQEAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + P + E VGPK+S ELI+ I+ V ++ +A+L+YIW+RF+W FALGA+ L+ Sbjct: 121 RSVAPDIKFVSVESVGPKVSGELIQTAILAVTLAILAVLVYIWLRFEWQFALGAVAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y +++++ Sbjct: 181 DVVLTIGIFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKY-KQKDLKEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINET+ R++ TS+ ++++ + V GG VI F M +GI+V SSIF+A+ ILL+ Sbjct: 240 LSINETMSRTLMTSITTLLALVSLYVLGGDVIRGFVFAMIWGIIVGTYSSIFVASTILLW 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|153802821|ref|ZP_01957407.1| protein-export membrane protein SecF [Vibrio cholerae MZO-3] gi|124121646|gb|EAY40389.1| protein-export membrane protein SecF [Vibrio cholerae MZO-3] Length = 315 Score = 227 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR + +S++ SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKADKMIDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ LE+ GD + QNF ++ +VRL+ + D + +++ Sbjct: 61 NLEQIRNALEAKGFGDATVQNFGSARDVMVRLRPRD-DMAGEALGNQILAAIKEGTGGNV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S + +L+Y+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + ++++ SI +TL Sbjct: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GG++I FA+ + GI V SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297 >gi|114328111|ref|YP_745268.1| protein translocase subunit secD [Granulibacter bethesdensis CGDNIH1] gi|114316285|gb|ABI62345.1| protein translocase subunit secD [Granulibacter bethesdensis CGDNIH1] Length = 326 Score = 227 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 135/306 (44%), Positives = 196/306 (64%), Gaps = 2/306 (0%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + ++PD I+FM+ RF G+ S + S+ SI L F GLN GIDF+GGI + Sbjct: 1 MFIRPMLRMVPDGTRIRFMKGRFAGLATSAVLSLISIVLFFHPGLNEGIDFRGGIVIEAR 60 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 P D +R+ L + + Q F E + L+RL QP + A + V++ + + Sbjct: 61 TQGPADFDKIRATLSAAHLEAAGVQRFGAEDDVLIRLDSQP-NEAATQQAANTVRESLAK 119 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 +P + + ++VG +SREL R G++ + +S + +L YIW+RF+W FA+GA+ TL+LD+ Sbjct: 120 ALPGTKVMRVDVVGASVSRELFRDGMLALGVSLLMILGYIWVRFEWEFAVGAVVTLVLDV 179 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 TK +GF AL IEFN +AA+LT+IGYS NDKVVVYDR+R+N++ Y T + R+LID S Sbjct: 180 TKAVGFLALTRIEFNFVIIAAILTIIGYSTNDKVVVYDRVRENLRKYRT-MPLRELIDLS 238 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 INETL R++ TSM F++ LP+A++GG + FA M FGIVV SSSIFIAAPILL + Sbjct: 239 INETLNRTLGTSMTVFLASLPLALFGGESLSGFAWTMLFGIVVGTSSSIFIAAPILLLLG 298 Query: 825 DWRAKN 830 + R + Sbjct: 299 EHRLRR 304 >gi|300114773|ref|YP_003761348.1| protein-export membrane protein SecF [Nitrosococcus watsonii C-113] gi|299540710|gb|ADJ29027.1| protein-export membrane protein SecF [Nitrosococcus watsonii C-113] Length = 312 Score = 227 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 101/294 (34%), Positives = 168/294 (57%), Gaps = 2/294 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L+ I FM R S+ + SI L GLN+GIDF GG L V +PVD Sbjct: 1 MKLLKKDFRIDFMGKRRLAFAFSLALLLISISSLIFQGLNFGIDFTGGTLLEVGYEQPVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 LS VR +LE + G Q+F ++ L+RL + + +++ +T Sbjct: 61 LSDVRRDLEEAEFGSAIVQHFGTTRDVLIRLA-PEAERNSAKFSNKVLAALQESSDNPAT 119 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGPK+ L+ +G + V+ + I +LIY+ +RF++ A+G++ L+ D+ LGF Sbjct: 120 MRRVEFVGPKVGEHLVEQGGLAVLYALIGILIYVALRFEYRLAVGSVIALVHDVIIVLGF 179 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+L +EF+LT +AA+L +IGYS+ND +VV DR+R+N + + + +I+ SIN+TL Sbjct: 180 FSLLRLEFDLTVLAAILAVIGYSLNDTIVVSDRIRENFRKIRKG-TAKQIINTSINQTLS 238 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R++ TS+ + + + ++GG I SF+ + GI+V SSI++A+P+ L + Sbjct: 239 RTIMTSLTTLLVLFALFLFGGETIHSFSTALIAGIIVGTYSSIYVASPMALALG 292 >gi|260433305|ref|ZP_05787276.1| protein-export membrane protein SecF [Silicibacter lacuscaerulensis ITI-1157] gi|260417133|gb|EEX10392.1| protein-export membrane protein SecF [Silicibacter lacuscaerulensis ITI-1157] Length = 322 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 175/305 (57%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P+ + F +GIS L + + GLN+GIDF+GG + + + Sbjct: 1 MRLKLVPENTSFDFFSRWKLWLGISGLMMVVAFTSFLLQGLNFGIDFRGGTTIRTQSAQG 60 Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 +D+ + R + L +GD E ++R+Q Q + V+ + Sbjct: 61 IDVGLYRDAITPLGLGDVSITEVFDPTFGPDENVAMIRIQAQDDAEAVSAATITAVEDAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 +VP + E VGPK+S ELI+ ++ V+++ A+L+YIW+RF+W FALGA+ L+ Sbjct: 121 RAVVPDIQFVSVESVGPKVSGELIQTAVIAVVLAIGAVLVYIWLRFEWQFALGAVAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y +++++ Sbjct: 181 DVLLTIGIFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKK-DLKEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINETL R+V TS+ ++++ + V GG VI F M +G++V SS+F+A+ ILL+ Sbjct: 240 LSINETLSRTVMTSVTTLLALVSLYVLGGDVIRGFVFAMIWGVIVGTYSSVFVASTILLW 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|299065733|emb|CBJ36909.1| SecYEG protein translocase auxillary subunit [Ralstonia solanacearum CMR15] Length = 627 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 168/515 (32%), Positives = 273/515 (53%), Gaps = 26/515 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL P +L + LGLDLRGG H +L+VD + + L Sbjct: 109 IVALNLLSGSPRWLTSIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ +G+ + + I++ F + + + + + Sbjct: 160 AGDIRTQLRDKGVRHSGIERSGTTISIKFTNPDEADRARGLLADSAR--------ELAFT 211 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + T ++ + + +V +A++Q++ + R++++G+SE IQ+ G RI++QL Sbjct: 212 VDKTADGATLTGTFTAAAMKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248 PG QD ++ + ++G TA + PN + G G L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPNATGIPRATDPVPLGDELFTQGRGAPVLLQKQVI 331 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G +N A+A FD H P VDI+ D G R +V+RDNIGK + +VL + + Sbjct: 332 FTGDRINSASAGFDQN-HNPSVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 390 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G ++E+A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 391 VATIQSELGSRFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 450 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + G I +FM++ Y +G + ++ +NV L +ALLS+L ATLTLP IA I L +G Sbjct: 451 NSAAYGFAAISVFMVLYYMLFGAFSVVALGVNVFLLIALLSMLQATLTLPGIAAIALALG 510 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NER+REE R S ++ GF RA++TI DSN+T LIA + L FG G V Sbjct: 511 MAIDANVLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFA+ L IL SMF+A+ R+++ KK Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 78/185 (42%), Gaps = 4/185 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG A+ +++ + + F ++ L +++ + Sbjct: 429 MEIIEERTIGPSLGADNIKKGFNSAAYGFAAISVFMVLYY-MLFGAFSVVALGVNVFLLI 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ S + I Sbjct: 488 ALLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGASPQMAIAAGFERA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FA+ GI+ + S++F ++ Y + Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604 Query: 829 KNARI 833 K + Sbjct: 605 KLQSL 609 Score = 38.1 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + S ++ L Sbjct: 3 RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVKVDL--------------- 47 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 ++ + LK +G+ + + + + FAD+ + D + L Sbjct: 48 ---ATQKQVEDLLAA--ANLKPDGVFFDTNGTSGS-VRVRFADTDTQLKAKDALARGLNT 101 >gi|239994270|ref|ZP_04714794.1| protein-export membrane protein SecF [Alteromonas macleodii ATCC 27126] Length = 313 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 91/290 (31%), Positives = 161/290 (55%), Gaps = 3/290 (1%) Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 + FMR R + +S + + S L + LN+G+DF GG + V +L +R+ L Sbjct: 9 TVNFMRLRIPAMVLSTVLILGSFVSLGVNSLNWGLDFTGGTLIEVGYEDAANLEGIRAQL 68 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 D QNF ++ L+R+ + G + E V + ++ E VG Sbjct: 69 NEANFEDAIVQNFGSSQDVLIRIAPRDGVKAVT--IGEQVLAALRAAGTEVDMRRIEFVG 126 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 P + EL +G + ++++ + +L+Y+ +RF+W FALG+++ L D+ TLG F++ IEF Sbjct: 127 PNVGEELTEQGGLAMLVALLCILVYVAMRFEWRFALGSVSALAHDVILTLGLFSVLQIEF 186 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 +LT +AAVL +IGYS+ND +VV DR+R+N + ++I+ S+ +TL R++ TS+ Sbjct: 187 DLTVLAAVLAVIGYSLNDTIVVCDRIRENFRKIRKGEPV-EIINISLTQTLNRTIITSLT 245 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + GG++I FA + FG+VV SS++IA+ + L + + Sbjct: 246 TVLVLVALFYKGGALIHGFATALLFGVVVGTYSSVYIASSVALALGISKE 295 >gi|241664132|ref|YP_002982492.1| preprotein translocase subunit SecD [Ralstonia pickettii 12D] gi|240866159|gb|ACS63820.1| protein-export membrane protein SecD [Ralstonia pickettii 12D] Length = 629 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 166/515 (32%), Positives = 269/515 (52%), Gaps = 24/515 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL P +L + + LGLDLRGG H +L+VD + V L Sbjct: 109 IVALNLLPGSPRWLSGAP-------FFAKPMFLGLDLRGGVHFLLQVDMNGAVTKKLDSL 161 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ +GI + + N IT+ F+ + + + + Sbjct: 162 AGDIRTQLRDKGIRHSGIDRNGNTITIKFSTPDDADRARTLLADSTR--------ELAYT 213 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + + ++ + + +V +A++Q++ + R++++G++E IQ+ G RI++QL Sbjct: 214 VDKSADSATLTGTFTAAAMKEVQDNAVKQNIVTLHNRVNELGVAEPVIQQQGPDRIVVQL 273 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248 PG QD ++ + ++G TA + PN G L++ +V Sbjct: 274 PGVQDTAKAKDIIGRTATLEARLADPNAPLVPRAGDPVPLGDELFTQGRSAPVLLQKQVI 333 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G + A+A FD + VDI+ D G R +V+RDNIGK + +VL + + Sbjct: 334 FTGDRITSASAGFDQNHNS-SVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 392 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G + E A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 393 VATIQSELGSRFQITGMGSTEAASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 452 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + + G + I +FM++ Y +G + ++ +NV L +ALLS+L ATLTLP IA I L +G Sbjct: 453 DSALYGFLAISVFMVLYYMLFGAFSVAALGVNVFLLIALLSMLQATLTLPGIAAIALALG 512 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NER+REE R S ++ GF RA++TI DSN+T LIA + L FG G V Sbjct: 513 MAIDANVLINERVREELRGGASAQMAIAAGFDRAWATILDSNVTTLIAGLALIAFGSGPV 572 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFAI L I SMF+A+ R ++ KK Sbjct: 573 RGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKKK 607 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 79/181 (43%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG + +A+ +++ + + F ++ L +++ + Sbjct: 431 MEIIEERTIGPSLGADNIKKGFDSALYGFLAISVFMVLYY-MLFGAFSVAALGVNVFLLI 489 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ S + I + Sbjct: 490 ALLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRG---GASAQMAIAAGFDRA 546 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FAI GI + S++F ++ Y + Sbjct: 547 WATILDSNVTTLIAGLALIAFGSGPVRGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKK 606 Query: 829 K 829 K Sbjct: 607 K 607 Score = 37.7 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 15/33 (45%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34 R W I+ + IG L LPNF ++ + Sbjct: 3 RYPLWKYIVILVALAIGFLYTLPNFFGEAPAVQ 35 >gi|77919488|ref|YP_357303.1| preprotein translocase subunit SecD [Pelobacter carbinolicus DSM 2380] gi|77545571|gb|ABA89133.1| protein-export membrane protein SecD [Pelobacter carbinolicus DSM 2380] Length = 533 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 195/543 (35%), Positives = 298/543 (54%), Gaps = 31/543 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN--RISLGLDLRGGSHLVLE 59 ++ + + LL +P P S P + K+ + LGLDL+GG HLVL Sbjct: 3 KSIKLRGGVVLFCLALSLLALMPTLFPNSS----PDWLKKSFDPLHLGLDLQGGMHLVLG 58 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVF-SMRQIQNKITLSFADSRFKENIADKVTLF 118 VD + V + D++ + LK++ I R +++ + D + +V F Sbjct: 59 VDVEKAVESRIDGIVDQVETELKEKDIIFKRVSRVGNDRLVVVVYD----DEAGKQVDAF 114 Query: 119 LQG--VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + + S + + + +A++Q++E +R RIDQ G+ Sbjct: 115 MADGGYRDLEPLTLETQGGYIEK----YFRFSSSAVASIQDNAVKQALETLRNRIDQFGV 170 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 SE+ +QR GS RIL+QLPG +DP R LLG TA + F V N + GV Sbjct: 171 SETVLQRQGSDRILVQLPGIKDPRRAVDLLGKTALLEFKMVAENIDLQAAAKGVLPPGTQ 230 Query: 237 --------------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282 +V DK ++G ++ A DP+ ++P V I F+ +GA+RF Sbjct: 231 LLYERQVDRRSGAVTQTPLVVYDKTVLTGDLVSDAQVRIDPRFNEPYVSIDFNAVGAKRF 290 Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342 ++T N+GK +A+VLD V +AP I + I G AQISG+F + A LA +LRAGSLP Sbjct: 291 DQITASNVGKRMAIVLDDTVYSAPFIRERISGGSAQISGSFDEQEATDLAIVLRAGSLPA 350 Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402 + I+E R VG LG DSI++G +++ G V +VL M + Y GLVA+ ++ LN++ + Sbjct: 351 PVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLAGLVANLALVLNLVFIM 410 Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462 A+LSL A+LTLP I GIVL +G+AVD+N+L+ ERIREE R +S +L+ G+S+A+ T Sbjct: 411 AMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSARNALEAGYSKAFLT 470 Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 I D+NIT LIA +VLF FG G V+GFA+T+ + I S+FTAI + R + F + ++K Sbjct: 471 IMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFFLERYQVKR 530 Query: 523 IDI 525 + I Sbjct: 531 LSI 533 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 99/243 (40%), Gaps = 6/243 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ +V + L S + D T + +++ Sbjct: 289 RFDQITASNVGKRMAIVLDDTVYSAPFIRERISGGSAQISGSFDEQEATDLAIVLRAGSL 348 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 VGP + + I +GI VII +A+++ + I + L A L+L+ Sbjct: 349 PAPVTILENR--TVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNL-AGLVANLALVLN 405 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + + +L L + ++ +G +V+ V++Y+R+R+ ++L S R+ ++ Sbjct: 406 LVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRL---GKSARNALEA 462 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ + ++ I+ L + +G + FA+ ++ GI + ++IF++ I F Sbjct: 463 GYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFF 522 Query: 824 YDW 826 + Sbjct: 523 LER 525 >gi|242279108|ref|YP_002991237.1| preprotein translocase subunit SecD [Desulfovibrio salexigens DSM 2638] gi|242122002|gb|ACS79698.1| protein-export membrane protein SecD [Desulfovibrio salexigens DSM 2638] Length = 533 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 189/528 (35%), Positives = 286/528 (54%), Gaps = 22/528 (4%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W ++L ++ G+ LP+ LP +P ++ISLGLDL+GG HL L VD D Sbjct: 6 RWKIVLTLLVVVFGVSYLLPS-LPAVQNSGMARFLPDDKISLGLDLKGGIHLTLGVDMDK 64 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVN 123 ++ L D+L++ ++EG+ V +I K+ + V + Sbjct: 65 AMDNNLARMGDDLKAVAREEGVIVLKPTVLKGERIEAVLLKEAQKDKLEKLVKDTFGNL- 123 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 + + + + ++Q+++ IR RIDQ G++E I++ Sbjct: 124 -----TILSTAVKPDGKVTYVFAPTPEYKKYLTKLTMDQAIKTIRNRIDQFGVAEPDIRK 178 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR------------ 231 +RI +QLPG QDP R +++G TA + F V + G+ Sbjct: 179 QQGNRIQVQLPGMQDPERAIKIIGKTAHLEFKLVDDVADLEKAQKGIVAPGRELTVIMHR 238 Query: 232 -FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +++ ++G ++ A FD +P V ++F+ GAR F VT +NI Sbjct: 239 LPDGSYIEKPIVLKKDAMLTGEYITDAQTRFDQFN-QPYVTLNFNSRGARIFERVTGENI 297 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 K +A+VLDG+V +AP I I G+A I+G++T E A LA +LRAGSLP + I+E+R Sbjct: 298 KKRMAIVLDGKVYSAPTIQDKIAGGRASITGSYTTEEAHDLAIVLRAGSLPAPVKILEQR 357 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG LG +SI KG A V G VL+++FM+V YG G+VAD + LNV+L LA L+ GA Sbjct: 358 TVGPSLGQESIDKGISAAVVGSVLVLVFMLVYYGFAGIVADVVLVLNVVLILAGLAAFGA 417 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAGI+L IG+AVD+N+++ ERIREE R+ + ++ G+SRA TI D+NIT Sbjct: 418 TLTLPGIAGIILTIGMAVDANVIIFERIREELRRGLTAKAAIVEGYSRATLTILDANITT 477 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 +IA V+L+ FG G VRGFA+T+ L I+ SMFTAI + R + + Sbjct: 478 VIAAVILYQFGTGPVRGFAVTLTLGIITSMFTAIFVTRILFDLYTSKR 525 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 110/250 (44%), Gaps = 5/250 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 V ++ + + G + +K R + + L +V + + Sbjct: 287 RIFERVTGENIKKRMAIVLDGKVYSAPTIQDKIAGGRASITGSYTTEEAHDLAIVLRAGS 346 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 P+ ++ + GP + +E I KGI ++ ++ +L+++ + + + + A L+L+ Sbjct: 347 LPAPVKILEQRTV-GPSLGQESIDKGISAAVVGSVLVLVFMLVYYGF-AGIVADVVLVLN 404 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + L A FG L +A ++ IG +V+ V++++R+R+ ++ ++ + I + Sbjct: 405 VVLILAGLAAFGATLTLPGIAGIILTIGMAVDANVIIFERIREELR---RGLTAKAAIVE 461 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + + ++ I+ + + +G + FA+ + GI+ + ++IF+ + Sbjct: 462 GYSRATLTILDANITTVIAAVILYQFGTGPVRGFAVTLTLGIITSMFTAIFVTRILFDLY 521 Query: 824 YDWRAKNARI 833 RA +A + Sbjct: 522 TSKRAADAPL 531 >gi|15640763|ref|NP_230393.1| preprotein translocase subunit SecF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591449|ref|ZP_01678725.1| protein-export membrane protein SecF [Vibrio cholerae 2740-80] gi|121729718|ref|ZP_01682159.1| protein-export membrane protein SecF [Vibrio cholerae V52] gi|147673073|ref|YP_001216229.1| preprotein translocase subunit SecF [Vibrio cholerae O395] gi|153216241|ref|ZP_01950341.1| protein-export membrane protein SecF [Vibrio cholerae 1587] gi|153818828|ref|ZP_01971495.1| protein-export membrane protein SecF [Vibrio cholerae NCTC 8457] gi|153822724|ref|ZP_01975391.1| protein-export membrane protein SecF [Vibrio cholerae B33] gi|153824549|ref|ZP_01977216.1| protein-export membrane protein SecF [Vibrio cholerae MZO-2] gi|153829383|ref|ZP_01982050.1| protein-export membrane protein SecF [Vibrio cholerae 623-39] gi|227080923|ref|YP_002809474.1| protein-export membrane protein SecF [Vibrio cholerae M66-2] gi|229505642|ref|ZP_04395152.1| protein-export membrane protein SecF [Vibrio cholerae BX 330286] gi|229510686|ref|ZP_04400165.1| protein-export membrane protein SecF [Vibrio cholerae B33] gi|229513117|ref|ZP_04402583.1| protein-export membrane protein SecF [Vibrio cholerae TMA 21] gi|229517808|ref|ZP_04407252.1| protein-export membrane protein SecF [Vibrio cholerae RC9] gi|229523433|ref|ZP_04412840.1| protein-export membrane protein SecF [Vibrio cholerae TM 11079-80] gi|229525390|ref|ZP_04414795.1| protein-export membrane protein SecF [Vibrio cholerae bv. albensis VL426] gi|229530126|ref|ZP_04419516.1| protein-export membrane protein SecF [Vibrio cholerae 12129(1)] gi|229608660|ref|YP_002879308.1| preprotein translocase subunit SecF [Vibrio cholerae MJ-1236] gi|254225009|ref|ZP_04918623.1| protein-export membrane protein SecF [Vibrio cholerae V51] gi|254285462|ref|ZP_04960426.1| protein-export membrane protein SecF [Vibrio cholerae AM-19226] gi|254847881|ref|ZP_05237231.1| protein-export membrane protein SecF [Vibrio cholerae MO10] gi|255744551|ref|ZP_05418502.1| protein-export membrane protein SecF [Vibrio cholera CIRS 101] gi|262161315|ref|ZP_06030426.1| protein-export membrane protein SecF [Vibrio cholerae INDRE 91/1] gi|262190473|ref|ZP_06048724.1| protein-export membrane protein SecF [Vibrio cholerae CT 5369-93] gi|262402872|ref|ZP_06079433.1| protein-export membrane protein SecF [Vibrio sp. RC586] gi|297581143|ref|ZP_06943067.1| protein-export membrane protein SecF [Vibrio cholerae RC385] gi|298499123|ref|ZP_07008930.1| protein-export membrane protein SecF [Vibrio cholerae MAK 757] gi|9655189|gb|AAF93909.1| protein-export membrane protein SecF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546700|gb|EAX56879.1| protein-export membrane protein SecF [Vibrio cholerae 2740-80] gi|121628535|gb|EAX61018.1| protein-export membrane protein SecF [Vibrio cholerae V52] gi|124114386|gb|EAY33206.1| protein-export membrane protein SecF [Vibrio cholerae 1587] gi|125622396|gb|EAZ50716.1| protein-export membrane protein SecF [Vibrio cholerae V51] gi|126510610|gb|EAZ73204.1| protein-export membrane protein SecF [Vibrio cholerae NCTC 8457] gi|126519755|gb|EAZ76978.1| protein-export membrane protein SecF [Vibrio cholerae B33] gi|146314956|gb|ABQ19495.1| protein-export membrane protein SecF [Vibrio cholerae O395] gi|148875103|gb|EDL73238.1| protein-export membrane protein SecF [Vibrio cholerae 623-39] gi|149741767|gb|EDM55796.1| protein-export membrane protein SecF [Vibrio cholerae MZO-2] gi|150424324|gb|EDN16261.1| protein-export membrane protein SecF [Vibrio cholerae AM-19226] gi|227008811|gb|ACP05023.1| protein-export membrane protein SecF [Vibrio cholerae M66-2] gi|227012568|gb|ACP08778.1| protein-export membrane protein SecF [Vibrio cholerae O395] gi|229333900|gb|EEN99386.1| protein-export membrane protein SecF [Vibrio cholerae 12129(1)] gi|229338971|gb|EEO03988.1| protein-export membrane protein SecF [Vibrio cholerae bv. albensis VL426] gi|229339796|gb|EEO04811.1| protein-export membrane protein SecF [Vibrio cholerae TM 11079-80] gi|229344523|gb|EEO09497.1| protein-export membrane protein SecF [Vibrio cholerae RC9] gi|229350010|gb|EEO14964.1| protein-export membrane protein SecF [Vibrio cholerae TMA 21] gi|229350651|gb|EEO15592.1| protein-export membrane protein SecF [Vibrio cholerae B33] gi|229357865|gb|EEO22782.1| protein-export membrane protein SecF [Vibrio cholerae BX 330286] gi|229371315|gb|ACQ61738.1| protein-export membrane protein SecF [Vibrio cholerae MJ-1236] gi|254843586|gb|EET22000.1| protein-export membrane protein SecF [Vibrio cholerae MO10] gi|255737582|gb|EET92976.1| protein-export membrane protein SecF [Vibrio cholera CIRS 101] gi|262029065|gb|EEY47718.1| protein-export membrane protein SecF [Vibrio cholerae INDRE 91/1] gi|262033645|gb|EEY52134.1| protein-export membrane protein SecF [Vibrio cholerae CT 5369-93] gi|262351654|gb|EEZ00787.1| protein-export membrane protein SecF [Vibrio sp. RC586] gi|297534459|gb|EFH73296.1| protein-export membrane protein SecF [Vibrio cholerae RC385] gi|297543456|gb|EFH79506.1| protein-export membrane protein SecF [Vibrio cholerae MAK 757] gi|327483531|gb|AEA77938.1| Protein-export membrane protein SecF [Vibrio cholerae LMA3894-4] Length = 315 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 165/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR + +S++ SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKADKMIDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +RS LE+ GD + QNF ++ +VRL+ + D + +++ Sbjct: 61 NLEQIRSALEAKGFGDATVQNFGSARDVMVRLRPRD-DMAGEALGNQILAAIKEGTGGNV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S + +L+Y+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + ++++ SI +TL Sbjct: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GG++I FA+ + GI V SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297 >gi|291278528|ref|YP_003495363.1| preprotein translocase subunit F [Deferribacter desulfuricans SSM1] gi|290753230|dbj|BAI79607.1| preprotein translocase subunit F [Deferribacter desulfuricans SSM1] Length = 299 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 113/299 (37%), Positives = 174/299 (58%), Gaps = 1/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F +I I FM IS L + SI ++FT G N GIDF GG + V + P Sbjct: 1 MFEIIKPGTKIDFMGKSKLFFIISGLLVLLSIVIIFTKGFNLGIDFAGGTVIQVRFDSPP 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 L ++R N++ L +GD+ QNF E+ L+R++ D A ++ + Sbjct: 61 KLDLLRENIKKLNLGDVVIQNFGDEREVLIRVEKTNQDLNAVANDIKKALSG-SFKGNKF 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP++ EL +K + VI + I +LIY+ +RF++ F+LGA+ L D+ TLG Sbjct: 120 IVERVEQVGPQVGSELQKKATMAVIYALIGILIYVTVRFEFIFSLGAVLALFHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L E NL VAAVLT++GYS+ND +VVYDR+R+ M+ T I+ DLI++SINETL Sbjct: 180 AFSLASKEINLPIVAAVLTIVGYSLNDTIVVYDRIRERMRNSTAKINLIDLINQSINETL 239 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS F++VL + ++G VI +F+ + GI+V SSI IA+ ++ I + + Sbjct: 240 SRTLLTSFTTFLAVLALYLFGSEVIKNFSFALLVGIIVGTYSSIGIASALVYSIKNIKK 298 >gi|325268061|ref|ZP_08134707.1| protein-export membrane protein SecD [Kingella denitrificans ATCC 33394] gi|324980446|gb|EGC16112.1| protein-export membrane protein SecD [Kingella denitrificans ATCC 33394] Length = 619 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 286/507 (56%), Gaps = 25/507 (4%) Query: 29 QSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85 Q+ + P + K + LGLDLRGG H ++VD + L Y+ + R L+++ Sbjct: 102 QNQIANSPEWLEKIGARPMFLGLDLRGGVHFTMQVDMKAALEKTLDRYAGDARRTLRQQR 161 Query: 86 IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 I ++R+ N + + F D+ + + ++ ++G +T+ +++I Sbjct: 162 IRTGTIRKSGNSLIIPFQDAADIQKVLPELNNMMEGAQ------------LTSEGTQLTI 209 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 L + + Q+ S A++Q++ + R++++G +E IQ+ G+ RI++QLPG D ++ + + Sbjct: 210 TLPETLLAQIRSDAVKQNINTLHNRVNELGTAEPVIQQAGADRIVVQLPGMTDTAKAKDI 269 Query: 206 LGTTAKMSFHKVL------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 +G TA + V + L D++GN YLV +VE++G ++N A A Sbjct: 270 IGRTATLEVRMVSTDPALMEQAKQGNIPADYELLTDAEGNGYLVSKQVELTGDNINSAQA 329 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSG 315 F ++P VD++ D G+R F ++T N GK +A+VL + V+TAP IN+ I G Sbjct: 330 GFSHNDNRPAVDLTLDNAGSRIFGDLTSANKGKIMAMVLIDQGKSEVITAPRINEPILGG 389 Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375 + QI+G ++ A +A +LRAGSL + IVEER +G LG+++I KG + V G + Sbjct: 390 RVQITGMESVAAANDVALLLRAGSLAAPMEIVEERTIGPSLGAENISKGIHSTVWGFAAV 449 Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435 LFM+V Y +G+ + ++ N++ A+LS L ATLTLP IA + L +G+A+DSN+L+N Sbjct: 450 ALFMMVYYRLFGVFSSIALSANLLFLFAILSALQATLTLPGIAAMALTLGMAIDSNVLIN 509 Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495 ERIREE + ++ G+ A+ TI DSN+T+LIA + L FG G VRGFAI L Sbjct: 510 ERIREELHAGKKPQAAIKEGYDHAWDTILDSNLTSLIAGIALLIFGSGPVRGFAIVHCLG 569 Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKS 522 I+ S+++++ + RA++ ++ Sbjct: 570 IMTSIYSSVVVSRALVNLWYGSRRKLK 596 Score = 145 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 84/212 (39%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + E I KGI + A+ Sbjct: 391 VQITGMESVAAANDVALLLRAGSLAAPMEIVEERTIGPSLGAENISKGIHSTVWGFAAVA 450 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + ++ F + + L ++ + L +AA+ +G +++ V++ Sbjct: 451 LFMMVYYRL-FGVFSSIALSANLLFLFAILSALQATLTLPGIAAMALTLGMAIDSNVLIN 509 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ + + I + + + +++ + I+ + + ++G + FAI Sbjct: 510 ERIREELHAGKK---PQAAIKEGYDHAWDTILDSNLTSLIAGIALLIFGSGPVRGFAIVH 566 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + SS+ ++ ++ Y R K I Sbjct: 567 CLGIMTSIYSSVVVSRALVNLWYGSRRKLKHI 598 >gi|327398934|ref|YP_004339803.1| protein-export membrane protein SecF [Hippea maritima DSM 10411] gi|327181563|gb|AEA33744.1| protein-export membrane protein SecF [Hippea maritima DSM 10411] Length = 321 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 91/304 (29%), Positives = 161/304 (52%), Gaps = 2/304 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 I I I F+ + IS++ + + L G GI+FKGG + + +PV Sbjct: 1 MIQFIKPGILIDFVSKFKVAIAISLILIVIGMGHLIWKGPKLGIEFKGGTSIQLEFEKPV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV-PL 648 ++ +R +++ + S G + + + S + +K + Sbjct: 61 NVVDLRGAIKNSRFFADSRIQSIGGSSKRYIVYTKVSTSSTTESIESKLKSLLDAKFKGS 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I ++VGPK+ +E KG++ + +S IA+L+YI IRF++ FA+GAI L+ D+ T+ Sbjct: 121 YKILEVDMVGPKVGKEFRDKGLIAIALSLIAILVYISIRFQYRFAVGAILALLHDVLITV 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 GF ++FG EF L VAA+LT++GYSVND +V++DR+R+ +K ++S + I++ ++ET Sbjct: 181 GFLSIFGYEFTLDVVAAILTIVGYSVNDTIVIFDRIREKVKTN-RNLSNVEAINRGVSET 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ T+ VL + ++GG + + + GI+ SSIFIA+P+LL Sbjct: 240 LSRTILTAGTTLFVVLSLYLFGGHALKGMSFALLVGIISGTYSSIFIASPVLLMFKGALI 299 Query: 829 KNAR 832 + Sbjct: 300 PQKK 303 >gi|296284696|ref|ZP_06862694.1| preprotein translocase subunit SecD [Citromicrobium bathyomarinum JL354] Length = 532 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 184/535 (34%), Positives = 297/535 (55%), Gaps = 18/535 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W I + + A+P+F + + FP ++P ++LGLDL GGSH++LE Sbjct: 2 LEFPRWRKIWLWALTLVVAACAIPSFFSIANIP-FPRSLPDPTVNLGLDLAGGSHILLEA 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 L+ + +R+ ++ I + + +++ D + + +T Sbjct: 61 QPAQVAAQRLENLEESVRTAMRDASPQIRIGDVSTRGGRLSFMLDDPSEIDRAREVLTPL 120 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + G ++ L I + + +D+ ++ A++ + +++R+RID++G E Sbjct: 121 MNGTGL-----TRQWELSVVDTSRIVLTPTAQGLDEAVTQAMDSATDVVRRRIDELGTRE 175 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD- 237 TI R G RI++Q+PG QDP +L++LLG TAK+ F V G+ Sbjct: 176 PTILRQGDTRIVVQVPGLQDPEQLKELLGQTAKLEFKLVDQEALPSDVAEGIAPPGSEIF 235 Query: 238 ---------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 G V I G L A A DP+ + +V+I FD G +RF ++T Sbjct: 236 PFAEGSAFEGTSLAVRRLGGIQGDSLVNAQAGVDPQDNSNIVNIQFDSQGGQRFAQLTTQ 295 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 N+GKP A++LDG VL+AP IN+ I G A+ISG FT ++A LA LR+G+LP+ L+IVE Sbjct: 296 NVGKPFAIILDGEVLSAPNINEPIRGGAARISGGFTADSANALAISLRSGALPVDLSIVE 355 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER VG DLG+DSI G A+ G +L+V MI YG++G+ A ++ +NVI+ L +++ L Sbjct: 356 ERTVGPDLGADSIRAGLLAMGIGSILVVALMIATYGRFGVYATCALVINVIMILGIMAAL 415 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 TLTLP IAG VL IG AVD+N+L+NERIREE ++ + V +++ G+ A I+D+NI Sbjct: 416 NTTLTLPGIAGFVLTIGAAVDANVLINERIREERKRGRRVVTAVENGYREASRAIYDANI 475 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 T IA V+LF FG G +RGFA+ + + + S+FT +++ R + ++ K+ + I Sbjct: 476 TNFIAGVLLFLFGSGPIRGFAVVLIIGLFTSVFTGVTMTRMWVAGWLKAKRPREI 530 Score = 124 bits (311), Expect = 6e-26, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 73/175 (41%), Gaps = 8/175 (4%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + IR G++ + I +I ++ + + F + A L++++ LG A Sbjct: 360 GPDLGADSIRAGLLAMGIGSILVVALMIATYG-RFGVYATCALVINVIMILGIMAALNTT 418 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A + IG +V+ V++ +R+R+ K ++ E ++ Sbjct: 419 LTLPGIAGFVLTIGAAVDANVLINERIREERKRGRR---VVTAVENGYREASRAIYDANI 475 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 FI+ + + ++G I FA+ + G+ +S+F + K R Sbjct: 476 TNFIAGVLLFLFGSGPIRGFAVVLIIGL----FTSVFTGVTMTRMWVAGWLKAKR 526 >gi|120613275|ref|YP_972953.1| preprotein translocase subunit SecD [Acidovorax citrulli AAC00-1] gi|120591739|gb|ABM35179.1| protein-export membrane protein SecD [Acidovorax citrulli AAC00-1] Length = 632 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 169/514 (32%), Positives = 280/514 (54%), Gaps = 21/514 (4%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 I N + +S + +A+ + LGLDLRGG H +L+VD + + ++ +LR+ Sbjct: 104 YIVALNLVSRSP--AWLTALHAQPVYLGLDLRGGVHFMLQVDMQAALTKKAESFAGDLRT 161 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 F++ I + + I + D + ++ + + + ++ Sbjct: 162 FMRDRNIRHGGISRDGQTIEVRLRDEAAATATRNLISDQFPDLVATSSPGGDGVIV---- 217 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + + +V A++Q++ + RI+++G++E IQ+ G+ RI++QLPG QD Sbjct: 218 ----RATIKPEALRKVQDQALKQNITTLHNRINELGVAEPVIQQQGTDRIVVQLPGVQDT 273 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDSDGNQYLVEDKVEISGI 252 ++ + +LG TA + V + +G G D +G +V+ +V ++G Sbjct: 274 AKAKDILGRTATLEVRMVDESTEARGAERGSGPVPFGSERYPDRNGQFIIVKKQVILTGE 333 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308 +L A FD +T +P V+++ D GAR F ++TR+NIGK + G V+TAPVI Sbjct: 334 NLTDAQPGFDGQTQEPTVNLTLDAKGARIFKDITRENIGKRMAIVLFEKGKGEVVTAPVI 393 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 I G+ QISG T A + +LRAGSL + I+EE +G LG+D+I +G ++ Sbjct: 394 RSEIGGGRVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEFTIGPSLGADNISRGIHSV 453 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 V G+V I +FM V Y +G+ + ++ +NV++ +A+LS+L ATLTLP IA + L +G+A+ Sbjct: 454 VWGMVAIAVFMCVYYALFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAI 513 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 DSN+L+NERIREE R + ++ G+ RA++TI DSN+T LIA + L FG G VRGF Sbjct: 514 DSNVLINERIREELRAGVAPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGSGPVRGF 573 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 A+ L IL SMF+A+ R ++ KK Sbjct: 574 AVVHCLGILTSMFSAVFFSRGLVNLWYGRKKKLK 607 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 87/212 (41%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I +GI V+ +A+ Sbjct: 402 VQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEFTIGPSLGADNISRGIHSVVWGMVAIA 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + + F + + L +++ + ++ L +AA+ +G +++ V++ Sbjct: 462 VFMCVYYAL-FGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ ++ + I + +++ I+ L + +G + FA+ Sbjct: 521 ERIREELRA---GVAPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++F + ++ Y + K + Sbjct: 578 CLGILTSMFSAVFFSRGLVNLWYGRKKKLKSV 609 Score = 47.8 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 31/135 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + ++ +G+L +LPN ++ ++V Sbjct: 3 RYPVWKYAILVIVLLVGILYSLPNVFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + L+ GI + N + F + D + L Sbjct: 38 SAKASVKVDASLQRRVEEALQGAGITPDVVSLDGNSVRARFDTPDTQLKAKDVIQKAL-- 95 Query: 122 VNSKLNVDPKKNLLV 136 + +V Sbjct: 96 ----VPDAADPQYIV 106 >gi|302879495|ref|YP_003848059.1| protein-export membrane protein SecD [Gallionella capsiferriformans ES-2] gi|302582284|gb|ADL56295.1| protein-export membrane protein SecD [Gallionella capsiferriformans ES-2] Length = 603 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 172/512 (33%), Positives = 289/512 (56%), Gaps = 21/512 (4%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 + N LP+S ++ + M + LGLDLRGG H +L+VD ++ L+ + ++RS Sbjct: 99 YVVALNLLPRSP--QWLTDMHALPMYLGLDLRGGVHFLLQVDMKAALDKALEAATGDIRS 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L++E + + + N + + F D+ + ++ L+ Sbjct: 157 ALREENVAYSGVSREGNTLLVKFRDAAARAKGEAQLKQRFS----------DYALVDKEL 206 Query: 140 EKEISIVLS--QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 E + + ++ A++Q++ +R R++++G++E IQ+ G+ R+++QLPG Q Sbjct: 207 NGEFLLQATLKPEAEHRIGESAVQQNLLTLRNRVNELGVAEPVIQQQGADRVVVQLPGVQ 266 Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGF---MFGVRFLRDSDGNQYLVEDKVEISGIHL 254 D +R + +LG TA + V + FG +D +G LV+ +V ++G + Sbjct: 267 DTARAKDILGRTATLEVRMVDDEHQVGAGGVAPFGTEMFKDREGVSILVKKQVMLTGERI 326 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQ 310 N A FD + ++ V I+ D +GAR+F + TR+N+GK + G ++TAPVI + Sbjct: 327 NDAQPGFDNQNNEAAVHINLDGVGARKFKDATRENVGKRMAIILFEKGRGEIVTAPVIRE 386 Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370 I G+ QISG T E A A +LRAG+L + IVEER VG LG+D+I +G + Sbjct: 387 EIGGGRVQISGRMTTEEAQDTALLLRAGALAAPMEIVEERTVGPSLGADNIARGFNSTKI 446 Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430 G +LI +FM+ Y +G ++ ++ N++L +ALLS++ ATLTLP +AGI L +G+A+DS Sbjct: 447 GFMLIAVFMVAYYLMFGTISVVALAANLLLLIALLSMMQATLTLPGMAGIALTLGMAIDS 506 Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490 N+L+NERIREE R S ++ G+ A++TI DSNIT LIA + LF FG G ++GFA+ Sbjct: 507 NVLINERIREELRNGISPQAAIHAGYDNAFATIVDSNITNLIAGIALFLFGSGPIKGFAV 566 Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 + L IL SMF+++ + RA++ + + + Sbjct: 567 VLCLGILTSMFSSVLVSRAIVNLVYGRRARLT 598 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 86/208 (41%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + + I VGP + + I +G I + + Sbjct: 393 VQISGRMTTEEAQDTALLLRAGALAAPMEIVEERTVGPSLGADNIARGFNSTKIGFMLIA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + F ++ L ++ + ++ L +A + +G +++ V++ Sbjct: 453 VFMVAYY-LMFGTISVVALAANLLLLIALLSMMQATLTLPGMAGIALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ IS + I + V +++ I+ + + ++G I FA+ + Sbjct: 512 ERIREELR---NGISPQAAIHAGYDNAFATIVDSNITNLIAGIALFLFGSGPIKGFAVVL 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ ++ I+ +Y RA+ Sbjct: 569 CLGILTSMFSSVLVSRAIVNLVYGRRAR 596 Score = 44.3 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + +GL+ LPNF +S + +P L Sbjct: 3 RYPLWKYLLILAVLLVGLIYTLPNFFGESPAVQ---ILP-----------------LRAS 42 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + + LK + + N I FAD+ + D + L Sbjct: 43 MKADIA-----LLGRVEAALKAGNLNTEMVALDGNSIKARFADTDLQLKAKDLLKAQL 95 >gi|258619942|ref|ZP_05714982.1| protein export protein SecF [Vibrio mimicus VM573] gi|262165056|ref|ZP_06032793.1| protein-export membrane protein SecF [Vibrio mimicus VM223] gi|258587675|gb|EEW12384.1| protein export protein SecF [Vibrio mimicus VM573] gi|262024772|gb|EEY43440.1| protein-export membrane protein SecF [Vibrio mimicus VM223] Length = 315 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR + +S++ SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKADKMIDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ LE+ GD + QNF ++ +VRL+ + D + +++ Sbjct: 61 NLEQIRTALEAKGFGDATVQNFGSARDVMVRLRPRD-DMAGEALGNQILAAIKEGTGGNV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S + +L+Y+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + ++++ SI +TL Sbjct: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GG++I FA+ + GI V SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297 >gi|332992258|gb|AEF02313.1| protein-export membrane protein SecF [Alteromonas sp. SN2] Length = 313 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 165/298 (55%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L+ I FMR R + +S + + S L + LN+G+DF GG + V + Sbjct: 1 MQLLKLSETINFMRLRVPAMVLSTILILGSFVSLGVNSLNWGLDFTGGTLIEVGYEDSAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R+ L + + D QNF + L+R+ + G A + E V + Sbjct: 61 LESIRALLNNAEFEDAIVQNFGSSQEVLIRIAPRDGVKAAT--IGEQVLAALRADGTTVD 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP + EL +G + ++++ I +L+Y+ +RF+W FALG+++ L D+ TLG Sbjct: 119 MRRIEFVGPNVGEELTEQGGLAMLVALICILVYVAMRFEWRFALGSVSALAHDVILTLGL 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F++ IEF+LT +AAVL +IGYS+ND +VV DR+R+N + D+I+ S+ +TL Sbjct: 179 FSILQIEFDLTVLAAVLAVIGYSLNDTIVVSDRIRENFRKIRKGEPI-DIINISLTQTLN 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS+ + ++ + GG++I FA + FG+VV SS++IA+ + L + + Sbjct: 238 RTIITSLTTVLVLVALFYKGGALIHGFATALLFGVVVGTYSSVYIASSVALALGISKE 295 >gi|332141984|ref|YP_004427722.1| protein-export membrane protein SecF [Alteromonas macleodii str. 'Deep ecotype'] gi|327552006|gb|AEA98724.1| protein-export membrane protein SecF [Alteromonas macleodii str. 'Deep ecotype'] Length = 313 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 93/298 (31%), Positives = 162/298 (54%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L+ + FMR R + +S + + S L + LN+G+DF GG + V D Sbjct: 1 MQLLKLSETVNFMRLRIPAMVLSTVLILGSFVSLGVNSLNWGLDFTGGTLIEVGYEDSAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R L D QNF ++ L+R+ + G + E V + Sbjct: 61 LEAIRVQLNESNFEDAIVQNFGSSQDVLIRIAPRDGVKAVT--IGEQVLAALRADGTSVD 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP + EL +G + ++++ + +L+Y+ +RF+W FALG+++ L D+ TLG Sbjct: 119 MRRIEFVGPNVGEELTEQGGLAMLVALLCILVYVAMRFEWRFALGSVSALAHDVILTLGL 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F++ IEF+LT +AAVL +IGYS+ND +VV DR+R+N + ++I+ S+ +TL Sbjct: 179 FSVLQIEFDLTVLAAVLAVIGYSLNDTIVVSDRIRENFRKIRKGEPV-EIINISLTQTLN 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS+ + ++ + GG++I FA + FG+VV SS++IA+ + L + + Sbjct: 238 RTIITSLTTVLVLVALFYKGGALIHGFATALLFGVVVGTYSSVYIASSVALALGISKE 295 >gi|254293771|ref|YP_003059794.1| protein-export membrane protein SecD [Hirschia baltica ATCC 49814] gi|254042302|gb|ACT59097.1| protein-export membrane protein SecD [Hirschia baltica ATCC 49814] Length = 530 Score = 226 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 173/534 (32%), Positives = 286/534 (53%), Gaps = 16/534 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 ++ W +L + +G + LPN L P MP + LGLDL+GGS+L+LEV Sbjct: 2 LQFALWKRLLVIGVVLLGAWLCLPNLLNAGQRAGLPGFMPSETVKLGLDLKGGSYLLLEV 61 Query: 61 DEDDFVNGFLQMYSDELRSFL----KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116 D ++ L S +++ L + + + + +V Sbjct: 62 DPEELQQNRLLELSRDIQRTLIKKPNNVKFRGREVVDGGVRFRVMEP--TQIDEAKRRVR 119 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 V +++L ++ +++ S ++++ A+ S+E++R+R+D G Sbjct: 120 ELSSPVGGI---GGQQSLNISEQNGVMNVTFSSARLEELEVEALNDSIEVVRRRVDGSGT 176 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF---- 232 ++ IQR GS+RI++++PG DP+ L +L+ M+ + V + Sbjct: 177 TDPNIQRQGSNRIVLEVPGLDDPTELIELIQRAGVMTVNLVDETADASQYRLDEPRLGKV 236 Query: 233 --LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +Y+V + ++G + + ++P ++ + G + F + T ++I Sbjct: 237 KRQDAYSAREYVVHEDPILTGADFAT-ASQGFDENNRPQINFTLKGRGPKVFGDFTSEHI 295 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 A+VLDG+V++A + I SG +I+G+F I+ A +A +LRAG LP KL +VE+R Sbjct: 296 NDSFAIVLDGQVISAASVRSPILSGSGRITGSFEIQEANAIAIVLRAGELPAKLQVVEQR 355 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VGA LG DSI GT A GL L+ +FMI+ YG WG+ A S+ N++L + LS LGA Sbjct: 356 VVGAGLGEDSIRAGTTASAIGLALVAIFMILAYGLWGVFAVISLAANIMLIIGSLSGLGA 415 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAGI+L IG+AVD+N+LV ERIREE++ +S S+++G+ +A STI D+N+T Sbjct: 416 TLTLPGIAGIILTIGMAVDANVLVFERIREEHKNGRSPITSIEIGYKQASSTILDANLTT 475 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 LIA VLF+ G G V+GFA+T+G+ + S+FTA + R M +R + K + Sbjct: 476 LIAAAVLFWLGSGPVKGFAVTLGIGVFTSVFTAFVLTRMFMADWVRTVRPKKLP 529 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 80/209 (38%), Gaps = 5/209 (2%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + E+ + +VG + + IR G I + I++ Sbjct: 325 TGSFEIQEANAIAIVLRAGELPAKLQVVEQRVVGAGLGEDSIRAGTTASAIGLALVAIFM 384 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + + + + A+ +L +I +G + G L +A ++ IG +V+ V+V++R+ Sbjct: 385 ILAYGL-WGVFAVISLAANIMLIIGSLSGLGATLTLPGIAGIILTIGMAVDANVLVFERI 443 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ + S I+ + + ++ I+ + G + FA+ + G Sbjct: 444 REE---HKNGRSPITSIEIGYKQASSTILDANLTTLIAAAVLFWLGSGPVKGFAVTLGIG 500 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 + + ++ + + + ++ Sbjct: 501 VFTSVFTAFVLTRMFMADW-VRTVRPKKL 528 >gi|17547434|ref|NP_520836.1| preprotein translocase subunit SecD [Ralstonia solanacearum GMI1000] gi|17429737|emb|CAD16422.1| probable-export membrane protein secd transmembrane [Ralstonia solanacearum GMI1000] Length = 626 Score = 226 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 167/515 (32%), Positives = 273/515 (53%), Gaps = 26/515 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL P +L + LGLDLRGG H +L+VD + + L Sbjct: 109 IVALNLLSGSPRWLTAIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ +G+ + + I++ F + + + + + Sbjct: 160 AGDIRTQLRDKGVRHSGIERSGTTISIKFTNPDEADRARGLLADSAR--------ELAFT 211 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + T ++ + + +V +A++Q++ + R++++G+SE IQ+ G RI++QL Sbjct: 212 VDKTADGATLTGTFTAAAMKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248 PG QD ++ + ++G TA + PN + G G L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPNATGIPRATDPVPLGDELFTQGRGAPVLLQKQVI 331 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G +N A+A FD H P VDI+ D G R +V+RDNIGK + +VL + + Sbjct: 332 FTGDRINSASAGFDQN-HNPSVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 390 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G ++E+A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 391 VATIQSELGSRFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 450 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + G I +FM++ Y +G + ++ +NV L +A+LS+L ATLTLP IA I L +G Sbjct: 451 NSAAYGFAAISVFMVLYYMLFGAFSVVALGVNVFLLIAILSMLQATLTLPGIAAIALALG 510 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NER+REE R S ++ GF RA++TI DSN+T LIA + L FG G V Sbjct: 511 MAIDANVLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFA+ L IL SMF+A+ R+++ KK Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 78/185 (42%), Gaps = 4/185 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG A+ +++ + + F ++ L +++ + Sbjct: 429 MEIIEERTIGPSLGADNIKKGFNSAAYGFAAISVFMVLYY-MLFGAFSVVALGVNVFLLI 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ S + I Sbjct: 488 AILSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGASPQMAIAAGFERA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FA+ GI+ + S++F ++ Y + Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604 Query: 829 KNARI 833 K + Sbjct: 605 KLQSL 609 Score = 37.7 bits (85), Expect = 9.0, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 15/33 (45%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34 R W ++ + IG L LPNF ++ + Sbjct: 3 RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQ 35 >gi|194290675|ref|YP_002006582.1| preprotein translocase subunit SecD [Cupriavidus taiwanensis LMG 19424] gi|193224510|emb|CAQ70521.1| Protein-export membrane protein secD [Cupriavidus taiwanensis LMG 19424] Length = 623 Score = 226 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 163/515 (31%), Positives = 272/515 (52%), Gaps = 30/515 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + LL P +L + LGLDLRGG H +L+VD V+ L Sbjct: 109 VVALNLLSGSPRWLTSLHA---------LPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSL 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ + I + + ++T+ F ++ + ++ V Sbjct: 160 AGDARTLLRDKNIRHGGIDRDGERLTVRFNNADDASRARTLLADNVREV----------- 208 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 I ++ V A++Q++ + R++++G++E IQ+ G+ RI++QL Sbjct: 209 -AFAMDGNNIVGTFTEAARRAVQDAAVKQNITTLHNRVNELGVAEPVIQQQGADRIVVQL 267 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM-----FGVRFLRDSDGNQYLVEDKVE 248 PG QD ++ + ++G TA + V + + FG +G +++ +V Sbjct: 268 PGVQDTAKAKDIIGRTATLEARLVDNDAPRSPRPGDPIPFGSELFTQGNGAPVVLKKQVI 327 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G + A+A FD +P V+I D G R +V+R+N+ KP+A+VL + + Sbjct: 328 FTGDRIESASAGFDQNQ-QPSVNIKLDAQGGRVLRDVSRENLKKPMAIVLFEKGKGEVLT 386 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ QI+G+++ E A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 387 VATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIEKGF 446 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 ++ G I +FMI+ Y +G+ + ++ +N++L +A+LS+L ATLTLP IA I L +G Sbjct: 447 DSVAYGFAAIGVFMILYYMLFGVFSVIALGVNLLLLIAVLSMLQATLTLPGIAAIALVLG 506 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NERIREE R S ++ +GF RA++TI DSN+T LIA + L FG G V Sbjct: 507 MAIDANVLINERIREELRAGASPQMAIAVGFDRAWATILDSNVTTLIAGLALLAFGSGPV 566 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFA+ L IL SMF+A+ R ++ KK Sbjct: 567 RGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKK 601 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I KG V A+ +++ + + F + ++ L +++ + Sbjct: 425 MEIIEERTIGPSLGADNIEKGFDSVAYGFAAIGVFMILYY-MLFGVFSVIALGVNLLLLI 483 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ ++G +++ V++ +R+R+ ++ S + I + Sbjct: 484 AVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRA---GASPQMAIAVGFDRA 540 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FA+ GI+ + S++F ++ Y + Sbjct: 541 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK 600 Query: 829 K 829 K Sbjct: 601 K 601 Score = 40.4 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG++ LPNF ++ + S ++ L ++ Sbjct: 3 RYPLWKYLVILVALAIGIIYTLPNFFGEAPAVQVSSGKATVKVDL----------SMQKQ 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 ++ + + L+ +G+ + + F + + D ++ L Sbjct: 53 VEEILAQ----------NQLQPDGVFF-DISGQSGSVKARFRTTDEQLKAKDVLSRALNP 101 >gi|99080838|ref|YP_612992.1| preprotein translocase subunit SecF [Ruegeria sp. TM1040] gi|99037118|gb|ABF63730.1| protein translocase subunit secF [Ruegeria sp. TM1040] Length = 322 Score = 226 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 176/305 (57%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+ + + F R +GIS + + GLN+GIDF+GG + A + Sbjct: 1 MRLKLVREGTSFDFFRLWKLWLGISAMMVVIGFASFAIQGLNFGIDFRGGTTIRTEATQD 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642 +D+ V R + L++GDI+ ++R++ Q + V+ V+ + Sbjct: 61 LDIGVYREAIAPLELGDITITEVFDPTFDEDQHVAMIRIEAQEDGEALSSDVIAAVQGAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + P + E VGPK+S EL++ ++ V ++ A+LIYIW+RF+W FALGA+ L+ Sbjct: 121 DAVAPGIKFISVESVGPKVSGELVQTAVIAVALAIGAVLIYIWLRFEWQFALGAVAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I+F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y ++++ Sbjct: 181 DVILTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKK-PLAEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINETL R+V TS+ ++++ + V GG VI F M +G++V SSIF+A+ ILL+ Sbjct: 240 ISINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIVGTYSSIFVASTILLW 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|109897556|ref|YP_660811.1| protein-export membrane protein SecF [Pseudoalteromonas atlantica T6c] gi|109699837|gb|ABG39757.1| protein translocase subunit secF [Pseudoalteromonas atlantica T6c] Length = 313 Score = 226 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 92/298 (30%), Positives = 163/298 (54%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L+ + FM R +S L I S+ L + LN+G+DF GG Q+ + + Sbjct: 1 MQLLNMKETVGFMSLRVPAAILSALLVIGSLVSLGVNQLNWGLDFTGGTQIEMRYEGVAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L + + QN+ ++ L+R+ G + + V + P Sbjct: 61 LDAVRAELTQAGFVEPTVQNYGSSQDILIRIAPMEGVKNV--EIGDRVVAALQAADPSVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + VGP I EL +G + +++S + +L+Y+ +RF+W FALG++ L D+ TLG Sbjct: 119 KRGIAFVGPNIGDELAEQGGLAMLVSLLCILVYVAMRFEWRFALGSVVALAHDVIITLGL 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F++ +EF+LT +AAVL +IGYS+ND +VV DR+R+N + S + ++I+ S+ +TL Sbjct: 179 FSILQLEFDLTVLAAVLAVIGYSLNDTIVVSDRIRENFRKIRNSET-EEIINISLTQTLN 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS+ + ++ + GG+ I FA + FG+++ SSI++A+ + L++ R Sbjct: 238 RTIITSLTTILVLMSLFFLGGATIHGFATALLFGVIIGTYSSIYVASLVALWLGVSRE 295 >gi|85711202|ref|ZP_01042262.1| protein export protein SecD [Idiomarina baltica OS145] gi|85695115|gb|EAQ33053.1| protein export protein SecD [Idiomarina baltica OS145] Length = 614 Score = 226 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 169/522 (32%), Positives = 281/522 (53%), Gaps = 37/522 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ PS + + LGLDLRGG H ++E+D ++ + L D +RS L++E I Sbjct: 104 NLAPATPSWLKSIGAEPMKLGLDLRGGVHFLMEIDMNEAMRKILDGMKDTIRSSLREERI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ N I + + + QG ++V +++ Sbjct: 164 RYTNVSVEDNAINVELRSDEDFQQAEQYLDGRYQGY----------QMVVDAETNTVTMR 213 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +++ + + +A+ Q++ I+R R++++G++E IQR G++RI+++LPG QD +R +++L Sbjct: 214 MTEQKLAETRDYAVSQNITIMRNRVNELGVAEPVIQRQGANRIVVELPGVQDTARAKEIL 273 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V N + FG L +G L+++ V ++G H+ Sbjct: 274 GATATLEFRMVDTENDVRDAVNGRVPFGSELLPSRNGGPQLLKEDVILTGDHIVN-AGVG 332 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 + ++P V+I D +G + T+DN+GKP+A V T + + Sbjct: 333 YDEYNRPQVNIELDGVGGDKMSLATKDNVGKPMATVFMEYESTGERDAEGNLQFNKKAEV 392 Query: 322 NFTI-----------------ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + A L+ +LRAG+L + IVEER VG LG +I G Sbjct: 393 VSVATIQSRLGSSFRITGVGPQEAQNLSLLLRAGALIAPIQIVEERTVGPSLGQQNIDAG 452 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 T AI+ GLVL++LFM++ Y K+GLVAD ++ N++L + ++S++ ATLTLP +AGIVL Sbjct: 453 TQAIIWGLVLVLLFMVIYYRKFGLVADMALAANIVLIIGVMSMIPGATLTLPGMAGIVLT 512 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ ERIREE R +S ++ G+ A STI D+NIT LIA ++LF G G Sbjct: 513 VGMAVDANVLIFERIREEIRAKRSPQQAIHHGYDSALSTIADANITTLIAAIILFAVGNG 572 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFAIT+ + I+ SMFTAI RA++ + K++ + I Sbjct: 573 PVKGFAITLAIGIITSMFTAIVGTRAIVNSVWGGKRLSKLSI 614 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 95/240 (39%), Gaps = 6/240 (2%) Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + + R +LQ + + ++ Q + + ++ Sbjct: 373 ESTGERDAEGNLQFNKKAEVVSVATIQSRLGSSFRITGVGPQEAQNLSLLLRAGALIAPI 432 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I VGP + ++ I G +I + +L+++ I ++ F L A L +I +G Sbjct: 433 QIVEERTVGPSLGQQNIDAGTQAIIWGLVLVLLFMVIYYR-KFGLVADMALAANIVLIIG 491 Query: 710 FFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ G L +A ++ +G +V+ V++++R+R+ ++ S + I + Sbjct: 492 VMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIREEIRAKR---SPQQAIHHGYDSA 548 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL-FIYDWR 827 L ++ I+ + + G + FAI +A GI+ + ++I I+ R Sbjct: 549 LSTIADANITTLIAAIILFAVGNGPVKGFAITLAIGIITSMFTAIVGTRAIVNSVWGGKR 608 Score = 42.8 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + + L ALPN + + + D Sbjct: 4 KYPLWKNLLVIFVILLAALYALPNIYGEDPA-----------------------VQISAD 40 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 V+ D +R LK E I S+ Q ++ + + + + + + L Sbjct: 41 RQATVDA---ATLDLVRETLKSEDISPKSIALEQEQVLVRLSSDKEQLQAREALNKRL 95 >gi|262172185|ref|ZP_06039863.1| protein-export membrane protein SecF [Vibrio mimicus MB-451] gi|261893261|gb|EEY39247.1| protein-export membrane protein SecF [Vibrio mimicus MB-451] Length = 315 Score = 226 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR + +S++ SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKADKMIDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ LE+ GD + QNF ++ +VRL+ + D + +++ Sbjct: 61 NLEQIRTALEAKGFGDATVQNFGSARDVMVRLRPRD-DMAGEALGNQILAAIEEGTGGNV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S + +L+Y+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + ++++ SI +TL Sbjct: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GG++I FA+ + GI V SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297 >gi|95929297|ref|ZP_01312041.1| SecF protein [Desulfuromonas acetoxidans DSM 684] gi|95134795|gb|EAT16450.1| SecF protein [Desulfuromonas acetoxidans DSM 684] Length = 303 Score = 226 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 160/297 (53%), Gaps = 2/297 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPV 589 LI I + F+ R +SI+ + I L G NYG+DF GG + V + Sbjct: 1 MQLIKPDINVDFVGKRNMAFVLSIVLILIGIGSLIVKGGPNYGVDFAGGTLVQVRFEQNT 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 ++ L + + + Q F + N + + + R + + Sbjct: 61 TAGEIKKALIPNVLDNATVQQFGDDANEYLIRAQESDSGLQGLRSQILDALEPVYGAGTV 120 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E+VGP++ +EL ++G++ ++ + I +L YI RF++ FA+GAI L+ D+ TLG Sbjct: 121 DMRRIEMVGPQVGQELRKQGLMAILYAMIGILAYITWRFEFRFAVGAIVALVHDVLLTLG 180 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+LFG E +L +AA L +IGYS+ND ++VYDR+R+NM Y +++SINETL Sbjct: 181 AFSLFGKEIDLPIIAAFLAIIGYSLNDTIIVYDRIRENMGKY-HGSGVPLTVNRSINETL 239 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 R++ TS + VL + ++GG VI +FA + G++V SSIF+A+PIL+ + Sbjct: 240 SRTILTSGTTLLVVLALFLFGGGVIHNFAFALLIGVLVGTYSSIFVASPILIAWQEK 296 >gi|77462342|ref|YP_351846.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides 2.4.1] gi|126461218|ref|YP_001042332.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides ATCC 17029] gi|332560225|ref|ZP_08414547.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides WS8N] gi|77386760|gb|ABA77945.1| Protein-export membrane protein secD [Rhodobacter sphaeroides 2.4.1] gi|126102882|gb|ABN75560.1| protein-export membrane protein SecD [Rhodobacter sphaeroides ATCC 17029] gi|332277937|gb|EGJ23252.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides WS8N] Length = 554 Score = 226 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 190/553 (34%), Positives = 309/553 (55%), Gaps = 32/553 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLP------------------------QSMLDRFP 36 + W +L IC + +L A PNF + + +P Sbjct: 2 LHFPVWKRVLIWGICALAILYAAPNFFYSRVESHNDAVAAIEKAGGTATPEQTAAVGLWP 61 Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI-- 94 +P N ++LGLDLRGG+HL+ EV +D + E+R L+ V S+R+ Sbjct: 62 EWLPSNIVNLGLDLRGGAHLLAEVRVEDVYAARMDGLWPEVRDALRGLRDQVGSIRRQTA 121 Query: 95 -QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153 ++ ++ + + + Q V S + + ++ +++ + I L+ Sbjct: 122 PAGELRVAISRPEGMQAALEAARRLAQPVVSFTGMG-QNDIEISSQGDVLVIRLTDAEKT 180 Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 + S ++QS+EIIR+R+D++G E TIQR G RILIQ+PG + L+ L+GTTAK++ Sbjct: 181 AMDSRTVQQSLEIIRRRVDEVGTREPTIQRQGEDRILIQVPGIGSAAELKSLIGTTAKLT 240 Query: 214 FHKV---LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 FH V + V + G Y+++ ++G L A +FD +P V Sbjct: 241 FHPVLGRTADAQSSASGDLVLPAANEQGIFYVLDRSPVVTGEELVDAQPSFDQNN-RPAV 299 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 F+ GAR F + T NIGKP A+VLD V++APVI I G I+GNF++E + Sbjct: 300 SFRFNPSGARAFGDYTAQNIGKPFAIVLDNEVISAPVIQAHIAGGSGIITGNFSVEESTE 359 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LA +LRAG+LP ++ +EER +G +LG DSI G A + G++ +V FMI YG +G++A Sbjct: 360 LAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVAFMIASYGWFGVLA 419 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + ++ +N++ +ALLS++GATLTLP IAGIVL IG+AVD+N+L+ ERIREE R+ + Sbjct: 420 NIALAINMLAIIALLSVVGATLTLPGIAGIVLTIGVAVDANVLIYERIREELRQGKQPGR 479 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 ++++GF +A S I D+N+T + +++F G G VRGFA+T+ + I S+FTA+ + R + Sbjct: 480 AIELGFEKALSAIVDANVTTFLVALIMFLVGAGPVRGFAVTLTIGIFTSVFTAVYVTRIL 539 Query: 511 MIFIIRYKKMKSI 523 + +++ ++I Sbjct: 540 IATWFAWRRPRTI 552 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 89/208 (42%), Gaps = 4/208 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 G+ + V + + T +GP++ ++ I G I+ IA++ Sbjct: 347 IITGNFSVEESTELAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVA 406 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ + W F + A L +++ + ++ G L +A ++ IG +V+ V++Y+ Sbjct: 407 FMIASYGW-FGVLANIALAINMLAIIALLSVVGATLTLPGIAGIVLTIGVAVDANVLIYE 465 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ ++ I+ + L V ++ F+ L M + G + FA+ + Sbjct: 466 RIREELRQ---GKQPGRAIELGFEKALSAIVDANVTTFLVALIMFLVGAGPVRGFAVTLT 522 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830 GI + +++++ ++ + WR Sbjct: 523 IGIFTSVFTAVYVTRILIATWFAWRRPR 550 >gi|291613429|ref|YP_003523586.1| protein-export membrane protein SecD [Sideroxydans lithotrophicus ES-1] gi|291583541|gb|ADE11199.1| protein-export membrane protein SecD [Sideroxydans lithotrophicus ES-1] Length = 603 Score = 226 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 183/510 (35%), Positives = 293/510 (57%), Gaps = 17/510 (3%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 + N +P+S ++ +++ + LGLDLRGG H +L++D ++ L+ S ++RS Sbjct: 99 YMVALNLVPRSP--QWMASLNALPMYLGLDLRGGVHFLLQIDMKAALDKALESDSGDIRS 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L++ I + + + IT+ F D+ + D++ G+ + D ++ L Sbjct: 157 SLREADIPYSGVSRDASAITIKFRDADARSKGEDELKQRFGGLEFNTSEDGREFL----- 211 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + L Q ++ A++Q++ +R R++++G++E IQ+ G+ RI++QLPG QD Sbjct: 212 ---LLASLKQQEQIRIQESAVQQNLVTLRNRVNELGVAEPVIQQQGADRIVVQLPGVQDT 268 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF---MFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256 +R + +LG TA + V + FG +D DG LV+ V ++G +N Sbjct: 269 ARAKDILGRTATLEVRMVDDEHHLSAGGIAPFGTEIFKDRDGTPLLVKKSVILTGERIND 328 Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAI 312 A FD + ++P V I+ D +GAR+F E TR+N+GK + G V+TAPVI + I Sbjct: 329 AQPGFDSRNNEPAVHINLDAVGARKFKEATRENVGKRMAIILFEKGKGEVVTAPVIREEI 388 Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372 G+ QISG E A A +LRAG+L + IVEER VG LG+D+I +G + G Sbjct: 389 GGGRVQISGKMNTEEAKDTALLLRAGALAAPMEIVEERTVGPSLGADNIARGFHSTQIGF 448 Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432 + I +FMI Y +G V+ ++ N++L +ALLS+L ATLTLP +AGI L +G+A+DSN+ Sbjct: 449 IAIAIFMIAYYLMFGGVSVLALGANLLLLIALLSMLQATLTLPGMAGIALTLGMAIDSNV 508 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 L+NERIREE R ++ G+ A++TI DSNIT LIA + LF FG G ++GFA+ + Sbjct: 509 LINERIREELRNGVPPQMAIHAGYENAFATILDSNITTLIAGIALFMFGSGPIKGFAVVL 568 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKS 522 L IL SMF+A+ + RA++ I K + Sbjct: 569 CLGILTSMFSAVLVSRALVNLIYGRKARLN 598 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 87/212 (41%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + + I VGP + + I +G I IA+ Sbjct: 393 VQISGKMNTEEAKDTALLLRAGALAAPMEIVEERTVGPSLGADNIARGFHSTQIGFIAIA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 I++ + F ++ L ++ + ++ L +A + +G +++ V++ Sbjct: 453 IFMIAYY-LMFGGVSVLALGANLLLLIALLSMLQATLTLPGMAGIALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I + +++ I+ + + ++G I FA+ + Sbjct: 512 ERIREELR---NGVPPQMAIHAGYENAFATILDSNITTLIAGIALFMFGSGPIKGFAVVL 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++ ++ ++ IY +A+ ++ Sbjct: 569 CLGILTSMFSAVLVSRALVNLIYGRKARLNKV 600 Score = 40.4 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 16/33 (48%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34 R W +L + +GL+ ALPN ++ + Sbjct: 3 RYPLWKNLLIIVALMLGLVYALPNLYGEAPAVQ 35 >gi|309781305|ref|ZP_07676041.1| protein-export membrane protein SecD [Ralstonia sp. 5_7_47FAA] gi|308919718|gb|EFP65379.1| protein-export membrane protein SecD [Ralstonia sp. 5_7_47FAA] Length = 629 Score = 226 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 166/515 (32%), Positives = 271/515 (52%), Gaps = 24/515 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL P +L + + LGLDLRGG H +L+VD + V L Sbjct: 109 IVALNLLPGSPQWLSGAP-------FFAKPMFLGLDLRGGVHFLLQVDMNGAVTKKLDSL 161 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ +GI + + N I++ F++ + + + + Sbjct: 162 AGDIRTQLRDKGIRHSGIDRNNNTISIKFSNPDEADRARTLLADSTR--------ELAYT 213 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + + ++ + + +V +A++Q++ + R++++G++E IQ+ G RI++QL Sbjct: 214 VDKSADGATLTGTFTAAAMKEVQDNAVKQNIVTLHNRVNELGVAEPVIQQQGPDRIVVQL 273 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVE 248 PG QD ++ + ++G TA + PN L D L++ +V Sbjct: 274 PGVQDTAKAKDIIGRTATLEARLADPNAPLAPRPGDPVPLGDELFTQGRSAPVLLQKQVI 333 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G + A+A FD + VDI+ D G R +V+RDNIGK + +VL + + Sbjct: 334 FTGDRITSASAGFDQNHNS-SVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 392 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G + E A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 393 VATIQSELGSRFQITGMGSTEAASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 452 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + + G + I +FM++ Y +G + ++ +NV L +ALLS+L ATLTLP IA I L +G Sbjct: 453 DSALYGFLAISVFMVLYYMLFGAFSVAALGVNVFLLIALLSMLQATLTLPGIAAIALALG 512 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NER+REE R S ++ GF RA++TI DSN+T LIA + L FG G V Sbjct: 513 MAIDANVLINERVREELRSGASAQMAIAAGFDRAWATILDSNVTTLIAGLALIAFGSGPV 572 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFAI L I SMF+A+ R ++ KK Sbjct: 573 RGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKKK 607 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG + +A+ +++ + + F ++ L +++ + Sbjct: 431 MEIIEERTIGPSLGADNIKKGFDSALYGFLAISVFMVLYY-MLFGAFSVAALGVNVFLLI 489 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ + S + I + Sbjct: 490 ALLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---SGASAQMAIAAGFDRA 546 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FAI GI + S++F ++ Y + Sbjct: 547 WATILDSNVTTLIAGLALIAFGSGPVRGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKK 606 Query: 829 K 829 K Sbjct: 607 K 607 Score = 37.7 bits (85), Expect = 7.6, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 15/33 (45%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34 R W I+ + IG L LPNF ++ + Sbjct: 3 RYPLWKYIVILVALAIGFLYTLPNFFGEAPAVQ 35 >gi|323499864|ref|ZP_08104823.1| preprotein translocase subunit SecF [Vibrio sinaloensis DSM 21326] gi|323315105|gb|EGA68157.1| preprotein translocase subunit SecF [Vibrio sinaloensis DSM 21326] Length = 315 Score = 226 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 162/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SIL SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAEKTIDFMRWSKLAFVFSILMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R LE+ GD + QNF ++ +VRL+ + D +T +++ Sbjct: 61 NLEEIRGALEAKGFGDATVQNFGSARDVMVRLRPRD-DVAGETLGNQILSAIKDGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D+++ SI +TL Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-ADIMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFTQGGALIHGFATALLLGITVGTYSSIYVASALALKLGITKE 297 >gi|29654448|ref|NP_820140.1| preprotein translocase subunit SecF [Coxiella burnetii RSA 493] gi|161830655|ref|YP_001597014.1| preprotein translocase subunit SecF [Coxiella burnetii RSA 331] gi|165919366|ref|ZP_02219452.1| protein-export membrane protein SecF [Coxiella burnetii RSA 334] gi|29541715|gb|AAO90654.1| protein translocase subunit [Coxiella burnetii RSA 493] gi|161762522|gb|ABX78164.1| protein-export membrane protein SecF [Coxiella burnetii RSA 331] gi|165916965|gb|EDR35569.1| protein-export membrane protein SecF [Coxiella burnetii RSA 334] Length = 304 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR R W S + + SI L +GLN G+DF GG Q+ V +PVD Sbjct: 1 MEFFKTNTKIPFMRQRKWAGIFSAIIFLASIITLAVNGLNLGLDFTGGTQVEVNFTKPVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R NL + +D + ++ +K+K+ +P Sbjct: 61 TNQIRKNLAEAGFPQAVVRVYDVRHISVRVAPHKELTQE-------ELKEKLMSAMPGGH 113 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I + + +GP++ ++L+ GI+ VI++ IA +IYI +RF+ FAL A LI D LG Sbjct: 114 IGSLDYIGPQVGKQLMTNGILAVIVALIATMIYIALRFEMRFALSAAIALIHDPVLILGI 173 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+ F IEFNL +AAVLT+IGYS+ND +VVYDR+R+N + + +++D SIN+TL Sbjct: 174 FSFFHIEFNLIVLAAVLTVIGYSLNDTIVVYDRIRENFRKVRRG-TPTEIVDLSINQTLS 232 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS I VL + ++GGS + FA+ + GIV+ SSI++A + + R Sbjct: 233 RTIMTSGLTLIVVLALFIFGGSTLRPFALALIIGIVIGTYSSIYVAGSLAVTFGLSRR 290 >gi|163857962|ref|YP_001632260.1| preprotein translocase subunit SecD [Bordetella petrii DSM 12804] gi|163261690|emb|CAP43992.1| secD [Bordetella petrii] Length = 626 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 178/516 (34%), Positives = 281/516 (54%), Gaps = 24/516 (4%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74 + LL A P ++ + LGLDLRGG H +L+VD + + Sbjct: 110 VALNLLPASPPWMRAL------GWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLA 163 Query: 75 DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134 ++R+ L+ E + + + + +FA++ ++ + L D + Sbjct: 164 ADVRTTLRDEKVPSRGVERAGTSVLATFANTDDRDRAYTTLRTRL--------PDLQFTE 215 Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194 + + +LS + +V A++Q++ + RI+++G++E IQ+ G+ RI++QLP Sbjct: 216 SEDSGHPALVGMLSPAAVTRVQDSALKQNINTLHNRINELGVAEPVIQQQGADRIVVQLP 275 Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248 G QD ++ ++LLG TA + V + + + FG+ D DG LV +V Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDSPAAQTALAGGTVPFGLERYTDRDGRPLLVRRQVI 335 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304 ++G +L A D +T + V ++ D GAR F +VTRDN+GK + G V+T Sbjct: 336 LTGENLQDAQPGRDSQTQQAAVHLTLDSKGARIFRDVTRDNVGKRMAILLFENGKGEVVT 395 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 APVI I G+ QISG+ T E A A +LRAG+L ++I+EER +G LG+D+I KG Sbjct: 396 APVIRSEIAGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKG 455 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 + + G + I +F+I+ Y +G+ + + +NV+L LALLS+L ATLTLP IA I L + Sbjct: 456 FHSTLYGFLAIAVFIILYYHLFGVFSTIGLSMNVLLLLALLSMLQATLTLPGIAAIALTL 515 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+A+DSN+L+NERIREE R S ++ GF RA+ TI DSN+T LI + L FG G Sbjct: 516 GMAIDSNVLINERIREELRNGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 +RGFA+ L I+ SMF+++ VRA+ KK Sbjct: 576 IRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKK 611 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 86/213 (40%), Gaps = 4/213 (1%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G A+ + + + +I +GP + + I KG + +A+ Sbjct: 407 QVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFHSTLYGFLAI 466 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++I + + F + + L +++ L ++ L +AA+ +G +++ V++ Sbjct: 467 AVFIILYYHL-FGVFSTIGLSMNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLI 525 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 +R+R+ ++ S + I G + +++ I L + +G I FA+ Sbjct: 526 NERIREELR---NGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GIV + SS+ + Y + K ARI Sbjct: 583 HCLGIVTSMFSSVVGVRALANLWYGRKKKLARI 615 Score = 42.4 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 34/128 (26%), Gaps = 29/128 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I + IGLL LPNF +S ++V Sbjct: 3 RYPLWKYITVLVAVVIGLLYTLPNFYGESPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117 D ++ L I ++ QN I F + + D + Sbjct: 38 SAKATIKVDNATLDRVQQILAAGNIQATNVYYEQNGTLGTIRARFPSTDVQLQARDLLDK 97 Query: 118 FLQGVNSK 125 L V Sbjct: 98 SLNTVADD 105 >gi|221638200|ref|YP_002524462.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides KD131] gi|221158981|gb|ACL99960.1| Protein-export membrane protein SecD [Rhodobacter sphaeroides KD131] Length = 554 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 190/553 (34%), Positives = 310/553 (56%), Gaps = 32/553 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLP------------------------QSMLDRFP 36 + W +L IC + +L A PNF + + +P Sbjct: 2 LHFPVWKRVLIWGICALAILYAAPNFFYSRVESHNDAVAAIEKAGGTATPEQTAAVGLWP 61 Query: 37 SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI-- 94 +P N ++LGLDLRGG+HL+ EV +D + E+R L+ V S+R+ Sbjct: 62 EWLPSNIVNLGLDLRGGAHLLAEVRVEDVYAARMDGLWPEVRDALRGLRDQVGSIRRQTA 121 Query: 95 -QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153 ++ ++ + + + Q V S + + ++ +++ + I L++ Sbjct: 122 PAGELRVAISRPEGMQAALEAARRLAQPVVSFTGMG-QNDIEISSQGDVLVIRLTEAEKT 180 Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213 + S ++QS+EIIR+R+D++G E TIQR G RILIQ+PG + L+ L+GTTAK++ Sbjct: 181 AMDSRTVQQSLEIIRRRVDEVGTREPTIQRQGEDRILIQVPGIGSAAELKSLIGTTAKLT 240 Query: 214 FHKV---LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 FH V + V + G Y+++ ++G L A +FD +P V Sbjct: 241 FHPVLGRTADAQSSASGDLVLPAANEQGIFYVLDRSPVVTGEELVDAQPSFDQNN-RPAV 299 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 F+ GAR F + T NIGKP A+VLD V++APVI I G I+GNF++E + Sbjct: 300 SFRFNPSGARAFGDYTAQNIGKPFAIVLDNEVISAPVIQAHIAGGSGIITGNFSVEESTE 359 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LA +LRAG+LP ++ +EER +G +LG DSI G A + G++ +V FMI YG +G++A Sbjct: 360 LAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVAFMIASYGWFGVLA 419 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 + ++ +N++ +ALLS++GATLTLP IAGIVL IG+AVD+N+L+ ERIREE R+ + Sbjct: 420 NIALAINMLAIIALLSVVGATLTLPGIAGIVLTIGVAVDANVLIYERIREELRQGKQPGR 479 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 ++++GF +A S I D+N+T + +++F G G VRGFA+T+ + I S+FTA+ + R + Sbjct: 480 AIELGFEKALSAIVDANVTTFLVALIMFLVGAGPVRGFAVTLTIGIFTSVFTAVYVTRIL 539 Query: 511 MIFIIRYKKMKSI 523 + +++ ++I Sbjct: 540 IATWFAWRRPRTI 552 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 89/208 (42%), Gaps = 4/208 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 G+ + V + + T +GP++ ++ I G I+ IA++ Sbjct: 347 IITGNFSVEESTELAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVA 406 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ + W F + A L +++ + ++ G L +A ++ IG +V+ V++Y+ Sbjct: 407 FMIASYGW-FGVLANIALAINMLAIIALLSVVGATLTLPGIAGIVLTIGVAVDANVLIYE 465 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ ++ I+ + L V ++ F+ L M + G + FA+ + Sbjct: 466 RIREELRQ---GKQPGRAIELGFEKALSAIVDANVTTFLVALIMFLVGAGPVRGFAVTLT 522 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830 GI + +++++ ++ + WR Sbjct: 523 IGIFTSVFTAVYVTRILIATWFAWRRPR 550 >gi|154706130|ref|YP_001424599.1| preprotein translocase subunit SecF [Coxiella burnetii Dugway 5J108-111] gi|154355416|gb|ABS76878.1| protein translocase subunit [Coxiella burnetii Dugway 5J108-111] Length = 304 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR R W S + + SI L +GLN G+DF GG Q+ V +PVD Sbjct: 1 MEFFKANTKIPFMRQRKWAGIFSAIIFLASIITLAVNGLNLGLDFTGGTQVEVNFTKPVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R NL + +D + ++ +K+K+ +P Sbjct: 61 TNQIRKNLAEAGFPQAVVRVYDVRHISVRVAPHKELTQE-------ELKEKLMSAMPGGH 113 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I + + +GP++ ++L+ GI+ VI++ IA +IYI +RF+ FAL A LI D LG Sbjct: 114 IGSLDYIGPQVGKQLMTNGILAVIVALIATMIYIALRFEMRFALSAAIALIHDPVLILGI 173 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+ F IEFNL +AAVLT+IGYS+ND +VVYDR+R+N + + +++D SIN+TL Sbjct: 174 FSFFHIEFNLIVLAAVLTVIGYSLNDTIVVYDRIRENFRKVRRG-TPTEIVDLSINQTLS 232 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS I VL + ++GGS + FA+ + GIV+ SSI++A + + R Sbjct: 233 RTIMTSGLTLIVVLALFIFGGSTLRPFALALIIGIVIGTYSSIYVAGSLAVTFGLSRR 290 >gi|294083975|ref|YP_003550732.1| preprotein translocase subunit SecF [Candidatus Puniceispirillum marinum IMCC1322] gi|292663547|gb|ADE38648.1| Preprotein translocase subunit SecF [Candidatus Puniceispirillum marinum IMCC1322] Length = 311 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 119/300 (39%), Positives = 183/300 (61%), Gaps = 5/300 (1%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL-ANR 587 R L+P F++ + + +S + SI + T GLN GIDFKGGI L Sbjct: 1 MRLKLVPSDTNFDFLKLQKITMVLSTFLVLASIGMFATVGLNLGIDFKGGILLEARNMTG 60 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P D+S VR++L +L +GD+S Q F E + L+R+Q Q GD AQ ++ V + Sbjct: 61 PADISKVRNDLGTLNLGDVSLQGFGTETDVLIRIQRQEGDEKAQIAAIKAVTDML---GS 117 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 I+ TE VGP + EL KGI+ V+ + +A+L+YIW RF+W F++ AI L D+ T Sbjct: 118 DYDIRRTEFVGPTVGAELAEKGILAVMCALMAILVYIWFRFEWQFSIAAIVALAHDVLST 177 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G F+L EFNL VAA+LT+ GYS+ND VVV+DR+R+N++ Y S RD++++S+NE Sbjct: 178 IGLFSLTSFEFNLATVAAILTIAGYSINDTVVVFDRVRENLRRY-KSYEQRDILNRSLNE 236 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R+V TS+ +++ + ++GG+V+ FA+ M +G+++ SS+FIA +L R Sbjct: 237 TLSRTVMTSVTTLLALTAIVIFGGAVLRDFALAMIWGVIIGTYSSVFIAVGMLSRFDLKR 296 >gi|73542495|ref|YP_297015.1| preprotein translocase subunit SecD [Ralstonia eutropha JMP134] gi|72119908|gb|AAZ62171.1| SecD/SecF/SecDF export membrane protein:SecD export membrane protein [Ralstonia eutropha JMP134] Length = 621 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 163/515 (31%), Positives = 273/515 (53%), Gaps = 30/515 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + LL P +L + LGLDLRGG H +L+VD V+ L Sbjct: 109 VVALNLLSGSPRWLTAMHA---------LPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSL 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ + + + + +K+T+ F ++ + L+ Sbjct: 160 AGDARTLLRDKNVRHGGIDRDGDKLTVRFNNADDANRARGILADNLRE------------ 207 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 L + ++ V A++Q++ + R++++G++E IQ+ G+ RI++QL Sbjct: 208 LAFAMDGNNVVGTFTEAARKAVQDAAVKQNITTLHNRVNELGVAEPVIQQQGADRIVVQL 267 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVE 248 PG QD ++ + ++G TA + P+ + FG +G +++ +V Sbjct: 268 PGVQDTAKAKDIIGRTATLEARLADPDAPRNPRAGDPVPFGSELFTQGNGAPVVLKKQVI 327 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G + A+A FD +P V+I D G R +V+R+NIGKP+ +VL + + Sbjct: 328 FTGDRIESASAGFDQNQ-RPSVNIKLDAQGGRVLRDVSRENIGKPMGIVLFEKGKGEVLT 386 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ QI+G+++ E A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 387 VATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGF 446 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 ++ G I +FM++ Y +G+ + ++ +N++L +A+LS+L ATLTLP IA I L +G Sbjct: 447 DSVAYGFGAITVFMVLYYMLFGVFSVAALGINLLLLIAVLSMLQATLTLPGIAAIALVLG 506 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NERIREE R S ++ +GF RA++TI DSN+T LIA + L FG G V Sbjct: 507 MAIDANVLINERIREELRAGASPQMAIAVGFERAWATILDSNVTTLIAGLALLAFGSGPV 566 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFA+ L IL SMF+A+ R ++ KK Sbjct: 567 RGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKK 601 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG V A+ +++ + + F + ++ L +++ + Sbjct: 425 MEIIEERTIGPSLGADNIQKGFDSVAYGFGAITVFMVLYY-MLFGVFSVAALGINLLLLI 483 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ ++G +++ V++ +R+R+ ++ S + I Sbjct: 484 AVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRA---GASPQMAIAVGFERA 540 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FA+ GI+ + S++F ++ Y + Sbjct: 541 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK 600 Query: 829 K 829 K Sbjct: 601 K 601 Score = 42.0 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG++ LPNF ++ + S G + + +++ Sbjct: 3 RYPLWKYVVILVALAIGIIYTLPNFFGEAPAVQVSS--------------GKATVKVDLS 48 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 V L + L+ +G+ + + F + + D ++ L Sbjct: 49 MQKHVEEILAQ------NQLQPDGVFF-DVSGQSGSVKARFRTTDDQLKAKDVLSRALNP 101 >gi|238021374|ref|ZP_04601800.1| hypothetical protein GCWU000324_01273 [Kingella oralis ATCC 51147] gi|237868354|gb|EEP69360.1| hypothetical protein GCWU000324_01273 [Kingella oralis ATCC 51147] Length = 614 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 168/505 (33%), Positives = 291/505 (57%), Gaps = 25/505 (4%) Query: 29 QSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85 Q+ + P + K + LGLDLRGG H ++VD + L Y+ ++R ++++ Sbjct: 102 QNQIANSPEWLEKIGAKPMFLGLDLRGGVHFTMQVDMKAALEKTLDRYAGDIRRTMRQQD 161 Query: 86 IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 I V +R+ +N + + F D+ + ++ L+G +++ EI++ Sbjct: 162 IRVGGIRKQENSLVVPFQDAADMQKALPELQKMLEGAQ------------ISSNGNEITV 209 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 L + Q+ S A++Q++ + R++++G +E IQ+ G+ RI++QLPG D ++ + + Sbjct: 210 ALPDALLAQIRSDAVKQNITTLHNRVNELGTAEPVIQQAGTDRIVVQLPGMTDTAKAKDI 269 Query: 206 LGTTAKMSFHKVLPNN------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 +G TA + V + G L D++G+Q+LV +VE++G ++N A Sbjct: 270 IGRTATLEVRMVSSDMALYAQAQNGNIPDGYELLSDNEGHQFLVSKQVELTGENINQAQG 329 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSG 315 + D +T P+V ++ D G+ F ++T N GK +A+VL + V+TAP IN+ I G Sbjct: 330 SQDQQTKLPIVSLALDSSGSSTFADLTTANKGKIMAMVLIDQGKAEVVTAPRINEPITGG 389 Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375 + QI+G ++ A +A +LRAGSL + I+EER +G LG+++I KG + V G V++ Sbjct: 390 RVQITGMASLAEANDVALLLRAGSLAAPMKIIEERTIGPSLGAENISKGIHSTVWGFVVV 449 Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435 +FMIV Y +G+ + S+ N++ A+LS L ATLTLP IA + L +G+A+DSN+L+N Sbjct: 450 TVFMIVYYRLFGIFSAISLSANLLFLFAILSALQATLTLPGIAAMALTLGMAIDSNVLIN 509 Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495 ERIR+E R+ + ++ G+ A+ TI DSN+T+LIA + L FG G VRGFAI L Sbjct: 510 ERIRDELREGKKAQIAIKEGYDHAWDTILDSNLTSLIAGIALLIFGTGPVRGFAIVHCLG 569 Query: 496 ILISMFTAISIVRAMMIFIIRYKKM 520 I+ S+++++ + RA++ +K Sbjct: 570 IMTSIYSSVVVSRALVNLWYGNRKK 594 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 84/201 (41%), Gaps = 4/201 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + I +GP + E I KGI + + + +++ + + Sbjct: 398 SLAEANDVALLLRAGSLAAPMKIIEERTIGPSLGAENISKGIHSTVWGFVVVTVFMIVYY 457 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + F + + +L ++ + L +AA+ +G +++ V++ +R+R + Sbjct: 458 RL-FGIFSAISLSANLLFLFAILSALQATLTLPGIAAMALTLGMAIDSNVLINERIRDEL 516 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + + I + + + +++ + I+ + + ++G + FAI GI+ + Sbjct: 517 REGKKA---QIAIKEGYDHAWDTILDSNLTSLIAGIALLIFGTGPVRGFAIVHCLGIMTS 573 Query: 809 ASSSIFIAAPILLFIYDWRAK 829 SS+ ++ ++ Y R K Sbjct: 574 IYSSVVVSRALVNLWYGNRKK 594 >gi|145299552|ref|YP_001142393.1| protein-export membrane protein SecF [Aeromonas salmonicida subsp. salmonicida A449] gi|142852324|gb|ABO90645.1| protein-export membrane protein SecF [Aeromonas salmonicida subsp. salmonicida A449] Length = 315 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 162/299 (54%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR GV S L + S+ LF GLN+G+DF GG + V + V Sbjct: 1 MFQILHFEKPIPFMRYAKPGVVFSALLMVISLFFLFDRGLNWGLDFTGGTTIEVGFQQSV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 L + L+ +I + Q+F ++ L RL + G V Q V + + Sbjct: 61 SLDKIHEVLDEQKIEGATLQHFGSSRDVLFRLTPKEGVKVEQQ--GNEVLAAAKRLDQGA 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + ++ S I +LIY+ +RF+W ALG I +L+ D+ TLG Sbjct: 119 VLKRVEFVGPSVGDELATDGAMAMLASIICILIYVAVRFEWRLALGGIISLVHDVVITLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 FA F EF+LT +AA++TL+GYS+ND +VV+DR+R+N + ++D S+ ETL Sbjct: 179 VFAYFQYEFDLTVLAALMTLVGYSLNDTIVVFDRLRENFRKVRKG-DTEYILDLSMTETL 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS F+ VL + + GG +I F++ M G+ SSI++A+ +F+ R Sbjct: 238 SRTIITSGLTFVVVLALLLKGGPLIHGFSVAMVIGVAFGTYSSIYVASAFAMFLGVKRE 296 >gi|74318097|ref|YP_315837.1| preprotein translocase protein SecD [Thiobacillus denitrificans ATCC 25259] gi|74057592|gb|AAZ98032.1| preprotein translocase protein SecD [Thiobacillus denitrificans ATCC 25259] Length = 604 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 170/515 (33%), Positives = 275/515 (53%), Gaps = 26/515 (5%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74 + L+ A P +L + LGLDLRGG H +LEVD + Y Sbjct: 101 VALNLVSASPAWLSTLNA---------LPMYLGLDLRGGVHFLLEVDMKAALEKAAVRYQ 151 Query: 75 DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134 ++ R+ L+ + I + + N + + FA ++ AD L V + L + Sbjct: 152 NDFRTELRGDKIRYSRISREGNAVVVRFATRDQRDAAAD----KLAAVFTDLGFAAEDL- 206 Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194 ++ L QV A++Q++ +R R++++G++E IQ+ G++R+++QLP Sbjct: 207 ---DDGFLLTARLKPEAEKQVQEFALQQNITTLRNRVNELGVAEPVIQQQGANRVVVQLP 263 Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSK-----KGFMFGVRFLRDSDGNQYLVEDKVEI 249 G QD ++ + +LG TA + V FG + +G + V+ V + Sbjct: 264 GVQDTAKAKDILGRTATLEVRMVDEQADPLLVEQGQAPFGAEIVASREGGKIAVKKDVVL 323 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTA 305 +G + A FD + + V I+ D GAR F +VTR+N+GK + +TA Sbjct: 324 TGDSITDAAPGFDSTSAQAAVHINLDGKGARIFKDVTRENVGKRMAILLIEKGIAEAITA 383 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 PVI + I G+ QI+G T + A +A +LRAG+L + IVEER VG +G+++I KG Sbjct: 384 PVIREEIGGGRVQITGMETAQEASDVALLLRAGALAAPMQIVEERTVGPSMGAENIEKGF 443 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + + G + +V FM + Y +GL + ++ +N +ALLS+L ATLTLP +A I L +G Sbjct: 444 HSNIWGFLAVVAFMTIYYRVFGLFSSVALAINGFFLIALLSMLQATLTLPGMAAIALTLG 503 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NERIREE R + ++ G+ RA+ TI DSN+T LIA + LF+ G G V Sbjct: 504 MAIDANVLINERIREELRNGATPQAAIHAGYDRAWGTILDSNLTTLIAGIALFWLGSGPV 563 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFA+ + L IL SMF+A+++ RAM+ + Sbjct: 564 RGFAVVLCLGILTSMFSAVTVSRAMVNLTYGRQPR 598 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 90/212 (42%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G AQ + + + I VGP + E I KG I +A++ Sbjct: 395 VQITGMETAQEASDVALLLRAGALAAPMQIVEERTVGPSMGAENIEKGFHSNIWGFLAVV 454 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ I ++ F L + L ++ + ++ L +AA+ +G +++ V++ Sbjct: 455 AFMTIYYRV-FGLFSSVALAINGFFLIALLSMLQATLTLPGMAAIALTLGMAIDANVLIN 513 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I + G + +++ I+ + + G + FA+ + Sbjct: 514 ERIREELR---NGATPQAAIHAGYDRAWGTILDSNLTTLIAGIALFWLGSGPVRGFAVVL 570 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++ ++ ++ Y + + A++ Sbjct: 571 CLGILTSMFSAVTVSRAMVNLTYGRQPRLAKV 602 Score = 38.1 bits (86), Expect = 6.5, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 25/116 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + L LPNF + ++V Sbjct: 3 RYPLWKYLLIGVTLVVAFLYTLPNFFGEVPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + + LK + + N I FA + + D + Sbjct: 38 PVRTSETVDTALLGRVEALLKTASLPTSGVELAGNSIKARFASTDVQIKAKDVLQN 93 >gi|288940930|ref|YP_003443170.1| protein-export membrane protein SecD [Allochromatium vinosum DSM 180] gi|288896302|gb|ADC62138.1| protein-export membrane protein SecD [Allochromatium vinosum DSM 180] Length = 618 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 178/524 (33%), Positives = 294/524 (56%), Gaps = 32/524 (6%) Query: 26 FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85 + L + + N++SLGLDLRGG H+V++VD + + ++ YS +LR+ L+++ Sbjct: 103 LTQSADLPGWMRWLGLNQMSLGLDLRGGIHVVIDVDMEAAIEQAVERYSGDLRTLLREDK 162 Query: 86 IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 I ++ + I + F D+ +E K+ + + + + Sbjct: 163 IRYLTLTRDGTNILIRFEDAASREAGEKKLKREFR--------ELDFQPSEESGAFVLRA 214 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 L + ++ A++Q++ +R R++ +G++E +I R G RI+++LPG QDP RL+ + Sbjct: 215 GLPETEQQKIKDFALQQNITTLRNRVNALGVAEPSIARQGDRRIVVELPGAQDPGRLKDI 274 Query: 206 LGTTAKMSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + + V S G + + +G L++ +V ++G + A+A Sbjct: 275 LGATATLEYRLVDTEGSVADAVAGRPPVGSKLYYERNGTPILLKRRVIVTGDQITDASAG 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP------- 313 FD ++ P V ++ D GARR +VT +N+GKP+AVV T +++ Sbjct: 335 FDSQSGSPAVFVNLDGQGARRMRDVTTENVGKPMAVVFIENRTTTQMVDGEPVKTTRKVE 394 Query: 314 ------------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + Q +G + A A +LR+G+L + IVEER +G LG D+I Sbjct: 395 EVISVATIREPFGRRFQTTGLDSSNEAHDTALLLRSGALAAPIEIVEERTIGPSLGQDNI 454 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 +G +++ GL L++LFM V Y +GLVA+ ++ +N++LT+A+LS+L ATLTLP IAGIV Sbjct: 455 DQGLESVMLGLGLVLLFMAVYYRVFGLVANLALVVNLVLTIAVLSMLQATLTLPGIAGIV 514 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IG+AVD+N+L+ ERIREE R S S+ G+ +A+STI D+N+T LIA VVLF FG Sbjct: 515 LTIGMAVDANVLIYERIREEIRNGNSPQASIHAGYDKAFSTIVDANVTTLIAAVVLFSFG 574 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ + I+ SMFTAI RA++ I +++ + I Sbjct: 575 TGPVKGFAVTLFIGIVTSMFTAILGSRALINLIYGGRRLNKLAI 618 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 104/279 (37%), Gaps = 4/279 (1%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 S + + + G V +V + Sbjct: 341 SPAVFVNLDGQGARRMRDVTTENVGKPMAVVFIENRTTTQMVDGEPVKTTRKVEEVISVA 400 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + R G + + + + I +GP + ++ I +G+ Sbjct: 401 TIREPFGRRFQTTGLDSSNEAHDTALLLRSGALAAPIEIVEERTIGPSLGQDNIDQGLES 460 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 V++ +L+++ + ++ F L A L++++ T+ ++ L +A ++ IG Sbjct: 461 VMLGLGLVLLFMAVYYRV-FGLVANLALVVNLVLTIAVLSMLQATLTLPGIAGIVLTIGM 519 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 +V+ V++Y+R+R+ ++ S + I ++ V ++ I+ + + +G Sbjct: 520 AVDANVLIYERIREEIR---NGNSPQASIHAGYDKAFSTIVDANVTTLIAAVVLFSFGTG 576 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + FA+ + GIV + ++I + ++ IY R N Sbjct: 577 PVKGFAVTLFIGIVTSMFTAILGSRALINLIYGGRRLNK 615 >gi|220935234|ref|YP_002514133.1| preprotein translocase subunit SecD [Thioalkalivibrio sp. HL-EbGR7] gi|219996544|gb|ACL73146.1| preprotein translocase subunit SecD [Thioalkalivibrio sp. HL-EbGR7] Length = 623 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 178/526 (33%), Positives = 282/526 (53%), Gaps = 35/526 (6%) Query: 25 NFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL 81 N + ++ P + +SLGLDLRGG H ++EVD V + Y E RS L Sbjct: 101 NVVALNLAPATPDWLRTFNARPMSLGLDLRGGVHFLMEVDMAAVVTASHERYVGEFRSLL 160 Query: 82 KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141 + E I S+ + + + F D+ ++ D + +G + + L Sbjct: 161 RDERIRYLSVERASEGVVVRFRDAAERDQAGDFLRREYRGDLDFRSDQAGEVFL------ 214 Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201 + L+Q+ + A++Q++ +R R++++G++E IQ+ G RI++QLPG QD +R Sbjct: 215 -LIASLTQDTLTDQRRLALQQNITTLRNRVNELGVAEPIIQQQGEDRIVVQLPGVQDTAR 273 Query: 202 LRQLLGTTAKMSFHKVLPNNS------KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLN 255 +++LG TA + F V N R R+ +GN L+ +V ++G ++ Sbjct: 274 AKEILGATATLEFRLVDEENDPFEAAATGRVPSASRLYRERNGNPVLLRRQVMLTGDYIV 333 Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AV 296 A + + P V I+ D GAR F VT +NIG+ + Sbjct: 334 DAASGIAQDSGGPAVFINLDAQGARIFSRVTGENIGRLMGTVFIETKTETVEENGEMVRR 393 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + Q + QI+G + A LA +LRAG+L + IVEER VG L Sbjct: 394 TTRTEEVINVARIQDQLGRRFQITGLESTREARNLALLLRAGALAAPMTIVEERTVGPSL 453 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G D+I +G ++V G +L+++FM + Y +GLVA+ ++ LN++L +++LS+L ATLTLP Sbjct: 454 GRDNIERGFNSVVIGFILVLIFMALYYRVFGLVANVALALNLVLIVSVLSMLQATLTLPG 513 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL +G+AVD+N+L+ ERIREE R S ++ G+ RA+STI D+NIT LIA +V Sbjct: 514 IAGIVLTVGMAVDANVLIFERIREELRNGNSPQAAIASGYDRAFSTIVDANITTLIAALV 573 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 LF FG G ++GFAIT+ + I+ISMFTAI + RA++ I ++ Sbjct: 574 LFMFGTGPIKGFAITLSIGIVISMFTAILVTRAIINLIYGRRRRIK 619 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 105/257 (40%), Gaps = 4/257 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 G + V + + N ++ L R G + Sbjct: 369 GRLMGTVFIETKTETVEENGEMVRRTTRTEEVINVARIQDQLGRRFQITGLESTREARNL 428 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + TI VGP + R+ I +G V+I I +LI++ + ++ F L A Sbjct: 429 ALLLRAGALAAPMTIVEERTVGPSLGRDNIERGFNSVVIGFILVLIFMALYYRV-FGLVA 487 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 L L++ + ++ L +A ++ +G +V+ V++++R+R+ ++ S Sbjct: 488 NVALALNLVLIVSVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFERIREELR---NGNS 544 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 + I + V ++ I+ L + ++G I FAI ++ GIV++ ++I + Sbjct: 545 PQAAIASGYDRAFSTIVDANITTLIAALVLFMFGTGPIKGFAITLSIGIVISMFTAILVT 604 Query: 817 APILLFIYDWRAKNARI 833 I+ IY R + + Sbjct: 605 RAIINLIYGRRRRIKAL 621 Score = 42.4 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 25/123 (20%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L ++ +G L A+PN P+ + + + Sbjct: 4 QYPLWKYLLIVVVVAVGALYAMPNLYPEDPAVQISNTTTD-------------------E 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D+ ++ R K G+ + L F ++ + AD + L G Sbjct: 45 VDEATRRQVEAVLAG-RGLNPKTGVEY-----DGQHVLLRFDNTDDQLQAADILRTALMG 98 Query: 122 VNS 124 + Sbjct: 99 TQN 101 >gi|332307524|ref|YP_004435375.1| protein-export membrane protein SecF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174853|gb|AEE24107.1| protein-export membrane protein SecF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 313 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 162/298 (54%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L+ + FM R S + I S+ L + LN+G+DF GG Q+ + + Sbjct: 1 MQLLNMKNTVGFMSLRVPAAIFSAILVIGSLVSLGVNQLNWGLDFTGGTQIEMRYQSVAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L + + QN+ ++ L+R+ G + + V + P Sbjct: 61 LDEVRAELTQAGFIEPTVQNYGSSQDILIRIAPMEGVKNV--EIGDRVVAALQAADPSVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + VGP I EL +G + +++S + +L+Y+ +RF+W FALG++ L D+ TLG Sbjct: 119 KRGIAFVGPNIGDELAEQGGLAMLVSLLCILVYVAMRFEWRFALGSVVALAHDVIITLGL 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F++ +EF+LT +AAVL +IGYS+ND +VV DR+R+N + S + ++I+ S+ +TL Sbjct: 179 FSVLQLEFDLTVLAAVLAVIGYSLNDTIVVSDRIRENFRKIRNSET-EEIINISLTQTLN 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS+ + ++ + GG+ I FA + FG+++ SSI++A+ + L++ R Sbjct: 238 RTIITSLTTILVLMSLFFLGGATIHGFATALLFGVIIGTYSSIYVASLVALWLGVSRE 295 >gi|212212458|ref|YP_002303394.1| preprotein translocase subunit SecF [Coxiella burnetii CbuG_Q212] gi|212010868|gb|ACJ18249.1| protein translocase subunit [Coxiella burnetii CbuG_Q212] Length = 304 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR R W S + + SI L +GLN G+DF GG Q+ V +PVD Sbjct: 1 MEFFKTNTKIPFMRQRKWAGIFSAIIFLASIITLAVNGLNLGLDFTGGTQVEVNFTKPVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R NL + +D + ++ +K+K+ +P Sbjct: 61 TNQIRKNLAEAGFPQAVVRVYDVRHISVRVAPHKELTQE-------ELKEKLMSAMPGGH 113 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I + + +GP++ ++L+ GI+ VI++ IA +IYI +RF+ FAL A LI D LG Sbjct: 114 IGSLDYIGPQVGKQLMTNGILAVIVALIATMIYIALRFEMRFALSAAIALIHDPVLILGI 173 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+ F IEFNL +AAVLT+IGYS+ND +VVYDR+R+N + + +++D SIN+TL Sbjct: 174 FSFFHIEFNLIVLAAVLTVIGYSLNDTIVVYDRIRENFRKVRRG-TPTEIVDLSINQTLS 232 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS I VL + ++GGS + FA+ + GIV+ SSI++A + + R Sbjct: 233 RTIMTSGLTLIVVLALFIFGGSTLRPFALALIIGIVIGTYSSIYVAGSLAVTFGLSRR 290 >gi|149194835|ref|ZP_01871929.1| protein export protein SecF [Caminibacter mediatlanticus TB-2] gi|149134994|gb|EDM23476.1| protein export protein SecF [Caminibacter mediatlanticus TB-2] Length = 323 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 168/285 (58%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM R + ISI I S+ +FT G N+GIDF GG+++ V +P+ ++ +R + Sbjct: 10 YDFMGKRKIFISISIFLIILSLFSIFTKGFNWGIDFAGGVEVQVRFEKPIKIATIREVIA 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + + F ++ FL+RL + +S + + +K +++I I+ +IVG Sbjct: 70 KK-YPNANITTFGSDREFLIRLNVKDVNSDVRKSLGSEIKNILSKIG-KVEIRRVDIVGA 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG+ +I + I +LIY+ RF+W FA+ ++ L D +LG + F IE N Sbjct: 128 KVGNELREKGLKALIFAIIGILIYVSFRFEWRFAVASVLALFHDTIISLGAVSAFNIEVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AA+LTL+GYS+ND +VV+DR+R+ +K + LI+ +I++TL R+V TS+ Sbjct: 188 LDVLAAILTLMGYSLNDTIVVFDRIREEVKK-SNIKDLATLINVAISKTLSRTVLTSLTT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 F VL + ++GG +I F+ + GI+V SSIFIA+P+L+++ Sbjct: 247 FFVVLTLYLFGGEIIKPFSFTLLVGIIVGTYSSIFIASPLLIWLG 291 >gi|299768780|ref|YP_003730806.1| preprotein translocase subunit SecD [Acinetobacter sp. DR1] gi|298698868|gb|ADI89433.1| preprotein translocase subunit SecD [Acinetobacter sp. DR1] Length = 633 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 158/535 (29%), Positives = 275/535 (51%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D V ++ + +LR ++ I Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAVAQRMETSATDLRRQFRENKI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ N IT+ FAD+ ++ D + + L ++T + + Sbjct: 163 KFNNLALTNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASSTGSTLKLT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ S+A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V +N + G Q L++ ++G Sbjct: 275 GRTANLEFRLVSDSNDQYIDPYTGKYNGQPLPPGTEVFAYESLDSGRQLLLQRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F + V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKITYVTDPK 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QA+ +I+G + + A LA MLRAG+L + V Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I KG + G +L+ ++M+V + +GL+A+F++ +N+ + L ++S Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVVNLAMILTVMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE S ++ G+ RAY+TIFDSN Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I ++ Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQIIYGKRRNLK 629 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 D + N + L G S Q + + Sbjct: 386 KITYVTDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAG 445 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +VGP + +E I KG++ I + + I++ + F+ F L A L+++ Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVVN 504 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + L + G L +A ++ IG +V+ V++ +R+R+ M S + I Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVA 561 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ F+ + G I FA+ + GIV + ++I + I+ I Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQII 621 Query: 824 YDWRAKNARI 833 Y R ++ Sbjct: 622 YGKRRNLKKL 631 >gi|254506706|ref|ZP_05118846.1| protein-export membrane protein SecF [Vibrio parahaemolyticus 16] gi|219550287|gb|EED27272.1| protein-export membrane protein SecF [Vibrio parahaemolyticus 16] Length = 315 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 163/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SIL SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAENTIDFMRWSKLAFVFSILMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +RS LE+ GD + QNF ++ +VRL+ + D +T +++ Sbjct: 61 NLEDIRSALEAKGFGDATVQNFGSARDVMVRLRPRD-DVAGETLGNQILNAIKDGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D+++ SI +TL Sbjct: 180 IFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-ADIMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGITKE 297 >gi|258626961|ref|ZP_05721763.1| protein export protein SecF [Vibrio mimicus VM603] gi|258580785|gb|EEW05732.1| protein export protein SecF [Vibrio mimicus VM603] Length = 306 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 95/289 (32%), Positives = 162/289 (56%), Gaps = 2/289 (0%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I FMR + +S++ SI L T LN+G+DF GG + V +P +L +R+ LE Sbjct: 2 IDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPANLEQIRTALE 61 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + GD + QNF ++ +VRL+ + D + +++ ++ E VGP Sbjct: 62 AKGFGDATVQNFGSARDVMVRLRPRD-DMAGEALGNQILAAIKEGTGGNVEVRRIEFVGP 120 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 + EL G + +++S + +L+Y+ +RF+W A GA+ L D+ TLG F++ IE + Sbjct: 121 NVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQIEVD 180 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT VAA+LT++GYS+ND +VV+DR+R+N + ++++ SI +TL R++ TS Sbjct: 181 LTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTLSRTLITSGTT 239 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V+ + GG++I FA+ + GI V SSI++A+ + L + R Sbjct: 240 LFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 288 >gi|238650647|ref|YP_002916499.1| preprotein translocase subunit SecD [Rickettsia peacockii str. Rustic] gi|238624745|gb|ACR47451.1| preprotein translocase subunit SecD [Rickettsia peacockii str. Rustic] Length = 518 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 193/532 (36%), Positives = 316/532 (59%), Gaps = 26/532 (4%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+N W + L + ++ ALPNF+ + +P + ++LGLDLRGG+HL+L+ Sbjct: 1 MQNLPKWKIFLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLD 55 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 VD D ++N ++ +D LR +++ IG ++ QN I L + + + Sbjct: 56 VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEKLKPLKKIINK-- 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 ++ E +I + S++ ++ +++ ++QS+EI+R R+D G E Sbjct: 114 ----------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233 T+Q+ G IL+Q+PGE++PS L+ +LG TAK++FH V N + + + G + Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223 Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +S G Y+V K + G + + + VV SF+ +G++ F E+T++N G Sbjct: 224 GDNESHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTG 283 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K LA+VLD ++L+AP IN AI G+ I+GNFT+E+A LA +L+AGSLP L I+EER+ Sbjct: 284 KRLAIVLDNKLLSAPTINGAIMGGRGIITGNFTVESANELALLLQAGSLPAPLKIIEERS 343 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 +G +LG+DSI G A + G + + +FM+ YG GL A+ ++ L ++ LALLSL AT Sbjct: 344 IGPNLGADSIESGKKAELIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI D+N+T L Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTL 463 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 I +L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K K + Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515 Score = 128 bits (321), Expect = 4e-27, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I IA+ I++ + L A L L + L +LF Sbjct: 343 SIGPNLGADSIESGKKAELIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + +S I + Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDA 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S+I I +L+ I+ K ++ Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITK-LLIDIWVQYFKPKKL 515 >gi|77165812|ref|YP_344337.1| preprotein translocase subunit SecF [Nitrosococcus oceani ATCC 19707] gi|254434816|ref|ZP_05048324.1| protein-export membrane protein SecF [Nitrosococcus oceani AFC27] gi|76884126|gb|ABA58807.1| protein translocase subunit secF [Nitrosococcus oceani ATCC 19707] gi|207091149|gb|EDZ68420.1| protein-export membrane protein SecF [Nitrosococcus oceani AFC27] Length = 312 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 102/294 (34%), Positives = 166/294 (56%), Gaps = 2/294 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L+ + I FM R S+ + SI L GL++GIDF GG L V +PV+ Sbjct: 1 MKLLKKNLRIDFMGKRRLAFAFSLALLLISISSLIFQGLSFGIDFTGGTLLEVGYEQPVE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 LS VR NLE G Q+F ++ L+RL + + E++ +T Sbjct: 61 LSDVRQNLEEAGFGGAIVQHFGTTRDVLIRLA-PEAERSSAEVSEEILATLQKSRDNPAT 119 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGPK+ ++L +G + V+ + I +LIY+ +RF++ A+G++ LI D+ LG Sbjct: 120 MRRVEFVGPKVGKDLTEQGGLAVLYALIGILIYVALRFEYRLAIGSVVALIHDVIIVLGL 179 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+L EF+LT +AA+L +IGYS+ND +VV DR+R+N + + + +I+ SIN+TL Sbjct: 180 FSLLHFEFDLTVLAAILAVIGYSLNDTIVVSDRIRENFRKIRKG-TAKQIINTSINQTLS 238 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R++ TS+ + + + ++GG I SF+ + GIVV SSI++A P+ L + Sbjct: 239 RTIMTSLTTLLVLFALFLFGGETIHSFSTALIAGIVVGTYSSIYVATPMALALG 292 >gi|144899893|emb|CAM76757.1| Protein-export membrane protein [Magnetospirillum gryphiswaldense MSR-1] Length = 522 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 198/535 (37%), Positives = 309/535 (57%), Gaps = 26/535 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 ++ W + L ++ G + A PN L + D+ PS +SLGLDL+GGS+L+LEV Sbjct: 2 LQFPKWKIALVLLVALWGGIWATPNLLSRDTTDQMPSWW--QPVSLGLDLQGGSYLLLEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119 D L + LR+ L+KE + + + + + +D + Sbjct: 60 DTAYVKREHLSAMVETLRATLRKEKVRYSELGISGLDSVKVRISDEAE--------RERV 111 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 + KL+ + + + + + I+ A++QS+ I+R+R+D++G E Sbjct: 112 RPELRKLDPEAQ---FEAGEGGLFTFTYPTPVMAKRINQAVDQSIGIVRRRVDELGTREP 168 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF------- 232 +IQR G RI++QLPG ++P ++ LLG TAK++FH V + + G Sbjct: 169 SIQRQGVDRIIVQLPGVKNPEHIKSLLGKTAKLTFHLVDDTTTPDEAVRGRVPSGSMLLP 228 Query: 233 ---LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 + Y+V+ +VE+ G L A F +PVV F G +RF + T Sbjct: 229 SVEQERGMPSHYVVKKRVEVGGDMLTDAQPTFRDG--RPVVSFRFSVAGGKRFADTTSAA 286 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 GK LA+VLD +V++AP IN+ I G +ISG+F+++ A LA +LRAG+LP L ++EE Sbjct: 287 SGKLLAIVLDDKVISAPRINEPILGGAGEISGSFSVQGAQDLALLLRAGALPAPLVVLEE 346 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R VG DLG+DSI G A GL+L+V+FM+V+YG G +A+ ++ LN+++ LAL+S+LG Sbjct: 347 RTVGPDLGADSIQAGAVASGVGLLLVVVFMVVIYGTLGALANVALVLNLVILLALMSVLG 406 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 ATLTLP IAGIVL +G+AVD+N+L+ ER+REE R +S+ ++ + F RA+ TI D+N+T Sbjct: 407 ATLTLPGIAGIVLTMGMAVDANVLIYERMREEQRSGRSIISTIQVSFERAFGTILDANLT 466 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 L A +LF FG G VRGFA+T+ L +L SMFTAI + R M+ +R ++ K++ Sbjct: 467 TLAAAALLFQFGSGPVRGFAVTLSLGLLTSMFTAIMVTRLMVATWVRLRRPKTLP 521 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 59/140 (42%), Gaps = 3/140 (2%) Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A L+L++ L ++ G L +A ++ +G +V+ V++Y+RMR+ + Sbjct: 382 TLGALANVALVLNLVILLALMSVLGATLTLPGIAGIVLTMGMAVDANVLIYERMREEQR- 440 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 + S I S G + ++ + + +G + FA+ ++ G++ + Sbjct: 441 --SGRSIISTIQVSFERAFGTILDANLTTLAAAALLFQFGSGPVRGFAVTLSLGLLTSMF 498 Query: 811 SSIFIAAPILLFIYDWRAKN 830 ++I + ++ R Sbjct: 499 TAIMVTRLMVATWVRLRRPK 518 >gi|262066709|ref|ZP_06026321.1| export membrane protein SecF [Fusobacterium periodonticum ATCC 33693] gi|291379508|gb|EFE87026.1| export membrane protein SecF [Fusobacterium periodonticum ATCC 33693] Length = 318 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 87/296 (29%), Positives = 156/296 (52%), Gaps = 2/296 (0%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSVV 594 + + +R + + +SI+ + SI + F GLNYGIDF GG + ++ + L+ + Sbjct: 1 MKVNLHIIRNIKYYLSVSIVLVVLSIVVFFAKGLNYGIDFTGGNLFQLKYNDKKITLTEI 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 NL+ L + + + + V + E+ + Sbjct: 61 NDNLDKLSEKLPQVNSNSRKVQISEDGTIILRVPELKEEDKKEVLNSLQELGAFNL-DKE 119 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 + VG I +L + I + I AI +++YI +RF++ FA+G I +L+ DI +GF AL Sbjct: 120 DKVGASIGDDLKKSAIYSLGIGAILIVLYITLRFEFSFAIGGILSLLHDIIIAVGFIALM 179 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G E + +AA+LT++GYS+ND +V+YDR+R+N+K + + +D+S+N+T RS+ Sbjct: 180 GYEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEECMDESVNQTAIRSLN 239 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 TS+ SV+ + ++GG+ + +F + + GI+ SSIFIA PI+ + + N Sbjct: 240 TSITTLFSVIALLIFGGASLKTFIMTLLIGILAGTYSSIFIATPIVYLLNKRKGNN 295 >gi|332525403|ref|ZP_08401563.1| preprotein translocase subunit SecD [Rubrivivax benzoatilyticus JA2] gi|332108672|gb|EGJ09896.1| preprotein translocase subunit SecD [Rubrivivax benzoatilyticus JA2] Length = 634 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 164/514 (31%), Positives = 278/514 (54%), Gaps = 20/514 (3%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 + N + +S ++ + + + LGLDLRGG H +++VD + + + ++R+ Sbjct: 104 WVVALNLVSRSP--QWMARVHALPMYLGLDLRGGVHFLMQVDMKAALTKKAEAVTGDVRT 161 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+ + I + + N + + F ++ E + +T LQ + D ++ Sbjct: 162 LLRDKNIRHAGITREGNNVEVRFREAALAEQARNLLTDQLQDMTWTPTADAGGDV----- 216 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 ++ L +V A++Q++ + R++++G++E IQ+ G R+++QLPG QD Sbjct: 217 --KLVGTLKPQAATRVQEQALKQNISTLNNRVNELGVAEPVIQQQGLDRVVVQLPGVQDT 274 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD-------GNQYLVEDKVEISGI 252 ++ + ++G TA + V + G + G +V V ++G Sbjct: 275 AKAKDIIGRTATLEIRLVNETQEAVDAVRGAGPVPFGSERFLERGGQPVIVYRNVVLTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308 +L A FD +T++P V+++ D GAR F +VTR+N+GK + G V+TAPVI Sbjct: 335 NLTDAQPGFDGQTNEPTVNLTLDARGARIFKDVTRENVGKRMAILLFEKGKGEVVTAPVI 394 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 I G+ QISG T E A A +LRAGSL + I+EER +G LG+++I KG ++ Sbjct: 395 RTEIGGGRVQISGRMTTEEASDQALLLRAGSLAAPMEIIEERAIGPSLGAENIAKGFNSV 454 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 + G V I +FM Y +G+ + ++ N+++ +A+LS+L ATL+LP IA I L +G+A+ Sbjct: 455 LWGFVAIAVFMCAYYMLFGVFSTLALGFNLLMLIAVLSMLQATLSLPGIAAIALVLGMAI 514 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 D+N+L+NER+REE R S ++ G+ RA+ TI DSN+T LIA + L FG G VRGF Sbjct: 515 DANVLINERVREELRHGASPQVAISAGYERAWGTILDSNVTTLIAGLALLAFGSGPVRGF 574 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 A+ L IL SMF+A+ R ++ +K Sbjct: 575 AVVHCLGILTSMFSAVMFSRGLVNLWYGRQKKLK 608 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 87/212 (41%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + + + I +GP + E I KG V+ +A+ Sbjct: 403 VQISGRMTTEEASDQALLLRAGSLAAPMEIIEERAIGPSLGAENIAKGFNSVLWGFVAIA 462 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + F + + L ++ + ++ +L +AA+ ++G +++ V++ Sbjct: 463 VFMCAYY-MLFGVFSTLALGFNLLMLIAVLSMLQATLSLPGIAAIALVLGMAIDANVLIN 521 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ S + I G + +++ I+ L + +G + FA+ Sbjct: 522 ERVREELR---HGASPQVAISAGYERAWGTILDSNVTTLIAGLALLAFGSGPVRGFAVVH 578 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++ + ++ Y + K + Sbjct: 579 CLGILTSMFSAVMFSRGLVNLWYGRQKKLKSV 610 >gi|197283992|ref|YP_002149864.1| preprotein translocase subunit SecF [Proteus mirabilis HI4320] gi|227358139|ref|ZP_03842480.1| preprotein translocase subunit SecF [Proteus mirabilis ATCC 29906] gi|194681479|emb|CAR40323.1| protein-export membrane protein SecF [Proteus mirabilis HI4320] gi|227161475|gb|EEI46512.1| preprotein translocase subunit SecF [Proteus mirabilis ATCC 29906] Length = 337 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 97/310 (31%), Positives = 169/310 (54%), Gaps = 2/310 (0%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 + + + L I FMR IS L + SI ++ G N+G+DF GG Sbjct: 11 FKEHVVAQDYTVEQLNHGRKVIDFMRWDNVAFTISFLLLVASIAIISVKGFNWGLDFTGG 70 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + ++P DL +R +L + D QNF ++ +VR+ G Q +++ Sbjct: 71 TVIEINLSQPADLDKMRDSLAAAGYKDPLLQNFGSSRDIMVRMPPVEG-QAGQELGKKVI 129 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 EI +T++ E VGP + EL + G + ++ + I +LIY+ RF+W ALGA+ Sbjct: 130 DIINVEIDNDATVKRIEFVGPSVGSELAQTGAMALLSALICILIYVGFRFEWRLALGAVI 189 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 +L D+ TLG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + S+ Sbjct: 190 SLAHDVVITLGILSLFQIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY- 248 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 ++++ S+ +TL R++ TS + VL + ++GGS++ F++ M G+ SSI++A+ Sbjct: 249 EIMNVSLTQTLSRTIMTSATTLLVVLMLYIFGGSMLKGFSLVMLIGVSFGTVSSIYVASA 308 Query: 819 ILLFIYDWRA 828 + L + R Sbjct: 309 LALKMGMKRE 318 >gi|157964725|ref|YP_001499549.1| preprotein translocase subunit SecD [Rickettsia massiliae MTU5] gi|157844501|gb|ABV85002.1| Protein-export membrane protein secD [Rickettsia massiliae MTU5] Length = 518 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 194/532 (36%), Positives = 315/532 (59%), Gaps = 26/532 (4%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+N W ++L + ++ ALPNF+ + +P + ++LGLDLRGG+HL+L+ Sbjct: 1 MQNLPKWKIVLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLD 55 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 VD D ++N ++ +D LR +++ IG ++ QN I L + + + Sbjct: 56 VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEKLKPLKKIINK-- 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 ++ +I + S++ ++ +++ ++QS+EI+R R+D G E Sbjct: 114 ----------IDPEIIAEVNANKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233 T+Q+ G IL+Q+PGE++PS L+ +LG TAK++FH V N + + + G + Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223 Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +S G Y+V K + G + + + VV SF+ +G++ F E+T++N G Sbjct: 224 GDSESHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTG 283 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K LA+VLD ++L+AP IN AI G I+GNFTIE+A LA +LRAGSLP L I+EER+ Sbjct: 284 KRLAIVLDNKLLSAPTINGAIMGGSGIITGNFTIESANELALLLRAGSLPAPLKIIEERS 343 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 +G +LG+DSI G A + G + + +FM+ YG GL A+ ++ L ++ LALLSL AT Sbjct: 344 IGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI D+N+T L Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGISNLYAIRTGFESAFATILDANLTTL 463 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 I +L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K K + Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFKPKKL 515 Score = 130 bits (327), Expect = 8e-28, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I IA+ I++ + L A L L + L +LF Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + IS I + Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGISNLYAIRTGFESAFATILDA 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S+I I +L+ I+ K ++ Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVKYFKPKKL 515 >gi|319764883|ref|YP_004128820.1| protein-export membrane protein secd [Alicycliphilus denitrificans BC] gi|330827088|ref|YP_004390391.1| protein-export membrane protein SecD [Alicycliphilus denitrificans K601] gi|317119444|gb|ADV01933.1| protein-export membrane protein SecD [Alicycliphilus denitrificans BC] gi|329312460|gb|AEB86875.1| protein-export membrane protein SecD [Alicycliphilus denitrificans K601] Length = 631 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 169/514 (32%), Positives = 273/514 (53%), Gaps = 24/514 (4%) Query: 24 PNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF 80 P + +++ R P + + LGLDLRGG H +L+VD + + Y+ +LR+ Sbjct: 103 PYIVALNLVSRSPDWLTAINARPMYLGLDLRGGVHFMLQVDMQAAITKKAESYAGDLRTA 162 Query: 81 LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-QGVNSKLNVDPKKNLLVTTT 139 L+++ I + + + + D + V V + Sbjct: 163 LREKNIRHGGISRDGQAVDIRVRDEATATAARNLVADQFPDLVVASSPDG---------E 213 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + + + +V A++Q+M + RI+++G++E IQ+ G RI++QLPG QD Sbjct: 214 GLRLRATIKPEALRKVQEQALKQNMVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDT 273 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGI 252 ++ + +LG TA + V + G + D +G +V+ +V ++G Sbjct: 274 AKAKDILGRTATLEVRMVDEGTEARAAEMGTGPVPFGDEKYLDRNGQAVIVKKQVILTGE 333 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308 +L A FD +T +P V+++ D G+R F +VTR+NIGK + G V+TAPVI Sbjct: 334 NLTDAQPGFDGQTQEPTVNLTLDAKGSRIFKDVTRENIGKRMAIVLFEKGKGEVVTAPVI 393 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 I G+ QISG T A A +LRAGSL + I+EE +G LG+D+I +G ++ Sbjct: 394 RSEIGGGRVQISGRMTTTEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIARGIHSV 453 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 V G+ I FM V Y +G+ + ++ +NV++ +A+LS+L ATLTLP IA + L +G+A+ Sbjct: 454 VWGMAAIAAFMCVYYVLFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAI 513 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 DSN+L+NERIREE R + ++ G+ RA++TI DSN+T LIA + L FG G VRGF Sbjct: 514 DSNVLINERIREELRAGVAPQAAIAAGYERAWATILDSNVTTLIAGLALLAFGTGPVRGF 573 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 A+ + IL SMF+A+ R ++ KK Sbjct: 574 AVVHCIGILTSMFSAVFFSRGLVNLWYGRKKKLK 607 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 85/212 (40%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I +GI V+ A+ Sbjct: 402 VQISGRMTTTEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIARGIHSVVWGMAAIA 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + + F + + L +++ + ++ L +AA+ +G +++ V++ Sbjct: 462 AFMCVYY-VLFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ ++ + I + +++ I+ L + +G + FA+ Sbjct: 521 ERIREELRA---GVAPQAAIAAGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++F + ++ Y + K + Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGRKKKLKSV 609 Score = 42.8 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 37/139 (26%), Gaps = 25/139 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + IG L LPNF ++ + S + Sbjct: 3 RYPVWKYAILVIALLIGALYTLPNFFGEAPAVQV------------------SSAKATIK 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + ++ G+ S+ + + F + D + L Sbjct: 45 VDGALQRRVEEVLQSA-------GVSPDSVVFDGHSVRARFDTPDNQLKAKDAIEKALVP 97 Query: 122 VNSKLNVDPKKNLLVTTTE 140 S NL+ + + Sbjct: 98 DPSDPPYIVALNLVSRSPD 116 >gi|121596289|ref|YP_988185.1| preprotein translocase subunit SecD [Acidovorax sp. JS42] gi|120608369|gb|ABM44109.1| protein-export membrane protein SecD [Acidovorax sp. JS42] Length = 632 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 168/530 (31%), Positives = 275/530 (51%), Gaps = 22/530 (4%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ R P + + LGLDLRGG H +L+VD + ++ Y+ +LRS L+++ I Sbjct: 109 NLVSRSPDWLTALHARPMYLGLDLRGGVHFMLQVDMQAAITKKIESYAGDLRSALREKNI 168 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + + + D + + D + Sbjct: 169 RHGGIGREGQAVDIRVRDEATLTAARNLIADQF--------PDLAVVSSADGDGMRLRAT 220 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + + +V A++Q+M + RI+++G++E IQ+ G RI++QLPG QD ++ + +L Sbjct: 221 IKPEALRKVQEQALKQNMVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDIL 280 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGIHLNGATA 259 G TA + V + G + D +G +V+ +V ++G +L A Sbjct: 281 GRTATLEVRMVDEGTEARAAEMGTGPVPFGAEKYLDRNGQAVIVKKQVVLTGENLTDAQP 340 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSG 315 FD +T +P V+++ D G+R F ++TR+N+GK + G V+TAPVI I G Sbjct: 341 GFDGQTQEPTVNLTLDAKGSRIFKDITRENVGKRMAIVLFEKGKGEVVTAPVIRSEIGGG 400 Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375 + QISG T A A +LRAGSL + I+EE +G LG+D+I +G ++V G+V I Sbjct: 401 RVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIERGIQSVVWGMVAI 460 Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435 FM V Y +G+ + ++ +NV+L +A+LS+L ATLTLP IA + L +G+A+DSN+L+N Sbjct: 461 AAFMCVYYRLFGVFSTIALGVNVLLLIAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495 ERIREE R + ++ G+ RA++TI DSN+T LIA + L FG G VRGFA+ + Sbjct: 521 ERIREELRAGVAPQAAIATGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVHCIG 580 Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545 IL SMF+A+ R ++ KK + ++ Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGRKKKLKSVSIGQVWKPEGDEHRSVAARGN 630 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 87/212 (41%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I +GI V+ +A+ Sbjct: 402 VQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIERGIQSVVWGMVAIA 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ F + + L +++ + ++ L +AA+ +G +++ V++ Sbjct: 462 AFMCVYYRL-FGVFSTIALGVNVLLLIAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ ++ + I + +++ I+ L + +G + FA+ Sbjct: 521 ERIREELRA---GVAPQAAIATGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++F + ++ Y + K + Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGRKKKLKSV 609 Score = 47.0 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + ++ IG L LPNF ++ ++V Sbjct: 3 RYPVWKYAILVIVLLIGALYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + LK + S+ N + F + D + L Sbjct: 38 SAKATLKVDAAVQQRVEDALKAANVASDSIVFDGNSVRARFDTPDNQLKAKDAIEKAL 95 >gi|260575194|ref|ZP_05843194.1| protein-export membrane protein SecF [Rhodobacter sp. SW2] gi|259022454|gb|EEW25750.1| protein-export membrane protein SecF [Rhodobacter sp. SW2] Length = 320 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 174/310 (56%), Gaps = 7/310 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L P+ F + + G S + ++ ++ GLN+GIDFKGG + + Sbjct: 1 MRLRLAPEHTNFDFFKHAYLTFGGSAVLTVLALVAWAVMGLNFGIDFKGGTTIRTESTMA 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD+ R L +GD+S ++R+ G V+ V+ + Sbjct: 61 VDIGAYRDALAGQDLGDVSITEVFDPTFREDQHVAMIRIAPLEGYEAVTPEVINTVEAAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 P T + E VG K+S ELI I+ ++ + +L+YIW+RF+W +A+GA+ L+ Sbjct: 121 NAHDPAMTFPSVESVGAKVSGELIWSAILAMVAATGCILVYIWLRFEWQYAVGAVAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 DI T+G FA F I+F+LT +AA+LT++GYS+ND VVV+DR+R+N++ Y + RD+++ Sbjct: 181 DIFITIGVFAAFQIKFDLTIIAALLTILGYSINDTVVVFDRLRENLQKY-KTTPLRDVMN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 S+N+TL R++ TS ++++ M ++GG VI F + FG+++ SS+F+A I+LF Sbjct: 240 ISVNQTLSRTLMTSFTTLLALIAMLIFGGDVIRGFTFAIFFGVILGTYSSVFVAKNIVLF 299 Query: 823 IYDWRAKNAR 832 + R++ + Sbjct: 300 LGLDRSEKPK 309 >gi|260548781|ref|ZP_05823003.1| protein-export membrane protein SecD [Acinetobacter sp. RUH2624] gi|260407949|gb|EEX01420.1| protein-export membrane protein SecD [Acinetobacter sp. RUH2624] Length = 633 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 155/535 (28%), Positives = 272/535 (50%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D ++ ++ + +LR ++ I Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ N IT+ FAD+ ++ D + + L + T + + Sbjct: 163 KFNNLALNNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASATGSTLKLT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ ++A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDVRRQEIQAYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V + G Q L++ ++G Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYQSLDSGRQLLLQRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F + V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPK 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QA+ +I+G + + A LA MLRAG+L + V Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I KG + G +L+ ++M+V + +GL+A+F++ N+ + L ++S Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRVFGLIANFALVFNLAMILTVMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE S ++ G+ RAY+TIFDSN Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I ++ Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQIIYGKRRNLK 629 Score = 156 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 4/245 (1%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 D + N + L G S Q + + + Sbjct: 391 TDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAP 450 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +VGP + +E I KG++ I + + I++ + F+ F L A L+ ++ L Sbjct: 451 MYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRV-FGLIANFALVFNLAMIL 509 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + G L +A ++ IG +V+ V++ +R+R+ M S + I + Sbjct: 510 TVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVAGYDRA 566 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++ F+ + G I FA+ + GIV + ++I + I+ IY R Sbjct: 567 YNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQIIYGKRR 626 Query: 829 KNARI 833 ++ Sbjct: 627 NLKKL 631 >gi|238795568|ref|ZP_04639083.1| Protein-export membrane protein secF [Yersinia mollaretii ATCC 43969] gi|238720687|gb|EEQ12488.1| Protein-export membrane protein secF [Yersinia mollaretii ATCC 43969] Length = 322 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 165/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR GIS+L + SI ++ T G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRRVYDFMRWDNVAFGISLLLLVASIAVMSTKGFNWGLDFTGGTVIEINLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R LE QNF ++ +VR+ G Q +++ + Sbjct: 65 PADLDQLRDTLEKAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + ++++ + +LIY+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALLCILIYVGFRFEWRLALGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|300721777|ref|YP_003711055.1| preprotein translocase auxillary membrane protein [Xenorhabdus nematophila ATCC 19061] gi|297628272|emb|CBJ88833.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Xenorhabdus nematophila ATCC 19061] Length = 322 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 95/301 (31%), Positives = 166/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L I FMR GIS L + SI + G N+G+DF GG + + ++ Sbjct: 5 YTVEQLNYGRRVIDFMRWDNVAFGISFLLLVASIVTMGVRGFNWGLDFTGGTVIEINLSK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R +L D QNF ++ +VR+ G+ Q +++ I Sbjct: 65 PADLDKMRDSLTQNGFSDALLQNFGSSRDVMVRMPPVAGN-AGQELGNKVISVINQHIDN 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + EL + G + ++++ I +LIY+ RF+W ALGA+ L D+ T Sbjct: 124 DATVKRVEFVGPSVGSELAQTGAMALLVALICILIYVGFRFEWRLALGAVIALAHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + S+ ++++ S+ + Sbjct: 184 VGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG ++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLLVVLMLYIFGGEMLKGFSLAMLIGVTIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|260776668|ref|ZP_05885563.1| protein-export membrane protein SecF [Vibrio coralliilyticus ATCC BAA-450] gi|260607891|gb|EEX34156.1| protein-export membrane protein SecF [Vibrio coralliilyticus ATCC BAA-450] Length = 315 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 165/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR + +SIL SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKADKLIDFMRWSKFAFVLSILMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL +R+ LE+ GD + QNF ++ +VRL+ + G +T +++ Sbjct: 61 DLEEIRTALEAKGFGDATVQNFGSARDVMVRLRPRDG-VAGETLGNQILSAIKEGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +I+S I +LIY+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAIIVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L IE +LT VAA+LT++GYS+ND +VV+DR+R+N + ++++ SI +TL Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-AEIMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGITKE 297 >gi|307294961|ref|ZP_07574803.1| protein-export membrane protein SecD [Sphingobium chlorophenolicum L-1] gi|306879435|gb|EFN10653.1| protein-export membrane protein SecD [Sphingobium chlorophenolicum L-1] Length = 533 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 189/533 (35%), Positives = 305/533 (57%), Gaps = 15/533 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W V + IG+ A+P+FLP ++++ P M + R++LGLDL GGSHL+LE Sbjct: 5 PRWAVAGILLPLLIGIFCAVPSFLPDRVVEQMPKFM-QTRVNLGLDLSGGSHLLLEASTQ 63 Query: 64 DFVNGFLQMYSDELRSFLK--KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + +++R+ L+ I + + K++ + + +++ Sbjct: 64 DVAKQRIANMEEQVRTELRRGDTKIAIGDISSRDGKLSFMVRNPSEVDAAVERIR---PL 120 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + + I I +Q ID + A+E + E+IR+RID++G E TI Sbjct: 121 TQGAGLTGQRDFNVEVMNSSTIVITPTQAGIDNAVKGAMEVATEVIRKRIDEMGTREPTI 180 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233 Q+ G++RI++Q+PG Q+P L+ LLG TAK+ F V N + G + Sbjct: 181 QQQGANRIVVQVPGLQNPKALKDLLGQTAKLEFKLVDVNANPAEVAQGRAPVGSEVLPYP 240 Query: 234 -RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 + V +V +SG L A ++ + ++P+V+I F+ G R+F +VT N+ + Sbjct: 241 TNPAGPPVIAVYRQVMVSGEDLTDAQQGYNQQGNEPIVNIRFNGAGGRKFGQVTSQNVNR 300 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 P A++LDG+VL+AP IN+ I G AQISG+FT+E+A LA LR+G LP+ L +VEER V Sbjct: 301 PFAIILDGKVLSAPNINEPILGGSAQISGSFTVESANQLAIALRSGKLPVALTVVEERTV 360 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G LG+DSI G A + + + FM + YG++G+ A+ ++ +NV++ L ++ +LGATL Sbjct: 361 GPQLGADSIRAGLTASIIAVAAVAAFMFLSYGRFGIYANLAVAINVLVILGVMGILGATL 420 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAG VL IG AVD+N+L+ ERIREE R+ ++V S++ G+ A TIF++N+T I Sbjct: 421 TLPGIAGFVLTIGTAVDANVLIYERIREERRRGRNVVQSIEHGYKEASRTIFEANVTHAI 480 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 A ++ G G V+GFAI + + I S+FTA++ R ++ + +R K+ I I Sbjct: 481 AGGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTRLLVSYWVRAKRPTEIHI 533 Score = 97.8 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 73/176 (41%), Gaps = 5/176 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ + IR G+ II+ A+ ++++ + F + A + +++ LG + G Sbjct: 361 GPQLGADSIRAGLTASIIAVAAVAAFMFLSYG-RFGIYANLAVAINVLVILGVMGILGAT 419 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A + IG +V+ V++Y+ + + + I+ E ++ Sbjct: 420 LTLPGIAGFVLTIGTAVDANVLIYE---RIREERRRGRNVVQSIEHGYKEASRTIFEANV 476 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ M G + FAI + GI + +++ +L+ + + I Sbjct: 477 THAIAGGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTR-LLVSYWVRAKRPTEI 531 >gi|300114774|ref|YP_003761349.1| protein-export membrane protein SecD [Nitrosococcus watsonii C-113] gi|299540711|gb|ADJ29028.1| protein-export membrane protein SecD [Nitrosococcus watsonii C-113] Length = 618 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 180/521 (34%), Positives = 283/521 (54%), Gaps = 36/521 (6%) Query: 33 DRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89 P + ++LGLDLRGG H ++EVD V + Y ++LR+ L++ I Sbjct: 106 PATPDWLRAMGGLPMNLGLDLRGGVHFLMEVDMKAAVQQAEERYVEDLRTLLRENRIRYL 165 Query: 90 SM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148 S+ R + + F + +E + + + + + I LS Sbjct: 166 SIGRLGAGGVEIKFRNEEQRERAETLIHDEYFDLLLESTEGERSP--------RLEIKLS 217 Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + ++ A++Q+M +R RI+++G++E TIQ+ G +RI++QLPG QD +R +++LG Sbjct: 218 EKEQREIQRLALQQNMTTLRNRINELGVAEPTIQQQGENRIVVQLPGVQDTARAKEILGA 277 Query: 209 TAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 TA + F V + G R + G L++ +V ++G H+ A++ + Sbjct: 278 TATLEFRLVDTSHDVQRAVEGRVPVGSRLYYERGGAPILLKKRVILTGDHVTDASSGIEQ 337 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLT 304 + P V +S D GAR F +VT +NIGKP+ V + Sbjct: 338 QGGSPAVFVSLDGQGARHFSQVTGENIGKPMAVVFIETKSETRMEGGEPVKVRRRVPEVI 397 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + S + QI+G + E A LA +LRAG+L ++IVEER +G LG D+I KG Sbjct: 398 NVATIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIVEERTIGPSLGQDNIDKG 457 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 +++ G L+++FM + Y +GLVAD ++ N++L ++LLS+L ATLTLP IAGIVL + Sbjct: 458 FQSVLIGFALVLVFMALYYRVFGLVADLALTANLVLLVSLLSMLQATLTLPGIAGIVLTV 517 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ ERIREE R S S++ G++ A STI D+NIT LI VVLF FG G Sbjct: 518 GMAVDANVLIFERIREELRNGSSPQASIEAGYANALSTIVDANITTLITAVVLFGFGTGP 577 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 ++GFA+T+ L IL SMFTAI RA++ I ++ + I Sbjct: 578 IKGFAVTLSLGILTSMFTAIMGTRAVINLIYGKRRKVRLAI 618 Score = 150 bits (379), Expect = 6e-34, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 104/277 (37%), Gaps = 4/277 (1%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 S + H + G V + + ++ N Sbjct: 341 SPAVFVSLDGQGARHFSQVTGENIGKPMAVVFIETKSETRMEGGEPVKVRRRVPEVINVA 400 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 ++ L + G + + + + I +GP + ++ I KG Sbjct: 401 TIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIVEERTIGPSLGQDNIDKGFQS 460 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 V+I +L+++ + ++ F L A L ++ + ++ L +A ++ +G Sbjct: 461 VLIGFALVLVFMALYYRV-FGLVADLALTANLVLLVSLLSMLQATLTLPGIAGIVLTVGM 519 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 +V+ V++++R+R+ ++ S + I+ L V ++ I+ + + +G Sbjct: 520 AVDANVLIFERIREELR---NGSSPQASIEAGYANALSTIVDANITTLITAVVLFGFGTG 576 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 I FA+ ++ GI+ + ++I ++ IY R K Sbjct: 577 PIKGFAVTLSLGILTSMFTAIMGTRAVINLIYGKRRK 613 >gi|113869069|ref|YP_727558.1| preprotein translocase subunit SecD [Ralstonia eutropha H16] gi|113527845|emb|CAJ94190.1| preprotein translocase subunit SecD [Ralstonia eutropha H16] Length = 623 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 164/515 (31%), Positives = 271/515 (52%), Gaps = 30/515 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + LL P +L + LGLDLRGG H +L+VD V+ L Sbjct: 109 VVALNLLSGSPRWLTAMHA---------LPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSL 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + R+ L+ + I + + ++T+ F ++ + L+ V Sbjct: 160 GGDARTLLRDKSIRHGGIDRDGERLTVRFNNADDANRARPLLADNLREV----------- 208 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 I ++ V A++Q++ + R++++G++E IQ+ G+ RI++QL Sbjct: 209 -AFAMDGNNIVGTFTEAARKAVQDAAVKQNITTLHNRVNELGVAEPVIQQQGADRIVVQL 267 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM-----FGVRFLRDSDGNQYLVEDKVE 248 PG QD ++ + ++G TA + V + + FG +G +++ +V Sbjct: 268 PGVQDTAKAKDIIGRTATLEARLVDNDAPRSPRPGDPIPFGSELFTQGNGAPVVLKKQVI 327 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G + A+A FD +P V+I D G R +V+R+N+ KP+A+VL + + Sbjct: 328 FTGDRIESASAGFDQNQ-QPSVNIKLDAQGGRVLRDVSRENLKKPMAIVLFEKGKGEVLT 386 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ QI+G+++ E A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 387 VATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIRKGF 446 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 ++ G I +FMI+ Y +G+ + ++ +N++L +A+LS+L ATLTLP IA I L +G Sbjct: 447 DSVAYGFAAIGVFMILYYMLFGVFSVVALGVNLLLLIAVLSMLQATLTLPGIAAIALVLG 506 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NERIREE R S ++ +GF RA++TI DSN+T LIA + L FG G V Sbjct: 507 MAIDANVLINERIREELRAGASPQMAIAVGFDRAWATILDSNVTTLIAGLALLAFGSGPV 566 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFA+ L IL SMF+A+ R ++ KK Sbjct: 567 RGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKK 601 Score = 151 bits (380), Expect = 4e-34, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 81/181 (44%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + IRKG V A+ +++ + + F + ++ L +++ + Sbjct: 425 MEIIEERTIGPSLGADNIRKGFDSVAYGFAAIGVFMILYY-MLFGVFSVVALGVNLLLLI 483 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ ++G +++ V++ +R+R+ ++ S + I + Sbjct: 484 AVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRA---GASPQMAIAVGFDRA 540 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FA+ GI+ + S++F ++ Y + Sbjct: 541 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK 600 Query: 829 K 829 K Sbjct: 601 K 601 Score = 40.8 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG++ LPNF ++ + S ++ L ++ Sbjct: 3 RYPLWKYLVILVALAIGIIYTLPNFFGEAPAVQVSSGKATVKVDL----------SMQKQ 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 ++ + + L+ +G+ + + F + + D ++ L Sbjct: 53 VEEILAQ----------NQLQPDGVFF-DISGQSGSVKARFRTTDEQLKAKDILSRTLNP 101 >gi|223042004|ref|ZP_03612187.1| preprotein translocase subunit SecF [Actinobacillus minor 202] gi|223017202|gb|EEF15631.1| preprotein translocase subunit SecF [Actinobacillus minor 202] Length = 324 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 4/297 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM+ R+ G S++ + I + T G N+G+DF GG + ++P DL VR Sbjct: 16 PYKLIPFMKYRYVGFVFSLILTALCIFSIATKGFNWGLDFTGGTVIETSFSQPADLEKVR 75 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 S LE G Q +K+ ++RL GD +++ MV + + +TI++ E Sbjct: 76 STLEKNGYGSALVQTTGSQKDIMIRLPASAGDKDLGNKIMNMVHQDL---DAGATIKSVE 132 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + +L+Y+ RF+ A G I L D+ TLG F+ Sbjct: 133 FVGPNVGEELTQGAIYATLATLGMLLLYVGTRFEVRMAFGGILALFHDVLVTLGVFSFLQ 192 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N S ++ID S+++TL R++ T Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKIRRVSSI-EVIDISLSQTLSRTLMT 251 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 S+ V + +GG I +F++ + GI SSI+IA + L + R + Sbjct: 252 SITTLFVVAALYWFGGPTIHNFSLALLIGIGFGTYSSIYIAIGVALQLGLDREHMNK 308 >gi|239906867|ref|YP_002953608.1| protein-export membrane protein SecD [Desulfovibrio magneticus RS-1] gi|239796733|dbj|BAH75722.1| protein-export membrane protein SecD [Desulfovibrio magneticus RS-1] Length = 534 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 190/530 (35%), Positives = 289/530 (54%), Gaps = 19/530 (3%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 N W + + S++ +GL+ LP+ +P + ISLGLDL+GG HL L VD Sbjct: 4 NLRWRLAVISLVAFLGLIYMLPSLGSVKQ-SFLGKFLPDDVISLGLDLKGGIHLTLGVDV 62 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122 D + L ++R +K EGI + + L F + + D + FL Sbjct: 63 DKALANSLAQMGRDVRDQVKDEGIVIQRPGTSPDGKRLEFVLAT-PDK-RDALDKFLSSH 120 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 S L+ + + +Q D ++Q+++ IR RID+ G++E I+ Sbjct: 121 FSVLH--VDGVESAADNKLLYKLSFTQRYKDDQARMTVDQAVKTIRNRIDEFGVAEPDIR 178 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG---- 238 + +RI IQLPG QDP R +L+G TA + F V + G+ D Sbjct: 179 KQADNRIQIQLPGLQDPERAIKLIGKTAHLEFKVVDETVDMEKAQKGILPPGDELSVLRH 238 Query: 239 ---------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 ++ ++G + A ANF ++ V ++F GAR+F VT +N Sbjct: 239 RNPDGSYLERPIALKADAVMTGESIADARANF-DPNNQAYVALTFTPSGARQFERVTAEN 297 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + K LA+VLDG+V +AP I + I G+A I+G F+ E A LA +LRAG+LP + I+E+ Sbjct: 298 VKKQLAIVLDGKVYSAPTIQEKIGGGRASITGRFSTEEARDLAIVLRAGALPAPVTILEQ 357 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R VG LG +SI KG + V G ++++ FMIV YG G VAD ++ N++L +A L+ G Sbjct: 358 RTVGPSLGQESIEKGVHSAVIGGLIVIAFMIVYYGVAGAVADAALLFNLMLIVAGLAGFG 417 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 ATLTLP IAGI+L IG+AVD+N+++ ER+REE R+ + ++D+G+SRA TI D+N+T Sbjct: 418 ATLTLPGIAGIILTIGMAVDANVIIFERVREELRRGLTARSAVDVGYSRATLTILDANVT 477 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519 +IA VVL+ FG G +RGFA+T+ L I+ SMFTAI R + + + Sbjct: 478 TVIAAVVLYQFGTGPIRGFAVTLILGIVASMFTAIFFTRFLFDLWLSKRP 527 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 103/247 (41%), Gaps = 5/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V V+ L + G + EK R S + R L +V + Sbjct: 291 ERVTAENVKKQLAIVLDGKVYSAPTIQEKIGGGRASITGRFSTEEARDLAIVLRAGALPA 350 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 P++ ++ + GP + +E I KG+ +I + ++ ++ + + A+ L ++ Sbjct: 351 PVTILEQRTV-GPSLGQESIEKGVHSAVIGGLIVIAFMIVYYGVAGAVADAALLF-NLML 408 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 + A FG L +A ++ IG +V+ V++++R+R+ ++ ++ R +D + Sbjct: 409 IVAGLAGFGATLTLPGIAGIILTIGMAVDANVIIFERVREELR---RGLTARSAVDVGYS 465 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + ++ I+ + + +G I FA+ + GIV + ++IF + Sbjct: 466 RATLTILDANVTTVIAAVVLYQFGTGPIRGFAVTLILGIVASMFTAIFFTRFLFDLWLSK 525 Query: 827 RAKNARI 833 R A + Sbjct: 526 RPAEASL 532 >gi|50083824|ref|YP_045334.1| preprotein translocase subunit SecD [Acinetobacter sp. ADP1] gi|49529800|emb|CAG67512.1| preprotein translocase, IISP family, part of the channel [Acinetobacter sp. ADP1] Length = 633 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 157/535 (29%), Positives = 270/535 (50%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD + + ++ ++R + I Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMNKAIAQRMETSVSDIRRQFRDNNI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ N I L FA++ ++ D + + + T T + + Sbjct: 163 KFNSLSLNNNAIVLQFANNADRDTAMDFLRRNGNEY--------TQQAVATATGASLRLS 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ S+A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDARRQEIESYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V N + G Q L+ ++G Sbjct: 275 GRTANLEFRLVADQNDQYIDPYTGKYNGQPLPPGTELFAYESLDSGRQLLLNRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F T V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDTGGAEVNITLDSAGGKLMADATRNAVGKRMAVLFIENKQRVSYVTDPA 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QA+ + +I+G + + A LA MLRAG+L + V Sbjct: 395 TGAQTEVRTPFTESVIINAATVQAVLGSQFRITGLDSPQEAAELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I KG + G +L+ ++MIV + +GL+A+F++ N+ + L ++S Sbjct: 455 EERVVGPSLGQENIDKGILSTEVGFILVAIWMIVFFRLFGLIANFALVFNLAMILTVMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE + S ++ G+ RAY+TIFDSN Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEIKWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I ++ Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLIYGKRRNLK 629 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 94/250 (37%), Gaps = 4/250 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + D + + N + L G Q + + Sbjct: 386 RVSYVTDPATGAQTEVRTPFTESVIINAATVQAVLGSQFRITGLDSPQEAAELALMLRAG 445 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +VGP + +E I KGI+ + I + I++ + F+ F L A L+ + Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGILSTEVGFILVAIWMIVFFRL-FGLIANFALVFN 504 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + L + G L +A ++ IG +V+ V++ +R+R+ +K S + I Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEIKW---GASPKQAIVA 561 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ F+ + G I FA+ + GIV + ++I + I+ I Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLI 621 Query: 824 YDWRAKNARI 833 Y R ++ Sbjct: 622 YGKRRNLKKL 631 Score = 45.5 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 28/117 (23%), Gaps = 25/117 (21%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR W +L ++ I L ALP+ P +++ Sbjct: 1 MRYPAWKYVLIIVVLIISTLYALPSLYPDEPA-------------------------VQI 35 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 Q + LK I N L S + D + Sbjct: 36 SGAKAGTQIDQSMVQKAEQILKTANITSHDNSFANNAALLRLNSSEDQLKAQDVLRR 92 >gi|240949466|ref|ZP_04753806.1| preprotein translocase subunit SecF [Actinobacillus minor NM305] gi|240296039|gb|EER46700.1| preprotein translocase subunit SecF [Actinobacillus minor NM305] Length = 324 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 4/297 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM+ R+ G S++ + I + T G N+G+DF GG + ++P DL VR Sbjct: 16 PYKLIPFMKYRYVGFVFSLILTALCIFSIATKGFNWGLDFTGGTVIETSFSQPADLEKVR 75 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 S LE G Q +K+ ++RL GD +++ MV + + +TI++ E Sbjct: 76 STLEKNGYGSALVQTTGSQKDIMIRLPASAGDKDLGNKIMNMVHQDL---DAGATIKSVE 132 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + +L+Y+ RF+ A G I L D+ TLG F+ Sbjct: 133 FVGPNVGEELTQGAIYATLATLGMLLLYVGTRFEVRMAFGGILALFHDVLVTLGVFSFLQ 192 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N S ++ID S+++TL R++ T Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKIRRVSSI-EVIDISLSQTLSRTLMT 251 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 S+ V + +GG I +F++ + GI SSI+IA + L + R + Sbjct: 252 SITTLFVVAALFWFGGPTIHNFSLALLIGIGFGTYSSIYIAIGVALQLGLDREHMNK 308 >gi|261252142|ref|ZP_05944715.1| protein-export membrane protein SecF [Vibrio orientalis CIP 102891] gi|260935533|gb|EEX91522.1| protein-export membrane protein SecF [Vibrio orientalis CIP 102891] Length = 315 Score = 224 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 163/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SIL SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAENTIDFMRWSKLAFVFSILMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +RS LE+ GD + QNF + +VRL+ + D +T +++ Sbjct: 61 NLEDIRSALEAEGFGDATVQNFGSAREVMVRLRPRD-DMAGETLGNQILNAIKDGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D+++ SI +TL Sbjct: 180 VFSMMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDVMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + V GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGITKE 297 >gi|229586924|ref|YP_002845425.1| preprotein translocase subunit SecD [Rickettsia africae ESF-5] gi|228021974|gb|ACP53682.1| Protein-export membrane protein secD [Rickettsia africae ESF-5] Length = 518 Score = 224 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 190/530 (35%), Positives = 310/530 (58%), Gaps = 25/530 (4%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W + L + ++ ALPN + + +P + ++LGLDLRGG+HL+L+VD Sbjct: 3 KLPKWKIFLSIICTVFAVICALPNVMQVNS-----KFLPHDSVNLGLDLRGGAHLLLDVD 57 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D ++N ++ +D LR +++ I ++ QN I L + + + Sbjct: 58 FDTYLNDSMENLADTLRKNFREDKIRYKNLLVRQNSIQLEVRSPEQLKPLKKIINK---- 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 ++ E +I + S++ ++ +++ ++QS+EI+R R+D G E T+ Sbjct: 114 --------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEPTL 165 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233 Q+ G IL+Q+PGE++PS L+ +LG TAK++FH V N + + + G + Sbjct: 166 QKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGD 225 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 S G Y+V K + G + + + VV SF+ +G++ F E+T++N GK Sbjct: 226 NASHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTGKR 285 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+VLD ++L+AP IN AI G I+GNFT+E+A LA +LRAGSLP L I+EER++G Sbjct: 286 LAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERSIG 345 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 +LG+DSI G A + G + + +FM+ YG GL A+ ++ L ++ LALLSL ATLT Sbjct: 346 PNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQATLT 405 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI D+N+T LI Sbjct: 406 LPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTLIV 465 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 +L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K K + Sbjct: 466 AFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I IA+ I++ + L A L L + L +LF Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + +S I + Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDA 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S+I I +L+ I+ K ++ Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVQYFKPKKL 515 >gi|85373546|ref|YP_457608.1| preprotein translocase subunit SecD [Erythrobacter litoralis HTCC2594] gi|84786629|gb|ABC62811.1| preprotein translocase subunit [Erythrobacter litoralis HTCC2594] Length = 532 Score = 224 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 182/535 (34%), Positives = 305/535 (57%), Gaps = 18/535 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W I I +L A+P+ L + + +P A+P ++LGLDL GGSH++LE Sbjct: 2 LEFPRWKKIWLWAITLAVMLAAVPSLLSTTSIR-WPDALPSPTVNLGLDLAGGSHILLEA 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKE--GIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 + L+ + +R+ ++ I + + +++ DS + + +T Sbjct: 61 EASQVRAQRLENMEEAVRNAMRSAEPRIRIGDVSTADGQLSFMLDDSGDIDRARELLTPL 120 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + G ++ L + + +Q+ ++Q ++ A++ + E++R+RID++G E Sbjct: 121 MNG-----QGLTREWELTLVDTSRVVLSPTQDGLEQAVTDAMDSATEVVRKRIDELGTRE 175 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233 TI R G RI++Q+PG QDP +L++LLG TAK+ F V G+ Sbjct: 176 PTIIRQGDTRIVVQVPGLQDPDQLKELLGQTAKLEFKMVDETALPSDVEQGIAPPGSQIF 235 Query: 234 -----RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 +G V I G L GA +FDP+T++PVV I FD+ G +RF +++ Sbjct: 236 PYAAGSAQEGLSVAVRRLGGIRGDSLIGAQQSFDPQTNEPVVTIQFDQQGGQRFAQLSTQ 295 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 N+GK A++LDG VL+ P N+ I G AQISG+FT+++A LA LR+G+LP+ L +VE Sbjct: 296 NVGKLFAIILDGEVLSTPSFNEPILGGSAQISGSFTVDSANALAISLRSGALPVDLAVVE 355 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER VG DLG+DSI G A+ G + ++ M+ YG++G+ A ++ +NVI+ L +++++ Sbjct: 356 ERTVGPDLGADSIRSGLLAMAIGSIAVIGLMVATYGRFGIYATAALVINVIMILGIMAVM 415 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 TLTLP IAG VL +G AVD+N+L+NERIREE ++ + V +++ G+ A I+D+N+ Sbjct: 416 NTTLTLPGIAGFVLTVGAAVDANVLINERIREERKRGRRVIAAVENGYREASRAIYDANV 475 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 T IA V+LF FG G +RGFA+ + + + S+FTA+++ R + +R + + Sbjct: 476 TNFIAGVLLFLFGSGPIRGFAVVLIIGLFTSVFTAVTLTRLWVAGWLRKARPSEL 530 Score = 129 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 78/177 (44%), Gaps = 8/177 (4%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + + IR G++ + I +IA++ + + F + A L++++ LG A+ Sbjct: 358 TVGPDLGADSIRSGLLAMAIGSIAVIGLMVATYG-RFGIYATAALVINVIMILGIMAVMN 416 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A + +G +V+ V++ +R+R+ K ++ E Sbjct: 417 TTLTLPGIAGFVLTVGAAVDANVLINERIREERKRGRR---VIAAVENGYREASRAIYDA 473 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ FI+ + + ++G I FA+ + G+ +S+F A + + AR Sbjct: 474 NVTNFIAGVLLFLFGSGPIRGFAVVLIIGL----FTSVFTAVTLTRLWVAGWLRKAR 526 >gi|89068238|ref|ZP_01155648.1| protein-export membrane protein SecF [Oceanicola granulosus HTCC2516] gi|89046155|gb|EAR52213.1| protein-export membrane protein SecF [Oceanicola granulosus HTCC2516] Length = 322 Score = 224 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 170/305 (55%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P F +GIS + ++ GLNYGIDF GG + + +P Sbjct: 1 MRLRLVPQETNWDFFSRSRLWLGISAFMIVLALVSFGVRGLNYGIDFAGGTTIRTESAQP 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGE------KNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD+ R+ L L++GD++ V +Q Q G + V+ + Sbjct: 61 VDVGAYRAALAPLELGDVTITEVYDPTFGDDRNVASVAIQAQEGQESVTADTIAQVEAAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 TE+ P + E VGP +S ELI+ I+ V ++ A+LIYIW+RF+W FA+GA+ L+ Sbjct: 121 TEVAPDIVFASVESVGPTVSGELIKTAILAVCLAIGAVLIYIWLRFEWQFAVGAVLALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ TLG F+ GI F+L+ +AA+LT++GYS+ND VVV+DR+R+N++ + +++++ Sbjct: 181 DVVLTLGVFSELGIRFDLSIIAALLTIVGYSLNDTVVVFDRVRENLRRFKNR-PLKEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SIN TL R+ TS+ ++++ + V GG VI F M +GIVV SSIF A+ LL Sbjct: 240 LSINGTLSRTFMTSLTTLMALIALFVLGGDVIRGFVFAMIWGIVVGTYSSIFAASATLLV 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|85711201|ref|ZP_01042261.1| Preprotein translocase subunit SecF [Idiomarina baltica OS145] gi|85695114|gb|EAQ33052.1| Preprotein translocase subunit SecF [Idiomarina baltica OS145] Length = 315 Score = 224 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 166/298 (55%), Gaps = 2/298 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 I I FMR R IS L I SI L + LN+G+DF GG + V + Sbjct: 1 MRQFIKTKERIGFMRFRGVFALISGLLLIASIVSLSVNKLNFGLDFTGGTLIEVGFPQAA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L VRS LE+ D QN+ +++ L+RL + G A+ +++ I Sbjct: 61 ELDQVRSTLEAGGFDDAVVQNYGTQQDLLIRLAPREG-VKAEELGTQILTTLREGIDNSI 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + E + +G + ++ + I +LIYI +RF+W A+GA++ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDEFVEQGGLAMLTALICILIYIAMRFEWRLAVGAVSALAHDVILTLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ G+EF+LT +AA+L +IGYS+ND VVV DR+R+ + Y ++ +I++++ +T+ Sbjct: 180 LFSALGLEFDLTVLAALLAVIGYSINDTVVVSDRVRETFRKYAK-LTPTQVINRALTDTM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 R++ TS+ + +L + GG +I FA + FG+ V SSIF+A+ + L + R Sbjct: 239 SRTLITSLTTILVLLALFFVGGQLIHGFATALLFGVFVGTYSSIFVASSVALSLGVSR 296 >gi|83858674|ref|ZP_00952196.1| probable protein-export membrane protein [Oceanicaulis alexandrii HTCC2633] gi|83853497|gb|EAP91349.1| probable protein-export membrane protein [Oceanicaulis alexandrii HTCC2633] Length = 327 Score = 224 bits (569), Expect = 7e-56, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 178/309 (57%), Gaps = 14/309 (4%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 LIP I F++ RF +S+ + S+ FT GLN+GIDF+GG + V P DL Sbjct: 7 RLIPTDTNIPFIKVRFAAFLVSVALILGSLGAFFTLGLNFGIDFRGGTAIEVRTEGPADL 66 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRL-------------QYQPGDSVAQTRVLEMV 638 +RS +E LQ+GD+ Q F E LVR+ D+ AQ V + V Sbjct: 67 GALRSVMEGLQLGDVQVQGFGSENEALVRVGQVSAERVNELEGHAVENDAEAQQAVRQYV 126 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 + P T Q E + P++S EL+ G + ++ ML+YIW RF+W +++GA+ Sbjct: 127 SDTLEREFPGITFQKIESLSPQVSGELVVAGATSIGVALFLMLVYIWFRFEWQYSVGAVL 186 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 LI D+ T+GFFA+ +EFNL+ +AA+LT++GYS+ND V+VYDR+R++ + + T Sbjct: 187 ALIHDVIATIGFFAITQLEFNLSTIAAILTIVGYSMNDTVIVYDRIREDFRKFKTR-PTV 245 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 D+++ +IN TL R++ TS I+++ MAV GG + FA+ + +G+ V SSIF+AAP Sbjct: 246 DVLNGAINSTLSRTILTSGTTMIAIVAMAVIGGPALQGFALALIWGVGVGTYSSIFVAAP 305 Query: 819 ILLFIYDWR 827 +L R Sbjct: 306 LLTLTGVKR 314 >gi|307822491|ref|ZP_07652722.1| protein-export membrane protein SecD [Methylobacter tundripaludum SV96] gi|307736095|gb|EFO06941.1| protein-export membrane protein SecD [Methylobacter tundripaludum SV96] Length = 615 Score = 224 bits (569), Expect = 7e-56, Method: Composition-based stats. Identities = 166/523 (31%), Positives = 293/523 (56%), Gaps = 38/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + + LGLDLRGG H +LEVD D V Y+D++R L+ E + Sbjct: 104 NLAPTTPAWLRSLGADAMYLGLDLRGGVHFLLEVDMDAAVKQAEDRYNDDVRLALRNEKL 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ + I + + K + + + + + + + Sbjct: 164 RYQSVSKDDGFIKVKLNSADDKPALLKVLGKDFRALEVTEPKEQDQVW----------LK 213 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ + + A+ Q+M +R R++++G++E IQ+ G +RI++QLPG QD +R +++L Sbjct: 214 LSEKEVRDIKKFAVAQNMTTLRNRVNELGVAEPVIQQQGENRIMVQLPGVQDTNRAKEIL 273 Query: 207 GTTAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 GTTA + + V + G R + +GN L++ +V ++G + +++ Sbjct: 274 GTTATLEYRLVDVEHDVQKAVEGHVPVGSRLYTERNGNPILLDRRVIVTGDQIVDSSSGV 333 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP-------- 313 D +P V+IS + +GA + ++T+ NIGKP+AVV + ++N Sbjct: 334 DQDG-RPSVNISLNGVGAAKMGKLTQANIGKPMAVVFIEYKVETKLVNGQKVRHKQKVEK 392 Query: 314 -----------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 S + Q +G + + A L+ +LRAG+L ++IVEER VG LG D+I Sbjct: 393 VINVATIQGVFSHRFQTTGLDSPQEARNLSLLLRAGALAAPVDIVEERTVGPSLGQDNID 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG + + G L+VLFM V Y +G++A+F++ NV++ +A+LS+L ATLTLP IAGI+L Sbjct: 453 KGMLSFMVGFALVVLFMAVYYRLFGMIANFALAFNVVIVVAILSMLQATLTLPGIAGIIL 512 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE + + ++ +G+ +A++TI DS+ T L+ VVLF +G Sbjct: 513 TVGMSVDANVLIFERIKEELKNGNTPQSAIFIGYEKAFATILDSHFTNLVVAVVLFAYGT 572 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+V+GFA+T+ + IL SMFTAI+ R ++ +I ++++ + I Sbjct: 573 GSVKGFAVTLIIGILSSMFTAITGTRMVINWIYGNRRVEKLSI 615 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 95/252 (37%), Gaps = 4/252 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 G V V+ +V + N + G Q Sbjct: 362 GKPMAVVFIEYKVETKLVNGQKVRHKQKVEKVINVATIQGVFSHRFQTTGLDSPQEARNL 421 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + I VGP + ++ I KG++ ++ +++++ + ++ F + A Sbjct: 422 SLLLRAGALAAPVDIVEERTVGPSLGQDNIDKGMLSFMVGFALVVLFMAVYYRL-FGMIA 480 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 L ++ + ++ L +A ++ +G SV+ V++++R+++ +K + Sbjct: 481 NFALAFNVVIVVAILSMLQATLTLPGIAGIILTVGMSVDANVLIFERIKEELK---NGNT 537 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 + I + + + + + + +G + FA+ + GI+ + ++I Sbjct: 538 PQSAIFIGYEKAFATILDSHFTNLVVAVVLFAYGTGSVKGFAVTLIIGILSSMFTAITGT 597 Query: 817 APILLFIYDWRA 828 ++ +IY R Sbjct: 598 RMVINWIYGNRR 609 Score = 43.1 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 28/122 (22%) Query: 1 MRN--NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58 M+N W +L +I +G++ ALPN + S P Sbjct: 1 MQNHFPLWKNLLVLIIFAVGIIYALPNLYGDDPSVQVSSTHPTK---------------- 44 Query: 59 EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 V +++ I F + I F + + +AD + Sbjct: 45 ------LVQEQANQIETVIKTA--GFNIKAFEFK--DGHILARFNSADDQLKVADLLRDK 94 Query: 119 LQ 120 + Sbjct: 95 MS 96 >gi|260893134|ref|YP_003239231.1| protein-export membrane protein SecF [Ammonifex degensii KC4] gi|260865275|gb|ACX52381.1| protein-export membrane protein SecF [Ammonifex degensii KC4] Length = 296 Score = 224 bits (569), Expect = 7e-56, Method: Composition-based stats. Identities = 94/294 (31%), Positives = 157/294 (53%), Gaps = 7/294 (2%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + + F+R RF +S+ + + LF GLN GIDF GG + V +RPV+++ VR Sbjct: 1 MRLHFVRWRFLWYALSLAVILPGLVSLFLRGLNLGIDFTGGSLIEVEFHRPVEIAEVRQV 60 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 + S + D Q + + + + V K + + + T+ +E V Sbjct: 61 MASFGLQDALIQKSGTS-------VFLIRTRPLEEKQSQEVVKALEQKIGPLTLLRSEKV 113 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP I +EL RK + +S + +LIY+ IRF + + AI L+ D+ LG F++F +E Sbjct: 114 GPVIGKELTRKAFLASGLSLVILLIYLAIRFDFKQGVAAIIGLVHDVLVVLGIFSIFQLE 173 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + + VAAVLT +GYS++D V+V+DR+R+N+K+ S D+I+ SI +TL RS+ T M Sbjct: 174 VDSSFVAAVLTTLGYSLHDTVIVFDRIRENIKIRKLSEPLADVINLSIWQTLTRSINTVM 233 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ + GGS + +F + + G++ A SS+ A+PI + W K Sbjct: 234 TVLFVLVALYFLGGSTLRNFVLALIIGVISGAYSSVCDASPIWYDLKRWEEKRR 287 >gi|56461248|ref|YP_156529.1| preprotein translocase subunit SecD [Idiomarina loihiensis L2TR] gi|56180258|gb|AAV82980.1| Preprotein translocase subunit SecD [Idiomarina loihiensis L2TR] Length = 614 Score = 224 bits (569), Expect = 7e-56, Method: Composition-based stats. Identities = 171/522 (32%), Positives = 282/522 (54%), Gaps = 37/522 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++E+D D+ V + D +R+ L++E I Sbjct: 104 NLAPATPEWLKSVGAQPMKLGLDLRGGVHFLMEIDMDEAVRKIVDGMKDTIRAELREERI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + A+ + QG LL + + + Sbjct: 164 RYSAVRVNDTTVEIELRNEEAYAEAANYLDGRYQGYT----------LLEDDENQLLQLQ 213 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ + + +A+ Q++ I+R R++++G++E IQR GS+RI+++LPG QD +R +++L Sbjct: 214 MSEQKLAETRDYAVSQNITIMRNRVNELGVAEPVIQRQGSNRIVVELPGVQDTARAKEIL 273 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V N + FG + DG L+++ V ++G H+ Sbjct: 274 GATATLEFRMVDSENDVRDAQNGRVPFGSELMPMRDGPAQLLKEDVILTGDHIVN-AGVG 332 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV--------------LTAPV 307 + ++P V+I+ D G + T+DN+G+P+A V A V Sbjct: 333 YDEYNRPQVNITLDGAGGNKMSLATKDNVGQPMATVFIEYKATDERDAEGNLQFTKNAEV 392 Query: 308 INQAIPSGKAQISGNFT---IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 IN A + + T A LA +LRAG+L + IVEER VG LG +I G Sbjct: 393 INVATIQSRLGSNFRITGVGANEAQNLALLLRAGALIAPIQIVEERTVGPSLGQQNIDAG 452 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 T AI G VL++ FM++ Y K+GLVA+ ++ N++L + ++S++ ATLTLP +AGIVL Sbjct: 453 TQAIFWGFVLVLAFMLLYYKKFGLVANCALAANLVLIIGVMSMIPGATLTLPGMAGIVLT 512 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ ERIREE + +S ++ G+ A STI D+N+T LIA ++LF G G Sbjct: 513 VGMAVDANVLIFERIREEIKAKRSPQQAIHHGYDSALSTIADANVTTLIAALILFAIGNG 572 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 ++GFAIT+ + I+ SMFTAI RA++ + KK+ + I Sbjct: 573 PIKGFAITLAIGIITSMFTAIVGTRAIVNSVWGGKKLSKLSI 614 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 94/239 (39%), Gaps = 5/239 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + R +LQ + + ++ A + + ++ Sbjct: 374 ATDERDAEGNLQFTKNAEVINVATIQSRLGSNFRITGVGANEAQNLALLLRAGALIAPIQ 433 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I VGP + ++ I G + + +L ++ + +K F L A L ++ +G Sbjct: 434 IVEERTVGPSLGQQNIDAGTQAIFWGFVLVLAFMLLYYK-KFGLVANCALAANLVLIIGV 492 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ +G +V+ V++++R+R+ +K S + I + L Sbjct: 493 MSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIREEIKAKR---SPQQAIHHGYDSAL 549 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I+ L + G I FAI +A GI+ + ++I I+ ++ + Sbjct: 550 STIADANVTTLIAALILFAIGNGPIKGFAITLAIGIITSMFTAIVGTRAIVNSVWGGKK 608 >gi|154248230|ref|YP_001419188.1| protein-export membrane protein SecF [Xanthobacter autotrophicus Py2] gi|154162315|gb|ABS69531.1| protein-export membrane protein SecF [Xanthobacter autotrophicus Py2] Length = 357 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 109/295 (36%), Positives = 177/295 (60%), Gaps = 5/295 (1%) Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DLS 592 IP I FMR R W S + SI ++ L HG N GIDFKGG + ++ V D+ Sbjct: 7 IPAQTNIHFMRLRHWTFPFSAVISIVAVVLFAIHGFNLGIDFKGGTLIEAQTSQQVADVG 66 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 +R +L L +GD+ Q F ++ L+R+ AQ ++ V+ + +++ Sbjct: 67 ALREHLTDLDVGDVQIQEFGSPRDVLIRVGAFGTTDEAQQAIITKVRDVL---GAEYSVR 123 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E VGP +S EL+R+ I+ +++ A+A+L Y+W RF+W FA+GAI T + DI TL ++ Sbjct: 124 RVETVGPSVSGELVRQSILALVLGAVAVLAYLWFRFEWQFAVGAIVTTMHDIFVTLMIYS 183 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 FGI+F+LT++AA+LT++GYS+ND VVVYDR+R+ ++ Y + +L+D ++N T R+ Sbjct: 184 AFGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRY-KKLPLPELLDIAVNATFSRT 242 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + S F + L + +GG V+ F++ M G+V+ S+IF+AAPIL+ + Sbjct: 243 IIVSTTTFFATLALYFFGGEVLRGFSLAMTVGVVIGTYSTIFVAAPILIHLGLRS 297 >gi|193213970|ref|YP_001995169.1| preprotein translocase subunit SecF [Chloroherpeton thalassium ATCC 35110] gi|193087447|gb|ACF12722.1| protein-export membrane protein SecF [Chloroherpeton thalassium ATCC 35110] Length = 307 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 90/309 (29%), Positives = 161/309 (52%), Gaps = 11/309 (3%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 + + F+ R IS + + GLNYGIDFKGG ++ + ++ +++ Sbjct: 1 MRFLEKPSFDFLGRRKIAYIISTTLILLGFASMLFKGLNYGIDFKGGTEMEIRFDKDINI 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 +R+ L + +G S +N+ ++ ++R + S Q V ++ K+ I Sbjct: 61 GELRTALLAAGVGG-SVKNYGSQQEVIIRTDFDGDLSTLQNLVTNVLTDKLP--DNHHEI 117 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + + VGP I+ +L + + + IA+L+Y+ RF++ FA + + D+ LG F Sbjct: 118 RRIDAVGPSIADDLKWSALQALFGALIAILLYVGARFEFKFATAGVVAIFHDVLIVLGLF 177 Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 ++FG +E + + +AA LT+ GYS+ D VVVYDR+R+N+KL + + + + S Sbjct: 178 SIFGGVFGVMPLEVDQSTIAAFLTIAGYSITDTVVVYDRIRENLKL-RKNEPYEKIFNDS 236 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +NETL R+V TS ++VL + + G I SFA + GI++ SS+F+AAPI+L Sbjct: 237 LNETLSRTVITSGTTLLTVLVLFILAGPAIRSFAFAILMGILIGTYSSLFVAAPIVLDWQ 296 Query: 825 DWRAKNARI 833 ++ Sbjct: 297 LRSKTKLKL 305 >gi|186477275|ref|YP_001858745.1| preprotein translocase subunit SecD [Burkholderia phymatum STM815] gi|184193734|gb|ACC71699.1| protein-export membrane protein SecD [Burkholderia phymatum STM815] Length = 681 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 168/517 (32%), Positives = 273/517 (52%), Gaps = 24/517 (4%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 I + L A P++L + LGLDLRGG H +L+VD +N L Sbjct: 108 FIVALNLQSASPHWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDS 158 Query: 73 YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 + + R+ L+ +GI + ++ + ++FAD E ++T + + +P Sbjct: 159 DASDARTLLRDKGIRDGGVNRVGQSVVINFADQDVAETARKQLTAGVSELQWATQPNP-- 216 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + + V A++Q++ + R++++G++E IQ+ GS RI+++ Sbjct: 217 -----SGGFQAVGTFTPAVQKTVEDAALKQNITTLHNRVNELGVAEPVIQQQGSDRIVVE 271 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPN----NSKKGFMFGVRFLRDSDGNQYLVEDKVE 248 LPG QD ++ + ++G TA + PN N G + L+ V Sbjct: 272 LPGVQDTAKAKDIIGRTATLEARLADPNGLHPNPSDPVPAGDELFTQGNAVPVLLRKSVI 331 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 332 FTGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRSVSRDNIGKPMAMVLFEKGKGEVLT 390 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I KG Sbjct: 391 VATIQSELGDRFQITGQPTPQAATDLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGF 450 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 ++V G + I FMI Y +GL++ ++ +N++L +A+LS+L ATLTLP IA I L +G Sbjct: 451 DSVVYGFIAIAAFMIAYYMLFGLISMIALSVNLLLLIAVLSMLQATLTLPGIAAIALALG 510 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NER+REE R ++ G++ A++TI DSN+T LIA + L FG G V Sbjct: 511 MAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPV 570 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 RGFA+ + IL SMF+A+ R ++ KK Sbjct: 571 RGFAVVHCIGILTSMFSAVFFSRGLVNLWYGGKKKLK 607 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 85/209 (40%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+KG V+ IA+ ++ Sbjct: 405 TGQPTPQAATDLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFDSVVYGFIAIAAFM 464 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F L ++ L +++ + ++ L +AA+ +G +++ V++ +R+ Sbjct: 465 IAYY-MLFGLISMIALSVNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERV 523 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + FA+ G Sbjct: 524 REELR---NGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCIG 580 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y + K + Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGGKKKLKSL 609 Score = 41.6 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 29/123 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + IGL+ LPNF ++ ++V Sbjct: 3 RYPLWKYAVMLVALVIGLVYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMR----QIQNKITLSFADSRFKENIADKVTL 117 ++ + L I + I + D+ + + D + Sbjct: 38 SGKATVKLDSTTLSQVEAALASSQIKPDDVTFDNSTQNANIRVRLKDTDTQLRVKDLLQK 97 Query: 118 FLQ 120 L Sbjct: 98 ALN 100 >gi|161579535|ref|YP_113194.2| preprotein translocase subunit SecD [Methylococcus capsulatus str. Bath] Length = 616 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 164/517 (31%), Positives = 274/517 (52%), Gaps = 36/517 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ PS + + LGLDLRGG H +L+VD D + Y+++ RS L++ I Sbjct: 104 NLAPSTPSWLRAFGAKPMYLGLDLRGGVHFLLQVDMDAAIKQAEDRYAEDARSLLRENKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ + I + D + L+G+ + V E + Sbjct: 164 RYQSVEKQNGVIQVRLPDPNALSQAQVLLKRELRGL----------QIDVKEGENLLEGR 213 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ ++ A+ Q+ +R R++++G++E IQ+ G RI++QLPG QD +R +++L Sbjct: 214 LSEVERREIKRFAVAQNTTTLRNRVNELGVAEPVIQQQGEDRIVVQLPGVQDTARAKEIL 273 Query: 207 GTTAKMSFHKVLPNNSKKG----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 G TA + F V + G RD L+E K+ ++G + A + D Sbjct: 274 GATATLEFRLVDNEHPVPAEGEKAPLGSHLYRDRQNRPVLLERKIIVTGDQVVDAASGID 333 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP--------- 313 ++ +P V ++ + +GA++ + TR+N+G+ +AVV ++ Sbjct: 334 QQSGQPAVYVTLNSVGAKKMGDTTRENVGRAMAVVYIENKSETKEVDGQKVTTKKKVEEV 393 Query: 314 ----------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 S + QI+G + E A LA +LRAG+L ++IVEER VG +G ++I + Sbjct: 394 INIATIRDRFSKRFQITGLDSTEEARNLALLLRAGALAAPVDIVEERTVGPSMGKENIDR 453 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G + G + I +FMI+ Y +GL + ++ NV+L +A+LSLL ATLTLP +AGI L Sbjct: 454 GVKSNGYGFIAIAVFMILYYRMFGLFSILALAANVLLLVAVLSLLQATLTLPGLAGIALT 513 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+A+D+N+L+NERIREE R + ++ G+ RA++TI DSN+T +A V LF G G Sbjct: 514 VGMAIDANVLINERIREELRAGSTPHAAIHAGYERAFATILDSNVTTFVAGVALFLLGAG 573 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 VRGFA+ + + IL SMF+A+ + RA++ F ++ Sbjct: 574 PVRGFALVLCIGILTSMFSAVLVSRALVNFTYGRQRK 610 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 99/257 (38%), Gaps = 4/257 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 G V + V + + N ++ + G + Sbjct: 362 GRAMAVVYIENKSETKEVDGQKVTTKKKVEEVINIATIRDRFSKRFQITGLDSTEEARNL 421 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + I VGP + +E I +G+ IA+ +++ + ++ F L + Sbjct: 422 ALLLRAGALAAPVDIVEERTVGPSMGKENIDRGVKSNGYGFIAIAVFMILYYRM-FGLFS 480 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 I L ++ + +L L +A + +G +++ V++ +R+R+ ++ + Sbjct: 481 ILALAANVLLLVAVLSLLQATLTLPGLAGIALTVGMAIDANVLINERIREELRA---GST 537 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 I + +++ F++ + + + G + FA+ + GI+ + S++ ++ Sbjct: 538 PHAAIHAGYERAFATILDSNVTTFVAGVALFLLGAGPVRGFALVLCIGILTSMFSAVLVS 597 Query: 817 APILLFIYDWRAKNARI 833 ++ F Y + K +I Sbjct: 598 RALVNFTYGRQRKLVKI 614 >gi|238791405|ref|ZP_04635043.1| Protein-export membrane protein secF [Yersinia intermedia ATCC 29909] gi|238729021|gb|EEQ20537.1| Protein-export membrane protein secF [Yersinia intermedia ATCC 29909] Length = 322 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 166/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + G+S+L + SI ++ T G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRRVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R LE QNF ++ +VR+ G Q +++ I Sbjct: 65 PADLDQLRDTLEKAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESIDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + ++++ + +L+Y+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGILSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|318604599|emb|CBY26097.1| protein-export membrane protein SecF [Yersinia enterocolitica subsp. palearctica Y11] Length = 322 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 167/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + G+S+L + SI ++ T G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEISLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R LE+ QNF ++ +VR+ G Q +++ + Sbjct: 65 PADLDQLRDTLEAAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + +I++ + +L+Y+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALIVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGKPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|67459351|ref|YP_246975.1| preprotein translocase subunit SecD [Rickettsia felis URRWXCal2] gi|75536223|sp|Q4UKW3|SECD_RICFE RecName: Full=Protein-export membrane protein secD gi|67004884|gb|AAY61810.1| Protein-export membrane protein SecD [Rickettsia felis URRWXCal2] Length = 518 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 193/532 (36%), Positives = 312/532 (58%), Gaps = 26/532 (4%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+N W + L + ++ ALPNF+ + +P + ++LGLDLRGG+HL+L+ Sbjct: 1 MQNLPKWKIFLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLD 55 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 VD D ++N ++ +D LR +++ IG ++ QN I L + + + Sbjct: 56 VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEELKPLKKIINK-- 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 ++ E +I + S++ ++ +++ ++QS+EI+R R+D G E Sbjct: 114 ----------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233 T+Q+ G IL+Q+PGE++PS L+ +LG TAK++FH V N + + + G + Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223 Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +S Y+V K + G + + + VV SF+ +G++ F E+T++N G Sbjct: 224 GDSESHREYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTG 283 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K LA+VLD ++L+AP IN AI G I+GNFT+E+A LA +LRAGSLP L I+EER+ Sbjct: 284 KRLAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERS 343 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 +G LG+DSI G A + G + + +FM+ YG GL A+ ++ L ++ LALLSL AT Sbjct: 344 IGPSLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI DSN+T L Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDSNLTTL 463 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 I +L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K + Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFIPKKL 515 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I IA+ I++ + L A L L + L +LF Sbjct: 343 SIGPSLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + +S I + + Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDS 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I + ++G I FA+ + GI+ + S+I I ++ + Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFIPKK 514 >gi|34581475|ref|ZP_00142955.1| protein-export membrane protein secD [Rickettsia sibirica 246] gi|28262860|gb|EAA26364.1| protein-export membrane protein secD [Rickettsia sibirica 246] Length = 518 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 191/530 (36%), Positives = 312/530 (58%), Gaps = 25/530 (4%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W + L + ++ ALPNF+ + +P + ++LGLDLRGG+HL+L+VD Sbjct: 3 KLPKWKIFLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLDVD 57 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D ++N ++ +D LR +++ IG ++ QN I L + + + Sbjct: 58 FDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEQLKPLKKIINK---- 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 ++ E +I + S++ ++ +++ ++QS+EI+R R+D G E T+ Sbjct: 114 --------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEPTL 165 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233 Q+ G IL+Q+PGE++PS L+ +LG TAK++FH V N + + + G + Sbjct: 166 QKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGD 225 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 S G Y+V K + G + + + +V SF+ +G++ F E+T++N GK Sbjct: 226 NASHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAIVAFSFNNLGSKIFGEITKNNTGKR 285 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+VLD ++L+AP IN AI G I+GNFT+E+A LA +LRAGSLP L I+EER++G Sbjct: 286 LAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERSIG 345 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 +LG+DSI G A + G + + +FM+ YG GL A+ ++ L ++ LALLSL ATLT Sbjct: 346 PNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQATLT 405 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI D+N+T LI Sbjct: 406 LPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTLIV 465 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 +L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K K + Sbjct: 466 AFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I IA+ I++ + L A L L + L +LF Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + +S I + Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDA 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S+I I +L+ I+ K ++ Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVQYFKPKKL 515 >gi|53758903|gb|AAU93194.1| protein-export membrane protein SecD [Methylococcus capsulatus str. Bath] Length = 605 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 164/517 (31%), Positives = 274/517 (52%), Gaps = 36/517 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ PS + + LGLDLRGG H +L+VD D + Y+++ RS L++ I Sbjct: 93 NLAPSTPSWLRAFGAKPMYLGLDLRGGVHFLLQVDMDAAIKQAEDRYAEDARSLLRENKI 152 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ + I + D + L+G+ + V E + Sbjct: 153 RYQSVEKQNGVIQVRLPDPNALSQAQVLLKRELRGL----------QIDVKEGENLLEGR 202 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ ++ A+ Q+ +R R++++G++E IQ+ G RI++QLPG QD +R +++L Sbjct: 203 LSEVERREIKRFAVAQNTTTLRNRVNELGVAEPVIQQQGEDRIVVQLPGVQDTARAKEIL 262 Query: 207 GTTAKMSFHKVLPNNSKKG----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 G TA + F V + G RD L+E K+ ++G + A + D Sbjct: 263 GATATLEFRLVDNEHPVPAEGEKAPLGSHLYRDRQNRPVLLERKIIVTGDQVVDAASGID 322 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP--------- 313 ++ +P V ++ + +GA++ + TR+N+G+ +AVV ++ Sbjct: 323 QQSGQPAVYVTLNSVGAKKMGDTTRENVGRAMAVVYIENKSETKEVDGQKVTTKKKVEEV 382 Query: 314 ----------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 S + QI+G + E A LA +LRAG+L ++IVEER VG +G ++I + Sbjct: 383 INIATIRDRFSKRFQITGLDSTEEARNLALLLRAGALAAPVDIVEERTVGPSMGKENIDR 442 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G + G + I +FMI+ Y +GL + ++ NV+L +A+LSLL ATLTLP +AGI L Sbjct: 443 GVKSNGYGFIAIAVFMILYYRMFGLFSILALAANVLLLVAVLSLLQATLTLPGLAGIALT 502 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+A+D+N+L+NERIREE R + ++ G+ RA++TI DSN+T +A V LF G G Sbjct: 503 VGMAIDANVLINERIREELRAGSTPHAAIHAGYERAFATILDSNVTTFVAGVALFLLGAG 562 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 VRGFA+ + + IL SMF+A+ + RA++ F ++ Sbjct: 563 PVRGFALVLCIGILTSMFSAVLVSRALVNFTYGRQRK 599 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 99/257 (38%), Gaps = 4/257 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 G V + V + + N ++ + G + Sbjct: 351 GRAMAVVYIENKSETKEVDGQKVTTKKKVEEVINIATIRDRFSKRFQITGLDSTEEARNL 410 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + I VGP + +E I +G+ IA+ +++ + ++ F L + Sbjct: 411 ALLLRAGALAAPVDIVEERTVGPSMGKENIDRGVKSNGYGFIAIAVFMILYYRM-FGLFS 469 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 I L ++ + +L L +A + +G +++ V++ +R+R+ ++ + Sbjct: 470 ILALAANVLLLVAVLSLLQATLTLPGLAGIALTVGMAIDANVLINERIREELRA---GST 526 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 I + +++ F++ + + + G + FA+ + GI+ + S++ ++ Sbjct: 527 PHAAIHAGYERAFATILDSNVTTFVAGVALFLLGAGPVRGFALVLCIGILTSMFSAVLVS 586 Query: 817 APILLFIYDWRAKNARI 833 ++ F Y + K +I Sbjct: 587 RALVNFTYGRQRKLVKI 603 >gi|322834075|ref|YP_004214102.1| protein-export membrane protein SecF [Rahnella sp. Y9602] gi|321169276|gb|ADW74975.1| protein-export membrane protein SecF [Rahnella sp. Y9602] Length = 324 Score = 223 bits (568), Expect = 9e-56, Method: Composition-based stats. Identities = 95/302 (31%), Positives = 172/302 (56%), Gaps = 2/302 (0%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 P + L I FMR IS L I S+ ++ G N+G+DF GG + + + Sbjct: 6 PYTVEQLNYGRKVIDFMRWDNVAFCISGLLFIASVAIMGVRGFNWGLDFTGGTVIEISLS 65 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 +P +L V+R++LE D QNF ++ +VRL G+ Q +++ +I Sbjct: 66 QPANLDVMRADLEKAGFKDPVVQNFGSSRDVMVRLPPVSGN-AGQELGNKVLSLVNADID 124 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 +T++ E VGP + +L + G + ++++ I +LIY+ RF+W ALGA+ L D+ Sbjct: 125 KDATVKRVEFVGPSVGSDLAQAGGMALLMALICILIYVGFRFEWRLALGAVIALAHDVII 184 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T+G +LF IE +LT +A+++++IGYS+ND +VV DR+R+N + S+ ++++ S+ Sbjct: 185 TMGVLSLFRIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGNSY-EIMNVSLT 243 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + Sbjct: 244 QTLSRTIMTSATTLMVVLMLYIFGGALLEGFSLTMLIGVSIGTVSSIYVASALALKLGMK 303 Query: 827 RA 828 R Sbjct: 304 RE 305 >gi|262281062|ref|ZP_06058844.1| protein-export membrane protein SecD [Acinetobacter calcoaceticus RUH2202] gi|262257293|gb|EEY76029.1| protein-export membrane protein SecD [Acinetobacter calcoaceticus RUH2202] Length = 633 Score = 223 bits (568), Expect = 9e-56, Method: Composition-based stats. Identities = 159/535 (29%), Positives = 273/535 (51%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D V ++ + +LR ++ I Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAVAQRMETSATDLRRQFRENKI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ N IT+ FAD+ ++ D + + L ++T + + Sbjct: 163 KFNSLALTNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASSTGSTLKLT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ S+A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V N + G Q L++ ++G Sbjct: 275 GRTANLEFRLVSDANDQYIDPYTGKYNGQPLPPGTEVFAYESLDSGRQLLLQRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F + V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKITYVTDPK 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QA+ +I+G + + A LA MLRAG+L + V Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I KG + G +L+ ++M+V + +GL+A+F++ +N+ + L ++S Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVVNLAMILTVMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE S ++ G+ RAY+TIFDSN Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I + Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRHNLK 629 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 D + N + L G S Q + + Sbjct: 386 KITYVTDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAG 445 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +VGP + +E I KG++ I + + I++ + F+ F L A L+++ Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVVN 504 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + L + G L +A ++ IG +V+ V++ +R+R+ M S + I Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVA 561 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ F+ + G I FA+ + GI+ + ++I + I+ I Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQII 621 Query: 824 YDWRAKNARI 833 Y R ++ Sbjct: 622 YGKRHNLKKL 631 Score = 42.4 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44 MR W +L ++ I L ALP+ P + A +I Sbjct: 1 MRYPAWKYLLILVVLVISTLYALPSLYPDEPAVQISGAKAGTQI 44 >gi|224373501|ref|YP_002607873.1| preprotein translocase subunit SecF [Nautilia profundicola AmH] gi|223588532|gb|ACM92268.1| protein-export membrane protein SecF [Nautilia profundicola AmH] Length = 323 Score = 223 bits (568), Expect = 9e-56, Method: Composition-based stats. Identities = 101/294 (34%), Positives = 164/294 (55%), Gaps = 3/294 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L D FM R V IS++ I S+ +FT G N+GIDF+GG+++ V + D Sbjct: 1 MELFRDEKIYDFMSKRNIFVSISLILIILSLFSIFTKGFNWGIDFQGGVEVQVRFEKKAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R L S + + F E L+RL + + Q + + + + + Sbjct: 61 IGEIRK-LISQKFKGANITTFGNENEVLIRLNVKNASTNVQNDIGHQIAEILKPLG-KID 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I+ +IVG K+ EL KG+ I S I +LIY+ RF+W FA+ ++ L D +LG Sbjct: 119 IRRVDIVGAKVGNELKEKGLQAFIFSIIGILIYVAFRFEWRFAVASVLALFHDTIISLGA 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 + F IE NL +AA+LTL+GYS+ND +VV+DR+R+ ++ + LI+ +++ TL Sbjct: 179 VSFFHIEVNLDVLAAILTLMGYSLNDTIVVFDRIREQVRD-SKIRDLALLINDAVSRTLS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R+V TS+ F VL + ++GG +I F+ + GI+V SSIFIA+P+L+++ Sbjct: 238 RTVLTSLTTFFVVLTLYLFGGEIIKPFSFTLLVGIIVGTYSSIFIASPLLIWMG 291 >gi|293392574|ref|ZP_06636894.1| protein-export membrane protein SecF [Serratia odorifera DSM 4582] gi|291424976|gb|EFE98185.1| protein-export membrane protein SecF [Serratia odorifera DSM 4582] Length = 322 Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats. Identities = 95/301 (31%), Positives = 167/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + GIS+L I SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYVAFGISLLLLIASITVMSVRGFNWGLDFTGGTVIEINLEQ 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P +L ++R LE D QNF ++ +VR+ G Q +++ + Sbjct: 65 PANLDLMRDTLEKAGFKDPVLQNFGSSRDIMVRMPPVTG-PAGQELGNKVISVINASVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + EL + G + ++++ I +LIY+ RF+W A GA+ L D+ T Sbjct: 124 NATVKRVEFVGPSVGSELAQNGGMALLVALICILIYVGFRFEWRLAAGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + S+ ++I+ S+ + Sbjct: 184 LGVLSLFHIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIINVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTLMTSGTTLMVVLMLYIFGGAMLHGFSLAMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|157146975|ref|YP_001454294.1| preprotein translocase subunit SecF [Citrobacter koseri ATCC BAA-895] gi|157084180|gb|ABV13858.1| hypothetical protein CKO_02752 [Citrobacter koseri ATCC BAA-895] Length = 338 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS I +I ++ G N+G+DF GG + + + Sbjct: 20 YTVEQLNHGRKVYDFMRWDYWAFGISGFLLIAAIVVMGVRGFNWGLDFTGGTVIEITLEK 79 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R LE + QNF + +VR+ G+ Q +++ Sbjct: 80 PAEMDVMRDALEKAGFAEPLLQNFGSSHDIMVRMPPTEGEDGGQVLGSKVLSVINEATSQ 139 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + +I++ I++LIY+ RF+W A G + L D+ T Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALIVALISILIYVGFRFEWRLAAGVVIALAHDVIIT 199 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 259 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318 Query: 828 A 828 Sbjct: 319 E 319 >gi|301595291|ref|ZP_07240299.1| preprotein translocase subunit SecD [Acinetobacter baumannii AB059] Length = 633 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 156/535 (29%), Positives = 273/535 (51%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D ++ ++ + +LR ++ I Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ N IT+ FAD+ ++ D + + L +TT + + Sbjct: 163 KFNNLALNNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASTTGSILKLT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ ++A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDVRRQEIQAYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V + G Q L++ ++G Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYQSLDSGRQLLLQRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F + V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPK 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QA+ +I+G + + A LA MLRAG+L + V Sbjct: 395 TGAKTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I KG + G +L+ ++M+V + +GL+A+F++ N+ + L ++S Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE S ++ G+ RAY+TIFDSN Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I ++ Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLK 629 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 92/245 (37%), Gaps = 4/245 (1%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 D + N + L G S Q + + + Sbjct: 391 TDPKTGAKTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAP 450 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +VGP + +E I KG++ I + + I++ + F+ F L A L+ ++ L Sbjct: 451 MYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVFNLAMIL 509 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + G L +A ++ IG +V+ V++ +R+R+ M S + I + Sbjct: 510 TIMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVAGYDRA 566 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++ F+ + G I FA+ + GI+ + ++I + I+ IY R Sbjct: 567 YNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRR 626 Query: 829 KNARI 833 ++ Sbjct: 627 NLKKL 631 >gi|152968933|ref|YP_001334042.1| preprotein translocase subunit SecF [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893345|ref|YP_002918079.1| preprotein translocase subunit SecF [Klebsiella pneumoniae NTUH-K2044] gi|262042430|ref|ZP_06015590.1| protein-export membrane protein SecF [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330006903|ref|ZP_08305775.1| export membrane protein SecF [Klebsiella sp. MS 92-3] gi|150953782|gb|ABR75812.1| protein export protein SecF [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545661|dbj|BAH62012.1| preprotein translocase SecF subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040205|gb|EEW41316.1| protein-export membrane protein SecF [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535657|gb|EGF62106.1| export membrane protein SecF [Klebsiella sp. MS 92-3] Length = 323 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS I SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVWDFMRWDYWAFGISGFLLIVSIAIIGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 PVDL +R +L+ + QNF ++ +VR+ + +Q ++V Sbjct: 65 PVDLDQMRDSLQKAGFEEPQVQNFGSSRDIMVRMPPVHDANGSQELGSKVVTVINESTSQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + +I + + +LIY+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 MGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG ++ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLFLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|288958295|ref|YP_003448636.1| preprotein translocase SecF subunit [Azospirillum sp. B510] gi|288910603|dbj|BAI72092.1| preprotein translocase SecF subunit [Azospirillum sp. B510] Length = 318 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 143/304 (47%), Positives = 204/304 (67%), Gaps = 1/304 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L+PD I FM R G+ +S + SI S+ L F GLNYGIDF+GGI + + Sbjct: 1 MFHLRLVPDNTKIPFMNGRIAGLVVSAILSIASVILFFHPGLNYGIDFRGGIVIEARTPQ 60 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 D S +R L L +G ++ Q F ++ L+RL+ QPGD AQ + V+ + + VP Sbjct: 61 AADFSSLRHTLSGLGMGQVALQEFGSPQDVLIRLERQPGDDAAQQVAADKVRNTLAQAVP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VG +S EL G++ + ++ +AML+YIW RF+W F GA+ TLILDITK Sbjct: 121 GTQVRRVEAVGASVSGELFANGMLALGLAMLAMLVYIWFRFEWQFGFGAVVTLILDITKI 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +GF+A+ I+FNLTAVAA+LT++GYSVNDKVVVYDRMR+N+++Y + RDLID SINE Sbjct: 181 IGFYAVTDIQFNLTAVAAILTVMGYSVNDKVVVYDRMRENLRIY-KKMPLRDLIDLSINE 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R+V TS+ +S++P+A++GG + F I + FGIV+A SSS+FIAAPILLF+ + R Sbjct: 240 TLNRTVGTSVCTLLSIIPLALFGGEALQDFGIVLIFGIVLATSSSVFIAAPILLFLGENR 299 Query: 828 AKNA 831 + Sbjct: 300 LRRG 303 >gi|15829130|ref|NP_326490.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma pulmonis UAB CTIP] gi|14090074|emb|CAC13832.1| PROTEIN-EXPORT MEMBRANE PROTEIN SECD [Mycoplasma pulmonis] Length = 873 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 168/868 (19%), Positives = 319/868 (36%), Gaps = 78/868 (8%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---D 61 W ++ I + + + P ++ +D GG +++V Sbjct: 18 RWFIVFLITITTVLSVSIGSSLY----------VAPN--VNKSIDYGGGIESLIQVRNAK 65 Query: 62 EDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 ++ S+ L L G+ ++ + ++ K + Sbjct: 66 GENADENLTSQVSNSLHQRLTGGAGVNGSNVSVEGGGKIRISSTGVSSDDDKKKFEDSIV 125 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S + D N + +I R+D E Sbjct: 126 KKPSLILTDVNSNPIFQDGFFNPNI------------------------RLDYSKPEEIE 161 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 R + DPSR + + + ++ R + Sbjct: 162 WHRYVAPIKESSARDLPDPSRPGNSIVQIGLKNQDAITEFAKATDYISKSRIP--TLLFW 219 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 ++ VE + N A + V R N + + + Sbjct: 220 LDLKGLVEKGQLAENAADWEASGQRPYNFVFNGNRPFEIDRRVNRLIPNAKRESRLNVSS 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +L+ + QA+ + I+GN T +A LA + GS L ++ R V A LG+ S Sbjct: 280 FLLSEANVRQALNAETFIITGNLTASSAKQLALDVNFGSGDYTLELLSSRFVDATLGTQS 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 A + ++I L MI YG G+ + SI L + L+L + + L + +IA + Sbjct: 340 FNYAIIAGIISFIVIALIMIYNYGVLGIASSLSIGLYIFLSLTVFTWLNGEYSPATIAAL 399 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 V+ IG++VD+NI+ ERI+++ + S+ + + STI DSNIT LI + +LF+F Sbjct: 400 VIAIGMSVDANIITFERIKQQLKYGDSLKKATKNAHRFSLSTILDSNITTLIVSGILFYF 459 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------------------IRYKKMKS 522 G +RGF+I++ LSI+ +F + I R + K+ K Sbjct: 460 GTKLIRGFSISLILSIIFILFVMLIITRMATSLLIGTGFFDNRLYLIGVGRSFFTKEKKI 519 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 I +F + + F + I +F+ + L + I Sbjct: 520 ITFFEKLNYFKLSKWFILFFGVFVLIAIIIYSIFAGINGNFLSGFERSLEFQGGTNISFE 579 Query: 583 VLANRPVDLSVVRSN-------------LESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + L+ + E+L + + Sbjct: 580 KSSIDNLSLAEAQEIKNTLVNLKNTANGSENLITSGAQDIFINAKNQARSNYVVSLQTKQ 639 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 + + + IV + L++ IV + I + +++Y R K Sbjct: 640 VFDQDQINYIIQEVSKTFSNISSTPFIVSTNEASSLVKNSIVSISIGIVGIVLYTIFRLK 699 Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 W F++ AI L+ DI + FF +F +E + VAA+L++IGYS+ND +V +DR+++ M Sbjct: 700 WTFSIAAIVALLHDIVFVIAFFIIFRLEISPIFVAAILSIIGYSINDTIVTFDRIKEIMH 759 Query: 750 LYTTSISFRDLI-----DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 + +K+I +T+ RS+ T++ ++++ + + GS +F I + G Sbjct: 760 SEYYHQKIDQKVLINITNKAIKDTIKRSMLTTITTLVTIVVLLSFRGSTEVNFNIALFVG 819 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ SSIFIA+ + + + +R K R Sbjct: 820 LISGTYSSIFIASWLFVKLETFRQKMIR 847 >gi|290474702|ref|YP_003467582.1| preprotein translocase auxillary membrane protein [Xenorhabdus bovienii SS-2004] gi|289174015|emb|CBJ80802.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Xenorhabdus bovienii SS-2004] Length = 322 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 94/301 (31%), Positives = 165/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L I FMR GIS+L + SI + G N+G+DF GG + + ++ Sbjct: 5 YTVEQLNYGRKVIDFMRWDNVAFGISLLLLVASIITMGVRGFNWGLDFTGGTVIEINLSK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R +L D QNF ++ +VR+ G+ Q +++ I Sbjct: 65 PADLDKMRESLTKNGFADPLLQNFGSSRDVIVRMPPVTGN-AGQELGNKIISVINANIDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + EL + G + ++ + I++LIY+ RF+W ALGA+ L D+ T Sbjct: 124 DAVVKRVEFVGPSVGSELAQTGAMALLAALISILIYVGFRFEWRLALGAVIALAHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 LGVLSLFHIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG ++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLLVVLMLYIFGGEMLKGFSLAMLIGVSIGTISSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|320109189|ref|YP_004184779.1| protein-export membrane protein SecF [Terriglobus saanensis SP1PR4] gi|319927710|gb|ADV84785.1| protein-export membrane protein SecF [Terriglobus saanensis SP1PR4] Length = 317 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 88/297 (29%), Positives = 148/297 (49%), Gaps = 6/297 (2%) Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 + + + + +LF HG+ G+DFKGG + V + +RS L+ Sbjct: 11 WLSKKWYLLSFSLVFSVAGILSMLFWHGVPRGVDFKGGTLVYVSFPSTPNEDHLRSALDK 70 Query: 601 LQIGDISFQNFDGE-----KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + D Q G ++ + + R ++ T+ Sbjct: 71 ADVKDFRLQRISGNMGAAANEEVIAVPEMADANHDAARQSIEAALTNNYKDSGFRVEQTD 130 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 IVGP ++L R+ ++ S MLIY+W RF+ + A+ + D T+G F+L Sbjct: 131 IVGPTAGKQLTRQAGWAILWSLAGMLIYLWFRFELIYGAAAVVAVFHDTLITIGAFSLTN 190 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 E LT VAA+LTL+GYS+ND +VV+DR+R+N++ +++KSIN+TL R+V + Sbjct: 191 QEITLTVVAAILTLVGYSMNDTIVVFDRIRENLQTMRK-ADLSTVVNKSINQTLSRTVLS 249 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 S F++VL + ++GG V+ F+ + GI++ SSI +AAP+L+ DWRA + Sbjct: 250 SGLTFLTVLSLYLFGGEVLHGFSFALVVGILIGTYSSIAVAAPMLVAYQDWRASKGK 306 >gi|238783637|ref|ZP_04627658.1| Protein-export membrane protein secF [Yersinia bercovieri ATCC 43970] gi|238715515|gb|EEQ07506.1| Protein-export membrane protein secF [Yersinia bercovieri ATCC 43970] Length = 322 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 165/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR GIS+L + SI ++ T G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRRVYDFMRWDNVAFGISLLLLVASIAVMSTKGFNWGLDFTGGTVIEINLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R LE QNF ++ +VR+ G Q +++ + Sbjct: 65 PADLDQLRDTLEKAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + ++++ + +L+Y+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALLCILVYVGFRFEWRLALGAVIALAHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTLMTSGTTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|323128726|gb|ADX16156.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326626753|gb|EGE33096.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 338 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR FW GIS L I +I ++ G N+G+DF GG + + + Sbjct: 20 YTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 79 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q ++V Sbjct: 80 PAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQ 139 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++++ I++L+Y+ RF+W A G + L D+ T Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIIT 199 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 259 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318 Query: 828 A 828 Sbjct: 319 E 319 >gi|188026545|ref|ZP_02962529.2| hypothetical protein PROSTU_04657 [Providencia stuartii ATCC 25827] gi|188019374|gb|EDU57414.1| hypothetical protein PROSTU_04657 [Providencia stuartii ATCC 25827] Length = 337 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 94/310 (30%), Positives = 167/310 (53%), Gaps = 2/310 (0%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 + + + L FMR GISI+ I SI ++ G N+G+DF GG Sbjct: 11 FKEHVVAQDYTVEQLNYGRKVYDFMRWDNVAFGISIVLLIASIAIIGMKGFNWGLDFTGG 70 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + V ++P DL +R +L + D QNF ++ ++RL G Q E++ Sbjct: 71 TVIEVNLSQPADLDKIRDSLSNTAHKDPLIQNFGSSRDIMIRLPPIEG-VAGQEVGKEII 129 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 + +T++ E VGP + EL + G + ++ + I +LIY+ RF+W A GA+ Sbjct: 130 TIINKNVDEQATVKRIEFVGPSVGAELAQTGALALLTALICILIYVGFRFEWRLATGAVL 189 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 L D+ TLG +LF IE ++T VA+++++IGYS+ND +VV DR+R+N + + Sbjct: 190 ALAHDVVITLGILSLFHIEIDMTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY- 248 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 ++++ S+ +TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ Sbjct: 249 EIMNVSLTQTLSRTIMTSATTLLVVLMLYIFGGAMLEGFSLVMLIGVTIGTISSIYVASA 308 Query: 819 ILLFIYDWRA 828 + L + R Sbjct: 309 LALKMGMKRE 318 >gi|220932062|ref|YP_002508970.1| protein-export membrane protein SecF [Halothermothrix orenii H 168] gi|219993372|gb|ACL69975.1| protein-export membrane protein SecF [Halothermothrix orenii H 168] Length = 286 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 160/289 (55%), Gaps = 6/289 (2%) Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 M R IS+ + + L GLN+GIDF+GG + + ++ V R L +L Sbjct: 4 MGKRKIWYTISLTIIVLGLIFLMVKGLNFGIDFQGGTLMELKFDKYVSKEDAREVLATLN 63 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 + S E N ++ + + +K+ E P + + T++VGP I Sbjct: 64 LAKSSKIQQTEEVNGVIIR-----THNLSSEQISEIKQAFKEKYPSTEVLRTDMVGPLIG 118 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 +EL K ++I++IA+++YI +RF++ FA+ AI L+ D+ T+G FA+ G E N Sbjct: 119 KELRIKAFWALLIASIAIVLYISLRFEFRFAIVAIIALLHDVIITIGLFAIIGREINTPF 178 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 VAA+LT++GYS+ND +V++DR+R+NMKL F + ++++ +TL RS+ TS+ ++ Sbjct: 179 VAALLTIVGYSINDTIVIFDRIRENMKLM-RGKPFIEQANQAVIDTLPRSINTSLTTLVA 237 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 VL + ++GG+ I +F + + GI+ SSIF+A+P+L+ Sbjct: 238 VLAIYLFGGASIKTFMLALFIGILAGTYSSIFVASPLLVSWDKKLISKK 286 >gi|237730384|ref|ZP_04560865.1| preprotein translocase subunit SecF [Citrobacter sp. 30_2] gi|226905923|gb|EEH91841.1| preprotein translocase subunit SecF [Citrobacter sp. 30_2] Length = 338 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 160/301 (53%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS I +I ++ G N+G+DF GG + + + Sbjct: 20 YTVEQLNHGRKVWDFMRWDYWAFGISGFLLIAAIVVMGVRGFNWGLDFTGGTVIEITLEK 79 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P D+ V+R LE D QNF + +VR+ G Q +++ Sbjct: 80 PADMDVMRDALEKAGFVDPLLQNFGSSHDIMVRMPPTEGADGGQVLGSKVLSVINESTNQ 139 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + I++L+Y+ RF+W A G + L D+ T Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALMAALISILVYVGFRFEWRLAAGVVIALAHDVIIT 199 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 259 TLHRTLITSGTTLMVILMLFLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318 Query: 828 A 828 Sbjct: 319 E 319 >gi|238787977|ref|ZP_04631773.1| Protein-export membrane protein secF [Yersinia frederiksenii ATCC 33641] gi|238723925|gb|EEQ15569.1| Protein-export membrane protein secF [Yersinia frederiksenii ATCC 33641] Length = 322 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 167/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + GIS+L + SI ++ T G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYVAFGISLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R LE+ QNF ++ +VR+ G Q +++ + Sbjct: 65 PADLDQLRDTLEAAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + ++++ + +L+Y+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ + G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTLLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|162286720|ref|YP_001085921.2| preprotein translocase subunit SecD [Acinetobacter baumannii ATCC 17978] gi|169632425|ref|YP_001706161.1| preprotein translocase subunit SecD [Acinetobacter baumannii SDF] gi|169794704|ref|YP_001712497.1| preprotein translocase subunit SecD [Acinetobacter baumannii AYE] gi|184159486|ref|YP_001847825.1| preprotein translocase subunit SecD [Acinetobacter baumannii ACICU] gi|213157925|ref|YP_002320723.1| protein-export membrane protein SecD [Acinetobacter baumannii AB0057] gi|215482291|ref|YP_002324473.1| protein-export membrane protein SecD [Acinetobacter baumannii AB307-0294] gi|260557109|ref|ZP_05829325.1| protein-export membrane protein SecD [Acinetobacter baumannii ATCC 19606] gi|301347239|ref|ZP_07227980.1| preprotein translocase subunit SecD [Acinetobacter baumannii AB056] gi|301511795|ref|ZP_07237032.1| preprotein translocase subunit SecD [Acinetobacter baumannii AB058] gi|332852197|ref|ZP_08434002.1| export membrane protein SecD [Acinetobacter baumannii 6013150] gi|332868165|ref|ZP_08438044.1| export membrane protein SecD [Acinetobacter baumannii 6013113] gi|332873841|ref|ZP_08441782.1| export membrane protein SecD [Acinetobacter baumannii 6014059] gi|169147631|emb|CAM85494.1| preprotein translocase, IISP family, part of the channel [Acinetobacter baumannii AYE] gi|169151217|emb|CAO99900.1| preprotein translocase, IISP family, part of the channel [Acinetobacter baumannii] gi|183211080|gb|ACC58478.1| Preprotein translocase subunit SecD [Acinetobacter baumannii ACICU] gi|193078348|gb|ABO13319.2| preprotein translocase IISP family, part of the channel [Acinetobacter baumannii ATCC 17978] gi|213057085|gb|ACJ41987.1| protein-export membrane protein SecD [Acinetobacter baumannii AB0057] gi|213985691|gb|ACJ55990.1| protein-export membrane protein SecD [Acinetobacter baumannii AB307-0294] gi|260409215|gb|EEX02517.1| protein-export membrane protein SecD [Acinetobacter baumannii ATCC 19606] gi|322509399|gb|ADX04853.1| secD [Acinetobacter baumannii 1656-2] gi|323519420|gb|ADX93801.1| preprotein translocase subunit SecD [Acinetobacter baumannii TCDC-AB0715] gi|332729327|gb|EGJ60667.1| export membrane protein SecD [Acinetobacter baumannii 6013150] gi|332733509|gb|EGJ64677.1| export membrane protein SecD [Acinetobacter baumannii 6013113] gi|332737945|gb|EGJ68831.1| export membrane protein SecD [Acinetobacter baumannii 6014059] Length = 633 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 156/535 (29%), Positives = 273/535 (51%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D ++ ++ + +LR ++ I Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ N IT+ FAD+ ++ D + + L +TT + + Sbjct: 163 KFNNLALNNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASTTGSILKLT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ ++A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDVRRQEIQAYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V + G Q L++ ++G Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYQSLDSGRQLLLQRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F + V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPK 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QA+ +I+G + + A LA MLRAG+L + V Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I KG + G +L+ ++M+V + +GL+A+F++ N+ + L ++S Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE S ++ G+ RAY+TIFDSN Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I ++ Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLK 629 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 92/245 (37%), Gaps = 4/245 (1%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 D + N + L G S Q + + + Sbjct: 391 TDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAP 450 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +VGP + +E I KG++ I + + I++ + F+ F L A L+ ++ L Sbjct: 451 MYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVFNLAMIL 509 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + G L +A ++ IG +V+ V++ +R+R+ M S + I + Sbjct: 510 TIMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVAGYDRA 566 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++ F+ + G I FA+ + GI+ + ++I + I+ IY R Sbjct: 567 YNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRR 626 Query: 829 KNARI 833 ++ Sbjct: 627 NLKKL 631 >gi|291278527|ref|YP_003495362.1| preprotein translocase subunit D [Deferribacter desulfuricans SSM1] gi|290753229|dbj|BAI79606.1| preprotein translocase subunit D [Deferribacter desulfuricans SSM1] Length = 514 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 194/540 (35%), Positives = 301/540 (55%), Gaps = 41/540 (7%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + + ++ L+ P +I LGLDLRGG +++L V Sbjct: 1 MKY-KFRWAIIFIVVIGSLISLYP---------------INEKIKLGLDLRGGMYVLLGV 44 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D D V+ L +++ L+ E IG +++ ++KI ++ D+ DK+ L Sbjct: 45 DVDKAVDAKLDTLVTQIKKDLRNEEIGFNFVKKEKDKIVIALKDNS-----VDKMKKLLS 99 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L ++ E + L + ++ +A+EQ+ ++IR R+DQ G++E Sbjct: 100 KNYPILKESS-----ISENELLVEYQLDPKEVQKIKDYAVEQAAQVIRNRVDQFGVTEPI 154 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--- 237 IQR G IL+QLPG DP R +L+G TA++ F+ V + G D Sbjct: 155 IQRQGEKNILVQLPGITDPDRALKLIGKTAQLKFYLVDDTVTSSDIASGNIPFDDIILYK 214 Query: 238 ------------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 + ++ ++G +L A + ++P V I FD GA+ F E+ Sbjct: 215 KVIDKRTGKVIENTPFALKRDAVLTGDYLVDAEVRISSQFNEPYVLIKFDSAGAKLFGEI 274 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 T++N+GK LA+VLD V +APVI +AI G+AQI+GNFT+E A LA +LRAGSLP + Sbjct: 275 TKNNVGKRLAIVLDNNVYSAPVIREAIMGGEAQITGNFTMEEAKDLAIVLRAGSLPAPVK 334 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 ++E R VG LG DSI KG A + GL+L++ FM V Y G++AD ++ LN+++ L ++ Sbjct: 335 VLENRTVGPSLGKDSIQKGIKASLIGLILVIGFMAVYYKFSGIIADIALLLNLVIILGVM 394 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 + ATLTLP IAG++L IG++VD+N+L+ ERIREE R ++ +++ GF +A STI D Sbjct: 395 GMFKATLTLPGIAGLILTIGMSVDANVLIFERIREEVRLGRTALSAIEAGFEKAMSTILD 454 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +NIT LIA VVLF FG G V+GFA+T+ + IL SMFTAI + R + + + KK + + I Sbjct: 455 ANITTLIAAVVLFQFGTGPVKGFAVTLSIGILASMFTAIFVSRTIFLQLYETKKSRKLSI 514 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 93/174 (53%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I+KGI +I I ++ ++ + +K+ + A L+L++ LG +F Sbjct: 342 GPSLGKDSIQKGIKASLIGLILVIGFMAVYYKFS-GIIADIALLLNLVIILGVMGMFKAT 400 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG SV+ V++++R+R+ ++L T++S I+ + + + ++ Sbjct: 401 LTLPGIAGLILTIGMSVDANVLIFERIREEVRLGRTALS---AIEAGFEKAMSTILDANI 457 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I+ + + +G + FA+ ++ GI+ + ++IF++ I L +Y+ + Sbjct: 458 TTLIAAVVLFQFGTGPVKGFAVTLSIGILASMFTAIFVSRTIFLQLYETKKSRK 511 >gi|15892817|ref|NP_360531.1| preprotein translocase subunit SecD [Rickettsia conorii str. Malish 7] gi|81528059|sp|Q92H77|SECD_RICCN RecName: Full=Protein-export membrane protein secD gi|15620000|gb|AAL03432.1| protein-export membrane protein secD [Rickettsia conorii str. Malish 7] Length = 518 Score = 223 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 193/530 (36%), Positives = 313/530 (59%), Gaps = 25/530 (4%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W + L + ++ ALPNF+ + +P + ++LGLDLRGG+HL+L+VD Sbjct: 3 KLPKWKIFLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLDVD 57 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D ++N ++ +D LR +++ IG ++ QN I L + + + Sbjct: 58 FDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEKLKPLKKIINK---- 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 ++ E +I + S++ ++ +++ ++QS+EI+R R+D G E T+ Sbjct: 114 --------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEPTL 165 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233 Q+ G IL+Q+PGE++PS L+ +LG TAK++FH V N + + + G + Sbjct: 166 QKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGD 225 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 S G Y+V K + G + + + VV SF+ +G++ F E+T++NIGK Sbjct: 226 NASHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNIGKR 285 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 LA+VLD ++L+AP IN AI G I+GNFT+E+A LA +LRAGSLP L I+EER++G Sbjct: 286 LAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERSIG 345 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 +LG+DSI G A + G + + +FM+ YG GL A+ ++ L ++ LALLSL ATLT Sbjct: 346 PNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQATLT 405 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI D+N+T LI Sbjct: 406 LPGIAGIILTMGMAVDANVLIYERIKEELHKGVSTLYAIRTGFESAFATILDANLTTLIV 465 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 +L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K K + Sbjct: 466 AFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I IA+ I++ + L A L L + L +LF Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + +S I + Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSTLYAIRTGFESAFATILDA 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S+I I +L+ I+ K ++ Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVQYFKPKKL 515 >gi|167855989|ref|ZP_02478735.1| preprotein translocase subunit SecF [Haemophilus parasuis 29755] gi|219871164|ref|YP_002475539.1| preprotein translocase subunit SecF [Haemophilus parasuis SH0165] gi|167852871|gb|EDS24139.1| preprotein translocase subunit SecF [Haemophilus parasuis 29755] gi|219691368|gb|ACL32591.1| preprotein translocase subunit SecF [Haemophilus parasuis SH0165] Length = 323 Score = 223 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 160/293 (54%), Gaps = 4/293 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + FM+ R+ S++ + + + T G N+G+DF GG + ++P DL+ VR Sbjct: 15 PYKLVPFMKYRYIAYVFSLIITALCVFTIVTKGFNWGLDFTGGTVIETNFSQPADLAKVR 74 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 L Q F G+K+ ++RL GD V++++ +K+ P + IQ+ E Sbjct: 75 EVLTENGYTSALVQTFGGQKDVMIRLPASAGDISLGNTVMDLIHQKL---DPEAKIQSIE 131 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I G + + +LIY+ +RF+W A G I L D+ T+G F+ Sbjct: 132 FVGPNVGEELTQGAIYGTLATLAMLLIYVGLRFEWRLATGGILALFHDVMVTIGLFSFLQ 191 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N + S +++D S+++TL R++ T Sbjct: 192 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFPKIRRANSV-EIVDISLSQTLSRTLMT 250 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S+ V + + GG + SF++ + GI SSI++A + L + R Sbjct: 251 SVTTLFVVFSLYLLGGPTLHSFSLALLIGIAFGTYSSIYVAVGVALELGLKRE 303 >gi|326387926|ref|ZP_08209532.1| preprotein translocase subunit SecD [Novosphingobium nitrogenifigens DSM 19370] gi|326207972|gb|EGD58783.1| preprotein translocase subunit SecD [Novosphingobium nitrogenifigens DSM 19370] Length = 535 Score = 223 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 185/534 (34%), Positives = 300/534 (56%), Gaps = 17/534 (3%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W V+L + + ALP+ + R+P+A+P+ +++LGLDL GGSHL+LE D Sbjct: 5 PRWKVLLLWAVTLVIAAAALPSIVD-MAGYRWPAALPEPKVNLGLDLAGGSHLMLEADPT 63 Query: 64 DFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 ++ + +R+ L + + + ++ D+ + + + + L Sbjct: 64 QVRTQRIEGMEESVRNKLHAMAQPVRISDISNNNGSLSFLIDDATKVDAVREAL---LPL 120 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 N + + + + IDQ +S A++ ++E++R+RID +G E TI Sbjct: 121 TNGAGLTGKRDWTINVVDGNRFVLSPTPEGIDQAVSQAMDTAVEVVRKRIDALGTKEPTI 180 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD---- 237 R G+ RI++Q+PG QDP L+ LLG TAK+ F V G+ D Sbjct: 181 IRSGATRIVVQVPGLQDPQGLKNLLGQTAKLEFKLVDQTADAAQVYQGIAPPGDEIVPYA 240 Query: 238 -------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 + V+ I G L A + + +T++P V I+F+ G RF ++T N+ Sbjct: 241 ETKAGQPAAKIAVKRLGGIRGDQLTNAQLSSNQQTNQPTVTITFNTDGGERFAKLTSANV 300 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 GKP A++LDG+VL+APVIN+ I G A ISGNFT ++AG LA LR+G+LP+ L +VEER Sbjct: 301 GKPFAIILDGKVLSAPVINEPILGGSAVISGNFTSDSAGQLAIALRSGALPVDLKVVEER 360 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG DLG+DSI+KG A+ G + + +F++ YG++G+ A ++ NV + L ++ ++G Sbjct: 361 TVGPDLGADSIHKGMIAMGIGTLALAVFILATYGRFGVYACVALVFNVFMILGVMGIIGT 420 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAG VL IG AVD+N+L+NERIREE + + V ++++G+ A IFD+NIT Sbjct: 421 TLTLPGIAGFVLTIGAAVDANVLINERIREERHRGRRVVQAVELGYKEAGRAIFDANITN 480 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +IA +++ FG G ++GFA+ + + I S+FTAI + R + +R + + Sbjct: 481 VIAAMLMLAFGSGPIKGFAVVLIIGIATSVFTAIMLTRMWVAQWLRRARPTELS 534 Score = 134 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 76/176 (43%), Gaps = 5/176 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I KG++ + I +A+ ++I + F + A L+ ++ LG + G Sbjct: 363 GPDLGADSIHKGMIAMGIGTLALAVFILATYG-RFGVYACVALVFNVFMILGVMGIIGTT 421 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A + IG +V+ V++ +R+R+ ++ E ++ Sbjct: 422 LTLPGIAGFVLTIGAAVDANVLINERIREERHRGRR---VVQAVELGYKEAGRAIFDANI 478 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + M +G I FA+ + GI + ++I + + + + RA+ + Sbjct: 479 TNVIAAMLMLAFGSGPIKGFAVVLIIGIATSVFTAIMLTR-MWVAQWLRRARPTEL 533 >gi|239501675|ref|ZP_04660985.1| preprotein translocase subunit SecD [Acinetobacter baumannii AB900] Length = 633 Score = 223 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 157/535 (29%), Positives = 273/535 (51%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D ++ ++ + +LR ++ I Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ N IT+ FAD+ ++ D + + L +TT + + Sbjct: 163 KFNNLALNNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASTTGSILKLT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ ++A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDVRRQEIQAYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V + G Q L++ ++G Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYQSLDSGRQLLLQRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F + V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPK 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QAI +I+G + + A LA MLRAG+L + V Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAILGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I KG + G +L+ ++M+V + +GL+A+F++ N+ + L ++S Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE S ++ G+ RAY+TIFDSN Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I ++ Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLK 629 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 92/245 (37%), Gaps = 4/245 (1%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 D + N + L G S Q + + + Sbjct: 391 TDPKTGAQTEVRTPYTESVVINAATVQAILGSTFRITGLSSPQEASELALMLRAGALAAP 450 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +VGP + +E I KG++ I + + I++ + F+ F L A L+ ++ L Sbjct: 451 MYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVFNLAMIL 509 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + G L +A ++ IG +V+ V++ +R+R+ M S + I + Sbjct: 510 TIMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVAGYDRA 566 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++ F+ + G I FA+ + GI+ + ++I + I+ IY R Sbjct: 567 YNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRR 626 Query: 829 KNARI 833 ++ Sbjct: 627 NLKKL 631 >gi|157803567|ref|YP_001492116.1| preprotein translocase subunit SecD [Rickettsia canadensis str. McKiel] gi|157784830|gb|ABV73331.1| protein export protein SecD [Rickettsia canadensis str. McKiel] Length = 520 Score = 223 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 199/528 (37%), Positives = 322/528 (60%), Gaps = 23/528 (4%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W + L + + ALPNF+ + +P + ++LGLDLRGG+HL+L+VD + Sbjct: 5 PKWKIFLSIICTVFATICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLDVDFE 59 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 ++N ++ +D LR +++ IG ++ QN+ ++ KE ++ + ++ Sbjct: 60 SYLNDSMENLADTLRKNFREDKIGYKNLLVNQNQNSIQLELRTSKE--LKQLKKIINKID 117 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 S+ ++V E +I + S + ++ +++ ++QS+EI+R R+D G E T+Q+ Sbjct: 118 SE--------IIVEVNENKIKLRYSDSRLNDLLNKVVDQSIEIVRMRVDSTGTKEPTLQK 169 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL--------RD 235 G IL+Q+PGE++PS L+ +LG TAK++FH V N + + + G + + Sbjct: 170 QGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLIKGDSE 229 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 S G Y+V K + G + + + VV SF+ +G++ F E+T++N GK LA Sbjct: 230 SHGEYYVVIKKKVVLGGDQLTTASVSFDQNSQAVVTFSFNNLGSKIFGEITKNNTGKRLA 289 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLD ++L+AP+IN AI G I+GNFT+E+A LA +LRAGSLP LNI+EER++G + Sbjct: 290 IVLDNKLLSAPMINGAIMGGSGIITGNFTVESAHELALLLRAGSLPAPLNIIEERSIGPN 349 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG+DSI G A + G + + +FMI YG GL A+ ++ L ++ LALLSL ATLTLP Sbjct: 350 LGADSIESGKKAGLIGFIAVCIFMIWSYGVLGLFANIALSLALLYILALLSLFQATLTLP 409 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGI+L IG+AVD+N+L+ ERI+EE K S ++ GF+ A++TI DSN+T LI Sbjct: 410 GIAGIILTIGMAVDANVLIYERIKEELHKGVSNLYAIRTGFASAFATILDSNLTTLIVAS 469 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 +L+ FG GA++GFAIT+ + I+ SMF+AI I + ++ ++Y K K + Sbjct: 470 LLYIFGVGAIKGFAITLTIGIISSMFSAIIITKLLIDIWVKYFKSKKL 517 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I IA+ I++ + L A L L + L +LF Sbjct: 345 SIGPNLGADSIESGKKAGLIGFIAVCIFMIWSYGVL-GLFANIALSLALLYILALLSLFQ 403 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++Y+R+++ + +S I + + Sbjct: 404 ATLTLPGIAGIILTIGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFASAFATILDS 460 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FAI + GI+ + S+I I +L+ I+ K+ ++ Sbjct: 461 NLTTLIVASLLYIFGVGAIKGFAITLTIGIISSMFSAI-IITKLLIDIWVKYFKSKKL 517 >gi|303256881|ref|ZP_07342895.1| protein-export membrane protein SecD [Burkholderiales bacterium 1_1_47] gi|330998870|ref|ZP_08322597.1| export membrane protein SecD [Parasutterella excrementihominis YIT 11859] gi|302860372|gb|EFL83449.1| protein-export membrane protein SecD [Burkholderiales bacterium 1_1_47] gi|329576084|gb|EGG57603.1| export membrane protein SecD [Parasutterella excrementihominis YIT 11859] Length = 632 Score = 223 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 176/506 (34%), Positives = 286/506 (56%), Gaps = 21/506 (4%) Query: 30 SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ P+ + K + LGLDLRGG H +L VD V ++ + E+R+ L+ I Sbjct: 115 NLVPNTPTWLLKINALPMYLGLDLRGGVHFLLAVDMKAAVTKRIEAATGEVRTLLRDHKI 174 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + ++ + + +SF + + E D + D + I Sbjct: 175 RHAGIVRVGDTLEISFRNEQDLEAAMDVLRNR--------QTDLTFAKEDQNGKFMIRAT 226 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +SQ + V S+A++Q++ + RI+++G++E I + G+ RI++QLPG QD ++ + +L Sbjct: 227 MSQKAMSDVQSYALKQNVATLHNRINELGVAEPVIAQQGADRIVVQLPGVQDTAKAKDIL 286 Query: 207 GTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 G TA + V + FG +D +G LV+ +V ++G +LN A Sbjct: 287 GRTATLEVRMVDDSPEALAQLSQGTVPFGTERFKDREGRDILVKRQVVLTGDNLNDAQPG 346 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSGK 316 FD +TH+P V+++ D GAR F +VTR+N+GK + G V+TAPVI Q I G+ Sbjct: 347 FDNQTHEPTVNLTLDAKGARIFKDVTRENVGKRMAIILFEKGKGEVVTAPVIRQEIGGGR 406 Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376 QISG T A A +LRAGSL + I+EER VG LG+ +I G + + G + + Sbjct: 407 VQISGRMTTVEATDTALLLRAGSLAAPMEIIEERLVGPSLGAANIKAGFESTLWGFIAVS 466 Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 +FM++ Y +G+ + ++ N+ L +A+LS+L ATLTLP IA + L +G+AVD+N+L+NE Sbjct: 467 VFMVIYYHLFGVFSAIALTCNLFLLVAILSMLQATLTLPGIAAMALTLGMAVDANVLINE 526 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 RIREE R+N++ ++ G+ A++TI DSNIT+LIA + L FG G VRGFA+ L I Sbjct: 527 RIREELRENRTPQQAIKEGYDMAFNTILDSNITSLIAGIALLIFGSGPVRGFAVVHCLGI 586 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKS 522 L S+FT++ + RA++ +K + Sbjct: 587 LTSIFTSVMVSRALVNLWYGRRKKLT 612 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 86/208 (41%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +VGP + I+ G + IA+ Sbjct: 407 VQISGRMTTVEATDTALLLRAGSLAAPMEIIEERLVGPSLGAANIKAGFESTLWGFIAVS 466 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ I + F + + L ++ + ++ L +AA+ +G +V+ V++ Sbjct: 467 VFMVIYYHL-FGVFSAIALTCNLFLLVAILSMLQATLTLPGIAAMALTLGMAVDANVLIN 525 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I + + + +++ + I+ + + ++G + FA+ Sbjct: 526 ERIREELRENR---TPQQAIKEGYDMAFNTILDSNITSLIAGIALLIFGSGPVRGFAVVH 582 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + +S+ ++ ++ Y R K Sbjct: 583 CLGILTSIFTSVMVSRALVNLWYGRRKK 610 Score = 40.4 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 44/156 (28%), Gaps = 31/156 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W IL ++I + + LPNF +S ++V Sbjct: 3 RYPLWKYILIAVILIVAAVYTLPNFYGESPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117 + + L I F QN + + FA E + + Sbjct: 38 PGKATVKVTEQTLKTVEDALAAAQIKPNGVFFEQGAQQNSVRVRFAP-TDGE-LQLRSRD 95 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153 L+ + DP + + + +L N + Sbjct: 96 VLEKALNPDPADPSYIVALNLVPNTPTWLLKINALP 131 >gi|323697902|ref|ZP_08109814.1| protein-export membrane protein SecD [Desulfovibrio sp. ND132] gi|323457834|gb|EGB13699.1| protein-export membrane protein SecD [Desulfovibrio desulfuricans ND132] Length = 531 Score = 223 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 178/532 (33%), Positives = 294/532 (55%), Gaps = 23/532 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M++ I+ + +GL LP+ LP +P N I+LGLDL+GG +L L V Sbjct: 1 MQSLRLRAIIALFVVLLGLAFMLPS-LPGVKDSSLGKVLPGNGINLGLDLKGGIYLTLGV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFL 119 D ++ L D+L++ +++ + + +N I ++ S K+ + Sbjct: 60 DMKTAMDNNLARLGDDLKASAREQDVYILRPTVLNENAIEVTLIKSEQKDAFEGVIKD-- 117 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 +++ + + + + + +V ++Q+++ IR RIDQ G++E Sbjct: 118 -----YTPFTIEQSTPLDGDKVKYVLSVPPKYRTEVEKLTMDQAIKTIRNRIDQFGVAEP 172 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV--------- 230 I++ +RI +QLPG DP R +++G TA + F V + K G+ Sbjct: 173 EIRKQQDNRIQVQLPGLADPERAIRIIGQTAHLEFKMVDDSADLKKAQQGILSPGRELAD 232 Query: 231 ----RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 + + +++ ++G +++ A D V ++F+ GA+ F ++T Sbjct: 233 LLHRQANGTYAKSPIVLKKDAVLTGEYVSDAQVRLDQWN-NAYVALTFNARGAKIFTDLT 291 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 DN+ K +A+VLDG+V +APVI + I GKA I+GNFT E A LA +LRAGSLP + I Sbjct: 292 ADNVNKRMAIVLDGQVYSAPVIRERIAGGKASITGNFTREEARDLAVVLRAGSLPAPVTI 351 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 +E+R+VG LG +SI G + + G+ L++L M+V YG G+VAD + LN++L + L+ Sbjct: 352 LEQRSVGPSLGQESINSGIMSAMVGMALVLLCMVVYYGFGGVVADIVLVLNIMLIMGGLA 411 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 GATLTLP IAGI+L IG+AVD+N+++ ERIREE R+ S S+ G+ RA TI D+ Sbjct: 412 AFGATLTLPGIAGIILTIGMAVDANVIIYERIREELRRGLSPKQSVAEGYGRATLTILDA 471 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 N+T +IA ++L+ FG G +RGFA+T+ L I+ SMFTAI + R + ++ + Sbjct: 472 NVTTVIAAIILYQFGTGPIRGFAVTLTLGIITSMFTAIFVSRILFDLYLKNR 523 Score = 143 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 88/180 (48%), Gaps = 4/180 (2%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VGP + +E I GI+ ++ +L+ + + + + + A L+L+I +G A Sbjct: 354 QRSVGPSLGQESINSGIMSAMVGMALVLLCMVVYYGFG-GVVADIVLVLNIMLIMGGLAA 412 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 FG L +A ++ IG +V+ V++Y+R+R+ ++ +S + + + + Sbjct: 413 FGATLTLPGIAGIILTIGMAVDANVIIYERIREELR---RGLSPKQSVAEGYGRATLTIL 469 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I+ + + +G I FA+ + GI+ + ++IF++ + RA NA++ Sbjct: 470 DANVTTVIAAIILYQFGTGPIRGFAVTLTLGIITSMFTAIFVSRILFDLYLKNRADNAKL 529 >gi|325123438|gb|ADY82961.1| preprotein translocase subunit SecD [Acinetobacter calcoaceticus PHEA-2] Length = 633 Score = 223 bits (566), Expect = 2e-55, Method: Composition-based stats. Identities = 158/535 (29%), Positives = 272/535 (50%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D V ++ + +LR ++ I Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAVAQRMETSATDLRRQFRENKI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ N IT+ FAD+ ++ D + + L ++T + + Sbjct: 163 KFNSLALTNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASSTGSTLKLT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ S+A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V + G Q L++ ++G Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYESLDSGRQLLLQRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F + V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKINYVTDPK 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QA+ +I+G + + A LA MLRAG+L + V Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I KG + G +L+ ++M+V + +GL+A+F++ N+ + L ++S Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRVFGLIANFALVFNLAMILTVMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE S ++ G+ RAY+TIFDSN Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I ++ Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLK 629 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 N D + N + L G S Q + + Sbjct: 386 KINYVTDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAG 445 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +VGP + +E I KG++ I + + I++ + F+ F L A L+ + Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRV-FGLIANFALVFN 504 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + L + G L +A ++ IG +V+ V++ +R+R+ M S + I Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVA 561 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ F+ + G I FA+ + GI+ + ++I + I+ I Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQII 621 Query: 824 YDWRAKNARI 833 Y R ++ Sbjct: 622 YGKRRNLKKL 631 Score = 42.8 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44 MR W +L ++ I L ALP+ P + A +I Sbjct: 1 MRYPAWKYLLILVVLVISTLYALPSLYPDEPAVQISGAKAGTQI 44 >gi|238752765|ref|ZP_04614234.1| Protein-export membrane protein secF [Yersinia rohdei ATCC 43380] gi|238709023|gb|EEQ01272.1| Protein-export membrane protein secF [Yersinia rohdei ATCC 43380] Length = 322 Score = 223 bits (566), Expect = 2e-55, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 166/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR GIS+L + SI ++ G N+G+DF GG + + ++ Sbjct: 5 YTVEQLNYGRRVYDFMRWDNVAFGISLLLLVASIAIISVKGFNWGLDFTGGTVIEINLDK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R LE+ QNF ++ +VR+ G Q +++ + Sbjct: 65 PADLDQLRDTLEAAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + ++++ + +L+Y+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRVEFVGPSVGSDLAQAGGMALLVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|206579173|ref|YP_002240124.1| protein-export membrane protein SecF [Klebsiella pneumoniae 342] gi|288936873|ref|YP_003440932.1| protein-export membrane protein SecF [Klebsiella variicola At-22] gi|290510071|ref|ZP_06549441.1| preprotein translocase SecF subunit [Klebsiella sp. 1_1_55] gi|206568231|gb|ACI10007.1| protein-export membrane protein SecF [Klebsiella pneumoniae 342] gi|288891582|gb|ADC59900.1| protein-export membrane protein SecF [Klebsiella variicola At-22] gi|289776787|gb|EFD84785.1| preprotein translocase SecF subunit [Klebsiella sp. 1_1_55] Length = 323 Score = 223 bits (566), Expect = 2e-55, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 163/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS I SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVWDFMRWDYWAFGISGFLLIVSIAIIGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 PVDL +R +L+ + QNF ++ +VR+ +V+Q ++V Sbjct: 65 PVDLDQMRDSLQKAGFEEPQVQNFGSSRDIMVRMPPVHDANVSQELGSKVVTVINESTSQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + +I + + +LIY+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 MGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG ++ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLFLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|310778167|ref|YP_003966500.1| protein translocase subunit secF [Ilyobacter polytropus DSM 2926] gi|309747490|gb|ADO82152.1| protein translocase subunit secF [Ilyobacter polytropus DSM 2926] Length = 296 Score = 223 bits (566), Expect = 2e-55, Method: Composition-based stats. Identities = 84/294 (28%), Positives = 140/294 (47%), Gaps = 2/294 (0%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + I + +G+S I ++ L GLN+GIDF GG + V L V S Sbjct: 1 MKIDIINHTTKWLGVSAFVVIFAVVGLLFKGLNFGIDFSGGNLYQFKFEKNVTLGEVNSF 60 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 + + + S + +Q + V Sbjct: 61 FDEVSKDYPQLDGKSRKVQVSGENTVILRTSEMDENQKNDFLNTVENFG-KYDLQKADKV 119 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 G I EL +I+ I +++YI IRF++ FA+ A+ L D+ ++G AL G E Sbjct: 120 GATIGEELKSSAFYALILGCILIVLYITIRFEFKFAMAAVIALFHDVIISVGGIALLGYE 179 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 N +AAVLT++GYS+ND +VV+DR+R+ +K S + I+ SIN+ + RS+ TS+ Sbjct: 180 VNTPFIAAVLTILGYSINDTIVVFDRIRETLKR-KKSPELGEAINISINQVMTRSINTSL 238 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F++V+ + V+GG + +F + G+V SSIF+A+P++ + + K A Sbjct: 239 TTFLAVIAILVFGGESLKTFITTLLIGVVAGTYSSIFVASPLVYLLEKNKDKEA 292 >gi|157369307|ref|YP_001477296.1| preprotein translocase subunit SecF [Serratia proteamaculans 568] gi|157321071|gb|ABV40168.1| protein-export membrane protein SecF [Serratia proteamaculans 568] Length = 322 Score = 223 bits (566), Expect = 2e-55, Method: Composition-based stats. Identities = 94/301 (31%), Positives = 167/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + GIS+L I SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYVAFGISLLLLIASIAIMSVRGFNWGLDFTGGTVIEISLEQ 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P +L ++R LE D QNF ++ +VR+ G Q +++ + Sbjct: 65 PANLDLMRDTLEKAGFQDPIIQNFGSSRDVMVRMPPAIGT-AGQELGNKVISVINDSVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + EL + G + ++++ I +LIY+ RF+W ALGA+ L D+ T Sbjct: 124 NATVKRIEFVGPSVGTELAQNGGMALLVALICILIYVGFRFEWRLALGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 LGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTLMTSGTTLMVVLMLYIFGGAMLHGFSLAMLIGVSIGTISSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|259419271|ref|ZP_05743188.1| protein-export membrane protein SecF [Silicibacter sp. TrichCH4B] gi|259345493|gb|EEW57347.1| protein-export membrane protein SecF [Silicibacter sp. TrichCH4B] Length = 322 Score = 223 bits (566), Expect = 2e-55, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 177/305 (58%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P+ + F R +GIS + + GLN+GIDF+GG + A + Sbjct: 1 MRLKLVPEGTSFDFFRLWKLWLGISAMMVVIGFASFALQGLNFGIDFRGGTTIRTEATQD 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642 +D+ V R + L++GDI+ ++R++ Q + V+ V+ + Sbjct: 61 LDIGVYRDAIAPLELGDITITEVFDPTFDEDQHVAMIRIEAQEDGEALSSSVIADVQGAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + P + E VGPK+S EL++ I+ V ++ A+L+YIW+RF+W FALGA+ L+ Sbjct: 121 DAVAPGIKFISVESVGPKVSGELVQTAIMAVALAIGAVLVYIWLRFEWQFALGAVAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I+F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y ++++ Sbjct: 181 DVILTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRY-KQKPLAEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINETL R++ TS+ ++++ + V GG VI F M +G+VV SSIF+A+ ILL+ Sbjct: 240 ISINETLSRTMMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVVVGTYSSIFVASTILLW 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|317484713|ref|ZP_07943614.1| protein-export membrane protein SecD [Bilophila wadsworthia 3_1_6] gi|316924069|gb|EFV45254.1| protein-export membrane protein SecD [Bilophila wadsworthia 3_1_6] Length = 528 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 190/534 (35%), Positives = 289/534 (54%), Gaps = 15/534 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M++ W +++ ++ ++ LP+ LP + +P RISLGLDL+GG HL L V Sbjct: 1 MKSLSWRIVVSLLVLLASIVYVLPS-LPGVGGSSLGNLLPDARISLGLDLKGGMHLTLGV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + D V+ L + ELR+ ++GI V R + L F R ++ L Sbjct: 60 EVDKAVSNSLSLTGQELRAQASEKGITVLRSRLTPDN-RLEFLLPR--AEQRTELQELLS 116 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +L V + + ++ A++Q++ IR RIDQ G++E Sbjct: 117 KDFPQL--AVDSPTQVEGGGLRFTAAFTPAAKAKIEEMALDQAVRTIRNRIDQFGVAEPD 174 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG---------FMFGVR 231 I++ RI IQLPG D R QL+G TA+++FH V + + +G M VR Sbjct: 175 IRKQADFRIQIQLPGLTDSKRAIQLVGQTAQLTFHLVRDDVNPQGILPPGVALFPMVTVR 234 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + + ++ + ++G + A FD + +KP V +SF+ GA F +T ++I Sbjct: 235 PDGSTSESMIALDKEPLMTGEDVADARPTFDNRDNKPSVGLSFNSRGAAMFERITGEHIH 294 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K +A+VLDG+V +AP I I GKA I+G+FT A LA +LRAGSLP + ++EER Sbjct: 295 KRMAIVLDGKVHSAPTIQSRIGGGKASITGSFTPTEAQDLAIVLRAGSLPAPVTVLEERT 354 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG LG +SI G A G + +++ M + YG GL+AD + + + +A L+ GAT Sbjct: 355 VGPSLGKESIESGILAAAVGGIAVMVVMPLYYGLAGLLADVMLVFTITMLMAGLAAFGAT 414 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGIVL IG++VD+N+L+ ERIREE R+ ++ +GF RA +I DSN+T + Sbjct: 415 LTLPGIAGIVLTIGMSVDANVLIFERIREEIRQGLKPLEAVAVGFDRATISIVDSNLTTI 474 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IA +L+ FG G VRGFA+T+ L I+ SMFTAI + R + K + I Sbjct: 475 IAAAILYQFGTGPVRGFAVTLSLGIVASMFTAIFVSRTAFGLWLGGNDGKKLSI 528 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 81/174 (46%), Gaps = 5/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + +E I GI+ + IA+++ + + + L A L+ IT + A FG Sbjct: 356 GPSLGKESIESGILAAAVGGIAVMVVMPLYYGL-AGLLADVMLVFTITMLMAGLAAFGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG SV+ V++++R+R+ ++ + + + V +++ Sbjct: 415 LTLPGIAGIVLTIGMSVDANVLIFERIREEIRQGLK---PLEAVAVGFDRATISIVDSNL 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 I+ + +G + FA+ ++ GIV + ++IF++ L++ K Sbjct: 472 TTIIAAAILYQFGTGPVRGFAVTLSLGIVASMFTAIFVSRTAFGLWLGGNDGKK 525 >gi|86145579|ref|ZP_01063909.1| protein export protein SecF [Vibrio sp. MED222] gi|85836550|gb|EAQ54676.1| protein export protein SecF [Vibrio sp. MED222] Length = 315 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 163/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SIL +I L T LN+G+DF GG + V P Sbjct: 1 MFQILKADKMIDFMRWSKVAFLFSILMIGTAIYTLTTKSLNWGLDFTGGTLIEVGFEEPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +RS LE+ GD + QNF + +VRL+ + G +T +++ Sbjct: 61 NLPDIRSALEAEGFGDATVQNFGSAREVMVRLRPRDG-VAGETLGNQILSAIKDGTGEQV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L IE +LT VAA+LT++GYS+ND +VV+DR+R+N + + ++++ SI +TL Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-EVLNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + V GG++I FA + GI V SSI++A+ + + + R Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITRE 297 >gi|165933479|ref|YP_001650268.1| preprotein translocase subunit SecD [Rickettsia rickettsii str. Iowa] gi|165908566|gb|ABY72862.1| protein translocase subunit [Rickettsia rickettsii str. Iowa] Length = 518 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 193/532 (36%), Positives = 314/532 (59%), Gaps = 26/532 (4%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+N W + L + ++ ALPNF+ +P + ++LGLDLRGG+HL+L+ Sbjct: 1 MQNLPKWKIFLSIICTVFAVICALPNFMQVHS-----KFLPHDSVNLGLDLRGGAHLLLD 55 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 VD D ++N ++ +D LR +++ IG ++ QN I L + + + Sbjct: 56 VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEKLKLLKKIINK-- 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 ++ E +I + S++ ++ +++ ++QS+EI+R R+D G E Sbjct: 114 ----------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233 T+Q+ G IL+Q+PGE++PS L+ +LG TAK++FH V N + + + G + Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223 Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +S G Y+V K + G + + + VV SF+ +G++ F +T++N G Sbjct: 224 GDNESHGEYYVVIKKKVVLGGDKLTTASASFDQNSQAVVAFSFNNLGSKIFGAITKNNTG 283 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K LA+VLD ++L+AP+IN AI G I+GNFT+E+A LA +LRAGSLP L I+EER+ Sbjct: 284 KRLAIVLDNKLLSAPMINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLRIIEERS 343 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 +G +LG+DSI G A + G + + +FM+ YG GL A+ ++ L ++ LALLSL AT Sbjct: 344 IGPNLGADSIESGKKAGLIGFIAVCVFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI D+N+T L Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTL 463 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 I +L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K K + Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515 Score = 129 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I IA+ +++ + L A L L + L +LF Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCVFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + +S I + Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDA 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S+I I +L+ I+ K ++ Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVQYFKPKKL 515 >gi|315299575|gb|EFU58823.1| protein-export membrane protein SecF [Escherichia coli MS 16-3] Length = 338 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L I +I ++ G N+G+DF GG + + + Sbjct: 20 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 79 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q +++K Sbjct: 80 PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 139 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + +++L+Y+ RF+W A G + L D+ T Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGGVFALAHDVIIT 199 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 259 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318 Query: 828 A 828 Sbjct: 319 E 319 >gi|291085771|ref|ZP_06354014.2| protein-export membrane protein SecF [Citrobacter youngae ATCC 29220] gi|291069797|gb|EFE07906.1| protein-export membrane protein SecF [Citrobacter youngae ATCC 29220] Length = 338 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 160/301 (53%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS I ++ ++ G N+G+DF GG + + + Sbjct: 20 YTVEQLNHGRKVWDFMRWDYWAFGISGFLLIAAVVIMGVRGFNWGLDFTGGTVIEITLEK 79 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P D+ V+R LE + QNF + +VR+ G Q +++ Sbjct: 80 PADMDVMRDALEKAGFVEPLLQNFGSSHDIMVRMPPTEGADGGQVLGSKVLSVINESTNQ 139 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + I++L+Y+ RF+W A G + L D+ T Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALMAALISILVYVGFRFEWRLAAGVVIALAHDVIIT 199 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 259 TLHRTLITSGTTLMVILMLFLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318 Query: 828 A 828 Sbjct: 319 E 319 >gi|332160722|ref|YP_004297299.1| preprotein translocase subunit SecF [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664952|gb|ADZ41596.1| preprotein translocase subunit SecF [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863962|emb|CBX74046.1| protein-export membrane protein secF [Yersinia enterocolitica W22703] Length = 322 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 167/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + G+S+L + SI ++ T G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEISLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R LE+ QNF ++ +VR+ G Q +++ + Sbjct: 65 PADLDQLRDTLEAAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + +I++ + +L+Y+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALIVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|157828752|ref|YP_001494994.1| preprotein translocase subunit SecD [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801233|gb|ABV76486.1| preprotein translocase subunit SecD [Rickettsia rickettsii str. 'Sheila Smith'] Length = 518 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 193/532 (36%), Positives = 314/532 (59%), Gaps = 26/532 (4%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+N W + L + ++ ALPNF+ +P + ++LGLDLRGG+HL+L+ Sbjct: 1 MQNLPKWKIFLSIICTVFAVICALPNFMQVHS-----KFLPHDSVNLGLDLRGGAHLLLD 55 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 VD D ++N ++ +D LR +++ IG ++ QN I L + + + Sbjct: 56 VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEKLKPLKKIINK-- 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 ++ E +I + S++ ++ +++ ++QS+EI+R R+D G E Sbjct: 114 ----------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233 T+Q+ G IL+Q+PGE++PS L+ +LG TAK++FH V N + + + G + Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223 Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +S G Y+V K + G + + + VV SF+ +G++ F +T++N G Sbjct: 224 GDNESHGEYYVVIKKKVVLGGDKLTTASASFDQNSQAVVAFSFNNLGSKIFGAITKNNTG 283 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K LA+VLD ++L+AP+IN AI G I+GNFT+E+A LA +LRAGSLP L I+EER+ Sbjct: 284 KRLAIVLDNKLLSAPMINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLRIIEERS 343 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 +G +LG+DSI G A + G + + +FM+ YG GL A+ ++ L ++ LALLSL AT Sbjct: 344 IGPNLGADSIESGKKAGLIGFIAVCVFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI D+N+T L Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTL 463 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 I +L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K K + Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I IA+ +++ + L A L L + L +LF Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCVFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + +S I + Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDA 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S+I I +L+ I+ K ++ Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITK-LLIDIWVQYFKPKKL 515 >gi|307946885|ref|ZP_07662220.1| protein-export membrane protein SecF [Roseibium sp. TrichSKD4] gi|307770549|gb|EFO29775.1| protein-export membrane protein SecF [Roseibium sp. TrichSKD4] Length = 319 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 124/295 (42%), Positives = 186/295 (63%), Gaps = 3/295 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L+PD +FM R +SI+ I SI L T GLNYGIDFKGG + + D+ Sbjct: 5 RLVPDNTKFRFMWLRSVSFPLSIVLVIASIALFVTVGLNYGIDFKGGTIVEIKTEGAADI 64 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 +R++L +L +GD+ Q F GE L+R++ QPG +AQ V+ ++ E Sbjct: 65 GKIRTDLGTLNLGDVQVQQFGGEDEVLIRVEEQPGGELAQQAVVGKIRTLFAEDGYDF-- 122 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + E+VGP++S EL + G + V S +A+L YIW RF+W FA+GAI T D+ T+G F Sbjct: 123 RRVEVVGPRVSGELAQAGAIAVAASLLAILFYIWFRFEWQFAVGAILTTANDVIITVGLF 182 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 + ++F+L+++AAVLT+IGYS+ND VVVYDR+R+N++ Y + DL+D SIN+TL R Sbjct: 183 VVLQLDFSLSSIAAVLTIIGYSLNDTVVVYDRIRENLRKY-KKMDLPDLLDLSINQTLSR 241 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +V TS+ ++++ + V+GG VI SF + M FGI++ SSIF+AAP L+ + Sbjct: 242 TVLTSVTTLLALISLYVFGGEVIQSFTLAMIFGILIGTYSSIFLAAPFLIILKLR 296 >gi|323491589|ref|ZP_08096768.1| preprotein translocase subunit SecF [Vibrio brasiliensis LMG 20546] gi|323314165|gb|EGA67250.1| preprotein translocase subunit SecF [Vibrio brasiliensis LMG 20546] Length = 315 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 164/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR + SIL SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAENTIDFMRWSKFAFVFSILMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +RS L++ GD + QNF ++ +VRL+ + D +T +++ Sbjct: 61 NLEDIRSALDAKGFGDATVQNFGSARDVMVRLRPRD-DMAGETLGNQIISAIKQGTGENV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D+++ SI +TL Sbjct: 180 VFSMMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGITKE 297 >gi|332307525|ref|YP_004435376.1| protein-export membrane protein SecD [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174854|gb|AEE24108.1| protein-export membrane protein SecD [Glaciecola agarilytica 4H-3-7+YE-5] Length = 614 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 158/529 (29%), Positives = 281/529 (53%), Gaps = 36/529 (6%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 N P + + A+ + LGLDLRGG H ++EVD + VN + + RS Sbjct: 99 YYVAMNLAPDTP--AWLEAIGGAPMKLGLDLRGGVHFLMEVDMNSAVNKSFEDMVSDFRS 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L++EGI ++RQ++ + + F D + + + + Sbjct: 157 ALREEGIRYRTVRQVEGGVEIFFRDQDTLDKAEFFLRNR-----------NRDLVFTEKN 205 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + +I + +S+ + + +A++Q++ IIR R++Q+G++E ++Q+ G RI +QLPG QD Sbjct: 206 DLKIVVSMSEQKLAETRDYAVKQNITIIRNRVNQLGVAEPSVQKQGVDRIAVQLPGIQDT 265 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254 +R +++L TA + F V ++ + G + D G L++ K+ ++G H+ Sbjct: 266 ARAKEILNATATLEFRSVDLDHDVRDAVAGRVPAGSELVLDQQGQPQLLKKKIILTGNHI 325 Query: 255 NGATANFDPKTHKPVVDISFDEMGARR-----------------FFEVTRDNIGKPLAVV 297 A ++ D V + G++ ++ T + + Sbjct: 326 IDANSSADEYGIPQVNISLDSKGGSKMSQFTKDSIGKPMATVFIEYKSTGERDANDKLIF 385 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 R + + QA +I+G + + A L+ +LRAG+L + IVEER VG LG Sbjct: 386 EAKREVISIATIQARLGSSFRITGLDSPQEAHNLSLLLRAGALIAPIQIVEERTVGPSLG 445 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPS 416 ++I GT AI+ G V +++FM++ Y +G+VA+ ++ LN+++ + ++S++ ATL+LP Sbjct: 446 KENIALGTQAIIWGFVAVLIFMLIYYKAFGVVANLALTLNLVMIVGIMSMIPGATLSLPG 505 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +AGIVL +G+AVD+N+L+ ERIREE R+ +S ++ G+ A+STI D+NIT IA ++ Sbjct: 506 MAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIHHGYDSAFSTILDANITTFIAGLI 565 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF G G ++GF+IT+ + I SMFTAI + RA++ K +K + I Sbjct: 566 LFAVGTGPIKGFSITLMIGIATSMFTAIFVTRAVVNAWCGGKPLKKLSI 614 Score = 154 bits (388), Expect = 5e-35, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 82/175 (46%), Gaps = 5/175 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716 GP + +E I G +I +A+LI++ I +K F + A L L++ +G ++ G Sbjct: 441 GPSLGKENIALGTQAIIWGFVAVLIFMLIYYK-AFGVVANLALTLNLVMIVGIMSMIPGA 499 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 +L +A ++ +G +V+ V++++R+R+ ++ S + I + + + Sbjct: 500 TLSLPGMAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIHHGYDSAFSTILDAN 556 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + FI+ L + G I F+I + GI + ++IF+ ++ + Sbjct: 557 ITTFIAGLILFAVGTGPIKGFSITLMIGIATSMFTAIFVTRAVVNAWCGGKPLKK 611 >gi|91209477|ref|YP_539463.1| preprotein translocase subunit SecF [Escherichia coli UTI89] gi|110640670|ref|YP_668398.1| preprotein translocase subunit SecF [Escherichia coli 536] gi|117622670|ref|YP_851583.1| preprotein translocase subunit SecF [Escherichia coli APEC O1] gi|227884583|ref|ZP_04002388.1| preprotein translocase subunit SecF [Escherichia coli 83972] gi|237707597|ref|ZP_04538078.1| protein-export membrane protein SecF [Escherichia sp. 3_2_53FAA] gi|293403528|ref|ZP_06647619.1| preprotein translocase [Escherichia coli FVEC1412] gi|293408555|ref|ZP_06652394.1| predicted protein [Escherichia coli B354] gi|293418476|ref|ZP_06660911.1| preprotein translocase SecF subunit [Escherichia coli B088] gi|298379140|ref|ZP_06989021.1| preprotein translocase SecF subunit [Escherichia coli FVEC1302] gi|300818268|ref|ZP_07098479.1| protein-export membrane protein SecF [Escherichia coli MS 107-1] gi|300820353|ref|ZP_07100505.1| protein-export membrane protein SecF [Escherichia coli MS 119-7] gi|300900475|ref|ZP_07118642.1| protein-export membrane protein SecF [Escherichia coli MS 198-1] gi|300903327|ref|ZP_07121255.1| protein-export membrane protein SecF [Escherichia coli MS 84-1] gi|300918212|ref|ZP_07134818.1| protein-export membrane protein SecF [Escherichia coli MS 115-1] gi|300924128|ref|ZP_07140120.1| protein-export membrane protein SecF [Escherichia coli MS 182-1] gi|300930297|ref|ZP_07145710.1| protein-export membrane protein SecF [Escherichia coli MS 187-1] gi|300936396|ref|ZP_07151324.1| protein-export membrane protein SecF [Escherichia coli MS 21-1] gi|300947941|ref|ZP_07162088.1| protein-export membrane protein SecF [Escherichia coli MS 116-1] gi|300957972|ref|ZP_07170138.1| protein-export membrane protein SecF [Escherichia coli MS 175-1] gi|300988039|ref|ZP_07178519.1| protein-export membrane protein SecF [Escherichia coli MS 45-1] gi|300997404|ref|ZP_07181744.1| protein-export membrane protein SecF [Escherichia coli MS 200-1] gi|301025426|ref|ZP_07188977.1| protein-export membrane protein SecF [Escherichia coli MS 69-1] gi|301049609|ref|ZP_07196560.1| protein-export membrane protein SecF [Escherichia coli MS 185-1] gi|301301556|ref|ZP_07207691.1| protein-export membrane protein SecF [Escherichia coli MS 124-1] gi|301330731|ref|ZP_07223333.1| protein-export membrane protein SecF [Escherichia coli MS 78-1] gi|301647329|ref|ZP_07247142.1| protein-export membrane protein SecF [Escherichia coli MS 146-1] gi|309794867|ref|ZP_07689288.1| protein-export membrane protein SecF [Escherichia coli MS 145-7] gi|331640925|ref|ZP_08342060.1| protein-export membrane protein SecF [Escherichia coli H736] gi|331645582|ref|ZP_08346686.1| protein-export membrane protein SecF [Escherichia coli M605] gi|331651342|ref|ZP_08352367.1| protein-export membrane protein SecF [Escherichia coli M718] gi|331676076|ref|ZP_08376788.1| protein-export membrane protein SecF [Escherichia coli H591] gi|332281555|ref|ZP_08393968.1| Protein-export membrane protein secF [Shigella sp. D9] gi|26106812|gb|AAN78997.1|AE016756_180 Protein-export membrane protein secF [Escherichia coli CFT073] gi|1773093|gb|AAB40165.1| protein-export membrane protein secF [Escherichia coli] gi|91071051|gb|ABE05932.1| protein-export membrane protein SecF [Escherichia coli UTI89] gi|110342262|gb|ABG68499.1| protein-export membrane protein SecF [Escherichia coli 536] gi|115511794|gb|ABI99868.1| export membrane protein SecF [Escherichia coli APEC O1] gi|226898807|gb|EEH85066.1| protein-export membrane protein SecF [Escherichia sp. 3_2_53FAA] gi|227838669|gb|EEJ49135.1| preprotein translocase subunit SecF [Escherichia coli 83972] gi|291325004|gb|EFE64419.1| preprotein translocase SecF subunit [Escherichia coli B088] gi|291429381|gb|EFF02401.1| preprotein translocase [Escherichia coli FVEC1412] gi|291471733|gb|EFF14216.1| predicted protein [Escherichia coli B354] gi|298280253|gb|EFI21757.1| preprotein translocase SecF subunit [Escherichia coli FVEC1302] gi|300298602|gb|EFJ54987.1| protein-export membrane protein SecF [Escherichia coli MS 185-1] gi|300304223|gb|EFJ58743.1| protein-export membrane protein SecF [Escherichia coli MS 200-1] gi|300315346|gb|EFJ65130.1| protein-export membrane protein SecF [Escherichia coli MS 175-1] gi|300355956|gb|EFJ71826.1| protein-export membrane protein SecF [Escherichia coli MS 198-1] gi|300396028|gb|EFJ79566.1| protein-export membrane protein SecF [Escherichia coli MS 69-1] gi|300404622|gb|EFJ88160.1| protein-export membrane protein SecF [Escherichia coli MS 84-1] gi|300407591|gb|EFJ91129.1| protein-export membrane protein SecF [Escherichia coli MS 45-1] gi|300414597|gb|EFJ97907.1| protein-export membrane protein SecF [Escherichia coli MS 115-1] gi|300419581|gb|EFK02892.1| protein-export membrane protein SecF [Escherichia coli MS 182-1] gi|300452493|gb|EFK16113.1| protein-export membrane protein SecF [Escherichia coli MS 116-1] gi|300458502|gb|EFK21995.1| protein-export membrane protein SecF [Escherichia coli MS 21-1] gi|300461869|gb|EFK25362.1| protein-export membrane protein SecF [Escherichia coli MS 187-1] gi|300527138|gb|EFK48207.1| protein-export membrane protein SecF [Escherichia coli MS 119-7] gi|300529159|gb|EFK50221.1| protein-export membrane protein SecF [Escherichia coli MS 107-1] gi|300843053|gb|EFK70813.1| protein-export membrane protein SecF [Escherichia coli MS 124-1] gi|300843392|gb|EFK71152.1| protein-export membrane protein SecF [Escherichia coli MS 78-1] gi|301074525|gb|EFK89331.1| protein-export membrane protein SecF [Escherichia coli MS 146-1] gi|308121520|gb|EFO58782.1| protein-export membrane protein SecF [Escherichia coli MS 145-7] gi|315256233|gb|EFU36201.1| protein-export membrane protein SecF [Escherichia coli MS 85-1] gi|315289876|gb|EFU49266.1| protein-export membrane protein SecF [Escherichia coli MS 110-3] gi|315294212|gb|EFU53563.1| protein-export membrane protein SecF [Escherichia coli MS 153-1] gi|324010086|gb|EGB79305.1| protein-export membrane protein SecF [Escherichia coli MS 57-2] gi|324010669|gb|EGB79888.1| protein-export membrane protein SecF [Escherichia coli MS 60-1] gi|324016685|gb|EGB85904.1| protein-export membrane protein SecF [Escherichia coli MS 117-3] gi|331037723|gb|EGI09943.1| protein-export membrane protein SecF [Escherichia coli H736] gi|331045744|gb|EGI17870.1| protein-export membrane protein SecF [Escherichia coli M605] gi|331051083|gb|EGI23135.1| protein-export membrane protein SecF [Escherichia coli M718] gi|331076134|gb|EGI47416.1| protein-export membrane protein SecF [Escherichia coli H591] gi|332103907|gb|EGJ07253.1| Protein-export membrane protein secF [Shigella sp. D9] Length = 338 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L I +I ++ G N+G+DF GG + + + Sbjct: 20 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 79 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q +++K Sbjct: 80 PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 139 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + +++L+Y+ RF+W A G + L D+ T Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 199 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 259 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318 Query: 828 A 828 Sbjct: 319 E 319 >gi|295100807|emb|CBK98352.1| protein-export membrane protein SecF [Faecalibacterium prausnitzii L2-6] Length = 777 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 153/763 (20%), Positives = 284/763 (37%), Gaps = 60/763 (7%) Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 V + V K + +++ ++ +E + +I R+ + Sbjct: 28 VAVKYGDVTKTYIKGAKDIRFGVDIKGGVNVTFVPSDGYDATDDQLEAAQLVIENRLVAL 87 Query: 175 GISESTIQRLGSHRILIQLPGEQ------DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228 +++ + + LI Q DP + +GTTA ++F + + + Sbjct: 88 NVTDYELYVDNNSDSLILEFPWQSGETEFDPEAAIEEIGTTAYLTFREGSSADGELVLDG 147 Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + + K + + A T Sbjct: 148 SMVESAAAQYGPVNGSSSE--------------YYVALKFTDEGAKAFGDATTRLYQTGG 193 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 I L I + S FT E +A + +GSLP L + Sbjct: 194 TISIWLDDENVSTASVNAAITDGSAIITSSASSPFTQEDVVKMARQINSGSLPFALTVDS 253 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 + LG +S+ A V LI++ M LY G +A ++ V TLA +S Sbjct: 254 YSTISPSLGENSLSAMVLAGVIAFALIMVLMTALYRLPGFLACIALAGQVAATLAFVSGY 313 Query: 409 G-----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463 TLTLP IAGI+L IG+ VD+N++ ERI+EE R +S+ +L GF+R + I Sbjct: 314 FPVFESFTLTLPGIAGIILAIGMGVDANVITAERIKEELRSGKSLDGALKSGFARGLTPI 373 Query: 464 FDSNITALIATVVLFFFGGGAV----------------------RGFAITMGLSILISMF 501 D N+T +I +VL G + F T+ +L++ Sbjct: 374 IDGNVTIVIVAIVLMGAFGPSDGFFAKALHFVFFAFGPSTAGTIYAFGYTLLTGVLLNFV 433 Query: 502 TAISIVRAMMIFIIRYKKMKSID-INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560 I R M+ K ++ + + + F+ R + S Sbjct: 434 FGIFATRIMIRGAASIKALRDPRLYGADAPGKTPAEKKQVNFVGLRKRFLTFSACLMAAI 493 Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFL 618 + G++ +F GG + + ++SVV+ + Sbjct: 494 VLCAVVLGVHLDTEFTGGAMITLSYENSFEMSVVQKAASEALGSNGLTLQTGENVATGEQ 553 Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITE--IVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 PG T ++ + + E + V + + ++K +V V+ + Sbjct: 554 TLKISMPGTETVTTDEVQTLLDSLNESCPDNSFAQLSLSNVSAAMGTKFLQKSLVAVVFA 613 Query: 677 AIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 + +L YI RFK + A+ L+ D+ G F L + +AA+LT++GY Sbjct: 614 LVLILAYIAYRFKKIGGLTGGMMAVLALLNDLMVVFGTFVLLRAPLDGNFIAAMLTILGY 673 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---- 788 S+ND VVVYDR+R+N L F++L++ SIN++ R++ T++ +++ M + Sbjct: 674 SINDTVVVYDRIRENRGLLGKKAGFQELVNHSINQSARRTIITTVTTVMALAVMCIVSKL 733 Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +G I +FA P+ G++ +S+ ++ + + + Sbjct: 734 YGLDSIFTFAFPLMMGMLSGVYTSLCVSTSAWVAWSERKNAKK 776 >gi|292492395|ref|YP_003527834.1| protein-export membrane protein SecD [Nitrosococcus halophilus Nc4] gi|291580990|gb|ADE15447.1| protein-export membrane protein SecD [Nitrosococcus halophilus Nc4] Length = 618 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 177/522 (33%), Positives = 287/522 (54%), Gaps = 36/522 (6%) Query: 32 LDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 PS + ++LGLDLRGG H ++EVD + V + Y ++LRS L++ + Sbjct: 105 APATPSWLRTIGGLPMNLGLDLRGGVHFLMEVDMEAAVQQAEERYVEDLRSLLRENRLRY 164 Query: 89 FSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147 S+ R + + F ++ ++ + D + + I L Sbjct: 165 LSIGRLGAGGVEIKFRNTEQRDQAETLIHDEY--------FDLLLQPVEEGGSPRLEITL 216 Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 S+ ++ A++Q++ +R RI+++G++E TIQ+ G +RI++QLPG QD +R +++LG Sbjct: 217 SEEEKREIQRLALQQNITTLRNRINELGVAEPTIQQQGRNRIVVQLPGVQDTARAKEILG 276 Query: 208 TTAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 TA + F V + G R + G L++ +V ++G H+ A + D Sbjct: 277 ATATLEFRLVDVTHEVQRAVEGRVPAGSRLYYERGGAPILLKKRVILTGDHIIDAASGID 336 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVL 303 ++ P V ++ D GAR F +VT +NIGKP+ + + Sbjct: 337 QQSGSPAVFVTLDGQGARLFSKVTGENIGKPMAVVFIETKTETRMEEGESVKLHRRVPEV 396 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 + S + QI+G + E A LA +LRAG+L ++I+EER +G LG D+I K Sbjct: 397 INVATIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIIEERTIGPSLGQDNIEK 456 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G +++ G L+++FM + Y +GL+AD ++ +N++L ++LLSLL ATLTLP IAGIVL Sbjct: 457 GFQSVLIGFALVLVFMALYYRVFGLIADLALTVNLVLLVSLLSLLQATLTLPGIAGIVLT 516 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ +RIREE R S S++ G++ A STI D+NIT LIA +VLF FG G Sbjct: 517 VGMAVDANVLIFQRIREELRNGNSPQASIEAGYANALSTIADANITTLIAAIVLFGFGTG 576 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 ++GFA+T+ L IL SMFTAI RA++ I ++ + I Sbjct: 577 PIKGFAVTLSLGILTSMFTAIIGTRAVINLIYGGRRKVRLAI 618 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 98/253 (38%), Gaps = 4/253 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 G V + + L N ++ L + G + Sbjct: 365 GKPMAVVFIETKTETRMEEGESVKLHRRVPEVINVATIRDQLSKRFQITGLDSTEEARNL 424 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + I +GP + ++ I KG V+I +L+++ + ++ F L A Sbjct: 425 ALLLRAGALAAPIDIIEERTIGPSLGQDNIEKGFQSVLIGFALVLVFMALYYRV-FGLIA 483 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 L +++ + +L L +A ++ +G +V+ V+++ R+R+ ++ S Sbjct: 484 DLALTVNLVLLVSLLSLLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREELR---NGNS 540 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 + I+ L ++ I+ + + +G I FA+ ++ GI+ + ++I Sbjct: 541 PQASIEAGYANALSTIADANITTLIAAIVLFGFGTGPIKGFAVTLSLGILTSMFTAIIGT 600 Query: 817 APILLFIYDWRAK 829 ++ IY R K Sbjct: 601 RAVINLIYGGRRK 613 >gi|148979592|ref|ZP_01815597.1| protein export protein SecF [Vibrionales bacterium SWAT-3] gi|145961677|gb|EDK26974.1| protein export protein SecF [Vibrionales bacterium SWAT-3] Length = 315 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 165/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR +SIL +I L T LN+G+DF GG + V +P Sbjct: 1 MFQILKADKMIDFMRWSKVAFVLSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 L +RS LE+ GD + QNF ++ +VRL+ + G +T +++ Sbjct: 61 HLPDIRSALEAEGFGDATVQNFGSARDVMVRLRPRDG-VAGETLGNQILSAIEKGTGEQV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L IE +LT VAA+LT++GYS+ND +VV+DR+R+N + + ++++ SI +TL Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-EVLNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + V GG++I FA + GI V SSI++A+ + + + R Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITRE 297 >gi|109897555|ref|YP_660810.1| preprotein translocase subunit SecD [Pseudoalteromonas atlantica T6c] gi|109699836|gb|ABG39756.1| protein-export membrane protein SecD [Pseudoalteromonas atlantica T6c] Length = 614 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 159/529 (30%), Positives = 281/529 (53%), Gaps = 36/529 (6%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 N P + + A+ + LGLDLRGG H ++EVD + VN + + RS Sbjct: 99 YYVAMNLAPDTP--AWLEAIGGAPMKLGLDLRGGVHFLMEVDMNSAVNKSFEDMVSDFRS 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L++EGI ++RQ++ + + F D + + + + Sbjct: 157 ALREEGIRYRTVRQVEGGVEIFFRDQDTLDKAEFFLRNR-----------NRDLVFTEKN 205 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + +I + +S+ + + +A++Q++ IIR R++Q+G++E ++Q+ G RI +QLPG QD Sbjct: 206 DLKIVVSMSEQKLAETRDYAVKQNITIIRNRVNQLGVAEPSVQKQGVDRIAVQLPGIQDT 265 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254 +R +++L TA + F V ++ + G + D G L++ K+ ++G H+ Sbjct: 266 ARAKEILNATATLEFRSVDLDHDVRDAVAGRVPAGSELVLDQQGQPQLLKKKIILTGNHI 325 Query: 255 NGATANFDPKTHKPVVDISFDEMGARR-----------------FFEVTRDNIGKPLAVV 297 A ++ D V + G++ ++ T + + Sbjct: 326 IDANSSADEYGIPQVNISLDSKGGSKMSQFTKDSIGKPMATVFIEYKSTGERDANDKLIF 385 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 R + + QA +I+G + + A L+ +LRAG+L + IVEER VG LG Sbjct: 386 EAKREVISIATIQARLGSSFRITGLDSPQEAHNLSLLLRAGALIAPIQIVEERTVGPSLG 445 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPS 416 ++I GT AI+ G V +++FM++ Y +GLVA+ ++ LN+++ + ++S++ ATL+LP Sbjct: 446 KENIALGTQAIIWGFVAVLIFMLIYYKAFGLVANLALTLNLVMIVGIMSMIPGATLSLPG 505 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +AGIVL +G+AVD+N+L+ ERIREE R+ +S ++ G+ A+STI D+NIT IA ++ Sbjct: 506 MAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIHHGYDSAFSTILDANITTFIAGLI 565 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF G G ++GF+IT+ + I SMFTAI + RA++ K +K + I Sbjct: 566 LFAVGTGPIKGFSITLMIGIATSMFTAIFVTRAVVNAWCGGKPLKKLSI 614 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 82/175 (46%), Gaps = 5/175 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716 GP + +E I G +I +A+LI++ I +K F L A L L++ +G ++ G Sbjct: 441 GPSLGKENIALGTQAIIWGFVAVLIFMLIYYK-AFGLVANLALTLNLVMIVGIMSMIPGA 499 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 +L +A ++ +G +V+ V++++R+R+ ++ S + I + + + Sbjct: 500 TLSLPGMAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIHHGYDSAFSTILDAN 556 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + FI+ L + G I F+I + GI + ++IF+ ++ + Sbjct: 557 ITTFIAGLILFAVGTGPIKGFSITLMIGIATSMFTAIFVTRAVVNAWCGGKPLKK 611 >gi|261341003|ref|ZP_05968861.1| protein-export membrane protein SecF [Enterobacter cancerogenus ATCC 35316] gi|288316867|gb|EFC55805.1| protein-export membrane protein SecF [Enterobacter cancerogenus ATCC 35316] Length = 323 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 165/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS I SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVWDFMRWDYWAFGISGFLLILSIAIMGVKGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 PVD+ +R +L+ + QNF ++ +VR+ + +Q ++V Sbjct: 65 PVDMDQMRESLQKAGFEEPLLQNFGSSRDIMVRMPPVHDANGSQELGSKVVHVINETTSQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++++ I++LIY+ RF+W A G + L D+ T Sbjct: 125 NATVKRIEFVGPSVGADLAQTGAMALMVALISILIYVGFRFEWRLAAGVVIALAHDVVIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 MGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|34496800|ref|NP_901015.1| preprotein translocase subunit SecD [Chromobacterium violaceum ATCC 12472] gi|34102655|gb|AAQ59020.1| protein-export membrane protein secD [Chromobacterium violaceum ATCC 12472] Length = 615 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 176/522 (33%), Positives = 281/522 (53%), Gaps = 33/522 (6%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL A P++L N + LGLDLRGG H +LEVD + ++ Y Sbjct: 100 IIALNLLPASPSWLASLHA---------NPMFLGLDLRGGVHFLLEVDMKAATDKAMERY 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + +LR LK + + S+++ N + + D ++ D V L Sbjct: 151 AGDLRRELKNKQVRYGSIKRNGNTLEVQLRDEDTLKSAQDVV-------YRMLPSLA--- 200 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + ++ + L I ++ + A++Q++ + R++++G +E IQ+ G +RI++QL Sbjct: 201 VRSDDASNKLLLTLKPEEITKIQNDAVKQNITTLHNRVNELGTTEPIIQQNGPNRIVVQL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNN---------SKKGFMFGVRFLRDSDGNQYLVE 244 PG QD +R + ++G TA + H V + + + ++ L++ Sbjct: 261 PGIQDTARAKDIIGRTATLEVHMVEDDQGKVAEALAGNVPAGYELLDEATSRGQSKILLK 320 Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL----DG 300 VE++G ++N A +FD P V I+ D GA F ++T +N+GK +A+VL Sbjct: 321 SDVELTGDNINDAQPSFDQFG-APAVSINLDSTGAAIFRQLTAENVGKRMAMVLVEKGRK 379 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 V+TAPVI I G+ +ISG+ A A +LRAGSL +NI+EER +G LG ++ Sbjct: 380 EVVTAPVIRTEIGGGRVEISGSMNSAEANDTALLLRAGSLAAPMNIIEERTIGPSLGKEN 439 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I KG A + G I +FM++ YG +G+ + S+ +NV L +ALLS+L ATLTLP IA I Sbjct: 440 IEKGFHATLWGFAAIAVFMVIYYGLFGVFSSLSLAINVFLLIALLSMLQATLTLPGIAAI 499 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L +G+A+D+N+L+NERIREE R ++ G+ A+ TI DSN+T LIA + L F Sbjct: 500 ALALGMAIDANVLINERIREELRNGMPPHSAIHAGYDHAWHTILDSNVTTLIAGLALMIF 559 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G G VRGFAI L IL SMF+A+ + R ++ ++ + Sbjct: 560 GSGPVRGFAIVHCLGILTSMFSAVLVSRGLVHLWYGRRRKLT 601 Score = 154 bits (388), Expect = 6e-35, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 86/208 (41%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + + I +GP + +E I KG + A+ Sbjct: 396 VEISGSMNSAEANDTALLLRAGSLAAPMNIIEERTIGPSLGKENIEKGFHATLWGFAAIA 455 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ I + F + + +L +++ + ++ L +AA+ +G +++ V++ Sbjct: 456 VFMVIYYGL-FGVFSSLSLAINVFLLIALLSMLQATLTLPGIAAIALALGMAIDANVLIN 514 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + I + + +++ I+ L + ++G + FAI Sbjct: 515 ERIREELR---NGMPPHSAIHAGYDHAWHTILDSNVTTLIAGLALMIFGSGPVRGFAIVH 571 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + S++ ++ ++ Y R K Sbjct: 572 CLGILTSMFSAVLVSRGLVHLWYGRRRK 599 Score = 37.7 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 14/33 (42%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34 R W ++ + I + LPNF ++ + Sbjct: 3 RYPLWKYLVIVVALIISAIYTLPNFYGETPAVQ 35 >gi|269103291|ref|ZP_06155988.1| protein-export membrane protein SecF [Photobacterium damselae subsp. damselae CIP 102761] gi|268163189|gb|EEZ41685.1| protein-export membrane protein SecF [Photobacterium damselae subsp. damselae CIP 102761] Length = 289 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 153/273 (56%), Gaps = 2/273 (0%) Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 SI + T GLN+G+DF GG + V P +L +R LE GD QNF + Sbjct: 1 MVSLSIATVATKGLNWGLDFTGGTLIEVSFENPANLGQIREALEKADFGDAVVQNFGTAR 60 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675 + +VRLQ + G + +++ ++ E VGP + EL G + ++I Sbjct: 61 DVMVRLQPRDG-VKGEVLGGQIISALKEGTGQNVEMRRIEFVGPNVGDELAEAGGLAILI 119 Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 S + +L+Y+ +RF+W A GA+ +L D+ T+G F+ +E +LT VAA+LT++GYS+N Sbjct: 120 SLLCILMYVSLRFEWRLAAGAVMSLAHDVIITVGIFSFLQVEVDLTIVAALLTVVGYSLN 179 Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 D +VV+DR+R+N + + D+I+ SI++TL R++ TS V+ + + GG++I Sbjct: 180 DTIVVFDRIRENFRKMRKG-NASDIINSSISQTLSRTLITSGTTLFVVIALFLKGGTMIH 238 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 FA+ + GI V SSI++A+ + L + R Sbjct: 239 GFAMALLIGITVGTYSSIYVASALALKLGITRE 271 >gi|330993542|ref|ZP_08317477.1| Protein-export membrane protein secF [Gluconacetobacter sp. SXCC-1] gi|329759572|gb|EGG76081.1| Protein-export membrane protein secF [Gluconacetobacter sp. SXCC-1] Length = 317 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 124/309 (40%), Positives = 183/309 (59%), Gaps = 4/309 (1%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + +P I FMR RF G+ S + SI S+ L F GL G+DF+GGI + Sbjct: 2 MFDRPLLRFVPRGTKINFMRGRFIGLATSAVLSIASLILFFHPGLTLGLDFRGGIVVEAR 61 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT- 643 P D + +R+ L + + Q+F G + L+RL P + + + Sbjct: 62 TQGPADFNAIRAALNAQHVNAAGVQSFGGPDDVLIRLDTPPDSEPDHEARTQAMVDSVRH 121 Query: 644 --EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 +P + + + VG +SREL R G++ + IS + +L YIW RF+W FA+ A+ TL+ Sbjct: 122 AIATLPGAQVLRADAVGASVSRELFRNGMLALGISLLMILAYIWFRFEWEFAVSAVVTLV 181 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 LD+TK +GF + EF+L VAA+LT++GYS NDKVVVYDR+R+N++ Y T + +LI Sbjct: 182 LDLTKAIGFLVITHFEFDLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRT-MPLAELI 240 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 D SINETL R++ TS F++ LP+A++GG+ + FA M FGIVV SSSIFIAAP+LL Sbjct: 241 DLSINETLSRTLGTSCTVFLAALPLALFGGASLSGFAWVMLFGIVVGTSSSIFIAAPLLL 300 Query: 822 FIYDWRAKN 830 + + R + Sbjct: 301 LMGEKRLRR 309 >gi|270263544|ref|ZP_06191813.1| hypothetical protein SOD_e01680 [Serratia odorifera 4Rx13] gi|270042428|gb|EFA15523.1| hypothetical protein SOD_e01680 [Serratia odorifera 4Rx13] Length = 322 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 166/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + GIS+L + SI + G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYVAFGISLLLLVASIATMSVRGFNWGLDFTGGTVIEISLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P +L ++R LE D QNF ++ +VR+ G Q +++ + Sbjct: 65 PANLDLMRDTLEKAGFQDPIIQNFGSSRDVMVRMPPATGT-AGQELGNKVIGVINGAVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + EL + G + ++++ I +LIY+ RF+W ALGA+ L D+ T Sbjct: 124 NATVKRIEFVGPSVGSELAQTGGMALLVALICILIYVGFRFEWRLALGAVIALAHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTLMTSGTTLMVVLMLYIFGGAMLQGFSLAMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|222112518|ref|YP_002554782.1| preprotein translocase subunit SecD [Acidovorax ebreus TPSY] gi|221731962|gb|ACM34782.1| protein-export membrane protein SecD [Acidovorax ebreus TPSY] Length = 632 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 168/530 (31%), Positives = 275/530 (51%), Gaps = 22/530 (4%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ R P + + LGLDLRGG H +L+VD + ++ Y+ +LRS L+++ I Sbjct: 109 NLVSRSPDWLTALHARPMYLGLDLRGGVHFMLQVDMQAAITKKIESYAGDLRSALREKNI 168 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + + + D + + D + Sbjct: 169 RHGGIGREGQAVDIRVRDEATLTAARNLIADQF--------PDLAVVSSADGDGMRLRAT 220 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + + +V A++Q+M + RI+++G++E IQ+ G RI++QLPG QD ++ + +L Sbjct: 221 IKPEALRKVQEQALKQNMVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDIL 280 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGIHLNGATA 259 G TA + V + G + D +G +V+ +V ++G +L A Sbjct: 281 GRTATLEVRMVDEGTEARAAEMGTGPVPFGAEKYLDRNGQAVIVKKQVVLTGENLTDAQP 340 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSG 315 FD +T +P V+++ D G+R F ++TR+N+GK + G V+TAPVI I G Sbjct: 341 GFDGQTQEPTVNLTLDAKGSRIFKDITRENVGKRMAIVLFEKGKGEVVTAPVIRSEIGGG 400 Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375 + QISG T A A +LRAGSL + I+EE +G LG+D+I +G ++V G+V I Sbjct: 401 RVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIDRGIQSVVWGMVAI 460 Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435 FM V Y +G+ + ++ +NV+L +A+LS+L ATLTLP IA + L +G+A+DSN+L+N Sbjct: 461 AAFMCVYYMLFGVFSTIALGVNVLLLIAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495 ERIREE R + ++ G+ RA++TI DSN+T LIA + L FG G VRGFA+ + Sbjct: 521 ERIREELRAGVAPQAAIATGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVHCIG 580 Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545 IL SMF+A+ R ++ KK + ++ Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGRKKKLKSVSIGQVWKPEGDEHRSVAARGN 630 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 86/212 (40%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I +GI V+ +A+ Sbjct: 402 VQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIDRGIQSVVWGMVAIA 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + + F + + L +++ + ++ L +AA+ +G +++ V++ Sbjct: 462 AFMCVYY-MLFGVFSTIALGVNVLLLIAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ ++ + I + +++ I+ L + +G + FA+ Sbjct: 521 ERIREELRA---GVAPQAAIATGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++F + ++ Y + K + Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGRKKKLKSV 609 Score = 46.6 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + ++ IG L LPNF ++ ++V Sbjct: 3 RYPVWKYAILVIVLLIGALYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + LK + S+ N + F + D + L Sbjct: 38 SAKATLKVDAAVQQRVEDALKAANVASDSIVFDGNSVRARFDTPDNQLKAKDAIEKAL 95 >gi|145632483|ref|ZP_01788217.1| preprotein translocase subunit SecF [Haemophilus influenzae 3655] gi|145635145|ref|ZP_01790850.1| preprotein translocase subunit SecF [Haemophilus influenzae PittAA] gi|229844942|ref|ZP_04465079.1| preprotein translocase subunit SecF [Haemophilus influenzae 6P18H1] gi|144986678|gb|EDJ93230.1| preprotein translocase subunit SecF [Haemophilus influenzae 3655] gi|145267566|gb|EDK07565.1| preprotein translocase subunit SecF [Haemophilus influenzae PittAA] gi|229812076|gb|EEP47768.1| preprotein translocase subunit SecF [Haemophilus influenzae 6P18H1] Length = 324 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 92/309 (29%), Positives = 155/309 (50%), Gaps = 5/309 (1%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 + +FM+ R WG +S L + S+ + T G N+G+DF GG+ Sbjct: 6 KDKDGHFIREINGIKLPFPLTEFMKVRKWGYILSALLMVISLFFIITKGFNWGLDFTGGV 65 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 ++ +L +RS L I Q ++ ++RL DS + E VK Sbjct: 66 VFDTHFSQSANLEQIRSKLHENGIESPVVQTTGSVQDVMIRLPASNNDST----IGEHVK 121 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + + I++ E VGP + EL + + + + +LIY+ RF+W G+I + Sbjct: 122 SMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSIAS 181 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L D+ TLG F+ IE +LT VAA+L+++GYS+ND +VV+DR+R+N + + D Sbjct: 182 LAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-RRLDTID 240 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +ID S+ +TL R++ TS+ + V+ + +GG I +F++ + GI SSIF+A I Sbjct: 241 IIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIAI 300 Query: 820 LLFIYDWRA 828 + R Sbjct: 301 AYDVGLRRE 309 >gi|325203700|gb|ADY99153.1| protein-export membrane protein SecD [Neisseria meningitidis M01-240355] Length = 617 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I ++ Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLM 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.8 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|218708624|ref|YP_002416245.1| preprotein translocase subunit SecF [Vibrio splendidus LGP32] gi|218321643|emb|CAV17595.1| Preprotein translocase subunit SecF [Vibrio splendidus LGP32] Length = 315 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 163/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SIL +I L T LN+G+DF GG + V P Sbjct: 1 MFQILKADKMIDFMRWSKVAFLFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEEPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +RS LE+ GD + QNF + +VRL+ + G +T +++ Sbjct: 61 NLPDIRSALEAEGFGDATVQNFGSAREVMVRLRPRDG-VAGETLGNQILSAIKDGTGEQV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L IE +LT VAA+LT++GYS+ND +VV+DR+R+N + + ++++ SI +TL Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-EVLNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + V GG++I FA + GI V SSI++A+ + + + R Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITRE 297 >gi|123443370|ref|YP_001007344.1| preprotein translocase subunit SecF [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090331|emb|CAL13197.1| protein-export membrane protein SecF [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 322 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 167/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + G+S+L + SI ++ T G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEISLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R LE+ QNF ++ +VR+ G Q +++ + Sbjct: 65 PADLDQLRDTLEAAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + +I++ + +L+Y+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALIVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|255022135|ref|ZP_05294138.1| protein-export membrane protein SecD [Acidithiobacillus caldus ATCC 51756] gi|254968399|gb|EET25958.1| protein-export membrane protein SecD [Acidithiobacillus caldus ATCC 51756] Length = 594 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 193/505 (38%), Positives = 310/505 (61%), Gaps = 20/505 (3%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 S P + ++LGLDLRGG +L+L+VD D + L+ + LRSFL+++ + Sbjct: 101 SQKPAEPDWLAALGAQPVNLGLDLRGGVYLLLKVDTDAVIKHALEEDRNRLRSFLRRKDL 160 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++ + + +++ A E +A + + L + P+ ++ + Sbjct: 161 QYLNVEQTGPDTLSVQMA----SEQLAREAQAAIAREFPDLALAPEGQGILQAS------ 210 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 L+ ++ A++Q++ +IR RID++G++E IQR G I +QLPG QD R +++ Sbjct: 211 -LTPAAAQKMQDDALQQAIVVIRNRIDELGVAEPQIQRQGKEHIAVQLPGVQDTQRAKEI 269 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260 +G+TA++ F V + G D+ DG Y++ + ++G +LNGA+A Sbjct: 270 IGSTAQLEFKMVAERVDMAAALKGQIPPGDALYYGVDGTPYVLHKETVLTGRYLNGASAG 329 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320 D T + +V+ISFD +G R F ++T ++G+ +A++LD +V+TAPVI +AI G+AQI Sbjct: 330 IDNNTGQAIVNISFDSVGTRIFGDLTSKHVGQRMAILLDNKVVTAPVIREAITGGRAQID 389 Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380 G +++ A +A LRAG+LP +++ EER VG LG DSI+ G A++ G++ +VLFM Sbjct: 390 GFSSLKDASNVAIELRAGALPAPVHVSEERTVGPTLGQDSIHDGVMAVIFGMLFVVLFMT 449 Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440 Y +GL+AD +I +NV+ LA+LSL+G TLTLP IAGIVL IGLAVD+N+LV ERIRE Sbjct: 450 FYYRAFGLIADLAILVNVLFILAVLSLMGGTLTLPGIAGIVLKIGLAVDANVLVFERIRE 509 Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500 E R+ S S+D GF RA++TI DSNIT LIA + LF FG GA++GFA+ + + +L+SM Sbjct: 510 ELRRGMSPRASIDAGFKRAFATIVDSNITVLIAALTLFQFGTGAIKGFALVLTIGVLVSM 569 Query: 501 FTAISIVRAMMIFIIRYKKMKSIDI 525 FTA + R ++ F + ++++ + I Sbjct: 570 FTATLMSRGIVEFALGRRRVQKLWI 594 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 94/204 (46%), Gaps = 4/204 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G S + ++ + + + VGP + ++ I G++ VI + +++++ Sbjct: 389 DGFSSLKDASNVAIELRAGALPAPVHVSEERTVGPTLGQDSIHDGVMAVIFGMLFVVLFM 448 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 ++ F L A +++++ L +L G L +A ++ IG +V+ V+V++R+ Sbjct: 449 TFYYR-AFGLIADLAILVNVLFILAVLSLMGGTLTLPGIAGIVLKIGLAVDANVLVFERI 507 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ +S R ID V +++ I+ L + +G I FA+ + G Sbjct: 508 REELR---RGMSPRASIDAGFKRAFATIVDSNITVLIAALTLFQFGTGAIKGFALVLTIG 564 Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828 ++V+ ++ ++ I+ F R Sbjct: 565 VLVSMFTATLMSRGIVEFALGRRR 588 >gi|163802458|ref|ZP_02196351.1| protein export protein SecF [Vibrio sp. AND4] gi|159173759|gb|EDP58574.1| protein export protein SecF [Vibrio sp. AND4] Length = 315 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 160/299 (53%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SI SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAEKTIGFMRWSKVAFAFSIFMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ L+S GD + QNF + +VRL+ + D +T +++ Sbjct: 61 NLENIRAALDSKGFGDATVQNFGSAREVMVRLRPRD-DMSGETLGNQIIGAIKEGTGESV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + ++ S I +L+Y+ +RF+W A GA+ L DI TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILASLICILLYVSMRFEWRLAAGAVLALAHDIIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + D++D SI +TL Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + + GG++I FA + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297 >gi|330814105|ref|YP_004358344.1| protein-export membrane protein SecD [Candidatus Pelagibacter sp. IMCC9063] gi|327487200|gb|AEA81605.1| protein-export membrane protein SecD [Candidatus Pelagibacter sp. IMCC9063] Length = 517 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 193/515 (37%), Positives = 312/515 (60%), Gaps = 9/515 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + V + IG+ LPN + + R++LGLDL+GGS+L+LE+D + Sbjct: 5 SRLKVFSIISVIFIGIYFFLPNLSFFNNS----KFFSEKRVNLGLDLQGGSYLLLEIDSN 60 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 + LQ S E+R L+K I + +N + +F D + KE + + VN Sbjct: 61 PLIEQRLQTKSLEVRRELRKNNIQYKNFSFSKNSLVFTF-DEKQKETLDKILNER--SVN 117 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 S + K+ ++ I ++ ++ NI+ + +A++QS+EI+R RID++G E I Sbjct: 118 SNIKTGGKEFEII-YENNIIKLIFTKENINLIKKNALDQSIEIVRNRIDELGTKEPNIVT 176 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243 G RIL++LPG +DPS +++LLG TAK++ V ++ + + S +QY V Sbjct: 177 RGLDRILVELPGLKDPSAIKKLLGKTAKLTLRFVANSSDENSLGVETLSSKSSG-SQYSV 235 Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303 E ++ ISG +L A FD + VV+ D +G+R+F +++N+G+ LA+VLD V+ Sbjct: 236 EKRIIISGENLIDAQPGFDQLNNSSVVNFKLDNIGSRKFALASKENVGRYLAIVLDKDVV 295 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 ++PVI +AI +G QISGNFT + A LA +LRAG+LP LNI+EER+VG DLG +SI K Sbjct: 296 SSPVIREAIVTGSGQISGNFTTQEANELAILLRAGALPAPLNIIEERSVGPDLGKESIEK 355 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G +++ G +L++++MI Y +G+ ++ S+ N++L +LS+ GATLTLP IAGI+L Sbjct: 356 GILSLIIGFLLVMIYMIYNYRIFGVFSNVSLLTNLVLISGVLSIFGATLTLPGIAGIILT 415 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVDSN+L+ ER++EE +K ++ + D + + +TI DSN+T LIA VL++ G G Sbjct: 416 VGMAVDSNVLIYERVKEELKKEKNYLIAFDTAYKKVLTTILDSNVTTLIAAFVLYYMGSG 475 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 V+GFAIT+G+ IL + FT + R ++ I+ Sbjct: 476 PVKGFAITLGIGILSTFFTTYVLGRLLVAKYIKNN 510 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 87/174 (50%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + +E I KGI+ +II + ++IY+ ++ F + + +L+ ++ G ++FG Sbjct: 343 SVGPDLGKESIEKGILSLIIGFLLVMIYMIYNYRI-FGVFSNVSLLTNLVLISGVLSIFG 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ +K ++ D + + L + + Sbjct: 402 ATLTLPGIAGIILTVGMAVDSNVLIYERVKEELK---KEKNYLIAFDTAYKKVLTTILDS 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 ++ I+ + G + FAI + GI+ + + ++ +L+ Y K Sbjct: 459 NVTTLIAAFVLYYMGSGPVKGFAITLGIGIL-STFFTTYVLGRLLVAKYIKNNK 511 >gi|161504406|ref|YP_001571518.1| preprotein translocase subunit SecF [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865753|gb|ABX22376.1| hypothetical protein SARI_02517 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 338 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR FW GIS L I +I ++ G N+G+DF GG + + + Sbjct: 20 YTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 79 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q ++V Sbjct: 80 PAEMDVMREALQKAGFEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQ 139 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++++ I++L+Y+ RF+W A G + L D+ T Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIIT 199 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 259 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318 Query: 828 A 828 Sbjct: 319 E 319 >gi|68248847|ref|YP_247959.1| preprotein translocase subunit SecF [Haemophilus influenzae 86-028NP] gi|68057046|gb|AAX87299.1| protein-export membrane protein SecF [Haemophilus influenzae 86-028NP] gi|301168891|emb|CBW28485.1| SecYEG protein translocase auxillary subunit [Haemophilus influenzae 10810] gi|309972616|gb|ADO95817.1| General secretory pathway component SecF [Haemophilus influenzae R2846] Length = 325 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 158/315 (50%), Gaps = 5/315 (1%) Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 +++ + +FM+ R WG +S L + S+ + T G N+G+ Sbjct: 1 MMKLFTKDKDGHFIREINGIKLPFPLTEFMKVRKWGYILSALLMVISLFFIITKGFNWGL 60 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 DF GG+ ++ +L +RS L I Q ++ ++RL DS Sbjct: 61 DFTGGVVFDTHFSQSANLEQIRSKLHENGIESPVVQTTGSVQDVMIRLPASNNDST---- 116 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693 + E VK + + I++ E VGP + EL + + + + +LIY+ RF+W Sbjct: 117 IGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLG 176 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 G+I +L D+ TLG F+ IE +LT VAA+L+++GYS+ND +VV+DR+R+N + Sbjct: 177 FGSIASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-R 235 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 + D+ID S+ +TL R++ TS+ + V+ + +GG I +F++ + GI SSI Sbjct: 236 RLDTIDIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSI 295 Query: 814 FIAAPILLFIYDWRA 828 F+A I + R Sbjct: 296 FVAIAIAYDVGLRRE 310 >gi|146310539|ref|YP_001175613.1| preprotein translocase subunit SecF [Enterobacter sp. 638] gi|145317415|gb|ABP59562.1| protein translocase subunit secF [Enterobacter sp. 638] Length = 323 Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 86/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS I SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVWDFMRWDYWAFGISGFLLIVSIAIIGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P D+ +R L+ + QNF ++ +VR+ + +Q ++V Sbjct: 65 PADMDQMREALQKAGFEEPQLQNFGSSRDIMVRMPPVHDANGSQELGSKVVNVINEATSQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++++ I++L+Y+ RF+W A G + +L D+ T Sbjct: 125 DATVKRIEFVGPSVGADLAQNGAMALLVALISILVYVGFRFEWRLAAGVVISLAHDVVIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 MGVLSLFHIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG ++ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLFLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|84387610|ref|ZP_00990627.1| protein export protein SecF [Vibrio splendidus 12B01] gi|84377455|gb|EAP94321.1| protein export protein SecF [Vibrio splendidus 12B01] Length = 315 Score = 222 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 163/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR SIL +I L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAEKMIDFMRWSKVAFLFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +RS LE+ GD + QNF + +VRL+ + G +T +++ Sbjct: 61 NLPDIRSALEAEGFGDATVQNFGSAREVMVRLRPRDG-VAGETLGNQILSAIKDGTGEQV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S I +LIY+ +RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L IE +LT VAA+LT++GYS+ND +VV+DR+R+N + + ++++ SI +TL Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-EVLNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GG++I FA + GI V SSI++A+ + + + R Sbjct: 239 SRTLITSGTTLFVVIALFAQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITRE 297 >gi|163784763|ref|ZP_02179564.1| protein-export membrane protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879967|gb|EDP73670.1| protein-export membrane protein [Hydrogenivirga sp. 128-5-R1-1] Length = 303 Score = 222 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 83/302 (27%), Positives = 150/302 (49%), Gaps = 2/302 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + I F++ + +G S + S+ L+F G N G+DF GG + V + Sbjct: 1 MRNFLSTPPNIDFLKIKKFGYITSGTLVLISLILIFIKGFNLGLDFTGGTSIQVKFEEKI 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 ++ +R + D+ Q E ++ + ++ K Sbjct: 61 NVGNIRKATSYVGFKDVQIQEVGKEGKEY-EIRIPIKYGSSTVIYKKVKKALDEFFKGKY 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I+ E +G + EL + I ++ IA+L+Y+ RF+ FA+ A+ L D TLG Sbjct: 120 KIRRVEYIGSVVGEELRKASIYSIVAVMIAILLYVGYRFEPVFAIAAVIPLFHDAILTLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L G E NL+ +AA+LT++GYS+ND ++++DR+R+N+K+ + L+++SINE L Sbjct: 180 MFSLTGYELNLSVIAAILTVLGYSLNDTIIIFDRIRENIKIRGKK-NLLQLVNQSINENL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ TS SVL + ++GG + F+ + GI+ SSI++A +++ I + K Sbjct: 239 ARTIITSGTTLFSVLALYLFGGESLKGFSFALLVGIIFGTYSSIYVAGALVVDIEKYIYK 298 Query: 830 NA 831 Sbjct: 299 KK 300 >gi|332977808|gb|EGK14565.1| preprotein translocase D and F [Desmospora sp. 8437] Length = 302 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 84/300 (28%), Positives = 147/300 (49%), Gaps = 6/300 (2%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + F+ R W S + I I L GLN G+DF G ++ + N+P DL + Sbjct: 1 MNFKLDFVGRRRWFFIFSGVVLILGILSLLFQGLNLGVDFVSGTRVDIKINKPYDLEEAK 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 +LE L +L+ Q D ++ E N + Sbjct: 61 GHLEKLGYKSPDASKAGENYEWLIFRTNQVLDHNDIGKIREE----FQASYGNQVDVNEQ 116 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 V P + REL + I+ ++I+ + +++Y+ +RF++ A+ A+ L+ D+ G F++F Sbjct: 117 KVDPIVGRELAKNAIISLLIAFLGIVLYVTLRFEYRMAVPAVLALLHDVLVVTGAFSIFQ 176 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSV 773 E L +AA+LT++G+S+ND +V++DR+R+NM L F ++ SI +TL RS+ Sbjct: 177 WEVGLVYIAAILTIVGFSINDTIVIFDRIRENMDLEKPKTWEDFGKTVNASIQQTLVRSI 236 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 TS+ + L + V GG I F++ + G++ SSIFIA+ I + + A++ Sbjct: 237 NTSLTVVFAALSLFVLGGESIRYFSLALLIGLIFGTYSSIFIASQIWVGWKWRSMEKAKL 296 >gi|220935233|ref|YP_002514132.1| preprotein translocase subunit SecF [Thioalkalivibrio sp. HL-EbGR7] gi|219996543|gb|ACL73145.1| preprotein translocase subunit SecF [Thioalkalivibrio sp. HL-EbGR7] Length = 313 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 104/296 (35%), Positives = 168/296 (56%), Gaps = 2/296 (0%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L I FM R + +S L I SI L+ T GLN+GIDF GG + V PV+L Sbjct: 1 MLNFANANINFMGQRRLWLAVSALLIIGSIVLIATRGLNFGIDFTGGTVIEVGYPEPVEL 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 VR L++ G Q F ++ L+RL + G++ A E+++ + Sbjct: 61 EQVREQLDAGGYGRAIVQYFGTSQDVLIRLAPREGENTADLS-NEVLRLLRAGADNGVDM 119 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + E VGP++ EL +G + ++ + +LIY+ +RF+W F++GA+ L D+ TLG F Sbjct: 120 RRVEFVGPQVGEELREQGGLAMLYALFGILIYVALRFEWRFSVGAVLALAHDVIITLGIF 179 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 AL EF+L+ +AAVL +IGYS+ND +VVYDR+R+N + + +++K++N+TL R Sbjct: 180 ALLQKEFDLSVLAAVLAVIGYSLNDTIVVYDRIRENFRKLRK-ENAEQVMNKAVNQTLSR 238 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ T + + +L + GG+VI FA+ + G++V SSI+IAA + L + R Sbjct: 239 TIMTGVTTLLVLLALFFLGGAVINGFALALIIGVLVGTYSSIYIAAALALVMGVDR 294 >gi|254512459|ref|ZP_05124526.1| protein-export membrane protein SecF [Rhodobacteraceae bacterium KLH11] gi|221536170|gb|EEE39158.1| protein-export membrane protein SecF [Rhodobacteraceae bacterium KLH11] Length = 322 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 175/305 (57%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P + F +GIS L + + GLN+GIDF+GG + + + Sbjct: 1 MRLKLVPQNTSFDFFSRWKIWLGISGLMMVIAFTSFLLQGLNFGIDFRGGTTIRTQSAQE 60 Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 +D+ R + L++GD + E ++R+Q Q G + V++ + Sbjct: 61 IDVGAYRDAIAPLELGDVTITEIFDPTFGEDENVAMIRIQAQDGAEAVAATTVTAVEEAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 T P + E VGPK+S ELI+ ++ V ++ A+L+YIW+RF+W FALGA+ L+ Sbjct: 121 TAAAPDIQFVSVESVGPKVSGELIQTAVIAVALAIGAVLVYIWLRFEWQFALGAVAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y +++++ Sbjct: 181 DVILTIGIFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKK-DLKEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINETL R+V TS+ ++++ + V GG VI F M +G++V SS+F+A+ ILL+ Sbjct: 240 ISINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIVGTYSSVFVASTILLW 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|269103292|ref|ZP_06155989.1| protein-export membrane protein SecD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163190|gb|EEZ41686.1| protein-export membrane protein SecD [Photobacterium damselae subsp. damselae CIP 102761] Length = 571 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 155/523 (29%), Positives = 284/523 (54%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + N + LGLDLRGG H ++EVD D + L D R+ L++ I Sbjct: 58 NLAPATPKWLEDIGANPMKLGLDLRGGVHFLMEVDMDAAMEKLLGQQEDTFRTELREAKI 117 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ + ++ + + D+ E + + L+ D + ++ Sbjct: 118 RYRAIDKTKDSVVVRLRDAEQVEQAKNALEK--------LHPDMVFVENDSKGRYLLTAT 169 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A++Q++ I+R R++++G++E +QR G++RI+++LPG QD +R +++L Sbjct: 170 FTEARLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQGANRIVVELPGVQDTARAKEIL 229 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V + G D +++ +V +SG H+ ++ Sbjct: 230 GATATLEFREVDSSADLGAAAAGRVPAGSEVKFTRDERPVVLKKRVILSGSHITD-ASSS 288 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + +R+N+GK +A V + Sbjct: 289 ADEYGRPQVNISLDGEGGSKMTAFSRNNVGKLMATVFTEYKDSGKRSPDGKVVLEKHEEV 348 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q +I+G T A L+ +LRAG+L ++IVEER +G +G +I Sbjct: 349 INQATIQTALGRNFRITGIDTQAEAHNLSLLLRAGALIAPISIVEERTIGPSMGQQNIDM 408 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V +++F +V Y +GL+A+ ++ +N++L + ++S++ AT+TLP IAGIVL Sbjct: 409 GVQACIWGMVAVMIFTLVYYKAFGLIANLALAMNLVLIIGIMSMIPGATMTLPGIAGIVL 468 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ +S ++ G++ A+STI D+NIT LI ++LF G Sbjct: 469 TVGMAVDANVLIFERIREELREGRSPQQAIQQGYANAFSTIADANITTLITAIILFAVGT 528 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI RA++ ++ K++ + I Sbjct: 529 GAIKGFAVTLSIGILTSMFTAIVCTRAVVNWLYGGKRIDKLSI 571 Score = 152 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 97/245 (39%), Gaps = 5/245 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + + N + L R G + + Sbjct: 325 FTEYKDSGKRSPDGKVVLEKHEEVINQATIQTALGRNFRITGIDTQAEAHNLSLLLRAGA 384 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I G+ I +A++I+ + +K F L A L +++ Sbjct: 385 LIAPISIVEERTIGPSMGQQNIDMGVQACIWGMVAVMIFTLVYYK-AFGLIANLALAMNL 443 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ S + I + Sbjct: 444 VLIIGIMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQ 500 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I ++ ++ Sbjct: 501 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVCTRAVVNWL 560 Query: 824 YDWRA 828 Y + Sbjct: 561 YGGKR 565 >gi|88812651|ref|ZP_01127898.1| SecF protein [Nitrococcus mobilis Nb-231] gi|88790067|gb|EAR21187.1| SecF protein [Nitrococcus mobilis Nb-231] Length = 309 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 95/298 (31%), Positives = 159/298 (53%), Gaps = 5/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I F+ R + +S + + ++ L GLN G+DF GG + V +P + Sbjct: 1 MDLFKRQTHINFIGMRRYATILSAILILIALVSLAVRGLNLGLDFTGGTIVEVTYPKPAE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L D Q+F ++ L+R+ + S + + Sbjct: 61 LQDVRAALAVAGYPDAVVQHFGSARDVLIRMPSRQTSSAQLGDQIITAL----SGSGEAR 116 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + E VGP++ +LI KG + ++ + + +LIY+ RF++ FA+ ++ LI D+ T+GF Sbjct: 117 LSRVEFVGPQVGEQLIEKGGLAMLYTLVGVLIYVAFRFEYRFAVSSVAALIHDVIITIGF 176 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+LF IEF+LT +AAVL +IGYS+ND +VV+DR+R+N S ++ ++SIN+TL Sbjct: 177 FSLFQIEFDLTVLAAVLAVIGYSLNDTIVVFDRIRENFVRMRKG-SPIEIANQSINQTLS 235 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS I V + + GG +I FA+ + GIV SS++IA+ L + + Sbjct: 236 RTLVTSGTTLIVVFTLYLIGGELIAGFALALLVGIVTGTYSSVYIASTTALALGVSKQ 293 >gi|317052522|ref|YP_004113638.1| protein-export membrane protein SecF [Desulfurispirillum indicum S5] gi|316947606|gb|ADU67082.1| protein-export membrane protein SecF [Desulfurispirillum indicum S5] Length = 314 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 97/294 (32%), Positives = 168/294 (57%), Gaps = 3/294 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FMR R + V +S + ++ + T GLN+GIDF GG + + +P + +R Sbjct: 4 RFYYIPFMRLRTYAVAVSAILVAIALISMGTRGLNFGIDFTGGALVQLEFQQPPVIEEIR 63 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT-EIVPLSTIQNT 654 S+L ++ +GD + Q+F ++ LVR +S A ++ ++++ ++ + + Sbjct: 64 SHLSAVGLGDSTIQHFGSDREILVRAPIISDESAAAMELISLIRETLSAQYGDQMDVLRI 123 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 E VGP++ EL +G ++ + +A++ YIW R++ F + A+ L+ D+ TLG F+L Sbjct: 124 ETVGPRVGGELREQGTYAILYALLAIVAYIWWRYELNFGVAAVIALVHDVVITLGIFSLA 183 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRS 772 G+ F+L +AA+LT+IGYS+ND +VV+DR+R+N+ S +I+ SI ETL R+ Sbjct: 184 GVTFSLPVLAAILTVIGYSLNDTIVVFDRIRENLYIPEGKEKPSIISIINTSITETLSRT 243 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS I V + +GG VI FA + GI+V SSIF+A+ +L++ Sbjct: 244 ILTSGTTLIVVAVLYFFGGEVINGFAFTLLVGIIVGTYSSIFVASLLLVYWRPR 297 >gi|293611110|ref|ZP_06693409.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826762|gb|EFF85128.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 633 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 158/535 (29%), Positives = 272/535 (50%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D V ++ + +LR ++ I Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAVAQRMETSATDLRRQFRENKI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ N IT+ FAD+ ++ D + + L ++T + + Sbjct: 163 KFNSLALTNNVITVQFADNADRDVAMDFLRRNGNEY--------TQQALASSTGSTLKLT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ S+A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V + G Q L++ ++G Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYESLDSGRQLLLQRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F + V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKINYVTDPK 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QA+ +I+G + + A LA MLRAG+L + V Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I KG + G +L+ ++M+V + +GL+A+F++ N+ + L ++S Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRVFGLIANFALVFNLAMILTVMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE S ++ G+ RAY+TIFDSN Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I ++ Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLK 629 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 N D + N + L G S Q + + Sbjct: 386 KINYVTDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAG 445 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +VGP + +E I KG++ I + + I++ + F+ F L A L+ + Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRV-FGLIANFALVFN 504 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + L + G L +A ++ IG +V+ V++ +R+R+ M S + I Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVA 561 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ F+ + G I FA+ + GI+ + ++I + I+ I Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQII 621 Query: 824 YDWRAKNARI 833 Y R ++ Sbjct: 622 YGKRRNLKKL 631 Score = 42.4 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44 MR W +L ++ I L ALP+ P + A +I Sbjct: 1 MRYPAWKYLLILVVLVISTLYALPSLYPDEPAVQISGAKAGTQI 44 >gi|90416762|ref|ZP_01224692.1| protein-export membrane protein SecF [marine gamma proteobacterium HTCC2207] gi|90331515|gb|EAS46751.1| protein-export membrane protein SecF [marine gamma proteobacterium HTCC2207] Length = 304 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 162/289 (56%), Gaps = 6/289 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM R S + I S+ L T GL G+DF GG Q+ V +P D++ +R LE Sbjct: 7 YNFMGLRKIAAICSAVLLIASVASLSTKGLVLGLDFSGGTQIEVGYEQPADVTAIREQLE 66 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + + E + L+RLQ +P + + E V + ++ + VGP Sbjct: 67 AAGFEGPVVIQYGSETDVLIRLQGKP-----EQGLSEKVYAVLEGGSEAVELRRVDFVGP 121 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 +I EL G +G++ + +++Y+ IRF+ F++GA+ L D+ TLGFF++ +EF+ Sbjct: 122 QIGEELREDGGLGMLTALAVVMLYVAIRFQLKFSIGAVLALAHDVIITLGFFSITALEFD 181 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AA+L ++GYS+ND +VV DR+R+N + + ++I++S+++TL R++ TS+ Sbjct: 182 LTVLAAILAVVGYSLNDTIVVSDRIRENFRKIRK-ATPVEVINESLSQTLWRTINTSVTT 240 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +L + GG +I +FA+ + G+ + SSI++AA ++L + R Sbjct: 241 MLVLLALFFIGGELIHNFAVALMVGVGIGTYSSIYVAATVMLALKVDRE 289 >gi|78043746|ref|YP_360343.1| preprotein translocase subunit SecF [Carboxydothermus hydrogenoformans Z-2901] gi|77995861|gb|ABB14760.1| protein-export membrane protein SecF [Carboxydothermus hydrogenoformans Z-2901] Length = 287 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 92/292 (31%), Positives = 156/292 (53%), Gaps = 7/292 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 ++ R + IS+L + I LF GLN+GIDF GG L V ++ V +R+ + Sbjct: 2 FHIIKNRKYWYIISLLIIVPGIISLFIQGLNWGIDFTGGTILEVKFSKNVVSQDIRNVIT 61 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + S Q Y T + V K + + + + + +G Sbjct: 62 QMGFKVSSIQLTGEGN-------YLIRTEELDTVKRDAVIKALEDKLGKVEVLREDRIGS 114 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 +SREL++K + ++I+++ ML+YI RF++YF + AI L+ D+ T+G F++F E + Sbjct: 115 VVSRELLQKAFLALLIASVLMLLYITFRFEFYFGVAAIIALLHDVFVTIGLFSIFQWEVD 174 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 + VAA+LT+IGYS+ND +V++DR+R+N+K + DLI+KS+ +T+ RS+ T + Sbjct: 175 SSFVAAILTIIGYSINDTIVIFDRIRENLKKREKGEALDDLINKSLWQTMARSINTVLTV 234 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ + ++GGS I F M G+ A SSIF A+PI + +K Sbjct: 235 IFVLVSLLLFGGSSIKVFVTAMLIGVTSGAYSSIFNASPIWFDLKRLSSKRK 286 >gi|153875720|ref|ZP_02003395.1| Protein-export membrane protein [Beggiatoa sp. PS] gi|152067816|gb|EDN66605.1| Protein-export membrane protein [Beggiatoa sp. PS] Length = 318 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 97/297 (32%), Positives = 158/297 (53%), Gaps = 4/297 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM R + IS + SI L T GL +G+DF GG + V +PV+ Sbjct: 1 MLLTRFDYKIDFMGKRHIAMWISAILMTVSIASLATQGLVFGLDFTGGTLVEVRYKQPVE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI---TEIVP 647 L +R L + Q F + +RL+ + + + ++ Sbjct: 61 LEPIRKTLRENGFPEAVIQYFGTSHDVSIRLKAHEENEENKEEPISTKILRLLQQQSGGQ 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++ E VGP+I EL+ KG + V+ + +LIY+W RF++ FALGAI L+ D Sbjct: 121 EVEMRRVEYVGPQIGSELVEKGGLAVLWTLFGILIYVWFRFEYRFALGAIAALVHDTLIV 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G F++F +EF+LT +AAVL +IGYS+ND +VV+DR+R+N S ++++KSIN+ Sbjct: 181 VGIFSIFRLEFDLTVLAAVLAVIGYSLNDTIVVFDRIRENFVKLRK-QSAIEVMNKSINQ 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 LGR+V TS+ + ++ + GG +I F+ + G+++ SSI+IA+ L + Sbjct: 240 MLGRTVMTSVTTALVLIVLFTIGGELIHGFSTALLIGVIIGTYSSIYIASASALVLG 296 >gi|91763287|ref|ZP_01265251.1| protein-export membrane protein SECD [Candidatus Pelagibacter ubique HTCC1002] gi|91717700|gb|EAS84351.1| protein-export membrane protein SECD [Candidatus Pelagibacter ubique HTCC1002] Length = 517 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 185/519 (35%), Positives = 309/519 (59%), Gaps = 9/519 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + + L S++ + IA NF + +I+LGLDL+GGS+L+LE+D + Sbjct: 5 SKLRITLVSLVSIFFIFIAASNFQNPE------DSFISKKINLGLDLQGGSYLLLEIDNE 58 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 LQ + +R+FLK + I +R KI S + E + +N Sbjct: 59 PVEIQKLQNTTTVIRNFLKDKKITFNDLRIEDKKIIFSIPND-NIELVQSFFLDKESDIN 117 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 V + E ++ LS+ + ++ + + +Q++EI+R+R+D++G +E I + Sbjct: 118 PYYFQYKSHQFDVNIQDNEFTLTLSKYGLIEIKTSSQDQAIEIVRRRVDEVGTNEPNILK 177 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243 G++RIL++LPG DP R++ LLG TA ++F V NN+ ++F + ++ +V Sbjct: 178 RGNNRILVELPGLDDPMRIKSLLGKTANLTFRFVTQNNNDTFGTEMLQFEDGT--SEAMV 235 Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303 ++ ++G +L A + +T++ VV + D +GA+RF + T IGK LA+VLDG+++ Sbjct: 236 SKRIILNGENLLDAQPQMNNQTNETVVSFTLDRVGAKRFGKATSTGIGKQLAIVLDGKIV 295 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 +APVI I SG QISGNFT ++A LA +LR+G+LP LNI+EER VG DLG DSI Sbjct: 296 SAPVIRDTIASGNGQISGNFTFQSATDLALLLRSGALPAPLNIIEERTVGPDLGQDSINA 355 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G A++ G +L+++FM + Y +GL+A+ ++ +N+ + +L+L ATLTLP IAGI+L Sbjct: 356 GVIALMIGFLLVIIFMFIKYRIFGLIANITLLINLFFLVGILTLFEATLTLPGIAGIILT 415 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ ERI+EE +K ++ + D G+ ++ + I D+NIT LIA V+LFF G G Sbjct: 416 VGMAVDANVLIFERIKEECKKEKNNIIAFDTGYVKSKTAIIDANITTLIAAVILFFMGSG 475 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 V+GF++T+ + I ++F+ I R + + K K+ Sbjct: 476 PVKGFSVTLAVGIFTTLFSVYFIARMLTGLYVVRNKEKT 514 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 85/178 (47%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + ++ I G++ ++I + ++I+++I+++ F L A TL++++ +G LF Sbjct: 343 TVGPDLGQDSINAGVIALMIGFLLVIIFMFIKYRI-FGLIANITLLINLFFLVGILTLFE 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+++ K + D ++ + Sbjct: 402 ATLTLPGIAGIILTVGMAVDANVLIFERIKEECK---KEKNNIIAFDTGYVKSKTAIIDA 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I+ + + G + F++ +A GI S FIA + + ++ Sbjct: 459 NITTLIAAVILFFMGSGPVKGFSVTLAVGIFTTLFSVYFIARMLTGLYVVRNKEKTKL 516 >gi|145628557|ref|ZP_01784357.1| preprotein translocase subunit SecF [Haemophilus influenzae 22.1-21] gi|145639849|ref|ZP_01795450.1| protein export protein SecF [Haemophilus influenzae PittII] gi|148825478|ref|YP_001290231.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE] gi|144979027|gb|EDJ88713.1| preprotein translocase subunit SecF [Haemophilus influenzae 22.1-21] gi|145271067|gb|EDK10983.1| protein export protein SecF [Haemophilus influenzae PittII] gi|148715638|gb|ABQ97848.1| protein export protein SecF [Haemophilus influenzae PittEE] Length = 324 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 5/309 (1%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 + +FM+ R G +S L + S+ + T G N+G+DF GG+ Sbjct: 6 KDKGGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGLDFTGGV 65 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 ++ +L +R+ L I Q ++ ++RL DS + E VK Sbjct: 66 VFDTHFSQSANLEQIRNKLHENGIESPVVQTTGSVQDVMIRLPASNNDST----IGEHVK 121 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + + I++ E VGP + EL + + + + +LIY+ RF+W G+I + Sbjct: 122 SMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSIAS 181 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L D+ TLG F+ IE +LT VAA+L+++GYS+ND +VV+DR+R+N + + D Sbjct: 182 LAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-RRLDTID 240 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +ID S+ +TL R++ TS+ + V+ + +GG I +F++ + GI SSIF+A I Sbjct: 241 IIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIAI 300 Query: 820 LLFIYDWRA 828 + R Sbjct: 301 AYDVGLRRE 309 >gi|94498647|ref|ZP_01305199.1| protein-export membrane protein SecD [Sphingomonas sp. SKA58] gi|94421877|gb|EAT06926.1| protein-export membrane protein SecD [Sphingomonas sp. SKA58] Length = 532 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 187/532 (35%), Positives = 295/532 (55%), Gaps = 14/532 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + W + + IG+L A+P+FLP + + + P M + R++LGLDL GGSHL+LE Sbjct: 5 SRWAIAAILLPLLIGVLCAVPSFLPDAAVAKLPGFM-QTRVNLGLDLAGGSHLLLEASTQ 63 Query: 64 DFVNGFLQMYSDELRSFLK--KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D L +++R+ L+ I + + K++ D + +++ Sbjct: 64 DVARQRLVNMEEQVRTELRRGDPRIAIGDISSRDGKLSFMVRDPAQVDAAVERIR---PL 120 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + + I I + ID I A+E + E+IR+RID++G E TI Sbjct: 121 TQGAGLTGQRDFNVEVVNSSTIVITPTDAGIDNAIKSAMEVATEVIRKRIDEMGTREPTI 180 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233 Q+ G +RI++Q+PG Q+P L+ LLG TAK+ F V + G + Sbjct: 181 QQQGDNRIVVQVPGLQNPKALKDLLGQTAKLEFKLVDTAANPAEVAQGRAPVGSEVLPYP 240 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 + G + + + + ++ +V+I F+ G R+F +VT N+ +P Sbjct: 241 DNPSGVPVIAVKRQVMVSGEDLTDATQGYDQNNQAIVNIRFNGSGGRKFGQVTSQNVNRP 300 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 A++LDGRVL+AP IN+ I G AQISGNFT+E+A LA LR+G LP+ L +VEER VG Sbjct: 301 FAIILDGRVLSAPNINEPILGGSAQISGNFTVESANQLAIALRSGKLPVALTVVEERTVG 360 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 LG+DSI G A + +V + FM V YG++G+ A+ ++ +NV++ L ++ +LGATLT Sbjct: 361 PGLGADSIRAGLIASIIAVVAVAAFMFVSYGRFGVYANIAVAINVLVILGVMGILGATLT 420 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAG VL IG AVD+N+L+ ERIREE R+ ++V +++ G+ A TIF++N+T IA Sbjct: 421 LPGIAGFVLTIGTAVDANVLIYERIREERRRGRNVVQAIEHGYKEASRTIFEANVTHAIA 480 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 ++ G G V+GFAI + + I S+FTA++ R + +R K+ I I Sbjct: 481 GGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTRLLASRWVRAKRPTEITI 532 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 71/174 (40%), Gaps = 4/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + + IR G++ II+ +A+ ++++ + F + A + +++ LG + G Sbjct: 358 TVGPGLGADSIRAGLIASIIAVVAVAAFMFVSYG-RFGVYANIAVAINVLVILGVMGILG 416 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A + IG +V+ V++Y+ + + + I+ E Sbjct: 417 ATLTLPGIAGFVLTIGTAVDANVLIYE---RIREERRRGRNVVQAIEHGYKEASRTIFEA 473 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 ++ I+ M G + FAI + GI + +++ + + Sbjct: 474 NVTHAIAGGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTRLLASRWVRAKRP 527 >gi|71083672|ref|YP_266392.1| protein-export membrane protein SECD [Candidatus Pelagibacter ubique HTCC1062] gi|71062785|gb|AAZ21788.1| protein-export membrane protein SECD [Candidatus Pelagibacter ubique HTCC1062] Length = 517 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 186/519 (35%), Positives = 309/519 (59%), Gaps = 9/519 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + + L S++ + IA NF + +I+LGLDL+GGS+L+LE+D + Sbjct: 5 SKLRITLVSLVSIFFIFIAASNFQNPE------DSFISKKINLGLDLQGGSYLLLEIDNE 58 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 LQ + +R+FLK + I +R KI S + E + +N Sbjct: 59 PVEIQKLQNTTTVIRNFLKDKKITFNDLRIEDKKIIFSIPND-NIELVQSFFLDKESDIN 117 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 V + E ++ LS+ + ++ + + +Q++EI+R+R+D++G +E I + Sbjct: 118 PYYFQYKSHQFDVNIQDNEFTLTLSKYGLIEIKTSSQDQAIEIVRRRVDEVGTNEPNILK 177 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243 G++RIL++LPG DP R++ LLG TA ++F V NN+ ++F + ++ +V Sbjct: 178 RGNNRILVELPGLDDPMRIKSLLGKTANLTFRFVTQNNNDTFGTEMLQFEDGT--SEAMV 235 Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303 ++ ++G +L A + +T++ VV + D +GA+RF + T IGK LA+VLDG+++ Sbjct: 236 SKRIILNGENLLDAQPQMNNQTNETVVSFTLDRVGAKRFGKATSTGIGKQLAIVLDGKIV 295 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 +APVI I SG QISGNFT ++A LA +LR+G+LP LNI+EER VG DLG DSI Sbjct: 296 SAPVIRDTIASGNGQISGNFTFQSATDLALLLRSGALPAPLNIIEERTVGPDLGQDSINA 355 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G A++ G +L+++FM V Y +GL+A+ ++ +N+ + +L+L ATLTLP IAGI+L Sbjct: 356 GVIALMIGFLLVIIFMFVKYRIFGLIANITLLINLFFLVGILTLFEATLTLPGIAGIILT 415 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ ERI+EE +K ++ + D G+ ++ + I D+NIT LIA V+LFF G G Sbjct: 416 VGMAVDANVLIFERIKEECKKEKNNIIAFDTGYVKSKTAIIDANITTLIAAVILFFMGSG 475 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 V+GF++T+ + I ++F+ I R + + K K+ Sbjct: 476 PVKGFSVTLAIGIFTTLFSVYFIARMLTGLYVVRNKEKT 514 Score = 139 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + ++ I G++ ++I + ++I+++++++ F L A TL++++ +G LF Sbjct: 343 TVGPDLGQDSINAGVIALMIGFLLVIIFMFVKYRI-FGLIANITLLINLFFLVGILTLFE 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+++ K + D ++ + Sbjct: 402 ATLTLPGIAGIILTVGMAVDANVLIFERIKEECK---KEKNNIIAFDTGYVKSKTAIIDA 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I+ + + G + F++ +A GI S FIA + + + Sbjct: 459 NITTLIAAVILFFMGSGPVKGFSVTLAIGIFTTLFSVYFIARMLTGLYVVRNKEKTEL 516 >gi|323137256|ref|ZP_08072335.1| protein-export membrane protein SecF [Methylocystis sp. ATCC 49242] gi|322397614|gb|EFY00137.1| protein-export membrane protein SecF [Methylocystis sp. ATCC 49242] Length = 370 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 182/302 (60%), Gaps = 4/302 (1%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L P+ FMR R S + S+ ++ L G+N+GIDF GG + + A Sbjct: 1 MKLLRLAPENTKFPFMRFRRVSYPFSAVLSLIAVALFVFKGMNFGIDFAGGTVIELRAKS 60 Query: 588 PV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 ++ +R+ ESL++GDI Q F + +R Q A+ + E V++ + Sbjct: 61 GAAEVGTLRTLGESLKLGDIEVQAFGNPADATLRFGLQGQGEPAKQQ--EAVERVRAAVG 118 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 ++ E+VGP++S EL++ G +GV++S IA+L Y+W RF+W FA+GA+ + D+ Sbjct: 119 ADYDLRRVEVVGPRVSNELVQSGTLGVVLSIIAVLTYLWFRFEWQFAIGAVIATMHDLLL 178 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T+GFF++ +EFN T++AA+LT++GYS+N+ VVV DR+R+NM+ Y ++ +ID SIN Sbjct: 179 TVGFFSITQLEFNTTSIAAILTIVGYSLNETVVVLDRIRENMRKY-KKMATAQMIDMSIN 237 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 L R++ T+ +++L + ++GG VI SF++ M +GI VA SSIFI +P+L+++ Sbjct: 238 AVLPRTIMTATTVMLALLSLVIFGGQVIRSFSLAMIWGIFVATYSSIFICSPMLIYLGLR 297 Query: 827 RA 828 Sbjct: 298 NE 299 >gi|332288532|ref|YP_004419384.1| preprotein translocase subunit SecF [Gallibacterium anatis UMN179] gi|330431428|gb|AEC16487.1| preprotein translocase subunit SecF [Gallibacterium anatis UMN179] Length = 324 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 168/309 (54%), Gaps = 4/309 (1%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 MK+ D + + I FMR R G +SI+ S+ + T G N+G+DF GG Sbjct: 1 MKNTDNQTETVNDIKLPYKLIHFMRYRMVGYALSIIVVAISLFFIITKGFNWGLDFTGGT 60 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + ++P DL +RS L + + Q G ++ +VR+ D T + ++ Sbjct: 61 VIDTSFSQPADLPKIRSILAQNGLDNAVVQASGGVRDVMVRVPASVNDPNIGTHIKTILS 120 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 I +I++ E VGP + EL I +I+ +L+Y+ +RF+W ALGAI + Sbjct: 121 DNI---DKDVSIRSIEFVGPNVGEELTTSAIYATLITLAMLLLYVGLRFEWRLALGAILS 177 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L D+ TLGFFA+ +E +LT VAA+L++IGYS+ND +VV+DR+R+N + S + Sbjct: 178 LAHDVIVTLGFFAMLQVEIDLTFVAAILSVIGYSLNDSIVVFDRVRENFRKI-RRASTVE 236 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +I+ S+++TL R++ TS+ I V+ + ++GG I SF++ + GI SSI+IA + Sbjct: 237 IINISLSQTLSRTLMTSITTLIVVIALLLFGGPTIHSFSLALLIGIGFGTYSSIYIAIAL 296 Query: 820 LLFIYDWRA 828 L R Sbjct: 297 ALNFGLKRE 305 >gi|299531885|ref|ZP_07045285.1| preprotein translocase subunit SecD [Comamonas testosteroni S44] gi|298720060|gb|EFI61017.1| preprotein translocase subunit SecD [Comamonas testosteroni S44] Length = 632 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 169/529 (31%), Positives = 275/529 (51%), Gaps = 22/529 (4%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ R P + + LGLDLRGG H +L+VD + + Y+ +LRS ++ + I Sbjct: 109 NLVSRSPDWLTAIGAKPMYLGLDLRGGVHFMLQVDMAAALTKKAESYAGDLRSSMRDKNI 168 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + N +T+ D + + D T ++ Sbjct: 169 RHGGVSRDGNNVTIRVRDEATLTAARNLIADQF--------PDLAATSTPDGTGFKLVAS 220 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + + +V A++Q++ + RI+++G++E IQ+ G RI++QLPG QD ++ + +L Sbjct: 221 IKPEALRKVQEQALKQNIVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDIL 280 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGIHLNGATA 259 G TA + V + + G + D +G +V+ +V ++G +L A Sbjct: 281 GRTATLEVRMVDESAEARAAEMGSGPVPFGSEKYLDRNGQGIIVQKQVTLTGENLTDAQP 340 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSG 315 FD +T +P V+++ D GAR F +VTR+N+GK + G V+TAPVI I G Sbjct: 341 GFDSQTQEPTVNLTLDAKGARIFKDVTRENVGKRMAIILFEKGKGEVVTAPVIRGEIGGG 400 Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375 + QISG T A + +LRAGSL + I+EE +G LG+D+I +G ++V G+V + Sbjct: 401 RVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNIDRGIHSVVWGMVAV 460 Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435 FM V Y +G+++ S+ +NV+L LA+LS+L ATLTLP IA + L +G+A+DSN+L+N Sbjct: 461 AAFMCVYYMLFGVISTISLGINVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495 ERIREE R S ++ G+ A+ TI DSN+T LI + L FG G VRGFA+ + Sbjct: 521 ERIREELRAGASPQAAIHAGYEHAWHTILDSNVTTLIVGLALLAFGSGVVRGFAVVHCIG 580 Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544 IL SMF+A+ R ++ +K ++ Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGGRKKLKSLAIGQVWKPEGEGHRSVAGRG 629 Score = 137 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 86/212 (40%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I +GI V+ +A+ Sbjct: 402 VQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNIDRGIHSVVWGMVAVA 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + + F + + +L +++ L ++ L +AA+ +G +++ V++ Sbjct: 462 AFMCVYY-MLFGVISTISLGINVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ S + I + +++ I L + +G V+ FA+ Sbjct: 521 ERIREELRA---GASPQAAIHAGYEHAWHTILDSNVTTLIVGLALLAFGSGVVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++F + ++ Y R K + Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGGRKKLKSL 609 Score = 46.2 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 30/118 (25%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + +G+L LPNF ++ ++V Sbjct: 3 RYPVWKYAIIVIALLVGVLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 ++ S L + SM + F + D + L Sbjct: 38 SAKSTVKVDNAVLQKVESALSAASVKATSMSLEGTSVRARFDTPDEQLKAKDVIQKAL 95 >gi|309750344|gb|ADO80328.1| General secretory pathway component SecF [Haemophilus influenzae R2866] Length = 325 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 90/315 (28%), Positives = 157/315 (49%), Gaps = 5/315 (1%) Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 +++ + +FM+ R G +S L + S+ + T G N+G+ Sbjct: 1 MMKLFTKDKGGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGL 60 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 DF GG+ ++ +L +R+ L I Q ++ ++RL DS Sbjct: 61 DFTGGVVFDTHFSQSANLEQIRNKLHENGIESPVVQTTGSVQDVMIRLPASNNDST---- 116 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693 + E VK + + I++ E VGP + EL + + + + +LIY+ RF+W Sbjct: 117 IGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLG 176 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 G+I +L D+ TLG F+ IE +LT VAA+L+++GYS+ND +VV+DR+R+N + Sbjct: 177 FGSIASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-R 235 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 + D+ID S+ +TL R++ TS+ + V+ + +GG I +F++ + GI SSI Sbjct: 236 RLDTIDIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSI 295 Query: 814 FIAAPILLFIYDWRA 828 F+A I + R Sbjct: 296 FVAIAIAYDVGLRRE 310 >gi|145631087|ref|ZP_01786862.1| protein export protein SecF [Haemophilus influenzae R3021] gi|148827378|ref|YP_001292131.1| preprotein translocase subunit SecF [Haemophilus influenzae PittGG] gi|144983372|gb|EDJ90854.1| protein export protein SecF [Haemophilus influenzae R3021] gi|148718620|gb|ABQ99747.1| protein export protein SecF [Haemophilus influenzae PittGG] Length = 324 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 91/309 (29%), Positives = 154/309 (49%), Gaps = 5/309 (1%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 + +FM+ R G +S L + S+ + T G N+G+DF GG+ Sbjct: 6 KDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGLDFTGGV 65 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 ++ +L +RS L I Q ++ ++RL DS + E VK Sbjct: 66 VFDTHFSQSANLEQIRSKLHENGIESPVVQTTGSVQDVMIRLPASNNDST----IGEHVK 121 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + + I++ E VGP + EL + + + + +LIY+ RF+W G+I + Sbjct: 122 SMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSIAS 181 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L D+ TLG F+ IE +LT VAA+L+++GYS+ND +VV+DR+R+N + + D Sbjct: 182 LAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-RRLDTID 240 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +ID S+ +TL R++ TS+ + V+ + +GG I +F++ + GI SSIF+A I Sbjct: 241 IIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIAI 300 Query: 820 LLFIYDWRA 828 + R Sbjct: 301 AYDVGLRRE 309 >gi|294140348|ref|YP_003556326.1| protein-export membrane protein SecF [Shewanella violacea DSS12] gi|293326817|dbj|BAJ01548.1| protein-export membrane protein SecF [Shewanella violacea DSS12] Length = 315 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 171/299 (57%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ + F+R +S++ + S+ L T G+N+G+DF GG + + ++PV Sbjct: 1 MFQILSIKGTVNFLRHAVPISILSLILVLGSLASLATKGINWGLDFTGGTVVELEFSKPV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L V+R+ L S ++ + QNF ++ L+RL + + V + ++ P Sbjct: 61 NLEVLRAELSSDEMQGVVVQNFGSSRDILIRLPVKADIKSDTQ--VGYVMEAGNKLDPQV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E+VGP+I +EL +G + V+++ I +LIY+ RF+W A+G++ L D+ TLG Sbjct: 119 IQKRVEMVGPQIGKELAEQGGLAVLVALICILIYVSFRFEWRLAMGSVVALAHDVIITLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ ++F+LT +A VLT++GYS+ND +VV+DR+R+N ++++ SI +T+ Sbjct: 179 VFSVLQLDFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKGGP-EEVVNTSITQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T+ + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 238 SRTIITTATTLVVVIALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296 >gi|165976491|ref|YP_001652084.1| preprotein translocase subunit SecF [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150395|ref|YP_001968920.1| preprotein translocase subunit SecD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303253356|ref|ZP_07339505.1| preprotein translocase subunit SecF [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249162|ref|ZP_07531167.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307257113|ref|ZP_07538886.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307263739|ref|ZP_07545345.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876592|gb|ABY69640.1| protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915526|gb|ACE61778.1| protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648038|gb|EFL78245.1| preprotein translocase subunit SecF [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854332|gb|EFM86530.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306864384|gb|EFM96294.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306870860|gb|EFN02598.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 324 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 162/297 (54%), Gaps = 4/297 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM+ R+ G S++ + I + T G N+G+DF GG + ++P DLS VR Sbjct: 16 PYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLSKVR 75 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 LE G+ Q +K ++RL GD +++++V + + P +TI++ E Sbjct: 76 GLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQDL---DPAATIKSVE 132 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + +L+Y+ RF+ A+G I L D+ T+G F+ Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTIGIFSFLQ 192 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N ++ +++ID S+++TL R++ T Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKI-RRVTSQEVIDISLSQTLSRTLMT 251 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 S+ V + +GG I SF++ + GI SSI+IA + L + R + Sbjct: 252 SVTTLFVVAALFWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVK 308 >gi|117619487|ref|YP_856274.1| protein-export membrane protein SecF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560894|gb|ABK37842.1| protein-export membrane protein SecF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 315 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR GV S L + S+ LF GLN+G+DF GG + V + V Sbjct: 1 MFQILHFEKPIPFMRYARPGVVFSTLLMVISLFFLFDRGLNWGLDFTGGTTIEVGFQQSV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 L V L+ +I + Q+F ++ L RL + G V Q V I P + Sbjct: 61 SLDKVHQVLDEQKIEGATLQHFGSSRDVLFRLTPKEGVKVEQQ--GNEVLAAAKLIDPAA 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + ++ S + +LIY+ +RF+W A+G I +L+ D+ TLG Sbjct: 119 VLKRVEFVGPSVGDELATDGALAMLASILCILIYVAVRFEWRLAMGGILSLVHDVVITLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 FA F EF+LT +AA++TL+GYS+ND +VV+DR+R+N + ++D S+ ETL Sbjct: 179 VFAYFQYEFDLTVLAALMTLVGYSLNDTIVVFDRLRENFRKVRKG-DTEYILDLSMTETL 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS F+ VL + + GG +I F++ M G+ SSI++A+ +F R Sbjct: 238 SRTIITSGLTFVVVLALLLKGGPLIHGFSVAMVIGVAFGTYSSIYVASSFAMFFGVKRE 296 >gi|91792762|ref|YP_562413.1| preprotein translocase subunit SecF [Shewanella denitrificans OS217] gi|91714764|gb|ABE54690.1| protein translocase subunit secF [Shewanella denitrificans OS217] Length = 315 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 161/295 (54%), Gaps = 3/295 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F L A+ F+R +S++ I S L T G+N+G+DF GG + + ++P Sbjct: 1 MFQLFAVKDAVDFLRHAKPISIMSMILVIASFVSLGTQGINWGLDFTGGTVVELEFSKPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DLS +R L S++ QNF + LVRL + ++ + + Sbjct: 61 DLSQLRGTLTSVEAQGAVVQNFGSSHDVLVRLPVKLDIKSDLQ--VKAIMDGALSLDADV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E VGP++ ++L +G + VI++ I +LIY+ RF+W A+G++ L D+ TLG Sbjct: 119 IQKRVEFVGPQVGKQLAEQGGLAVIVALICILIYVSFRFEWRLAMGSVAALAHDVIVTLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ +EF+LT +A +LT+IGYS+ND +VVYDR+R+N ++++ SI +T+ Sbjct: 179 VFSVLQLEFDLTVLAGLLTVIGYSLNDTIVVYDRIRENFLKMRKGGPI-EVVNTSITQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R+V T+ + V + + GGS+I FA + GI V SSI++A+ + + + Sbjct: 238 SRTVITTGTTLVVVAALFIKGGSMIHGFATALLLGIFVGTYSSIYVASYLAIKLG 292 >gi|254455897|ref|ZP_05069326.1| protein-export membrane protein SecD [Candidatus Pelagibacter sp. HTCC7211] gi|207082899|gb|EDZ60325.1| protein-export membrane protein SecD [Candidatus Pelagibacter sp. HTCC7211] Length = 517 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 183/519 (35%), Positives = 307/519 (59%), Gaps = 9/519 (1%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + ++ ++ + +LIA N +F + +I+LGLDL+GGS+L+LE+D Sbjct: 5 SKLRILFITLFSLLFVLIASSNLF------KFDDSFFDKKINLGLDLQGGSYLLLEIDNA 58 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 + LQ + +R++ K++ I + +++ I + + K+ I D T +N Sbjct: 59 PVIEQKLQNLTTSIRNYFKEKDIKINNIKIENQNIYFNV-LEKNKQTIIDTFTDENSDIN 117 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 L + T + S+ + + + + +Q++EI+R+RID++G +E I + Sbjct: 118 PYYPRFKSHQLEIEDTGLNFKLNFSRQGLIVLKTSSQDQAIEIVRRRIDEVGTNEPNILK 177 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243 G++RIL++LPG DP R++ LLG TA ++F V +++ + ++F D + V Sbjct: 178 RGNNRILVELPGLDDPMRVKSLLGKTANLTFRFVTNDDNDSFGVEKLKFEDGID--EATV 235 Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303 ++ ISG +L A D +T++ +V S D +GA+RF + T IGK LA+VLDG+++ Sbjct: 236 SKRIIISGDNLLDAQPKMDTQTNQTIVSFSLDRVGAKRFGKATSTGIGKQLAIVLDGKII 295 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 +APV+ I SG QISG FT +TA LA +LR+G+LP LNI+EER VG DLG DSI Sbjct: 296 SAPVVRDTIASGSGQISGGFTFQTATDLALLLRSGALPAPLNIIEERTVGPDLGQDSINA 355 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G A+ G +L+++FM V Y +GL+ + ++ +N+ + L +L+L ATLTLP IAGI+L Sbjct: 356 GMIALAIGFLLVIIFMFVKYRVFGLITNVTLIINLFILLGILTLFEATLTLPGIAGIILT 415 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ ERI+EE R + + D G++++ + I D+NIT L+A V+LFF G G Sbjct: 416 VGMAVDANVLIFERIKEELRDENNNIVAFDSGYTKSRTAIIDANITTLLAAVILFFMGSG 475 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 V+GF++T+G+ I ++F+ I R + + K Sbjct: 476 PVKGFSVTLGVGIFTTLFSVYFIARLFTSLYVSKNRDKE 514 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 82/178 (46%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + ++ I G++ + I + ++I+++++++ F L TLI+++ LG LF Sbjct: 343 TVGPDLGQDSINAGMIALAIGFLLVIIFMFVKYRV-FGLITNVTLIINLFILLGILTLFE 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+++ ++ +I D ++ + Sbjct: 402 ATLTLPGIAGIILTVGMAVDANVLIFERIKEELRDENNNI---VAFDSGYTKSRTAIIDA 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ + + G + F++ + GI S FIA ++ Sbjct: 459 NITTLLAAVILFFMGSGPVKGFSVTLGVGIFTTLFSVYFIARLFTSLYVSKNRDKEKL 516 >gi|260582876|ref|ZP_05850661.1| protein-export membrane protein SecF [Haemophilus influenzae NT127] gi|260094089|gb|EEW77992.1| protein-export membrane protein SecF [Haemophilus influenzae NT127] Length = 325 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 91/315 (28%), Positives = 157/315 (49%), Gaps = 5/315 (1%) Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 +++ + +FM+ R G +S L + S+ + T G N+G+ Sbjct: 1 MMKLFTKDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGL 60 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 DF GG+ ++ +L +RS L I Q ++ ++RL DS Sbjct: 61 DFTGGVVFDTHFSQSANLEQIRSKLHENGIESPVVQTTGSVQDVMIRLPASNNDST---- 116 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693 + E VK + + I++ E VGP + EL + + + + +LIY+ RF+W Sbjct: 117 IGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLG 176 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 G+I +L D+ TLG F+ IE +LT VAA+L+++GYS+ND +VV+DR+R+N + Sbjct: 177 FGSIASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-R 235 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 + D+ID S+ +TL R++ TS+ + V+ + +GG I +F++ + GI SSI Sbjct: 236 RLDTIDIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSI 295 Query: 814 FIAAPILLFIYDWRA 828 F+A I + R Sbjct: 296 FVAIAIAYDVGLRRE 310 >gi|260596779|ref|YP_003209350.1| preprotein translocase subunit SecF [Cronobacter turicensis z3032] gi|260215956|emb|CBA28575.1| Protein-export membrane protein secF [Cronobacter turicensis z3032] Length = 323 Score = 221 bits (562), Expect = 5e-55, Method: Composition-based stats. Identities = 84/301 (27%), Positives = 166/301 (55%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W IS L + SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFAISGLLLVASIVVMGVRGFNWGLDFTGGTVIEIGLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL ++R +LE + QNF ++ +VR+ G++ Q +++ Sbjct: 65 PADLDLMRESLEKAGFEEPLLQNFGSSRDIMVRMPPAQGETGGQALGTKVLTVINEATGQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++++ +++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 MGVLSLFRIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG+++ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLKRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|308050485|ref|YP_003914051.1| protein-export membrane protein SecD [Ferrimonas balearica DSM 9799] gi|307632675|gb|ADN76977.1| protein-export membrane protein SecD [Ferrimonas balearica DSM 9799] Length = 614 Score = 221 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 156/522 (29%), Positives = 271/522 (51%), Gaps = 37/522 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + N + LGLDLRGG + ++EVD ++ V+ + + R+ L+++ + Sbjct: 104 NLAPATPEWLKSLGGNPMKLGLDLRGGVNFLMEVDMNEAVHKQQEQIVTDFRADLREQRL 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R + + + + F D+ E + + D I Sbjct: 164 RYSGVRVVGDAVEVRFRDAAVAEQAYSYLRGRNANLVFSQPDDL-----------VILAT 212 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ + ++ +A+ Q++ I+R R++++G++E +QR G+ RI ++LPG QD +R +++L Sbjct: 213 LSEPYLKEIKEYALNQNINILRNRVNELGVAEPVVQRQGAERITVELPGVQDTARAKEIL 272 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V N G R D DG ++E +V ++G H+ GA + F Sbjct: 273 GATATLEFRMVAQNVDLNAATRGLVPPGTRLYEDRDGRPVVLEQQVILTGDHITGAQSGF 332 Query: 262 DPKTHKPVVDISFDEMGARR-----------------FFEVTRDNIGKPLAVVLDGRVLT 304 + V G + ++ T + + Sbjct: 333 SETSQPQVNINLDAAGGNKMADFTRDKIGAAMATVFIEYKPTGERNADGSPQFDKIEEVI 392 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 QA +I+G + A LA +LRAG+L + IV+ER +G LG ++I G Sbjct: 393 NVATIQARLGRNFRITGIGSPAEAHNLALLLRAGALIAPITIVQERTIGPSLGQENINNG 452 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G++ +V+FM + Y K+GL+A ++ +N+++ + ++S++ ATLTLP IAGIVL Sbjct: 453 MAALMWGMLAVVVFMAIYYRKFGLIAVGALVVNLVMIVGIMSMIPGATLTLPGIAGIVLT 512 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE + +SV ++ G+S A STI D+NIT LI ++LF G G Sbjct: 513 VGMAVDGNVLIFERIREELKAGRSVQQAIHEGYSNALSTIADANITTLITALILFAVGTG 572 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFA+T+ + I SMFT+I RA++ + K++K +DI Sbjct: 573 PVKGFAVTLMIGIATSMFTSIVGSRAVVNALWGGKRLKKLDI 614 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 98/248 (39%), Gaps = 6/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 ++ N + L R G + + Sbjct: 368 FIEYKPTGERNADGSPQFDKIEEVINVATIQARLGRNFRITGIGSPAEAHNLALLLRAGA 427 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ TI +GP + +E I G+ ++ +A+++++ I ++ F L A+ L++++ Sbjct: 428 LIAPITIVQERTIGPSLGQENINNGMAALMWGMLAVVVFMAIYYR-KFGLIAVGALVVNL 486 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ +K S + I + Sbjct: 487 VMIVGIMSMIPGATLTLPGIAGIVLTVGMAVDGNVLIFERIREELKA---GRSVQQAIHE 543 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LF 822 + L ++ I+ L + G + FA+ + GI + +SI + ++ Sbjct: 544 GYSNALSTIADANITTLITALILFAVGTGPVKGFAVTLMIGIATSMFTSIVGSRAVVNAL 603 Query: 823 IYDWRAKN 830 R K Sbjct: 604 WGGKRLKK 611 Score = 45.1 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + IG L A PN + + ++ LD Sbjct: 4 KYPMWKNLLVIFVIAIGALYAAPNLYGEDPALQI-----SATRNVALD------------ 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D++++ L+ EG+ S+ + +I F+++ + + V L Sbjct: 47 ---------SATLDQVQTALQGEGLSAKSVIMEEGQILARFSNAEDQIEAKEVVAQAL 95 >gi|313673202|ref|YP_004051313.1| protein-export membrane protein secd [Calditerrivibrio nitroreducens DSM 19672] gi|312939958|gb|ADR19150.1| protein-export membrane protein SecD [Calditerrivibrio nitroreducens DSM 19672] Length = 517 Score = 221 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 175/537 (32%), Positives = 295/537 (54%), Gaps = 41/537 (7%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 I ++ + L P RI+LGLDL+GG H++L V+ + Sbjct: 4 KLRWITILIVFVVSLFFMFP---------------LDKRINLGLDLKGGMHVILGVETEK 48 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVN 123 V + + ++R L+ I +++ ++ KI++ +D + + D ++ + Sbjct: 49 AVQAKIDTLTGQIRKELRNSKINFAFVQKNESGKISIGLSDPAERNKVKDLISKNYPILK 108 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 +K + ++ E+ ++ +A+EQ++++IR R+DQ G++E IQR Sbjct: 109 ESGLNSDEKVIELSLDTDEV---------KRIKDYAVEQAVQVIRNRVDQFGVNEPVIQR 159 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG----- 238 G IL+QL G DP R +L+G TA++ F+ + N + + + D Sbjct: 160 QGKEHILVQLAGITDPERAVKLIGKTAQLKFYLLDENANNEETIKSGNIPPDDIILYGKK 219 Query: 239 -----------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 Y+++ ++G +L A + ++P V I FD G++ F E+T Sbjct: 220 IDKVTGQIVSTIPYVLKKDAVLTGDYLLEAEVRISSQFNEPYVSIKFDPAGSKIFEEITA 279 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 +N+ K +A+VLD V +APVI + I G+AQISG+FT+E A LA +LRAGSLP + I+ Sbjct: 280 ENVNKRMAIVLDDNVYSAPVIRERIAGGEAQISGSFTLEEAKDLAIVLRAGSLPAPVKIL 339 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 E R +G LG DSI KG A + G+ +++FM++ Y G +A ++ N I+ L + + Sbjct: 340 ENRTIGPSLGQDSIKKGIWAGIIGVAAVIIFMLIYYKFSGFIASIALLSNAIIILGAMGM 399 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLTLP IAG++L +G+A+D+N+L+ ERIREE R ++ +L+ GF +A STI DSN Sbjct: 400 FKATLTLPGIAGLILTMGMAIDANVLIFERIREELRLGRTPMNALEAGFEKAMSTIIDSN 459 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 IT LIA +VLF FG G V+GFA+T+ + IL S+FTA+++ + + + + K++K + Sbjct: 460 ITTLIAGLVLFQFGTGPVKGFAVTLTIGILSSIFTAVTLSKTIFLTLYGNKEIKKLS 516 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 88/176 (50%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + ++ I+KGI II A++I++ I +K+ A L+ + LG +F Sbjct: 343 TIGPSLGQDSIKKGIWAGIIGVAAVIIFMLIYYKFS-GFIASIALLSNAIIILGAMGMFK 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +++ V++++R+R+ ++L + + ++ + + + + Sbjct: 402 ATLTLPGIAGLILTMGMAIDANVLIFERIREELRL---GRTPMNALEAGFEKAMSTIIDS 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ L + +G + FA+ + GI+ + +++ ++ I L +Y + Sbjct: 459 NITTLIAGLVLFQFGTGPVKGFAVTLTIGILSSIFTAVTLSKTIFLTLYGNKEIKK 514 >gi|271499571|ref|YP_003332596.1| protein-export membrane protein SecF [Dickeya dadantii Ech586] gi|270343126|gb|ACZ75891.1| protein-export membrane protein SecF [Dickeya dadantii Ech586] Length = 323 Score = 221 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 161/301 (53%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W +S L I SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYWAFALSGLLLILSIVVMGVRGFNWGLDFTGGTVIEISLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 VDL +R L+ D QNF ++ +VR+ +S Q ++V Sbjct: 65 SVDLEQMREALQKAGFADPLVQNFGSSRDIMVRMPPAHDESGGQALGSKVVNVINASTGQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + I +LIY+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMAALICILIYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 MGVLSLFNIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG+++ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGAMLKGFSLTMLIGVTIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|207721607|ref|YP_002252046.1| protein-export membrane protein secd [Ralstonia solanacearum MolK2] gi|206586768|emb|CAQ17353.1| protein-export membrane protein secd [Ralstonia solanacearum MolK2] Length = 627 Score = 221 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 168/515 (32%), Positives = 274/515 (53%), Gaps = 26/515 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL P +L + LGLDLRGG H +L+VD + + L Sbjct: 109 IVALNLLSGSPRWLTAIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ +G+ + + I++ F++ + + + + Sbjct: 160 AGDIRTQLRDKGVRHNGIERSGTTISIKFSNPDEADRARGLLADSTR--------ELAFA 211 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 T ++ + + +V +A++Q++ + R++++G+SE IQ+ G RI++QL Sbjct: 212 TDKTADGVTLTGTFTAAAMKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248 PG QD ++ + ++G TA + PN + G G L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARMADPNATGIPRLTDPVPLGDELFTQGRGAPVLLQKQVI 331 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G +N A+A FD H P VDI+ D G R +++RDNIGK +A+VL + + Sbjct: 332 FTGDRINSASAGFDQN-HNPSVDITLDGQGGRMLRDISRDNIGKRMAIVLFEKGKGEVLT 390 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G ++E+A LA +LRAGSL + I+EER +G LG+D+I +G Sbjct: 391 VATIQSELGSRFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKQGF 450 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + G I +FM++ Y +G + S+ +NV L +A+LS+L ATLTLP IA I L +G Sbjct: 451 DSAAYGFAAISVFMVLYYMLFGAFSVVSLGVNVFLLIAILSMLQATLTLPGIAAIALALG 510 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NERIREE R S ++ GF RA++TI DSN+T LIA + L FG G V Sbjct: 511 MAIDANVLINERIREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFA+ L IL SMF+A+ R+++ KK Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 78/181 (43%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I++G A+ +++ + + F ++ +L +++ + Sbjct: 429 MEIIEERTIGPSLGADNIKQGFDSAAYGFAAISVFMVLYY-MLFGAFSVVSLGVNVFLLI 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ S + I Sbjct: 488 AILSMLQATLTLPGIAAIALALGMAIDANVLINERIREELR---NGASPQMAIAAGFERA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FA+ GI+ + S++F ++ Y + Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604 Query: 829 K 829 K Sbjct: 605 K 605 Score = 37.7 bits (85), Expect = 9.0, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 15/33 (45%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34 R W ++ + IG L LPNF ++ + Sbjct: 3 RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQ 35 >gi|94311879|ref|YP_585089.1| preprotein translocase subunit SecF [Cupriavidus metallidurans CH34] gi|93355731|gb|ABF09820.1| SecYEG protein translocase auxiliary subunit [Cupriavidus metallidurans CH34] Length = 324 Score = 221 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 159/305 (52%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S L ++ L+ GL+ I+F GG + V + VD Sbjct: 1 MEFFRIKRDIPFMKHALIFNVVSFLTFAAAVFFLWHKGLHLSIEFTGGTVMEVNYQQAVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ---TRVLEMVKKKITEIVP 647 L VR + L D+ QNF ++ ++RL Q G Q + E V +T P Sbjct: 61 LEKVRGQVSKLGYSDVQVQNFGTSRDVMIRLPLQKGPDGKQVTSAQQSEQVMGALTAASP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G++ ++ ++IY+ RF+W FA+ I + D+ Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLCVVAGIVIYLSFRFEWKFAVAGIIANLHDVVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AA+L ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAAILAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + VL M +GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TMSRTIITHGSTEMMVLSMFFFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|229846327|ref|ZP_04466435.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1] gi|229810420|gb|EEP46138.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1] Length = 324 Score = 221 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 91/309 (29%), Positives = 154/309 (49%), Gaps = 5/309 (1%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 + +FM+ R G +S L + S+ + T G N+G+DF GG+ Sbjct: 6 KDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGLDFTGGV 65 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 ++ +L +RS L I Q ++ ++RL DS + E VK Sbjct: 66 VFDTHFSQSANLEQIRSKLHENGIESPIVQTTGSVQDVMIRLPASNNDST----IGEHVK 121 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + + I++ E VGP + EL + + + + +LIY+ RF+W G+I + Sbjct: 122 SMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSIAS 181 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L D+ TLG F+ IE +LT VAA+L+++GYS+ND +VV+DR+R+N + + D Sbjct: 182 LAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-RRLDTID 240 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +ID S+ +TL R++ TS+ + V+ + +GG I +F++ + GI SSIF+A I Sbjct: 241 IIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIAI 300 Query: 820 LLFIYDWRA 828 + R Sbjct: 301 AYDVGLRRE 309 >gi|92114952|ref|YP_574880.1| preprotein translocase subunit SecD [Chromohalobacter salexigens DSM 3043] gi|91798042|gb|ABE60181.1| protein-export membrane protein SecD [Chromohalobacter salexigens DSM 3043] Length = 616 Score = 221 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 169/522 (32%), Positives = 271/522 (51%), Gaps = 36/522 (6%) Query: 30 SMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ D P + + LGLDL+GG H +LEVD D V L+ + +R L+ E I Sbjct: 105 NLADATPGWLQALSATPMKLGLDLQGGVHFLLEVDMDAAVEQRLEANASAVRDLLRDERI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 IT FA++ + +T + +++ Sbjct: 165 RYRDTSIDGRAITFQFANADDRNAARGLITDQFPDFEYSTPDTER--------GASLTMT 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + + + +A+ Q++ IR R++++G+SE +QR G RI+++LPG QD + ++++ Sbjct: 217 FTDQAVQDLQDYAVNQNLTTIRNRVNELGVSEPLVQRQGPSRIVVELPGVQDTAAAKRIV 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F R+ +G + + ++G H++ A+ +FD Sbjct: 277 GATANLEFRLEA-RPDTPEREIETLPFRNDEGRSADLMRDIIVTGDHVSSASRSFDENN- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+I+ D G TR NIG+ +AVV + Sbjct: 335 RPQVNINLDGTGGSMMSRATRANIGRNMAVVFIEHKTRTRTVMEDGEEVEKREAYTERGI 394 Query: 309 -----NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ + +I+G + AG LA +LR+GSL + +ER +G LG+ +I + Sbjct: 395 ISLATIQSTLGNRFRITGLESASEAGDLALLLRSGSLAAPIYFAQERTIGPSLGAQNIAQ 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G ++ GL+L+VLFM+ Y +G+VA+ S+ LN++L +A +SLLGATLTLP IAGIVL Sbjct: 455 GIMSVEVGLLLVVLFMLARYKAFGVVANVSLGLNLVLLVAAMSLLGATLTLPGIAGIVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ ERIREE R V ++ GF RA+++I D+NIT L+ V+LF G G Sbjct: 515 LGMAVDANVLIFERIREELRAKMPVQQAIHTGFERAFTSIVDANITTLLVAVILFSIGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFA+T+ L IL SMFTAI + RAM+ I + +K I I Sbjct: 575 PVKGFAVTLSLGILTSMFTAIMVSRAMINLTIGGRPLKKIWI 616 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 95/251 (37%), Gaps = 4/251 (1%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + + + + + ++ L G A + Sbjct: 367 IEHKTRTRTVMEDGEEVEKREAYTERGIISLATIQSTLGNRFRITGLESASEAGDLALLL 426 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + +GP + + I +GI+ V + + +++++ R+K F + A +L Sbjct: 427 RSGSLAAPIYFAQERTIGPSLGAQNIAQGIMSVEVGLLLVVLFMLARYK-AFGVVANVSL 485 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 L++ + +L G L +A ++ +G +V+ V++++R+R+ ++ + + Sbjct: 486 GLNLVLLVAAMSLLGATLTLPGIAGIVLTLGMAVDANVLIFERIREELRA---KMPVQQA 542 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 I V ++ + + + G + FA+ ++ GI+ + ++I ++ ++ Sbjct: 543 IHTGFERAFTSIVDANITTLLVAVILFSIGTGPVKGFAVTLSLGILTSMFTAIMVSRAMI 602 Query: 821 LFIYDWRAKNA 831 R Sbjct: 603 NLTIGGRPLKK 613 >gi|239994271|ref|ZP_04714795.1| preprotein translocase subunit SecD [Alteromonas macleodii ATCC 27126] Length = 614 Score = 221 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 161/530 (30%), Positives = 283/530 (53%), Gaps = 38/530 (7%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 N P + + + + LGLDLRGG H ++EVD + + L+ R+ Sbjct: 99 YYVAMNLAPDTP--EWLEGLGGAPMKLGLDLRGGVHFLMEVDMTEVIAKSLEDAEGGFRT 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L++EGI ++Q+ + I ++F D + + + Sbjct: 157 SLREEGIRYRGVKQVDDHIDITFRDEDALDKAEFFLRN-----------QSRDLTFNQVD 205 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + + + +++ + ++ +A++Q++ IIR R++Q+G++E +Q+ G+ RI++QLPG QD Sbjct: 206 DLTLRAIFAESKLQEIRDNAVKQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDT 265 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254 +R +++L TA + F V N + G + + D G L+E ++ ++G H+ Sbjct: 266 ARAKEILNATATLEFRMVDQKNDIRDALNGRVPPGSQVIEDQQGIPQLLEKRIMLTGSHI 325 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------- 301 + + P V+IS D G + TR NIGKP+A V Sbjct: 326 ID-ANSGVDEYGLPNVNISLDSEGGNKMSRSTRGNIGKPMATVFIEYKSTGERNKDGKLV 384 Query: 302 -----VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + +A K QI+G + + A LA +LRAG+L + IVEER VG L Sbjct: 385 FEKHEQVISVATIRAQLGSKFQITGLDSPKEARDLALLLRAGALIAPIQIVEERTVGPSL 444 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415 G ++I G AI+ GL +++FM++ Y +G+VA+ ++ N+++ + ++S++ ATLTLP Sbjct: 445 GKENIELGMQAIMYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLP 504 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 +AGIVL +G+AVD+N+L+ ERIREE R +S ++ G+ A+STI D+NIT IA + Sbjct: 505 GMAGIVLTVGMAVDANVLIFERIREEIRDGRSPQHAIHQGYDSAFSTILDANITTFIAGL 564 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +LF G G ++GF+IT+ + I SMFTAI + R ++ + ++++ + I Sbjct: 565 ILFAVGTGPIKGFSITLMIGIATSMFTAILVTRVIVNAVWGGRRVEKLAI 614 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 89/205 (43%), Gaps = 6/205 (2%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + ++ I VGP + +E I G+ ++ A+L+++ I Sbjct: 411 DSPKEARDLALLLRAGALIAPIQIVEERTVGPSLGKENIELGMQAIMYGLAAVLVFMLIY 470 Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 +K F + A LI ++ +G ++ G L +A ++ +G +V+ V++++R+R+ Sbjct: 471 YK-AFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIRE 529 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++ S + I + + + ++ FI+ L + G I F+I + GI Sbjct: 530 EIRD---GRSPQHAIHQGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMIGIA 586 Query: 807 VAASSSIFIAAPIL-LFIYDWRAKN 830 + ++I + I+ R + Sbjct: 587 TSMFTAILVTRVIVNAVWGGRRVEK 611 >gi|325197820|gb|ADY93276.1| protein-export membrane protein SecD [Neisseria meningitidis G2136] Length = 617 Score = 221 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.1 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + L+ GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|296101530|ref|YP_003611676.1| preprotein translocase subunit SecF [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055989|gb|ADF60727.1| preprotein translocase subunit SecF [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 323 Score = 221 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 166/301 (55%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L I SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVWDFMRWDYWAFGISGLLLILSIVVMGVKGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 PVD+ +R +L+ + QNF ++ +VR+ + +Q ++V Sbjct: 65 PVDMDQMRQSLQKAGFEEPLLQNFGSSRDIMVRMPPVHDANGSQELGSKVVSVINETTSQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++++ I++L+Y+ RF+W A G + L D+ T Sbjct: 125 NATVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVVIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 MGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|332141985|ref|YP_004427723.1| preprotein translocase subunit SecD [Alteromonas macleodii str. 'Deep ecotype'] gi|327552007|gb|AEA98725.1| preprotein translocase subunit SecD [Alteromonas macleodii str. 'Deep ecotype'] Length = 614 Score = 221 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 162/530 (30%), Positives = 284/530 (53%), Gaps = 38/530 (7%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 N P + + + + LGLDLRGG H ++EVD + + L+ R+ Sbjct: 99 YYVAMNLAPDTP--EWLEGLGGAPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRT 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L++EGI ++Q+ + I ++F D + + + Sbjct: 157 SLREEGIRYRGVKQVDDHIDITFRDEDTLDKAEFFLRN-----------QSRDLTFNQID 205 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + + + +++ + ++ +A++Q++ IIR R++Q+G++E +Q+ G+ RI++QLPG QD Sbjct: 206 DLTLRAIFAESKLQEIRDNAVKQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDT 265 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254 +R +++L TA + F V N + G + + D G L+E ++ ++G H+ Sbjct: 266 ARAKEILNATATLEFRMVDQKNDIRDALNGRVPPGSQVIEDQQGIPQLLEKRIMLTGSHI 325 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------- 301 + + P V+IS D G + TR NIGKP+A V Sbjct: 326 ID-ANSGVDEYGLPNVNISLDSEGGNKMSRSTRGNIGKPMATVFIEYKSTGERNDDGKLV 384 Query: 302 -----VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + +A K QI+G + + A LA +LRAG+L + IVEER VG L Sbjct: 385 FEKHEQVISVATIRAQLGSKFQITGLDSPKEARDLALLLRAGALIAPIQIVEERTVGPSL 444 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415 G ++I G AI+ GL +++FM++ Y +G+VA+ ++ N+++ + ++S++ ATLTLP Sbjct: 445 GKENIELGMQAIIYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLP 504 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 +AGIVL +G+AVD+N+L+ ERIREE R+ +S ++ G+ A+STI D+NIT IA + Sbjct: 505 GMAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIHHGYDSAFSTILDANITTFIAGL 564 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +LF G G ++GF+IT+ + I SMFTAI + R ++ + K+++ + I Sbjct: 565 ILFAVGTGPIKGFSITLMIGIATSMFTAILVTRVIVNAVWGGKRVEKLAI 614 Score = 152 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 88/205 (42%), Gaps = 6/205 (2%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + ++ I VGP + +E I G+ +I A+L+++ I Sbjct: 411 DSPKEARDLALLLRAGALIAPIQIVEERTVGPSLGKENIELGMQAIIYGLAAVLVFMLIY 470 Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 +K F + A LI ++ +G ++ G L +A ++ +G +V+ V++++R+R+ Sbjct: 471 YK-AFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIRE 529 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++ S + I + + ++ FI+ L + G I F+I + GI Sbjct: 530 ELRE---GRSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMIGIA 586 Query: 807 VAASSSIFIAAPIL-LFIYDWRAKN 830 + ++I + I+ R + Sbjct: 587 TSMFTAILVTRVIVNAVWGGKRVEK 611 >gi|325141838|gb|EGC64283.1| protein-export membrane protein SecD [Neisseria meningitidis 961-5945] Length = 617 Score = 221 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 >gi|303250184|ref|ZP_07336386.1| preprotein translocase subunit SecF [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252705|ref|ZP_07534596.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651247|gb|EFL81401.1| preprotein translocase subunit SecF [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859737|gb|EFM91759.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 318 Score = 221 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 162/297 (54%), Gaps = 4/297 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM+ R+ G S++ + I + T G N+G+DF GG + ++P DLS VR Sbjct: 16 PYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLSKVR 75 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 LE G+ Q +K ++RL GD +++++V + + P +TI++ E Sbjct: 76 GLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQDL---DPAATIKSVE 132 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + +L+Y+ RF+ A+G I L D+ T+G F+ Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTIGIFSFLQ 192 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N ++ +++ID S+++TL R++ T Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKI-RRVTSQEVIDISLSQTLSRTLMT 251 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 S+ V + +GG I SF++ + GI SSI+IA + L + R + Sbjct: 252 SVTTLFVVAALFWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVK 308 >gi|209695856|ref|YP_002263786.1| preprotein translocase subunit SecF [Aliivibrio salmonicida LFI1238] gi|208009809|emb|CAQ80116.1| protein-export membrane protein SecF [Aliivibrio salmonicida LFI1238] Length = 316 Score = 221 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 160/299 (53%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR S+L + SI L T LN+G+DF GG + V +P Sbjct: 1 MFQIMKAEKTIDFMRWSKPAFFFSMLMIVASIATLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 L +R L++ GD + QNF ++ +VRLQ + G + +++ Sbjct: 61 QLEDIRGALQAKGFGDATVQNFGTARDVIVRLQPREG-MKGEQLGNQIISAIKEGTGDQV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S + +L Y+ IRF+W A GA+ L DI TLG Sbjct: 120 EMRRIEFVGPNVGGELAESGGLAILVSLLCILAYVSIRFQWRLAAGAVLALAHDIIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ IE +LT +AA+LT++GYS+ND +VV+DR+R+N ++++ SI +TL Sbjct: 180 IFSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGAP-EEIMNDSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + V GG++I FA+ + GI V SSI++A+ + L + R Sbjct: 239 SRTLITSATTLFVVIALFVQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297 >gi|119468099|ref|ZP_01611225.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Alteromonadales bacterium TW-7] gi|119448092|gb|EAW29356.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Alteromonadales bacterium TW-7] Length = 317 Score = 221 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 100/291 (34%), Positives = 167/291 (57%), Gaps = 2/291 (0%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 ++FM R +G S L + SI +FT GLN+G+DF GG + V ++P DL VR+ Sbjct: 9 RTLRFMSLRKVAMGFSTLLIVASIVSMFTKGLNFGLDFTGGTAVEVGFSQPADLKKVRNV 68 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L D S Q F ++ LVRL + D A+ + V + + ++ E V Sbjct: 69 LGENGFADASVQLFGSSQDILVRLAPRGSDVKAEV-IGNQVIDALKKADDSVVMRRIEFV 127 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + +L +G + ++ + I +LIY+ RF+W FA+GA+ L+ D+ TLG F++ G+E Sbjct: 128 GPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITLGLFSVLGLE 187 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AA+L +IGYS+ND +VV DR+R+N + ++ID S+ +TL R++ TS+ Sbjct: 188 FDLTILAAILAVIGYSLNDTIVVSDRIRENFRK-VRIDDTVEIIDISLTQTLNRTLVTSI 246 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + VWGG I FA + FG+ + SS+++A+ + L + + Sbjct: 247 TTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVALAMGVSKE 297 >gi|260425955|ref|ZP_05779934.1| protein-export membrane protein SecF [Citreicella sp. SE45] gi|260420447|gb|EEX13698.1| protein-export membrane protein SecF [Citreicella sp. SE45] Length = 331 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 103/306 (33%), Positives = 173/306 (56%), Gaps = 7/306 (2%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L+ D + F + +GIS + + ++ GLNYGIDF GG + + + Sbjct: 1 MRHLRLVKDETSFDFFKHWKLWLGISGVMLMLAMVSFGVRGLNYGIDFMGGTTIRTESAQ 60 Query: 588 PVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 PVD+ R +++L IGD + +VR+Q Q + + V+ Sbjct: 61 PVDVGAYRQAIDALGIGDSTISEVFDPSFGPEQNVAMVRIQAQDDEEAVTPETIAAVEAA 120 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + ++ P + E VGPK+S ELI+ + V ++ A+L+YIW+RF+W FA GA+ L+ Sbjct: 121 LQQVAPDIRFVSVESVGPKVSGELIQTAFLAVALAIGAVLVYIWLRFEWQFAAGAVLALV 180 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 D+ T+G F+ GI F+L+ +AA+LT++GYS+ND VVV+DR+R+N+ Y ++++ Sbjct: 181 HDVLLTIGVFSEVGIRFDLSIIAALLTIVGYSLNDTVVVFDRVRENLIKYKKR-PLKEVL 239 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + SINETL R++ TS+ +++ + GG VI F M +G+ V SSIF+A+ +LL Sbjct: 240 NISINETLSRTIMTSLTTLLALFALFALGGDVIRGFVFAMIWGVFVGTYSSIFVASALLL 299 Query: 822 FIYDWR 827 ++ R Sbjct: 300 WLGVKR 305 >gi|46143548|ref|ZP_00204504.1| COG0341: Preprotein translocase subunit SecF [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208540|ref|YP_001053765.1| preprotein translocase subunit SecF [Actinobacillus pleuropneumoniae L20] gi|307245979|ref|ZP_07528061.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307250321|ref|ZP_07532271.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307254957|ref|ZP_07536776.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259395|ref|ZP_07541120.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|126097332|gb|ABN74160.1| protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306852914|gb|EFM85137.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306857648|gb|EFM89754.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306862075|gb|EFM94050.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866331|gb|EFM98194.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 324 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 162/297 (54%), Gaps = 4/297 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM+ R+ G S++ + I + T G N+G+DF GG + ++P DLS VR Sbjct: 16 PYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLSKVR 75 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 LE G+ Q +K ++RL GD +++++V + + P +TI++ E Sbjct: 76 GLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQDL---DPAATIKSVE 132 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + +L+Y+ RF+ A+G I L D+ T+G F+ Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTIGIFSFLQ 192 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N I+ +++ID S+++TL R++ T Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKI-RRINSQEVIDISLSQTLSRTLMT 251 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 S+ V + +GG I SF++ + GI SSI+IA + L + R + Sbjct: 252 SVTTLFVVSALYWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVK 308 >gi|16272199|ref|NP_438409.1| preprotein translocase subunit SecF [Haemophilus influenzae Rd KW20] gi|260580877|ref|ZP_05848702.1| protein-export membrane protein SecF [Haemophilus influenzae RdAW] gi|319775890|ref|YP_004138378.1| protein-export membrane protein SecF [Haemophilus influenzae F3047] gi|319896574|ref|YP_004134767.1| protein-export membrane protein secf [Haemophilus influenzae F3031] gi|329123739|ref|ZP_08252299.1| protein-export membrane protein SecF [Haemophilus aegyptius ATCC 11116] gi|1173416|sp|P44590|SECF_HAEIN RecName: Full=Protein-export membrane protein secF gi|1573204|gb|AAC21907.1| protein-export membrane protein (secF) [Haemophilus influenzae Rd KW20] gi|260092500|gb|EEW76438.1| protein-export membrane protein SecF [Haemophilus influenzae RdAW] gi|317432076|emb|CBY80426.1| protein-export membrane protein SecF [Haemophilus influenzae F3031] gi|317450481|emb|CBY86698.1| protein-export membrane protein SecF [Haemophilus influenzae F3047] gi|327469938|gb|EGF15403.1| protein-export membrane protein SecF [Haemophilus aegyptius ATCC 11116] Length = 325 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 91/315 (28%), Positives = 157/315 (49%), Gaps = 5/315 (1%) Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573 +++ + +FM+ R G +S L + S+ + T G N+G+ Sbjct: 1 MMKLFTKDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGL 60 Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 DF GG+ ++ +L +RS L I Q ++ ++RL DS Sbjct: 61 DFTGGVVFDTHFSQSANLEQIRSKLHENGIESPIVQTTGSVQDVMIRLPASNNDST---- 116 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693 + E VK + + I++ E VGP + EL + + + + +LIY+ RF+W Sbjct: 117 IGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLG 176 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 G+I +L D+ TLG F+ IE +LT VAA+L+++GYS+ND +VV+DR+R+N + Sbjct: 177 FGSIASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-R 235 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 + D+ID S+ +TL R++ TS+ + V+ + +GG I +F++ + GI SSI Sbjct: 236 RLDTIDIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSI 295 Query: 814 FIAAPILLFIYDWRA 828 F+A I + R Sbjct: 296 FVAIAIAYDVGLRRE 310 >gi|260913706|ref|ZP_05920182.1| protein-export membrane protein SecF [Pasteurella dagmatis ATCC 43325] gi|260632245|gb|EEX50420.1| protein-export membrane protein SecF [Pasteurella dagmatis ATCC 43325] Length = 339 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 171/308 (55%), Gaps = 4/308 (1%) Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580 K + + I+FM+ R WG +S+ + S+ +++ G N+G+DF GG Sbjct: 20 KKNESATNENVEVKLPYRLIRFMKGRVWGYAVSVFAILLSLFFVYSKGFNWGLDFTGGTV 79 Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + + ++P +L VRS LE+ I QN ++ ++RL D+ V +M+ Sbjct: 80 IDMSFSQPAELDKVRSTLENNGIQSAIVQNSGSVRDIIIRLPAAVSDANLGNNVKQMMAN 139 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 I P T+ + E VGP + EL + I + + + +L YI +RF+W A+GAI +L Sbjct: 140 NI---DPNVTVHSIEFVGPNVGEELTQSAIYATLATLLMLLAYIGLRFEWRLAVGAIASL 196 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 D+ TLG F+LF IE +LT VAA+LT++GYS+ND +VV+DR+R+NM+ + D+ Sbjct: 197 AHDVIVTLGLFSLFQIEIDLTFVAAILTVVGYSLNDSIVVFDRVRENMRKIRRTE-VIDI 255 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ID S+++TL R++ TS I V+ + V+GG I SF++ + GI SSIF+A + Sbjct: 256 IDISLSQTLSRTLMTSATTVIVVVSLLVFGGPSIHSFSVALLIGIGFGTYSSIFVAIALA 315 Query: 821 LFIYDWRA 828 + R Sbjct: 316 YDLGLKRE 323 >gi|85058627|ref|YP_454329.1| preprotein translocase subunit SecF [Sodalis glossinidius str. 'morsitans'] gi|84779147|dbj|BAE73924.1| protein-export membrane protein SecF [Sodalis glossinidius str. 'morsitans'] Length = 323 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 87/296 (29%), Positives = 160/296 (54%), Gaps = 2/296 (0%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 L FMR + +S + I SI ++ G N+G+DF GG + + +P DL Sbjct: 11 LNYGRRVYDFMRWDYVAFSLSAILLIASIAIMAVKGFNWGLDFTGGTVIELNLEKPADLD 70 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 +R LE D QNF ++ +VR+ D + Q +++ ++++ Sbjct: 71 QMRGALEHAGFTDPLVQNFGSSRDVMVRMP-PVQDGLGQELGNKVLGVINQATGQNASVK 129 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 E VGP + +L + G + ++++ I +LIY+ RF+W A GA+ L D+ TL + Sbjct: 130 RVEFVGPSVGSDLAQDGGMALLVALICILIYVGFRFEWRLATGAVLALAHDVVITLCVLS 189 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 LF IE +LT +A+++++IGYS+ND +VV DR+R+N + ++ D+ + S+ +TL R+ Sbjct: 190 LFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGSAY-DIFNVSLTQTLSRT 248 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + TS + VL + ++GG+++ F+ + G+ + SSI++A+ + L + R Sbjct: 249 IMTSATTLMVVLMLLIFGGAMLRGFSTTLFIGVFIGTVSSIYVASALALKLGMKRE 304 >gi|221069818|ref|ZP_03545923.1| protein-export membrane protein SecD [Comamonas testosteroni KF-1] gi|220714841|gb|EED70209.1| protein-export membrane protein SecD [Comamonas testosteroni KF-1] Length = 632 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 170/507 (33%), Positives = 272/507 (53%), Gaps = 22/507 (4%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ R P + + LGLDLRGG H +L+VD + + Y+ +LRS ++ + I Sbjct: 109 NLVSRSPDWLTAIGAKPMYLGLDLRGGVHFMLQVDMAAALTKKAESYAGDLRSTMRDKNI 168 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + N +T+ D + + D T + Sbjct: 169 RHGGVSRDGNNVTIRVRDEATLTAARNLIADQF--------PDLAATSSPDGTGFRLVAS 220 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + + +V A++Q++ + RI+++G++E IQ+ G RI++QLPG QD ++ + +L Sbjct: 221 IKPEALRKVQEQALKQNIVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDIL 280 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGIHLNGATA 259 G TA + V + + G + D +G +V+ +V ++G +L A Sbjct: 281 GRTATLEVRMVDESAEARAAEMGSGPVPFGSEKYLDRNGQSIIVQKQVTLTGENLTDAQP 340 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSG 315 FD +T +P V+++ D GAR F +VTR+N+GK + G V+TAPVI I G Sbjct: 341 GFDSQTQEPTVNLTLDAKGARIFKDVTRENVGKRMAIILFEKGKGEVVTAPVIRGEIGGG 400 Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375 + QISG T A + +LRAGSL + I+EE +G LG+D+I +G ++V G+V I Sbjct: 401 RVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHSVVWGMVAI 460 Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435 FM + Y +G+ + ++ +NV+L LA+LS+L ATLTLP IA + L +G+A+DSN+L+N Sbjct: 461 AAFMCMYYMLFGVFSTIALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495 ERIREE R S ++ G+ A+ TI DSN+T LIA + L FG G VRGFA+ + Sbjct: 521 ERIREELRAGASPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGVVRGFAVVHCIG 580 Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKS 522 IL SMF+A+ R ++ KK Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGGKKKLK 607 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 86/212 (40%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I +GI V+ +A+ Sbjct: 402 VQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHSVVWGMVAIA 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + + F + + L +++ L ++ L +AA+ +G +++ V++ Sbjct: 462 AFMCMYY-MLFGVFSTIALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ S + I + +++ I+ L + +G V+ FA+ Sbjct: 521 ERIREELRA---GASPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGVVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++F + ++ Y + K + Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGGKKKLKSV 609 Score = 46.6 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + +G+L LPNF ++ ++V Sbjct: 3 RYPVWKYAIIVIALLVGVLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 ++ S L + S+ + F + D + L Sbjct: 38 SAKSTVKVDNAVLQKVESALSAASVKATSLSLEGTSVRARFDTPDEQLKAKDVIQKAL 95 >gi|160896287|ref|YP_001561869.1| preprotein translocase subunit SecD [Delftia acidovorans SPH-1] gi|160361871|gb|ABX33484.1| protein-export membrane protein SecD [Delftia acidovorans SPH-1] Length = 640 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 172/515 (33%), Positives = 276/515 (53%), Gaps = 21/515 (4%) Query: 19 LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78 I N + +S ++ +A+ + LGLDLRGG H +L+VD + ++ +LR Sbjct: 103 AYIVALNLVSRSP--QWLTAVGAKPMYLGLDLRGGVHFMLQVDMAAALTKKADSFAGDLR 160 Query: 79 SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT 138 + L+ + I + + N + + D + VT D Sbjct: 161 TSLRDKNIRHGGVSRNGNTVEIRVRDEAMLTAARNLVTDQF--------PDLAATSEPDG 212 Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198 ++ + + +V A++Q++ + RI+++G++E IQ+ G RI++QLPG QD Sbjct: 213 AGFKLLASIKPEALRKVQEQALKQNIVTLHNRINELGVAEPVIQQQGLDRIIVQLPGVQD 272 Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISG 251 ++ + +LG TA + V ++ +G G + D + +V+ +V ++G Sbjct: 273 TAKAKDILGRTATLEVRLVDESSEARGAELGSGPVPFGSERYLDRNAQAVIVQKQVVLTG 332 Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPV 307 +L A FD +T +P V++ D GAR F ++TR+N+GK + G V+TAPV Sbjct: 333 ENLTDAQPGFDSQTQEPTVNLVLDAKGARIFKDITRENVGKRMAIILFEKGKGEVVTAPV 392 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 I I G+ QISG T A A +LRAGSL + I+EE +G LG+D+I +G + Sbjct: 393 IRTEIGGGRVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHS 452 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427 +V GLV I FM V Y +G+++ ++ +NV+L LA+LS+L ATLTLP IA + L +G+A Sbjct: 453 VVWGLVAIAAFMCVYYMLFGVISTVALSVNVLLLLAILSMLQATLTLPGIAAMALALGVA 512 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 +DSN+L+NERIREE R S ++ G+ A+ TI DSN+T LIA + L FG G VRG Sbjct: 513 IDSNVLINERIREELRGGVSPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGPVRG 572 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FA+ + IL SMF+A+ R ++ +K Sbjct: 573 FAVVHCIGILTSMFSAVFFSRGLVNLWYGRRKKLK 607 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 86/212 (40%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I +GI V+ +A+ Sbjct: 402 VQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHSVVWGLVAIA 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + + F + + L +++ L ++ L +AA+ +G +++ V++ Sbjct: 462 AFMCVYY-MLFGVISTVALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ +S + I + +++ I+ L + +G + FA+ Sbjct: 521 ERIREELRG---GVSPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGPVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++F + ++ Y R K I Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGRRKKLKSI 609 Score = 46.6 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + +G+L LPNF ++ ++V Sbjct: 3 RYPVWKYAIIVIALLVGVLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + LK + + + F + D + L Sbjct: 38 SAKATVKVDNAVLHRVEEALKAADVKPDVLTIEGTSVRARFNTPDEQLKAKDVIQKAL 95 >gi|113869070|ref|YP_727559.1| preprotein translocase subunit SecF [Ralstonia eutropha H16] gi|113527846|emb|CAJ94191.1| preprotein translocase subunit SecF [Ralstonia eutropha H16] Length = 323 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 91/305 (29%), Positives = 157/305 (51%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS L ++ L+ GL+ I+F GG + V + D Sbjct: 1 MEFFRIRRDIPFMKHALVFNVISFLTFAAAVFFLWHKGLHLSIEFTGGTVMEVSYQQTAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L +R + L D+ QNF ++ ++RL Q G + E V + P Sbjct: 61 LEKIRGQVGKLGYTDVQVQNFGTSRDVMIRLPLQKGADGKPVTSAQQSEQVMASLQAASP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G++ ++ ++IY+ RF+W FA+ I + D+ Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLCVVAGIVIYLSFRFEWKFAVAGIIANLHDVVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AA+L ++GYSVN+ VV++DR+R+N + + +S ++ID +I Sbjct: 181 LGFFAYFQWEFSLSVLAAILAVLGYSVNESVVIFDRIRENFRKFRK-MSTHEIIDNAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + VL M +GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTIITHGSTQMMVLSMFFFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|157825967|ref|YP_001493687.1| preprotein translocase subunit SecD [Rickettsia akari str. Hartford] gi|157799925|gb|ABV75179.1| preprotein translocase subunit SecD [Rickettsia akari str. Hartford] Length = 518 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 195/532 (36%), Positives = 316/532 (59%), Gaps = 26/532 (4%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+N W + L + ++ ALPNF+ + +P + ++LGLDLRGG+HL+L+ Sbjct: 1 MQNLPKWKIFLSIICTVFAVICALPNFMHINS-----KFLPHDSVNLGLDLRGGAHLLLD 55 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 VD D ++N ++ +D LR +K+ IG ++ QN I L + + + Sbjct: 56 VDFDTYLNDLMENLADTLRKNFRKDKIGYKNLLVRQNNIQLEVRSPEELKPLKKIINK-- 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 ++ + +I + S++ ++ +++ ++QS+EI+R R+D G E Sbjct: 114 ----------IDPEIITDVNKNKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233 T+Q+ G IL+Q+PGE++PS L+ LLG TAK++FH V N + + + G + Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNLLGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223 Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +S G Y+V K + G + + + VV SF+ +G++ F E+T++NIG Sbjct: 224 GANESHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNIG 283 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K LA+VLD ++L+AP IN AI G I+GNFT+E+A LA +LRAGSLP L I+EER+ Sbjct: 284 KRLAIVLDNKLLSAPTINGAIIGGSGIITGNFTVESANELAILLRAGSLPAPLKIIEERS 343 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 +G +LG+DSI G A + G + + +FM+ YG GL A+ ++ L ++ LALLSL AT Sbjct: 344 IGPNLGADSIESGKKAWLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LT+P IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI DSN+T L Sbjct: 404 LTMPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFEFAFATILDSNLTTL 463 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 I +L+ FG GA++GFA+ + + I+ SMF+A+ I + ++ ++Y K K + Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAMIITKLLIDIWVKYFKPKKL 515 Score = 125 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 78/178 (43%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I IA+ I++ + L A L L + L +LF Sbjct: 343 SIGPNLGADSIESGKKAWLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G +V+ V++Y+R+++ + +S I + + Sbjct: 402 ATLTMPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFEFAFATILDS 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S++ I +L+ I+ K ++ Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAMIITK-LLIDIWVKYFKPKKL 515 >gi|83746738|ref|ZP_00943786.1| Protein translocase subunit secD [Ralstonia solanacearum UW551] gi|207744283|ref|YP_002260675.1| protein-export membrane protein secd [Ralstonia solanacearum IPO1609] gi|83726507|gb|EAP73637.1| Protein translocase subunit secD [Ralstonia solanacearum UW551] gi|206595688|emb|CAQ62615.1| protein-export membrane protein secd [Ralstonia solanacearum IPO1609] Length = 627 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 169/515 (32%), Positives = 274/515 (53%), Gaps = 26/515 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL P +L + LGLDLRGG H +L+VD + + L Sbjct: 109 IVALNLLSGSPRWLTAIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ +G+ + + I++ F++ + + + + Sbjct: 160 AGDIRTQLRDKGVRHNGIERSGTTISIKFSNPDEADRARGLLADSTR--------ELAFA 211 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 T ++ + + +V +A++Q++ + R++++G+SE IQ+ G RI++QL Sbjct: 212 TDKTADGVTLTGTFTAAAMKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248 PG QD ++ + ++G TA + PN + G G L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARMADPNATGIPRLTDPVPLGDELFTQGRGAPVLLQKQVI 331 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G +N A+A FD H P VDI+ D G R +++RDNIGK +A+VL + + Sbjct: 332 FTGDRINSASAGFDQN-HNPSVDITLDGQGGRMLRDISRDNIGKRMAIVLFEKGKGEVLT 390 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G ++E+A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 391 VATIQSELGSRFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 450 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + G I +FM++ Y +G + S+ +NV L +A+LS+L ATLTLP IA I L +G Sbjct: 451 DSAAYGFAAISVFMVLYYMLFGAFSVVSLGVNVFLLIAILSMLQATLTLPGIAAIALALG 510 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NERIREE R S ++ GF RA++TI DSN+T LIA + L FG G V Sbjct: 511 MAIDANVLINERIREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFA+ L IL SMF+A+ R+++ KK Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605 Score = 147 bits (369), Expect = 9e-33, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 78/181 (43%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG A+ +++ + + F ++ +L +++ + Sbjct: 429 MEIIEERTIGPSLGADNIKKGFDSAAYGFAAISVFMVLYY-MLFGAFSVVSLGVNVFLLI 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ S + I Sbjct: 488 AILSMLQATLTLPGIAAIALALGMAIDANVLINERIREELR---NGASPQMAIAAGFERA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FA+ GI+ + S++F ++ Y + Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604 Query: 829 K 829 K Sbjct: 605 K 605 Score = 37.7 bits (85), Expect = 9.1, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 15/33 (45%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34 R W ++ + IG L LPNF ++ + Sbjct: 3 RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQ 35 >gi|319409996|emb|CBY90325.1| preprotein translocase SecD subunit [Neisseria meningitidis WUE 2594] Length = 617 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 >gi|152996658|ref|YP_001341493.1| preprotein translocase subunit SecD [Marinomonas sp. MWYL1] gi|150837582|gb|ABR71558.1| protein-export membrane protein SecD [Marinomonas sp. MWYL1] Length = 616 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 165/538 (30%), Positives = 283/538 (52%), Gaps = 38/538 (7%) Query: 14 ICCIGL---LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70 + L + N +P + + SA+ LGLDLRGG H +LEVD + L Sbjct: 91 VVAAALGDDYVTALNLVPTTP--EWLSALGAGPAKLGLDLRGGVHFLLEVDTPAALKQRL 148 Query: 71 QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 ++ + E+++ L+K+ + S+ +++ F + D Sbjct: 149 EVSASEMKAALRKDRVRYRSVDIEDGVLSVRFLQQPDLATAETLLKKDFSEYRYATRQDG 208 Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 + + ++ ++ S+A++Q++ +R R++++G++E +QR GS+RI+ Sbjct: 209 SDFY--------LDVSFTEAAKKEIESYALQQNLTTLRNRVNELGVAEPLVQRQGSNRIV 260 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 ++LPG QD + ++++G TA + FH KG RD G +E + I+ Sbjct: 261 VELPGVQDTAAAKRIIGATANLEFHLEA-GLEDKGADIETLSFRDGSGRTARLERDLIIT 319 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI-- 308 G ++ A+++FD +P V+I+ D G ++ +VTR +G+ +AVV + + Sbjct: 320 GDSVSDASSSFDENG-RPQVNINLDAKGGKQMSKVTRSAVGRNMAVVFIEHKSRSRFVEK 378 Query: 309 ---------------------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 Q +I+G + + LA +LRAG+L + V Sbjct: 379 DGKMEEVRRSYSEKGIISLATIQTTLGNSFRITGLDSPRESSELALLLRAGALAAPIYFV 438 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER +G LG+++I G + GL+++++FM++ Y +GL A+ S+ LN++L +A +SL Sbjct: 439 EERTIGPSLGAENIKLGVSSAQIGLLVVMVFMLLYYKVFGLFANISLALNIVLLMACMSL 498 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 L ATLTLP IAGIVL +G+AVD+N+L+ RI+EE S ++ GF+RA++TIFD+N Sbjct: 499 LSATLTLPGIAGIVLTMGMAVDANVLIFSRIKEELASGVSNQQAIHSGFNRAFTTIFDAN 558 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IT L+ V+LF G G V+GFA+T+ L IL SMFTAI + RA + + +K K + I Sbjct: 559 ITTLLVAVILFAVGTGPVKGFAVTLSLGILTSMFTAIVVTRAQVNLVYGGRKNKKLYI 616 Score = 154 bits (387), Expect = 8e-35, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 99/248 (39%), Gaps = 10/248 (4%) Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 + + VR + I ++ +F + P +S +L Sbjct: 377 EKDGKMEEVRRSYSEKGIISLATIQTTLGNSFRITGLDSPRESSELALLLRAGALAAP-- 434 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 +GP + E I+ G+ I + +++++ + +K F L A +L L+I Sbjct: 435 ---IYFVEERTIGPSLGAENIKLGVSSAQIGLLVVMVFMLLYYKV-FGLFANISLALNIV 490 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 + +L L +A ++ +G +V+ V+++ R+++ + + +S + I Sbjct: 491 LLMACMSLLSATLTLPGIAGIVLTMGMAVDANVLIFSRIKEELA---SGVSNQQAIHSGF 547 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 N ++ + + + G + FA+ ++ GI+ + ++I + + +Y Sbjct: 548 NRAFTTIFDANITTLLVAVILFAVGTGPVKGFAVTLSLGILTSMFTAIVVTRAQVNLVYG 607 Query: 826 WRAKNARI 833 R KN ++ Sbjct: 608 GR-KNKKL 614 >gi|254674008|emb|CBA09792.1| protein-export membrane protein SecD [Neisseria meningitidis alpha275] gi|325202598|gb|ADY98052.1| protein-export membrane protein SecD [Neisseria meningitidis M01-240149] Length = 617 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.1 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + L+ GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|238755136|ref|ZP_04616483.1| Protein-export membrane protein secF [Yersinia ruckeri ATCC 29473] gi|238706696|gb|EEP99066.1| Protein-export membrane protein secF [Yersinia ruckeri ATCC 29473] Length = 322 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 163/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR GIS+L + SI ++ G N+G+DF GG + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDNVAFGISLLLLVASIAIISVKGFNWGLDFTGGTVIEINLEN 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R LE QNF ++ +VR+ G + Q ++ + Sbjct: 65 PADLDQMRDTLEKAGFESPILQNFGSTRDVMVRMPPATG-AAGQELGNRVISVINESVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++++ + +L+Y+ RF+W ALGA+ L D+ T Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGGMALLVALLCILVYVGFRFEWRLALGAVIALAHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF +E +LT +A+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGILSLFQVEVDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|116748679|ref|YP_845366.1| protein-export membrane protein SecD [Syntrophobacter fumaroxidans MPOB] gi|116697743|gb|ABK16931.1| protein-export membrane protein SecD [Syntrophobacter fumaroxidans MPOB] Length = 533 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 193/540 (35%), Positives = 303/540 (56%), Gaps = 22/540 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M N W +L ++ +G++ +P F+ + +PK++I LGLDL+GG HL+LEV Sbjct: 1 MSNLKWRALLVVVVLIVGVVYLVPTFVSTLP-PGWSKFLPKDKIRLGLDLQGGMHLILEV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119 + D V+ +++L+ +KE I + + I + + + I V Sbjct: 60 EADQAVSNTATRLAEDLKDAFRKEKIAFNKIDKTGKWDIEVQLPGTEQQSQIGPLVEKEF 119 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 + + + ++ + + + +++V AI Q +E IR RIDQ G+SE Sbjct: 120 PTLKWVSAETQPEGTV------KVMLTVHEKEVERVQKAAIAQGLETIRNRIDQFGVSEP 173 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF------- 232 I+ G RIL+QLPG QDP R +L+G TA++ F V S + G Sbjct: 174 DIRPQGEDRILVQLPGIQDPQRAVELIGKTAQLEFKLVAEGVSPQDVKSGKAPAGTKIYP 233 Query: 233 -------LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 R +Q ++ D+ +SG ++ A D + V + FD GA+ F ++ Sbjct: 234 MKHTDRTTRQRTESQIVLNDRTLMSGEYITNAQVEIDRQHSSSYVALDFDAQGAKLFEKI 293 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 T N+ K LA+VLDG V +APVI + I GKA I+G+FT + A LA +LRAG+LP + Sbjct: 294 TEANVKKQLAIVLDGVVYSAPVIQETIGGGKATITGSFTDQEARDLAIVLRAGALPAPVK 353 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 I+E+R VG LG+DSI KG A + G + +LFM++ Y G+VAD ++ LNV+L LA + Sbjct: 354 ILEQRTVGPSLGADSINKGVLASIVGGIGTILFMLIYYRFGGVVADLALALNVLLVLAGM 413 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 + G TLTLP IAGI L IG+AVD+N+L+ ERIREE R ++ +L+ G+ RA TI D Sbjct: 414 AAFGFTLTLPGIAGIALTIGMAVDANVLIYERIREELRLGKTPRAALETGYDRATLTILD 473 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +N+T +IA +VL FG G VRGFA+T+ + + +MFTAI + R + +++ +++K++ I Sbjct: 474 ANVTTIIAALVLLQFGTGPVRGFAVTLTVGLAANMFTAIFVTRVIFDYLLVQRRIKTLSI 533 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 5/177 (2%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VGP + + I KG++ I+ I ++++ I +++ + + + + G A Sbjct: 357 QRTVGPSLGADSINKGVLASIVGGIGTILFMLIYYRFGGVVADLALALNVLLVLAG-MAA 415 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 FG L +A + IG +V+ V++Y+R+R+ ++L + R ++ + + Sbjct: 416 FGFTLTLPGIAGIALTIGMAVDANVLIYERIREELRL---GKTPRAALETGYDRATLTIL 472 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAK 829 ++ I+ L + +G + FA+ + G+ ++IF+ I + R K Sbjct: 473 DANVTTIIAALVLLQFGTGPVRGFAVTLTVGLAANMFTAIFVTRVIFDYLLVQRRIK 529 >gi|56312248|emb|CAI06893.1| protein-export membrane protein SecD [Aromatoleum aromaticum EbN1] Length = 635 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 184/517 (35%), Positives = 284/517 (54%), Gaps = 26/517 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL A P +L + LGLDLRGG H +LEVD + L Sbjct: 119 IVALNLLSASPTWLTAIHA---------LPMYLGLDLRGGVHFLLEVDMPGAITKRLDAT 169 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + +LR+ L+ + + + + N + L F D+ +E + + + + D Sbjct: 170 AGDLRTLLRDKDVRHAGIVREGNTVQLRFRDAAQREAARNAILNSTRDLQLVDRDDG--- 226 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 +T+ ++ L+ + AI+Q++ + RI+++G++E IQ+ G++RI++QL Sbjct: 227 ----STDLKLIATLTPVAQQTIRDFAIKQNITTLHNRINELGVAEPVIQQQGANRIVVQL 282 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKV 247 PG QD ++ + +LG TA + V + FG + G+ LV +V Sbjct: 283 PGVQDVAKAKDILGRTATLEVRMVDDSPGALEAALAGNVPFGTELYTERGGSPLLVRSQV 342 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVL 303 ++G L A FD +T++P V ++ D G+R F +VTR+N+GK + G V+ Sbjct: 343 VLTGDRLTDAQPGFDGQTNEPAVHLTLDAAGSRIFRDVTRENVGKRMAILLIEKGKGEVV 402 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 TAPVI I G+ QISG+ T A +A +LRAGSL + I+EER VG LG+D+I K Sbjct: 403 TAPVIRSEIGGGRVQISGSMTTTEANDVALLLRAGSLAAPMEIIEERTVGPSLGADNIAK 462 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G + + G + I +FMI Y +GL++ ++ N++L +ALLSLL ATLTLP IA + L Sbjct: 463 GFNSTLWGFIAIAVFMIAYYMLFGLISAIALAANLLLLVALLSLLQATLTLPGIAAMALT 522 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+A+D+N+L+NERIREE R S ++ G+ RA+ TI DSNIT LIA + L FG G Sbjct: 523 LGMAIDANVLINERIREELRNGVSPQAAIHTGYDRAFDTILDSNITTLIAGIALLVFGSG 582 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 VRGFA+ L IL SMF+AI I R ++ I ++ Sbjct: 583 PVRGFAVVHCLGILTSMFSAILISRMLVNLIYGRRRK 619 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 85/208 (40%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I VGP + + I KG + IA+ Sbjct: 416 VQISGSMTTTEANDVALLLRAGSLAAPMEIIEERTVGPSLGADNIAKGFNSTLWGFIAIA 475 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + F L + L ++ + +L L +AA+ +G +++ V++ Sbjct: 476 VFMIAYY-MLFGLISAIALAANLLLLVALLSLLQATLTLPGIAAMALTLGMAIDANVLIN 534 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ +S + I + + +++ I+ + + V+G + FA+ Sbjct: 535 ERIREELR---NGVSPQAAIHTGYDRAFDTILDSNITTLIAGIALLVFGSGPVRGFAVVH 591 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + S+I I+ ++ IY R K Sbjct: 592 CLGILTSMFSAILISRMLVNLIYGRRRK 619 Score = 51.2 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 25/120 (20%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W IL ++ GL+ LPNF + ++V Sbjct: 17 RYPLWKNILIGLVLFFGLIYTLPNFYGEVPA-------------------------VQVS 51 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + L+ + + N I + + + D + L Sbjct: 52 SGKATLKLDPALVAPIEQTLRDAEVPYDGLFVDGNSIRVRLGSTEDQLRAKDSIEKRLNP 111 >gi|319957740|ref|YP_004169003.1| protein translocase subunit secf [Nitratifractor salsuginis DSM 16511] gi|319420144|gb|ADV47254.1| protein translocase subunit secF [Nitratifractor salsuginis DSM 16511] Length = 323 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 95/294 (32%), Positives = 164/294 (55%), Gaps = 3/294 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM A +S++ + S L+FT G NYGIDF GG + + Sbjct: 1 MELFRYKKPIDFMGASRKFGIVSLILVLLSWGLIFTKGFNYGIDFAGGTLIQLKYEGEAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R + + + + G KN V ++ + V + V++ + + Sbjct: 61 LKKIREAMAKSEAFKDATVTYFGSKN-EVVIRTKTSSKSVGKDVGDEVRQMLKDTGKF-V 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ ++VGPKI EL KG++ ++++ + +LIY+ +RF+W FAL ++ L+ D++ +G Sbjct: 119 VRRVDMVGPKIGNELKEKGLMAMVLAILGILIYVSVRFEWRFALASVLALVHDVSIAMGA 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF +E NL +AA+LTL+GYS+ND ++V+DR+R+ ++ +I++SI TL Sbjct: 179 IILFNVEVNLDILAALLTLLGYSLNDTIIVFDRIREGLQKI-KDPDLAGIINESITRTLS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R+V TS+ F VL + ++GG +I F+ M GI+V SSIFIA+P+L+++ Sbjct: 238 RTVLTSLTTFFVVLSLFLFGGEIIYGFSFTMLVGIIVGTYSSIFIASPLLMWLG 291 >gi|254804490|ref|YP_003082711.1| protein-export membrane protein SecD [Neisseria meningitidis alpha14] gi|254668032|emb|CBA04434.1| protein-export membrane protein SecD [Neisseria meningitidis alpha14] Length = 617 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 >gi|325131940|gb|EGC54640.1| protein-export membrane protein SecD [Neisseria meningitidis M6190] gi|325137611|gb|EGC60188.1| protein-export membrane protein SecD [Neisseria meningitidis ES14902] Length = 617 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 82/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ +++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRV---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.1 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + L+ GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|317492967|ref|ZP_07951391.1| protein-export membrane protein SecF [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919089|gb|EFV40424.1| protein-export membrane protein SecF [Enterobacteriaceae bacterium 9_2_54FAA] Length = 323 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 87/297 (29%), Positives = 164/297 (55%), Gaps = 1/297 (0%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L FMR +W GIS + SI ++ + N G+DF GG + V +P D+ Sbjct: 9 QLNYGRRVYDFMRWDYWAFGISGFLLLLSIIIIGVNKFNLGLDFTGGTVIEVSLEKPADM 68 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 ++R L+ D QNF ++ +VR+ ++ + +++ +T+ Sbjct: 69 DMMRDALKKAGFVDPLLQNFGSSRDIVVRMPPATSEASGEALGSKVISVINEATSQNATV 128 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + E VGP + +L + G + ++++ IA+LIY+ +RF+W A G + +L+ D+ TLG Sbjct: 129 KRIEFVGPSVGEDLAQHGAMALLVALIAILIYVGVRFEWRLAAGVVISLLHDVIITLGVL 188 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ +TL R Sbjct: 189 SLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHR 247 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ TS + +L + ++GG ++ F++ M G+ + SSI++A+ + L + R Sbjct: 248 TLITSGTTLMVILMLYLFGGPMLKGFSLTMLIGVSIGTISSIYVASALALKLGMKRE 304 >gi|238765179|ref|ZP_04626111.1| Protein-export membrane protein secF [Yersinia kristensenii ATCC 33638] gi|238696613|gb|EEP89398.1| Protein-export membrane protein secF [Yersinia kristensenii ATCC 33638] Length = 322 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 166/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR GIS+L + SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDNVAFGISLLLLVASIAVISVKGFNWGLDFTGGTVIEINLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R LE+ QNF ++ ++R+ G Q +++ + Sbjct: 65 PADLDQLRDTLETAGFESPILQNFGSSRDVMIRMPPATGT-AGQELGNKVISIINESVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + ++++ +++L+Y+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALLSILVYVGFRFEWRLALGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|264680870|ref|YP_003280780.1| protein-export membrane protein SecD [Comamonas testosteroni CNB-2] gi|262211386|gb|ACY35484.1| protein-export membrane protein SecD [Comamonas testosteroni CNB-2] Length = 632 Score = 220 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 170/507 (33%), Positives = 274/507 (54%), Gaps = 22/507 (4%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ R P + + LGLDLRGG H +L+VD + + Y+ +LRS ++ + I Sbjct: 109 NLVSRSPDWLTAIGAKPMYLGLDLRGGVHFMLQVDMAAALTKKAESYAGDLRSSMRDKNI 168 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + N +T+ D + + D + T ++ Sbjct: 169 RHGGVSRDGNNVTIRVRDEATLTAARNLIADQF--------PDLAATSMPDGTGFKLVAS 220 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + + +V A++Q++ + RI+++G++E IQ+ G RI++QLPG QD ++ + +L Sbjct: 221 IKPEALRKVQEQALKQNIVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDIL 280 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGIHLNGATA 259 G TA + V + + G + D +G +V+ +V ++G +L A Sbjct: 281 GRTATLEVRMVDESAEARAAEMGSGPVPFGSEKYLDRNGQGIIVQKQVTLTGENLTDAQP 340 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSG 315 FD +T +P V+++ D GAR F +VTR+N+GK + G V+TAPVI I G Sbjct: 341 GFDSQTQEPTVNLTLDAKGARIFKDVTRENVGKRMAIILFEKGKGEVVTAPVIRGEIGGG 400 Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375 + QISG T A + +LRAGSL + I+EE +G LG+D+I +G ++V G+V I Sbjct: 401 RVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHSVVWGMVAI 460 Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435 FM + Y +G+ + ++ +NV+L LA+LS+L ATLTLP IA + L +G+A+DSN+L+N Sbjct: 461 AAFMCMYYMLFGVFSTIALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495 ERIREE R S ++ G+ A+ TI DSN+T LIA + L FG G VRGFA+ + Sbjct: 521 ERIREELRAGASPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGVVRGFAVVHCIG 580 Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKS 522 IL SMF+A+ R ++ KK Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGGKKKLK 607 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 86/212 (40%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I +GI V+ +A+ Sbjct: 402 VQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHSVVWGMVAIA 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + + F + + L +++ L ++ L +AA+ +G +++ V++ Sbjct: 462 AFMCMYY-MLFGVFSTIALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ S + I + +++ I+ L + +G V+ FA+ Sbjct: 521 ERIREELRA---GASPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGVVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++F + ++ Y + K + Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGGKKKLKSV 609 Score = 46.2 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 30/118 (25%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + +G+L LPNF ++ ++V Sbjct: 3 RYPVWKYAIIVIALLVGVLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 ++ S L + SM + F + D + L Sbjct: 38 SAKSTVKVDNAVLQKVESALSAASVKATSMSLEGTSVRARFDTPDEQLKAKDVIQKAL 95 >gi|226954463|ref|ZP_03824927.1| preprotein translocase subunit SecD [Acinetobacter sp. ATCC 27244] gi|294651479|ref|ZP_06728792.1| preprotein translocase subunit SecD [Acinetobacter haemolyticus ATCC 19194] gi|226834812|gb|EEH67195.1| preprotein translocase subunit SecD [Acinetobacter sp. ATCC 27244] gi|292822629|gb|EFF81519.1| preprotein translocase subunit SecD [Acinetobacter haemolyticus ATCC 19194] Length = 633 Score = 220 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 159/542 (29%), Positives = 276/542 (50%), Gaps = 49/542 (9%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 + N P + + + + + LGLDLRGG H +LEVD D ++ ++ + +LR Sbjct: 98 YVIALNLAPTTPI--WLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRR 155 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 + I ++ N IT+ FA + ++ AD + + + T T Sbjct: 156 QFRDNKIKFNNLALNNNTITIQFASNADRDAAADFLRRNGNEF--------NQQSIATAT 207 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + + + ++ S+A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD Sbjct: 208 GATLRLNYTDARRQEIQSYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGIQDT 267 Query: 200 SRLRQLLGTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVED 245 + +++LG TA + F V +N F G L+ Sbjct: 268 AEAKRVLGRTANLEFRLVADSNDQYIDPYTRKYNGQPVPPGTEVFAFESLDSGRDLLLNR 327 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----------- 294 ++G + A++ F T V+I+ D G + + TR+ +GK + Sbjct: 328 NRILTGERVQNASSGFSQDTGGAEVNITLDSAGGKLMADGTRNAVGKRMAVLFIENKQRI 387 Query: 295 --------------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340 V+ QA+ + +I+G + + A LA MLRAG+L Sbjct: 388 SYVTDPETGAQTEVRTPYTESVVINAATIQAVLGSQFRITGLDSPQEAAELALMLRAGAL 447 Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 + VEER VG LG ++I KG + + G +L+ ++M+V + +GL+A+F++ N+ + Sbjct: 448 AAPMYFVEERVVGPSLGKENIEKGVQSTIIGFILVAIWMVVFFRLFGLIANFALIFNLAM 507 Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460 L ++S LGA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE R S ++ G+ RAY Sbjct: 508 ILTVMSWLGASLTLPGIAGIVITIGMAVDANVLICERIREEMRWGASPKQAIVAGYDRAY 567 Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 +TI DSN+T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I ++ Sbjct: 568 NTIVDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLIYGKRRN 627 Query: 521 KS 522 + Sbjct: 628 LT 629 Score = 159 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 94/250 (37%), Gaps = 4/250 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + D + N + L G Q + + Sbjct: 386 RISYVTDPETGAQTEVRTPYTESVVINAATIQAVLGSQFRITGLDSPQEAAELALMLRAG 445 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +VGP + +E I KG+ II I + I++ + F+ F L A LI + Sbjct: 446 ALAAPMYFVEERVVGPSLGKENIEKGVQSTIIGFILVAIWMVVFFRL-FGLIANFALIFN 504 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + L + G L +A ++ IG +V+ V++ +R+R+ M+ S + I Sbjct: 505 LAMILTVMSWLGASLTLPGIAGIVITIGMAVDANVLICERIREEMRW---GASPKQAIVA 561 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + V +++ F+ + G I FA+ + GIV + ++I + I+ I Sbjct: 562 GYDRAYNTIVDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLI 621 Query: 824 YDWRAKNARI 833 Y R ++ Sbjct: 622 YGKRRNLTKL 631 Score = 41.6 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44 MR W +L ++ I L ALP+ P + A +I Sbjct: 1 MRYPAWKYLLILVVFVISTLYALPSLYPDEPAVQISGAKAGTQI 44 >gi|40063325|gb|AAR38143.1| protein-export membrane protein SecF [uncultured marine bacterium 578] Length = 308 Score = 220 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 93/289 (32%), Positives = 157/289 (54%), Gaps = 7/289 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I F+ R + + S + + SI + GL +GIDF GG + + + DL +RS L Sbjct: 11 INFVGNRKYALIFSAILLVVSIASIGFQGLKFGIDFTGGTLIELGYEKTADLEDIRSKLT 70 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 S + Q F + L++L ++ I + ++ E VGP Sbjct: 71 SANYKGTNVQYFGSDTEVLIQL------EPQAASSAKLSASIIRMLGDDLDVRRVEFVGP 124 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL G + ++ + I +LIY+ RF++ FALG+I L+ D+ T+G F+L IEF+ Sbjct: 125 KVGEELTNDGGLAMLYALIGILIYVAFRFEYRFALGSIAALVHDVIITIGIFSLLQIEFD 184 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AA+L +IGYS+ND +VV+DR+R+N S +++ ++N+TL R++ TS+ Sbjct: 185 LTVLAAILAVIGYSLNDTIVVFDRIRENFLSTRHIES-GPIVNDALNQTLTRTLMTSLTT 243 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 I +L + GG VI SFA + G+V+ SSI++A+ ++L + + Sbjct: 244 LIVLLALFYLGGEVIHSFAGALIIGVVIGTYSSIYVASSMILALGISKE 292 >gi|325144006|gb|EGC66316.1| protein-export membrane protein SecD [Neisseria meningitidis M01-240013] gi|325206544|gb|ADZ01997.1| protein-export membrane protein SecD [Neisseria meningitidis M04-240196] Length = 617 Score = 220 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 >gi|296536038|ref|ZP_06898177.1| protein-export membrane protein SecD [Roseomonas cervicalis ATCC 49957] gi|296263644|gb|EFH10130.1| protein-export membrane protein SecD [Roseomonas cervicalis ATCC 49957] Length = 528 Score = 220 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 209/525 (39%), Positives = 318/525 (60%), Gaps = 8/525 (1%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W V + +G+L++LPN +P+ PS +P ISLGLDLRGGS+L+LEVD + Sbjct: 6 RWKVAAILGVVLLGVLLSLPNLVPR---SAMPSWLPARTISLGLDLRGGSYLLLEVDLNA 62 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQI--QNKITLSFADSRFKENIADKVTLFLQGV 122 V L+ +D R+ L++ +G +++ +++L D + + V Sbjct: 63 VVRERLESLADGARTRLRQANVGYLNLQADAANERLSLRLRDPGQTQAALAALRELASPV 122 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + I+ LS+ + S A+EQS+EI+R+RID+ G++E+ I Sbjct: 123 PVGGGATAPDVEFASQPDGTITARLSEPALRARASGAVEQSIEIVRRRIDETGVAEALIA 182 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR---DSDGN 239 R GS RIL+QLPG +DP+R+++LLG TA+M+F V + + + G Sbjct: 183 RQGSSRILVQLPGVEDPNRIKELLGRTARMTFRLVDETANPAAALPPPGVEFLEGEQGGT 242 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 ++ V ++E+ G +L+ A A D ++ + VV SFD +G RRF E+TR N+ +P A+VLD Sbjct: 243 RFAVRRRIEVDGANLSDARAAQDGRSGEWVVSFSFDSVGTRRFAEITRQNVNRPFAIVLD 302 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 +V+TAPVI + I G+ QISGNFT ++A LA +LRAG+LP L +VEER VG +LG+D Sbjct: 303 NKVITAPVIREPITGGRGQISGNFTAQSANDLAVLLRAGALPAPLTVVEERTVGPELGAD 362 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I G ++ G +V +M YG +G A+ ++ +N+ L + LS+LGATLTLP IAG Sbjct: 363 AIRAGLASLAVGAAFVVAYMGFAYGLFGWFANLALLVNLTLLMGALSVLGATLTLPGIAG 422 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G AVD+NIL+NERIREE R +S +L+ GF++A TI DSN+T LIA L+ Sbjct: 423 IVLTLGTAVDANILINERIREEVRAGRSPIQALEAGFTKASGTILDSNLTNLIAMACLYG 482 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 FG G VRGFA+T+ + + SM++A +VR MM R ++ K++ Sbjct: 483 FGSGPVRGFAVTVAIGTIASMWSATILVRLMMAGWYRSRRPKALP 527 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 82/174 (47%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ + IR G+ + + A ++ Y+ + F A L++++T +G ++ G Sbjct: 356 GPELGADAIRAGLASLAVGAAFVVAYMGFAYGL-FGWFANLALLVNLTLLMGALSVLGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ +++ +R+R+ ++ S ++ + G + +++ Sbjct: 415 LTLPGIAGIVLTLGTAVDANILINERIREEVRA---GRSPIQALEAGFTKASGTILDSNL 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I++ + +G + FA+ +A G + + S+ + ++ Y R A Sbjct: 472 TNLIAMACLYGFGSGPVRGFAVTVAIGTIASMWSATILVRLMMAGWYRSRRPKA 525 >gi|218767743|ref|YP_002342255.1| preprotein translocase subunit SecD [Neisseria meningitidis Z2491] gi|121051751|emb|CAM08055.1| putative protein-export membrane protein [Neisseria meningitidis Z2491] Length = 618 Score = 220 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 332 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597 >gi|311280703|ref|YP_003942934.1| protein-export membrane protein SecF [Enterobacter cloacae SCF1] gi|308749898|gb|ADO49650.1| protein-export membrane protein SecF [Enterobacter cloacae SCF1] Length = 323 Score = 220 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L + +I ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLVLAIIVMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 PVD+ +R +LE + QNF + +VR+ G Q +++ Sbjct: 65 PVDMDQMRLSLEKAGFNEPQLQNFGSSHDIMVRMPPVKGADGGQELGSKVLAVVNESTSQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + I++LIY+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQSGAMALMAALISILIYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG ++ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLVVILMLFLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|258514411|ref|YP_003190633.1| preprotein translocase subunit SecF [Desulfotomaculum acetoxidans DSM 771] gi|257778116|gb|ACV62010.1| protein-export membrane protein SecF [Desulfotomaculum acetoxidans DSM 771] Length = 291 Score = 220 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 88/293 (30%), Positives = 143/293 (48%), Gaps = 7/293 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 + +R R IS+L I + LF GLN GIDF GG V N+ V ++ +R+ L Sbjct: 3 FEIVRRRKIWYVISLLVLIPGLISLFVQGLNLGIDFTGGNIFEVRFNKQVTVNELRNALS 62 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 ++ D Q G Y V + + T+ + VGP Sbjct: 63 EYELQDSVIQQSGGND-------YIIRTKELSLAESGKVVSGLKSKLGELTVMKNDQVGP 115 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 I +EL R ++ ++++ + ML YI RF++ + A+ LI D+ G F+LF +E + Sbjct: 116 TIGKELTRNALLALLVAFMLMLGYISWRFEFKQGVAALLALIHDVFVVTGIFSLFQLEVD 175 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 VAA+LT+IGYS+ND +V++DR+R+NM S +L++ S+ +T+ RS+ T M Sbjct: 176 SYFVAAILTIIGYSINDTIVIFDRIRENMLSRKKGQSLEELVNSSLWQTMARSINTVMTV 235 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +L + GGS I F + + G+ SSIF A+ I + + + Sbjct: 236 IFVLLALFFLGGSTIKIFVLALLIGVFSGCYSSIFNASQIWVDLKLMEGNKKK 288 >gi|254303695|ref|ZP_04971053.1| protein translocase subunit SecF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323887|gb|EDK89137.1| protein translocase subunit SecF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 317 Score = 220 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 83/295 (28%), Positives = 147/295 (49%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + + ++ + IS + SI + FT GLNYGIDF GG + Sbjct: 1 MKVNLHIIKRIKLYLSISTVLVTLSIIVFFTKGLNYGIDFSGGNLFQLKYTETTVTLNQI 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + ++ N + K + + + + + + + Sbjct: 61 NENLDKLAEELPQVNSNSRKVQISNDGTVIVRVPELNEADKDKVLESLKNLGAYNLDKED 120 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VG I +L + I + I AI ++IYI +RF++ FA+G I +L+ DI +GF AL G Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVIYITMRFEFSFAVGGILSLLHDIIIAVGFIALMG 180 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 E + +AA+LT++GYS+ND +V+YDR+R+N+K + + +D+S+N+T RS+ T Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEECMDESVNQTAIRSINT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 S+ SV+ + ++GG+ + +F + + GI+ SSIF+A PI+ + + N Sbjct: 241 SVTTLFSVIAILIFGGASLKTFIMTLLIGILAGTYSSIFVATPIVYLLNKRKGNN 295 >gi|304388153|ref|ZP_07370277.1| protein-export membrane protein SecD [Neisseria meningitidis ATCC 13091] gi|304337862|gb|EFM04007.1| protein-export membrane protein SecD [Neisseria meningitidis ATCC 13091] Length = 618 Score = 220 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 332 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597 >gi|145637215|ref|ZP_01792877.1| preprotein translocase subunit SecF [Haemophilus influenzae PittHH] gi|145269660|gb|EDK09601.1| preprotein translocase subunit SecF [Haemophilus influenzae PittHH] Length = 324 Score = 220 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 92/309 (29%), Positives = 156/309 (50%), Gaps = 5/309 (1%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 + +FM+ R +G +S L + S+ + T G N+G+DF GG+ Sbjct: 6 KDKDGHFIREINGIKLPFPLTEFMKVRKFGYILSALLMVISLFFIITKGFNWGLDFTGGV 65 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 ++ +L +RS L I Q ++ ++RL DS + E VK Sbjct: 66 VFDTHFSQSANLEQIRSKLHENGIESPIVQTTGSVQDVMIRLPASNNDST----IGEHVK 121 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + + I++ E VGP + EL + + + + +LIY+ RF+W G+I + Sbjct: 122 SMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSIAS 181 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L D+ TLG F+ IE +LT VAA+L+++GYS+ND +VV+DR+R+N + + D Sbjct: 182 LAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-RRLDTID 240 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +ID S+ +TL R++ TS+ + V+ + +GGS I +F++ + GI SSIF+A I Sbjct: 241 IIDISLTQTLSRTIITSVTTLVVVMALFFFGGSSIHNFSLALLVGIGFGTYSSIFVAIAI 300 Query: 820 LLFIYDWRA 828 + R Sbjct: 301 AYDVGLRRE 309 >gi|300703080|ref|YP_003744682.1| sec/yeg protein translocase auxillary subunit [Ralstonia solanacearum CFBP2957] gi|299070743|emb|CBJ42038.1| SecYEG protein translocase auxillary subunit [Ralstonia solanacearum CFBP2957] Length = 627 Score = 220 bits (559), Expect = 1e-54, Method: Composition-based stats. Identities = 170/515 (33%), Positives = 274/515 (53%), Gaps = 26/515 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL P +L + LGLDLRGG H +L+VD + + L Sbjct: 109 IVALNLLSGSPRWLTAIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ +G+ + + I++ F++ E + + + Sbjct: 160 AGDIRTQLRDKGVRHNGIERSGTTISIKFSNPDEAERARGLLADSTR--------ELTFA 211 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 T ++ + + +V +A++Q++ + R++++G+SE IQ+ G RI++QL Sbjct: 212 SDKTADGVTLTGTFTAAAMKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248 PG QD ++ + ++G TA + PN + G G L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARMADPNATGIPRLTDPVPLGDELFTQGRGAPVLLQKQVI 331 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G +N A+A FD H P VDI+ D G R +++RDNIGK +A+VL + + Sbjct: 332 FTGDRINSASAGFDQN-HNPSVDITLDGQGGRMLRDISRDNIGKRMAIVLFEKGKGEVLT 390 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G ++E+A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 391 VATIQSELGSRFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 450 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + G I +FM++ Y +G + S+ +NV L +A+LS+L ATLTLP IA I L +G Sbjct: 451 DSAAYGFAAISVFMVLYYMLFGAFSVVSLGVNVFLLIAILSMLQATLTLPGIAAIALALG 510 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NERIREE R S ++ GF RA++TI DSN+T LIA + L FG G V Sbjct: 511 MAIDANVLINERIREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 RGFA+ L IL SMF+A+ R+++ KK Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 78/181 (43%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG A+ +++ + + F ++ +L +++ + Sbjct: 429 MEIIEERTIGPSLGADNIKKGFDSAAYGFAAISVFMVLYY-MLFGAFSVVSLGVNVFLLI 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ S + I Sbjct: 488 AILSMLQATLTLPGIAAIALALGMAIDANVLINERIREELR---NGASPQMAIAAGFERA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FA+ GI+ + S++F ++ Y + Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604 Query: 829 K 829 K Sbjct: 605 K 605 Score = 37.7 bits (85), Expect = 9.0, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 15/33 (45%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34 R W ++ + IG L LPNF ++ + Sbjct: 3 RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQ 35 >gi|242240319|ref|YP_002988500.1| preprotein translocase subunit SecF [Dickeya dadantii Ech703] gi|242132376|gb|ACS86678.1| protein-export membrane protein SecF [Dickeya dadantii Ech703] Length = 323 Score = 220 bits (559), Expect = 1e-54, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W G+S L + SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYWAFGLSGLLLLLSILVMGVRGFNWGLDFTGGTVIEISLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 VDL +R LE D QNF ++ +VR G++ Q ++V Sbjct: 65 SVDLEQMREALEKAGFADPLVQNFGSSRDIMVRTPPAKGETGGQVLGSKVVNVINETTSQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + I +LIY+ RF+W A G + L D+ T Sbjct: 125 NAVVKRIEFVGPSVGADLAQTGAMALMAALICILIYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 MGVLSLFNIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG+++ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGAMLRGFSLTMLIGVTIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|114771852|ref|ZP_01449245.1| protein-export membrane protein SecF [alpha proteobacterium HTCC2255] gi|114547668|gb|EAU50559.1| protein-export membrane protein SecF [alpha proteobacterium HTCC2255] Length = 322 Score = 220 bits (559), Expect = 1e-54, Method: Composition-based stats. Identities = 116/304 (38%), Positives = 180/304 (59%), Gaps = 6/304 (1%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+PD I I F ++ G S+L + SI L F +GLN GIDF GG + A Sbjct: 1 MRLKLVPDNIKINFFQSTRLTFGASVLAMVISIFLFFFNGLNLGIDFLGGTTIRTDAQTS 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGE-----KNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 VD+ RS L+ L +GD++ +R + Q G+ A V+ VK + Sbjct: 61 VDVGAYRSALKPLDLGDVTVTEIFDVTKPDLNAAQIRFEAQSGEEAATVEVIRAVKAALL 120 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + T E VGP++S EL++ I V+ + A+L YIW+RF+W F++GAI L+ D Sbjct: 121 SLDETITFPQVESVGPEVSGELVQAAITAVLAAIGAVLFYIWLRFEWQFSVGAIAALVHD 180 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I T+G F+L I+F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y ++ +DL++ Sbjct: 181 IVITIGIFSLLQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKTL-LKDLLNM 239 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 SINETL R+V TS+ I+++ + + GG VI F M +G+++ SS+F+A+ ILL + Sbjct: 240 SINETLSRTVMTSLTTLIALISLFILGGDVIHGFVFAMIWGVIIGTYSSVFVASSILLRL 299 Query: 824 YDWR 827 R Sbjct: 300 GVKR 303 >gi|59712573|ref|YP_205349.1| preprotein translocase subunit SecF [Vibrio fischeri ES114] gi|197334697|ref|YP_002156794.1| protein-export membrane protein SecF [Vibrio fischeri MJ11] gi|59480674|gb|AAW86461.1| SecYEG protein translocase auxillary subunit [Vibrio fischeri ES114] gi|197316187|gb|ACH65634.1| protein-export membrane protein SecF [Vibrio fischeri MJ11] Length = 316 Score = 220 bits (559), Expect = 1e-54, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 161/299 (53%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F L+ I FMR S+L I SI L T LN+G+DF GG + V +P Sbjct: 1 MFQLMKAEKTIDFMRWSKAAFLFSMLMIIASIATLSTKWLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 L +RS LE+ GD + QNF ++ +VRLQ + + + +++ Sbjct: 61 QLPDIRSALEAKGFGDATVQNFGTARDVIVRLQPRE-NVKGEELGNQIISAIKEGTGEQV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +++S + +L Y+ +RF+W A GA+ L DI TLG Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILAYVSMRFQWRLAAGAVLALAHDIIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ IE +LT +AA+LT++GYS+ND +VV+DR+R+N S D+I+ +I +TL Sbjct: 180 IFSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGDSN-DIINDAITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GG++I FA+ + GI + SSI++A+ + L + R Sbjct: 239 SRTLITSATTLFVVIALFTQGGAMIHGFALALLLGITIGTYSSIYVASALALKLGITRE 297 >gi|161350050|ref|YP_157794.2| preprotein translocase subunit SecD [Aromatoleum aromaticum EbN1] Length = 621 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 184/517 (35%), Positives = 284/517 (54%), Gaps = 26/517 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL A P +L + LGLDLRGG H +LEVD + L Sbjct: 105 IVALNLLSASPTWLTAIHA---------LPMYLGLDLRGGVHFLLEVDMPGAITKRLDAT 155 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + +LR+ L+ + + + + N + L F D+ +E + + + + D Sbjct: 156 AGDLRTLLRDKDVRHAGIVREGNTVQLRFRDAAQREAARNAILNSTRDLQLVDRDDG--- 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 +T+ ++ L+ + AI+Q++ + RI+++G++E IQ+ G++RI++QL Sbjct: 213 ----STDLKLIATLTPVAQQTIRDFAIKQNITTLHNRINELGVAEPVIQQQGANRIVVQL 268 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKV 247 PG QD ++ + +LG TA + V + FG + G+ LV +V Sbjct: 269 PGVQDVAKAKDILGRTATLEVRMVDDSPGALEAALAGNVPFGTELYTERGGSPLLVRSQV 328 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVL 303 ++G L A FD +T++P V ++ D G+R F +VTR+N+GK + G V+ Sbjct: 329 VLTGDRLTDAQPGFDGQTNEPAVHLTLDAAGSRIFRDVTRENVGKRMAILLIEKGKGEVV 388 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 TAPVI I G+ QISG+ T A +A +LRAGSL + I+EER VG LG+D+I K Sbjct: 389 TAPVIRSEIGGGRVQISGSMTTTEANDVALLLRAGSLAAPMEIIEERTVGPSLGADNIAK 448 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G + + G + I +FMI Y +GL++ ++ N++L +ALLSLL ATLTLP IA + L Sbjct: 449 GFNSTLWGFIAIAVFMIAYYMLFGLISAIALAANLLLLVALLSLLQATLTLPGIAAMALT 508 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+A+D+N+L+NERIREE R S ++ G+ RA+ TI DSNIT LIA + L FG G Sbjct: 509 LGMAIDANVLINERIREELRNGVSPQAAIHTGYDRAFDTILDSNITTLIAGIALLVFGSG 568 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 VRGFA+ L IL SMF+AI I R ++ I ++ Sbjct: 569 PVRGFAVVHCLGILTSMFSAILISRMLVNLIYGRRRK 605 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 85/208 (40%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I VGP + + I KG + IA+ Sbjct: 402 VQISGSMTTTEANDVALLLRAGSLAAPMEIIEERTVGPSLGADNIAKGFNSTLWGFIAIA 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + F L + L ++ + +L L +AA+ +G +++ V++ Sbjct: 462 VFMIAYY-MLFGLISAIALAANLLLLVALLSLLQATLTLPGIAAMALTLGMAIDANVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ +S + I + + +++ I+ + + V+G + FA+ Sbjct: 521 ERIREELR---NGVSPQAAIHTGYDRAFDTILDSNITTLIAGIALLVFGSGPVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + S+I I+ ++ IY R K Sbjct: 578 CLGILTSMFSAILISRMLVNLIYGRRRK 605 Score = 51.2 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 25/120 (20%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W IL ++ GL+ LPNF + ++V Sbjct: 3 RYPLWKNILIGLVLFFGLIYTLPNFYGEVPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + L+ + + N I + + + D + L Sbjct: 38 SGKATLKLDPALVAPIEQTLRDAEVPYDGLFVDGNSIRVRLGSTEDQLRAKDSIEKRLNP 97 >gi|320186038|gb|EFW60783.1| Protein-export membrane protein SecF [Shigella flexneri CDC 796-83] Length = 323 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L I +I ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q +++K Sbjct: 65 PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + +++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGEDLTQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|255321130|ref|ZP_05362296.1| protein-export membrane protein SecD [Acinetobacter radioresistens SK82] gi|262380181|ref|ZP_06073336.1| protein-export membrane protein SecD [Acinetobacter radioresistens SH164] gi|255301684|gb|EET80935.1| protein-export membrane protein SecD [Acinetobacter radioresistens SK82] gi|262298375|gb|EEY86289.1| protein-export membrane protein SecD [Acinetobacter radioresistens SH164] Length = 633 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 159/535 (29%), Positives = 275/535 (51%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D ++ ++ + +LR L++ + Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKALSQRMETSATDLRRQLRENNL 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ N+I L FA + +E + D + + L ++T + + Sbjct: 163 KFNSLTLNNNQINLQFAQNDDREAVMDFLRRNGNEF--------TQQALASSTGPMLRLT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ S+A+ Q++ +R RI+++G++E+ +Q GS+RI++ LPG QD + +++L Sbjct: 215 YTDARRQEIQSYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVDLPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKVLP--------------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V + G Q L++ ++G Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKSNGQPLPPGTELFAYESLDSGRQLLLQRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F T V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDTGGAEVNITLDSAGGKLMADATRNAVGKRMAVLFIENKQRISYVTDPV 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QA+ + +I+G + + A LA MLRAG+L + V Sbjct: 395 TGTQTEVRTPYAESVVINAATIQAVLGSQFRITGLDSPQEASELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I KG + G +L+ ++M+V + +GL+A+F++ N+ +TL+++S Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVFNLAMTLSIMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 +GA LTLP IAGIV+ IG+AVD+N+L+ ERIREE + S ++ G+ RAY+TIFDSN Sbjct: 515 IGAALTLPGIAGIVITIGMAVDANVLICERIREEMKWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T + +LF G G ++GFA+T+ + I SMFTAI++ RA++ I ++ Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIACSMFTAITVTRAIVQIIYGKRRNLK 629 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 4/206 (1%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 Q + + + +VGP + +E I KG++ I + + I++ + Sbjct: 430 DSPQEASELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVF 489 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 F+ F L A L+ ++ TL + G L +A ++ IG +V+ V++ +R+R+ Sbjct: 490 FRL-FGLIANFALVFNLAMTLSIMSWIGAALTLPGIAGIVITIGMAVDANVLICERIREE 548 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 MK S + I + +++ F+ + G I FA+ + GI Sbjct: 549 MKW---GASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIAC 605 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + ++I + I+ IY R ++ Sbjct: 606 SMFTAITVTRAIVQIIYGKRRNLKKL 631 >gi|71281229|ref|YP_267866.1| preprotein translocase subunit SecF [Colwellia psychrerythraea 34H] gi|71146969|gb|AAZ27442.1| protein-export membrane protein SecF [Colwellia psychrerythraea 34H] Length = 315 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 90/298 (30%), Positives = 159/298 (53%), Gaps = 2/298 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 ++ + FM R + S L I SI L T+ LN+G+DF GG + V D Sbjct: 1 MQILQLKETVNFMSYRKIALVFSALLMIASIFSLATNKLNFGLDFTGGTLIEVGFQEAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R +++ D Q + ++ ++RL + D A+ E++ Sbjct: 61 LEKLRLVMKTNGFADAKVQFYGSSRDVVIRLGLRD-DVKAEMLGNEVLDVLQGATGQTVD 119 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VG + EL +G + ++ + I +LIY+ RF+W FA+G++ L D+ TLG Sbjct: 120 MRRIEFVGASVGDELAEQGGLAMLTALICILIYVAFRFEWRFAVGSVVALFHDVLLTLGL 179 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F++ +EF+LT +AA+L +IGYS+ND +VV DR+R+N + S + ++I+ S+ +TL Sbjct: 180 FSILQLEFDLTVLAAILAVIGYSLNDTIVVSDRIRENFRKVRNSEA-EEIINISLTQTLS 238 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R+ TS+ + + + GG++I FA + FG+ V SSI++A+ + L + + Sbjct: 239 RTFITSITTLLVLAALFFQGGALIHGFATALLFGVFVGTYSSIYVASLVALSLGISKE 296 >gi|325207652|gb|ADZ03104.1| protein-export membrane protein SecD [Neisseria meningitidis NZ-05/33] Length = 618 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 332 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597 >gi|91781853|ref|YP_557059.1| preprotein translocase subunit SecD [Burkholderia xenovorans LB400] gi|91685807|gb|ABE29007.1| SecD export membrane protein [Burkholderia xenovorans LB400] Length = 695 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 163/516 (31%), Positives = 268/516 (51%), Gaps = 24/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L A P +L + LGLDLRGG H +L+VD +N L Sbjct: 109 IVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ I + ++ + ++FAD + + ++ + + P Sbjct: 160 ASDARTLLRDSNIRDGGVNRVNQTVVINFADQATADIASKQLGRSISELQWASQTGPD-- 217 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G++E IQ+ GS RI+++L Sbjct: 218 -----GGVQLVGTFTPTVQKAVQDAALKQNITTLHNRVNELGVAEPVIQQQGSDRIVVEL 272 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L+ ++ Sbjct: 273 PGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQIIF 332 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 333 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVASVSRDNIGKPMAMVLFEKGKGEVLTV 391 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I KG Sbjct: 392 ATIQSELGDRFQITGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRKGFH 451 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 ++V G I +FMI Y +G+++ + +N++L +A+LS+L ATLTLP IA I L +G+ Sbjct: 452 SVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALGM 511 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+D+N+L+NER+REE R ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 512 AIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGIALLAFGSGPVR 571 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 GFAI + IL SMF+A+ R ++ KK Sbjct: 572 GFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 80/185 (43%), Gaps = 4/185 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + IRKG V+ A+ +++ + F + ++ L +++ + Sbjct: 429 MDIIEERTIGPSLGADNIRKGFHSVVWGFAAIAVFMIAYY-MLFGVISMIGLSVNLLLLI 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ + I Sbjct: 488 AVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGAPPQLAIQNGYAHA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ + + +G + FAI GI+ + S++F + I+ Y + Sbjct: 545 WATILDSNVTTLIAGIALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKK 604 Query: 829 KNARI 833 K + Sbjct: 605 KLKSL 609 Score = 40.4 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 29/123 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + IGL+ LPN ++ ++V Sbjct: 3 RYPLWKYAVMLVALVIGLVYTLPNLFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117 + + L I + + I + D+ + + D + Sbjct: 38 SGKATVKLDSTTLSAVEAALAANQIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQK 97 Query: 118 FLQ 120 L Sbjct: 98 SLN 100 >gi|312884253|ref|ZP_07743962.1| preprotein translocase subunit SecF [Vibrio caribbenthicus ATCC BAA-2122] gi|309368026|gb|EFP95569.1| preprotein translocase subunit SecF [Vibrio caribbenthicus ATCC BAA-2122] Length = 315 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 163/299 (54%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR W + +SIL SI L T LN+G+DF GG + V +P Sbjct: 1 MFQILKAEKVIDFMRWSKWTMILSILMIGGSIFSLSTKWLNWGLDFTGGTLIEVGFQQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 L +R+ LE+ GD + QNF ++ +VRL+ + G + +++ Sbjct: 61 QLEEIRTALEAKGFGDATVQNFGSSRDVMVRLRPREG-VAGEMLGHQILDAITQGTGETV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +I S I +L+Y+ RF+W A GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDELAENGGLAIIASLICILLYVSARFQWRLAAGAVLALAHDVIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + S ++++ SI +TL Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGTS-AEIMNSSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS + V+ + GG+ I FA+ + GI V SSI++A+ + L + + Sbjct: 239 SRTLITSGTTLLVVIALFTQGGANIHGFALALLLGITVGTYSSIYVASALALKLGITKE 297 >gi|241766127|ref|ZP_04764036.1| protein-export membrane protein SecD [Acidovorax delafieldii 2AN] gi|241363831|gb|EER59161.1| protein-export membrane protein SecD [Acidovorax delafieldii 2AN] Length = 627 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 169/514 (32%), Positives = 276/514 (53%), Gaps = 21/514 (4%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 I N + +S + +A+ + LGLDLRGG H +L+VD + + Y+ ++R+ Sbjct: 104 YIVALNLVSRSP--AWLTALHARPMYLGLDLRGGVHFMLQVDMQAALTKKAESYAGDIRT 161 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+ + I + + I + D + + ++ D + Sbjct: 162 ALRDKNIRHGGITRDGQAIEIKVRDEATQTAARNLISDQF--------TDLQTTSTPDGG 213 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 E ++ + +V A++Q++ + RI+++G++E IQ+ G RI++QLPG QD Sbjct: 214 EFKLRAAIKPEATRRVQDQALKQNITTLHNRINELGVAEPVIQQQGVDRIVVQLPGVQDT 273 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGI 252 ++ + +LG TA + V + G + D G +V+ +V ++G Sbjct: 274 AKAKDILGRTATLEVRLVDEGTEARAAEAGRGPVPFGAERYFDRSGQAVIVKKQVILTGE 333 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308 +L A FD +T +P V+++ D G+R F ++TR+N+GK + G V+TAPVI Sbjct: 334 NLTDAQPGFDGQTQEPTVNLTLDAKGSRIFRDITRENVGKRMAIVLFEKGKGEVVTAPVI 393 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 I G+ QISG T A A +LRAGSL + I+EE +G LG+D+I +G ++ Sbjct: 394 RTEIGGGRVQISGRMTTVEANDTALLLRAGSLAAPMEIIEEFTIGPSLGADNIARGIHSV 453 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 V G+V + FM V Y +G+ + ++ +NV+L LA+LS+L ATLTLP IA + L +G+A+ Sbjct: 454 VWGMVAVAAFMCVYYRLFGVFSTLALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAI 513 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 DSN+L+NERIREE R S ++ MG+ RA++TI DSN+T LI + L FG G VRGF Sbjct: 514 DSNVLINERIREELRDGVSPQAAIHMGYDRAWATILDSNVTTLIVGLALLAFGSGPVRGF 573 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 A+ + IL SMF+A+ R ++ +K Sbjct: 574 AVVHCIGILTSMFSAVFFSRGVVNLWYGRQKKLK 607 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 87/212 (41%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I +GI V+ +A+ Sbjct: 402 VQISGRMTTVEANDTALLLRAGSLAAPMEIIEEFTIGPSLGADNIARGIHSVVWGMVAVA 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ F + + L +++ L ++ L +AA+ +G +++ V++ Sbjct: 462 AFMCVYYRL-FGVFSTLALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ +S + I + + +++ I L + +G + FA+ Sbjct: 521 ERIREELRD---GVSPQAAIHMGYDRAWATILDSNVTTLIVGLALLAFGSGPVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++F + ++ Y + K + Sbjct: 578 CIGILTSMFSAVFFSRGVVNLWYGRQKKLKSV 609 >gi|289208481|ref|YP_003460547.1| protein exporter SecD [Thioalkalivibrio sp. K90mix] gi|288944112|gb|ADC71811.1| protein-export membrane protein SecD [Thioalkalivibrio sp. K90mix] Length = 622 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 165/520 (31%), Positives = 280/520 (53%), Gaps = 35/520 (6%) Query: 32 LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 P + ++LGLDLRGG H ++EVD D + ++ YS+ELR L++E I Sbjct: 107 APATPRWLRAINGQPMALGLDLRGGVHFLMEVDLDAVIGTAMERYSNELRGRLREERISF 166 Query: 89 FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148 ++ + +T+ F +E + + + + + L Sbjct: 167 DTVERGSRDLTVMFESEADREAAEGWLQRQYREELVWESRG-------SGDTSRLVATLD 219 Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 +++ ++ A++Q++ +R R+D++G++E I + G +RI++QLPG QD +R +++LG Sbjct: 220 DDHLTELRRQALQQNISTLRSRVDELGVAEPIIAQQGENRIVVQLPGVQDTARAKEVLGA 279 Query: 209 TAKMSFHKVLPN------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 TA + F V + + G R + DG L++ +V ++G ++ A++ Sbjct: 280 TATLEFRLVSESGDAQEADETGRAPSGTRLYYERDGTPVLLQRQVMLTGDYITDASSGIA 339 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVL 303 T P V I+ D GAR F VT DN+G+ + + Sbjct: 340 QDTGGPAVFINLDGQGARIFSRVTSDNVGRLMATVFIETSTETVEEDGEQVMRTSRSEEV 399 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 + QISG + A LA +LRAG+L ++IVEER VG LG ++I + Sbjct: 400 INVARINEPLGRRFQISGLDSSREARNLALLLRAGALAAPMSIVEERTVGPSLGQENIDR 459 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G ++V G + +++FM++ Y +G++A+ ++ LN+I +++LS+L ATLTLP IAGIVL Sbjct: 460 GMQSVVIGFIAVMIFMVLYYRVFGVIANVALALNLIFIVSVLSMLQATLTLPGIAGIVLT 519 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ ERIREE R S ++ G+ RA++TI D+N+T LIA +VLF FG G Sbjct: 520 VGMAVDANVLILERIREELRNGLSPQAAIASGYDRAFTTIADANVTTLIAALVLFLFGTG 579 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 ++GFAIT+ + I+ SMFTAI + RA++ ++ + Sbjct: 580 PIKGFAITLSIGIIASMFTAIMVTRAIVNLTYGRQRRLNR 619 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 103/257 (40%), Gaps = 4/257 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 G + V + N L R G ++ Sbjct: 368 GRLMATVFIETSTETVEEDGEQVMRTSRSEEVINVARINEPLGRRFQISGLDSSREARNL 427 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + +I VGP + +E I +G+ V+I IA++I++ + ++ F + A Sbjct: 428 ALLLRAGALAAPMSIVEERTVGPSLGQENIDRGMQSVVIGFIAVMIFMVLYYRV-FGVIA 486 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 L L++ + ++ L +A ++ +G +V+ V++ +R+R+ ++ +S Sbjct: 487 NVALALNLIFIVSVLSMLQATLTLPGIAGIVLTVGMAVDANVLILERIREELR---NGLS 543 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 + I + ++ I+ L + ++G I FAI ++ GI+ + ++I + Sbjct: 544 PQAAIASGYDRAFTTIADANVTTLIAALVLFLFGTGPIKGFAITLSIGIIASMFTAIMVT 603 Query: 817 APILLFIYDWRAKNARI 833 I+ Y + + R+ Sbjct: 604 RAIVNLTYGRQRRLNRL 620 Score = 39.3 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 31/124 (25%) Query: 1 MRN--NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58 MRN WL L ++ L A PN P+ Sbjct: 1 MRNSYPAWLYALIVVVILGAGLYAAPNLFPEDPS-------------------------- 34 Query: 59 EVDEDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116 V + G + EL + +G+ ++ + + +I L F + + A+ + Sbjct: 35 -VQIGNPTTGEIDQNIRELMGTILGAQGVTPHTVEEQDDGQILLRFETTDEQSTAAEILR 93 Query: 117 LFLQ 120 L Sbjct: 94 NALD 97 >gi|73542496|ref|YP_297016.1| preprotein translocase subunit SecF [Ralstonia eutropha JMP134] gi|72119909|gb|AAZ62172.1| protein translocase subunit secF [Ralstonia eutropha JMP134] Length = 323 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 91/305 (29%), Positives = 157/305 (51%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S L ++ L+ GL+ I+F GG + V + D Sbjct: 1 MEFFRIRRDIPFMKHALIFNVVSFLTFAAAVFFLWHKGLHLSIEFTGGTVMEVNYQQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ---TRVLEMVKKKITEIVP 647 L +R + L D+ QNF ++ ++RL Q G Q + E V + P Sbjct: 61 LEKIRGQVGKLGYTDVQVQNFGTSRDVMIRLPLQKGPDGKQVTSAQQSEQVMGALQAATP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G++ ++ I ++IY+ RF+W FA+ I + D+ Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLCVVIGIVIYLSFRFEWKFAVAGIIANLHDVVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AA+L ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAAILAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + VL M +GG + FA+ + GI+ SS+F+AA + ++ R Sbjct: 240 TMSRTIITHGSTEMMVLSMFFFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLIK 304 >gi|330446690|ref|ZP_08310342.1| export membrane protein SecD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490881|dbj|GAA04839.1| export membrane protein SecD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 606 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 158/536 (29%), Positives = 287/536 (53%), Gaps = 42/536 (7%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P++L + LGLDLRGG H ++EVD D + L Sbjct: 89 VVALNLAAATPSWLESIGA---------TPMKLGLDLRGGVHFLMEVDMDAAMEKLLGQQ 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + R+ L++E I ++ + ++ + + D E + KL+ D Sbjct: 140 EETFRTELREEKIRYRAISKTKDSVQVRLRDEAQLEQA--------ELALEKLHPDMVFT 191 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 T ++ ++ + ++ ++A++Q++ I+R R++++G++E +QR G++RI+++L Sbjct: 192 TSETNGRFVLTAKFTEERLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQGANRIVVEL 251 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVE 248 PG QD +R +++LG TA + F +V + G DG +++ +V Sbjct: 252 PGVQDTARAKEILGATATLEFREVDSSADLAAAAAGRVPAGSEVKMTRDGRPAVLKKRVI 311 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------ 302 ++G H+ ++ + +P V+IS D G + +++N+GK +A V Sbjct: 312 LAGSHITD-ASSSADEYGRPQVNISLDTEGGSKMTAFSKNNVGKLMATVFTEYKDSGKRG 370 Query: 303 ------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 + Q+ +I+G + A L+ +LRAG+L ++IVEER Sbjct: 371 PDGKVILEKHEEVINQATIQSALGRNFRITGIDSQAEAHNLSLLLRAGALIAPISIVEER 430 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG- 409 +G +G +I G A + G+V ++LF ++ Y +GL+A+ ++ +N++L + ++S++ Sbjct: 431 TIGPSMGQQNIDMGVQACIWGMVAVMLFTLLYYRGFGLIANLALMMNLVLIIGVMSMIPG 490 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R+ +S ++ G+ A+STI D+NIT Sbjct: 491 ATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIQQGYGNAFSTIADANIT 550 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LI ++LF G GA++GFA+T+ + IL SMFTAI RA++ I K++ + I Sbjct: 551 TLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRAVVNLIYGGKRVDKLSI 606 Score = 147 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 82/174 (47%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + ++ I G+ I +A++++ + ++ F L A L++++ +G ++ Sbjct: 431 TIGPSMGQQNIDMGVQACIWGMVAVMLFTLLYYR-GFGLIANLALMMNLVLIIGVMSMIP 489 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G L +A ++ +G +V+ V++++R+R+ ++ S + I + Sbjct: 490 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQGYGNAFSTIAD 546 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I+ + + G I FA+ ++ GI+ + ++I ++ IY + Sbjct: 547 ANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRAVVNLIYGGKR 600 >gi|218549931|ref|YP_002383722.1| preprotein translocase subunit SecF [Escherichia fergusonii ATCC 35469] gi|218357472|emb|CAQ90111.1| SecYEG protein translocase auxillary subunit [Escherichia fergusonii ATCC 35469] gi|324114628|gb|EGC08596.1| protein-export membrane protein SecF [Escherichia fergusonii B253] gi|325498308|gb|EGC96167.1| preprotein translocase subunit SecF [Escherichia fergusonii ECD227] Length = 323 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 165/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L + SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLVASIIIMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 PV++ V+R L+ + QNF + +VR+ G++ Q ++V Sbjct: 65 PVEIDVMRDALQKAGFEEPQLQNFGSSHDIMVRMPPAEGETGGQVLGSKVVTVINEATDQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + +++L+Y+ RF+W A G + L D+ T Sbjct: 125 HAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + S+ ++ + S+ + Sbjct: 185 LGILSLFHIEVDLTIVASLMSVIGYSLNDSIVVCDRIRENFRKIRRGTSY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|262377440|ref|ZP_06070663.1| protein-export membrane protein SecD [Acinetobacter lwoffii SH145] gi|262307670|gb|EEY88810.1| protein-export membrane protein SecD [Acinetobacter lwoffii SH145] Length = 632 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 156/534 (29%), Positives = 273/534 (51%), Gaps = 49/534 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D ++ ++ + +LR L+ + Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQLRDNNL 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ N I + FA++ + D + + + T T + + Sbjct: 163 KFNSLNLSNNTIVMQFANNDDRSATMDFLRRNGNEF--------TQQAVATETGSTLRLN 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ S+A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDVRKQEIESYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKVLPNNSK-------------KGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 G TA + F V N + + G Q L+ ++G Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGQATGALPPGTEVFAYESLDSGRQLLLNRNRILTGER 334 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A++ F T V+I+ D G + + TR+ +GK + Sbjct: 335 VQNASSGFSQDTGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQRINYVEDPAT 394 Query: 295 ------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 V+ QA+ + +I+G + + A LA MLRAG+L + VE Sbjct: 395 GTQTEVRTPYTESVVINAATIQAVLGSQFRITGLDSPQEAAELALMLRAGALAAPMYFVE 454 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG ++I KG + G +L+ ++M+V + +G++A+F++ N+ + L ++S + Sbjct: 455 ERVIGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRVFGVIANFALVFNLAMILTVMSWI 514 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE + S ++ G+ RAY+TIFDSN+ Sbjct: 515 GASLTLPGIAGIVITIGMAVDANVLICERIREEMKWGASPKQAIVAGYDRAYNTIFDSNL 574 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 T + +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I K+ Sbjct: 575 TTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAVVQLIYGKKRNLK 628 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 86/206 (41%), Gaps = 4/206 (1%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 Q + + + ++GP + +E I KG++ I + + I++ + Sbjct: 429 DSPQEAAELALMLRAGALAAPMYFVEERVIGPSLGQENIDKGVLSTQIGFLLVAIWMVVF 488 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 F+ F + A L+ ++ L + G L +A ++ IG +V+ V++ +R+R+ Sbjct: 489 FRV-FGVIANFALVFNLAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREE 547 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 MK S + I + +++ F+ + G I FA+ + GIV Sbjct: 548 MKW---GASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVC 604 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + ++I + ++ IY + ++ Sbjct: 605 SMFTAITVTRAVVQLIYGKKRNLKKL 630 Score = 43.5 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 25/117 (21%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR W +L ++ I L ALP+ P +++ Sbjct: 1 MRYPAWKYVLILVVLVISTLYALPSLYPDEPA-------------------------VQI 35 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + LK E I N L S + + + Sbjct: 36 SGAKAGTQIDASIVQKAEQILKTENIATHDNSFGNNAALLRVDSSESQLKAKEALRR 92 >gi|225025678|ref|ZP_03714870.1| hypothetical protein EIKCOROL_02580 [Eikenella corrodens ATCC 23834] gi|224941571|gb|EEG22780.1| hypothetical protein EIKCOROL_02580 [Eikenella corrodens ATCC 23834] Length = 610 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 167/506 (33%), Positives = 277/506 (54%), Gaps = 26/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ P M K N + LGLDLRGG H + VD V+ S + R L+K+ I Sbjct: 104 NLIANTPDWMTKLGANPMFLGLDLRGGVHFTMRVDMHAAVDKTFDRISGDFRRQLRKDKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +MR+ + + + F D+ + K+ + ++ + + + Sbjct: 164 RTGNMRRSGDTLIVPFQDAATLQAALPKLK------------EIAPDVELKADGNNLVVS 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L + Q+ A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LPETTQTQIRDAAVKQNINTLHNRVNELGVAEPIIQQAGPDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVL------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 G TA + V G L ++G Q LV +VE +G ++N A A Sbjct: 272 GRTATLEVRMVADDPALLQQAEAGNVPAGYELLPTAEGGQLLVSKQVEFTGDNINDAQAG 331 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSGK 316 F ++P V++ D G F ++TR+N+G+ A++L + ++TAP IN+ IP G Sbjct: 332 F-THDNRPSVNLKLDNAGTSIFADLTRNNVGRRTAMILIDQGKAEIVTAPTINEPIPGGN 390 Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376 QISG+ + A A +LRAGSL + I+EER +G +G ++I KG + + G +++ Sbjct: 391 VQISGSMNVAEANDTALLLRAGSLAAPMEIIEERTIGPSMGKENIQKGFHSTLWGFLVVA 450 Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 FM+V Y +G+ + ++ N++ +A+LSLL ATLTLP IA I L +G+A+DSN+L+NE Sbjct: 451 AFMVVYYRLFGIFSVLALTANLLFLVAILSLLQATLTLPGIAAIALTLGMAIDSNVLINE 510 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 RIREE R S ++ G+ A+ TI DSNIT+LIA + L FG GAVRGFA+ + I Sbjct: 511 RIREELRDGVSPQQAISEGYRHAWDTIVDSNITSLIAGIALLVFGSGAVRGFAVVHCIGI 570 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKS 522 L SMF+++ + R + ++ S Sbjct: 571 LTSMFSSVVVSRTFVNLWYGRRRKLS 596 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 89/212 (41%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I+KG + + + Sbjct: 391 VQISGSMNVAEANDTALLLRAGSLAAPMEIIEERTIGPSMGKENIQKGFHSTLWGFLVVA 450 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ F + ++ L ++ + +L L +AA+ +G +++ V++ Sbjct: 451 AFMVVYYRL-FGIFSVLALTANLLFLVAILSLLQATLTLPGIAAIALTLGMAIDSNVLIN 509 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ +S + I + V +++ + I+ + + V+G + FA+ Sbjct: 510 ERIREELRD---GVSPQQAISEGYRHAWDTIVDSNITSLIAGIALLVFGSGAVRGFAVVH 566 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + SS+ ++ + Y R K + + Sbjct: 567 CIGILTSMFSSVVVSRTFVNLWYGRRRKLSNL 598 Score = 40.8 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L ++ + + ALPNF ++ + + I Sbjct: 3 RYPLWKYLLIGLVIVVSAIYALPNFYGETPAVQVSTNRQSIHI----------------- 45 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + E LK I M + + + + D + L Sbjct: 46 -----DQTTEQAVAEA---LKAANIQHNGMFIADGSLRVRLPNEELQSKARDVIEQKL 95 >gi|322513987|ref|ZP_08067062.1| protein-export membrane protein SecF [Actinobacillus ureae ATCC 25976] gi|322120213|gb|EFX92171.1| protein-export membrane protein SecF [Actinobacillus ureae ATCC 25976] Length = 324 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 94/297 (31%), Positives = 161/297 (54%), Gaps = 4/297 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + FM+ R+ G S++ + I + T G N+G+DF GG + ++P DL VR Sbjct: 16 PYKLVPFMKYRYVGFVFSLVVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLGKVR 75 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 LE G+ Q +K ++RL GD +++++V + + P +TI++ E Sbjct: 76 GLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQDL---DPSATIKSVE 132 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + +L+Y+ RF+ A+G I L D+ T+G F+ Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTIGIFSFLQ 192 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N +S +++ID S+++TL R++ T Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKI-RRVSSQEVIDISLSQTLSRTLMT 251 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 S+ V + +GG I SF++ + GI SSI+IA + L + R + Sbjct: 252 SVTTLFVVASLYWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVK 308 >gi|315127831|ref|YP_004069834.1| preprotein translocase subunit SecF [Pseudoalteromonas sp. SM9913] gi|315016345|gb|ADT69683.1| preprotein translocase subunit SecF [Pseudoalteromonas sp. SM9913] Length = 315 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 165/291 (56%), Gaps = 2/291 (0%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 ++FM R +G S L I S+ LF GLN+G+DF GG + V ++P DL VR+ Sbjct: 9 KTLRFMSLRKVAMGFSTLLIIASLASLFVKGLNFGLDFTGGTAVEVGFSQPADLKKVRNV 68 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L D S Q F + LVRL + D A+ + V + + ++ E V Sbjct: 69 LAENDFADASVQLFGSSQEILVRLAPRGDDVKAEV-IGNQVIAALKQADDSVVMRRIEFV 127 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + +L +G + ++ + I +LIY+ RF+W FA+GA+ L+ D+ T+G F++ G+E Sbjct: 128 GPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITIGLFSVLGLE 187 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AA+L +IGYS+ND +VV DR+R+N + ++ID S+ +TL R++ TS+ Sbjct: 188 FDLTILAAILAVIGYSLNDTIVVSDRIRENFRK-VRIDDTIEIIDLSLTQTLNRTLVTSI 246 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + VWGG I FA + FG+ + SS+++A+ + + + + Sbjct: 247 TTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAIAMGVSKE 297 >gi|302383725|ref|YP_003819548.1| protein-export membrane protein SecF [Brevundimonas subvibrioides ATCC 15264] gi|302194353|gb|ADL01925.1| protein-export membrane protein SecF [Brevundimonas subvibrioides ATCC 15264] Length = 327 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 99/310 (31%), Positives = 170/310 (54%), Gaps = 8/310 (2%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV- 583 + ++P F++ +S++ SI F GLN GIDF+GG + V Sbjct: 1 MTWWPLIKVLPQKTNFHFVKYARLAAVLSVVLCTASIIGCFYPGLNMGIDFRGGASMEVY 60 Query: 584 -LANRPVDLSVVRSNLE-----SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637 A + ++ +R + + + I+ ++ + E +++Q + QT V+ Sbjct: 61 KPAGQSINAEAIREAVSGLEIGDVGVQGIARRDTNVEDGSTAIVRFQVPEGRDQTAVVNS 120 Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 V+ I + V + E+VG K+S EL G++ + ++ + M YIW RF+ F GA+ Sbjct: 121 VQSAINQAVGQVSYSGVEVVGSKVSGELFTSGLLALGVAILLMFAYIWFRFEPQFGFGAV 180 Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757 L+ D+ T G LF +EF+L VAA+LT+IGYS+ND VVV+DR+R+N++ Y ++ Sbjct: 181 AGLLHDVILTFGLIVLFKLEFSLNMVAAILTVIGYSMNDTVVVFDRLRENLRKY-KTMPL 239 Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817 R++ID S+NETL R++ T + A + + +A +GG + F+I + FGI++ SSI++ A Sbjct: 240 REVIDLSLNETLSRTIITGVTAVMVLAALAFFGGEALFGFSIALMFGIIIGTYSSIYVGA 299 Query: 818 PILLFIYDWR 827 PI+L R Sbjct: 300 PIILLWGVKR 309 >gi|67459571|ref|YP_247195.1| preprotein translocase subunit SecF [Rickettsia felis URRWXCal2] gi|75536029|sp|Q4UKA5|SECF_RICFE RecName: Full=Protein-export membrane protein secF gi|67005104|gb|AAY62030.1| Protein-export membrane protein secF [Rickettsia felis URRWXCal2] Length = 308 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + L+P+ I FM + SI+ S+ S + + N+GIDF GGI + V Sbjct: 1 MQIYPLRLLPNKIDFDFMNFKKVSYSFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R L L IG++ QNF E++ +R + + + + Sbjct: 61 DQAPDLPKMRGVLGELGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKASLQSNF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S +A+++YIW+RF+WYF LG + L+ D+ Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ SI Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL + Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFAN 298 Query: 826 WRAKNA 831 + Sbjct: 299 RKFNKK 304 >gi|317153242|ref|YP_004121290.1| protein-export membrane protein SecD [Desulfovibrio aespoeensis Aspo-2] gi|316943493|gb|ADU62544.1| protein-export membrane protein SecD [Desulfovibrio aespoeensis Aspo-2] Length = 531 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 184/527 (34%), Positives = 288/527 (54%), Gaps = 21/527 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M++ ++ ++ +GL LP+ P + +P N +SLGLDL+GG HL L V Sbjct: 1 MQSLRLRILATLVVLILGLAYMLPSI-PGVKESPLGALLPGNSVSLGLDLKGGIHLTLGV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D D ++ L D+L++ +EGI + I + ++ D V Sbjct: 60 DMDTAMHNNLSRLGDDLKAAAAEEGIFILRPTVISSSRLELVLLKGDQKAGFDTVIDRFS 119 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + ++ + + + + D++ ++Q+++ IR RIDQ G++E Sbjct: 120 ------PFSVEDTQVLGDGKIKYVLSIPAQYRDELTKLTMDQAIKTIRNRIDQFGVAEPD 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234 I++ RI IQLPG QDP R ++G TA + F V G+ Sbjct: 174 IRKQQGDRIQIQLPGLQDPERAINIIGQTAHLEFKMVDDTADLDKAKSGILAPGRELSTL 233 Query: 235 -------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 +++ ++G ++ ++P V I+F+ G F +T Sbjct: 234 VTTHAGGGQTEAPIVLKKDAVLTGEYITD-AKVQLDTWNQPYVSITFNARGGTIFANLTG 292 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 +N+ K +A+VLDG+V +APVI + I GKA I+GNFT E A LA +LRAGSLP + I+ Sbjct: 293 ENVNKRMAIVLDGKVYSAPVIQEKISGGKASITGNFTREEARDLAVVLRAGSLPAPVVIL 352 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 E+R VG LG +SI KG + + G+ LI++FM+V YG G+VAD + LN++L ++ L+L Sbjct: 353 EQRTVGPSLGQESIDKGIMSALVGMGLILVFMVVYYGFAGVVADLVLCLNIMLIMSGLAL 412 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 GATLTLP IAGI+L IG+AVD+N+++ ERIREE R+ +V +++ G+SRA TI D+N Sbjct: 413 FGATLTLPGIAGIILTIGMAVDANVIIYERIREELRRGLTVRAAIEEGYSRATLTIMDAN 472 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 +T +IA V+L+ FG G VRGFA+T+ L I+ SMFTAI + R + Sbjct: 473 VTTIIAAVILYQFGTGPVRGFAVTLTLGIISSMFTAIFVSRILFDLY 519 Score = 139 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 91/180 (50%), Gaps = 4/180 (2%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VGP + +E I KGI+ ++ +L+++ + + + + A L L+I + AL Sbjct: 354 QRTVGPSLGQESIDKGIMSALVGMGLILVFMVVYYGF-AGVVADLVLCLNIMLIMSGLAL 412 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 FG L +A ++ IG +V+ V++Y+R+R+ ++ ++ R I++ + + Sbjct: 413 FGATLTLPGIAGIILTIGMAVDANVIIYERIREELR---RGLTVRAAIEEGYSRATLTIM 469 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I+ + + +G + FA+ + GI+ + ++IF++ + +++A++ Sbjct: 470 DANVTTIIAAVILYQFGTGPVRGFAVTLTLGIISSMFTAIFVSRILFDLYTKSGSQSAKL 529 >gi|254419182|ref|ZP_05032906.1| protein-export membrane protein SecF [Brevundimonas sp. BAL3] gi|196185359|gb|EDX80335.1| protein-export membrane protein SecF [Brevundimonas sp. BAL3] Length = 329 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 176/310 (56%), Gaps = 8/310 (2%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV- 583 + L+P F++ + +S++ + SI F GLN GIDF+GG + V Sbjct: 3 MRGWPFIKLLPQKTNFHFVKYARFAAVLSVVLCVASIVACFVPGLNMGIDFRGGASMEVS 62 Query: 584 -LANRPVDLSVVRSNLESLQIGDISFQ-----NFDGEKNFLVRLQYQPGDSVAQTRVLEM 637 A + ++L VR + SL +GD+ Q + + + L++Q + QT+V+ Sbjct: 63 KPAGQAIELDRVREAVNSLNLGDVQVQGIARRDTNVDDGSTAILRFQVPEGRDQTQVVNQ 122 Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 V+ I++ V +VG K+S EL G++ + ++ M +YIW RF+ F GA+ Sbjct: 123 VETAISQTVGEVQYSGVSVVGSKVSGELFTSGLLALGVAIGLMFLYIWFRFEPQFGFGAV 182 Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757 L+ D+ T G LF +EF+L VAA+LT+IGYS+ND VVV+DR+R+N++ Y ++ Sbjct: 183 IGLLHDVVLTFGLIVLFRLEFSLNMVAAILTVIGYSMNDTVVVFDRLRENLRKY-KTMPL 241 Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817 R++ID S+NETL R++ T + A + + +A++GG + F+I + FGI++ SSI++ A Sbjct: 242 REVIDLSLNETLSRTIITGVTAVMVLAALAIFGGEALFGFSIALMFGIIIGTYSSIYVGA 301 Query: 818 PILLFIYDWR 827 PI+L R Sbjct: 302 PIILLWGVKR 311 >gi|90407020|ref|ZP_01215210.1| protein export protein SecF [Psychromonas sp. CNPT3] gi|90311891|gb|EAS39986.1| protein export protein SecF [Psychromonas sp. CNPT3] Length = 315 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 159/298 (53%), Gaps = 2/298 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + I FMR +S + SI L + LN+G+DF GG + V + V Sbjct: 1 MLQIFQPKNTIHFMRYSKRTTVLSFVLMAASILTLSINWLNWGLDFTGGTLIEVGFEQSV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L VR+ L Q Q F + L+RL + G +++ Sbjct: 61 NLPEVRTVLGEAQYSGAIVQYFGSSHDILIRLASEEG-VKGSVIGSKILHALQGADFGQV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +II+ + +L Y+ +RF+W A GA+ +L+ DI TLG Sbjct: 120 DMRRIEFVGPNVGAELAENGALAMIIALLCILAYVSLRFEWRLATGAVLSLVHDILITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ F +EF+LT +AA+L +IGYS+ND +VV+DR+R+N + T+ S D++D SI +TL Sbjct: 180 IFSFFQLEFDLTVLAALLAIIGYSLNDTIVVFDRIRENFRKLVTASSV-DVVDISITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 R++ +S+ + ++ + + GG +I FA + GIVV SSI++A+ + + + R Sbjct: 239 SRTLISSLTTLLVLISLFLVGGELIHGFATALLIGIVVGTYSSIYVASAVAIKLGTSR 296 >gi|307261550|ref|ZP_07543218.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868673|gb|EFN00482.1| Protein-export membrane protein SecF [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 324 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 161/297 (54%), Gaps = 4/297 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM+ R+ G S++ + I + T G N+G+DF GG + ++P DLS VR Sbjct: 16 PYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLSKVR 75 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 LE G+ Q +K ++RL GD +++ +V + + P +TI++ E Sbjct: 76 GLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMVLVHQDL---DPAATIKSVE 132 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + +L+Y+ RF+ A+G I L D+ T+G F+ Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTIGIFSFLQ 192 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N ++ +++ID S+++TL R++ T Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKI-RRVTSQEVIDISLSQTLSRTLMT 251 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 S+ V + +GG I SF++ + GI SSI+IA + L + R + Sbjct: 252 SVTTLFVVAALFWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVK 308 >gi|251790674|ref|YP_003005395.1| preprotein translocase subunit SecF [Dickeya zeae Ech1591] gi|247539295|gb|ACT07916.1| protein-export membrane protein SecF [Dickeya zeae Ech1591] Length = 323 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W G+S L I SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYWAFGLSGLLLILSIAVMGVRGFNWGLDFTGGTVIEISLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 VDL +R L+ D QNF ++ +VR+ +S Q ++V Sbjct: 65 SVDLEQMREALQKAGFADPLVQNFGSSRDIMVRMPPAHDESGGQALGSKVVNVINESTSQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + I+ E VGP + +L + G + ++ + I++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAIKRIEFVGPSVGADLAQNGAMALMAALISILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 MGILSLFDIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGAMLKGFSLTMLIGVAIGTVSSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|224826517|ref|ZP_03699618.1| protein-export membrane protein SecD [Lutiella nitroferrum 2002] gi|224601118|gb|EEG07300.1| protein-export membrane protein SecD [Lutiella nitroferrum 2002] Length = 613 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 175/520 (33%), Positives = 281/520 (54%), Gaps = 33/520 (6%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL A P++L + + LGLDLRGG H +LEVD + ++ Y Sbjct: 100 IIALNLLAASPDWLTKLKA---------YPMFLGLDLRGGVHFLLEVDMKAATDKTMERY 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R K + + ++++ N + + D+ + D V L ++ Sbjct: 151 AGDIRREFKDKKVRYGAIKRNGNTLEVQLRDAATLKAAEDAVARALPSLS---------- 200 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++S+ L I ++ S A++Q++ + R++++G++E IQ+ G++RI++QL Sbjct: 201 FTSDDNSYKLSLTLKPEEITRIQSDAVKQNITTLHNRVNELGVAEPIIQQSGANRIVVQL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNN---------SKKGFMFGVRFLRDSDGNQYLVE 244 PG QD ++ + +LG TA + V + + G + L + LV Sbjct: 261 PGVQDTAKAKDILGRTATLEVRMVSDDQSMVAEALAGNVPGGYELLDELTPRGPQKILVS 320 Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL----DG 300 +VE++G ++N A FD V I+ D GA F +VT +NIGK +A+VL Sbjct: 321 KEVELTGDNINDAQPGFDENGTPA-VHINLDSTGASIFRQVTAENIGKRMAMVLVEKGRA 379 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 V+TAPVI I G+ QISG+ A A +LRAGSL +NI+EER VG LG ++ Sbjct: 380 EVVTAPVIRSEIGGGRVQISGSMNAAEANDTALLLRAGSLAAPMNIIEERTVGPSLGKEN 439 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I KG + + G I +FM++ Y +GL++ S+ +N+ + +A+LS+L ATLTLP IA I Sbjct: 440 IEKGFHSTLWGFATIAVFMLIYYRVFGLISALSLGVNLFMLVAVLSMLQATLTLPGIAAI 499 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L +G+A+D+N+L+NERIREE R ++ G+ A++TI DSNIT LIA + L F Sbjct: 500 ALTLGMAIDANVLINERIREELRNGVPPHSAIQAGYQHAWATILDSNITTLIAGLALLIF 559 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 G G VRGFA+ L I+ SMF+A+ + R + K+ Sbjct: 560 GSGPVRGFAVVHCLGIMTSMFSAVLVSRGFVNLWYGRKRR 599 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 84/208 (40%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G A + + + I VGP + +E I KG + + Sbjct: 396 VQISGSMNAAEANDTALLLRAGSLAAPMNIIEERTVGPSLGKENIEKGFHSTLWGFATIA 455 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ I ++ F L + +L +++ + ++ L +AA+ +G +++ V++ Sbjct: 456 VFMLIYYRV-FGLISALSLGVNLFMLVAVLSMLQATLTLPGIAAIALTLGMAIDANVLIN 514 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + I + +++ I+ L + ++G + FA+ Sbjct: 515 ERIREELR---NGVPPHSAIQAGYQHAWATILDSNITTLIAGLALLIFGSGPVRGFAVVH 571 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + S++ ++ + Y + + Sbjct: 572 CLGIMTSMFSAVLVSRGFVNLWYGRKRR 599 >gi|254487569|ref|ZP_05100774.1| protein-export membrane protein SecF [Roseobacter sp. GAI101] gi|214044438|gb|EEB85076.1| protein-export membrane protein SecF [Roseobacter sp. GAI101] Length = 322 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 185/311 (59%), Gaps = 7/311 (2%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + R L+PD I F + G S + + ++ + FT GLNYGIDF+GG L ++ Sbjct: 1 MIRLKLVPDNTNIDFFKHAKLTFGASCVAVVLALAVWFTMGLNYGIDFRGGTTLRTQSDT 60 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKK 641 VD++ R+ L+ L++GDIS + +VR+Q Q G+ A ++ V+ Sbjct: 61 VVDVAAYRNALDPLELGDISISEVFDPTSDGTKHVAMVRIQSQEGEEAATPEMIANVETA 120 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + + P + E VGPK+S ELI+ + V S A+LIYIW+RF+W F++GA+ L Sbjct: 121 LKTVAPNIIFTSVESVGPKVSGELIQTAFLAVGASLGAILIYIWLRFEWQFSVGAVAALF 180 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 D+ T+G F++ I F+L +AA+LT+IGYS+ND VV++DR+R+N++ Y + RDL+ Sbjct: 181 HDVILTIGIFSILQIRFDLPVIAAILTIIGYSINDTVVIFDRLRENLRKY-KKMPLRDLM 239 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + S+NETL R++ TS ++++ + V GG VI F + +G++V SS+++A ++L Sbjct: 240 NLSVNETLSRTLMTSGTTLLALIALLVLGGDVIRGFVFAITWGVIVGTYSSVYVAKNVVL 299 Query: 822 FIYDWRAKNAR 832 F+ R + + Sbjct: 300 FLGVKRDWSKK 310 >gi|330446689|ref|ZP_08310341.1| export membrane protein SecF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490880|dbj|GAA04838.1| export membrane protein SecF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 315 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 165/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 L+ + FMR S+L SI + T GLN+G+DF GG + V P Sbjct: 1 MRELLNADKVVDFMRWSKVAFVFSLLMIAGSIGTIATKGLNWGLDFTGGTLIEVSFKEPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L ++R +LE GD QNF ++ +VRLQ + D + +++ Sbjct: 61 NLPLIRESLEKAGFGDAVVQNFGTARDVMVRLQPRD-DVKGEVLGNQIIDALKQGTAQSV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + ++I+ + +L+Y+ +RF+W A GA+ +L DI T+G Sbjct: 120 EMRRIEFVGPNVGDELAEAGGMAILIALLCILLYVSLRFEWRLAAGAVMSLAHDIIITVG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L +E +LT VAA+LT++GYS+ND +VV+DR+R+N + S ++++ SI++TL Sbjct: 180 IFSLLQVEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRK-ESPAEIMNNSISQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + V GGS+I FA+ + GI + SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFVLGGSMIHGFALALLIGITIGTYSSIYVASALALKLGITRE 297 >gi|289523403|ref|ZP_06440257.1| protein-export membrane protein SecF [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503095|gb|EFD24259.1| protein-export membrane protein SecF [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 298 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 159/297 (53%), Gaps = 7/297 (2%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 I FM+ R +G+S+ I S+ LL T GLN+GIDF GG+ + + P+ + Sbjct: 1 MFIKLKSDFNFMKYRKIALGLSLCLIISSLLLLATRGLNFGIDFAGGMLFQLEFDSPLSV 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 S +R++LE G Q + + + GD +++ + + Sbjct: 61 SEIRTSLERAGFGGAVIQLYSDRGVLIRVKSDREGDQK------KVLDSLRSSAGKDFRV 114 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 E+VGP + +L + + + + +AML YI IRF+ FA+GA+ L+ D+ TLG F Sbjct: 115 LRAEMVGPVVGSQLRKSAALATVFALLAMLAYITIRFRLRFAVGAVIALVHDVIITLGIF 174 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +L E ++ +A +LTL+GYS+ND +VV+DR+R+N+ ++F DL + SIN+ L R Sbjct: 175 SLTFQEISMPFIAGMLTLVGYSINDTIVVFDRVRENL-KNPKGMAFVDLFNSSINQVLSR 233 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ TS+ F VL + +WGG I F++ + GIVV SSI+IA +++ Sbjct: 234 TINTSLTTFFPVLALFLWGGKAISDFSMALLVGIVVGTYSSIYIAGTVVVEWNMRSR 290 >gi|313668906|ref|YP_004049190.1| protein-export membrane protein [Neisseria lactamica ST-640] gi|313006368|emb|CBN87831.1| putative protein-export membrane protein [Neisseria lactamica 020-06] Length = 617 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 166/506 (32%), Positives = 278/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGPDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K + L+ +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPAKLREASEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + +FM+V Y G + ++ N++ + +LS L ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VAVFMVVYYRLMGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R + ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ + Sbjct: 511 NERIREELRAGVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 84/208 (40%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + A+ Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 VFMVVYYRL-MGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ ++ + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 41.2 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L ++ + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIALTVAVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 ++ + LK+ GI M + N + + F D+ + D + L Sbjct: 47 ---------DQTRSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|316985261|gb|EFV64212.1| protein-export membrane protein SecD [Neisseria meningitidis H44/76] gi|325133877|gb|EGC56533.1| protein-export membrane protein SecD [Neisseria meningitidis M13399] gi|325139841|gb|EGC62373.1| protein-export membrane protein SecD [Neisseria meningitidis CU385] gi|325200706|gb|ADY96161.1| protein-export membrane protein SecD [Neisseria meningitidis H44/76] Length = 617 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 >gi|170718438|ref|YP_001783656.1| preprotein translocase subunit SecF [Haemophilus somnus 2336] gi|168826567|gb|ACA31938.1| protein-export membrane protein SecF [Haemophilus somnus 2336] Length = 322 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 158/307 (51%), Gaps = 5/307 (1%) Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 + + +I FM+ R+WG SI+ + +FT G N+G+DF GG + Sbjct: 5 TRNKKVHEYKGVILPFKLTPFMKYRYWGYAFSIIVTAVCFFFIFTKGFNWGLDFTGGTVI 64 Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 ++P DL+ VRS L+ I Q G ++ ++RL + V +K Sbjct: 65 DTHFSQPADLNKVRSTLKENGIESALVQTTGGVRDVMIRLPVV----ESSAEVGNKIKTI 120 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + + I + E VGP + EL + I + + + +L YI RF+W GA+ L Sbjct: 121 LNSLDEGLEIHSIEFVGPNVGEELTQGAIYATLATLLMLLGYIAFRFEWRLGTGAVIALA 180 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 D+ TLG F+ F IE +LT VAA+L+++GYS+ND +VV+DR+R+N + I ++I Sbjct: 181 HDVIVTLGVFSYFQIEMDLTFVAAILSVVGYSLNDSIVVFDRVRENFRKI-RRIDTVEII 239 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 D S+ +TL R++ TS+ V+ + +GG I SF++ + GI S+I+IA + L Sbjct: 240 DISLTQTLARTLMTSITTLFVVIALFAFGGPTIHSFSLALLIGIAFGTYSTIYIAITLAL 299 Query: 822 FIYDWRA 828 + R Sbjct: 300 DLGLKRE 306 >gi|84502988|ref|ZP_01001090.1| protein-export membrane protein SecF [Oceanicola batsensis HTCC2597] gi|84388733|gb|EAQ01604.1| protein-export membrane protein SecF [Oceanicola batsensis HTCC2597] Length = 322 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 116/305 (38%), Positives = 181/305 (59%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+PD I F R V +S L + S+ GLN+GIDF+GG + + +P Sbjct: 1 MRLKLVPDETKIDFFRRSRLFVLLSALLIVASVGATLVMGLNFGIDFRGGTTIRTESAQP 60 Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD+ R + L +GD + +VR+Q Q G+ +V+ V+ + Sbjct: 61 VDIGAYRDAIGDLGLGDITITEVFDPTFGADQNVAMVRIQAQEGEESVSAQVVADVEAAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 +VP + E VGPK+S ELI+ ++ V+++ +A+L YIW+RF+W FA+GA+ L+ Sbjct: 121 QGVVPDIRFVSVESVGPKVSGELIQTAVIAVVLAIMAVLFYIWLRFEWQFAVGAVAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 DI T+G F++F I F+L +AA+LT++GYS+ND VVV+DR+R+N++ + + +DL++ Sbjct: 181 DIVLTIGVFSVFQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKF-KQMPLKDLLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINETL R+V TS I+++ + V GG VI F M +GI+V SS+FIA+ ILL Sbjct: 240 VSINETLSRTVMTSGTTLIALIALIVLGGDVIRGFVFAMTWGIIVGTYSSVFIASAILLR 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|325135797|gb|EGC58409.1| protein-export membrane protein SecD [Neisseria meningitidis M0579] Length = 617 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 164/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM++ Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVIYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ I ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVIYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.1 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + L+ GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|308388793|gb|ADO31113.1| putative protein-export membrane protein [Neisseria meningitidis alpha710] gi|325129755|gb|EGC52564.1| protein-export membrane protein SecD [Neisseria meningitidis OX99.30304] Length = 617 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.1 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + L+ GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|16759386|ref|NP_455003.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763788|ref|NP_459403.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142843|ref|NP_806185.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179020|ref|YP_215437.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615407|ref|YP_001589372.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161936226|ref|YP_151512.2| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167551784|ref|ZP_02345537.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992255|ref|ZP_02573353.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232379|ref|ZP_02657437.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237520|ref|ZP_02662578.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240228|ref|ZP_02665160.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261162|ref|ZP_02683135.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465495|ref|ZP_02699377.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818984|ref|ZP_02830984.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443856|ref|YP_002039650.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447677|ref|YP_002044442.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472025|ref|ZP_03078009.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738306|ref|YP_002113441.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250831|ref|YP_002145391.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197266031|ref|ZP_03166105.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198246035|ref|YP_002214362.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389608|ref|ZP_03216219.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926969|ref|ZP_03218171.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351720|ref|YP_002225521.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855890|ref|YP_002242541.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213163216|ref|ZP_03348926.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427842|ref|ZP_03360592.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|224582245|ref|YP_002636043.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911457|ref|ZP_04655294.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825051|ref|ZP_06544403.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25306314|pir||AH0552 protein-export membrane protein SecF [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418912|gb|AAL19362.1| preprotein translocase, IISP family, membrane subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501677|emb|CAD08864.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Typhi] gi|29138475|gb|AAO70045.1| export membrane protein SecF [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126653|gb|AAX64356.1| preprotein translocase, IISP family, membrane subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364771|gb|ABX68539.1| hypothetical protein SPAB_03178 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402519|gb|ACF62741.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405981|gb|ACF66200.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458389|gb|EDX47228.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713808|gb|ACF93029.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631641|gb|EDX50161.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214534|gb|ACH51931.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244286|gb|EDY26906.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289511|gb|EDY28874.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940551|gb|ACH77884.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602053|gb|EDZ00599.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323634|gb|EDZ08829.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271501|emb|CAR36319.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323440|gb|EDZ11279.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329545|gb|EDZ16309.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333410|gb|EDZ20174.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340136|gb|EDZ26900.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344003|gb|EDZ30767.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349782|gb|EDZ36413.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707693|emb|CAR31977.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466772|gb|ACN44602.1| protein export protein SecF [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245691|emb|CBG23487.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992118|gb|ACY87003.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157020|emb|CBW16503.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320084684|emb|CBY94475.1| Protein-export membrane protein secF [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225133|gb|EFX50194.1| Protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322713479|gb|EFZ05050.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|332987356|gb|AEF06339.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 323 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR FW GIS L I +I ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q ++V Sbjct: 65 PAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++++ I++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|194290676|ref|YP_002006583.1| preprotein translocase subunit SecF [Cupriavidus taiwanensis LMG 19424] gi|193224511|emb|CAQ70522.1| Protein-export membrane protein [Cupriavidus taiwanensis LMG 19424] Length = 323 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 158/305 (51%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS L ++ L+ GL+ I+F GG + V + D Sbjct: 1 MEFFRIRRDIPFMKHALIFNVISFLTFAAAVFFLWQKGLHLSIEFTGGTVMEVSYQQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ---PGDSVAQTRVLEMVKKKITEIVP 647 L +R + L D+ QNF ++ ++RL Q G + E V +T P Sbjct: 61 LEKIRGQVSKLGYTDVQVQNFGTSRDVMIRLPLQKGPDGKPATSAQQSEQVMGALTAASP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G++ ++ I ++IY+ RF+W FA+ I + DI Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLCVIIGIVIYLSFRFEWKFAVAGIIANLHDIVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AA+L ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAAILAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + VL M +GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TMSRTIITHGSTEMMVLSMFFFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|126668570|ref|ZP_01739524.1| protein-export membrane protein SecF [Marinobacter sp. ELB17] gi|126626975|gb|EAZ97618.1| protein-export membrane protein SecF [Marinobacter sp. ELB17] Length = 317 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 90/289 (31%), Positives = 156/289 (53%), Gaps = 6/289 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM R +SI + +I LL GLN+G+DF GG + + L +R+ L Sbjct: 9 FDFMGFRKIATILSITLLVLAIGLLAVRGLNFGMDFTGGTSVEFEYQQAPALPEIRTALS 68 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 QNF +K LVRL D + + + +T + ++E +G Sbjct: 69 DAGYEQFVVQNFGSDKTVLVRLSESGNDM-----LAQEITSTLTAGGAELKLISSEFIGS 123 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ EL +G++I+ + +LIY+ +RF++ F + A+ L D+ LG F+LF F+ Sbjct: 124 QVGEELKEDSGLGMLIALLVVLIYVGMRFQFKFGIAAVLPLAHDVIIVLGIFSLFQWTFD 183 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AA+L +IGYS+ND +VV DR+R+N + S+ ++I+ SI++T+ R++ TS Sbjct: 184 LTVLAALLAIIGYSLNDTIVVADRIRENFRTMRVGDSW-EVINTSIHQTISRTINTSGTT 242 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + V+GG I FA+ + G+VV SSI+++A +L+ + R Sbjct: 243 LVVLIALYVFGGEAINGFALALIIGVVVGTYSSIYVSANLLIALGVSRE 291 >gi|268592076|ref|ZP_06126297.1| protein-export membrane protein SecF [Providencia rettgeri DSM 1131] gi|291312471|gb|EFE52924.1| protein-export membrane protein SecF [Providencia rettgeri DSM 1131] Length = 322 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 164/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR ISI+ I S ++ G N+G+DF GG + + ++ Sbjct: 5 YTVEQLNYGRKVYDFMRWDNVAFSISIVLLIASFVIIGVKGFNWGLDFTGGTVIEINLSQ 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R +L + D QNF ++ ++R+ G Q E++ + Sbjct: 65 PADLDKIRDSLSNSNHKDPLIQNFGSSRDIMIRIPPIEGT-AGQEVGKEIITIINQSVDD 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + EL + G + ++ + I +LIY+ RF+W A GA+ +L D+ T Sbjct: 124 KATVKRIEFVGPSVGAELAQTGALALLTALICILIYVGFRFEWRLAAGAVLSLAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE ++T VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 LGILSLFHIEIDMTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLLVVLMLYLFGGAMLEGFSLVMLIGVTIGTISSIYVASALALKMGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|156935042|ref|YP_001438958.1| preprotein translocase subunit SecF [Cronobacter sakazakii ATCC BAA-894] gi|156533296|gb|ABU78122.1| hypothetical protein ESA_02893 [Cronobacter sakazakii ATCC BAA-894] Length = 323 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 85/301 (28%), Positives = 165/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W IS L + SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFAISGLLLVASIVVMGVRGFNWGLDFTGGTVIEIGLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL V+R +L + QNF ++ +VR+ G++ Q ++V Sbjct: 65 PADLDVMRESLVKAGFEEPLLQNFGSSRDIMVRMPPAQGETGGQALGTKVVNVINQATGQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++++ +++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 MGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG+++ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLQRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|89094742|ref|ZP_01167677.1| protein-export membrane protein SecD [Oceanospirillum sp. MED92] gi|89080996|gb|EAR60233.1| protein-export membrane protein SecD [Oceanospirillum sp. MED92] Length = 617 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 157/523 (30%), Positives = 269/523 (51%), Gaps = 37/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H +LEVD V+ L+ Y+ E++ L++E + Sbjct: 105 NLAPTTPDWLTSIGAGPMKLGLDLRGGVHFLLEVDLPKAVSQKLENYASEIKGRLREEKL 164 Query: 87 GVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 + + + F ++ + Q I Sbjct: 165 RYRKLETMEDGSLAVKFPKQEVRDQAVSLLRGEYQEFLLSAED--------RDGAFYAVI 216 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 L++ + + ++AI+Q++ +R R++++G++E +QR G +RI++QLPG QD + +++ Sbjct: 217 TLTEQAVRDIETYAIKQNLTTLRNRVNELGVAEPLVQRQGRNRIVVQLPGIQDTAAAKKI 276 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 +G TA + F V R G + +E V I G +++ A A+FD Sbjct: 277 IGKTATLEFRLEA-RPGASSARTEVYEFRSELGRKATLEKDVIIKGDNVSNAQASFDENG 335 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL-----------------------AVVLDGRV 302 +P V+I+ D G T+D + + + V + Sbjct: 336 -QPQVNITLDSKGGELMARTTKDAVQRRMAVLFVEDKERTVHKTVDGEPVVEKVRYTEKK 394 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + Q++ + +I+G + LA +LRAG+L + VEER VG LG+ +I Sbjct: 395 IISLATIQSVLGSQFRITGLDGAGESSELALLLRAGALAAPIYFVEERTVGPSLGAQNIE 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 G ++ GL L++LFMI+ Y +GL+A+ ++ LN++L +A++S+L ATLTLP IAGIVL Sbjct: 455 TGVTSVQIGLALVLLFMILYYRVFGLLANVALSLNLMLLVAVMSMLSATLTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ RI+EE + ++ GF A +TIFD+NIT L+A V+LF G Sbjct: 515 TVGMAVDANVLIFSRIKEELKNGLPPQSAIHAGFKGATTTIFDANITTLLAAVILFAMGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ + IL SMFTAI + RA++ +++ + I Sbjct: 575 GPVKGFAVTLSVGILTSMFTAILVTRALVNLTYGGRQVTKLSI 617 Score = 156 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 92/247 (37%), Gaps = 7/247 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 ++ VD V + + IS R+ G + L + Sbjct: 372 ERTVHKTVDGEPVVEKVRYTEKKIISLATIQSVLGSQFRITGLDGAGESSELALLLRAGA 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + VGP + + I G+ V I +L+++ + ++ F L A L Sbjct: 432 LAAP---IYFVEERTVGPSLGAQNIETGVTSVQIGLALVLLFMILYYRV-FGLLANVALS 487 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ + ++ L +A ++ +G +V+ V+++ R+++ +K + + I Sbjct: 488 LNLMLLVAVMSMLSATLTLPGIAGIVLTVGMAVDANVLIFSRIKEELK---NGLPPQSAI 544 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ ++ + + G + FA+ ++ GI+ + ++I + ++ Sbjct: 545 HAGFKGATTTIFDANITTLLAAVILFAMGTGPVKGFAVTLSVGILTSMFTAILVTRALVN 604 Query: 822 FIYDWRA 828 Y R Sbjct: 605 LTYGGRQ 611 >gi|240013497|ref|ZP_04720410.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae DGI18] gi|240120569|ref|ZP_04733531.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID24-1] Length = 617 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 278/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K + L+ +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.8 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|237739617|ref|ZP_04570098.1| protein translocase subunit secf [Fusobacterium sp. 2_1_31] gi|229423225|gb|EEO38272.1| protein translocase subunit secf [Fusobacterium sp. 2_1_31] Length = 318 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 159/297 (53%), Gaps = 3/297 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSVV 594 + + +R + + +SI+ + SI + F GLNYGIDF GG + ++ V L+ + Sbjct: 1 MKVNLHIIRKMKYYLSVSIILVVLSIIVFFAKGLNYGIDFTGGNLFQLKYNDKKVTLTEI 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 NL+ L + + + + V + E+ + Sbjct: 61 NDNLDKLSEKLPQVNSNSRKVQISEDGTVILRVPELKEEDKKEVLNSLQELGAFNL-DKE 119 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 + VG I +L + I + I AI +++YI +RF++ FA+G I +L+ DI +GF AL Sbjct: 120 DKVGASIGDDLKKSAIYSLGIGAILIVLYITLRFEFSFAIGGILSLLHDIIIAVGFIALM 179 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSV 773 G E + +AA+LT++GYS+ND +V+YDR+R+N+ + +T + + D +D+S+N+T RS+ Sbjct: 180 GYEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRRHTKNWTLEDCMDESVNQTAIRSL 239 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 TS+ SV+ + ++GG+ + +F + + GI+ SSIFIA PI+ + + N Sbjct: 240 NTSITTLFSVIALLIFGGASLKTFIMTLLIGILAGTYSSIFIATPIVYILNKRKGNN 296 >gi|90579384|ref|ZP_01235194.1| protein export protein SecD [Vibrio angustum S14] gi|90440217|gb|EAS65398.1| protein export protein SecD [Vibrio angustum S14] Length = 617 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 157/536 (29%), Positives = 288/536 (53%), Gaps = 42/536 (7%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L + P++L + LGLDLRGG H ++EVD D ++ L Sbjct: 100 VVALNLAASTPSWLESIGAS---------PMKLGLDLRGGVHFLMEVDMDAAMDKLLGQQ 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + R+ L++E I ++ + ++ + + D E + KL+ D Sbjct: 151 EETFRTELREEKIRYRAISKTKDSVQVRLRDEAQLEQA--------ELALEKLHPDMLFT 202 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ ++ + ++ ++A++Q++ I+R R++++G++E +QR G++RI+++L Sbjct: 203 TSKINGRYVLTAKFTEERLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQGANRIVVEL 262 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248 PG QD +R +++LG TA + F +V G DG +++ +V Sbjct: 263 PGVQDTARAKEILGATATLEFREVDSKADLAAAAAGRVPAGSEVKMTRDGRPAVLKKRVI 322 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------ 302 ++G H+ ++++ D +P V+IS D G + +++NIGK +A V Sbjct: 323 LAGSHITDSSSSADEYG-RPQVNISLDTEGGSKMTAFSKNNIGKLMATVFTEYKDSGKRT 381 Query: 303 ------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 + Q+ +I+G + A L+ +LRAG+L ++IVEER Sbjct: 382 PEGKVILTKHEEVINQATIQSALGRSFRITGIDSQAEAHNLSLLLRAGALIAPISIVEER 441 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG- 409 +G +G +I G A + G+V ++LF ++ Y +G++A+ ++ +N++L + ++S++ Sbjct: 442 TIGPSMGQQNIDMGVQACIWGMVAVMLFTLLYYRGFGMIANLALIMNLVLIIGIMSMIPG 501 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R+ +S ++ G+ A+STI D+NIT Sbjct: 502 ATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIQQGYGNAFSTIADANIT 561 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LI ++LF G GA++GFA+T+ + IL SMFTAI RA++ I K++ + I Sbjct: 562 TLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNLIYGGKRVDKLSI 617 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 82/174 (47%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + ++ I G+ I +A++++ + ++ F + A LI+++ +G ++ Sbjct: 442 TIGPSMGQQNIDMGVQACIWGMVAVMLFTLLYYR-GFGMIANLALIMNLVLIIGIMSMIP 500 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G L +A ++ +G +V+ V++++R+R+ ++ S + I + Sbjct: 501 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQGYGNAFSTIAD 557 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I+ + + G I FA+ ++ GI+ + ++I ++ IY + Sbjct: 558 ANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNLIYGGKR 611 Score = 42.8 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 79/290 (27%), Gaps = 39/290 (13%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ IGLL ALPN + + A G+ + + Sbjct: 4 RYPLWKNLMVLFALIIGLLYALPNVYGEDPAIQITGAR-------------GASVNM--- 47 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + LKK I S + + + F D+ + + D Sbjct: 48 ----------SALDTVTEDLKKNKIPYKSAVFEKGSVLVRFNDTDTQISARDI------- 90 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 LN + + +V + ++ + ++ + + ++ + + Sbjct: 91 ----LNSELGDDYVVALNLAASTPSWLESIGASPMKLGLDLRGGV--HFLMEVDMDAAMD 144 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + LG + ++ R R + T + ++ + + D Sbjct: 145 KLLGQQEETFRTELREEKIRYRAISKTKDSVQVRLRDEAQLEQAELALEKLHPDMLFTTS 204 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + + ++ + I + + E G Sbjct: 205 KINGRYVLTAKFTEERLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQG 254 >gi|82542897|ref|YP_406844.1| preprotein translocase subunit SecF [Shigella boydii Sb227] gi|81244308|gb|ABB65016.1| SecF [Shigella boydii Sb227] gi|332098504|gb|EGJ03470.1| protein-export membrane protein SecF [Shigella boydii 3594-74] Length = 323 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L I +I ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q +++K Sbjct: 65 PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + +++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLTQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|126736000|ref|ZP_01751744.1| protein-export membrane protein SecF [Roseobacter sp. CCS2] gi|126714557|gb|EBA11424.1| protein-export membrane protein SecF [Roseobacter sp. CCS2] Length = 297 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 104/282 (36%), Positives = 171/282 (60%), Gaps = 7/282 (2%) Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG--- 613 + + GLN+GIDF GG + + PVD+ R+ LE+L++GDIS + Sbjct: 4 MVIAFASFLIQGLNFGIDFTGGTSIRTDSAIPVDVGAYRAALETLELGDISIAEVNDVLF 63 Query: 614 ---EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670 + LVR+Q Q GD + +E ++ + I P + E VGPK+S ELI+ I Sbjct: 64 DEDQHVALVRVQAQEGDERIASETIEAIQSALRTIDPDMAFPSVESVGPKVSGELIQTSI 123 Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 + V ++ IA+L+YIW+RF+W FA+GA+ L D+ T+G F+ I+F+L +AA+LT++ Sbjct: 124 IAVALAVIAILLYIWLRFEWQFAVGAVLALSHDVILTIGIFSELQIKFDLAIIAALLTIV 183 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 GYS+ND V+V+DR+R+N++ Y +++++ SINETL R++ TS+ +++L + G Sbjct: 184 GYSINDTVIVFDRVRENLRKYKKK-DLKEVLNVSINETLSRTLMTSVTTMLALLALFTLG 242 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G VI F M +G+++ SSIF+A+ ILL + R + + Sbjct: 243 GDVIRGFVFAMMWGVLIGTYSSIFVASAILLVLGVKRDWSKK 284 >gi|157828026|ref|YP_001494268.1| preprotein translocase subunit SecF [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932724|ref|YP_001649513.1| preprotein translocase subunit SecF [Rickettsia rickettsii str. Iowa] gi|166977545|sp|A8GQT5|SECF_RICRS RecName: Full=Protein-export membrane protein secF gi|27312011|gb|AAO00969.1| protein export membrane protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800507|gb|ABV75760.1| preprotein translocase subunit SecF [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907811|gb|ABY72107.1| protein translocase subunit [Rickettsia rickettsii str. Iowa] Length = 308 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 174/306 (56%), Gaps = 2/306 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + L+P+ I FM + SI+ S+ S + + N+GIDF GGI + V Sbjct: 1 MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R L L IG++ QNF E++ +R + + + + Sbjct: 61 DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSNSEENLMKNIELIKGSLQSNF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S +A+++YIW+RF+WYF G + L+ D+ Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGFGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ SI Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF+I + FGI+V SSIFI+APIL + Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSILVFFGIIVGTYSSIFISAPILTMFVN 298 Query: 826 WRAKNA 831 + Sbjct: 299 RKFNKK 304 >gi|319778542|ref|YP_004129455.1| Protein-export membrane protein SecD [Taylorella equigenitalis MCE9] gi|317108566|gb|ADU91312.1| Protein-export membrane protein SecD [Taylorella equigenitalis MCE9] Length = 629 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 183/520 (35%), Positives = 289/520 (55%), Gaps = 28/520 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + LL A P++L N ++LGLDLRGG H +L+VD + Sbjct: 109 VVALNLLSATPSWLQSLGA---------NPMALGLDLRGGVHFLLQVDMKGALKSRYNSL 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ELR+ + I S++ + IT F++ + D + L + Sbjct: 160 NTELRTLFRDSKITAESIQLEGSTITALFSNEKDANKAKDVIRQRL--------PELTTQ 211 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + ++ ++ N + +V A++Q++ + RI+++G++E IQ+ G+ RI++QL Sbjct: 212 YAEQNGKHVLTSTIAPNEVSRVQDTALKQNIVTLHNRINELGVAEPIIQQQGNDRIVVQL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKV 247 PG QD ++ + +LG TA + V + + FG+ + +DG L+ +V Sbjct: 272 PGVQDIAKAKDILGRTATLELRLVDDSPTALASLASGVVPFGLEKFKGTDGRDILLRRQV 331 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVL 303 ++G +L A A DP + P V++S D G+R F +VTRDNI K + G+V+ Sbjct: 332 ILTGENLEDAQAGLDPNDNSPAVNLSLDSKGSRIFRDVTRDNINKRMAIVLFEKGKGQVV 391 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 T+P I IP+G+ ISG+ T A +A +LRAGSL ++I+EER +G LG D+I K Sbjct: 392 TSPTIRSEIPNGQVMISGHMTSTEAADIALLLRAGSLAAPMSIIEERTIGPSLGEDNIKK 451 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G + G VLI LFMI+ Y G+ + + NV+L LA+LSL+ ATLTLP IA I L Sbjct: 452 GFRSTWVGFVLIALFMILYYRLIGVFSTLGLAFNVLLLLAVLSLIQATLTLPGIAAIALT 511 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF-FFGG 482 +G+A+D+N+L+NERIREE R+ + ++++GF +A++TIFDSNIT+LI + L F G Sbjct: 512 LGMAIDANVLINERIREELREGVNPQQAINIGFEKAWATIFDSNITSLIVGIALLAFSGP 571 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G +RGFA+ L IL SMF+A+ VRA++ KK Sbjct: 572 GPIRGFAVVHVLGILTSMFSAVVGVRALVNLWYGRKKKLK 611 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 85/214 (39%), Gaps = 5/214 (2%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G + + + + +I +GP + + I+KG + + + Sbjct: 404 QVMISGHMTSTEAADIALLLRAGSLAAPMSIIEERTIGPSLGEDNIKKGFRSTWVGFVLI 463 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 +++ + ++ + + L ++ L +L L +AA+ +G +++ V++ Sbjct: 464 ALFMILYYRLI-GVFSTLGLAFNVLLLLAVLSLIQATLTLPGIAAIALTLGMAIDANVLI 522 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG-SVIGSFAI 799 +R+R+ ++ ++ + I+ + +++ + I + + + G I FA+ Sbjct: 523 NERIREELRE---GVNPQQAINIGFEKAWATIFDSNITSLIVGIALLAFSGPGPIRGFAV 579 Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++ ++ Y + K I Sbjct: 580 VHVLGILTSMFSAVVGVRALVNLWYGRKKKLKNI 613 Score = 43.5 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 29/124 (23%), Gaps = 29/124 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + GL LPN G + +++ Sbjct: 3 RYPLWKYLIVLVALIFGLTYTLPNIF-------------------------GQTVAVQIS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI----QNKITLSFADSRFKENIADKVTL 117 + LK+ I + + N I + F + + Sbjct: 38 SLNVTKKVDANLLSFAEQTLKQANIPFENSQIQANGPNNTIRIRFNSPNEQIQARGILER 97 Query: 118 FLQG 121 L Sbjct: 98 ALNP 101 >gi|301154788|emb|CBW14251.1| SecYEG protein translocase auxillary subunit [Haemophilus parainfluenzae T3T1] Length = 324 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 94/309 (30%), Positives = 152/309 (49%), Gaps = 5/309 (1%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 + +FM+ RF G SI+ S+ + T G N+G+DF GG+ Sbjct: 6 KDKNGHFIREVNGIKLPFPLTEFMKVRFVGYTFSIILMAISLFFIVTKGFNWGLDFTGGV 65 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 ++P DL +R L I Q ++ ++RL + + + VK Sbjct: 66 VFDTHFSQPADLEKIRGTLNQNGIASPIVQTTGSVQDVMIRLPA----DNNDSAIGDHVK 121 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + I P I + E VGP + EL + + + + MLIY+ RF+W G I + Sbjct: 122 SMLQTIDPNIHINSIEFVGPNVGEELAQGAVYATLATLAMMLIYVGSRFEWRLGFGGIAS 181 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L D+ TLG F+ +E +LT VAA+L+++GYS+ND +VV+DR+R+N + + D Sbjct: 182 LAHDVVITLGVFSALQVEMDLTFVAAILSVVGYSINDSIVVFDRVRENFRKIRRVETI-D 240 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +ID S+ +TL R++ TS+ + V+ + +GG I +F++ + GI SSIFIA I Sbjct: 241 IIDISLTQTLSRTIMTSLTTLLVVIALFFFGGPSIHNFSLALLIGIGFGTYSSIFIAIAI 300 Query: 820 LLFIYDWRA 828 I R Sbjct: 301 AYDIGLRRE 309 >gi|283784227|ref|YP_003364092.1| protein-export protein [Citrobacter rodentium ICC168] gi|282947681|emb|CBG87236.1| protein-export protein [Citrobacter rodentium ICC168] Length = 323 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L + SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVWDFMRWDYWAFGISGLLLVASIVVMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R LE D QNF + +VR+ G + Q +++ Sbjct: 65 PAEMDVMREALEKAGFVDPLLQNFGSSHDIMVRMPPTEGANGGQVLGSKVLSVINESTNQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + I++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALLAALISILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLFLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|330993543|ref|ZP_08317478.1| Protein-export membrane protein secD [Gluconacetobacter sp. SXCC-1] gi|329759573|gb|EGG76082.1| Protein-export membrane protein secD [Gluconacetobacter sp. SXCC-1] Length = 516 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 197/529 (37%), Positives = 310/529 (58%), Gaps = 20/529 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + + +C IGL + LPN + Q + +P +I LGLDLRGGS+L+L+V Sbjct: 2 MYYSRLRMASVIGVCLIGLALCLPNVIRQPVAS-----LPWRQIHLGLDLRGGSYLLLQV 56 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS--FADSRFKENIADKVTLF 118 D + L+ DE R L K +G ++ + +T + + + Sbjct: 57 DMNSVAADRLRGLQDETRQTLLKNSLGYRNLATTAHGVTFTPRTPEETQPD--------- 107 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 L+ + + P + + + +I++ LS + Q A+ QS+EI+R+RID G + Sbjct: 108 LKALRAMPMNVPGEFTVEQGGDGQITLTLSADAARQRAYDAVTQSIEIVRRRIDATGAID 167 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN---NSKKGFMFGVRFLRD 235 I R G RI+++LPG DP R++ LLGTTAKM+FH V + +S + + D Sbjct: 168 PEITRQGEDRIIVELPGISDPERVKNLLGTTAKMTFHLVADSAIGSSVPPPGVDLLPMSD 227 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 G V V++ G L A+A+ D ++ + V+ +FD GA+ F +VTR N+GK A Sbjct: 228 GQG-TLPVFSHVDVDGADLTNASASIDQQSGEWAVNFTFDSAGAQEFGDVTRANVGKRFA 286 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLD +V+ APVI AI G QI+G F+ + A +A +LRAG+LP LN++E+R++G Sbjct: 287 IVLDNKVIEAPVIRTAITGGSGQITGGFSAQQATDMALLLRAGALPAPLNVIEQRSIGPS 346 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG+DSI G ++ AG VL++ FM + YG++G A+ ++ N++L A+LSL ATLTLP Sbjct: 347 LGADSIRAGGYSLAAGFVLVIAFMALFYGRFGWYANIALLANLVLMTAILSLFEATLTLP 406 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 +AG++L +G+AVD+NIL+NERIREE + +S ++ GF RA +TI DSN TAL+A V Sbjct: 407 GMAGMLLTLGMAVDANILINERIREEVARGRSALQAMQAGFERATATIVDSNATALLAHV 466 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +LF FG G VRGFA+T+ + I+ ++FT + + R +M+ + ++ Sbjct: 467 MLFVFGTGPVRGFALTITIGIVTTLFTTLLLSRMLMVRWYARTRPSTLP 515 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 91/262 (34%), Gaps = 10/262 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---- 629 G + + ++ + + ++R G Sbjct: 254 QQSGEWAVNFTFDSAGAQEFGDVTRANVGKRFAIVLDNKVIEAPVIRTAITGGSGQITGG 313 Query: 630 --AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 AQ + + + + +GP + + IR G + + ++ ++ + Sbjct: 314 FSAQQATDMALLLRAGALPAPLNVIEQRSIGPSLGADSIRAGGYSLAAGFVLVIAFMALF 373 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + F A L+ ++ +LF L +A +L +G +V+ +++ +R+R+ Sbjct: 374 YG-RFGWYANIALLANLVLMTAILSLFEATLTLPGMAGMLLTLGMAVDANILINERIREE 432 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + S + V ++ A ++ + + V+G + FA+ + GIV Sbjct: 433 VA---RGRSALQAMQAGFERATATIVDSNATALLAHVMLFVFGTGPVRGFALTITIGIVT 489 Query: 808 AASSSIFIAAPILLFIYDWRAK 829 +++ ++ +++ Y Sbjct: 490 TLFTTLLLSRMLMVRWYARTRP 511 >gi|256828492|ref|YP_003157220.1| protein-export membrane protein SecD [Desulfomicrobium baculatum DSM 4028] gi|256577668|gb|ACU88804.1| protein-export membrane protein SecD [Desulfomicrobium baculatum DSM 4028] Length = 531 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 190/538 (35%), Positives = 294/538 (54%), Gaps = 23/538 (4%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + W +L + + + L+ LP+ P + +P + I LGLDL+GG HL L V Sbjct: 1 MGSLRWRALLAAFVIFLALIHVLPSI-PSVRNSSLGALLPGDEIGLGLDLKGGIHLTLGV 59 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA--DKVTLF 118 D D ++ + +LR +++ I V R + ++ L F + ++ + + Sbjct: 60 DLDAALSNAVTSIGQDLRLEAREKKILVLRPRLLDSR-RLEFTLLKQEQRAELDELLGSR 118 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + D + + ++ + + + ++Q+++ IR RIDQ G++E Sbjct: 119 FATMQIISAEDGG------NGQLRYVLGVTPDYVKYLQDLTMDQALKTIRNRIDQFGVAE 172 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-- 236 I++ +RI++QLPG DP R ++G TA + F V + + G Sbjct: 173 PDIRKQQGNRIIVQLPGLDDPKRAINIIGRTAHLEFKLVDDGADVQAAVAGTVPAESELA 232 Query: 237 ----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 +++ +V ++G ++ A F + V ++F+ G+R F EVT Sbjct: 233 YMQDKRGVSEVKTPIVLKSEVVLTGEYITDANVQF-DSYGQAYVGMNFNARGSRIFEEVT 291 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 NI K LA+VLDG V +APVI I G+A I+G FT E A LA +LRAGSLP +NI Sbjct: 292 GANIKKRLAIVLDGTVHSAPVIQDRIGGGRASITGQFTTEEAHDLAVVLRAGSLPAPVNI 351 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 +EER+VG LG +SI KG A + G +++V+FM + Y + GL+A F I L+V L LA L+ Sbjct: 352 LEERSVGPSLGQESIDKGMMAALIGGLMVVVFMSIYYRRAGLIAAFEIILDVFLILAGLA 411 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 GATLTLP IAGI+L +G+AVD+N+L+ ERIREE R +SV +++ GFSRA TI DS Sbjct: 412 AFGATLTLPGIAGIILTLGMAVDANVLIYERIREELRHGESVAAAINNGFSRATQTIIDS 471 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 N+T +IA V+L+ FG G VRGFA+T+ L IL SMFTAI + R + ++ + Sbjct: 472 NVTTIIAAVILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRIFFDSWLARRQPGTQP 529 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 84/174 (48%), Gaps = 4/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + +E I KG++ +I + +++++ I ++ L A +ILD+ L A FG Sbjct: 356 SVGPSLGQESIDKGMMAALIGGLMVVVFMSIYYR-RAGLIAAFEIILDVFLILAGLAAFG 414 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+R+ ++ S I+ + + + Sbjct: 415 ATLTLPGIAGIILTLGMAVDANVLIYERIREELR---HGESVAAAINNGFSRATQTIIDS 471 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 ++ I+ + + +G + FA+ + GI+ + ++IF++ R Sbjct: 472 NVTTIIAAVILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRIFFDSWLARRQP 525 >gi|161869539|ref|YP_001598706.1| preprotein translocase subunit SecD [Neisseria meningitidis 053442] gi|161595092|gb|ABX72752.1| protein-export membrane protein [Neisseria meningitidis 053442] Length = 617 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 82/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ +++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRV---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 >gi|121535590|ref|ZP_01667397.1| protein-export membrane protein SecF [Thermosinus carboxydivorans Nor1] gi|121305830|gb|EAX46765.1| protein-export membrane protein SecF [Thermosinus carboxydivorans Nor1] Length = 303 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 89/294 (30%), Positives = 149/294 (50%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + + R+W +S L I + + G N GIDF GG L + RPV ++ VR Sbjct: 1 MKFDIIGKRYWWFALSALVIIPGLVSMAVQGFNLGIDFTGGTLLDMKFARPVTVAEVRDV 60 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L+ + + + Q V V + + + I E V Sbjct: 61 LKDYHLENSTIQLATVAAQTEASPNVFIRTQVLGEEERRAVLSGLEQKLGKFDILRIEKV 120 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 G I EL R+ ++ V +++ M++YI RF++ FA+ I L+ D+ LG F+L E Sbjct: 121 GAVIGSELTRQAVLAVAAASVLMVLYITYRFEFKFAISGIIALLHDVLVVLGVFSLLQKE 180 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + + VAA+LT+IGYS+ND +V++DR+R+N+K + S S +L+++SI +T+ RS+YT + Sbjct: 181 VDASFVAAILTIIGYSINDTIVIFDRIRENLKTHRKSESLAELVNRSIWQTMTRSIYTVL 240 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + L + +GG +FA+ + GI A SSIF A+PI + + + Sbjct: 241 TVLFAALSLYFFGGETTKNFALALIIGITSGAYSSIFNASPIWVTWKEIEERRR 294 >gi|262371657|ref|ZP_06064936.1| protein-export membrane protein SecD [Acinetobacter junii SH205] gi|262311682|gb|EEY92767.1| protein-export membrane protein SecD [Acinetobacter junii SH205] Length = 633 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 158/535 (29%), Positives = 275/535 (51%), Gaps = 50/535 (9%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDLRGG H +LEVD D ++ ++ + +LR + I Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRDNKI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ N IT+ FA++ ++ AD + + L +T + + Sbjct: 163 KFNNLALNNNTITVQFANTTDRDAAADFLRRNGNEF--------TQQALASTDGALLKLN 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ S+A+ Q++ +R RI+++G++E+ +Q GS+RI+++LPG QD + +++L Sbjct: 215 YTDVGRQEIQSYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVL 274 Query: 207 GTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 G TA + F V +N + G Q L+ ++G Sbjct: 275 GRTANLEFRLVADSNDQYIDPYTGKYNGQPLPPGTELFAYESLDSGRQLLLNRNRILTGE 334 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294 + A++ F + V+I+ D G + + TR+ +GK + Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDTAGGKLMADATRNAVGKRMAVLFIENKQKISYVTDPA 394 Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 V+ QA+ + +I+G + + A LA MLRAG+L + V Sbjct: 395 TGTQTEVRTPYTESVVINAATIQAVLGSQFRITGLDSPQEAAELALMLRAGALAAPMYFV 454 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER VG LG ++I G + G +L+ ++M+V + +G++A+F++ N+ + L ++S Sbjct: 455 EERVVGPSLGQENIDAGVLSTQIGFILVAIWMVVFFRLFGVIANFALVFNLAMILTVMSW 514 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 LGA+LTLP IAGIV+GIG+AVD+N+L+ ERIREE S ++ G+ RAY+TIFDSN Sbjct: 515 LGASLTLPGIAGIVIGIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +T I +LF G G ++GFA+T+ + I+ SMFTAI++ RA++ I ++ + Sbjct: 575 LTTFIVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLIYGKRRNLT 629 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 4/245 (1%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 D + + N + L G Q + + + Sbjct: 391 TDPATGTQTEVRTPYTESVVINAATIQAVLGSQFRITGLDSPQEAAELALMLRAGALAAP 450 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +VGP + +E I G++ I I + I++ + F+ F + A L+ ++ L Sbjct: 451 MYFVEERVVGPSLGQENIDAGVLSTQIGFILVAIWMVVFFRL-FGVIANFALVFNLAMIL 509 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + G L +A ++ IG +V+ V++ +R+R+ M S + I + Sbjct: 510 TVMSWLGASLTLPGIAGIVIGIGMAVDANVLICERIREEMLW---GASPKQAIVAGYDRA 566 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++ FI + G I FA+ + GIV + ++I + I+ IY R Sbjct: 567 YNTIFDSNLTTFIVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLIYGKRR 626 Query: 829 KNARI 833 ++ Sbjct: 627 NLTKL 631 Score = 42.8 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 18/44 (40%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44 MR W +L ++ I L ALP+ P + A +I Sbjct: 1 MRYPAWKYLLILVVLVISTLYALPSLYPDEPAVQISGAKAGTQI 44 >gi|237808772|ref|YP_002893212.1| protein-export membrane protein SecF [Tolumonas auensis DSM 9187] gi|237501033|gb|ACQ93626.1| protein-export membrane protein SecF [Tolumonas auensis DSM 9187] Length = 314 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 163/299 (54%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F L+ I FMR S + + SI + T G N+G+DF GG + ++P Sbjct: 1 MFQLLKPGHTIPFMRLALPSTIFSCILILLSIFTIATKGFNWGLDFTGGTIAELKFSKPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL VVRS L + Q + K+ ++R+ P + Q ++ + V+K +EI Sbjct: 61 DLDVVRSALNKQGLEGAVVQYYGSTKDVVIRI--APKGELTQQKITDGVQKGASEIDSSV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E VGP + EL +G + ++ + +L+Y+ +RF+W A GA+ +L DI TL Sbjct: 119 NLSRIEYVGPSVGEELANQGFLAILAALGCILVYVALRFEWRMATGAVLSLAHDILITLA 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ +EF+L +AAVLT++GYS+ND +VV+DR+R+N + + + R++ID S+ ETL Sbjct: 179 VFSWTQMEFDLNVLAAVLTVVGYSLNDTIVVFDRVRENARRI-RNETMRNIIDISMTETL 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS I+V+ + GG +I F+ + GI SSI++A+ +++ R Sbjct: 238 SRTLITSGTTLITVIALFWKGGPMIHGFSTALLIGIGFGTYSSIYVASAWAMYLKMSRE 296 >gi|58040824|ref|YP_192788.1| protein-export membrane protein [Gluconobacter oxydans 621H] gi|58003238|gb|AAW62132.1| Protein-export membrane protein [Gluconobacter oxydans 621H] Length = 312 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 126/305 (41%), Positives = 186/305 (60%), Gaps = 3/305 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 F + D I FMR R G+ +S + SI S+ L F GL G+DF+GGI + P D Sbjct: 7 FRFVRDDRRINFMRGRHMGLIVSAVLSIASVILFFQPGLKLGLDFRGGIIVEAQTPGPAD 66 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP--GDSVAQTRVLEMVKKKITEIVPL 648 +R+ L+ I + Q F ++ + + ++++ VK I+ P Sbjct: 67 FGKLRAALDHAGIHPDAVQAFGSPRDVRISINAPEGADREAQTQKLVDGVKSAISAAEPG 126 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + + + VG +S EL R G++ + S +LIYIW+RF+ FA+ A+ TLILD+TKT+ Sbjct: 127 TQVLRADAVGASVSSELFRDGLLALGFSLAMILIYIWVRFEREFAISAVVTLILDLTKTV 186 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 GF A+ EF+L VAA+LT++GYS NDKVVVYDR+R+N++ Y T + R+L+D SINET Sbjct: 187 GFLAITRFEFDLVMVAALLTILGYSTNDKVVVYDRIRENLRKYRT-MPLRELLDLSINET 245 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TSM F++ LP+A++GGS + FA M FGIVV SSSIFIAAP+LL + + R Sbjct: 246 LNRTLGTSMTVFLAALPLALFGGSTLTGFATVMLFGIVVGTSSSIFIAAPLLLLMGEKRL 305 Query: 829 KNARI 833 + + Sbjct: 306 RKEAV 310 >gi|209964317|ref|YP_002297232.1| protein-export membrane protein SecF, putative [Rhodospirillum centenum SW] gi|209957783|gb|ACI98419.1| protein-export membrane protein SecF, putative [Rhodospirillum centenum SW] Length = 311 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 115/301 (38%), Positives = 190/301 (63%), Gaps = 4/301 (1%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L+PD AI F++ RF+G GIS++ + +I LF+ GLN GIDF+GGI + A + Sbjct: 1 MKPLRLVPDNTAIDFVKWRFFGFGISLILVLITIGGLFSTGLNLGIDFRGGILIEARAQQ 60 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 +D + +R L SL +G++ Q F G + L+R+Q Q G AQ ++ V+ + Sbjct: 61 TIDSAALRQQLGSLGLGEVQLQQFGGPNDVLIRVQQQEGGDAAQNEAVQKVRTAL---GD 117 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + E+VGP++ EL+R+G + +++ +A+ Y+ RF+W F + A+ D+ T Sbjct: 118 SYEYRRVELVGPRVGGELMRQGAIATVLAIMAIAAYVAFRFEWQFGVSALIATFHDVFVT 177 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG F + +EF+LTAVAA+LTL GYS+ND VVV+DRMR+ M+ + S + +I+ S+N+ Sbjct: 178 LGLFIVLQLEFDLTAVAALLTLAGYSINDTVVVFDRMREQMRKH-KSADLKTIINMSVNQ 236 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TLGR++ TS +++LP+ ++GGS + +F + + +GI+V SSI++AA ILL++ R Sbjct: 237 TLGRTILTSGTTLLAILPLLLFGGSALHNFTLALFWGILVGTFSSIYVAASILLYLPAIR 296 Query: 828 A 828 Sbjct: 297 R 297 >gi|329113324|ref|ZP_08242105.1| Protein-export membrane protein SecF [Acetobacter pomorum DM001] gi|326697149|gb|EGE48809.1| Protein-export membrane protein SecF [Acetobacter pomorum DM001] Length = 316 Score = 219 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 132/307 (42%), Positives = 192/307 (62%), Gaps = 3/307 (0%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + + I FMR R+ G+ +S + SI SI L F GL G+DF+GGI + Sbjct: 1 MFGRPLLRFVRKDTHINFMRGRYMGLIVSAVLSIASIILFFHPGLTLGLDFRGGIVVEAK 60 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + P D + +R+ L + I S Q F + L+RL + D V++ V++ +T+ Sbjct: 61 TSGPADFAKLRTALAAQHISHASLQAFGAPDDVLIRLDAR--DDQNTDAVVDTVRRAVTD 118 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 P +TI + VG +S EL R G++ + +S +L+YIW RF+W FAL A+ TL+LD+ Sbjct: 119 AQPGTTILRADAVGASVSAELFRNGMLALGLSLAMILVYIWFRFEWEFALSAVITLVLDL 178 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 TKT+GF + G EF+L VAA+LT++GYS NDKVVVYDR+R+N++ Y T + +LI+ S Sbjct: 179 TKTMGFLVITGFEFDLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRT-MPLMELINLS 237 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 INETL R++ TS F++ LP+A+WGG+ + FA M FGIVV SSSIFIAAP+LLF+ Sbjct: 238 INETLNRTLGTSSTVFLAALPLALWGGATLSGFAWTMLFGIVVGTSSSIFIAAPLLLFMG 297 Query: 825 DWRAKNA 831 + R K Sbjct: 298 EGRLKRG 304 >gi|15892077|ref|NP_359791.1| preprotein translocase subunit SecF [Rickettsia conorii str. Malish 7] gi|81528523|sp|Q92JB3|SECF_RICCN RecName: Full=Protein-export membrane protein secF gi|15619199|gb|AAL02692.1| protein-export membrane protein secF [Rickettsia conorii str. Malish 7] Length = 308 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + L+P+ I FM + SI+ S+ S + + N+GIDF GGI + V Sbjct: 1 MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R L L IG++ QNF E++ +R + + + + Sbjct: 61 DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKGFLQSNF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S +A+++YIW+RF+WYF LG + L+ D+ Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ SI Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL + Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298 Query: 826 WRAKNA 831 + Sbjct: 299 RKFNKK 304 >gi|325577685|ref|ZP_08147960.1| protein-export membrane protein SecF [Haemophilus parainfluenzae ATCC 33392] gi|325160430|gb|EGC72556.1| protein-export membrane protein SecF [Haemophilus parainfluenzae ATCC 33392] Length = 324 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 94/309 (30%), Positives = 152/309 (49%), Gaps = 5/309 (1%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 + +FM+ RF G SI+ S+ + T G N+G+DF GG+ Sbjct: 6 KDKNGHFIREVNGIKLPFPLTEFMKVRFVGYTFSIILMAISLFFIVTKGFNWGLDFTGGV 65 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 ++P DL +R L I Q ++ ++RL + + + VK Sbjct: 66 VFDTHFSQPADLEKIRGTLNQNGIASPIVQTTGSVQDVMIRLPA----DNNDSAIGDHVK 121 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + I P I + E VGP + EL + + + + MLIY+ RF+W G I + Sbjct: 122 SMLQTIDPNIHINSIEFVGPNVGEELAQGAVYATLATLAMMLIYVGSRFEWRLGFGGIAS 181 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L D+ TLG F+ +E +LT VAA+L+++GYS+ND +VV+DR+R+N + + D Sbjct: 182 LAHDVVITLGVFSALQVEMDLTFVAAILSVVGYSINDSIVVFDRVRENFRKIRRVETI-D 240 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +ID S+ +TL R++ TS+ + V+ + +GG I +F++ + GI SSIFIA I Sbjct: 241 IIDISLTQTLSRTIMTSLTTLLVVIALFFFGGPSIHNFSLALLIGIGFGTYSSIFIAIAI 300 Query: 820 LLFIYDWRA 828 I R Sbjct: 301 AYDIGLRRE 309 >gi|153951817|ref|YP_001397795.1| preprotein translocase subunit SecF [Campylobacter jejuni subsp. doylei 269.97] gi|152939263|gb|ABS44004.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. doylei 269.97] Length = 323 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 156/285 (54%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FMR RF + +S + SI LL+ GL YGIDF GG + + ++ +R LE Sbjct: 10 YNFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 G + G + + + + + ++ ++VGP Sbjct: 70 KQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ + +S IA+LIYI +RF+W FAL AI + I D+ TLG +LF I+ N Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AAVLT++GYS+ND ++++DR+R+ +K + +I++S++ TL R+V TS Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSRTVLTSGLT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +V+ + +GG +I F++ + GI+ SSIF+A+PILL+ Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPILLWFK 291 >gi|91205999|ref|YP_538354.1| preprotein translocase subunit SecF [Rickettsia bellii RML369-C] gi|157826637|ref|YP_001495701.1| preprotein translocase subunit SecF [Rickettsia bellii OSU 85-389] gi|122425282|sp|Q1RH99|SECF_RICBR RecName: Full=Protein-export membrane protein secF gi|166977667|sp|A8GYD9|SECF_RICB8 RecName: Full=Protein-export membrane protein secF gi|91069543|gb|ABE05265.1| Protein-export membrane protein secF [Rickettsia bellii RML369-C] gi|157801941|gb|ABV78664.1| preprotein translocase subunit SecF [Rickettsia bellii OSU 85-389] Length = 303 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 175/305 (57%), Gaps = 2/305 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + L+P+ I FM + SI+ S+ S + + N+GIDF GGI + V Sbjct: 1 MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGMYKFNFGIDFAGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R L L IG++ QNF E++ +R D++ + L + Sbjct: 61 DQTPDLPKMRQVLGELGIGEVVLQNFGSERDLSIRFGSSSEDNLMKNIELIKSTLQNNFP 120 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S A++IYIW+RF+WYF LG + L+ D+ Sbjct: 121 YNF-EYRKVDFVGPQVGRQLIEAGTMAMLFSFAAIMIYIWVRFEWYFGLGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y ++I+ SI Sbjct: 180 LALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKGITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL + Sbjct: 239 NETLSRTILTVVTTLLANLALVLFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTIFAN 298 Query: 826 WRAKN 830 + + Sbjct: 299 KKFEK 303 >gi|323976110|gb|EGB71203.1| protein-export membrane protein SecF [Escherichia coli TW10509] Length = 323 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 165/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L I +I ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q +++K Sbjct: 65 PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++++ +++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMVALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVTIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|322614691|gb|EFY11620.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618797|gb|EFY15685.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623504|gb|EFY20343.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629198|gb|EFY25977.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631918|gb|EFY28672.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637344|gb|EFY34046.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642030|gb|EFY38640.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647849|gb|EFY44324.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652526|gb|EFY48880.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653311|gb|EFY49644.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660540|gb|EFY56776.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664692|gb|EFY60885.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669255|gb|EFY65405.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670801|gb|EFY66934.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678961|gb|EFY75016.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681989|gb|EFY78014.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685182|gb|EFY81179.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194470|gb|EFZ79665.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196994|gb|EFZ82136.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203978|gb|EFZ88995.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206936|gb|EFZ91889.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210846|gb|EFZ95718.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214536|gb|EFZ99287.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223093|gb|EGA07436.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227043|gb|EGA11224.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230140|gb|EGA14260.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233878|gb|EGA17967.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238428|gb|EGA22486.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244116|gb|EGA28125.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246276|gb|EGA30259.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251902|gb|EGA35765.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257899|gb|EGA41578.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261088|gb|EGA44680.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264982|gb|EGA48481.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272545|gb|EGA55952.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 323 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 165/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR FW GIS L I +I ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q ++V Sbjct: 65 PAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++++ I++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + S+ ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|197116901|ref|YP_002137328.1| preprotein translocase subunit SecD [Geobacter bemidjiensis Bem] gi|197086261|gb|ACH37532.1| protein export membrane protein SecD [Geobacter bemidjiensis Bem] Length = 534 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 191/535 (35%), Positives = 286/535 (53%), Gaps = 22/535 (4%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65 W + + + L P + + + PK++I LGLDL+GG+HLV++VD Sbjct: 7 WRITMIVFFVLLSFLYLTPTLVSNLP-NWWTGYFPKDKIHLGLDLQGGTHLVMKVDTQKA 65 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 V G++ + + +L L I + + R ++ I L+F D EN A + + Sbjct: 66 VEGYIDLIASDLEDSLNVRRIRIHQINRVGEDAIRLAFYDVNSAENEAQLIKKKYPELEQ 125 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 D + ++ + + + + A+ Q++E IR RIDQ G+ E IQR Sbjct: 126 IQIRDSEGGMVH------LEFRMEKKAVQDRKDKAVAQALETIRNRIDQFGVLEPVIQRE 179 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------- 236 G I+IQLPG DP R +L+G TA++ F V N S Sbjct: 180 GIDHIVIQLPGITDPKRAIELIGKTARLEFKLVDENLSASSSSPYAMPDDAEILMEQQSN 239 Query: 237 ------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 G +V+ K I+G L A D + ++P V I F+ GAR F +VT N+ Sbjct: 240 SATGAVQGVPIVVKKKAIITGDLLTDAQVKIDSQNNEPYVAIDFNSTGARLFDQVTAANV 299 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 GK A+VLDG V +APVI + I G AQISGNF + A LA +LRAGSLP + IV+ Sbjct: 300 GKRFAIVLDGNVYSAPVIRERISGGSAQISGNFNEKEAADLAIVLRAGSLPAPVKIVQNV 359 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG +G DSI KG A G++L+VLFM+ Y GLVA+F + LNV+ L L+ LGA Sbjct: 360 TVGPSIGEDSISKGLMAGGIGILLVVLFMVFYYRMAGLVANFGMVLNVLFLLGALAALGA 419 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IA IVL +G++VDSN+L+ ER++EE R + S+D G+ +A+ T+ DS++T Sbjct: 420 TLTLPGIAAIVLLVGMSVDSNVLIFERVKEEIRLGCTPKMSIDAGYDKAFLTVMDSHVTT 479 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LI VLF FG G V+GFA+++ L ++I++FT + + + +++ + I Sbjct: 480 LITAAVLFQFGTGPVKGFAVSLSLGVIINLFTTLVTTKVVFDSAFSRFQIRRLSI 534 Score = 114 bits (283), Expect = 9e-23, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 80/159 (50%), Gaps = 4/159 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP I + I KG++ I + +++++ ++ L A ++L++ LG A G Sbjct: 362 GPSIGEDSISKGLMAGGIGILLVVLFMVFYYRM-AGLVANFGMVLNVLFLLGALAALGAT 420 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +AA++ L+G SV+ V++++R+++ ++L + + ID ++ + + + Sbjct: 421 LTLPGIAAIVLLVGMSVDSNVLIFERVKEEIRL---GCTPKMSIDAGYDKAFLTVMDSHV 477 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 I+ + +G + FA+ ++ G+++ +++ Sbjct: 478 TTLITAAVLFQFGTGPVKGFAVSLSLGVIINLFTTLVTT 516 >gi|312911441|dbj|BAJ35415.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 323 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 165/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR FW GIS L I +I ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNFD + +VR+ G++ Q ++V Sbjct: 65 PAEMDVMREALQKAGYEEPQLQNFDSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++++ I++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|261856765|ref|YP_003264048.1| protein-export membrane protein SecF [Halothiobacillus neapolitanus c2] gi|261837234|gb|ACX97001.1| protein-export membrane protein SecF [Halothiobacillus neapolitanus c2] Length = 312 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 98/304 (32%), Positives = 164/304 (53%), Gaps = 3/304 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F L P F R + IS L I +I L T G+N G+DF GG+ L V + Sbjct: 1 MFNLFPYNAKFDFFGKRKYAYIISALLLIAAIVSLSTRGINLGLDFTGGVVLEVGYAKAA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL +R +L+ + + Q F + ++RL P Q ++ + V + + + Sbjct: 61 DLDAIRDDLKQNKFKEAVVQYFGSSETVMIRLP--PAKGQNQNQLADQVLSVLKKQDDSA 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 T++ E VGP + +EL G + +I+ +LI++ +R++ A GA+ TL D+ G Sbjct: 119 TMRRVEFVGPAVGKELFNSGGLAMIVVLSGLLIFVSLRYQLKMATGAVLTLSHDLIMVFG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F ++ GIEFNLT +AA L L GYS+ND +VV+DRMR+N + ++++ S+N+T+ Sbjct: 179 FISVTGIEFNLTVLAAYLALAGYSINDMIVVFDRMRENFRKIRKGSEI-EIMNASVNQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R+V T+ F+SVL + V+GG + F+ + GIV+ SSI++A+ + L + R Sbjct: 238 SRTVITATTTFLSVLALYVFGGEALRGFSETLLVGIVLGTFSSIYVASSLSLDLGLKRKD 297 Query: 830 NARI 833 ++ Sbjct: 298 LLKL 301 >gi|83943029|ref|ZP_00955489.1| protein-export membrane protein SecF [Sulfitobacter sp. EE-36] gi|83846037|gb|EAP83914.1| protein-export membrane protein SecF [Sulfitobacter sp. EE-36] Length = 322 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 111/310 (35%), Positives = 184/310 (59%), Gaps = 7/310 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R LIPD I F + G S + + ++ + FT GLNYGIDF+GG L ++ Sbjct: 1 MRLRLIPDDTNIDFFKHAKLTFGASCVAVLLALAVWFTMGLNYGIDFRGGTTLRTQSDAA 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642 VD++ R+ LE L++GD+S + +VR+Q Q G+ A +++ V++ + Sbjct: 61 VDVAAYRTALEPLELGDVSISEVFDPASDSTKHVAMVRIQAQEGEEAASPEMIQNVEEAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + P + E VGPK+S ELI+ + V S A+LIYIW+RF+W F++GA+ L Sbjct: 121 KTVAPNIVFTSVESVGPKVSGELIQTAFLAVAASLGAILIYIWLRFEWQFSVGAVAALFH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I F+L +AA+LT+IGYS+ND VV++DR+R+N++ Y R++++ Sbjct: 181 DVVLTIGVFSALQIRFDLAVIAAILTIIGYSINDTVVIFDRLRENLRKYKKR-DLREIMN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 S+NETL R++ TS ++++ + V GG VI F + +G+VV SS+++A ++LF Sbjct: 240 LSVNETLSRTLMTSGTTLLALIALLVLGGDVIRGFVFAITWGVVVGTYSSVYVAKNVVLF 299 Query: 823 IYDWRAKNAR 832 + R + + Sbjct: 300 LGVKRDWSKK 309 >gi|261393022|emb|CAX50614.1| preprotein translocase SecD subunit [Neisseria meningitidis 8013] Length = 618 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 332 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 512 NERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597 Score = 152 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 82/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ +++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 513 ERIREELRV---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597 >gi|62259255|gb|AAX77848.1| unknown protein [synthetic construct] Length = 349 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 84/305 (27%), Positives = 160/305 (52%), Gaps = 3/305 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + +I F+ + + S+L + S+ +FT GLN G+DF GG Q+ + Sbjct: 22 KHMLEMEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQT 81 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 + S + + + + G+ N + + + + + ++ Sbjct: 82 STKSQDSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQV 141 Query: 646 VP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +Q+ +GP++ +EL G++ +I++ + +LIYI RF+ F + A L+ D Sbjct: 142 ENSLDAQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHD 201 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 LG F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N + + S +++++ Sbjct: 202 PIVILGIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNR 260 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 SIN+TL R++ TS + V+ + ++GGS + +F++ + GIVV SSI++A + + + Sbjct: 261 SINDTLSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVAL 320 Query: 824 YDWRA 828 R Sbjct: 321 GLNRE 325 >gi|166977687|sp|A8F0L9|SECF_RICM5 RecName: Full=Protein-export membrane protein secF Length = 308 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + L+P+ I FM + SI+ S+ S + + N+GIDF GGI + V Sbjct: 1 MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R L L IG++ QNF E++ +R + + + + Sbjct: 61 DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKASLQSNF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S +A+++YIW+RF+WYF LG + L+ D+ Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ SI Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL + Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298 Query: 826 WRAKNA 831 + Sbjct: 299 RKFNKK 304 >gi|239947202|ref|ZP_04698955.1| protein-export membrane protein SecD [Rickettsia endosymbiont of Ixodes scapularis] gi|239921478|gb|EER21502.1| protein-export membrane protein SecD [Rickettsia endosymbiont of Ixodes scapularis] Length = 518 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 193/532 (36%), Positives = 312/532 (58%), Gaps = 26/532 (4%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+N W + L + ++ ALPNF+ + +P + ++LGLDLRGG+HL+ + Sbjct: 1 MQNLPKWKIFLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLFD 55 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 VD D ++N ++ +D LR +++ IG ++ QN I L + + + Sbjct: 56 VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEELKPLKKIINK-- 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 ++ E +I + S++ ++ +++ ++QS+EI+R R+D G E Sbjct: 114 ----------IDPEIIAEINENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233 T+Q+ G IL+Q+PGE++PS L+ +LG TAK++FH V N + + + G + Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223 Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +S G Y+V K + G + + + VV SF+ +G++ F E+T++N G Sbjct: 224 GDSESHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTG 283 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K LA+VLD ++L+AP IN AI G I+GNFT+E+A LA +LRAGSLP L I+EER+ Sbjct: 284 KRLAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERS 343 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 +G +LG+DSI G A + G + + +FM+ YG GL A+ ++ L ++ LALLSL AT Sbjct: 344 IGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A TI DSN+T L Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIKTGFESAVVTILDSNLTTL 463 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 I +L+ FG GA++GFA+ + + I+ S+F+AI I + ++ ++Y K K + Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSIFSAIIITKLLIDIWVKYFKPKKL 515 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 4/146 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I IA+ I++ + L A L L + L +LF Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + +S I + + + Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIKTGFESAVVTILDS 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPM 801 ++ I + ++G I FA+ + Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVAL 484 >gi|317404684|gb|EFV85076.1| SecD protein [Achromobacter xylosoxidans C54] Length = 626 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 182/518 (35%), Positives = 283/518 (54%), Gaps = 24/518 (4%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74 + LL A P ++ + LGLDLRGG H +L+VD + + Sbjct: 110 VALNLLPASPTWMRAL------GWFAPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLA 163 Query: 75 DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134 ++RS L+ + + V + + + SFA+++ ++ + L D + Sbjct: 164 ADVRSVLRDQKVNVAGVERSGMSVAASFANAQDRDRAISTLRSRL--------PDLEFTE 215 Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194 + + L+ + +V A++Q++ + RI+++G++E IQ+ GS RI++QLP Sbjct: 216 SEENGKLLLLGALNPAAVTRVQDSALKQNINTLHNRINELGVAEPVIQQQGSDRIVVQLP 275 Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248 G QD ++ ++LLG TA + V + + + FG+ D DG LV +V Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDSPAAQAALLGGSVPFGLERYSDRDGRPILVRRQVV 335 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304 ++G +L A D +T + V ++ D GAR F +VTRDNIGK + G V+T Sbjct: 336 LTGENLQDAQPGRDSQTQQAAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 APVI I G+ QISG+ + E A A +LRAG+L ++I+EER +G LG+D+I KG Sbjct: 396 APVIRSEIAGGQVQISGSMSSEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNISKG 455 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 + + G + I +F+I+ Y +G+ + + LNV+L LALLS+L ATLTLP IA I L + Sbjct: 456 FHSTLYGFLAIAVFIIIYYHLFGVFSTVGLTLNVLLLLALLSMLQATLTLPGIAAIALTL 515 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+A+DSN+L+NERIREE R S ++ GF RA+ TI DSN+T LI + L FG G Sbjct: 516 GMAIDSNVLINERIREELRNGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +RGFA+ L IL SMF+++ VRA+ KK + Sbjct: 576 IRGFAVVHCLGILTSMFSSVVGVRALANLWYGRKKKLT 613 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 83/209 (39%), Gaps = 4/209 (1%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G ++ + + + +I +GP + + I KG + +A+ Sbjct: 407 QVQISGSMSSEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNISKGFHSTLYGFLAI 466 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++I I + F + + L L++ L ++ L +AA+ +G +++ V++ Sbjct: 467 AVFIIIYYHL-FGVFSTVGLTLNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLI 525 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 +R+R+ ++ S + I G + +++ I L + +G I FA+ Sbjct: 526 NERIREELR---NGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + Y + K Sbjct: 583 HCLGILTSMFSSVVGVRALANLWYGRKKK 611 Score = 41.6 bits (95), Expect = 0.64, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 21/124 (16%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I + IGLL LPNF +S + S + Sbjct: 3 RYPLWKYITVLIAVLIGLLYTLPNFYGESPAVQV------------------SSAKATIK 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + ++ + + + EG+ + + F + + D + L Sbjct: 45 VDPAMLSRVEQILTDAK--IPNEGVYYEQNGTLG-TVRARFTSTDLQLQARDLIDKSLNT 101 Query: 122 VNSK 125 V Sbjct: 102 VQGD 105 >gi|37678932|ref|NP_933541.1| preprotein translocase subunit SecD [Vibrio vulnificus YJ016] gi|161501848|ref|NP_759439.2| preprotein translocase subunit SecD [Vibrio vulnificus CMCP6] gi|37197674|dbj|BAC93512.1| preprotein translocase subunit SecD [Vibrio vulnificus YJ016] gi|319999072|gb|AAO08966.2| protein-export membrane protein SecD [Vibrio vulnificus CMCP6] Length = 618 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 156/524 (29%), Positives = 275/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D RS L+ I Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRDAKI 163 Query: 87 GVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+R + I + D ++ L+ D + Sbjct: 164 RYRSIRPVGSDAIEVLLRDGEELSQAKRELEK--------LHPDMAFVESDKDGRYALIA 215 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 216 TFTETRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275 Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G +D +G +++ +V +SG + ++ Sbjct: 276 LGATATLEFREVDDKADLAAAASGRAPAGSEIKQDRNGRPVVLKKRVILSGASITD-ASS 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + ++ NIGK +A V Sbjct: 335 SVDEYGRPQVNISLDSEGGNKMAAFSKKNIGKLMATVFAEYKDSGRKSPEGKVILTKHEE 394 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A + G+V ++LF ++ Y K+GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 455 MGIQACIWGMVAVMLFTLLYYRKFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 514 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 LTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 TGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRINKLSI 618 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 91/213 (42%), Gaps = 5/213 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I +A Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 466 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 467 VMLFTLLYYR-KFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ + + I + ++ I+ + + G I FA Sbjct: 526 LIFERIREELRE---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 582 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ GI+ + ++I I+ +Y + N Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLLYGGKRINK 615 >gi|170767721|ref|ZP_02902174.1| protein-export membrane protein SecF [Escherichia albertii TW07627] gi|170123209|gb|EDS92140.1| protein-export membrane protein SecF [Escherichia albertii TW07627] Length = 323 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L I SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIASIVIMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q +++K Sbjct: 65 PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSKVLKVINESTHQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + +++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|311108321|ref|YP_003981174.1| protein-export membrane protein SecD [Achromobacter xylosoxidans A8] gi|310763010|gb|ADP18459.1| protein-export membrane protein SecD [Achromobacter xylosoxidans A8] Length = 626 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 180/518 (34%), Positives = 281/518 (54%), Gaps = 24/518 (4%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74 + LL A P ++ + LGLDLRGG H +L+VD + + Sbjct: 110 VALNLLPASPAWMRAL------GWFAPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLA 163 Query: 75 DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134 ++RS L+ + + V + + I +FA++ ++ + L D + Sbjct: 164 ADVRSVLRDQKVNVAGVERSGLAIAATFANADDRDRAISTLRSRL--------PDLEFTE 215 Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194 + + L+ + +V A++Q++ + RI+++G++E IQ+ G+ RI++QLP Sbjct: 216 REENGKPLLMAALNPAAVTRVQDSALKQNINTLHNRINELGVAEPVIQQQGADRIVVQLP 275 Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248 G QD ++ ++LLG TA + V + + FG+ D DG LV +V Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDTPAAQAALLGGSVPFGLERYNDRDGRPILVRRQVI 335 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304 ++G +L A D +T + V ++ D GAR F +VTRDNIGK + G V+T Sbjct: 336 LTGENLQDAQPGRDSQTQQAAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 APVI I G+ QISG+ + E A A +LRAG+L ++I+EER +G LG+D+I KG Sbjct: 396 APVIRGEIAGGQVQISGSMSSEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKG 455 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 + + G + I +F+I+ Y +G+ + + +NV+L LALLS+L ATLTLP IA I L + Sbjct: 456 FYSTLYGFLAIAVFIILYYHLFGVFSTIGLTMNVLLLLALLSMLQATLTLPGIAAIALTL 515 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+A+DSN+L+NERIREE R S ++ GF RA+ TI DSN+T LI + L FG G Sbjct: 516 GMAIDSNVLINERIREELRAGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +RGFA+ L IL SMF+++ VRA+ KK + Sbjct: 576 IRGFAVVHVLGILTSMFSSVVGVRALANLWYGRKKKLT 613 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 87/247 (35%), Gaps = 4/247 (1%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 ++ + L G ++ + + Sbjct: 369 FRDVTRDNIGKRMAILLFENGKGEVVTAPVIRGEIAGGQVQISGSMSSEEAADTALLLRA 428 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + +I +GP + + I KG + +A+ ++I + + F + + L + Sbjct: 429 GALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFLAIAVFIILYYHL-FGVFSTIGLTM 487 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 ++ L ++ L +AA+ +G +++ V++ +R+R+ ++ S + I Sbjct: 488 NVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLINERIREELRA---GASPQQAIH 544 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 G + +++ I L + +G I FA+ GI+ + SS+ + Sbjct: 545 HGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVVHVLGILTSMFSSVVGVRALANL 604 Query: 823 IYDWRAK 829 Y + K Sbjct: 605 WYGRKKK 611 Score = 39.7 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 21/124 (16%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I + IGLL LPNF +S + S + Sbjct: 3 RYPLWKYITVLVAVIIGLLYTLPNFYGESPAVQV------------------SSAKATIK 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + + + + + EG+ + + F + + D + L Sbjct: 45 VDPAMLNRVDQILTDAK--IPNEGVYYEQNGTLG-TVRARFTSTDLQLQARDLIDRSLNT 101 Query: 122 VNSK 125 V Sbjct: 102 VAGD 105 >gi|261401412|ref|ZP_05987537.1| protein-export membrane protein SecD [Neisseria lactamica ATCC 23970] gi|269208540|gb|EEZ74995.1| protein-export membrane protein SecD [Neisseria lactamica ATCC 23970] Length = 617 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 166/506 (32%), Positives = 278/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKAMPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGPDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K + L+ +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPAKLREASEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + +FM+V Y G + ++ N++ + +LS L ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VAVFMVVYYRLMGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R + ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ + Sbjct: 511 NERIREELRAGVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 84/208 (40%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + A+ Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 VFMVVYYRL-MGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ ++ + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 41.2 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L ++ + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIALTVAVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 ++ + LK+ GI M + N + + F D+ + D + L Sbjct: 47 ---------DQTRSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|187922707|ref|YP_001894349.1| preprotein translocase subunit SecD [Burkholderia phytofirmans PsJN] gi|187713901|gb|ACD15125.1| protein-export membrane protein SecD [Burkholderia phytofirmans PsJN] Length = 687 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 163/516 (31%), Positives = 272/516 (52%), Gaps = 24/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L A P +L + LGLDLRGG H +L+VD +N L Sbjct: 109 IVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ + I + ++ + ++FAD +N + +++ + + P Sbjct: 160 ASDARTLLRDKNIRDGGVNRVNQSVVINFADQATADNASKQLSRSIAELQWASQAGPDGG 219 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + + T + V A++Q++ + R++++G++E IQ+ G+ RI+++L Sbjct: 220 VQLVGT-------FTPAVQKAVQDAALKQNITTLHNRVNELGVAEPVIQQQGADRIVVEL 272 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L+ ++ Sbjct: 273 PGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQIIF 332 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R ++RDNIGKP+A+VL + + Sbjct: 333 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVASISRDNIGKPMAMVLFEKGKGEVLTV 391 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I KG Sbjct: 392 ATIQSELGDRFQITGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFH 451 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 ++V G I +FMI Y +G+++ + +N++L +A+LS+L ATLTLP IA I L +G+ Sbjct: 452 SVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALGM 511 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+D+N+L+NER+REE R ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 512 AIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGIALLAFGSGPVR 571 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 GFAI + IL SMF+A+ R ++ KK Sbjct: 572 GFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 80/185 (43%), Gaps = 4/185 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG V+ A+ +++ + F + ++ L +++ + Sbjct: 429 MDIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFMIAYY-MLFGVISMIGLSVNLLLLI 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ + I Sbjct: 488 AVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGAPPQLAIQNGYAHA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ + + +G + FAI GI+ + S++F + I+ Y + Sbjct: 545 WATILDSNVTTLIAGIALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKK 604 Query: 829 KNARI 833 K + Sbjct: 605 KLKSL 609 Score = 40.4 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 29/123 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + IGL+ LPN ++ ++V Sbjct: 3 RYPLWKYAVMLVALVIGLVYTLPNLFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117 + + L I + + I + D+ + + D + Sbjct: 38 SGKATVKLDSTTLSAVEAALAANQIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQK 97 Query: 118 FLQ 120 L Sbjct: 98 SLN 100 >gi|148284959|ref|YP_001249049.1| preprotein translocase subunit SecD [Orientia tsutsugamushi str. Boryong] gi|146740398|emb|CAM80856.1| protein-export membrane protein [Orientia tsutsugamushi str. Boryong] Length = 520 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 184/530 (34%), Positives = 306/530 (57%), Gaps = 19/530 (3%) Query: 1 MRNNPW-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + + + +I I L +PNF + +P+ I+LGLDL+GGS+++L+ Sbjct: 1 MKQFLFNKIFITVLITAIALCFVVPNFFDTTKY----QWLPQKTINLGLDLKGGSYVLLQ 56 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 +D D +V L + LR L+ IG ++ + I L DS + + + + Sbjct: 57 LDFDTYVTEQLNIIVGNLRKELRNNKIGYKELKIQKQYIHLELRDSEARFKVENLLRNLE 116 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 + L+ + ++ I + + + ++ IE SMEIIR R+D G +E+ Sbjct: 117 TSI-----------LIKFSQNNKLHISFTDHKLSELRESLIENSMEIIRMRVDSSGTTEA 165 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG---VRFLRDS 236 IQ+ G + I++++PG +DP L+ L+ AK++F+ V + + + Sbjct: 166 NIQKHGDNNIILEVPGIEDPKHLKNLVTKIAKLTFNIVDSGIVAQDQHISKDLMLVKEQN 225 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + L+ + G L K +PVV +F+ +G + F ++T++ G+ LA+ Sbjct: 226 NPENKLLVRRQPTIGGDLLTNANVSFNKYSQPVVSFTFNSLGTKLFADITKEYQGRRLAI 285 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 +LDG++L+APVI++ I G ISGNFTIE+A L+ +L++G+LP L+++EE+ +G L Sbjct: 286 ILDGKLLSAPVISEPILGGAGMISGNFTIESAKELSLLLKSGALPAALSVIEEKTIGPTL 345 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 GSDSI+ G A G VL+ +FM+ +YG GL A+ ++F ++I LA+LS+L ATLTLP Sbjct: 346 GSDSIHAGKLAGCIGFVLVCIFMLCIYGILGLFANIALFFSLIYILAILSMLQATLTLPG 405 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGI+L IG+AVD+NIL+ ERIREE + S+ S+ GF +++TI DSNIT L+A ++ Sbjct: 406 IAGIILTIGMAVDANILIYERIREELQNGSSILYSVREGFKLSFATIIDSNITTLLAAIL 465 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 L+ FG GAV+GFAIT+ + IL SM++A I R ++ ++YK ++ Sbjct: 466 LYIFGTGAVKGFAITLAIGILSSMYSATIITRLLIDSWVKYKLPIKLNTT 515 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 75/176 (42%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G + I + + I++ + L A L + L ++ Sbjct: 340 TIGPTLGSDSIHAGKLAGCIGFVLVCIFMLCIYGIL-GLFANIALFFSLIYILAILSMLQ 398 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ +++Y+R+R+ ++ S + + + + + Sbjct: 399 ATLTLPGIAGIILTIGMAVDANILIYERIREELQ---NGSSILYSVREGFKLSFATIIDS 455 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + ++G + FAI +A GI+ + S+ I ++ ++ Sbjct: 456 NITTLLAAILLYIFGTGAVKGFAITLAIGILSSMYSATIITRLLIDSWVKYKLPIK 511 >gi|256027956|ref|ZP_05441790.1| protein translocase subunit secF [Fusobacterium sp. D11] gi|289765901|ref|ZP_06525279.1| translocase subunit secF [Fusobacterium sp. D11] gi|289717456|gb|EFD81468.1| translocase subunit secF [Fusobacterium sp. D11] Length = 316 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 84/295 (28%), Positives = 148/295 (50%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + ++ + ISI+ SI + FT GLNYGIDF GG + + Sbjct: 1 MKTHLHIIKNIKIYLSISIILVSLSIIIFFTKGLNYGIDFSGGNLFQLKYSGTAVTLNQI 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + ++ N + K + + + + + T+ + Sbjct: 61 NENLDELAKELPQVNSNSRKVQISDDGTVIVRVPEISENDKKKVLNSLQQLGSYTLDKED 120 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VG I +L + I + I AI +++YI +RF++ FA+G I +L+ DI +GF AL G Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVVYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 E + +AA+LT++GYS+ND +V+YDR+R+N+K + +D+S+N+T RS+ T Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEQCMDESVNQTAIRSLNT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 S+ SV+ + ++GG+ + +F + + GI+ SSIF+A PI+ + + N Sbjct: 241 SVTTLFSVIAILIFGGASLKTFIMTLLIGILAGTYSSIFVATPIVYLLNKRKGNN 295 >gi|83954203|ref|ZP_00962923.1| protein-export membrane protein SecF [Sulfitobacter sp. NAS-14.1] gi|83841240|gb|EAP80410.1| protein-export membrane protein SecF [Sulfitobacter sp. NAS-14.1] Length = 321 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 111/310 (35%), Positives = 184/310 (59%), Gaps = 7/310 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R LIPD I F + G S + + ++ + FT GLNYGIDF+GG L ++ Sbjct: 1 MRLRLIPDDTNIDFFKHAKLTFGASCVAVLLALAVWFTMGLNYGIDFRGGTTLRTQSDAA 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642 VD++ R+ LE L++GD+S + +VR+Q Q G+ A +++ V++ + Sbjct: 61 VDVAAYRTALEPLELGDVSISEVFDPASDSTKHVAMVRIQAQEGEEAASPEMIQNVEEAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + P + E VGPK+S ELI+ + V S A+LIYIW+RF+W F++GA+ L Sbjct: 121 KTVAPNIVFTSVESVGPKVSGELIQTAFLAVAASLGAILIYIWLRFEWQFSVGAVAALFH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I F+L +AA+LT+IGYS+ND VV++DR+R+N++ Y R++++ Sbjct: 181 DVVLTIGVFSALQIRFDLAVIAAILTIIGYSINDTVVIFDRLRENLRKYKKR-DLREIMN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 S+NETL R++ TS ++++ + V GG VI F + +G+VV SS+++A ++LF Sbjct: 240 LSVNETLSRTLMTSGTTLLALIALLVLGGDVIRGFVFAITWGVVVGTYSSVYVAKNVVLF 299 Query: 823 IYDWRAKNAR 832 + R + + Sbjct: 300 LGVKRDWSKK 309 >gi|258542153|ref|YP_003187586.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus IFO 3283-01] gi|256633231|dbj|BAH99206.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus IFO 3283-01] gi|256636290|dbj|BAI02259.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus IFO 3283-03] gi|256639343|dbj|BAI05305.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus IFO 3283-07] gi|256642399|dbj|BAI08354.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus IFO 3283-22] gi|256645454|dbj|BAI11402.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus IFO 3283-26] gi|256648507|dbj|BAI14448.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus IFO 3283-32] gi|256651560|dbj|BAI17494.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654551|dbj|BAI20478.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus IFO 3283-12] Length = 316 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 136/307 (44%), Positives = 192/307 (62%), Gaps = 3/307 (0%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + + I FMR R+ G+ +S + SI SI L F GL G+DF+GGI + Sbjct: 1 MFGRPLLRFVRKDTQINFMRGRYMGLIVSAVLSIASIILFFHPGLTLGLDFRGGIVVEAK 60 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + P D + +RS L + I S Q F + L+RL GD V++ V++ +TE Sbjct: 61 TSGPADFAKLRSALGAQHISHASLQAFGAPDDVLIRL--DAGDDQNTDAVVDTVRRAVTE 118 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 P +TI + VG +S EL R G++ + +S +L+YIW RF+W FAL A+ TL+LD+ Sbjct: 119 AQPGTTILRADAVGASVSAELFRNGMLALGLSLAMILVYIWFRFEWEFALSAVITLVLDL 178 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 TKT+GF + G EF+L VAA+LT++GYS NDKVVVYDR+R+N++ Y T + DLI+ S Sbjct: 179 TKTMGFLVITGFEFDLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRT-MPLIDLINLS 237 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 INETL R++ TS F++ LP+A+WGG+ + FA M FGIVV SSSIFIAAP+LLF+ Sbjct: 238 INETLNRTLGTSSTVFLAALPLALWGGATLSGFAWTMLFGIVVGTSSSIFIAAPLLLFMG 297 Query: 825 DWRAKNA 831 + R K Sbjct: 298 EGRLKRG 304 >gi|121634401|ref|YP_974646.1| preprotein translocase subunit SecD [Neisseria meningitidis FAM18] gi|120866107|emb|CAM09845.1| putative protein-export membrane protein [Neisseria meningitidis FAM18] Length = 618 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 275/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS +R L++E I Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGGIRRELRREKI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 332 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 512 NERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597 Score = 152 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 82/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ +++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 513 ERIREELRV---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597 Score = 40.1 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 4 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 47 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + L+ GI M + N + + F D+ + D + L Sbjct: 48 ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 96 >gi|260494132|ref|ZP_05814263.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_33] gi|260198278|gb|EEW95794.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_33] Length = 316 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 84/295 (28%), Positives = 148/295 (50%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + ++ + ISI+ SI + FT GLNYGIDF GG + + Sbjct: 1 MKTHLHIIKNIKIYLSISIILVSLSIIIFFTKGLNYGIDFSGGNLFQLKYSGTTVTLNQI 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + ++ N + K + + + + + T+ + Sbjct: 61 NENLDELAKELPQVNSNSRKVQISDDGTVIVRVPEISENDKKKVLNSLQQLGSYTLDKED 120 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VG I +L + I + I AI +++YI +RF++ FA+G I +L+ DI +GF AL G Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVVYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 E + +AA+LT++GYS+ND +V+YDR+R+N+K + +D+S+N+T RS+ T Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEQCMDESVNQTAIRSLNT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 S+ SV+ + ++GG+ + +F + + GI+ SSIF+A PI+ + + N Sbjct: 241 SVTTLFSVIAILIFGGASLKTFIMTLLIGILAGTYSSIFVATPIVYLLNKRKGNN 295 >gi|309378988|emb|CBX22441.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 617 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 166/506 (32%), Positives = 278/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKAMPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGPDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K + L+ +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPAKLREASEGNVPAGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + +FM+V Y G + ++ N++ + +LS L ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VAVFMVVYYRLMGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R + ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ + Sbjct: 511 NERIREELRAGVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 84/208 (40%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + A+ Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 VFMVVYYRL-MGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ ++ + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 41.2 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L ++ + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIALTVAVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 ++ + LK+ GI M + N + + F D+ + D + L Sbjct: 47 ---------DQTRSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|239948358|ref|ZP_04700111.1| protein-export membrane protein SecF [Rickettsia endosymbiont of Ixodes scapularis] gi|239922634|gb|EER22658.1| protein-export membrane protein SecF [Rickettsia endosymbiont of Ixodes scapularis] Length = 308 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 173/306 (56%), Gaps = 2/306 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + L+P+ I FM + SI+ S+ S + + N GIDF GGI + V Sbjct: 1 MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNSGIDFAGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R L L IG++ QNF E++ +R + + + + Sbjct: 61 DQAPDLPKMRGVLGELGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKASLQSNF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S +A+++YIW+RF+WYF LG + L+ D+ Sbjct: 120 SYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ SI Sbjct: 180 LALGFMSMIKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL + Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298 Query: 826 WRAKNA 831 + Sbjct: 299 RKFNKK 304 >gi|238650712|ref|YP_002916565.1| preprotein translocase subunit SecF [Rickettsia peacockii str. Rustic] gi|238624810|gb|ACR47516.1| preprotein translocase subunit SecF [Rickettsia peacockii str. Rustic] Length = 308 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + L+P+ I FM + SI+ S+ S + + N+GIDF GGI + V Sbjct: 1 MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R L L IG++ QNF E++ +R + + + + Sbjct: 61 DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKGSLQSNF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S +A+++YIW+RF+WYF LG + L+ D+ Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ SI Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL + Sbjct: 239 NETLSRTMLTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298 Query: 826 WRAKNA 831 + Sbjct: 299 RKFNKK 304 >gi|114570448|ref|YP_757128.1| protein translocase subunit SecF [Maricaulis maris MCS10] gi|114340910|gb|ABI66190.1| protein translocase subunit secF [Maricaulis maris MCS10] Length = 314 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 169/300 (56%), Gaps = 9/300 (3%) Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 I F+RAR+ + +S LF + S+ T G+N+GIDF+GGIQ V A + +RS Sbjct: 14 KIPFIRARWIALAVSGLFILFSMFEFATVGINFGIDFRGGIQTEVTALNTTSIEDLRSTA 73 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPG--------DSVAQTRVLEMVKKKITEIVPLST 650 L +G+ Q + AQ + ++ +T P Sbjct: 74 NGLDLGEARVQGAGSVGDDRTTYLISLPLQAGEGLEGEAAQNTARQALEAALTTTFPDIQ 133 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ T ++G +S ELI G + I+ ML+YIW RF+W +++GAI L D+ T+G Sbjct: 134 MRGTTVIGGAVSGELIVTGFTAIGIALFLMLVYIWFRFEWQYSVGAIVALTHDVIATIGM 193 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+L + F+L VAA+LT++GYS+ND VVVYDR+R+N++ Y ++++D SIN+TL Sbjct: 194 FSLTQMTFDLATVAAILTIVGYSMNDTVVVYDRIRENLRKY-KRKPLQEVLDLSINDTLS 252 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ TS+ ++++ + + GG+ + FA M +G+++ SSIF+AAPILLF R N Sbjct: 253 RTILTSVTTLVALISLYLIGGTALKGFAFAMIWGVMIGTFSSIFVAAPILLFTNVQRESN 312 >gi|15676511|ref|NP_273651.1| preprotein translocase subunit SecD [Neisseria meningitidis MC58] gi|7225837|gb|AAF41034.1| protein-export membrane protein SecD [Neisseria meningitidis MC58] Length = 618 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ N +T+ D+ + ++ + + I + Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 213 LSEEAVNKVCSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 332 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597 >gi|114570449|ref|YP_757129.1| protein-export membrane protein SecD [Maricaulis maris MCS10] gi|114340911|gb|ABI66191.1| protein-export membrane protein SecD [Maricaulis maris MCS10] Length = 551 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 183/545 (33%), Positives = 289/545 (53%), Gaps = 25/545 (4%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQS------------MLDRFPSAMPKNRISLGLDLRG 52 W ++ +I +G++ +PNF+P+ +P I+LGLDL+G Sbjct: 6 RWKLLSIFLITLLGVMYTIPNFVPEEDRFTINEVDGTATPKGIWRFIPAGTINLGLDLQG 65 Query: 53 GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENI 111 GSH+V EVD D+ + L+ + ++R+ L+ + S+ I +++ + ++ Sbjct: 66 GSHIVFEVDMDEVRDAQLETLASDIRTTLRDAPPVLARSVAVIGDEVVVLLVRPEERDTA 125 Query: 112 ADKVTLFLQGVNSKLNV----DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 +++ V + + + + I I ++ + + + +EQS+ +I Sbjct: 126 LERIRELNAPVTTGIGQVGLSNMYDIGADPSDPSAIRISVTSQQYESIRNRTLEQSITVI 185 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP-------- 219 R+R+D +G ++ TI R G R+L+Q+PG DP + L+GT A MSFH V Sbjct: 186 RRRLDGLGTTDPTIARSGDRRVLVQVPGADDPQEIIDLVGTQAAMSFHMVDENVDPGPNG 245 Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279 + VE + ++G +LN + P PVV D GA Sbjct: 246 QARTPPGVTVYPMADTGGTQWLAVETRQRLTGENLNSSNVTTHPSYVGPVVGFRLDTQGA 305 Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339 F E+TR N G+ A+VLD ++TAP IN+ I SG I G++T ETA L +L AG+ Sbjct: 306 LIFGELTRANRGRRFAIVLDNEIITAPTINEPILSGSGVIGGSYTYETANQLVILLNAGA 365 Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399 LP L VE+R V LG D + G AI+ G L+++FM+ +YG +GL + ++ +NV+ Sbjct: 366 LPASLTPVEQRVVTGTLGQDQVESGKLAIMIGFALVIVFMVAMYGVFGLFSTMALLVNVV 425 Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459 L L LS LG TLTLP IAGI+L IG+AVD+N+L+ ERIREE N++ +L G+ RA Sbjct: 426 LILGGLSGLGMTLTLPGIAGIILTIGMAVDANVLIYERIREEVLNNRTPVQALQAGYERA 485 Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519 + I D+NIT IA VL+ G G VRGFA+T+G+ I+ S+FTA + R + + +R K Sbjct: 486 LAAILDANITTFIAAAVLYMLGAGPVRGFAVTLGIGIITSVFTAFVVSRLLAVLWLRAFK 545 Query: 520 MKSID 524 K + Sbjct: 546 PKKLP 550 Score = 125 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 81/174 (46%), Gaps = 5/174 (2%) Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 + ++ + G + ++I +++++ + F L + L++++ LG + G+ Sbjct: 381 TLGQDQVESGKLAIMIGFALVIVFMVAMYGV-FGLFSTMALLVNVVLILGGLSGLGMTLT 439 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +A ++ IG +V+ V++Y+R+R+ + + + L + ++ Sbjct: 440 LPGIAGIILTIGMAVDANVLIYERIREEVLNNR---TPVQALQAGYERALAAILDANITT 496 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 FI+ + + G + FA+ + GI+ + ++ F+ + +L ++ K ++ Sbjct: 497 FIAAAVLYMLGAGPVRGFAVTLGIGIITSVFTA-FVVSRLLAVLWLRAFKPKKL 549 >gi|114331423|ref|YP_747645.1| preprotein translocase subunit SecF [Nitrosomonas eutropha C91] gi|114308437|gb|ABI59680.1| protein translocase subunit secF [Nitrosomonas eutropha C91] Length = 310 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 159/303 (52%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I F R + S++ SI +I L T GLN +DF GG + + +P D Sbjct: 1 MDFFRFERDIPFTRWGKLSMTFSLIISILAIYSLVTKGLNLAVDFTGGTVMEISYQQPAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L R L S+ + D QNF ++ ++RL + + + E V + + P Sbjct: 61 LDKTRKVLASIGMPDAIVQNFGTSRDVIIRLPVKAEHTGG--NLSETVMTALKKDDPSVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ EL+ G++ ++ ++ ++ Y+ RF+W F + I + D+ LG Sbjct: 119 MRRVEFVGPQVGDELLENGLLAMLFVSMGIVAYLAFRFEWKFGVSCIIANLHDVLIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+ F EF+LT +AAVL ++GYSVN+ VV+ DR+R+N + +I+ +I ET+ Sbjct: 179 FSFFQWEFDLTVLAAVLAILGYSVNESVVISDRIRENFRKLRK-ADVTRVINNAITETMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R+V T + + V+ M ++GG + +FA+ + GI+ SSI IA+PILL + R Sbjct: 238 RTVITHGSTQLVVISMLLFGGEALHNFALALTIGILFGIYSSIMIASPILLLLGAKREDL 297 Query: 831 ARI 833 +I Sbjct: 298 VKI 300 >gi|15800136|ref|NP_286148.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 EDL933] gi|15829714|ref|NP_308487.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str. Sakai] gi|16128394|ref|NP_414943.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K-12 substr. MG1655] gi|74310978|ref|YP_309397.1| preprotein translocase subunit SecF [Shigella sonnei Ss046] gi|89107279|ref|AP_001059.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K-12 substr. W3110] gi|157156867|ref|YP_001461590.1| preprotein translocase subunit SecF [Escherichia coli E24377A] gi|157159929|ref|YP_001457247.1| preprotein translocase subunit SecF [Escherichia coli HS] gi|161486297|ref|NP_752453.2| preprotein translocase subunit SecF [Escherichia coli CFT073] gi|168749865|ref|ZP_02774887.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4113] gi|168756945|ref|ZP_02781952.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4401] gi|168761609|ref|ZP_02786616.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4501] gi|168768354|ref|ZP_02793361.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4486] gi|168776291|ref|ZP_02801298.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4196] gi|168783269|ref|ZP_02808276.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4076] gi|168786250|ref|ZP_02811257.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC869] gi|168800286|ref|ZP_02825293.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC508] gi|170021219|ref|YP_001726173.1| preprotein translocase subunit SecF [Escherichia coli ATCC 8739] gi|170079995|ref|YP_001729315.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K-12 substr. DH10B] gi|170684249|ref|YP_001742544.1| preprotein translocase subunit SecF [Escherichia coli SMS-3-5] gi|187730856|ref|YP_001879116.1| preprotein translocase subunit SecF [Shigella boydii CDC 3083-94] gi|188495767|ref|ZP_03003037.1| protein-export membrane protein SecF [Escherichia coli 53638] gi|191166755|ref|ZP_03028582.1| protein-export membrane protein SecF [Escherichia coli B7A] gi|191173507|ref|ZP_03035034.1| protein-export membrane protein SecF [Escherichia coli F11] gi|193065194|ref|ZP_03046267.1| protein-export membrane protein SecF [Escherichia coli E22] gi|193068694|ref|ZP_03049655.1| protein-export membrane protein SecF [Escherichia coli E110019] gi|194428793|ref|ZP_03061328.1| protein-export membrane protein SecF [Escherichia coli B171] gi|194432581|ref|ZP_03064867.1| protein-export membrane protein SecF [Shigella dysenteriae 1012] gi|194438905|ref|ZP_03070990.1| protein-export membrane protein SecF [Escherichia coli 101-1] gi|195938528|ref|ZP_03083910.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str. EC4024] gi|208806301|ref|ZP_03248638.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4206] gi|208816355|ref|ZP_03257534.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4045] gi|208822982|ref|ZP_03263300.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4042] gi|209396358|ref|YP_002269051.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4115] gi|209917621|ref|YP_002291705.1| preprotein translocase subunit SecF [Escherichia coli SE11] gi|215485490|ref|YP_002327921.1| preprotein translocase subunit SecF [Escherichia coli O127:H6 str. E2348/69] gi|217326541|ref|ZP_03442625.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. TW14588] gi|218552972|ref|YP_002385885.1| preprotein translocase subunit SecF [Escherichia coli IAI1] gi|218557318|ref|YP_002390231.1| preprotein translocase subunit SecF [Escherichia coli S88] gi|218688272|ref|YP_002396484.1| preprotein translocase subunit SecF [Escherichia coli ED1a] gi|218693870|ref|YP_002401537.1| preprotein translocase subunit SecF [Escherichia coli 55989] gi|218698686|ref|YP_002406315.1| preprotein translocase subunit SecF [Escherichia coli IAI39] gi|218703691|ref|YP_002411210.1| preprotein translocase subunit SecF [Escherichia coli UMN026] gi|238899697|ref|YP_002925493.1| SecYEG protein translocase auxillary subunit [Escherichia coli BW2952] gi|253774606|ref|YP_003037437.1| preprotein translocase subunit SecF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160475|ref|YP_003043583.1| preprotein translocase subunit SecF [Escherichia coli B str. REL606] gi|254791590|ref|YP_003076427.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str. TW14359] gi|256020376|ref|ZP_05434241.1| preprotein translocase subunit SecF [Shigella sp. D9] gi|256023974|ref|ZP_05437839.1| preprotein translocase subunit SecF [Escherichia sp. 4_1_40B] gi|260842607|ref|YP_003220385.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli O103:H2 str. 12009] gi|260853629|ref|YP_003227520.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli O26:H11 str. 11368] gi|260866567|ref|YP_003232969.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli O111:H- str. 11128] gi|261223886|ref|ZP_05938167.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str. FRIK2000] gi|261256400|ref|ZP_05948933.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str. FRIK966] gi|291281313|ref|YP_003498131.1| Protein-export membrane protein SecF [Escherichia coli O55:H7 str. CB9615] gi|293413663|ref|ZP_06656312.1| preprotein translocase SecF subunit [Escherichia coli B185] gi|297517228|ref|ZP_06935614.1| preprotein translocase subunit SecF [Escherichia coli OP50] gi|301025759|ref|ZP_07189273.1| protein-export membrane protein SecF [Escherichia coli MS 196-1] gi|306813125|ref|ZP_07447318.1| preprotein translocase subunit SecF [Escherichia coli NC101] gi|307137051|ref|ZP_07496407.1| preprotein translocase subunit SecF [Escherichia coli H736] gi|307312216|ref|ZP_07591852.1| protein-export membrane protein SecF [Escherichia coli W] gi|312964569|ref|ZP_07778825.1| protein-export membrane protein SecF [Escherichia coli 2362-75] gi|312970504|ref|ZP_07784685.1| protein-export membrane protein SecF [Escherichia coli 1827-70] gi|331656463|ref|ZP_08357425.1| protein-export membrane protein SecF [Escherichia coli TA206] gi|331661784|ref|ZP_08362707.1| protein-export membrane protein SecF [Escherichia coli TA143] gi|331666758|ref|ZP_08367632.1| protein-export membrane protein SecF [Escherichia coli TA271] gi|331681802|ref|ZP_08382435.1| protein-export membrane protein SecF [Escherichia coli H299] gi|84028693|sp|P0AG95|SECF_ECO57 RecName: Full=Protein-export membrane protein secF gi|84028694|sp|P0AG94|SECF_ECOL6 RecName: Full=Protein-export membrane protein secF gi|84028695|sp|P0AG93|SECF_ECOLI RecName: Full=Protein-export membrane protein secF gi|12513259|gb|AAG54756.1|AE005220_5 protein secretion, membrane protein [Escherichia coli O157:H7 str. EDL933] gi|581231|emb|CAA39635.1| unnamed protein product [Escherichia coli K-12] gi|1786610|gb|AAC73512.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K-12 substr. MG1655] gi|13359917|dbj|BAB33883.1| protein-export membrane protein secF [Escherichia coli O157:H7 str. Sakai] gi|73854455|gb|AAZ87162.1| SecF [Shigella sonnei Ss046] gi|85674549|dbj|BAE76189.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K12 substr. W3110] gi|157065609|gb|ABV04864.1| protein-export membrane protein SecF [Escherichia coli HS] gi|157078897|gb|ABV18605.1| protein-export membrane protein SecF [Escherichia coli E24377A] gi|169756147|gb|ACA78846.1| protein-export membrane protein SecF [Escherichia coli ATCC 8739] gi|169887830|gb|ACB01537.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K-12 substr. DH10B] gi|170521967|gb|ACB20145.1| protein-export membrane protein SecF [Escherichia coli SMS-3-5] gi|187427848|gb|ACD07122.1| protein-export membrane protein SecF [Shigella boydii CDC 3083-94] gi|187768264|gb|EDU32108.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4196] gi|188015915|gb|EDU54037.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4113] gi|188490966|gb|EDU66069.1| protein-export membrane protein SecF [Escherichia coli 53638] gi|188999400|gb|EDU68386.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4076] gi|189356032|gb|EDU74451.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4401] gi|189362402|gb|EDU80821.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4486] gi|189368089|gb|EDU86505.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4501] gi|189373576|gb|EDU91992.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC869] gi|189377423|gb|EDU95839.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC508] gi|190903266|gb|EDV62988.1| protein-export membrane protein SecF [Escherichia coli B7A] gi|190906216|gb|EDV65828.1| protein-export membrane protein SecF [Escherichia coli F11] gi|192927168|gb|EDV81789.1| protein-export membrane protein SecF [Escherichia coli E22] gi|192958057|gb|EDV88499.1| protein-export membrane protein SecF [Escherichia coli E110019] gi|194413096|gb|EDX29383.1| protein-export membrane protein SecF [Escherichia coli B171] gi|194419142|gb|EDX35225.1| protein-export membrane protein SecF [Shigella dysenteriae 1012] gi|194422199|gb|EDX38201.1| protein-export membrane protein SecF [Escherichia coli 101-1] gi|208726102|gb|EDZ75703.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4206] gi|208733003|gb|EDZ81691.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4045] gi|208737175|gb|EDZ84859.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4042] gi|209157758|gb|ACI35191.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC4115] gi|209744134|gb|ACI70374.1| protein-export membrane protein secF [Escherichia coli] gi|209744136|gb|ACI70375.1| protein-export membrane protein secF [Escherichia coli] gi|209744138|gb|ACI70376.1| protein-export membrane protein secF [Escherichia coli] gi|209744140|gb|ACI70377.1| protein-export membrane protein secF [Escherichia coli] gi|209744142|gb|ACI70378.1| protein-export membrane protein secF [Escherichia coli] gi|209910880|dbj|BAG75954.1| preprotein translocase SecF [Escherichia coli SE11] gi|215263562|emb|CAS07892.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli O127:H6 str. E2348/69] gi|217322762|gb|EEC31186.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str. TW14588] gi|218350602|emb|CAU96292.1| SecYEG protein translocase auxillary subunit [Escherichia coli 55989] gi|218359740|emb|CAQ97281.1| SecYEG protein translocase auxillary subunit [Escherichia coli IAI1] gi|218364087|emb|CAR01752.1| SecYEG protein translocase auxillary subunit [Escherichia coli S88] gi|218368672|emb|CAR16412.1| SecYEG protein translocase auxillary subunit [Escherichia coli IAI39] gi|218425836|emb|CAR06642.1| SecYEG protein translocase auxillary subunit [Escherichia coli ED1a] gi|218430788|emb|CAR11662.1| SecYEG protein translocase auxillary subunit [Escherichia coli UMN026] gi|222032204|emb|CAP74943.1| Protein-export membrane protein secF [Escherichia coli LF82] gi|238863515|gb|ACR65513.1| SecYEG protein translocase auxillary subunit [Escherichia coli BW2952] gi|242376187|emb|CAQ30878.1| secF, subunit of SecD-SecF-YajC-YidC Secretion Complex and Sec Protein Secretion Complex [Escherichia coli BL21(DE3)] gi|253325650|gb|ACT30252.1| protein-export membrane protein SecF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972376|gb|ACT38047.1| protein export protein SecF [Escherichia coli B str. REL606] gi|253976586|gb|ACT42256.1| protein export protein SecF [Escherichia coli BL21(DE3)] gi|254590990|gb|ACT70351.1| SecYEG protein translocase auxillary subunit [Escherichia coli O157:H7 str. TW14359] gi|257752278|dbj|BAI23780.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli O26:H11 str. 11368] gi|257757754|dbj|BAI29251.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli O103:H2 str. 12009] gi|257762923|dbj|BAI34418.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli O111:H- str. 11128] gi|260450404|gb|ACX40826.1| protein-export membrane protein SecF [Escherichia coli DH1] gi|281177579|dbj|BAI53909.1| preprotein translocase SecF [Escherichia coli SE15] gi|284920216|emb|CBG33275.1| protein-export protein [Escherichia coli 042] gi|290761186|gb|ADD55147.1| Protein-export membrane protein SecF [Escherichia coli O55:H7 str. CB9615] gi|291433721|gb|EFF06694.1| preprotein translocase SecF subunit [Escherichia coli B185] gi|294491094|gb|ADE89850.1| protein-export membrane protein SecF [Escherichia coli IHE3034] gi|299879986|gb|EFI88197.1| protein-export membrane protein SecF [Escherichia coli MS 196-1] gi|305853888|gb|EFM54327.1| preprotein translocase subunit SecF [Escherichia coli NC101] gi|306907718|gb|EFN38220.1| protein-export membrane protein SecF [Escherichia coli W] gi|307552314|gb|ADN45089.1| protein-export membrane protein SecF [Escherichia coli ABU 83972] gi|307628122|gb|ADN72426.1| preprotein translocase subunit SecF [Escherichia coli UM146] gi|309700671|emb|CBI99967.1| protein-export protein [Escherichia coli ETEC H10407] gi|310337153|gb|EFQ02291.1| protein-export membrane protein SecF [Escherichia coli 1827-70] gi|312290803|gb|EFR18680.1| protein-export membrane protein SecF [Escherichia coli 2362-75] gi|312944986|gb|ADR25813.1| preprotein translocase subunit SecF [Escherichia coli O83:H1 str. NRG 857C] gi|315059686|gb|ADT74013.1| SecYEG protein translocase auxillary subunit [Escherichia coli W] gi|315135091|dbj|BAJ42250.1| preprotein translocase [Escherichia coli DH1] gi|320173773|gb|EFW48956.1| Protein-export membrane protein SecF [Shigella dysenteriae CDC 74-1112] gi|320181609|gb|EFW56524.1| Protein-export membrane protein SecF [Shigella boydii ATCC 9905] gi|320192822|gb|EFW67462.1| Protein-export membrane protein SecF [Escherichia coli O157:H7 str. EC1212] gi|320201650|gb|EFW76226.1| Protein-export membrane protein SecF [Escherichia coli EC4100B] gi|320638398|gb|EFX08112.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str. G5101] gi|320643778|gb|EFX12901.1| preprotein translocase subunit SecF [Escherichia coli O157:H- str. 493-89] gi|320649129|gb|EFX17707.1| preprotein translocase subunit SecF [Escherichia coli O157:H- str. H 2687] gi|320656022|gb|EFX23938.1| preprotein translocase subunit SecF [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661172|gb|EFX28603.1| preprotein translocase subunit SecF [Escherichia coli O55:H7 str. USDA 5905] gi|320665148|gb|EFX32241.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str. LSU-61] gi|323152123|gb|EFZ38416.1| protein-export membrane protein SecF [Escherichia coli EPECa14] gi|323160484|gb|EFZ46432.1| protein-export membrane protein SecF [Escherichia coli E128010] gi|323184765|gb|EFZ70136.1| protein-export membrane protein SecF [Escherichia coli 1357] gi|323191327|gb|EFZ76590.1| protein-export membrane protein SecF [Escherichia coli RN587/1] gi|323379748|gb|ADX52016.1| protein-export membrane protein SecF [Escherichia coli KO11] gi|323938594|gb|EGB34843.1| protein-export membrane protein SecF [Escherichia coli E1520] gi|323943215|gb|EGB39371.1| protein-export membrane protein SecF [Escherichia coli E482] gi|323945310|gb|EGB41366.1| protein-export membrane protein SecF [Escherichia coli H120] gi|323952979|gb|EGB48847.1| protein-export membrane protein SecF [Escherichia coli H252] gi|323958602|gb|EGB54305.1| protein-export membrane protein SecF [Escherichia coli H263] gi|323963395|gb|EGB58957.1| protein-export membrane protein SecF [Escherichia coli H489] gi|323965361|gb|EGB60819.1| protein-export membrane protein SecF [Escherichia coli M863] gi|323972259|gb|EGB67469.1| protein-export membrane protein SecF [Escherichia coli TA007] gi|324116893|gb|EGC10806.1| protein-export membrane protein SecF [Escherichia coli E1167] gi|326341169|gb|EGD64961.1| Protein-export membrane protein SecF [Escherichia coli O157:H7 str. 1044] gi|326346055|gb|EGD69794.1| Protein-export membrane protein SecF [Escherichia coli O157:H7 str. 1125] gi|327254727|gb|EGE66343.1| protein-export membrane protein SecF [Escherichia coli STEC_7v] gi|330910203|gb|EGH38713.1| protein-export membrane protein SecF [Escherichia coli AA86] gi|331054711|gb|EGI26720.1| protein-export membrane protein SecF [Escherichia coli TA206] gi|331060206|gb|EGI32170.1| protein-export membrane protein SecF [Escherichia coli TA143] gi|331065982|gb|EGI37866.1| protein-export membrane protein SecF [Escherichia coli TA271] gi|331081004|gb|EGI52169.1| protein-export membrane protein SecF [Escherichia coli H299] gi|332085841|gb|EGI91005.1| protein-export membrane protein SecF [Shigella dysenteriae 155-74] gi|332094559|gb|EGI99605.1| protein-export membrane protein SecF [Shigella boydii 5216-82] gi|332341772|gb|AEE55106.1| preprotein translocase subunit SecF [Escherichia coli UMNK88] gi|333008604|gb|EGK28072.1| protein-export membrane protein SecF [Shigella flexneri VA-6] gi|333010851|gb|EGK30277.1| protein-export membrane protein SecF [Shigella flexneri K-272] gi|333021350|gb|EGK40603.1| protein-export membrane protein SecF [Shigella flexneri K-227] Length = 323 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L I +I ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q +++K Sbjct: 65 PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + +++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|144899892|emb|CAM76756.1| Protein export membrane protein [Magnetospirillum gryphiswaldense MSR-1] Length = 314 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 168/306 (54%), Gaps = 4/306 (1%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL-A 585 LI F+ R ++ I + + T G N+GIDF GGI + V Sbjct: 1 MSFYANLIARTPKFDFVGKRIPAFFLTAALIIGTFVSIATKGFNFGIDFAGGILVEVQKV 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 P D++ +R L +L +G++S Q F ++ + + + K + Sbjct: 61 EGPADMAHMRDVLGNLGLGEVSLQQFGESGRDVMVRVQKQDGDE--KAQMAALAKVKETL 118 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + EIVGPK+ EL R G + V++S +A+ Y+W RF+W F +GA+ D+ Sbjct: 119 GGGYEYRRVEIVGPKVGDELKRDGALAVVLSVLAIAAYVWFRFEWQFGVGALIATFHDVI 178 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T GFF++ G+EFNLT+VAA+LT+ GYS+ND VV+YDR+R+N++ Y ++S DL+++++ Sbjct: 179 LTFGFFSVTGMEFNLTSVAAILTIAGYSINDTVVIYDRVRENLRKY-KTLSLYDLLNQAV 237 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R+ T F++V+ + + GG V+ FA + +G+VV SS+++A P+L++ Sbjct: 238 NETLARTFLTVATVFLTVIALLLLGGEVLHGFAASLLWGLVVGTFSSMYVAIPVLIYFNL 297 Query: 826 WRAKNA 831 K Sbjct: 298 RVGKER 303 >gi|229586352|ref|YP_002844853.1| preprotein translocase subunit SecF [Rickettsia africae ESF-5] gi|228021402|gb|ACP53110.1| Protein-export membrane protein secF [Rickettsia africae ESF-5] Length = 308 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 174/306 (56%), Gaps = 2/306 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + L+P+ I FM + SI+ S+ S + + N+GIDF GGI + V Sbjct: 1 MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R L L IG++ QNF E++ +R + + + + Sbjct: 61 DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKGFLQSNF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S +A+++YIW+RF+WYF LG + L+ D+ Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + D+I+ SI Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITDIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL + Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298 Query: 826 WRAKNA 831 + Sbjct: 299 RKFNKK 304 >gi|34580892|ref|ZP_00142372.1| protein-export membrane protein secF [Rickettsia sibirica 246] gi|28262277|gb|EAA25781.1| protein-export membrane protein secF [Rickettsia sibirica 246] Length = 308 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + L+P+ I FM + SI+ S+ S + + N+GIDF GGI + V Sbjct: 1 MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFISIGIYKFNFGIDFAGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R L L IG++ QNF E++ +R + + + + Sbjct: 61 DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKGFLQSNF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S +A+++YIW+RF+WYF LG + L+ D+ Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ SI Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL + Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298 Query: 826 WRAKNA 831 + Sbjct: 299 RKFNKK 304 >gi|294788538|ref|ZP_06753780.1| protein-export membrane protein SecD [Simonsiella muelleri ATCC 29453] gi|294483415|gb|EFG31100.1| protein-export membrane protein SecD [Simonsiella muelleri ATCC 29453] Length = 614 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 171/501 (34%), Positives = 287/501 (57%), Gaps = 21/501 (4%) Query: 29 QSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85 Q+ + P + K N + LGLDLRGG +++VD + L Y+ ++R L+K+ Sbjct: 106 QNQISNSPEWLAKMGANPMFLGLDLRGGVEFIMQVDMKAALEKTLDRYAGDVRRELRKQK 165 Query: 86 IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 I + ++R+ N I + F D ++ +G+N + I++ Sbjct: 166 IRIGTIRKTANSIVIPFQDQADANKSLPELQKLFEGMN------------LVVDGNNITL 213 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 L + + Q+ A++Q++ + R++++G SE IQ+ G+ RI++Q+PG D ++ + + Sbjct: 214 TLPETLLTQIRHDAVKQNINTLHNRVNELGTSEPVIQQAGADRIMVQIPGMTDTAKAKDI 273 Query: 206 LGTTAKMSFHKVLPNNSKKGF--MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 +G TA + V G L D++G+QYL+ +VE++G ++N A A+ D Sbjct: 274 IGRTATLEVRMVHDGGLNSDGTIPEGYEVLADNEGHQYLISKQVELTGDNINSAQASVDD 333 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSGKAQI 319 +T +P V ++ D G+ F ++T N GK +A+VL + V+TAP IN+ I G+ QI Sbjct: 334 RTKRPAVALALDGTGSSIFADLTTANTGKRMAMVLIDQGKSEVITAPNINEPITGGRVQI 393 Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 +G + A +A +LR+GSL + IV+ER +G LG+++I KG + V G + + +FM Sbjct: 394 TGMASDAEAQDVALLLRSGSLAAPMEIVQERTIGPSLGAENITKGIHSTVWGFMAVAIFM 453 Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439 IV Y +GL++ ++ N++ A+LS+L TLTLP IA + L +G+A+DSN+L+NERIR Sbjct: 454 IVYYRFFGLLSTVALSTNLLFLFAILSMLQVTLTLPGIAAMALTLGMAIDSNVLINERIR 513 Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499 EE R Q ++ GF A++TI DSN+T+LIA V L FG GAVRGFAI I+ S Sbjct: 514 EELRHGQKAQVAIKEGFDHAWNTILDSNLTSLIAGVALLIFGSGAVRGFAIVHCFGIMTS 573 Query: 500 MFTAISIVRAMMIFIIRYKKM 520 +F+++ + RAM+ ++ Sbjct: 574 IFSSVVVFRAMVNAFYGKRRK 594 Score = 142 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 95/247 (38%), Gaps = 6/247 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + + L S N + +A + V + Sbjct: 352 FADLTTANTGKRMAMVLIDQGKSEVITAPNINEPITGGRVQITGMASDAEAQDVALLLRS 411 Query: 645 IV--PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 I +GP + E I KGI + +A+ I++ + +++ F L + L Sbjct: 412 GSLAAPMEIVQERTIGPSLGAENITKGIHSTVWGFMAVAIFMIVYYRF-FGLLSTVALST 470 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 ++ ++ + L +AA+ +G +++ V++ +R+R+ ++ + I Sbjct: 471 NLLFLFAILSMLQVTLTLPGIAAMALTLGMAIDSNVLINERIREELR---HGQKAQVAIK 527 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + + + +++ + I+ + + ++G + FAI FGI+ + SS+ + ++ Sbjct: 528 EGFDHAWNTILDSNLTSLIAGVALLIFGSGAVRGFAIVHCFGIMTSIFSSVVVFRAMVNA 587 Query: 823 IYDWRAK 829 Y R K Sbjct: 588 FYGKRRK 594 >gi|24374629|ref|NP_718672.1| preprotein translocase subunit SecF [Shewanella oneidensis MR-1] gi|24349256|gb|AAN56116.1|AE015748_4 protein-export membrane protein SecF [Shewanella oneidensis MR-1] Length = 315 Score = 218 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 97/291 (33%), Positives = 163/291 (56%), Gaps = 3/291 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + F++ +S + + SI LL T GLN+G+DF GG + + + PVDL+ RS Sbjct: 9 RTVNFLKHALPVSIMSAVLVLGSIVLLATKGLNWGLDFTGGTVVEMSFSTPVDLNQFRSQ 68 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + + QN+ ++ LVRL + G S V + K ++ P + E V Sbjct: 69 LTTPETSSAVVQNYGSSRDVLVRLPVKEGISSDVQVV--EIVKFAQQLDPNVVQKRVEFV 126 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ +EL +G + V+++ I ++IYI RF+W A GA+ L D+ TLG F+L +E Sbjct: 127 GPQVGKELAEQGGLAVLVALICIMIYIAFRFEWRLATGAVAALAHDVMVTLGVFSLTQME 186 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +A VLT++GYS+ND +VV+DR+R+N S ++++ SI +T+ R++ T Sbjct: 187 FDLTVLAGVLTVVGYSLNDTIVVFDRVRENFLKMRKSEP-EEVVNVSITQTMSRTIITMG 245 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + V+ + + GGS+I FA + GI V SS+++A + + + R Sbjct: 246 TTLVVVVALFLSGGSMIHGFAAALLLGISVGTYSSVYVATYLAIKLGVNRE 296 >gi|197283991|ref|YP_002149863.1| preprotein translocase subunit SecD [Proteus mirabilis HI4320] gi|194681478|emb|CAR40320.1| protein-export membrane protein SecD [Proteus mirabilis HI4320] Length = 615 Score = 218 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 162/524 (30%), Positives = 274/524 (52%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD + + + D LR+ L+ EGI Sbjct: 104 NLAPATPKWLEAIGGEPMKLGLDLRGGVHFLMEVDMETALGKLQEQNVDSLRTLLRDEGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+R+ N + + F ++ + +D + + + + Sbjct: 164 PYSSIRKTDNYGVEIRFRNADDRSKASDYLARR-----------NQDLIFRNGDNNSLKA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + ++A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 IFTDERLRDARTYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N G DG ++ +V ++G H+ +T+ Sbjct: 273 LGATATLEFRLVNTNVDPSALETGRIPGDSEVKYTRDGRPTILYKRVVLTGDHITDSTSQ 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D +P V IS D G T+DN+GKP+A + + Sbjct: 333 ADEYG-QPQVSISLDSAGGSIMSNFTKDNVGKPMATLFVEYKDSGKRDENDRAILVKNEE 391 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINVANIQTRLGNNFRITGISNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIT 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GL+ V FMI+ Y K+G++A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 452 QGLEACLWGLIASVAFMIIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI V+L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIIDANLTTLITAVILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT + + SMFTAI RA++ + K++K + I Sbjct: 572 TGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 615 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 95/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D N ++ + + N + L G S A + + Sbjct: 369 FVEYKDSGKRDENDRAILVKNEEVINVANIQTRLGNNFRITGISNANEARQLSLLLRAGA 428 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA + ++ I ++ F + A T L+ ++ Sbjct: 429 LIAPIQIVEERTIGPTLGLQNITQGLEACLWGLIASVAFMIIYYR-KFGVIASTALLANL 487 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ S + I + Sbjct: 488 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++ I+ + + G I FAI A G+ + ++I I+ + Sbjct: 545 GYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLL 604 Query: 824 YDWRAKNA 831 Y + Sbjct: 605 YGGKRIKK 612 Score = 46.6 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 76/255 (29%), Gaps = 38/255 (14%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ IGLL ALPN + + Sbjct: 4 RYPLWKYLMLIFAILIGLLYALPNLYGEDPA---------------------VQIT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD----KVTL 117 L RS L KE I S+ I F++ + + + Sbjct: 42 GTAANEQTLDQV----RSLLDKEKIEAKSIALENGAILARFSNPDIQLRAREALLPALGD 97 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQR 170 + PK + ++ + L + +++ + EQ+++ +R Sbjct: 98 KFVVALNLAPATPKWLEAIGGEPMKLGLDLRGGVHFLMEVDMETALGKLQEQNVDSLRTL 157 Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT-AKMSFHKVLPNNSKKGFMFG 229 + GI S+I++ ++ + I+ D S+ L + F N+ K F Sbjct: 158 LRDEGIPYSSIRKTDNYGVEIRFRNADDRSKASDYLARRNQDLIFRNGDNNSLKAIFTDE 217 Query: 230 VRFLRDSDGNQYLVE 244 + Q + Sbjct: 218 RLRDARTYAVQQNIT 232 >gi|320157292|ref|YP_004189671.1| protein-export membrane protein SecD [Vibrio vulnificus MO6-24/O] gi|319932604|gb|ADV87468.1| protein-export membrane protein SecD [Vibrio vulnificus MO6-24/O] Length = 607 Score = 218 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 156/524 (29%), Positives = 275/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D RS L+ I Sbjct: 93 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRDAKI 152 Query: 87 GVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+R + I + D ++ L+ D + Sbjct: 153 RYRSIRPVGSDAIEVLLRDGEELSQAKRELEK--------LHPDMAFVESDKDGRYALIA 204 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 205 TFTETRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264 Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G +D +G +++ +V +SG + ++ Sbjct: 265 LGATATLEFREVDDKADLAAAASGRAPAGSEIKQDRNGRPVVLKKRVILSGASITD-ASS 323 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + ++ NIGK +A V Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMAAFSKKNIGKLMATVFAEYKDSGRKSPEGKVILTKHEE 383 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A + G+V ++LF ++ Y K+GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 444 MGIQACIWGMVAVMLFTLLYYRKFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 503 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 LTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRINKLSI 607 Score = 149 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 91/213 (42%), Gaps = 5/213 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I +A Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMLFTLLYYR-KFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ + + I + ++ I+ + + G I FA Sbjct: 515 LIFERIREELRE---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ GI+ + ++I I+ +Y + N Sbjct: 572 VTLSIGILTSMFTAIIGTRCIVNLLYGGKRINK 604 >gi|291288352|ref|YP_003505168.1| protein-export membrane protein SecD [Denitrovibrio acetiphilus DSM 12809] gi|290885512|gb|ADD69212.1| protein-export membrane protein SecD [Denitrovibrio acetiphilus DSM 12809] Length = 515 Score = 218 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 187/539 (34%), Positives = 289/539 (53%), Gaps = 41/539 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 N +++ L LP ++ LGLDL+GG H+VL VD Sbjct: 2 NLKLRWAFIAIVIAWALFSMLP---------------LNEKLKLGLDLQGGMHVVLGVDT 46 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQG 121 D V ++ +++LR L E + ++ +++S E + + Sbjct: 47 DKAVEAKVEAMANQLRKELATEKVDFAFVQKTDMKTLSISLRSKEAFEQAKEIIAENYPT 106 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + + + + E +S +L + + +V +A+EQS+E++R RID+ G+SE I Sbjct: 107 LQN----------ISISKENTLSYMLESSAVTRVRDYAVEQSLEVVRNRIDEFGVSEPVI 156 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD---- 237 QR G ++++QLPG DP R L+G TA++ F+ V N S + G D Sbjct: 157 QRQGKKQVVVQLPGVTDPDRAIDLIGKTAQLKFYIVDDNVSAQEAEGGNIPFDDIILYQK 216 Query: 238 -----------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 ++V+ ++G +L A N + P+V D G++ F E+T Sbjct: 217 QTDDITGQTIGRVPFVVKKDAVLTGEYLVDAEVNLSTTYNTPIVQFRLDAAGSKLFEELT 276 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 DNIG +A+VLD V +APVI IP G A I G T++ A LA +LRAGSLP ++I Sbjct: 277 ADNIGNRMAIVLDDNVYSAPVIRSRIPGGSAYIDGINTMQEAKDLAIVLRAGSLPAPVSI 336 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 E R VG LG DSI G A + GL LIV FM+V Y G+VA+ ++ N ++ L +S Sbjct: 337 EENRTVGPSLGQDSINSGVKAALIGLALIVAFMLVYYRMAGIVANIALATNFVIILGFMS 396 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 GATLTLP IAGI+L IG++VD+N+L+ ER+REE R ++ +L+ G+ +A+STI D+ Sbjct: 397 QFGATLTLPGIAGIILTIGMSVDANVLIFERVREELRMGRTPMNALEYGYGKAFSTIMDA 456 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 NIT +IA +VLF FG G ++GFA+T+ + IL S+FTAI + +A+ +R K + + I Sbjct: 457 NITTIIAAIVLFQFGTGPIKGFAVTLSIGILASLFTAIFVTKAVFWTFLRSKDVTKLSI 515 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 91/205 (44%), Gaps = 4/205 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 Y G + Q + + + +I+ VGP + ++ I G+ +I ++ Sbjct: 308 YIDGINTMQEAKDLAIVLRAGSLPAPVSIEENRTVGPSLGQDSINSGVKAALIGLALIVA 367 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ + ++ + A L + LGF + FG L +A ++ IG SV+ V++++ Sbjct: 368 FMLVYYRM-AGIVANIALATNFVIILGFMSQFGATLTLPGIAGIILTIGMSVDANVLIFE 426 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ +++ + + ++ + + ++ I+ + + +G I FA+ ++ Sbjct: 427 RVREELRM---GRTPMNALEYGYGKAFSTIMDANITTIIAAIVLFQFGTGPIKGFAVTLS 483 Query: 803 FGIVVAASSSIFIAAPILLFIYDWR 827 GI+ + ++IF+ + + Sbjct: 484 IGILASLFTAIFVTKAVFWTFLRSK 508 >gi|90579383|ref|ZP_01235193.1| protein export protein SecF [Vibrio angustum S14] gi|90440216|gb|EAS65397.1| protein export protein SecF [Vibrio angustum S14] Length = 315 Score = 218 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 166/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 L+ + FMR + S++ + SI + T GLN+G+DF GG + V P Sbjct: 1 MRELLNANKVVDFMRWSKFAFIFSLIMIMGSIATISTKGLNWGLDFTGGTLIEVSFKEPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L ++R +LE GD QNF ++ +VRLQ + G + +++ Sbjct: 61 NLPLIRESLEKAGFGDAVVQNFGTARDVMVRLQPREG-VKGEVLGNQILDALKDGTAQSV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + ++I+ + +L+Y+ +RF+W A GA+ +L DI T+G Sbjct: 120 EMRRIEFVGPNVGDELAEAGGMAILIALLCILLYVSLRFEWRLAAGAVLSLAHDIIITVG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ +E +LT VAA+LT++GYS+ND +VV+DR+R+N + S ++++ SI++TL Sbjct: 180 IFSVLQVEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKG-SPSEIMNCSISQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GGS+I FA+ + GI + SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFAQGGSMIHGFALALLIGITIGTYSSIYVASALALKLGITRE 297 >gi|283956489|ref|ZP_06373969.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 1336] gi|283792209|gb|EFC30998.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 1336] Length = 323 Score = 218 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 155/285 (54%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FMR RF + +S + SI LL+ GL YGIDF GG + + ++ +R LE Sbjct: 10 YDFMRMRFTAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 G + G + + + + + ++ ++VGP Sbjct: 70 KQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ + +S IA+LIYI +RF+W FAL AI + I D+ TLG +LF I+ N Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AAVLT++GYS+ND ++++DR+R+ +K + +I++S++ TL R+V TS Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSRTVLTSGLT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +V+ + +GG +I F++ + GI+ SSIF+A+P LL+ Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPTLLWFK 291 >gi|158424517|ref|YP_001525809.1| SecF protein [Azorhizobium caulinodans ORS 571] gi|158331406|dbj|BAF88891.1| SecF protein [Azorhizobium caulinodans ORS 571] Length = 321 Score = 218 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 103/292 (35%), Positives = 178/292 (60%), Gaps = 5/292 (1%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DLSVVR 595 I FMR R +S L ++ ++ + T G N GIDF+GG + +++ DLSV+R Sbjct: 10 HTNIGFMRLRRVTFPLSALMTLLAVAMFVTVGFNLGIDFRGGTLIEAQSSQQAADLSVLR 69 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 L +GD+ Q F ++ L+R+ D Q +++ V+ + T++ E Sbjct: 70 EQLTDSDLGDVQIQEFGSARDVLIRVGRVGADDAGQQAIVDKVRTAL---GQDFTVRRVE 126 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP +S EL+R+ I+ +++ A+ +LIY+W RF+W FA+GA+ T DI TL ++ G Sbjct: 127 TVGPSVSSELVRQSILALVLGAVVVLIYLWFRFEWQFAVGALVTTAHDIFVTLLIYSALG 186 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 I+F+LT++AA+LT++GYS+ND VVVYDR+R+ ++ Y I +L+D ++N T R++ Sbjct: 187 IDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRY-KKIPLPELLDIAVNATFSRTIIV 245 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 S+ F++ + + ++GG V+ F++ MA G+++ S+IF+AAPIL+ + Sbjct: 246 SLTTFLATMALYLFGGEVLRGFSLAMAVGVIIGTYSTIFVAAPILIHLGLRS 297 >gi|89072682|ref|ZP_01159247.1| protein export protein SecD [Photobacterium sp. SKA34] gi|89051502|gb|EAR56956.1| protein export protein SecD [Photobacterium sp. SKA34] Length = 617 Score = 218 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 154/523 (29%), Positives = 284/523 (54%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + + LGLDLRGG H ++EVD D ++ L + R+ L++E I Sbjct: 104 NLAASTPAWLESIGASPMKLGLDLRGGVHFLMEVDMDAAMDKLLGQQEETFRTELREEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ + ++ + + D E + L+ D ++ Sbjct: 164 RYRAISKTKDSVQVRLRDEAQLEQAEVALEK--------LHPDMLFTTSKINGRYVLTAK 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A++Q++ I+R R++++G++E +QR G++RI+++LPG QD +R +++L Sbjct: 216 FTEERLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQGANRIVVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G DG +++ +V ++G H+ + ++ Sbjct: 276 GATATLEFREVDSEADLAAAAAGRVPAGSEVKMTRDGRPAVLKKRVILAGSHITDSNSSA 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 D +P V+IS D G + +++NIGK +A V + Sbjct: 336 DEYG-RPQVNISLDTEGGSKMTAFSKNNIGKLMATVFTEYKDSGKRTPEGKVILTKHEEV 394 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A L+ +LRAG+L ++IVEER +G +G +I Sbjct: 395 INQATIQSALGRSFRITGIDSQAEAHNLSLLLRAGALIAPISIVEERTIGPSMGQQNIDM 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y +G++A+ ++ +N++L + ++S++ AT+TLP IAGIVL Sbjct: 455 GVQACIWGMVAVMLFTLLYYRGFGMIANLALMMNLVLIIGIMSMIPGATMTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ +S ++ G+ A+STI D+NIT LI ++LF G Sbjct: 515 TVGMAVDANVLIFERIREELREGRSPQQAIQQGYGNAFSTIADANITTLITAIILFAVGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI RA++ I K++ + I Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIIGTRAVVNLIYGGKRVDKLSI 617 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 82/174 (47%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + ++ I G+ I +A++++ + ++ F + A L++++ +G ++ Sbjct: 442 TIGPSMGQQNIDMGVQACIWGMVAVMLFTLLYYR-GFGMIANLALMMNLVLIIGIMSMIP 500 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G L +A ++ +G +V+ V++++R+R+ ++ S + I + Sbjct: 501 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQGYGNAFSTIAD 557 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I+ + + G I FA+ ++ GI+ + ++I ++ IY + Sbjct: 558 ANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNLIYGGKR 611 Score = 42.8 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 80/290 (27%), Gaps = 39/290 (13%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ IGLL ALPN + + A G+ + + Sbjct: 4 RYPLWKNLMVLFALIIGLLYALPNVYGEDPAIQITGAR-------------GASVNM--- 47 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + LKK I S+ + + + F D+ + + D Sbjct: 48 ----------SALDTVTEDLKKNNIPYKSVVFEKGSVLVRFNDTDTQISARDI------- 90 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 LN + + +V + ++ + ++ + + ++ + + Sbjct: 91 ----LNSELGDDYVVALNLAASTPAWLESIGASPMKLGLDLRGGV--HFLMEVDMDAAMD 144 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + LG + ++ R R + T + ++ + + D Sbjct: 145 KLLGQQEETFRTELREEKIRYRAISKTKDSVQVRLRDEAQLEQAEVALEKLHPDMLFTTS 204 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + + ++ + I + + E G Sbjct: 205 KINGRYVLTAKFTEERLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQG 254 >gi|113461455|ref|YP_719524.1| preprotein translocase subunit SecF [Haemophilus somnus 129PT] gi|112823498|gb|ABI25587.1| protein translocase subunit secF [Haemophilus somnus 129PT] Length = 313 Score = 218 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 96/302 (31%), Positives = 156/302 (51%), Gaps = 5/302 (1%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 +I FM+ R+WG SI+ + +FT G N+G+DF GG + + Sbjct: 1 MHEYKGVILPFKLTPFMKYRYWGYAFSIIVTAVCFFFIFTKGFNWGLDFTGGTVIDTHFS 60 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 +P DL+ VRS L+ I Q G ++ ++RL + V +K + + Sbjct: 61 QPADLNKVRSTLKENGIESALVQTTGGVRDVMIRLPVV----ESSAEVGNKIKTILNSLD 116 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 I + E VGP + EL + I + + + +L YI RF+W GA+ L D+ Sbjct: 117 EGLEIHSIEFVGPNVGEELTQGAIYATLATLLMLLGYIAFRFEWRLGTGAVIALAHDVIV 176 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 TLG F+ F IE +LT VAA+L+++GYS+ND +VV+DR+R+N + I ++ID S+ Sbjct: 177 TLGVFSYFQIEMDLTFVAAILSVVGYSLNDSIVVFDRVRENFRKI-RRIDTVEIIDISLT 235 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +TL R++ TS+ V+ + +GG I SF++ + GI S+I+IA + L + Sbjct: 236 QTLARTLMTSITTLFVVIALFAFGGPTIHSFSLALLIGIAFGTYSTIYIAITLALDLGLK 295 Query: 827 RA 828 R Sbjct: 296 RE 297 >gi|237808773|ref|YP_002893213.1| protein-export membrane protein SecD [Tolumonas auensis DSM 9187] gi|237501034|gb|ACQ93627.1| protein-export membrane protein SecD [Tolumonas auensis DSM 9187] Length = 617 Score = 218 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 165/523 (31%), Positives = 283/523 (54%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D+ +N + + R+ L+++GI Sbjct: 104 NLAPATPEWLTSIGASPLKLGLDLRGGVHFLMEVDMDEAINKAQEQLVQDFRTSLREDGI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R+ + ++F DS ++ + + D + + Sbjct: 164 RYAGVRRAAGDVVVAFRDSDTQQKGLAHLRKRHIDLTLTDYEDKGQFWV--------KAS 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ V A+EQ++ IIR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 MSEAKQKSVTEDALEQNITIIRNRVNELGVAEPLVQRQGTARIVVELPGIQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V N M G D +G +++ ++ ++G H+ G++++ Sbjct: 276 GATATLEFRLVDENADAAAAMNGQVPPNSELFYDRNGRPVVLQKRIILTGDHITGSSSSA 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV-------------- 307 D +P V I D +G R T+D+IGK +A V Sbjct: 336 DEYG-RPQVSIKLDGVGGNRMSTATKDSIGKAMASVFIEYKPVGEPGADGKRRIEKHEEV 394 Query: 308 ----INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G T + A L+ +LR+G+L + IVEER +G +G +I Sbjct: 395 INVATIQSRLGSDFRITGIDTTQEAHNLSLLLRSGALTAPIQIVEERTIGPSMGQANIDS 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A+ G +++V+FM + Y +G+VA+ ++ NV+L + ++S++ AT+TLP IAGIVL Sbjct: 455 GLSALGMGTLILVIFMAIYYKLFGVVANIALMFNVVLMIGVMSMIPGATMTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R + V ++ +G+ RA++TI DSNIT I ++LF G Sbjct: 515 TLGMAVDANVLIYERIREELRAGRGVQQAIHLGYERAFATIADSNITTFITALILFAVGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G VRGFA+ + + IL SMFTAI+ RA++ I +K+K + I Sbjct: 575 GPVRGFALVLMIGILCSMFTAITGSRAIVNLIWGGRKVKDLSI 617 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 87/205 (42%), Gaps = 6/205 (2%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 Q + + + I +GP + + I G+ + + + ++I++ I Sbjct: 414 DTTQEAHNLSLLLRSGALTAPIQIVEERTIGPSMGQANIDSGLSALGMGTLILVIFMAIY 473 Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 +K F + A L+ ++ +G ++ G L +A ++ +G +V+ V++Y+R+R+ Sbjct: 474 YKL-FGVVANIALMFNVVLMIGVMSMIPGATMTLPGIAGIVLTLGMAVDANVLIYERIRE 532 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++ + I +++ FI+ L + G + FA+ + GI+ Sbjct: 533 ELRA---GRGVQQAIHLGYERAFATIADSNITTFITALILFAVGTGPVRGFALVLMIGIL 589 Query: 807 VAASSSIFIAAPIL-LFIYDWRAKN 830 + ++I + I+ L + K+ Sbjct: 590 CSMFTAITGSRAIVNLIWGGRKVKD 614 Score = 45.1 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + + IG L + PN + + + G D ++VD Sbjct: 4 RYPLWKYLMVAFVVIIGTLYSAPNLYGEDPALQVSAIR-------GHD--------VKVD 48 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D ++ L I + S N+I + F ++ + + VT L Sbjct: 49 -----------TLDTVKKSLDTAKISIKSAVLENNQILVRFNNTDDQLQARELVTQAL 95 >gi|261346390|ref|ZP_05974034.1| protein-export membrane protein SecD [Providencia rustigianii DSM 4541] gi|282565708|gb|EFB71243.1| protein-export membrane protein SecD [Providencia rustigianii DSM 4541] Length = 604 Score = 218 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 153/517 (29%), Positives = 270/517 (52%), Gaps = 35/517 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 ++ A+ + LGLDLRGG H ++EVD D + + D LR+ L++ GI S+R Sbjct: 99 PKWLEALGGEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNMDGLRNDLRQAGIAYSSIR 158 Query: 93 QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + + + + F ++ + + + ++ + V++ Sbjct: 159 KGSDYSVEVRFRNADDRSLAEKTLERKY-----------PDLVFSDGSDNTMIAVMTDER 207 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + + ++A+ Q++ IIR R++Q+G++E +QR G+ RI+++LPG QD +R +++LG TA Sbjct: 208 LREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATAT 267 Query: 212 MSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V + G D DG Y++ +V ++G H+ +T+ D + Sbjct: 268 LEFRLVNTSVDSAAAESGRIPGDSEIKYDRDGTPYVLYKRVVLTGDHITDSTSETDENGY 327 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV-----------------LTAPVIN 309 V G+ + + ++ + + Sbjct: 328 PQVSIGLDSPGGSIMSDFTRDNQDKLMATLFVEYKDSGKKDAAGRAILVKDEKVINAARI 387 Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369 QA K +I+G A L+ +LRAG+L + IVEER +G LG +I +G A + Sbjct: 388 QARFGSKFRITGIDNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLKACI 447 Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAV 428 AGL+ +LFMI+ Y K+GL+A ++ N+++ + ++SLL ATLT+P IAGIVL + +AV Sbjct: 448 AGLLASILFMIIYYRKFGLIASSALMANLVMIVGVMSLLPGATLTMPGIAGIVLTLAVAV 507 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 D+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI ++L+ G G+++GF Sbjct: 508 DANVLINERIKEELRNGRSVQQAIHEGYKGAFSSITDANLTTLITAIILYAVGTGSIKGF 567 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AIT + + SMFTAI RA++ + K++ + I Sbjct: 568 AITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 85/205 (41%), Gaps = 5/205 (2%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + + ++ I +GP + + I +G+ I +A ++++ I Sbjct: 401 DNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLKACIAGLLASILFMIIY 460 Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F L A + L+ ++ +G +L G + +A ++ + +V+ V++ +R+++ Sbjct: 461 YR-KFGLIASSALMANLVMIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE 519 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++ S + I + ++ I+ + + G I FAI A G+ Sbjct: 520 ELR---NGRSVQQAIHEGYKGAFSSITDANLTTLITAIILYAVGTGSIKGFAITTAIGVA 576 Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831 + ++I I+ +Y + N Sbjct: 577 TSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|223040455|ref|ZP_03610729.1| protein-export membrane protein SecF [Campylobacter rectus RM3267] gi|222878305|gb|EEF13412.1| protein-export membrane protein SecF [Campylobacter rectus RM3267] Length = 323 Score = 218 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 160/285 (56%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM R+ + S + S+ L+ T G NYGIDF GG + V + V L +R+ L Sbjct: 10 YNFMGKRYIALAFSAILFFGSLFLIATKGFNYGIDFSGGTLIQVKYDSAVSLDKIRAALA 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + + G + ++ + ++ + I+ T++VGP Sbjct: 70 KDEAYKNASVTEFGSAEEVTIRFSGANSNLGSD--VGASVAELLKDTGKFEIRRTDVVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ + IS + +LIYI RF+W FA+ A+ + + D+ T+G + F I+ N Sbjct: 128 KVGDELREKGVMALAISLVGILIYIAFRFEWRFAMAAVASEVHDVVITMGAISFFAIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AA+LT+IGYS+ND ++V+DR+R+N+K + S +I++S++ TL R++ TS Sbjct: 188 LDTLAAILTVIGYSLNDTIIVFDRIRENIKT-SKSTQLDAIINESVSATLTRTILTSCTT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 I+V+ + ++GG +I F++ + GIV+ SSIF+AAP+LL+ Sbjct: 247 LITVVVLFLFGGDMIHGFSLALIVGIVIGTLSSIFVAAPMLLWFK 291 >gi|284006395|emb|CBA71631.1| protein-export membrane protein [Arsenophonus nasoniae] Length = 324 Score = 218 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 95/301 (31%), Positives = 170/301 (56%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L I FMR + GISI I SI ++ G N+G+DF GG + + ++ Sbjct: 7 YTVEQLNHGRKVIDFMRWDYLAFGISIALFILSITVISLKGFNWGLDFTGGTVIEINLSQ 66 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R++L + + QNF ++ ++RL G Q ++ ++ Sbjct: 67 PADLDKIRASLANNGYREPLIQNFGSSRDIMIRLPPTEG-VAGQEIGKSIISVINKDVDE 125 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +TI+ E VGP + EL + G + ++ + I +LIY+ RF+W A GA+ +L D+ T Sbjct: 126 QATIKRIEFVGPSVGSELAQTGAMALLAALICILIYVGFRFEWRLAAGAVISLAHDVVIT 185 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE ++T VA+++++IGYS+ND +VV DR+R+N + S+ ++++ S+ + Sbjct: 186 LGIVSLFQIEVDMTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIVNVSLTQ 244 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + + VL + ++GGS++ F++ M G+ + SSI++A+ + L + R Sbjct: 245 TLSRTLITSGTSLLVVLMLYLFGGSILKGFSLVMLIGVTIGTVSSIYVASALALKMGMKR 304 Query: 828 A 828 Sbjct: 305 E 305 >gi|30061904|ref|NP_836075.1| preprotein translocase subunit SecF [Shigella flexneri 2a str. 2457T] gi|56479648|ref|NP_706297.2| preprotein translocase subunit SecF [Shigella flexneri 2a str. 301] gi|110804431|ref|YP_687951.1| preprotein translocase subunit SecF [Shigella flexneri 5 str. 8401] gi|30040148|gb|AAP15881.1| membrane protein [Shigella flexneri 2a str. 2457T] gi|56383199|gb|AAN42004.2| membrane protein [Shigella flexneri 2a str. 301] gi|110613979|gb|ABF02646.1| protein secretion, membrane protein [Shigella flexneri 5 str. 8401] gi|281599741|gb|ADA72725.1| Protein-export membrane protein SecF [Shigella flexneri 2002017] gi|313646974|gb|EFS11431.1| protein-export membrane protein SecF [Shigella flexneri 2a str. 2457T] gi|332760689|gb|EGJ90977.1| protein-export membrane protein SecF [Shigella flexneri 4343-70] gi|332761718|gb|EGJ91997.1| protein-export membrane protein SecF [Shigella flexneri 2747-71] gi|332764286|gb|EGJ94522.1| protein-export membrane protein SecF [Shigella flexneri K-671] gi|333007981|gb|EGK27457.1| protein-export membrane protein SecF [Shigella flexneri K-218] gi|333022059|gb|EGK41304.1| protein-export membrane protein SecF [Shigella flexneri K-304] Length = 323 Score = 218 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L I +I ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q +++K Sbjct: 65 PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + +++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALTHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|312880421|ref|ZP_07740221.1| protein translocase subunit secF [Aminomonas paucivorans DSM 12260] gi|310783712|gb|EFQ24110.1| protein translocase subunit secF [Aminomonas paucivorans DSM 12260] Length = 291 Score = 218 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 92/292 (31%), Positives = 147/292 (50%), Gaps = 8/292 (2%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM+ R +GIS + S+ L+ GLN +D+ GGI L V V++ VR Sbjct: 7 WHIPFMKYRRLALGISCALMVLSLGLVIAKGLNLSVDYTGGILLQVEFPAAVEVGQVREA 66 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + G + Q + + V + + + E V Sbjct: 67 LAGVGQGQATIQAYSDRG-------VIVRFQSQSGENRKQVLGALGQRFGKIQVLRLETV 119 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + EL ++ V +I++ +L Y+ RF++ F + AI +L+ D+ LG ++L G E Sbjct: 120 GPVVGEELRQQAFVALILALGGILAYMAFRFQFRFGMAAIFSLLHDVILMLGVYSLTGKE 179 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 ++ +AA+LT++GYS+ND +VV DR+R+N K DL+D+S+N+TL R++ TS+ Sbjct: 180 VGVSFIAAILTVVGYSLNDSIVVLDRVRENWKEL-RGKGIVDLVDESVNQTLSRTINTSL 238 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + VL M GG VI +FA GI V SSI+IA+ ++ Y K Sbjct: 239 TTLLPVLAMYFLGGEVISNFAFAFLVGITVGTYSSIYIASAVVAEWYLRSPK 290 >gi|126739015|ref|ZP_01754709.1| protein-export membrane protein SecF [Roseobacter sp. SK209-2-6] gi|126719632|gb|EBA16340.1| protein-export membrane protein SecF [Roseobacter sp. SK209-2-6] Length = 322 Score = 218 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 172/310 (55%), Gaps = 7/310 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P F VG S L + S+ GLN+GIDF+GG + + + Sbjct: 1 MRLRLVPKETRFDFFSKWKVWVGFSALLMVLSLVSFGLQGLNFGIDFRGGTTVRTESTQA 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642 VD+ R + L +GDIS ++R+Q Q V+ ++ + Sbjct: 61 VDVGAYRDAMAPLGLGDISITEVFDPTFEEDQHVAMIRIQAQESGEAISGEVIGKLQAAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 P + E VGPK+S EL++ I+ V ++ A+LIYIW+RF+W FALGA+ L+ Sbjct: 121 DTAAPGIKFVSVESVGPKVSGELVQTAILAVALAIAAVLIYIWLRFEWQFALGAVAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I+F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y ++++ Sbjct: 181 DVVLTIGIFSALQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKKA-LDEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINETL R+V TS+ ++++ + V GG VI F M +G+VV SSIF+A+ ILL Sbjct: 240 LSINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVVVGTYSSIFVASTILLR 299 Query: 823 IYDWRAKNAR 832 + R + + Sbjct: 300 LGVKRDWSKK 309 >gi|150390113|ref|YP_001320162.1| protein-export membrane protein SecF [Alkaliphilus metalliredigens QYMF] gi|149949975|gb|ABR48503.1| protein-export membrane protein SecF [Alkaliphilus metalliredigens QYMF] Length = 297 Score = 218 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 143/284 (50%), Gaps = 4/284 (1%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 + IS I + L G+N GIDF GG + + V +R + G Sbjct: 6 NKKIWFSISAAVIILGLVLGLARGINVGIDFTGGTLMEIELYEYVSTDEIREITDQYDPG 65 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 + +R D Q R+ + K +P + GP + RE Sbjct: 66 ASINHLGNERTTIQIRT---IEDYNNQERMEIFNQFKAEYDLPDNEPSYASQFGPSVGRE 122 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 + + ++ V+ISA+ ML YI RF+ F L AIT L+ D+ L +++ I N VA Sbjct: 123 IQNRAMLAVVISALGMLAYITYRFELTFGLAAITALVHDVLIVLAVYSILRIPVNSPFVA 182 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT++GYS+ND +VV+DR+R+N+ + +F + + SI++T+ RS+ TS+ ++++ Sbjct: 183 AILTILGYSINDTIVVFDRVRENV-KHMKKSNFAQVANDSISQTVVRSINTSVTTLVTIV 241 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + V G S I FA+P+ G++ SSIFIA+P+ + + + + Sbjct: 242 ALYVLGVSQIREFALPLIAGVISGTYSSIFIASPVWVMLKERQK 285 >gi|89072683|ref|ZP_01159248.1| protein export protein SecF [Photobacterium sp. SKA34] gi|89051503|gb|EAR56957.1| protein export protein SecF [Photobacterium sp. SKA34] Length = 315 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 167/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 L+ + FMR + S++ + SI + T GLN+G+DF GG + V +P Sbjct: 1 MRELLNANKVVDFMRWSKFAFIFSLIMIMGSIATISTKGLNWGLDFTGGTLIEVSFEKPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L ++R +LE GD QNF ++ +VRLQ + G + +++ Sbjct: 61 NLPLIRESLEKAGFGDAVVQNFGTARDVMVRLQPREG-VKGEVLGNQILDALKDGTAQSV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + ++I+ + +L+Y+ +RF+W A GA+ +L DI T+G Sbjct: 120 EMRRIEFVGPNVGDELAEAGGMAILIALLCILLYVSLRFEWRLAAGAVLSLAHDIIITVG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ +E +LT VAA+LT++GYS+ND +VV+DR+R+N + S ++++ SI++TL Sbjct: 180 IFSVLQVEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKG-SPAEIMNSSISQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + GGS+I FA+ + GI + SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFAQGGSMIHGFALALLIGITIGTYSSIYVASALALKLGITRE 297 >gi|217978988|ref|YP_002363135.1| protein-export membrane protein SecF [Methylocella silvestris BL2] gi|217504364|gb|ACK51773.1| protein-export membrane protein SecF [Methylocella silvestris BL2] Length = 318 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 178/302 (58%), Gaps = 2/302 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L P+ FMR R S + SI S+ L T G+N+GIDF GG + + A Sbjct: 1 MKLLRLAPENTKFPFMRFRRISYPFSAVMSIISVVLFLTLGMNFGIDFSGGTLVELRAKS 60 Query: 588 PV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 D++ +R+ E++ +G++ Q F + +R Q + + + + Sbjct: 61 GAADIAQLRAIAENMHVGEVEVQGFGQPSDVTLRFGVQHSEQGDAAAQEAAIARVKDAVG 120 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 + E+VGP++S EL++ G +GV+++ +A+L Y+W RF+W FA+GAI + D+ Sbjct: 121 NDYEFRRVEVVGPRVSGELVQSGTLGVVVAIVAVLCYLWFRFEWQFAVGAIIATMHDLLL 180 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T+GFF+L +EFN T++AA+LT++GYS+N+ VVV DR+R+ M+ Y + +LID S+N Sbjct: 181 TVGFFSLTRLEFNTTSIAAILTIVGYSLNETVVVLDRIREMMRKYRK-MPTDELIDLSVN 239 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 L R++ T+ F+++L + V+GG VI SF+I M +GI VA SS+FI +P+L+++ Sbjct: 240 AVLPRTIMTATTVFLALLSLVVFGGQVIRSFSIAMIWGIFVATYSSVFICSPMLIYLGLR 299 Query: 827 RA 828 Sbjct: 300 NE 301 >gi|257094092|ref|YP_003167733.1| preprotein translocase subunit SecD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046616|gb|ACV35804.1| protein-export membrane protein SecD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 625 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 180/517 (34%), Positives = 278/517 (53%), Gaps = 27/517 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + LL + P +L + LGLDLRGG H +L+VD + L Sbjct: 105 VVALNLLSSSPQWLTNLHA---------LPMYLGLDLRGGVHFLLQVDMKGALTKRLDSI 155 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 S +LRS L+ + + + + ++T+ F D + + + L + Sbjct: 156 SGDLRSLLRDKNVRHAGITREGERLTIRFRDGDTRAKARIVLED--NQSDLLLADQGE-- 211 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + ++ L I ++ A++Q+M + RI+++G++E I + G+ RI++QL Sbjct: 212 ----GDDLKLVATLKPEAIKRIQEFAVKQNMTTLSNRINELGVAEPVIAQQGADRIVVQL 267 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNN------SKKGFMFGVRFLRDSDGNQYLVEDKV 247 PG QD ++ + +LG TA + V FG + G LV +V Sbjct: 268 PGVQDTAKAKDILGRTATLEIRMVEETAGALEAAQAGQVPFGTELYVERGGLPLLVRKQV 327 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VL 303 ++G L A FD +TH+P V ++ D GAR F +VTRDN+GK +A+VL + V+ Sbjct: 328 VLTGDRLTDAQPGFDNQTHEPAVHLTLDSAGARIFKDVTRDNVGKRMAIVLIEKGKGEVV 387 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 TAPVI I G+ QISG + A A +LRAGSL + I+EER +G LG+++I K Sbjct: 388 TAPVIRAEIGGGRVQISGRMSTMEANDTALLLRAGSLAAPMEIIEERAIGPSLGAENIKK 447 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G + + G I +FMI Y +GLV+ ++ N++ +ALLSLL ATLTLP IA I L Sbjct: 448 GFHSTMWGFAAIAVFMIAYYVLFGLVSVIALAANLLFLVALLSLLQATLTLPGIAAIALA 507 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+A+D+N+L+NERIREE R + ++ G+ RA+ TI DSNIT LIA + L FG G Sbjct: 508 LGMAIDANVLINERIREELRNGSTPQLAIHTGYERAFGTILDSNITTLIAGIALLIFGSG 567 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 VRGFA+ L IL S+F+A+ + RA++ I ++ Sbjct: 568 PVRGFAVVHCLGILTSLFSAVVVSRALINLIYGNRRK 604 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 85/208 (40%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + E I+KG + A+ Sbjct: 401 VQISGRMSTMEANDTALLLRAGSLAAPMEIIEERAIGPSLGAENIKKGFHSTMWGFAAIA 460 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + F L ++ L ++ + +L L +AA+ +G +++ V++ Sbjct: 461 VFMIAYY-VLFGLVSVIALAANLLFLVALLSLLQATLTLPGIAAIALALGMAIDANVLIN 519 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I G + +++ I+ + + ++G + FA+ Sbjct: 520 ERIREELR---NGSTPQLAIHTGYERAFGTILDSNITTLIAGIALLIFGSGPVRGFAVVH 576 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + S++ ++ ++ IY R K Sbjct: 577 CLGILTSLFSAVVVSRALINLIYGNRRK 604 Score = 47.0 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 25/120 (20%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L ++ +GL+ LPNF +S ++V Sbjct: 3 RYPLWKYVLVAIALVLGLVYTLPNFFGESPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + S L+ I + N + + ++ + D + Sbjct: 38 SAKATLKVDEKTRERVASTLRSASIENSGIFLDSNGVKVRLLNADSQLQAKDLLEKQFNP 97 >gi|296314980|ref|ZP_06864921.1| protein-export membrane protein SecD [Neisseria polysaccharea ATCC 43768] gi|296838181|gb|EFH22119.1| protein-export membrane protein SecD [Neisseria polysaccharea ATCC 43768] Length = 617 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 167/506 (33%), Positives = 278/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQTENSLTIPLQDAGDVQKALPQLRRLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L L+ +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPAKLREALEGNVLSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSTNILFLIGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 154 bits (387), Expect = 8e-35, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSTNILFLIGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.1 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIAFTIVVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 ++ + LK+ GI M + N + + F D+ + D + L Sbjct: 47 ---------DQTQSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDIIENTL 95 >gi|255321489|ref|ZP_05362647.1| protein-export membrane protein SecF [Campylobacter showae RM3277] gi|255301345|gb|EET80604.1| protein-export membrane protein SecF [Campylobacter showae RM3277] Length = 323 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 162/285 (56%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM R+ +GIS + S+ L+ T G NYGIDF GG + V + V L +R+ L Sbjct: 10 YDFMSKRYIALGISAVLFFGSLFLMATKGFNYGIDFSGGTLIQVKYDSAVSLDKIRAALA 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + + G + ++ + ++ + I+ T++VGP Sbjct: 70 KNEAYKNASVTEFGSAEEVTIRFSGASSNLGSD--VGASVAELLKDTGKFEIRRTDVVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ + IS + +LIYI RF+W FA+ A+ + I D+ T+G + F I+ N Sbjct: 128 KVGDELREKGVMALAISLVGILIYIAFRFEWRFAMAAVASEIHDVVITMGAISFFAIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AA+LT++GYS+ND ++V+DR+R+N+K + S +I++S++ TL R++ TS Sbjct: 188 LDTLAAILTVVGYSLNDTIIVFDRIRENIKT-SKSTHLDTIINESVSATLTRTILTSGTT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 I+V+ + ++GG +I F++ + GIV+ SSIF+AAP+LL+ Sbjct: 247 LITVVVLFLFGGDMIHGFSLALIVGIVIGTLSSIFVAAPMLLWFK 291 >gi|296446020|ref|ZP_06887970.1| protein-export membrane protein SecF [Methylosinus trichosporium OB3b] gi|296256538|gb|EFH03615.1| protein-export membrane protein SecF [Methylosinus trichosporium OB3b] Length = 322 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 113/306 (36%), Positives = 187/306 (61%), Gaps = 5/306 (1%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L P+ FMR R S + SI S+ L HG+N+GIDF GG + V A Sbjct: 1 MKLLRLAPENTKFPFMRFRRVSYPFSAVLSIASVLLFILHGMNFGIDFAGGTVIEVRAKS 60 Query: 588 -PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 +++ +R +E+L +GD+ Q F E + +R Q G AQ +E V+ + Sbjct: 61 GHAEMATLRKTVETLALGDVEVQAFGNEADATLRFGLQDGGDAAQQAAVEKVRSAV---G 117 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 ++ E+VGP++S EL++ G +GV++S +A+L Y+W RF+W FA+GA+ + D+ Sbjct: 118 GDYDLRRVEVVGPRVSGELVQSGTLGVVLSIVAVLTYLWFRFEWQFAIGAVIATMHDLLL 177 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T+GFF++ +EFN T++AA+LT++GYS+N+ VVV DR+R+ M+ Y + +ID SIN Sbjct: 178 TVGFFSITQLEFNTTSIAAILTIVGYSLNETVVVLDRIREMMRKY-KKMPTDQMIDLSIN 236 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 L R++ T+ F+++L +A++GG VI SF++ M +GI VA SS+FI +P+L+++ Sbjct: 237 AVLPRTIMTATTVFLALLSLAIFGGHVIRSFSLAMIWGIFVATYSSVFICSPMLIYLGLR 296 Query: 827 RAKNAR 832 +N + Sbjct: 297 SDENDK 302 >gi|57237974|ref|YP_179223.1| preprotein translocase subunit SecF [Campylobacter jejuni RM1221] gi|86150822|ref|ZP_01069038.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 260.94] gi|86153179|ref|ZP_01071384.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613248|ref|YP_001000770.1| preprotein translocase subunit SecF [Campylobacter jejuni subsp. jejuni 81-176] gi|148926008|ref|ZP_01809694.1| protein-export membrane protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157415353|ref|YP_001482609.1| preprotein translocase subunit SecF [Campylobacter jejuni subsp. jejuni 81116] gi|167005686|ref|ZP_02271444.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 81-176] gi|205355839|ref|ZP_03222608.1| protein export membrane protein [Campylobacter jejuni subsp. jejuni CG8421] gi|57166778|gb|AAW35557.1| protein-export membrane protein SecF [Campylobacter jejuni RM1221] gi|85841992|gb|EAQ59238.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 260.94] gi|85844064|gb|EAQ61274.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249301|gb|EAQ72262.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 81-176] gi|145845487|gb|EDK22579.1| protein-export membrane protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157386317|gb|ABV52632.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 81116] gi|205346273|gb|EDZ32907.1| protein export membrane protein [Campylobacter jejuni subsp. jejuni CG8421] gi|307747994|gb|ADN91264.1| Protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni M1] gi|315058533|gb|ADT72862.1| Protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni S3] gi|315932230|gb|EFV11173.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 327] Length = 323 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 155/285 (54%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FMR RF + +S + SI LL+ GL YGIDF GG + + ++ +R LE Sbjct: 10 YDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 G + G + + + + + ++ ++VGP Sbjct: 70 KQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ + +S IA+LIYI +RF+W FAL AI + I D+ TLG +LF I+ N Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AAVLT++GYS+ND ++++DR+R+ +K + +I++S++ TL R+V TS Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSRTVLTSGLT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +V+ + +GG +I F++ + GI+ SSIF+A+P LL+ Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPTLLWFK 291 >gi|332992257|gb|AEF02312.1| preprotein translocase subunit SecD [Alteromonas sp. SN2] Length = 615 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 165/523 (31%), Positives = 280/523 (53%), Gaps = 38/523 (7%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 N P + + + + LGLDLRGG H ++EVD + + L+ R+ Sbjct: 99 YFVAMNLAPDTP--EWLEGLGGTPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRT 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L++EGI + Q ++ + ++F D + + + L T Sbjct: 157 SLREEGIRYRGVTQKEDYVEITFRDEETLDKAEFFLRN-----------QNRDLTLNQTD 205 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + + V S+ + ++ +A++Q++ IIR R++Q+G++E +Q+ G+ RI++QLPG QD Sbjct: 206 DLVLRAVFSEAKLQEIRENAVKQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDT 265 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254 +R +++L TA + F V N + G + + D G L+E ++ ++G H+ Sbjct: 266 ARAKEILNATATLEFRMVDQKNDVRDAISGRVPAGSQVIEDQQGIPQLLEKRIMLTGSHI 325 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------- 301 + + P V+IS D G + TR NIGKP+A V Sbjct: 326 ID-ANSGVDEYGLPNVNISLDSEGGNKMSRSTRGNIGKPMATVFIEYKSNGERNKDDKLI 384 Query: 302 -----VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + +A K QI+G + + A LA +LRAG+L + IVEER VG L Sbjct: 385 FEKHEQVISVATIRAQLGSKFQITGLDSPKEARDLALLLRAGALIAPIQIVEERTVGPSL 444 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415 G ++I GT AIV GL+ +++FM++ Y +G+VA+ ++ N+++ + ++S++ ATLTLP Sbjct: 445 GKENIELGTQAIVYGLLAVLVFMLIYYKAFGIVANIALITNLVMIVGIMSMIPGATLTLP 504 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 +AGIVL +G+AVD+N+L+ ERIREE R +S ++ G+ A+STI D+NIT IA + Sbjct: 505 GMAGIVLTVGMAVDANVLIFERIREEIRDGRSPQQAIHHGYDSAFSTILDANITTFIAGL 564 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 +LF G G ++GF+IT+ + I SMFTAI + R ++ + + Sbjct: 565 ILFAVGTGPIKGFSITLMIGIATSMFTAILLTRVIVNAVWGGR 607 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 91/207 (43%), Gaps = 5/207 (2%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + ++ I VGP + +E I G ++ +A+L+++ I Sbjct: 411 DSPKEARDLALLLRAGALIAPIQIVEERTVGPSLGKENIELGTQAIVYGLLAVLVFMLIY 470 Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 +K F + A LI ++ +G ++ G L +A ++ +G +V+ V++++R+R+ Sbjct: 471 YK-AFGIVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIRE 529 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++ S + I + + ++ FI+ L + G I F+I + GI Sbjct: 530 EIRD---GRSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMIGIA 586 Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833 + ++I + I+ ++ R ++ Sbjct: 587 TSMFTAILLTRVIVNAVWGGRRNVQKL 613 >gi|227358140|ref|ZP_03842481.1| protein-export membrane protein SecD [Proteus mirabilis ATCC 29906] gi|227161476|gb|EEI46513.1| protein-export membrane protein SecD [Proteus mirabilis ATCC 29906] Length = 604 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 162/524 (30%), Positives = 274/524 (52%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD + + + D LR+ L+ EGI Sbjct: 93 NLAPATPKWLEAIGGEPMKLGLDLRGGVHFLMEVDMETALGKLQEQNVDSLRTLLRDEGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+R+ N + + F ++ + +D + + + + Sbjct: 153 PYSSIRKTDNYGVEIRFRNADDRSKASDYLARR-----------NQDLIFRNGDNNSLKA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + ++A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 IFTDERLRDARTYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N G DG ++ +V ++G H+ +T+ Sbjct: 262 LGATATLEFRLVNTNVDPSALETGRIPGDSEVKYTRDGRPTILYKRVVLTGDHITDSTSQ 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D +P V IS D G T+DN+GKP+A + + Sbjct: 322 ADEYG-QPQVSISLDSAGGSIMSNFTKDNVGKPMATLFVEYKDSGKRDENDRAILVKNEE 380 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINVANIQTRLGNNFRITGISNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIT 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GL+ V FMI+ Y K+G++A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 441 QGLEACLWGLIASVAFMIIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI V+L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIIDANLTTLITAVILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT + + SMFTAI RA++ + K++K + I Sbjct: 561 TGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 604 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 95/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D N ++ + + N + L G S A + + Sbjct: 358 FVEYKDSGKRDENDRAILVKNEEVINVANIQTRLGNNFRITGISNANEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA + ++ I ++ F + A T L+ ++ Sbjct: 418 LIAPIQIVEERTIGPTLGLQNITQGLEACLWGLIASVAFMIIYYR-KFGVIASTALLANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ S + I + Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++ I+ + + G I FAI A G+ + ++I I+ + Sbjct: 534 GYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLL 593 Query: 824 YDWRAKNA 831 Y + Sbjct: 594 YGGKRIKK 601 >gi|296161043|ref|ZP_06843854.1| protein-export membrane protein SecD [Burkholderia sp. Ch1-1] gi|295888742|gb|EFG68549.1| protein-export membrane protein SecD [Burkholderia sp. Ch1-1] Length = 692 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 163/517 (31%), Positives = 269/517 (52%), Gaps = 24/517 (4%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 I + L A P +L + LGLDLRGG H +L+VD +N L Sbjct: 108 FIVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDS 158 Query: 73 YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 + + R+ L+ I + ++ + ++FAD +N + ++ + + Sbjct: 159 DASDARTLLRDNNIRDGGVNRVNQTVVINFADQATADNASKQLGRSISELQW-------A 211 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + ++ + V A++Q++ + R++++G++E IQ+ GS RI+++ Sbjct: 212 SQTSPDGGVQLVGTFTPTVQRAVQDAALKQNITTLHNRVNELGVAEPVIQQQGSDRIVVE 271 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248 LPG QD ++ + ++G TA + P N G + L+ ++ Sbjct: 272 LPGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQII 331 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 332 FTGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVASVSRDNIGKPMAMVLFEKGKGEVLT 390 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I KG Sbjct: 391 VATIQSELGDRFQITGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRKGF 450 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 ++V G I +FMI Y +G+++ + +N++L +A+LS+L ATLTLP IA I L +G Sbjct: 451 HSVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALG 510 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NER+REE R ++ G++ A++TI DSN+T LIA + L FG G V Sbjct: 511 MAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGIALLAFGSGPV 570 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 RGFAI + IL SMF+A+ R ++ KK Sbjct: 571 RGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 80/185 (43%), Gaps = 4/185 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + IRKG V+ A+ +++ + F + ++ L +++ + Sbjct: 429 MDIIEERTIGPSLGADNIRKGFHSVVWGFAAIAVFMIAYY-MLFGVISMIGLSVNLLLLI 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ + I Sbjct: 488 AVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGAPPQLAIQNGYAHA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ + + +G + FAI GI+ + S++F + I+ Y + Sbjct: 545 WATILDSNVTTLIAGIALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKK 604 Query: 829 KNARI 833 K + Sbjct: 605 KLKSL 609 Score = 40.1 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 29/123 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + IGL+ LPN ++ ++V Sbjct: 3 RYPLWKYAVMLVALVIGLVYTLPNLFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117 + + L I + + I + D+ + + D + Sbjct: 38 SGKATVKLDSTTLSAVEAALAANQIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQK 97 Query: 118 FLQ 120 L Sbjct: 98 SLN 100 >gi|157825289|ref|YP_001493009.1| preprotein translocase subunit SecF [Rickettsia akari str. Hartford] gi|166977666|sp|A8GM76|SECF_RICAH RecName: Full=Protein-export membrane protein secF gi|157799247|gb|ABV74501.1| preprotein translocase subunit SecF [Rickettsia akari str. Hartford] Length = 308 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 175/306 (57%), Gaps = 2/306 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + L+P+ I FM + SI+ S+ S + + N+GIDF GGI + V Sbjct: 1 MQIYPLRLLPNKIDFDFMNFKAVSYSFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R L L IG++ QNF E++ +R + + + + Sbjct: 61 DQAPDLPKMRGVLGELGIGEVVLQNFGSERDLSIRFGISS-EENLMKNIELIKASLQSSF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S +A+++YIW+RF+WYF LG + L+ D+ Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLSSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ SI Sbjct: 180 LALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL + Sbjct: 239 NETLSRTILTVITTLLANLALMLFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFAN 298 Query: 826 WRAKNA 831 + N Sbjct: 299 RKFNNK 304 >gi|303327876|ref|ZP_07358316.1| protein-export membrane protein SecD [Desulfovibrio sp. 3_1_syn3] gi|302862237|gb|EFL85171.1| protein-export membrane protein SecD [Desulfovibrio sp. 3_1_syn3] Length = 526 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 195/531 (36%), Positives = 288/531 (54%), Gaps = 18/531 (3%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W + + ++ L+ ALP+ + +P ++I+LGLDL+GG HL L VD Sbjct: 4 RWRLSIAIVVFLACLVYALPSL--PGIGTALERFLPSSKINLGLDLKGGIHLTLGVDVAK 61 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 V+ L + +LR + E + V R + L F R + DK+ L Sbjct: 62 AVSNSLALAGQDLRRLAQDEKVVVLRPRVVGGT-ALEFVLPRAENE--DKLKEILSRHFP 118 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 +L D + + + + ++ + A++Q++ IR RIDQ G++E I++ Sbjct: 119 QL--DVGTPHKGESGQLRYVAHFTAAEVTRLENMALDQALRTIRNRIDQFGVAEPDIRKQ 176 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL----------PNNSKKGFMFGVRFLR 234 +RI +QLPG DP R Q++G TA + FH V P + Sbjct: 177 AGNRIQVQLPGISDPRRAVQIIGQTAHLEFHLVRDDVDPGKAVLPTGVVSLPLLENTPGG 236 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 +Q VE ++G + A FD V ++F+ GAR F T +N+G+ + Sbjct: 237 QKKESQIAVEKDAMLTGEDVADARPAFDQMNK-AYVTLNFNARGARIFERATTENVGRRM 295 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A+VLDG+V +APVI + I G+A ISGNFT A LA +LRAGSLP ++++EER+VG Sbjct: 296 AIVLDGKVYSAPVIRERIGGGRASISGNFTTAEAQDLAIVLRAGSLPAPVSVLEERSVGP 355 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG +SI G A + G +VLFM V YG GL+AD + +++ +A ++ GATLTL Sbjct: 356 SLGQESIDSGVRAALVGAAAVVLFMAVYYGLSGLIADGMLCFTMLMVMAGMAAFGATLTL 415 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL IG+AVD+N+L+ ERIREE R S ++ GF RA +I DSN+T +IAT Sbjct: 416 PGIAGIVLTIGMAVDANVLIYERIREELRLGLSPLAAVKAGFDRAAISITDSNLTTIIAT 475 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+L+ FG G +RGFA+T+ L I+ SMFTAI + RA+ R+ K I I Sbjct: 476 VILYQFGTGPIRGFAVTLSLGIIASMFTAIFVSRAIFEEWARHCGPKGISI 526 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 80/170 (47%), Gaps = 4/170 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + +E I G+ ++ A A+++++ + + L A L + + A FG Sbjct: 352 SVGPSLGQESIDSGVRAALVGAAAVVLFMAVYYGLS-GLIADGMLCFTMLMVMAGMAAFG 410 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++Y+R+R+ ++L +S + + + Sbjct: 411 ATLTLPGIAGIVLTIGMAVDANVLIYERIREELRL---GLSPLAAVKAGFDRAAISITDS 467 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 ++ I+ + + +G I FA+ ++ GI+ + ++IF++ I Sbjct: 468 NLTTIIATVILYQFGTGPIRGFAVTLSLGIIASMFTAIFVSRAIFEEWAR 517 >gi|268592077|ref|ZP_06126298.1| protein-export membrane protein SecD [Providencia rettgeri DSM 1131] gi|291312472|gb|EFE52925.1| protein-export membrane protein SecD [Providencia rettgeri DSM 1131] Length = 604 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 162/524 (30%), Positives = 278/524 (53%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LR+ L++EGI Sbjct: 93 NLAPATPKWLEAIGGEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNMDGLRNDLRQEGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+R+ + + + F ++ + ++ + ++ + Sbjct: 153 AYSSIRKGNDYSVEVRFRNADDRSQAEKALSRKY-----------PDLVFSDGSDNTMIA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + ++A+ Q++ IIR R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMTDERLREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + G D +G Y++ +V ++G H+ +T+ Sbjct: 262 LGATATLEFRLVNTSVDSSAAESGRVPGDSEVKYDREGMPYVLYKRVILTGDHITDSTSE 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------------V 302 D +P V IS D G + TRDN K +A + Sbjct: 322 ADENG-QPQVSISLDSAGGSIMSDFTRDNQDKLMATLFVEYKDSGKKDATGRSILVKDEK 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + A K +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINAARISARFGSKFRITGITNGTEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL+ +LFMI+ Y K+GL+A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 441 QGLKACIAGLLASILFMIIYYRKFGLIASSALLANLVLIVGVMSLLPGATLTMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE + +SV ++ G+ A+S+I D+N+T LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELKNGRSVQQAIHEGYKGAFSSITDANLTTLITAIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 561 TGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 79/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ I +A ++++ I ++ F L A + L+ ++ +G +L Sbjct: 429 TIGPTLGMQNIEQGLKACIAGLLASILFMIIYYR-KFGLIASSALLANLVLIVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ +K S + I + Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSVQQAIHEGYKGAFSSITD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+ + ++I I+ +Y + N Sbjct: 545 ANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|82775686|ref|YP_402033.1| preprotein translocase subunit SecF [Shigella dysenteriae Sd197] gi|81239834|gb|ABB60544.1| protein secretion, membrane protein [Shigella dysenteriae Sd197] Length = 323 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L I +I ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q +++K Sbjct: 65 PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + +++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMTALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|157964178|ref|YP_001499002.1| preprotein translocase subunit SecF [Rickettsia massiliae MTU5] gi|157843954|gb|ABV84455.1| Protein-export membrane protein secF [Rickettsia massiliae MTU5] Length = 310 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 175/307 (57%), Gaps = 2/307 (0%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 I + L+P+ I FM + SI+ S+ S + + N+GIDF GGI + V Sbjct: 2 IMQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVR 61 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 ++ DL +R L L IG++ QNF E++ +R + + + + Sbjct: 62 LDQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKASLQSN 120 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 + + VGP++ R+LI G + ++ S +A+++YIW+RF+WYF LG + L+ D+ Sbjct: 121 FPYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDV 180 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ S Sbjct: 181 ILALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLS 239 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 INETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL Sbjct: 240 INETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFV 299 Query: 825 DWRAKNA 831 + + Sbjct: 300 NRKFNKK 306 >gi|313673203|ref|YP_004051314.1| protein translocase subunit secf [Calditerrivibrio nitroreducens DSM 19672] gi|312939959|gb|ADR19151.1| protein translocase subunit secF [Calditerrivibrio nitroreducens DSM 19672] Length = 304 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 114/304 (37%), Positives = 175/304 (57%), Gaps = 1/304 (0%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 LI + I F+ IS + + S+ L+FT GLN GIDF GG + + Sbjct: 1 MAQFLELIKNDSNIDFLGKAKLFFIISGVLIVISLFLIFTKGLNLGIDFSGGTVIQLKYE 60 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 +P DL+ +R + +L+IGD+S QNF + L+RL + + K + Sbjct: 61 KPADLNKLRQGIGNLKIGDVSIQNFGNPEEVLIRLGKTRDIPLEELSKTIRAKLAEIDPN 120 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 ++ E VGP++ EL K ++ ++ + I +LIY+ IRF+ FA+GAI L+ D+ Sbjct: 121 NKFIVERVEQVGPQVGSELQYKAMMALLYANIGVLIYVAIRFELIFAIGAILALVHDVII 180 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSI 765 TLGF +L EFNLT VAA+L LIGYS+ND +VV+DR+R+ +K I+ +D+++KSI Sbjct: 181 TLGFLSLTSKEFNLTVVAALLALIGYSLNDTIVVFDRIRERIKATANEKINIKDIMNKSI 240 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ TS+ F +VL + ++GG VI FA + GI+V SSI IA+ ++ I Sbjct: 241 NETLSRTIITSLLTFFTVLSLMIFGGEVINPFAFTLVIGIIVGTYSSIGIASGLVYLIKS 300 Query: 826 WRAK 829 R + Sbjct: 301 LRKR 304 >gi|268317010|ref|YP_003290729.1| protein-export membrane protein SecF [Rhodothermus marinus DSM 4252] gi|262334544|gb|ACY48341.1| protein-export membrane protein SecF [Rhodothermus marinus DSM 4252] Length = 308 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 94/296 (31%), Positives = 167/296 (56%), Gaps = 10/296 (3%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 I + F++ R S + + S+ L T GL GIDFKGG++ + R Sbjct: 1 MRIFENANYPFVQHRKKAYVFSGVLILLSLVSLVTRGLELGIDFKGGMEFIISGAREPGA 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + +R L + + + + E + L+R+ + + Q R++E ++++ E P + Sbjct: 61 TAIREALTPVLGTEPEVKTYGAE-DILIRVAAEGDINEVQRRIVETIRQRFPETQPE--V 117 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 T IVGP+ + +L R I ++ + + + +YI IRF+W F+LGA+ L D+ TLG F Sbjct: 118 VQTNIVGPRFAEDLKRGAIYSILGALLVIFVYILIRFEWRFSLGAVVALFHDVLITLGLF 177 Query: 712 AL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 +L F +E + T +AA LT++GYS+ND VVV+DR+R+ M ++ + F ++++ SI Sbjct: 178 SLLHGWLPFSLEIDQTIIAAFLTIVGYSLNDTVVVFDRIREYMNIF-KTKPFEEVVNLSI 236 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 N TL R++ TS + V+ + ++GG V+ F+ + GIV+ SSIF+A+P+++ Sbjct: 237 NTTLSRTIITSGTTLLVVVILFIFGGEVLRGFSFALIVGIVIGTYSSIFVASPVVI 292 >gi|116620402|ref|YP_822558.1| protein translocase subunit secF [Candidatus Solibacter usitatus Ellin6076] gi|116223564|gb|ABJ82273.1| protein translocase subunit secF [Candidatus Solibacter usitatus Ellin6076] Length = 410 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 70/192 (36%), Positives = 122/192 (63%), Gaps = 1/192 (0%) Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 K + + T++VGPK+ EL K ++ + + ML+YI RF+W + LGA+ + Sbjct: 198 KQESYLAPYKVIQTQMVGPKVGVELRTKAVLATLYALAGMLVYIAFRFEWIYGLGAVIAV 257 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 D T+G F++F E ++T +AA+LTL+GYS+ND +V++DR+R+N+K+ L Sbjct: 258 FHDTLITIGLFSIFHEEISMTVIAALLTLVGYSMNDTIVIFDRIRENLKIM-RREPLESL 316 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ++KS+N+TL R++ TS F++V+ + +WGG V+ F+ + GI+V SS+FIA+PI+ Sbjct: 317 MNKSVNQTLSRTIMTSGLTFLTVIALFIWGGPVLHGFSFALVCGIIVGTYSSVFIASPIV 376 Query: 821 LFIYDWRAKNAR 832 LF +++ + Sbjct: 377 LFWHNYTDSRRK 388 >gi|88596212|ref|ZP_01099449.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 84-25] gi|218562706|ref|YP_002344485.1| preprotein translocase subunit SecF [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|88191053|gb|EAQ95025.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 84-25] gi|112360412|emb|CAL35209.1| protein-export membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926321|gb|ADC28673.1| preprotein translocase subunit SecF [Campylobacter jejuni subsp. jejuni IA3902] gi|315929924|gb|EFV09082.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 305] Length = 323 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 156/285 (54%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FMR RF + +S + SI LL+ GL YGIDF GG + + ++ +R LE Sbjct: 10 YDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + G + G + + + + + ++ ++VGP Sbjct: 70 NQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ + +S IA+LIYI +RF+W FAL AI + I D+ TLG +LF I+ N Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AAVLT++GYS+ND ++++DR+R+ +K + +I++S++ TL R+V TS Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSRTVLTSGLT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +V+ + +GG +I F++ + GI+ SSIF+A+P LL+ Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPTLLWFK 291 >gi|189425067|ref|YP_001952244.1| preprotein translocase subunit SecF [Geobacter lovleyi SZ] gi|189421326|gb|ACD95724.1| protein-export membrane protein SecF [Geobacter lovleyi SZ] Length = 313 Score = 217 bits (552), Expect = 7e-54, Method: Composition-based stats. Identities = 94/297 (31%), Positives = 146/297 (49%), Gaps = 4/297 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSVV 594 F+ R IS + SI I + N GIDF GG + + ++P+ L+ Sbjct: 8 TNFDFIGKRNISFVISAIISIIGIIAIIQMFRGAANMGIDFTGGTSVQLKFDKPLALADA 67 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R L S I ++ Q LV+L + V + + +++T Sbjct: 68 RKALHSGGIAELELQEVKEGNKLLVKLPRKSALVVGKAAEVVPAALVKAYPGLQVVVEST 127 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 +GP I +L + IV V IS + ++ YI RF + F +GAI + DI + LF Sbjct: 128 TEIGPSIGDKLRKDTIVAVAISMLGIICYIAWRFDFKFGVGAIVATLHDILAMFAAYYLF 187 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G EFNL + AVLT+ GYS+ D VVV+DR+R+N+ S + + SINE L RS+ Sbjct: 188 GKEFNLLFITAVLTIAGYSLTDTVVVFDRIRENLHKDLKG-SLHKIFNTSINEVLSRSII 246 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 TS+ F++ + + VWGG VI F+ + GI+V SS+F+A+P++L + Sbjct: 247 TSLTTFLAAIALFVWGGEVIHDFSFALLVGIIVGVYSSVFVASPVVLLLEQRAMNKQ 303 >gi|84688040|ref|ZP_01015901.1| protein-export membrane protein SecF [Maritimibacter alkaliphilus HTCC2654] gi|84663946|gb|EAQ10449.1| protein-export membrane protein SecF [Rhodobacterales bacterium HTCC2654] Length = 322 Score = 217 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 112/301 (37%), Positives = 174/301 (57%), Gaps = 7/301 (2%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 L+P + F + +G+S + SI GLN+GIDF+GG + + VD+ Sbjct: 5 LVPKETNVDFFSRSWLSLGLSGALMVISIVAFLVFGLNFGIDFRGGTSIRTQSTEAVDVG 64 Query: 593 VVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 R + L +GD E +VR+Q Q GD ++ V+ +T Sbjct: 65 AYRDAIAPLGLGDVAISEVFDPSFGPDENVAMVRIQSQDGDEAISVETIQAVEDALTAYD 124 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 P T + E VGPK+S ELI I V + +LIYIW+RF+W F+LGA+ LI D+T Sbjct: 125 PNITFPSVESVGPKVSGELIWTAIEAVAAAMATVLIYIWLRFEWQFSLGAVAALIHDVTL 184 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T+G F+LF I+F L +AA+LT++GYS+ND VVV+DR+R+N++ + + +++++ SIN Sbjct: 185 TIGVFSLFQIQFGLPIIAALLTIVGYSLNDTVVVFDRVRENLRRF-KKLDLKEVLNLSIN 243 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 ETL R++ TS+ I+++ + V GG VI +F M +G+VV SS+F+A+ ILL + Sbjct: 244 ETLSRTMMTSVTTLIALIALFVLGGDVIRNFVFAMIWGVVVGTYSSVFVASAILLRLGVK 303 Query: 827 R 827 R Sbjct: 304 R 304 >gi|283834274|ref|ZP_06354015.1| protein-export membrane protein SecD [Citrobacter youngae ATCC 29220] gi|291069798|gb|EFE07907.1| protein-export membrane protein SecD [Citrobacter youngae ATCC 29220] Length = 604 Score = 217 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 168/524 (32%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D ++ + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F DS ++ ++ Q ++ + + Sbjct: 153 PYTTVRKEDNYGLSITFRDSNARDEAISYLSKRHQ-----------DLVISSQGSNALRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE +SV +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRSVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + L+ ++ +G +L Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + S + I++ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAINEGYAGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601 >gi|78485675|ref|YP_391600.1| protein-export membrane protein SecD [Thiomicrospira crunogena XCL-2] gi|78363961|gb|ABB41926.1| protein-export membrane protein SecD [Thiomicrospira crunogena XCL-2] Length = 625 Score = 217 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 164/523 (31%), Positives = 281/523 (53%), Gaps = 38/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H +++VD + V Y DE++ ++ I Sbjct: 112 NLAPATPDILRAVGGEPMYLGLDLRGGVHFLMDVDMEAAVQKTYNRYVDEVKGAFREARI 171 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ + + + F D++ ++ G + VD + + + Sbjct: 172 RYLSVSYETDHLMIKFRDAKSVSAAQAEMEKQFPGEFNLAPVDGQ---------NALELR 222 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L I++ ++A++Q++ +R RI+++G++E IQ+ G RI++QLPG QD ++ +++L Sbjct: 223 LQPKTIEEAKTYALKQNITTLRNRINELGVAEPVIQQQGDRRIVVQLPGVQDTAKAKEIL 282 Query: 207 GTTAKMSFHKVLPN------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 G TA + F V G R DG L++ + +SG ++ A + Sbjct: 283 GATATLEFRLVEERGDAYRAEKTGYAPNGSRLYHFRDGRPILLKRSIIVSGDNVINAQSG 342 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT---------------- 304 + ++ V ++ D G R+ T++NIG +AVV + Sbjct: 343 IETESGSAQVTVTLDGAGGRKMLATTKENIGHRMAVVYIENRVETIEKNGEKVKKRITTK 402 Query: 305 ---APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + + QI+G + + A LA +LRAG+L + IVEER VG LG D+I Sbjct: 403 DVINAAVIRGQFANRFQITGLDSPQEAQDLALLLRAGALAAPMEIVEERTVGPSLGQDNI 462 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 +G +++ G +L+++ M+ Y G++A+ ++ LN+IL +A+LSLL ATLTLP IAGIV Sbjct: 463 NQGMMSVIVGFLLVLVIMVWRYKTLGMIANMALTLNLILIVAVLSLLQATLTLPGIAGIV 522 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R SV +++ G+ +A+ TI D+NIT L+A +VLF FG Sbjct: 523 LTVGMAVDANVLIFERIREELRT-SSVQSAINAGYEKAFVTIADANITTLLAALVLFSFG 581 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G ++GFAIT+ + I+ SMFTAI RA++ + K ++ + Sbjct: 582 TGPIKGFAITLSIGIITSMFTAILGTRAIVNALYGNKPVEKLS 624 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 103/275 (37%), Gaps = 5/275 (1%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 S ++ L + G V V+ +I N Sbjct: 349 SAQVTVTLDGAGGRKMLATTKENIGHRMAVVYIENRVETIEKNGEKVKKRITTKDVINAA 408 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + G Q + + + I VGP + ++ I +G++ Sbjct: 409 VIRGQFANRFQITGLDSPQEAQDLALLLRAGALAAPMEIVEERTVGPSLGQDNINQGMMS 468 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 VI+ + +L+ + R+K + A L L++ + +L L +A ++ +G Sbjct: 469 VIVGFLLVLVIMVWRYK-TLGMIANMALTLNLILIVAVLSLLQATLTLPGIAGIVLTVGM 527 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 +V+ V++++R+R+ ++ + S + I+ + ++ ++ L + +G Sbjct: 528 AVDANVLIFERIREELR----TSSVQSAINAGYEKAFVTIADANITTLLAALVLFSFGTG 583 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 I FAI ++ GI+ + ++I I+ +Y + Sbjct: 584 PIKGFAITLSIGIITSMFTAILGTRAIVNALYGNK 618 >gi|254427869|ref|ZP_05041576.1| protein-export membrane protein SecF [Alcanivorax sp. DG881] gi|196194038|gb|EDX88997.1| protein-export membrane protein SecF [Alcanivorax sp. DG881] Length = 302 Score = 217 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 153/291 (52%), Gaps = 3/291 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + I FM AR +S+ + S+ LL T GLN G+DF GG + V + V+LS VR++ Sbjct: 1 MNINFMAARKPLGVLSLALVVISVALLLTRGLNLGLDFTGGTTVVVKSPVDVELSEVRAD 60 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L GD Q++ K +R+ P D +V V + P Q E V Sbjct: 61 LADAGFGDAVVQHYGSPKEVNIRV--APRDGKDADQVGLNVVAVLKNHNPDLEKQKVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL + ++++ M++Y+W RF F + + L D+ LG F+L Sbjct: 119 GPQVGDELRDESGTAMLLALGLMMVYVWFRFSNKFGVATVVALFHDVIIVLGLFSLIQWP 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL LIGYS+ND +VV DR+R++ + + +I+ ++N+TL R++ TS Sbjct: 179 FDLTVLAAVLALIGYSLNDSIVVADRIREDFR-NSRQTDPVAIINGAVNQTLTRTINTSA 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + +GG V+ SF+ + G+ V SSI++ + IL + + Sbjct: 238 TTLLVLVALYFFGGEVMRSFSEALLVGVFVGTYSSIYVVSNILFMMKVSKE 288 >gi|325127703|gb|EGC50614.1| protein-export membrane protein SecD [Neisseria meningitidis N1568] Length = 617 Score = 217 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 164/506 (32%), Positives = 275/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ Q N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVCQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G+ RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K L+ +VE++G ++N A Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 38.5 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQFKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|149375021|ref|ZP_01892794.1| protein-export membrane protein SecF [Marinobacter algicola DG893] gi|149360910|gb|EDM49361.1| protein-export membrane protein SecF [Marinobacter algicola DG893] Length = 318 Score = 217 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 153/289 (52%), Gaps = 6/289 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I FM R +SI + +I LL GLN G+DF GG + + + L VR LE Sbjct: 9 IDFMGFRKIASVVSIALVVAAIALLAVRGLNLGLDFTGGTSVELEYQQAPALDNVRQTLE 68 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 S QNF + LVR+ D ++ V ++ + ++E VG Sbjct: 69 SAGYEQFVVQNFGSDTTVLVRMAESEND-----QLAAEVTAALSAGGNQLELVSSEFVGS 123 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ EL +G++I+ +LIY+ +RF++ F + ++ L D+ LG FALF F+ Sbjct: 124 QVGDELKEDSGLGMLIALAVVLIYVGMRFQFKFGIASVVPLAHDVIIVLGVFALFQWTFD 183 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L+ +AA+L +IGYS+ND +VV DR+R+N + S +I++SI++T+ R++ TS Sbjct: 184 LSVLAALLAVIGYSLNDTIVVADRIRENFRKMREGGS-EHIINESIHQTISRTINTSGTT 242 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + + + GG I +FA+ + G+VV SSI+++A +L+ + R Sbjct: 243 LVVLFALYFLGGEAINNFALALIIGVVVGTYSSIYVSANLLVALGVARE 291 >gi|15602091|ref|NP_245163.1| preprotein translocase subunit SecF [Pasteurella multocida subsp. multocida str. Pm70] gi|12720452|gb|AAK02310.1| SecF [Pasteurella multocida subsp. multocida str. Pm70] Length = 324 Score = 217 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 100/293 (34%), Positives = 162/293 (55%), Gaps = 4/293 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM R WG +SIL + S+ + T G N+G+DF GG + + ++P +L VR Sbjct: 20 PYRLIHFMAHRKWGYLLSILVIVASLFFIVTKGFNWGLDFTGGTVIDMSFSQPAELDKVR 79 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 LE I QN ++ ++RL D+ + E+ + T+ + E Sbjct: 80 LTLEQKGIQGAIVQNSGSVRDIIIRLPAAISDANIGNNIKELFAATV---DKNVTVHSIE 136 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + + +L+YI +RF+W ALGA+ +L D+ TLG F+L Sbjct: 137 FVGPNVGEELTQSAIYATLATLLMLLVYIGMRFEWRLALGAVASLAHDVLVTLGLFSLLQ 196 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE NLT VAA+LT++GYS+ND +VV+DR+R+N++ + D+I+ S+++TL R++ T Sbjct: 197 IEMNLTFVAAILTVVGYSLNDSIVVFDRVRENIRKIRRT-DVLDIINISLSQTLSRTLMT 255 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S I V+ + ++GG I SF++ + GI SSIF+A + + R Sbjct: 256 SATTIIVVVSLLLFGGPSIHSFSVALLIGIGFGTYSSIFVAIALAYDLGLKRE 308 >gi|197105416|ref|YP_002130793.1| protein-export membrane protein SecF [Phenylobacterium zucineum HLK1] gi|196478836|gb|ACG78364.1| protein-export membrane protein SecF [Phenylobacterium zucineum HLK1] Length = 320 Score = 217 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL------NYGIDFKGGIQ 580 +IP +F+R +S L I S+ N GIDF GG Sbjct: 1 MWPLIKIIPIKTNFRFVRFAKIAGILSALAVIASLARALMPFEPPCGGLNCGIDFTGGTV 60 Query: 581 LGV-LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + + A + VDL+ R+ + L++GD Q F +VR YQP + +V E V+ Sbjct: 61 IELSTAPQQVDLAAARAAINRLELGDPQVQGFGDGTAAMVR--YQPPAGASADQVAEQVR 118 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 +T+ + T ++VG K+S EL + G+ + ++ + MLIYIW RF+ F +GA+ Sbjct: 119 GALTQALGQVTFDAPDVVGAKVSGELFQSGLTALGLAILLMLIYIWFRFELQFGIGAVVG 178 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L D+ T G A F +EF+L VAA+LT+IGYS+ND VVV+DR+R+N++ Y + R+ Sbjct: 179 LFHDVILTFGLIAFFQLEFSLNTVAAILTVIGYSMNDTVVVFDRLRENLRKY-KRMPLRE 237 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +ID SINETL R++ T + A +++ +A++GG + +I + FGI++ SS+++AAP+ Sbjct: 238 VIDLSINETLSRTIITGVTAIMALTGLALFGGPTLFDMSIVLIFGIIIGTYSSVYVAAPV 297 Query: 820 LLFIYDWR 827 +L R Sbjct: 298 ILLWGVKR 305 >gi|189184070|ref|YP_001937855.1| preprotein translocase subunit SecD [Orientia tsutsugamushi str. Ikeda] gi|189180841|dbj|BAG40621.1| protein-export membrane protein SecD [Orientia tsutsugamushi str. Ikeda] Length = 520 Score = 217 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 183/530 (34%), Positives = 304/530 (57%), Gaps = 19/530 (3%) Query: 1 MRNNPW-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + + + +I I L +PNF + +P+ I+LGLDL+GGS+++L+ Sbjct: 1 MKQFLFNKIFITVLITAIALCFVVPNFFDTTKY----QWLPQKTINLGLDLKGGSYVLLQ 56 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 +D D +V L + LR L+ IG ++ + I L DS + + + + Sbjct: 57 LDFDTYVTEQLNIIVGNLRKELRNNKIGYKELKIQKQYIHLELRDSEARFKVENLLRNLE 116 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 + L+ + ++ I + + + ++ IE SMEIIR RID G +E+ Sbjct: 117 TSI-----------LIKFSQNNKLHISFTDHKLSELRESLIENSMEIIRMRIDSSGTTEA 165 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG---VRFLRDS 236 IQ+ G + I++++PG +DP L+ L+ AK++F+ V + + + Sbjct: 166 NIQKHGDNNIILEVPGIEDPKHLKNLVTKIAKLTFNIVDSGTVAQDQHISKDLMLVKEQN 225 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + L+ + G L K +PVV +F+ +G + F ++T++ G+ LA+ Sbjct: 226 NPENKLLVRRQPTIGGDLLTNANVSFNKYSQPVVSFTFNSLGTKLFADITKEYQGRRLAI 285 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 +LD ++L+APVI++ I G ISGNFTIE+A L+ +L++G+LP L+++EE+ +G L Sbjct: 286 ILDSKLLSAPVISEPILGGAGMISGNFTIESAKELSLLLKSGALPAALSVIEEKTIGPTL 345 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 GSDSI G A G +L+ +FM+ +YG GL A+ ++F ++I LA+LS+L ATLTLP Sbjct: 346 GSDSIQAGKLAGYIGFILVCIFMLCIYGILGLFANIALFFSLIYILAILSMLQATLTLPG 405 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGI+L IG+AVD+NIL+ ERIREE + S+ S+ GF +++TI DSNIT L+A ++ Sbjct: 406 IAGIILTIGMAVDANILIYERIREELQNGNSILYSVREGFKLSFATIIDSNITTLLAAIL 465 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 L+ FG GAV+GFAIT+ + IL SM++A I R ++ ++YK ++ Sbjct: 466 LYIFGTGAVKGFAITLAIGILSSMYSATIITRLLIDSWVKYKLPIKLNTT 515 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 76/176 (43%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I+ G + I I + I++ + L A L + L ++ Sbjct: 340 TIGPTLGSDSIQAGKLAGYIGFILVCIFMLCIYGIL-GLFANIALFFSLIYILAILSMLQ 398 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ +++Y+R+R+ ++ S + + + + + Sbjct: 399 ATLTLPGIAGIILTIGMAVDANILIYERIREELQ---NGNSILYSVREGFKLSFATIIDS 455 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + ++G + FAI +A GI+ + S+ I ++ ++ Sbjct: 456 NITTLLAAILLYIFGTGAVKGFAITLAIGILSSMYSATIITRLLIDSWVKYKLPIK 511 >gi|121611003|ref|YP_998810.1| preprotein translocase subunit SecD [Verminephrobacter eiseniae EF01-2] gi|121555643|gb|ABM59792.1| protein-export membrane protein SecD [Verminephrobacter eiseniae EF01-2] Length = 636 Score = 217 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 173/516 (33%), Positives = 277/516 (53%), Gaps = 15/516 (2%) Query: 18 GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL 77 I N + +S + A+ N + LGLDLRGG H +L+VD + + Y+ ++ Sbjct: 102 ASYIVALNLVSRSPT--WLKALHANPMYLGLDLRGGVHFMLQVDMQAALTKKAESYAGDI 159 Query: 78 RSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVT 137 R L+ +GI + + I + D + + + +L+ P+ Sbjct: 160 RGLLRDQGIRHGGVSREGQNIDIRVRDEATLTAARNAIAR--SLTDLQLSSRPEDGADSA 217 Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 + + V A++Q++ + RI+++G++E IQ+ G RI++QLPG Q Sbjct: 218 GGGFRLRAFIKPEATRLVQEQALKQNIVTLHNRINELGVAEPVIQQQGQDRIVVQLPGVQ 277 Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKK-------GFMFGVRFLRDSDGNQYLVEDKVEIS 250 D ++ + +LG TA + V + + G + +G +V+ +V ++ Sbjct: 278 DTAKAKDILGRTATLEVRMVDESTEARSAASGRVPLPLGSERYPERNGQPVIVKKQVVLT 337 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAP 306 G +L A FD +T +P V+++ D GAR F +VTR+N+GK + G V+TAP Sbjct: 338 GENLTDAQPGFDGQTQEPTVNLTLDAKGARIFRDVTRENVGKRMAIVLFEKGQGEVVTAP 397 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 VI I G+ QISG+ + + A A +LRAGSL + I+EE +G LG+D+I +G Sbjct: 398 VIRSEIGGGRVQISGSMSTDEAHDTALLLRAGSLAAPMEIIEEFTIGPTLGADNIERGIH 457 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 ++V GL I LFM Y +GL + ++ +NV+L +A+LS+L ATLTLP IA + L IG+ Sbjct: 458 SVVWGLAAIALFMCCYYQLFGLFSSIALAVNVLLLVAVLSMLQATLTLPGIAAMALAIGV 517 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R S ++ G+ RA++TI DSN+T LIA + L FG G VR Sbjct: 518 AIDSNVLINERIREELRSGISAQAAIHTGYERAWATIVDSNVTTLIAGLALLTFGSGPVR 577 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 GFA+ + IL SM +A+ RA++ +K Sbjct: 578 GFAVVHCIGILTSMLSAVLFSRALVNLWYGRQKKLK 613 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 86/212 (40%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I +GI V+ A+ Sbjct: 408 VQISGSMSTDEAHDTALLLRAGSLAAPMEIIEEFTIGPTLGADNIERGIHSVVWGLAAIA 467 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ ++ F L + L +++ + ++ L +AA+ IG +++ V++ Sbjct: 468 LFMCCYYQL-FGLFSSIALAVNVLLLVAVLSMLQATLTLPGIAAMALAIGVAIDSNVLIN 526 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + IS + I V +++ I+ L + +G + FA+ Sbjct: 527 ERIREELR---SGISAQAAIHTGYERAWATIVDSNVTTLIAGLALLTFGSGPVRGFAVVH 583 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++ + ++ Y + K + Sbjct: 584 CIGILTSMLSAVLFSRALVNLWYGRQKKLKSL 615 >gi|237744284|ref|ZP_04574765.1| translocase subunit secF [Fusobacterium sp. 7_1] gi|229431513|gb|EEO41725.1| translocase subunit secF [Fusobacterium sp. 7_1] Length = 316 Score = 217 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 84/295 (28%), Positives = 148/295 (50%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + ++ + ISI+ SI + FT GLNYGIDF GG + + Sbjct: 1 MKTHLHIIKNIKIYLSISIILVTLSIIIFFTKGLNYGIDFSGGNLFQLKYSGTAVTLNQI 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + ++ N + K + + + + + T+ + Sbjct: 61 NENLDELAKELPQVNSNSRKVQISDDGTVIVRVPEISENDKKKVLNSLQQLGSYTLDKED 120 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VG I +L + I + I AI +++YI +RF++ FA+G I +L+ DI +GF AL G Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVVYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 E + +AA+LT++GYS+ND +V+YDR+R+N+K + +D+S+N+T RS+ T Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEQCMDESVNQTAIRSLNT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 S+ SV+ + ++GG+ + +F + + GI+ SSIF+A PI+ + + N Sbjct: 241 SVTTLFSVIAILIFGGASLKTFIMTLLIGILAGTYSSIFVATPIVYLLNKRKGNN 295 >gi|307543989|ref|YP_003896468.1| preprotein translocase subunit SecD [Halomonas elongata DSM 2581] gi|307216013|emb|CBV41283.1| preprotein translocase subunit SecD [Halomonas elongata DSM 2581] Length = 616 Score = 217 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 158/522 (30%), Positives = 278/522 (53%), Gaps = 36/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 + + P+ + + ++LGLDLRGG H +LEVD + + L+ + +R+ L+ E + Sbjct: 105 NQAESTPAWLESLAASPMTLGLDLRGGVHFLLEVDMEAAITQRLESDASAMRNLLRDERL 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + I++ F ++ ++ + + D + + T + + Sbjct: 165 RYRNTELGERSISMDFMNAEDRDQARQLI--------APEYPDFDYSNVEKTRGAGLEMT 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+ ++++ +A+ Q++ +R R++++G+SE +QR G +RI+++LPG QD + ++++ Sbjct: 217 LTDTAVNEIQDYAVNQNLTTLRNRVNELGVSEPLVQRQGPNRIVVELPGVQDTAAAKRII 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F RD++ + V I+G ++ A +FD Sbjct: 277 GATANLEFRLEA-RPDTPESETETFPFRDNEARTATLMRDVIITGDRVSNANRSFDENG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+IS D G TR NIG+ +AV+ + Sbjct: 335 RPQVNISLDGTGGTLMNRATRTNIGRNMAVLFIEHNSRERTVMKDGEPTTVRTQDTERGI 394 Query: 309 -----NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LR+GSL + +ER +G LG+ ++ + Sbjct: 395 ISLATIQSALGNSFRITGLESPTEAADLALLLRSGSLAAPMYFAQERTIGPSLGAKNVER 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G ++ GL+L+VLFM+V Y +G+ A+ ++ N+ L +A++S+LGATLTLP IAGIVL Sbjct: 455 GILSVQVGLLLVVLFMLVRYRVFGVFANLALGFNLTLLVAVMSMLGATLTLPGIAGIVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ ERIREE R SV ++ G+ RA+S+I D+NIT L+ ++LF G G Sbjct: 515 LGMAVDANVLIFERIREELRNGLSVQQAIHAGYERAFSSIVDANITTLLVALILFSIGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFA+T+ L IL S+FTA+ + RAM+ K +K + I Sbjct: 575 PVKGFAVTLSLGILTSLFTALMVTRAMVNLCYGGKPVKKLWI 616 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 31/251 (12%), Positives = 96/251 (38%), Gaps = 4/251 (1%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + + + Q + + ++ L G + Sbjct: 367 IEHNSRERTVMKDGEPTTVRTQDTERGIISLATIQSALGNSFRITGLESPTEAADLALLL 426 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + +GP + + + +GI+ V + + +++++ +R++ F + A L Sbjct: 427 RSGSLAAPMYFAQERTIGPSLGAKNVERGILSVQVGLLLVVLFMLVRYRV-FGVFANLAL 485 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 ++T + ++ G L +A ++ +G +V+ V++++R+R+ ++ +S + Sbjct: 486 GFNLTLLVAVMSMLGATLTLPGIAGIVLTLGMAVDANVLIFERIREELR---NGLSVQQA 542 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 I V ++ + L + G + FA+ ++ GI+ + +++ + ++ Sbjct: 543 IHAGYERAFSSIVDANITTLLVALILFSIGTGPVKGFAVTLSLGILTSLFTALMVTRAMV 602 Query: 821 LFIYDWRAKNA 831 Y + Sbjct: 603 NLCYGGKPVKK 613 >gi|294783328|ref|ZP_06748652.1| protein-export membrane protein SecF [Fusobacterium sp. 1_1_41FAA] gi|294480206|gb|EFG27983.1| protein-export membrane protein SecF [Fusobacterium sp. 1_1_41FAA] Length = 318 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 88/297 (29%), Positives = 159/297 (53%), Gaps = 3/297 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSVV 594 + + +R + + +SI+ I SI + F GLNYGIDF GG + ++ + L+ + Sbjct: 1 MKVNLHIIRNIKYYLSVSIVLVILSIVVFFAKGLNYGIDFTGGNLFQLKYNDKKITLTEI 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 NL+ L + + + + + + E+ + Sbjct: 61 NENLDKLSEKLPQVNSNSRKVQISEDGTVILRVPELKEEDKKEILNSLQELGAFNL-DKE 119 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 + VG I +L + I + I AI +++YI +RF++ FA+G I +L+ DI +GF AL Sbjct: 120 DKVGASIGDDLKKSAIYSLGIGAILIVLYITLRFEFSFAIGGILSLLHDIIIAIGFIALM 179 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSV 773 G E + +AA+LT++GYS+ND +V+YDR+R+N+ + +T + + D +D+S+N+T RS+ Sbjct: 180 GYEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRRHTKNWTLEDCMDESVNQTAIRSL 239 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 TS+ SV+ + ++GG+ + +F + + GI+ SSIFIA PI+ + + N Sbjct: 240 NTSITTLFSVIALLIFGGASLKTFIMTLLIGILAGTYSSIFIATPIVYILNKRKGNN 296 >gi|117919885|ref|YP_869077.1| preprotein translocase subunit SecD [Shewanella sp. ANA-3] gi|117612217|gb|ABK47671.1| protein-export membrane protein SecD [Shewanella sp. ANA-3] Length = 616 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 161/522 (30%), Positives = 279/522 (53%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + RS L++E I Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D+ + + D + + + + V Sbjct: 164 RYAGIRNNAQGIEIKFRDAESLASAERFLKSRSN--------DMVFSDVSKGEDFALQAV 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ + Q+ A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 MSETYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + +G Q +++ +V ++G H+ GA +F Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRVPAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 D + +P V I+ D G F VT+DNIGKP+A + + + Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394 Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 A LA +LRAG+L ++IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+ ++++FM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 VQAMIWGMAVVLIFMLVYYRSFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 A++GFA+T+ + I SMFTAI RA++ I K++K++ I Sbjct: 575 AIKGFAVTLMIGIATSMFTAIVGTRAIVNAIWGGKRVKTLSI 616 Score = 148 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 93/241 (38%), Gaps = 6/241 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S R+ S+++ I + + + + ++ + Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I +GP + E I G+ +I +LI++ + ++ F L A L ++ +G Sbjct: 436 IVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYR-SFGLIANLALTANLVMVVGV 494 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828 ++ F++ L + G I FA+ + GI + ++I I+ R Sbjct: 552 STIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRAIVNAIWGGKRV 611 Query: 829 K 829 K Sbjct: 612 K 612 >gi|91774867|ref|YP_544623.1| protein-export membrane protein SecD [Methylobacillus flagellatus KT] gi|91708854|gb|ABE48782.1| protein-export membrane protein SecD [Methylobacillus flagellatus KT] Length = 609 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 173/509 (33%), Positives = 277/509 (54%), Gaps = 24/509 (4%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L R P + + LGLDLRGG H +L+VD ++ + Y + RS L+ I Sbjct: 104 NLLSRSPEWLRSIGARPMYLGLDLRGGVHFLLQVDMKSALDQAAERYVGDFRSVLRTARI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + + + F D+ + D + ++ V Sbjct: 164 NYLGVSRDGQAVNIRFKDTAELSKAQRVLEKEY--------PDLTFRTSNRGEDSILTAV 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ ++ AI+Q+++ + RI+++G++E IQ+ G R+++QLPG QD ++ +++L Sbjct: 216 LSEPAKKRIQEFAIKQNIQTLHNRINELGVAEPVIQQQGIDRVVVQLPGVQDTAKAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKK---------GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257 G TA + V + S FG F D +G LV+ V ++G ++ A Sbjct: 276 GRTATLEIRMVDEDRSNAVTLENASKGQVPFGTEFYIDRNGIPMLVKKNVVLTGDYITDA 335 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIP 313 DP+ VV ++ D GAR F +VTR+N+GK + V+TAPVI + I Sbjct: 336 GPGMDPQGGGAVVHVTLDARGARIFKQVTRENVGKRMAILLIEKGQAEVITAPVIREEIG 395 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 G+ QISG + A +A +LRAG+L + I+EER VG +G +I +G + + G V Sbjct: 396 GGRVQISGMANTQEATDVALLLRAGALAAPMEIIEERTVGPSMGEANIERGMHSTLWGFV 455 Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433 I +FMI Y +G V+ ++ +N+IL +ALLS+L ATLTLP IA + L +G+A+D+N+L Sbjct: 456 AISIFMIAYYMLFGTVSVLALSINLILLVALLSMLQATLTLPGIAAVALTLGMAIDANVL 515 Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493 +NERIREE R + S+ G+ RA+ TI D+N+T +IA + LF FG G V+GFA+ Sbjct: 516 INERIREEMRNGNTPQASIHAGYERAFGTILDANVTTMIAGLALFMFGTGPVKGFAVVHV 575 Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKS 522 L IL SMF+A+ + RA++ I Y++ S Sbjct: 576 LGILTSMFSAVLVSRAVINLIYGYRRKIS 604 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 88/205 (42%), Gaps = 4/205 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 Q + + + I VGP + I +G+ + +A+ I++ + Sbjct: 406 NTQEATDVALLLRAGALAAPMEIIEERTVGPSMGEANIERGMHSTLWGFVAISIFMIAYY 465 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 F ++ L +++ + ++ L +AAV +G +++ V++ +R+R+ M Sbjct: 466 -MLFGTVSVLALSINLILLVALLSMLQATLTLPGIAAVALTLGMAIDANVLINERIREEM 524 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + + I G + ++ I+ L + ++G + FA+ GI+ + Sbjct: 525 R---NGNTPQASIHAGYERAFGTILDANVTTMIAGLALFMFGTGPVKGFAVVHVLGILTS 581 Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833 S++ ++ ++ IY +R K +++ Sbjct: 582 MFSAVLVSRAVINLIYGYRRKISKL 606 >gi|320197155|gb|EFW71772.1| Protein-export membrane protein SecF [Escherichia coli WV_060327] Length = 323 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 165/301 (54%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W GIS L I +I ++ G N+G+DF GG + ++ + Sbjct: 5 YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEIMLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P ++ V+R L+ + QNF + +VR+ G++ Q +++K Sbjct: 65 PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ + +++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|296115190|ref|ZP_06833831.1| bifunctional preprotein translocase subunit SecD/SecF [Gluconacetobacter hansenii ATCC 23769] gi|295978291|gb|EFG85028.1| bifunctional preprotein translocase subunit SecD/SecF [Gluconacetobacter hansenii ATCC 23769] Length = 317 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 124/303 (40%), Positives = 183/303 (60%), Gaps = 4/303 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 +P I FMR RF G+ S + S+ S+ L F GL G+DF+GGI + P D+ Sbjct: 9 RFVPRGTKIDFMRGRFIGLATSAVLSVASLILFFHPGLTLGLDFRGGIVVEAHTQGPADV 68 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE---IVPL 648 S +R+ L + + Q+F G + L+RL P A + + + +P Sbjct: 69 SAIRAALATQHVTAAGVQSFGGPDDVLIRLDTPPQSDPAHEAETQGMVDAVRHAIGTIPG 128 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + + + VG +S EL R G++ + IS + +L YIW RF+W FA+ A+ TL+LD+TK + Sbjct: 129 AQVLRADAVGASVSAELFRNGMLALGISLLMILAYIWFRFEWEFAVSAVVTLVLDLTKAV 188 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 GF L EF+L VAA+LT++GYS NDKVVVYDR+R+N++ Y S+ +LI+ SINET Sbjct: 189 GFLVLTHFEFDLVMVAAILTILGYSTNDKVVVYDRIRENLRKY-RSMPLAELINLSINET 247 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TS F++ LP+A++GG+ + FA M FGIVV SSSIFIAAP+LL + + R Sbjct: 248 LSRTLGTSSTVFLAALPLALFGGASLSGFAWVMLFGIVVGTSSSIFIAAPLLLLLGEKRL 307 Query: 829 KNA 831 + Sbjct: 308 RRN 310 >gi|262274805|ref|ZP_06052616.1| protein-export membrane protein SecD [Grimontia hollisae CIP 101886] gi|262221368|gb|EEY72682.1| protein-export membrane protein SecD [Grimontia hollisae CIP 101886] Length = 606 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 159/526 (30%), Positives = 282/526 (53%), Gaps = 43/526 (8%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + N + LGLDLRGG H ++EVD D + L D R+ L++ I Sbjct: 94 NLAPATPDWLEAIGANPMKLGLDLRGGVHFLMEVDMDAAMEKLLTQQEDTFRTELREAKI 153 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +R + I + + E ++ ++L+ D + TT ++ Sbjct: 154 RYRGIRVGGDDNIEVMLRNDADMEKAESEL--------ARLHPDM----VFTTDSARFAV 201 Query: 146 V--LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203 ++ ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R + Sbjct: 202 SGKFTEERFQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAK 261 Query: 204 QLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258 ++LG TA + F +V + G DG +++ +V + G + A+ Sbjct: 262 EILGATATLEFREVDDSADLAAAAAGRVPPGSEIKYTRDGRPVVLKKRVILGGSSITDAS 321 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV---------------- 302 ++FD + +P V+IS D G + +++N+GK +A V Sbjct: 322 SSFDEYS-RPQVNISLDSDGGSKMAAFSKNNVGKLMATVFAEYKDSGKRDENGKVILSKH 380 Query: 303 --LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + Q +I+G + A LA +LRAG+L ++IVEER +G +G + Sbjct: 381 EEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQN 440 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAG 419 I G A + GL+ ++LF +V Y ++GL A+ ++ N++L + ++S++ AT+TLP IAG Sbjct: 441 IDMGIKACIWGLLAVMLFTLVYYRRFGLFANCALAANIVLIIGVMSMIPGATMTLPGIAG 500 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ ERIREE + ++ ++ G++ A+STI D+NIT LI ++LF Sbjct: 501 IVLTVGMAVDANVLIFERIREELNEGRNPQQAIHQGYANAFSTIADANITTLITAIILFA 560 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G GAV+GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 561 VGTGAVKGFAVTLSIGILTSMFTAIIGTRCLVNLVYGGKRINKLSI 606 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 95/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D N + + N + L R G + + Sbjct: 360 FAEYKDSGKRDENGKVILSKHEEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGA 419 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F L A L +I Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIKACIWGLLAVMLFTLVYYR-RFGLFANCALAANI 478 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ + + + I + Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELNE---GRNPQQAIHQ 535 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G + FA+ ++ GI+ + ++I ++ + Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAVKGFAVTLSIGILTSMFTAIIGTRCLVNLV 595 Query: 824 YDWRAKNA 831 Y + N Sbjct: 596 YGGKRINK 603 Score = 38.9 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 76/252 (30%), Gaps = 40/252 (15%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69 + ++ +G L ALPN + + A G+ + L Sbjct: 1 MVVLVLFVGALYALPNIYGEDPAVQITGAR-------------GASVDL----------- 36 Query: 70 LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG-----VNS 124 D ++S L+K+ I S+ + + F+D+ + D + L+ + Sbjct: 37 --STLDTVKSSLEKDNIPYQSIALENGTVLVRFSDTDNQIEARDALNDKLKDNDLVVALN 94 Query: 125 KLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 P + ++ + L + ++D + + Q + R + + I Sbjct: 95 LAPATPDWLEAIGANPMKLGLDLRGGVHFLMEVDMDAAMEKLLTQQEDTFRTELREAKIR 154 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I+ G I + L + D + L F R + Sbjct: 155 YRGIRVGGDDNIEVMLRNDADMEKAESELARLHPDMVFTTDSARFAVSGKFTEE--RFQE 212 Query: 238 GNQYLVEDKVEI 249 Y VE + I Sbjct: 213 IRNYAVEQNITI 224 >gi|183601035|ref|ZP_02962528.1| hypothetical protein PROSTU_04656 [Providencia stuartii ATCC 25827] gi|188019373|gb|EDU57413.1| hypothetical protein PROSTU_04656 [Providencia stuartii ATCC 25827] Length = 604 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 161/524 (30%), Positives = 275/524 (52%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D ++ + D +R+ L++ + Sbjct: 93 NLAPATPKWLEAVGGEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNMDGIRNDLRQAKV 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+R+ N + + F ++ + + Q + ++ Sbjct: 153 PYSSIRKGDNYSVEIRFRNADDRSQAEKILLRKFQ-----------DLVFSNGNNNTMTA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + ++A+ Q++ IIR R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMTDERLREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGAERIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + G D +G Y++ +V ++G H+ +T+ Sbjct: 262 LGATATLEFRLVNQSVDPAAAENGRVPGDSEVKYDRNGFPYVLYKRVVLTGDHITDSTS- 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------------V 302 + P V I D G + TRDN GK +A + Sbjct: 321 GSDENGAPQVSIGLDSAGGSVMSDFTRDNQGKQMATLFVEYKDSGKKDAEGRVILMKDEK 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + A + +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINAANISARFGSQFRITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIE 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL +LFMI+ Y K+GL+A ++F N+I+ + ++SLL ATLT+P IAGIV Sbjct: 441 QGLKACLAGLFASILFMIIYYRKFGLIASTALFANLIMIVGVMSLLPGATLTMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE R +SV S+ G+ A+S+I D+N+T LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 561 TGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYGGKRINKLSI 604 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + A ++++ I ++ F L A T L ++ +G +L Sbjct: 429 TIGPTLGLQNIEQGLKACLAGLFASILFMIIYYR-KFGLIASTALFANLIMIVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ ++ S + I + + Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQSIHEGYKGAFSSIID 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+ + ++I I+ +Y + N Sbjct: 545 ANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYGGKRINK 601 >gi|33152766|ref|NP_874119.1| preprotein translocase subunit SecF [Haemophilus ducreyi 35000HP] gi|33148990|gb|AAP96508.1| protein-export membrane protein SecF [Haemophilus ducreyi 35000HP] Length = 324 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 158/293 (53%), Gaps = 4/293 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM+ R++G S + + I + T G N+G+DF GG + ++P +L+ +R Sbjct: 16 PYKLIPFMKYRYFGFLFSFIVTGLCIFSIVTKGFNWGLDFTGGTVIETTFSQPANLAEIR 75 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + L+ Q +K ++RL GD +++++V + + + I++ E Sbjct: 76 TLLKQNGYESALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHRDL---DANAIIKSVE 132 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + +L+Y+ RF+ A+G I L D+ T+G F+ Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTVGLFSFLQ 192 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N S ++ID S+++TL R++ T Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKIRRVTSI-EIIDISLSQTLSRTLMT 251 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S+ VL + ++GG I SF++ + GI SSI++A + L + R Sbjct: 252 SITTLFVVLALFLFGGPTIHSFSLALLIGIGFGTYSSIYVAIGVALQLGLDRE 304 >gi|34763056|ref|ZP_00144030.1| PROTEIN TRANSLOCASE SUBUNIT SECF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741674|ref|ZP_04572155.1| protein translocase subunit secf [Fusobacterium sp. 4_1_13] gi|256844998|ref|ZP_05550456.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_36A2] gi|294785715|ref|ZP_06751003.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_27] gi|27887282|gb|EAA24379.1| PROTEIN TRANSLOCASE SUBUNIT SECF [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429322|gb|EEO39534.1| protein translocase subunit secf [Fusobacterium sp. 4_1_13] gi|256718557|gb|EEU32112.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_36A2] gi|294487429|gb|EFG34791.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_27] Length = 316 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 87/295 (29%), Positives = 147/295 (49%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + ++ + ISI+ SI + FT GLNYGIDF GG + Sbjct: 1 MKTNLHVIKNIKIYLSISIILVTLSIVIFFTKGLNYGIDFSGGNLFQLKYTSTSVTLNQI 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + ++ N + K + + + + + T+ + Sbjct: 61 NENLDKLAKELPQVNSNSRKVQISDDGTVIVRVPEISENDKRKVLNNLKELGSYTLDKED 120 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VG I +L + I + I AI ++IYI +RF++ FA+G I +L+ DI +GF AL G Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVIYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 E + +AA+LT++GYS+ND +V+YDR+R+N+K + + +D SIN+T RS+ T Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEECMDNSINQTAIRSLNT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 S+ SV+ + V+GG+ + +F + + GI+ SSIF+A PI+ + + N Sbjct: 241 SVTTLFSVIAILVFGGASLKTFIMTLLIGILAGTYSSIFVATPIVYLLNKKKGNN 295 >gi|326794834|ref|YP_004312654.1| protein-export membrane protein SecD [Marinomonas mediterranea MMB-1] gi|326545598|gb|ADZ90818.1| protein-export membrane protein SecD [Marinomonas mediterranea MMB-1] Length = 617 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 158/523 (30%), Positives = 275/523 (52%), Gaps = 37/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ P + LGLDLRGG H +LEVD + L++ E+++ L+KE I Sbjct: 105 NLVPTTPDWLASLGAGPAKLGLDLRGGVHFLLEVDTPAALKQRLEVAGSEMKAALRKERI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ +++ F ++ + + + ++I Sbjct: 165 RYRSVEIKDGVMSIRFLKDSDRDLAESLLKDDFGDYLYR--------TVEDGKSFFLTIG 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 S+ ++ ++A+EQ++ +R R++++G++E +QR GS+RI+++LPG QD + ++++ Sbjct: 217 FSEAEQKEIEAYALEQNLTTLRNRVNELGVAEPLVQRQGSNRIVVELPGVQDTAAAKRII 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F R+ G +E + I+G ++ A ++FD Sbjct: 277 GATANLEFRLEA-GLDANASDTETLTFRNGSGRTAQLEKDIIITGDSVSDANSSFDENG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+IS D G ++ +VTR +G+ +AVV + + Sbjct: 335 RPQVNISLDSKGGKQMAKVTRSAVGRNMAVVFIEHKSRSRFVEQEDGSLKEVRRSYSEKG 394 Query: 309 ------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q +I+G + + LA +LRAG+L + VEER +G LG+++I Sbjct: 395 IISLATIQTTLGNSFRITGLDSPRESSELALLLRAGALAAPIYFVEERTIGPSLGAENIK 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 G + G+++++LFM++ Y +G+ A+ S+ LN++L +A +SL+ ATLTLP IAGIVL Sbjct: 455 LGVTSAQIGMLVVMLFMLIYYKVFGVFANVSLILNIVLLMAFMSLMSATLTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ RI+EE ++ GF+RA++TIFD+NIT L+ V+LF G Sbjct: 515 TMGMAVDANVLIFSRIKEELANGLPSQQAIHSGFNRAFTTIFDANITTLLVAVILFAVGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ L IL SMFTAI + RA + + +K K + I Sbjct: 575 GPVKGFAVTLSLGILTSMFTAIVVTRAQVNLVYGGRKNKRLYI 617 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 87/206 (42%), Gaps = 5/206 (2%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + + +GP + E I+ G+ I + +++++ I Sbjct: 415 DSPRESSELALLLRAGALAAPIYFVEERTIGPSLGAENIKLGVTSAQIGMLVVMLFMLIY 474 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +K F + A +LIL+I + F +L L +A ++ +G +V+ V+++ R+++ Sbjct: 475 YKV-FGVFANVSLILNIVLLMAFMSLMSATLTLPGIAGIVLTMGMAVDANVLIFSRIKEE 533 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + + + I N ++ + + + G + FA+ ++ GI+ Sbjct: 534 LA---NGLPSQQAIHSGFNRAFTTIFDANITTLLVAVILFAVGTGPVKGFAVTLSLGILT 590 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + ++I + + +Y R KN R+ Sbjct: 591 SMFTAIVVTRAQVNLVYGGR-KNKRL 615 Score = 52.0 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 33/223 (14%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + G++ ALPN P L++ Sbjct: 4 KYPLWKYLLILAVLVFGVVYALPNLYPDDPA-------------------------LQIS 38 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ- 120 + + R+ L K GI + + TL F + + + L Sbjct: 39 TQKATSTVDERTLKTARNALDKAGIELKAAELTSAGGTLRFDNGEDQLAAKPVIAAALGD 98 Query: 121 ---GVNSKLNVDPKKNLLVTTTEKEISIVL---SQNNIDQVISHAIEQSMEIIRQRIDQI 174 + + P + ++ + L ++ A++Q +E+ + Sbjct: 99 GYVTALNLVPTTPDWLASLGAGPAKLGLDLRGGVHFLLEVDTPAALKQRLEVAGSEMKAA 158 Query: 175 GISESTIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216 E R ++ + +D R + Sbjct: 159 LRKERIRYRSVEIKDGVMSIRFLKDSDRDLAESLLKDDFGDYL 201 >gi|255067979|ref|ZP_05319834.1| protein-export membrane protein SecD [Neisseria sicca ATCC 29256] gi|255047756|gb|EET43220.1| protein-export membrane protein SecD [Neisseria sicca ATCC 29256] Length = 617 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 169/506 (33%), Positives = 277/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R +++E I Sbjct: 104 NLLADSPEWMAKIGANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRREMRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQI+N + + D+ + K+ N + I++ Sbjct: 164 RTGTIRQIENGLIVPMQDAADVQKAMPKLRQLFPEAN------------LNADGNNITLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ I++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAINKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRD--------SDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + K L+ +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPVKVREALEGNVPSGFELLSSGGDHPETLLINKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRSAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G Sbjct: 391 GRVEISGSMTQAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFTA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + LFM+V Y G + ++ N++ + +LS + ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VALFMVVYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R+ ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELREGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 83/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + A+ Sbjct: 393 VEISGSMTQAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFTAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 LFMVVYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRE---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 38.9 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + ++ +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIACSILVAVVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK+ GI M N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALKQAGIQTDGMFVANNSLKVRFKDTETQLKARDVIENTL 95 >gi|119468100|ref|ZP_01611226.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Alteromonadales bacterium TW-7] gi|119448093|gb|EAW29357.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Alteromonadales bacterium TW-7] Length = 619 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 160/523 (30%), Positives = 264/523 (50%), Gaps = 38/523 (7%) Query: 32 LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 P + N + LGLDL GG H +E+D V+ L+ + RS L++E + Sbjct: 106 APAQPLWLKSLGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEQDFRSDLREEKLRY 165 Query: 89 FSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+R+ +++ + + K + + ++ + Sbjct: 166 RSVRRVAGSDRMRVEMRNEEDKNAAERFLESRYPL---------NVYIDDSSNDNAFFAT 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ + ++ +AI+Q+ IIR RI+QIG++E +QR G+ RI++QLPG QD +R +++L Sbjct: 217 MSEQKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPGVQDTARAKEIL 276 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V N G + DG +++ ++ + G H+ GA + Sbjct: 277 GATATLEFREVDENADPSAAAQGRIPAGTEMIMSRDGYPVVLKKRIILEGSHITGAQSGA 336 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 D V + G++ R + V ++ + + Sbjct: 337 DEYQRPQVSISLDSKGGSKMNAFTKRAIGKRMATVFIEYKPSGKKDENGKALPPIKVEEV 396 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 QA +I+G A L+ +LRAG+L + IVEER VG LG ++I Sbjct: 397 INVATIQARLDRSFRITGIDNPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIEA 456 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A+ G ++ FM++ Y +GLVA+ ++ N++L + ++SL+ ATLTLP IAGIVL Sbjct: 457 GMTAVALGFAFVLAFMLIYYKGFGLVANLALAANLVLIVGIMSLIPGATLTLPGIAGIVL 516 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE +S ++ G+ A+STIFD+NIT LIA V+LF G Sbjct: 517 TVGMAVDANVLIFERIREELADGRSPQQAVHFGYDSAFSTIFDANITTLIAAVILFAVGT 576 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G + GFA+T+ + IL SMFTAI RA++ I K++ + I Sbjct: 577 GPIAGFAVTLAIGILTSMFTAIVGTRAVINLFIGGKRIDKLSI 619 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 76/175 (43%), Gaps = 5/175 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716 GP + +E I G+ V + +L ++ I +K F L A L ++ +G +L G Sbjct: 446 GPSLGQENIEAGMTAVALGFAFVLAFMLIYYK-GFGLVANLALAANLVLIVGIMSLIPGA 504 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 L +A ++ +G +V+ V++++R+R+ + S + + + + Sbjct: 505 TLTLPGIAGIVLTVGMAVDANVLIFERIREELAD---GRSPQQAVHFGYDSAFSTIFDAN 561 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + I+ + + G I FA+ +A GI+ + ++I ++ + + Sbjct: 562 ITTLIAAVILFAVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVINLFIGGKRIDK 616 Score = 52.4 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 90/288 (31%), Gaps = 38/288 (13%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + IGLL A PN + ++V Sbjct: 4 KFPVWKYLLVLAVVAIGLLYASPNLYGRDPA-------------------------IQVS 38 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 + L D++ + LKK + V S + +I + F + + D + L Sbjct: 39 GAKGADVDL-SVVDKVNATLKKHNVAVKSTKLEGGQILVRFKNVEEQLKAQDLLRDSLSD 97 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI----------DQVISHAIEQSMEIIR-Q 169 S +N+ P + L + + + + + + +EQ + R Sbjct: 98 DYISAINMAPAQPLWLKSLGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEQDFRSD 157 Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 ++ S + GS R+ +++ E+D + + L + ++ + +N F Sbjct: 158 LREEKLRYRSVRRVAGSDRMRVEMRNEEDKNAAERFLESRYPLNVYIDDSSNDNAFFATM 217 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 + + +++ I A + + I Sbjct: 218 SEQKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPG 265 >gi|237736822|ref|ZP_04567303.1| translocase subunit secD [Fusobacterium mortiferum ATCC 9817] gi|229420684|gb|EEO35731.1| translocase subunit secD [Fusobacterium mortiferum ATCC 9817] Length = 316 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 85/290 (29%), Positives = 155/290 (53%), Gaps = 2/290 (0%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I ++ +G+S++ + S+ ++ T GLNYGIDF GG + + V L+ + S L+ Sbjct: 3 IGIVKNTKKFLGLSVVLVVLSLAVILTRGLNYGIDFSGGSLTQIKFEKVVSLAEINSVLD 62 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 ++ + + + + + + I E VG Sbjct: 63 NVAKNIPQLSGNSRKVQVSEGNTVIIRTQELTEAQKDALLESLNTVG-KYDIDKVEKVGA 121 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 I +EL + ++I A+ ++ YI +RF++ F+LGAI LI D+ +G +L G E + Sbjct: 122 SIGKELKTSAVYSLLIGAVLIVAYITVRFEFIFSLGAIIALIHDLIIAIGVISLLGYEVD 181 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMA 778 +AAVLT++GYS+ND +VV+DR+R+N+K T ++F +L+DKSIN+ + RS+ TS+ Sbjct: 182 TPFIAAVLTILGYSINDTIVVFDRIRENIKRKTKQKLTFEELLDKSINQVMIRSINTSVT 241 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +++ + ++GG + +F + + GI+ SS+FIA PI+ + + Sbjct: 242 TLFAIIAILIFGGDSLRTFIVTLLVGILAGTYSSVFIATPIVYLLDKKKR 291 >gi|293607156|ref|ZP_06689498.1| protein-export membrane protein SecD [Achromobacter piechaudii ATCC 43553] gi|292814490|gb|EFF73629.1| protein-export membrane protein SecD [Achromobacter piechaudii ATCC 43553] Length = 626 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 181/518 (34%), Positives = 281/518 (54%), Gaps = 24/518 (4%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74 + LL A P ++ + LGLDLRGG H +L+VD + + Sbjct: 110 VALNLLPASPAWMRAM------GWFAPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLA 163 Query: 75 DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134 ++RS L+ + + V + + + +FA++ ++ + L + + K L Sbjct: 164 ADVRSVLRDQKVNVTGVERSGMGVAATFANNDDRDRAIATLRTRLPDLEFTEREEAGKPL 223 Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194 L+ + +V A++Q++ + RI+++G++E IQ+ G+ RI++QLP Sbjct: 224 LLGALNPA--------AVQRVQDSALKQNINTLHNRINELGVAEPVIQQQGADRIVVQLP 275 Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248 G QD ++ ++LLG TA + V + + FG+ D DG LV +V Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDTPTAQAALLGGTVPFGLERYNDRDGRPILVRRQVV 335 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304 ++G +L A D +T + V ++ D GAR F +VTRDNIGK + G V+T Sbjct: 336 LTGENLQDAQPGRDTQTQQAAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 APVI I G+ QISG+ + E A A +LRAG+L ++IVEER +G LG+D+I KG Sbjct: 396 APVIRSEIAGGQVQISGSMSSEEAADTALLLRAGALAAPMSIVEERTIGPSLGADNISKG 455 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 + + G + I +F+I+ Y +G+ + + LNV+L LALLS+L ATLTLP IA I L + Sbjct: 456 FHSTLYGFLAIAVFIILYYHLFGVFSTIGLTLNVLLLLALLSMLQATLTLPGIAAIALTL 515 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+A+DSN+L+NERIREE R + ++ GF RA+ TI DSN+T LI + L FG G Sbjct: 516 GMAIDSNVLINERIREELRAGATPQQAIHQGFERAWGTILDSNLTTLIVGLALLAFGSGP 575 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +RGFA+ L IL SMF+++ VRA+ KK + Sbjct: 576 IRGFAVVHCLGILTSMFSSVVGVRALANLYYGRKKKLT 613 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 84/209 (40%), Gaps = 4/209 (1%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G ++ + + + +I +GP + + I KG + +A+ Sbjct: 407 QVQISGSMSSEEAADTALLLRAGALAAPMSIVEERTIGPSLGADNISKGFHSTLYGFLAI 466 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++I + + F + + L L++ L ++ L +AA+ +G +++ V++ Sbjct: 467 AVFIILYYHL-FGVFSTIGLTLNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLI 525 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 +R+R+ ++ + + I + G + +++ I L + +G I FA+ Sbjct: 526 NERIREELRA---GATPQQAIHQGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + Y + K Sbjct: 583 HCLGILTSMFSSVVGVRALANLYYGRKKK 611 Score = 38.9 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 21/124 (16%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I + IGLL LPNF +S + S + Sbjct: 3 RYPLWKYITVLIAVIIGLLYTLPNFYGESPAVQV------------------SSAKATIK 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + ++ + + + +G+ + + F + + D + L Sbjct: 45 VDAAMLSRVEQILTDAK--IPNQGVYYEQNGTLG-TVRARFTSTDLQLQARDLLDKSLNT 101 Query: 122 VNSK 125 V Sbjct: 102 VAGD 105 >gi|261363702|ref|ZP_05976585.1| protein-export membrane protein SecD [Neisseria mucosa ATCC 25996] gi|288568258|gb|EFC89818.1| protein-export membrane protein SecD [Neisseria mucosa ATCC 25996] Length = 617 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 169/506 (33%), Positives = 277/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R +++E I Sbjct: 104 NLLADSPEWMAKIGANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRREMRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQI+N + + D+ + K+ N + I++ Sbjct: 164 RTGTVRQIENGLIVPMQDAADVQKAMPKLRQLFSEAN------------LNADGNNITLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ I++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAINKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF--------LRDSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + K L+ +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPVKVREALEGNVPSGFELLSSSGDHPESLLINKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRSAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G Sbjct: 391 GRVEISGSMTQAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + LFM+V Y G + ++ N++ + +LS + ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VALFMVVYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R+ ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELREGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 83/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + A+ Sbjct: 393 VEISGSMTQAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 LFMVVYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRE---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.4 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + ++ +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIACSILVAVVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK+ GI + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALKQAGIQTDGIFIANNSLKVRFKDTETQLKARDVIENTL 95 >gi|241760374|ref|ZP_04758469.1| protein-export membrane protein SecD [Neisseria flavescens SK114] gi|241319252|gb|EER55730.1| protein-export membrane protein SecD [Neisseria flavescens SK114] Length = 617 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 164/508 (32%), Positives = 274/508 (53%), Gaps = 28/508 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + Y+ ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYAGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ Q +N +T+ D+ + ++ + I + Sbjct: 164 RTGTVHQAENGLTVPLQDAADVQKALPQLQKMFPEA------------TLVADGNNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ I++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAINKVRSDAVKQNINTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPN--------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + N + + LV +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPIKLQEALNGNVPTGYELLSSGGDHPETILVNKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTSANVGKRMAMVLIDQGKSEVVTAPVIRSAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM++ Y G + ++ N++ + +LS + ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VAAFMVIYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ + Sbjct: 511 NERIREELRGGIPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKMKS 522 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRKLR 598 Score = 155 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 82/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + A+ Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ I ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVIYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ I + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRG---GIPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 39.3 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIAFTIVVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ S L+ GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVSSALQSAGIQTDGMFIVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|332288531|ref|YP_004419383.1| preprotein translocase subunit SecD [Gallibacterium anatis UMN179] gi|330431427|gb|AEC16486.1| preprotein translocase subunit SecD [Gallibacterium anatis UMN179] Length = 603 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 161/524 (30%), Positives = 287/524 (54%), Gaps = 41/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + LGLDLRGG ++EVD + + D LR+ L+KE Sbjct: 93 NLAPATPTWLTDIGAGPMKLGLDLRGGVRFLMEVDLKSVLAKQQEQLQDSLRTELRKEKF 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +++ +N ++ AD+ ++ + N V + + +++ Sbjct: 153 VYKAIQSGENYSTVITLADNISPSDVVRVLKRK------------HANWDVVSNGQNVTL 200 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS+N + ++ A+EQ++ I+R+R++++G++E +Q+ G+ RI+++LPG QD +R +++ Sbjct: 201 TLSENELTRLRKSAVEQNITILRKRVNELGVAEPVVQQQGADRIVVELPGVQDTARAKEI 260 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + G+ D +G +V K + G H+ + Sbjct: 261 LGATATLEFRMVNQTANLAAAENGMVPSDSELQHDRNGTPVVVYRKTILGGEHITD-ANS 319 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 + + +P V+IS D G E T+ IGKP+A V + Sbjct: 320 GNDEYGRPQVNISLDSEGGNMMSEATKTAIGKPMATVYSEYKDSGKKDENGKAILTKHEE 379 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q+ +I+G + A L+ +LR+G+L + IVEER +G LG+ +I Sbjct: 380 VINVATIQSRLGNTFRITGINSPAEAQNLSVLLRSGALIAPIQIVEERTIGPSLGAQNIE 439 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A GL+++VLFM + Y K+GL+A+ ++ N+++ + L+SL+ ATL++P IAGIV Sbjct: 440 QGMQASFWGLLIVVLFMALYYRKFGLIANLALVANIVILVGLMSLIPGATLSMPGIAGIV 499 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G++VD+N+L+ ERI+EE R +SV +++ G+S A+S+IFD+N+T ++ V+L+ G Sbjct: 500 LSVGMSVDANVLIFERIKEELRNGRSVQQAINEGYSGAFSSIFDANLTTILTAVILYAVG 559 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L + ISMFTAI+ RA++ F+ K++ + I Sbjct: 560 SGPVKGFAITLSLGVAISMFTAITGTRAVVNFLYGGKRISKLSI 603 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 84/174 (48%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + +++++ + ++ F L A L+ +I +G +L Sbjct: 428 TIGPSLGAQNIEQGMQASFWGLLIVVLFMALYYR-KFGLIANLALVANIVILVGLMSLIP 486 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G SV+ V++++R+++ ++ S + I++ + Sbjct: 487 GATLSMPGIAGIVLSVGMSVDANVLIFERIKEELR---NGRSVQQAINEGYSGAFSSIFD 543 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ ++ + + G + FAI ++ G+ ++ ++I ++ F+Y + Sbjct: 544 ANLTTILTAVILYAVGSGPVKGFAITLSLGVAISMFTAITGTRAVVNFLYGGKR 597 >gi|294338529|emb|CAZ86858.1| protein-export membrane protein SecD [Thiomonas sp. 3As] Length = 656 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 182/514 (35%), Positives = 291/514 (56%), Gaps = 21/514 (4%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 + N L +S + +A+ N + LGLDLRGG H +L+VD V+ L S ELR Sbjct: 103 YVVAVNLLSRSP--AWLTALNANPMYLGLDLRGGVHFLLQVDMQAAVHKKLDSISGELRR 160 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+ + + ++ + + F D+ + +T + L + P+ Sbjct: 161 DLRDKDARYTKLERVGDTLQGVFVDASALNTAKELITRQ----HPDLQLAPQAP----AG 212 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +S L+ + Q +AI+Q+++ + RI+++G++E IQ+ G R++++LPG QD Sbjct: 213 SYSLSASLTPAAVSQEEDYAIKQNIQTLHNRINELGVAEPIIQQQGRDRVVVELPGIQDV 272 Query: 200 SRLRQLLGTTAKMSFHKVLP-------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 +R + +LG TA + V + G + D DG + +V+ V ++G Sbjct: 273 ARAKDILGRTASLEVRMVDDSAAAQAALAGQGPLPAGDQIFPDRDGGKLVVKRDVLLTGD 332 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVI 308 +L A FD +T++P V ++ D G+R F +VTR+N+GK A++L R ++TAPVI Sbjct: 333 NLTDAQPGFDQQTNEPAVFLTLDSKGSRIFQQVTRENVGKRTAMILFDRGRGEIITAPVI 392 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 I G+ QISG+ T++ A A +LRAG+L +NI+EER VG LG +I +G ++ Sbjct: 393 RSEIAGGRVQISGHMTVQEANDTALLLRAGALAAPMNIIEERTVGPSLGQQNISQGFHSV 452 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 G V IV+FM + Y +G+V+ + +N++L +A+LS+L ATLTLP IA + L +G+A+ Sbjct: 453 TWGFVAIVIFMSIYYMFFGVVSSIGLAVNLLLLVAVLSMLQATLTLPGIAAMALALGMAI 512 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 DSN+L+NERIREE R S ++ G+ RA++TIFDSN+T LIA V L FG GA+RGF Sbjct: 513 DSNVLINERIREELRNGASPQNAIFHGYERAWATIFDSNVTTLIAGVALLIFGSGAIRGF 572 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 A+ L IL SMF+A+ R ++ K+ Sbjct: 573 AVVHVLGILTSMFSAVFFSRGIINLWYGRKRRLH 606 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 88/208 (42%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G Q + + + I VGP + ++ I +G V +A++ Sbjct: 401 VQISGHMTVQEANDTALLLRAGALAAPMNIIEERTVGPSLGQQNISQGFHSVTWGFVAIV 460 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 I++ I + + F + + L +++ + ++ L +AA+ +G +++ V++ Sbjct: 461 IFMSIYYMF-FGVVSSIGLAVNLLLLVAVLSMLQATLTLPGIAAMALALGMAIDSNVLIN 519 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ S ++ I +++ I+ + + ++G I FA+ Sbjct: 520 ERIREELR---NGASPQNAIFHGYERAWATIFDSNVTTLIAGVALLIFGSGAIRGFAVVH 576 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + S++F + I+ Y + + Sbjct: 577 VLGILTSMFSAVFFSRGIINLWYGRKRR 604 >gi|292487441|ref|YP_003530313.1| protein-export membrane protein SecF [Erwinia amylovora CFBP1430] gi|292898683|ref|YP_003538052.1| protein-export membrane protein [Erwinia amylovora ATCC 49946] gi|291198531|emb|CBJ45639.1| protein-export membrane protein [Erwinia amylovora ATCC 49946] gi|291552860|emb|CBA19905.1| Protein-export membrane protein secF [Erwinia amylovora CFBP1430] gi|312171544|emb|CBX79802.1| Protein-export membrane protein secF [Erwinia amylovora ATCC BAA-2158] Length = 322 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 163/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 S + FM IS + I ++ ++ G N+G+DF GG + + + Sbjct: 5 HSVEQMNHGRKVYDFMHWDKLAFIISGILLIIAVAIIGVRGFNWGLDFTGGTVIEINLEQ 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL ++R +L+ + QNF ++ +VR+ G+ + +++ Sbjct: 65 PADLDMMRGSLQKAGFAEPQVQNFGSSRDVMVRMAPAEGN-AGEALGSKVLGIVNEATGQ 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+L YI RF+W ALG + L D+ T Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGGMALLSALIAILFYIGFRFEWRLALGTVLALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+NDK+VV DR+R+N + S+ D+ + S+ + Sbjct: 184 MGLLSLFQIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS+ VL + ++GG+++ F++ M GI + SSI++++ + L + R Sbjct: 243 TLSRTIITSVTTLAMVLILFIFGGALLKGFSLTMLIGITIGTISSIYVSSALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|269121336|ref|YP_003309513.1| protein-export membrane protein SecF [Sebaldella termitidis ATCC 33386] gi|268615214|gb|ACZ09582.1| protein-export membrane protein SecF [Sebaldella termitidis ATCC 33386] Length = 308 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 81/289 (28%), Positives = 149/289 (51%), Gaps = 2/289 (0%) Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 M+ R S + S+ +FT G N GIDF GG + +PV + L+ + Sbjct: 6 MKTRNVYFIFSTFMILFSLFSIFTKGFNLGIDFTGGNIYQMKFEKPVSKEAMDKTLKEMA 65 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 S + + + +A + + +++ + + VG + Sbjct: 66 SKYPSLK--SNKVQYSEGNTVLLRTQIADEKEKSAILEELKAEQGNYELIKADAVGAVVG 123 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 EL + + + + +I +LIYI IRF+W +AL ++ L+ D+ T+GF + F E + Sbjct: 124 NELAKNALWALALGSILILIYITIRFEWIYALSSVLALLHDVLVTIGFISFFQFEVDTPF 183 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 +AA+LT++GYS+ND +V++DR+R+N Y F D+ID+S+N+ RSVYTS+ ++ Sbjct: 184 IAAILTILGYSMNDTIVIFDRIRENDHKYGGKKPFADVIDESVNKVFIRSVYTSLTTLLA 243 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + ++GGS + +F I + GIV SSI++A+P++ + ++ Sbjct: 244 LAALLIFGGSTLRTFNITLLVGIVYGTYSSIWLASPLVYLLRRFKKPPK 292 >gi|261341002|ref|ZP_05968860.1| protein-export membrane protein SecD [Enterobacter cancerogenus ATCC 35316] gi|288316866|gb|EFC55804.1| protein-export membrane protein SecD [Enterobacter cancerogenus ATCC 35316] Length = 604 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 170/537 (31%), Positives = 294/537 (54%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 89 VVALNLAPATPRWLAALNAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQN 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LRS L+++GI ++R+ N ++++F D ++ +T + Sbjct: 140 IDSLRSDLREKGIAYTTVRKEDNYGLSITFRDGAARDQAVTYLTQRHR-----------D 188 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + ++ V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++ Sbjct: 189 LVITSQGSNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVE 248 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N + G + +G ++ +V Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREGQPVVLYKRV 308 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302 ++G H+ +T++ + ++P V+IS D G T+DNIGKP+A + Sbjct: 309 ILTGDHITDSTSS-QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKK 367 Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 368 DANGRSVLVKEEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEE 427 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LG +I +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL Sbjct: 428 RTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIIGIMSLLP 487 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE +SV +++ G+ A+S+IFD+N+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIEEGYKGAFSSIFDANV 547 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 548 TTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N S+ + + N ++ L G + + + Sbjct: 358 FVEYKDSGKKDANGRSVLVKEEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I++G+ + + ++++ +K F L A + L+ ++ Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ + + S + I++ Sbjct: 477 VLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIEE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I VL + G I FAI G+ + ++I I+ + Sbjct: 534 GYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593 Query: 824 YDWRAKNA 831 Y + Sbjct: 594 YGGKRVKK 601 >gi|114046955|ref|YP_737505.1| preprotein translocase subunit SecD [Shewanella sp. MR-7] gi|113888397|gb|ABI42448.1| protein-export membrane protein SecD [Shewanella sp. MR-7] Length = 616 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 160/522 (30%), Positives = 279/522 (53%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + RS L++E I Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D+ + + D + + + + V Sbjct: 164 RYAGIRNNAQGIEIKFRDAESLASAERFLKSRSN--------DMVFSDVSKGEDFALQAV 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ + Q+ A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 MSETYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + +G Q +++ +V ++G H+ GA +F Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRVPAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 D + +P V I+ D G F VT+DNIGKP+A + + + Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394 Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 A LA +LRAG+L ++IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+ ++++FM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 VQAMIWGMAVVLIFMLVYYRSFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 A++GFA+T+ + I SMFTAI R+++ I K++K++ I Sbjct: 575 AIKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI 616 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 93/241 (38%), Gaps = 6/241 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S R+ S+++ I + + + + ++ + Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I +GP + E I G+ +I +LI++ + ++ F L A L ++ +G Sbjct: 436 IVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYR-SFGLIANLALTANLVMVVGV 494 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828 ++ F++ L + G I FA+ + GI + ++I I+ R Sbjct: 552 STIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRV 611 Query: 829 K 829 K Sbjct: 612 K 612 >gi|319944504|ref|ZP_08018775.1| protein-export membrane protein SecD [Lautropia mirabilis ATCC 51599] gi|319742217|gb|EFV94633.1| protein-export membrane protein SecD [Lautropia mirabilis ATCC 51599] Length = 625 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 152/529 (28%), Positives = 269/529 (50%), Gaps = 28/529 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL A P +L Q + LGLDLRGG H ++++D + +N L Sbjct: 105 ITALNLLSASPTWLTQLHA---------LPMYLGLDLRGGVHFLMQIDTTEALNKRLDSA 155 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 ++R+ L+ + +++ ++ L F ++ Q + D Sbjct: 156 MADVRTLLRDRKVRHNGIKRNGKQLVLDF--------ASEDARTRAQELLRDNQADLAVQ 207 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + + ++ + L+++ + + ++++Q++ + RI+++G++E IQR G+ RI++QL Sbjct: 208 ERGSGAQSQLLLTLTESAMRTFLDNSVQQNITTLNNRINELGVAEPVIQRQGADRIVVQL 267 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF--------MFGVRFLRDSDGNQYLVED 245 PG QD +R + +LG TA + V + + FG R G ++ Sbjct: 268 PGVQDTARAKDILGRTATLEARLVDMSPEAQRALTSENGVVPFGSDLFRQGRGAPVVLRR 327 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305 + +G L A+A FD V + G ++ V+ + Sbjct: 328 EPIFTGQQLTNASATFDEHQQPAVAVSLNEAGGRHLREVSRKNIHKPMAVVLFEKGKGEV 387 Query: 306 PVI--NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 + Q+ + QI+G + + AG LA +LRAG+L ++I+EER +G LG+++I K Sbjct: 388 LTVATIQSELGSRFQITGMGSAKNAGDLALLLRAGALAAPMDIIEERTIGPSLGAENISK 447 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G ++ G + I +FMIV Y +GL + ++ N+++ +A+LSLL ATLTLP IA I L Sbjct: 448 GFQSVTWGFLAIAVFMIVYYLLFGLFSTVALGFNLLMLVAVLSLLQATLTLPGIAAIALT 507 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+A+D+N+L+NER+REE RK S ++ G+ A++TI D+NIT LIA + L FG G Sbjct: 508 LGMAIDANVLINERVREELRKGASPQMAISAGYEHAWATILDANITTLIAGLALLAFGSG 567 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFII-RYKKMKSIDINPLSRF 531 ++GFA+ L IL SMF+A+ + R ++ K++K + + Sbjct: 568 PIKGFAVVHCLGILTSMFSAVFVSRGLVNLWYGGKKRVKHLSVGQSDWH 616 Score = 156 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 84/205 (40%), Gaps = 4/205 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A+ + + + I +GP + E I KG V +A+ +++ + + Sbjct: 408 SAKNAGDLALLLRAGALAAPMDIIEERTIGPSLGAENISKGFQSVTWGFLAIAVFMIVYY 467 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 F L + L ++ + +L L +AA+ +G +++ V++ +R+R+ + Sbjct: 468 -LLFGLFSTVALGFNLLMLVAVLSLLQATLTLPGIAAIALTLGMAIDANVLINERVREEL 526 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + S + I + ++ I+ L + +G I FA+ GI+ + Sbjct: 527 R---KGASPQMAISAGYEHAWATILDANITTLIAGLALLAFGSGPIKGFAVVHCLGILTS 583 Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833 S++F++ ++ Y + + + Sbjct: 584 MFSAVFVSRGLVNLWYGGKKRVKHL 608 Score = 45.1 bits (104), Expect = 0.057, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 25/120 (20%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W L + L+ LPNF +S +++ Sbjct: 3 RYPFWRYALIGLALIFSLIYTLPNFYGESPA-------------------------VQIS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + L K GI + + N + + F + + D + + Sbjct: 38 SQKATIKVDAATESQALAALDKAGIPNTGVLRDDNSVKIRFDTTDTQLRARDVLEKAMNP 97 >gi|84517341|ref|ZP_01004695.1| protein-export membrane protein SecF [Loktanella vestfoldensis SKA53] gi|84508821|gb|EAQ05284.1| protein-export membrane protein SecF [Loktanella vestfoldensis SKA53] Length = 322 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 182/310 (58%), Gaps = 7/310 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P+ I F R + G S L + S+ + +GLN+GIDF+GG + + + Sbjct: 1 MRLRLVPEQTNINFFRYAWLSFGASALMVVMSLVVFVVYGLNFGIDFRGGTSIRTESTQS 60 Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD++ R L L++GD D + ++R+Q Q GD + + ++ + Sbjct: 61 VDVAAYREALNPLELGDISITQVFDPTFDDDQNVAMIRIQAQDGDESISPQTIAQIQDAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + P T + E VGPK+S ELIR ++ V+ + A++IYIW+RF+W FA+GA+ LI Sbjct: 121 RGVAPDITFPSVESVGPKVSGELIRTAVMAVLGALTAIVIYIWLRFEWQFAVGAVAALIH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F++F I F+L +AA+LT++GYS+ND VVV+DR R+N++ Y + D+++ Sbjct: 181 DVALTIGIFSMFQIRFDLAIIAALLTIVGYSINDTVVVFDRARENLRKY-KAKPLVDVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 S NETL R++ TS I+++ + V GG VI F +A+GI+V SS+++A I+L Sbjct: 240 LSANETLSRTIMTSGTTLIALIALLVLGGDVIRGFVFAIAWGIIVGTYSSLYVAKNIVLM 299 Query: 823 IYDWRAKNAR 832 + R + + Sbjct: 300 LGVKRDWSKK 309 >gi|121606773|ref|YP_984102.1| preprotein translocase subunit SecD [Polaromonas naphthalenivorans CJ2] gi|120595742|gb|ABM39181.1| protein-export membrane protein SecD [Polaromonas naphthalenivorans CJ2] Length = 625 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 158/514 (30%), Positives = 277/514 (53%), Gaps = 20/514 (3%) Query: 19 LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78 + N L +S + +++ N + LGLDLRGG H +L+VD + + + ++R Sbjct: 103 AYVVALNLLSRSP--AWLTSLNANPMYLGLDLRGGVHFMLQVDMQAALTKRAESLAGDIR 160 Query: 79 SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT 138 L+++ I + + I + F DS + + + + D + Sbjct: 161 LSLREKNIRHGGIARNGQAIEIRFRDSATLTSAKNLIQDQI--------PDLQMVEAPDG 212 Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198 T+ +++ + ++ A++Q+M + RI+++G++E IQ+ G RI++QLPG QD Sbjct: 213 TDYKLTATIKPEAARRIQDQALKQNMVTLHNRINELGVAEPVIQQQGIDRIVVQLPGVQD 272 Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------DGNQYLVEDKVEISG 251 ++ + +LG TA + V + + G + +G +V+ +V ++G Sbjct: 273 TAKAKDILGRTATLEMRLVEDSAEARAAESGSGPVPFGSERFFERNGQAVIVKKQVILTG 332 Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVI 308 +L A FD + +P VD++ D G R + +R+N+ K +A++L + + + Sbjct: 333 ENLTDAQPGFDSQNQQPKVDLTVDAKGGRIMRDTSRENLKKRMAILLFEKGKGEVLTAPV 392 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q + QISG+ ++ A LA +LRAGSL ++I+EER +G LG+++I KG ++ Sbjct: 393 IQGELGNRFQISGSMSVNEASDLALLLRAGSLAAPMDIIEERTIGPTLGAENITKGFHSV 452 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 G +IV FM Y +GL + ++ +N++L +A+LS+L ATLTLP +A + L +G+A+ Sbjct: 453 SWGFAVIVAFMATYYMLFGLFSGIALAVNLLLLVAVLSMLQATLTLPGMAAMALALGMAI 512 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 DSN+L+NERIREE R S ++ G+ RA++TI DSNI+ LIA + L FG G VRGF Sbjct: 513 DSNVLINERIREELRNGASPQAAIHAGYERAWATILDSNISTLIAGLALLAFGSGPVRGF 572 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 A+ + IL SMF+A+ R ++ +K Sbjct: 573 AVVHCIGILTSMFSAVFFSRGLVNLWYGRQKKLK 606 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 82/209 (39%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G + + + I +GP + E I KG V ++ ++ Sbjct: 404 SGSMSVNEASDLALLLRAGSLAAPMDIIEERTIGPTLGAENITKGFHSVSWGFAVIVAFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F L + L +++ + ++ L +AA+ +G +++ V++ +R+ Sbjct: 464 ATYY-MLFGLFSGIALAVNLLLLVAVLSMLQATLTLPGMAAMALALGMAIDSNVLINERI 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + ++++ I+ L + +G + FA+ G Sbjct: 523 REELR---NGASPQAAIHAGYERAWATILDSNISTLIAGLALLAFGSGPVRGFAVVHCIG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y + K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGRQKKLKTV 608 Score = 47.4 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 29/120 (24%), Gaps = 25/120 (20%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W L ++ I L LPNF ++ ++V Sbjct: 3 RYPAWKYALIVVVLLIAALYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + LK+ I + I F D + D + L Sbjct: 38 SSKSTVKVDTTTLARVEQALKEANISADGITLEAGSIKARFGDVDTQGKAKDAIQKALTP 97 >gi|56552793|ref|YP_163632.1| preprotein translocase subunit SecD [Zymomonas mobilis subsp. mobilis ZM4] gi|241762469|ref|ZP_04760546.1| protein-export membrane protein SecD [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753481|ref|YP_003226374.1| preprotein translocase subunit SecD [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56544367|gb|AAV90521.1| protein-export membrane protein SecD [Zymomonas mobilis subsp. mobilis ZM4] gi|241372971|gb|EER62638.1| protein-export membrane protein SecD [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552844|gb|ACV75790.1| protein-export membrane protein SecD [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 527 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 186/525 (35%), Positives = 302/525 (57%), Gaps = 12/525 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W + ++ +G+ +A+P+ LP ++ +F I+ GLDL GGSH++LE D Sbjct: 5 PRWKIWSIILVLVLGVFLAIPSLLPSNLDQKFGLGALPR-INFGLDLSGGSHILLEADTA 63 Query: 64 DFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + + + +RS + + I + M ++++ D+ ++ + V G Sbjct: 64 DVAHQRIVTMEEMVRSQISRAQPAITIGDMSADNDQLSFMVRDNHQLDSAVEAVRTLTNG 123 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + + D + I + ++ I ++ A+E + E++R+RID +G E I Sbjct: 124 IGATGQRDWD---VRVVDGNRIVMRPTKAGIQSFVNQAMEGATEVVRKRIDSLGTREPII 180 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-----FMFGVRFLRDS 236 R GS RI++Q+PG Q+PS L+ L+G TAK+ F V + G + + Sbjct: 181 IRQGSDRIVVQVPGLQNPSALKALIGKTAKLEFKLVDDSVKSADLAQGKVPIGTQVMIAQ 240 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 G V+ + ++G+ L + P V ISF+ G RRF EVT+ N GK A+ Sbjct: 241 SGQPVAVQRRAIVTGVDLV-HADQTMDQNSLPAVSISFNADGGRRFAEVTQKNPGKRFAI 299 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 +LD +L+AP IN+ I G A I+G+FTI++A +A LR+GSLP+ L +VEER VG L Sbjct: 300 ILDNVILSAPSINEPILGGSAIITGSFTIDSANQMAIALRSGSLPVALKVVEERTVGPGL 359 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G+DSI GT A +V IV+FMI +YG++G+ A ++ LN+ L LA++++LGATLTLP Sbjct: 360 GADSIRAGTLACSIAIVAIVIFMISVYGRFGIYASSAVILNLFLILAVMAVLGATLTLPG 419 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAG+VL IG AVD+N+L+NERIREE + ++ ++DMG+ A TIFD+N+T I+ ++ Sbjct: 420 IAGLVLTIGAAVDANVLINERIREEIGRGRTPVHAVDMGYKEASRTIFDANVTHAISALI 479 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521 + FG G V+GFA+ + + I+ S+FTA++ R ++ +R + K Sbjct: 480 MICFGSGPVKGFAVVLLIGIITSVFTAVTFTRMLVALYLRRRPAK 524 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 77/170 (45%), Gaps = 4/170 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + IR G + I+ +A++I++ + F + A + +IL++ L A+ G Sbjct: 356 GPGLGADSIRAGTLACSIAIVAIVIFMISVYG-RFGIYASSAVILNLFLILAVMAVLGAT 414 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++ +R+R+ + + +D E ++ Sbjct: 415 LTLPGIAGLVLTIGAAVDANVLINERIREEI---GRGRTPVHAVDMGYKEASRTIFDANV 471 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 IS L M +G + FA+ + GI+ + +++ ++ R Sbjct: 472 THAISALIMICFGSGPVKGFAVVLLIGIITSVFTAVTFTRMLVALYLRRR 521 >gi|82703542|ref|YP_413108.1| preprotein translocase subunit SecD [Nitrosospira multiformis ATCC 25196] gi|82411607|gb|ABB75716.1| protein-export membrane protein SecD [Nitrosospira multiformis ATCC 25196] Length = 614 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 166/518 (32%), Positives = 285/518 (55%), Gaps = 20/518 (3%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74 + N LP S ++ +++ + LGLDLRGG H +LEVD ++ L +S Sbjct: 94 LLGNGYMVALNLLPNSP--QWLTSIGALPMYLGLDLRGGVHFLLEVDMKGALSKALDRFS 151 Query: 75 DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134 ++R L+++ I + + + I + F ++ + ++ D Sbjct: 152 SDIRGSLREKKIPYAGLDKRGSLIIVKFRNAESRAQAEAEIKKNY--------PDLDLRE 203 Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194 +TE ++ L ++ A++Q++ +R R++++G++E IQ+ G+ R+++QLP Sbjct: 204 ENVSTEFHLAATLRPEAQKRIQDAAVQQNITTLRNRVNELGVAEPIIQQAGADRVVVQLP 263 Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEI 249 G QD ++ + +LG TA + V + FG + G LV+ +V + Sbjct: 264 GVQDTAKAKDILGRTATLEVRMVDEEHDLSAALRGQIPFGSELYSERGGGPLLVKKQVVL 323 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTA 305 +G +N A F ++P V ++ D GAR F ++TRDN+GK + V+TA Sbjct: 324 TGDRINDAQPGF-DNNNQPAVHLNLDNSGARIFQQLTRDNVGKRMAILLIEKNQAEVITA 382 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 PVI + I G+ QISG T E A +A +LRAG+L ++IVEER VG LG+++I G Sbjct: 383 PVIREEIGGGRVQISGRMTSEEARDVALLLRAGALAAPMDIVEERTVGPSLGAENIESGF 442 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + + G I +FM + Y +G ++ ++ +N++L + LLS+L ATLTLP +A I L +G Sbjct: 443 NSTLYGFAAIAVFMTIYYLVFGFISVLALGVNLLLLVGLLSILQATLTLPGMAAIALTLG 502 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NERIR+E R+ + +++ G+ RA++TI DSNIT LIA + LF FG G + Sbjct: 503 MAIDANVLINERIRDELREGMAPQAAINAGYERAWATILDSNITTLIAGIALFAFGSGPI 562 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 +GFA+ + L IL SMF+A+ + R + + ++ Sbjct: 563 KGFAVVLCLGILTSMFSAVMVSRGFVNLVYGSRRKLER 600 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 88/212 (41%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G ++ + + + I VGP + E I G + A+ Sbjct: 394 VQISGRMTSEEARDVALLLRAGALAAPMDIVEERTVGPSLGAENIESGFNSTLYGFAAIA 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ I + F ++ L +++ +G ++ L +AA+ +G +++ V++ Sbjct: 454 VFMTIYY-LVFGFISVLALGVNLLLLVGLLSILQATLTLPGMAAIALTLGMAIDANVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R ++ ++ + I+ + +++ I+ + + +G I FA+ + Sbjct: 513 ERIRDELRE---GMAPQAAINAGYERAWATILDSNITTLIAGIALFAFGSGPIKGFAVVL 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++ ++ + +Y R K R+ Sbjct: 570 CLGILTSMFSAVMVSRGFVNLVYGSRRKLERV 601 Score = 42.8 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + ++ +GLL LPNF +S + + GL Sbjct: 3 RYPAWKYLFIAVSILLGLLYTLPNFYGESPAVQISPLRNAAKADTGL------------- 49 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + LKK + M I + FAD+ + D + L Sbjct: 50 ------------LNRVEEALKKADLPTTGMFLEGGSIKVRFADTDTQIRARDALQSLL 95 >gi|296101529|ref|YP_003611675.1| preprotein translocase subunit SecD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055988|gb|ADF60726.1| preprotein translocase subunit SecD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 604 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 170/518 (32%), Positives = 290/518 (55%), Gaps = 37/518 (7%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 R+ +A+ + LGLDLRGG H ++EVD D + + D LRS L+++GI ++R Sbjct: 99 PRWLAALSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIAYTTVR 158 Query: 93 QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + N ++++F DS ++ D +T + ++ ++ V++ Sbjct: 159 KEDNYGMSITFRDSAARDQAVDYLTQRHR-----------DLVITAQGSNQLRAVMTDAR 207 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++LG TA Sbjct: 208 LKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATAT 267 Query: 212 MSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V N + G +G ++ +V ++G H+ +T++ + + Sbjct: 268 LEFRLVNTNVDQSAAASGRIPGDSEVKETREGQPVVLYKRVILTGDHITDSTSS-QDEYN 326 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------LTAPVI 308 +P V+IS D G T+DNIGKP+A + + Sbjct: 327 QPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKEEEVINIAN 386 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I +G A Sbjct: 387 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIQQGLEAC 446 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 +AGL + +LFMI Y K+GL+A ++ N++L + ++SLL ATLT+P IAGIVL + +A Sbjct: 447 LAGLAVSILFMIFFYKKFGLIATSALIANLVLIIGIMSLLPGATLTMPGIAGIVLTLAVA 506 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+NERI+EE +SV ++D G+ A+S+IFD+N+T LI ++L+ G GA++G Sbjct: 507 VDANVLINERIKEELSNGRSVQQAIDEGYKGAFSSIFDANVTTLIKVLILYAVGTGAIKG 566 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 FAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 567 FAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 94/248 (37%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ + + N ++ L G + + + Sbjct: 358 FVEYKDSGKKDANGRAVLVKEEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I++G+ + ++++ +K F L A + LI ++ Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIQQGLEACLAGLAVSILFMIFFYK-KFGLIATSALIANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ + + S + ID+ Sbjct: 477 VLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I VL + G I FAI G+ + ++I I+ + Sbjct: 534 GYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593 Query: 824 YDWRAKNA 831 Y + Sbjct: 594 YGGKRVKK 601 >gi|288574630|ref|ZP_06392987.1| protein-export membrane protein SecF [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570371|gb|EFC91928.1| protein-export membrane protein SecF [Dethiosulfovibrio peptidovorans DSM 11002] Length = 292 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 86/289 (29%), Positives = 149/289 (51%), Gaps = 8/289 (2%) Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 FM R + +S++ + S+ LF+ GLN GIDF GG + + PV++ VR L Sbjct: 8 RFDFMAFRKKAMVLSMVLLLVSLGSLFSRGLNLGIDFTGGNLVQLEFGSPVEVGEVRDVL 67 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 + Q + + + V + + E VG Sbjct: 68 AGVGQDKAVIQAYSDKG-------VIIRMKADEEDARRDVLNALKAKYDSVQVLRFEKVG 120 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 P + +L ++ + + ++ + +LIYI +RF++ FA+ ++ L+ D TLG F++ G E Sbjct: 121 PVVGDQLRKEAFIALGLALVGILIYITVRFQFRFAVVSVLALLHDSIITLGIFSIMGREI 180 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 ++T +AA+LT++GYS+ND +VV DR+R+N + L + S+N+TL R++ TS+ Sbjct: 181 SVTFIAAILTIVGYSLNDTIVVLDRVRENW-KHLRGWGIDGLFNVSVNQTLSRTINTSLT 239 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 F+ VL +WGG V+ +F+ + GIVV SSI++A+ IL + Sbjct: 240 TFLPVLAFYIWGGPVLSNFSFALMVGIVVGTYSSIYVASSILDEWFTKS 288 >gi|77359288|ref|YP_338863.1| preprotein translocase auxillary membrane component [Pseudoalteromonas haloplanktis TAC125] gi|76874199|emb|CAI85420.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Pseudoalteromonas haloplanktis TAC125] Length = 619 Score = 216 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 160/519 (30%), Positives = 266/519 (51%), Gaps = 35/519 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + A+ N + LGLDL GG H +E+D V+ L+ ++ RS L++E + S+R Sbjct: 110 PAWLKAVGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEEDFRSDLREEKLRYRSVR 169 Query: 93 Q--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 + +++ + K+ + + ++ + +S+ Sbjct: 170 RVAGSDRMRVEMRSEEDKDAAERFLKTQYPL---------NVYIDDSSNDNAFYATMSEQ 220 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 + ++ +AI+Q+ IIR RI+QIG++E +QR G+ RI++QLPG QD +R +++LG TA Sbjct: 221 KLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPGIQDTARAKEILGATA 280 Query: 211 KMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 + F +V N G + DG +++ ++ + G H+ GA + D Sbjct: 281 TLEFREVEENADISAAAQGRIPPGTEMIMSRDGYPVVLKKRIILEGSHITGAQSGSDEYQ 340 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------LTAPV 307 V + GA+ R + V ++ + + Sbjct: 341 RPQVSITLDSKGGAKMNAFTKRAIGKRMATVFIEYKPSGKKDADGKALPPIKVEEVINVA 400 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 QA +I+G A L+ +LRAG+L + IVEER VG LG ++I G A Sbjct: 401 TIQARLDRSFRITGIDNPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIEAGMTA 460 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGL 426 + G ++ FM++ Y +G+VA+ ++ N++L + ++SL+ ATLTLP IAGIVL +G+ Sbjct: 461 VALGFAFVLAFMLIYYKGFGMVANLALAANLVLIIGVMSLIPGATLTLPGIAGIVLTVGM 520 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 AVD+N+L+ ERIREE +S ++ G+ A+STIFD+NIT LIA V+LF G G + Sbjct: 521 AVDANVLIFERIREELADGRSPQQAVHFGYDSAFSTIFDANITTLIAAVILFAVGTGPIA 580 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GFA+T+ + IL SMFTAI RA++ I K++ + I Sbjct: 581 GFAVTLAIGILTSMFTAIVGTRAIINLFIGGKRVDKLSI 619 Score = 149 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 75/172 (43%), Gaps = 5/172 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716 GP + +E I G+ V + +L ++ I +K F + A L ++ +G +L G Sbjct: 446 GPSLGQENIEAGMTAVALGFAFVLAFMLIYYK-GFGMVANLALAANLVLIIGVMSLIPGA 504 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 L +A ++ +G +V+ V++++R+R+ + S + + + + Sbjct: 505 TLTLPGIAGIVLTVGMAVDANVLIFERIREELAD---GRSPQQAVHFGYDSAFSTIFDAN 561 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + I+ + + G I FA+ +A GI+ + ++I I+ + Sbjct: 562 ITTLIAAVILFAVGTGPIAGFAVTLAIGILTSMFTAIVGTRAIINLFIGGKR 613 Score = 52.4 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 87/288 (30%), Gaps = 38/288 (13%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +GLL A PN + ++V Sbjct: 4 KFPLWKYLLVLAVVAVGLLYASPNLYGRDPA-------------------------IQVS 38 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 + L D++ + LKK + V S + +I + F + + D + L Sbjct: 39 GAKGADVDL-SVIDKVNATLKKHNVSVKSTKLEDGQILVRFRNVEEQLKAQDLLRNSLSD 97 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI----------DQVISHAIEQSMEIIR-Q 169 S +N+ P + + + + + + +EQ E R Sbjct: 98 DYISAINMAPAQPAWLKAVGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEEDFRSD 157 Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 ++ S + GS R+ +++ E+D + L T ++ + +N + Sbjct: 158 LREEKLRYRSVRRVAGSDRMRVEMRSEEDKDAAERFLKTQYPLNVYIDDSSNDNAFYATM 217 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 + + +++ I A + + I Sbjct: 218 SEQKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPG 265 >gi|83647161|ref|YP_435596.1| preprotein translocase subunit SecD [Hahella chejuensis KCTC 2396] gi|83635204|gb|ABC31171.1| protein-export membrane protein SecD [Hahella chejuensis KCTC 2396] Length = 620 Score = 216 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 155/532 (29%), Positives = 275/532 (51%), Gaps = 33/532 (6%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 + N P + + S + + LGLDLRGG H ++EVD V +++ ++++ Sbjct: 100 YVVALNLAPTTP--AWLSNLGAAPMKLGLDLRGGVHFLMEVDLAKAVATTMEITQGDIKT 157 Query: 80 FLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT 138 L++EG+ S+ +I++ F D +++ ++ + ++ Sbjct: 158 KLREEGLRYKSVDILTPRQISVGFRDEDDRDSALSLARREFDDFLAESAEESGLFMV--- 214 Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198 + L ++ ++ +AI Q++ +R R++++G++E +QR G RI+++LPG QD Sbjct: 215 -----KLTLLESRAKEIEDYAISQNLSTLRNRVNELGVAEPLVQRQGRGRIVVELPGVQD 269 Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258 + +++LG+TA + F ++ G + F S+ +E + I+G + A Sbjct: 270 TAEAKRILGSTANLEFRLEARPDASAGSIEKFEFR--SEPRTASLERDIIITGGSVANAQ 327 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNI--------------------GKPLAVVL 298 +FD V G + F G+P Sbjct: 328 QSFDENGRPEVNIKLDSLGGNKMFHVTKDAVQRNMGVLFVEYKEEVDAKSTNGQPKKRRY 387 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 + + + Q+ +I+G ++ A LA +LR+G+L + VEER VG LG Sbjct: 388 VEKKIISLATIQSPLGNSFRITGLDSVFEAKELALLLRSGALAAPIYFVEERTVGPSLGL 447 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 ++I G ++ G VL++LFMIV Y +G+VA+ ++ NV + +A++SL+ ATLTLP IA Sbjct: 448 ENIKDGATSVAIGFVLVMLFMIVYYRVFGIVANIALAANVFILIAVMSLMSATLTLPGIA 507 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GIVL +G+AVD+N+L+ ERIREE R ++ G+ RA+ +IFD+N+T LIA ++LF Sbjct: 508 GIVLTVGMAVDANVLIYERIREELRNGLPPQSAIHAGYDRAFVSIFDANVTTLIAALILF 567 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530 G G V+GFA+T+ + IL SMFTAI++ RA++ I + + S+ I + + Sbjct: 568 AIGTGPVKGFAVTLSIGILTSMFTAITVTRAVVNMIYGGRNVGSLSIGGVKQ 619 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 97/267 (36%), Gaps = 4/267 (1%) Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620 + + + L V VD + + + + ++ L Sbjct: 345 LGGNKMFHVTKDAVQRNMGVLFVEYKEEVDAKSTNGQPKKRRYVEKKIISLATIQSPLGN 404 Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G + + + VGP + E I+ G V I + + Sbjct: 405 SFRITGLDSVFEAKELALLLRSGALAAPIYFVEERTVGPSLGLENIKDGATSVAIGFVLV 464 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++++ + ++ F + A L ++ + +L L +A ++ +G +V+ V++ Sbjct: 465 MLFMIVYYRV-FGIVANIALAANVFILIAVMSLMSATLTLPGIAGIVLTVGMAVDANVLI 523 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 Y+R+R+ ++ + + I + ++ I+ L + G + FA+ Sbjct: 524 YERIREELR---NGLPPQSAIHAGYDRAFVSIFDANVTTLIAALILFAIGTGPVKGFAVT 580 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ GI+ + ++I + ++ IY R Sbjct: 581 LSIGILTSMFTAITVTRAVVNMIYGGR 607 Score = 49.3 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L ++ +G + ALPN P + GS +EVD Sbjct: 4 KYPLWKNLLVVIVLMMGFIYALPNLYPDDYALQI----------------SGSRGSIEVD 47 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + + L + GI + + I + FAD+ + + V L Sbjct: 48 ---------ESVLKKAKDALDEAGIAYGEAKVGEKNIIIRFADNDTQLDAQPHVKSAL 96 >gi|57167975|ref|ZP_00367114.1| protein-export membrane protein SecF [Campylobacter coli RM2228] gi|305431874|ref|ZP_07401041.1| protein-export membrane protein SecF [Campylobacter coli JV20] gi|57020349|gb|EAL57018.1| protein-export membrane protein SecF [Campylobacter coli RM2228] gi|304444958|gb|EFM37604.1| protein-export membrane protein SecF [Campylobacter coli JV20] Length = 323 Score = 216 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 159/285 (55%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FMR RF + +SI+ SI LL+ GL +GIDF GG + + + + +R LE Sbjct: 10 YDFMRMRFAAISLSIVLFFGSIYLLWDRGLQFGIDFSGGTLIQLKYDTAAPIPQIREILE 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 G K + DS+ + + + ++ ++VGP Sbjct: 70 KQGSFQNLSVTEFGSKEEITIRFLGSNDSLGSD--IGEHISTLLKDTGKFEVRRADVVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KGI+ +I+S +A+LIYI IRF+W FAL AI + I D+ TLG +LF I+ N Sbjct: 128 KVGDELRNKGIMAIIVSLVAILIYIAIRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AAVLT++GYS+ND ++++DR+R+ +K + +I++S++ TL R+V TS Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKSELAPIINESVSATLSRTVLTSGLT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +V+ + +GG +I F++ + GIVV SSIF+A+P LL+ Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIVVGTLSSIFVASPTLLWFK 291 >gi|296134583|ref|YP_003641825.1| protein-export membrane protein SecD [Thiomonas intermedia K12] gi|295794705|gb|ADG29495.1| protein-export membrane protein SecD [Thiomonas intermedia K12] Length = 656 Score = 216 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 182/514 (35%), Positives = 291/514 (56%), Gaps = 21/514 (4%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 + N L +S + +A+ N + LGLDLRGG H +L+VD V+ L S ELR Sbjct: 103 YVVAVNLLSRSP--AWLTALNANPMYLGLDLRGGVHFLLQVDMQAAVHKKLDSISGELRR 160 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+ + + ++ + + F D+ + +T + L + P+ Sbjct: 161 DLRDKDARYTKLERVGDTLQGVFVDASALNTAKELITRQ----HPDLQLAPQAP----AG 212 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 +S L+ + Q +AI+Q+++ + RI+++G++E IQ+ G R++++LPG QD Sbjct: 213 PYSLSASLTPAAVSQEEDYAIKQNIQTLHNRINELGVAEPIIQQQGRDRVVVELPGIQDV 272 Query: 200 SRLRQLLGTTAKMSFHKVLP-------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252 +R + +LG TA + V + G + D DG + +V+ V ++G Sbjct: 273 ARAKDILGRTASLEVRMVDDSAAAQAALAGQGPLPAGDQIFPDRDGGKLVVKRDVLLTGD 332 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVI 308 +L A FD +T++P V ++ D G+R F +VTR+N+GK A++L R ++TAPVI Sbjct: 333 NLTDAQPGFDQQTNEPAVFLTLDSKGSRIFQQVTRENVGKRTAMILFDRGRGEIITAPVI 392 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 I G+ QISG+ T++ A A +LRAG+L +NI+EER VG LG +I +G ++ Sbjct: 393 RSEIAGGRVQISGHMTVQEANDTALLLRAGALAAPMNIIEERTVGPSLGQQNISQGFHSV 452 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 G V IV+FM + Y +G+V+ + +N++L +A+LS+L ATLTLP IA + L +G+A+ Sbjct: 453 TWGFVAIVIFMSIYYMFFGVVSSIGLAVNLLLLVAVLSMLQATLTLPGIAAMALALGMAI 512 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 DSN+L+NERIREE R S ++ G+ RA++TIFDSN+T LIA V L FG GA+RGF Sbjct: 513 DSNVLINERIREELRNGASPQNAIFHGYERAWATIFDSNVTTLIAGVALLIFGSGAIRGF 572 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 A+ L IL SMF+A+ R ++ K+ Sbjct: 573 AVVHVLGILTSMFSAVFFSRGIINLWYGRKRRLH 606 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 88/208 (42%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G Q + + + I VGP + ++ I +G V +A++ Sbjct: 401 VQISGHMTVQEANDTALLLRAGALAAPMNIIEERTVGPSLGQQNISQGFHSVTWGFVAIV 460 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 I++ I + + F + + L +++ + ++ L +AA+ +G +++ V++ Sbjct: 461 IFMSIYYMF-FGVVSSIGLAVNLLLLVAVLSMLQATLTLPGIAAMALALGMAIDSNVLIN 519 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ S ++ I +++ I+ + + ++G I FA+ Sbjct: 520 ERIREELR---NGASPQNAIFHGYERAWATIFDSNVTTLIAGVALLIFGSGAIRGFAVVH 576 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + S++F + I+ Y + + Sbjct: 577 VLGILTSMFSAVFFSRGIINLWYGRKRR 604 >gi|325290225|ref|YP_004266406.1| protein-export membrane protein SecF [Syntrophobotulus glycolicus DSM 8271] gi|324965626|gb|ADY56405.1| protein-export membrane protein SecF [Syntrophobotulus glycolicus DSM 8271] Length = 330 Score = 216 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 89/296 (30%), Positives = 146/296 (49%), Gaps = 6/296 (2%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 ++ R+ +S+L I I LF GLNYG DF GG L + + V + V Sbjct: 36 HRFYFNIVKRRYLWFALSLLMLIPGIISLFVQGLNYGNDFTGGALLDIKFTQAVTQASVT 95 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 LE + + + Q ++R + +T+ E++ P + E Sbjct: 96 KALEEVGLQGDNVQLSQENTQAIIRTSFLD-----ETKRSELLASIEKNAGPFHKDKIEE 150 Query: 656 IV-GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 GP + EL + + +SA+ MLIYI RF++ +A+ I L+ D+ LG F+LF Sbjct: 151 SQVGPAMGAELRSGAVKALAVSAVLMLIYIAFRFEFVYAVSGIIALLHDVFMVLGIFSLF 210 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 + + VAA+LT+ YS+ND +V+YDRMR+N K SF D++DKS+ +T+ RS+ Sbjct: 211 QWQVDAPFVAAILTVFAYSINDTIVIYDRMRENEKRLRKKDSFADMVDKSLWQTMRRSIC 270 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 T I++L + ++GG F+ M G+ A SSIF+ + +++ I Sbjct: 271 TVATVLIALLCINIFGGESTKVFSRAMLIGVFCGAYSSIFVCSQLVVEIRARLKDK 326 >gi|153873272|ref|ZP_02001909.1| SecD export membrane protein [Beggiatoa sp. PS] gi|152070262|gb|EDN68091.1| SecD export membrane protein [Beggiatoa sp. PS] Length = 609 Score = 216 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 170/520 (32%), Positives = 283/520 (54%), Gaps = 38/520 (7%) Query: 29 QSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85 Q++ P + + LGLDLRGG H +++VD ++ + +ELR+ L+++ Sbjct: 103 QNLAPATPDWLRTLGGQPMYLGLDLRGGVHFLMQVDMQTAIHQDEETLVNELRTLLRQKK 162 Query: 86 IGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142 + S+ + + I +F ++ +V + L D + Sbjct: 163 LRYKSVNRVIDGEGGIVATFTALETRDKAKKQVEKQYNDLLITLENDIDE--------YR 214 Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202 + + ++ + + A+EQ++ +R R++++G+SE IQR G RI++QLPG QD +R Sbjct: 215 LLMTFTEVALQERRQKALEQNITTLRNRVNELGVSEPVIQRQGDERIVVQLPGVQDTARA 274 Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 +++LG TA + F V ++S R + DG+ ++ V +G + A A D Sbjct: 275 KEILGATATLEFRLVADDDSY------GREYKRRDGSPVRLKRGVIATGDQIVDAAATID 328 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 ++ +P + D GAR E TR N+GKP+AVV + +++ + + Sbjct: 329 QRSGRPAAVVRLDNKGARGMLEATRKNVGKPMAVVFIEYHIETKMVDDKPVVTREKTEEV 388 Query: 323 FTIE------------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + A LA +LRAG+L + I+EER VG LG +SI G Sbjct: 389 INVATIQEEFGKNFQITGLASGEANNLALLLRAGALKAPMEIIEERTVGPSLGQESIDLG 448 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 +I+ G V +++FM++ Y +G+VA+ ++ +NVI+ +ALLSLL ATLTLP +AGIVL + Sbjct: 449 MLSIIVGFVAVMVFMLLRYKIFGMVANLALLMNVIILIALLSLLQATLTLPGMAGIVLTL 508 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ E+IREE S S+ +G+ +A+ TIFD+N+T LIA V+LF FG G Sbjct: 509 GMAVDANVLIFEKIREEVANGNSPQASIHIGYEKAFITIFDANLTTLIAAVMLFGFGTGP 568 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 ++GFAIT+ L I+ SMFTAI + R+++ F+ KK+ I Sbjct: 569 IKGFAITLSLGIVTSMFTAIMVTRSVVNFLYGSKKLTKIS 608 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 101/252 (40%), Gaps = 4/252 (1%) Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + V+ + + + + +Q + + Sbjct: 359 PMAVVFIEYHIETKMVDDKPVVTREKTEEVINVATIQEEFGKNFQITGLASGEANNLALL 418 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + + I VGP + +E I G++ +I+ +A+++++ +R+K F + A Sbjct: 419 LRAGALKAPMEIIEERTVGPSLGQESIDLGMLSIIVGFVAVMVFMLLRYKI-FGMVANLA 477 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L++++ + +L L +A ++ +G +V+ V++++++R+ + S + Sbjct: 478 LLMNVIILIALLSLLQATLTLPGMAGIVLTLGMAVDANVLIFEKIREEVA---NGNSPQA 534 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 I + ++ I+ + + +G I FAI ++ GIV + ++I + + Sbjct: 535 SIHIGYEKAFITIFDANLTTLIAAVMLFGFGTGPIKGFAITLSLGIVTSMFTAIMVTRSV 594 Query: 820 LLFIYDWRAKNA 831 + F+Y + Sbjct: 595 VNFLYGSKKLTK 606 >gi|154174926|ref|YP_001408525.1| preprotein translocase subunit SecF [Campylobacter curvus 525.92] gi|112803081|gb|EAU00425.1| protein-export membrane protein SecF [Campylobacter curvus 525.92] Length = 323 Score = 216 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 164/285 (57%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FMR RF V ++ + SI LL T GLNYGIDF GG + + + L +R Sbjct: 10 YDFMRFRFISVVFCLILFVGSIFLLATKGLNYGIDFSGGTLIQLKYDTKAPLDKIREAFA 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 S +I + G + +V G S + + K++ + ++ +IVGP Sbjct: 70 SNEILKNASVTEFGTTDEVVVRFS--GSSSNLGSDIGVTVKELLKDTGNVEVRRVDIVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ ++IS A+LIYI RF+W FAL AI T I DI T+G +LF I+ N Sbjct: 128 KVGDELREKGLMAILISFGAVLIYIAFRFEWRFALAAIATEIHDIIITMGAISLFDIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AA+LT++GYS+ND ++++DR+R+ +K + +I++S++ TL R++ TS Sbjct: 188 LDTLAAILTVLGYSLNDTIIIFDRIREGIKS-SKRTDIEGVINESVSATLSRTILTSATT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 ++VL + ++GG +I F+ + GIV+ SSI+I++P+L++ Sbjct: 247 MMTVLVLFLFGGDMIHGFSFVLIVGIVIGTISSIYISSPLLIWFK 291 >gi|329889962|ref|ZP_08268305.1| protein-export membrane protein SecF [Brevundimonas diminuta ATCC 11568] gi|328845263|gb|EGF94827.1| protein-export membrane protein SecF [Brevundimonas diminuta ATCC 11568] Length = 330 Score = 216 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 173/311 (55%), Gaps = 8/311 (2%) Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + L+P QF++ +S + ++ +I F GLN GIDF+GG + V Sbjct: 2 SMKGWPLIKLLPHKTNFQFVKYAKGFAVLSAILTVAAIIGCFYPGLNLGIDFRGGASMEV 61 Query: 584 LANRPVDLSVVRS-------NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 L + + +L +Q+ I+ ++ + + +++Q D+ QT V++ Sbjct: 62 AKPAGQTLELDKLRGAVSGLDLGDVQVQGIARRDNNLDDGSTAIVRFQVPDNEDQTAVVQ 121 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 V+ I+ V +VG K+S EL+ G++ ++++ + M +YI RF W F +GA Sbjct: 122 KVEGAISAAVGDVAYSGVSVVGSKVSGELLTNGVMALLVAVVLMFLYIAFRFPWQFGIGA 181 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 + L+ D+ T G +EF+L VAA+LT+IGYS+ND VVV+DR+R+N++ Y + Sbjct: 182 VAGLLHDVALTFGLIVALRMEFSLNLVAALLTVIGYSMNDTVVVFDRLRENLRKY-KVMP 240 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 R++ID SINETL R++ T + I ++ +AV+GG + F+I +AFG+V+ SSI++ Sbjct: 241 LREVIDLSINETLSRTIITGLTTVIVLIVLAVFGGEALRGFSITLAFGVVIGTFSSIYVG 300 Query: 817 APILLFIYDWR 827 API+L R Sbjct: 301 APIILLWGVDR 311 >gi|225075074|ref|ZP_03718273.1| hypothetical protein NEIFLAOT_00073 [Neisseria flavescens NRL30031/H210] gi|224953558|gb|EEG34767.1| hypothetical protein NEIFLAOT_00073 [Neisseria flavescens NRL30031/H210] Length = 617 Score = 216 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 166/508 (32%), Positives = 274/508 (53%), Gaps = 28/508 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + Y+ ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYAGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ Q +N +T+ D+ + ++ + I + Sbjct: 164 RTGTVHQAENGLTVPLQDAADVQKALPQLQKMFPEA------------TLLADGNNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ I++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAINKVRSDAVKQNINTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPN--------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + N + + LV +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPIKLQEALNGNVPTGYELLSSGGDRPETILVSKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQVG-APAVSLSLDSAGGSIFGELTSANVGKRMAMVLIDQGKSEVVTAPVIRSAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ L +LS + ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSTNILFLLGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ + Sbjct: 511 NERIREELRGGMPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKMKS 522 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRKLR 598 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 82/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + A+ Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I LG + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSTNILFLLGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRG---GMPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.4 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIAFTIVVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK+ GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDIIENTL 95 >gi|157376025|ref|YP_001474625.1| preprotein translocase subunit SecD [Shewanella sediminis HAW-EB3] gi|157318399|gb|ABV37497.1| protein-export membrane protein SecD [Shewanella sediminis HAW-EB3] Length = 616 Score = 216 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 160/522 (30%), Positives = 268/522 (51%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + V + + R+ L+ E I Sbjct: 104 NLAPATPDWLESLGGSPMKLGLDLRGGVHFLMEVDMGEAVRKMTEAKISDFRTDLRGEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D+ + D + + + Sbjct: 164 RYAGIRNSAKGIEIKFRDAENLAKAERFLKTRGN--------DMVFTDISSGDSYFLMAN 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ + Q+ A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R + +L Sbjct: 216 LSEAYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKDIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + G Q ++ V ++G H+ GA +F Sbjct: 276 GATASIEFHMVDEKADAAAAASGRVSPSSQVYNRRQGGQVVLHKAVMLTGDHIQGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 D + +P V I+ D G F VT+DNIGKP+A + + Sbjct: 336 DEYS-RPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGDKNPDGSVKMQKIEEV 394 Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 A LA +LRAG+L + IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVITGLEHSEAQNLALLLRAGALIAPVTIVEERTIGPSLGAENIQNG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+ ++++FM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 VQAMIWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFTAI R+++ + K++K + I Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRSIVNAMWGGKRVKKLSI 616 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 91/234 (38%), Gaps = 6/234 (2%) Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 S+++ I + + + + ++ TI +G Sbjct: 384 GSVKMQKIEEVISVATIQARLGRNFVITGLEHSEAQNLALLLRAGALIAPVTIVEERTIG 443 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIE 717 P + E I+ G+ +I +LI++ + ++ F L A L ++ +G ++ G Sbjct: 444 PSLGAENIQNGVQAMIWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGVMSMIPGAV 502 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ S + I + ++ Sbjct: 503 LTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHEGYGNAFSTIADANI 559 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 F++ L + G + FA+ + GI + ++I I+ R K Sbjct: 560 TTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAMWGGKRVKK 613 >gi|332704177|ref|ZP_08424265.1| protein-export membrane protein SecD [Desulfovibrio africanus str. Walvis Bay] gi|332554326|gb|EGJ51370.1| protein-export membrane protein SecD [Desulfovibrio africanus str. Walvis Bay] Length = 532 Score = 216 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 185/537 (34%), Positives = 295/537 (54%), Gaps = 24/537 (4%) Query: 1 MRNN-PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ + W + L + IGL+ +P+ ++ S +P +RISLGLDL+GG HL L+ Sbjct: 1 MKGSLRWRLALSLIAAIIGLVYMMPSI--PAVDRAIGSFLPNDRISLGLDLKGGIHLTLD 58 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLF 118 V+ + L ++R + + + V + K+ L+ S +E+ + Sbjct: 59 VNVRKALENSLSQSGRDIRDLARDKDLAVIKPQVIAGAKLRLALVKSGQQESFESLLKQS 118 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 +G+ + + + E + ++ + + ++Q+++ IR RIDQ G++E Sbjct: 119 FEGLRIESKEPGEDGRI------EYVLAPTEEYRNYFTNLTVDQAVKTIRNRIDQFGVAE 172 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233 I++ RI +QLPG QDP R ++G TA + F V + S + GV Sbjct: 173 PDIRKQQGGRIQVQLPGLQDPERAIAIIGKTAHLEFKIVDDSMSPQQAASGVLPPGRELA 232 Query: 234 --------RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 + +++ ++G + A +FD +P V ++F+ GAR F + Sbjct: 233 TMRRTSADGGTVETSVVLQRDAVLTGEAITDANVSFDQFG-QPYVGLTFNARGARDFERI 291 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 T +N+ K +A+VLDG V + PVI + I G+A ISG+FT A LA +LRAGSLP + Sbjct: 292 TGENVRKQMAIVLDGVVYSTPVIQEKISGGRASISGSFTEAEAHDLAVVLRAGSLPAPVT 351 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 ++E+R VG LG +SI +G A + GLV+++ FM++ YG G+VAD + N++L +A L Sbjct: 352 VIEQRVVGPSLGQESIDQGLRAGIIGLVVVMAFMVLYYGLAGIVADLVLLFNLVLIMAGL 411 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 + GATLTLP IAGI+L IG+AVD+N+L+ ERIREE R + ++ GFSRA TI D Sbjct: 412 AAFGATLTLPGIAGIILTIGMAVDANVLIYERIREELRNGVTPRAAIAEGFSRATLTILD 471 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +N+T +IA V+L+ FG G +RGFA+T+ L IL SMFTAI + R + +K Sbjct: 472 ANVTTVIAAVILYEFGTGPIRGFAVTLILGILSSMFTAIFVSRVIFDLYTSGRKELR 528 Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 106/242 (43%), Gaps = 5/242 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + VR + + G + EK R + A+ L +V + + Sbjct: 289 ERITGENVRKQMAIVLDGVVYSTPVIQEKISGGRASISGSFTEAEAHDLAVVLRAGSLPA 348 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 P++ I+ +VGP + +E I +G+ II + ++ ++ + + + A L+ ++ Sbjct: 349 PVTVIEQR-VVGPSLGQESIDQGLRAGIIGLVVVMAFMVLYYGL-AGIVADLVLLFNLVL 406 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 + A FG L +A ++ IG +V+ V++Y+R+R+ ++ ++ R I + + Sbjct: 407 IMAGLAAFGATLTLPGIAGIILTIGMAVDANVLIYERIREELR---NGVTPRAAIAEGFS 463 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + ++ I+ + + +G I FA+ + GI+ + ++IF++ I Sbjct: 464 RATLTILDANVTTVIAAVILYEFGTGPIRGFAVTLILGILSSMFTAIFVSRVIFDLYTSG 523 Query: 827 RA 828 R Sbjct: 524 RK 525 >gi|225873734|ref|YP_002755193.1| protein-export membrane protein SecF [Acidobacterium capsulatum ATCC 51196] gi|225793946|gb|ACO34036.1| protein-export membrane protein SecF [Acidobacterium capsulatum ATCC 51196] Length = 401 Score = 216 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 71/185 (38%), Positives = 118/185 (63%), Gaps = 1/185 (0%) Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 ++N EIVGP++ +L + ++ V+ S MLIY+W RF+ + + A+ + D Sbjct: 205 SGFAVRNVEIVGPQVGAQLRHQALMAVLYSLAGMLIYLWFRFELIYGVAAVVAVFHDTII 264 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T+G F+L +E +LT +AA+LTLIGYS+ND +VV+DR+R+N++ + D++++SIN Sbjct: 265 TIGAFSLRDMEMSLTVIAAILTLIGYSMNDTIVVFDRIRENLR-MSRREPLADVVNRSIN 323 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +TL R+V TS F++ L + +GG V+ F+ + GI + SSI +AAP+L+ +W Sbjct: 324 QTLSRTVLTSGLTFLTALSLFFFGGEVLHPFSFALVVGIAIGTYSSIAVAAPMLVAYQNW 383 Query: 827 RAKNA 831 RAK Sbjct: 384 RAKRG 388 >gi|319637695|ref|ZP_07992461.1| protein-export membrane protein SecD [Neisseria mucosa C102] gi|317400850|gb|EFV81505.1| protein-export membrane protein SecD [Neisseria mucosa C102] Length = 617 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 166/506 (32%), Positives = 275/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ Q +N +T+ D+ + ++ L I + Sbjct: 164 RTGTVHQTENGLTVPLQDAADVQKALPQLQKLFPEAT-LLPDG-----------NNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ I++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAINKVRSDAVKQNINTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPN--------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + N + + LV +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPIKLQEALNGNVPTGYELLSSGGDHPETILVNKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTSANVGKRMAMVLIDQGKSEVVTAPVIRAAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM++ Y G + ++ N++ + +LS + ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VAAFMVIYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R + ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ + Sbjct: 511 NERIREELRAGVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 155 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 83/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + A+ Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ I ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVIYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ ++ + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.1 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIAFTIVVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 ++ + LK+ GI M + N + + F D+ + D + L Sbjct: 47 ---------DQTQSKVDAALKQAGIQTDGMFIVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|152996657|ref|YP_001341492.1| protein-export membrane protein SecF [Marinomonas sp. MWYL1] gi|150837581|gb|ABR71557.1| protein-export membrane protein SecF [Marinomonas sp. MWYL1] Length = 304 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 95/294 (32%), Positives = 163/294 (55%), Gaps = 5/294 (1%) Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 I FM R S+ + S+ L T GL +G+DF GG + V L V Sbjct: 1 MKVTNIPFMAMRKIVAVFSLTLILISLVSLATKGLQFGLDFTGGTLIEVAYKEAPQLDDV 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R+ L D+ QNF + +VR+ ++ E++ ++Q + Sbjct: 61 RTLLGENGYSDVVVQNFGSPTDVVVRMANSYTATLGD----EVLATLQNHGATDVSLQRS 116 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 E VG ++ EL +G +G++++ ++IY+ +RF++ F++ ++ LI D+ TLGFF++F Sbjct: 117 EFVGAQVGEELREQGGLGMLLALAIVMIYVAVRFQFKFSVASVAALIHDVIITLGFFSIF 176 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 +EF+LT +AA+L ++GYS+ND +VV DR+R+N ++ + DL++ SIN+TLGR++ Sbjct: 177 EVEFDLTVLAALLAVVGYSLNDTIVVCDRIRENFRIM-RDTTPYDLVNDSINQTLGRTLI 235 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 TS+ ++ + GG I +FA+ + GIV+ SSIF+AA +LL + R Sbjct: 236 TSLTTLFVLVVLFFSGGEAIHNFAMALLVGIVIGTYSSIFVAANLLLAMGVKRE 289 >gi|206578988|ref|YP_002240125.1| protein-export membrane protein SecD [Klebsiella pneumoniae 342] gi|290510070|ref|ZP_06549440.1| preprotein translocase SecD subunit [Klebsiella sp. 1_1_55] gi|206568046|gb|ACI09822.1| protein-export membrane protein SecD [Klebsiella pneumoniae 342] gi|289776786|gb|EFD84784.1| preprotein translocase SecD subunit [Klebsiella sp. 1_1_55] Length = 615 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 172/539 (31%), Positives = 298/539 (55%), Gaps = 40/539 (7%) Query: 13 MICCIG-LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 ++ +G + N P + + +A+ + LGLDLRGG H ++EVD D + + Sbjct: 91 LLTVLGDKYVVALNLAPATPR--WLAALYAEPMKLGLDLRGGVHFLMEVDMDTALGKLQE 148 Query: 72 MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 D LRS L+ +GI ++R+ N +++ F DS ++ S L+ Sbjct: 149 QNIDSLRSELRDKGIPYATVRKEDNYGLSIVFRDSAARDQAI-----------SYLSPRH 197 Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 + ++ + + + V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+ Sbjct: 198 RDLVISSQGDNSLKAVMTDERLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIV 257 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVED 245 ++LPG QD +R +++LG TA + F V N + G +G ++ Sbjct: 258 VELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDSEVKETREGQPVVLYK 317 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV--- 302 +V ++G H+ +T++ + ++P V+IS D G T+DNIGKP+A + Sbjct: 318 RVILTGDHITDSTSS-MDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSG 376 Query: 303 ---------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 + Q+ +I+G A L+ +LRAG+L + IV Sbjct: 377 KKDANGRAILAKEEEVINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIV 436 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER +G LG +I +G A +AGLV+ +LFMI+ Y K+GL+A ++ N++L + ++SL Sbjct: 437 EERTIGPTLGMQNIKQGLEACLAGLVVSILFMILFYKKFGLIATSALIANLVLIVGIMSL 496 Query: 408 LG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 + ATLT+P IAGIVL + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+ Sbjct: 497 IPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDA 556 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T LI ++L+ G GA++GFAIT G+ I SMFTAI RA++ + K++K + I Sbjct: 557 NVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ + +K F L A + LI ++ +G +L Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMILFYK-KFGLIATSALIANLVLIVGIMSLIP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI GI + ++I I+ +Y + Sbjct: 556 ANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKK 612 >gi|326387925|ref|ZP_08209531.1| protein translocase subunit secF [Novosphingobium nitrogenifigens DSM 19370] gi|326207971|gb|EGD58782.1| protein translocase subunit secF [Novosphingobium nitrogenifigens DSM 19370] Length = 322 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 170/302 (56%), Gaps = 6/302 (1%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L+PD I F++ R +S++ S L+ T GLN G+DF GG + V R Sbjct: 1 MKLLKLVPDHTNIHFLKWRVPFYLVSMVLVAASWGLVLTKGLNLGVDFIGGQMIRVTFER 60 Query: 588 PVD--LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG---DSVAQTRVLEMVKKKI 642 + + +R + L G+ Q F +R++ G D R+ + I Sbjct: 61 SAEAPVGPLRDEVTKLGYGEPILQRFGKPNEVSIRMKLPEGAEHDPALADRMARTITADI 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + + V K+S+EL + +A+A+ YIW+RF+W F +GA+ +L+ Sbjct: 121 RKNHADARVDGVDSVSGKVSKELGWDAFRALGFAALAVAAYIWVRFEWQFGIGALLSLVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D++ TLG FA+ +EF+L VAA+LTLIGYS+ND +VVYDR+R+N+K Y + +L+D Sbjct: 181 DVSLTLGMFAVTQLEFDLNIVAALLTLIGYSLNDTIVVYDRIRENLKKY-RRMPLPELLD 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 S+NETL R++ TS++ I+++ + V+G VI F + GI + SSI++AAPIL++ Sbjct: 240 LSVNETLARTIVTSLSMLITLVSLLVFGPQVIFGFTAAITLGIFIGTYSSIYMAAPILIW 299 Query: 823 IY 824 + Sbjct: 300 LK 301 >gi|83858675|ref|ZP_00952197.1| SecD/SecF/SecDF export membrane protein [Oceanicaulis alexandrii HTCC2633] gi|83853498|gb|EAP91350.1| SecD/SecF/SecDF export membrane protein [Oceanicaulis alexandrii HTCC2633] Length = 544 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 191/540 (35%), Positives = 306/540 (56%), Gaps = 20/540 (3%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSM-------LDRFPSAMPKNRISLGLDLRGGSHLV 57 PW + +++ IGLL LPNF+P+++ + +P I+LGLDLRGGSHLV Sbjct: 6 PWKTTVVTLVILIGLLFTLPNFVPENVRLDANGEPKGVFTVLPHQTINLGLDLRGGSHLV 65 Query: 58 LEVDEDDFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKV 115 +VD D+ L+ D+ RS L+++ + S ++ ++ + + + +++ Sbjct: 66 FQVDMDEVRQERLENLQDDARSALRQDPPILLSGSPAVVEGQVLVRLSRPEDMDRAMERL 125 Query: 116 TLFLQGVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172 + + + + ++ I + +++ +D + + QS+E+IR+R+D Sbjct: 126 EELSEPITTATGAQGLNQTLAITRGDDDRTIRMAITEAALDSIRQRTVTQSIEVIRRRVD 185 Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG--- 229 G +E I R G R+L+Q+PGE DP R+ ++GTTA+++FH V + G Sbjct: 186 STGTTEPNIARQGEDRVLVQVPGENDPQRIIDIVGTTARLTFHMVEEGVTINPDGTGRTP 245 Query: 230 ----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 + S V+ + ++G L A FD +P V+ F+ GAR F + Sbjct: 246 PGVMILPSERSSEPFLAVQRRPLVTGEQLVNAGQAFDQNG-QPAVNFRFNTTGARAFADA 304 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 T N G+ A+VLD +++APVI I G I G FT+++A LA ML AG+LP +L Sbjct: 305 TTQNRGRRFAIVLDDTIISAPVIRNPITGGSGIIEGGFTMQSATDLANMLNAGALPARLT 364 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 VE+R V A LG+DS+ +G A++ G L+++FM + YG +G+V+ ++ N++L L L Sbjct: 365 PVEQRTVTASLGADSVARGETAVLIGFGLVIVFMALAYGFFGIVSTLALLANILLLLGAL 424 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 S L ATLTLP IAGIVL IG+AVD+N+L+ ER+REE R ++V + + G+SRA S I D Sbjct: 425 SGLQATLTLPGIAGIVLTIGMAVDANVLIFERVREEYRLGRTVTTAFEAGYSRALSAILD 484 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +NIT LIA VL+ G G VRGFA+T+GL IL S+FTA R ++ +R + K++ + Sbjct: 485 ANITTLIAAAVLYMLGAGPVRGFAVTLGLGILTSVFTAFVFSRLLISIWLRTSRPKTLAM 544 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 81/175 (46%), Gaps = 5/175 (2%) Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 + + + +G V+I +++++ + + + F + + L+ +I LG + Sbjct: 373 ASLGADSVARGETAVLIGFGLVIVFMALAYGF-FGIVSTLALLANILLLLGALSGLQATL 431 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 L +A ++ IG +V+ V++++R+R+ +L + + + L + ++ Sbjct: 432 TLPGIAGIVLTIGMAVDANVLIFERVREEYRL---GRTVTTAFEAGYSRALSAILDANIT 488 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + + G + FA+ + GI+ + ++ F+ + +L+ I+ ++ + Sbjct: 489 TLIAAAVLYMLGAGPVRGFAVTLGLGILTSVFTA-FVFSRLLISIWLRTSRPKTL 542 >gi|212709162|ref|ZP_03317290.1| hypothetical protein PROVALCAL_00195 [Providencia alcalifaciens DSM 30120] gi|212688074|gb|EEB47602.1| hypothetical protein PROVALCAL_00195 [Providencia alcalifaciens DSM 30120] Length = 604 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 161/518 (31%), Positives = 276/518 (53%), Gaps = 37/518 (7%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 ++ A+ + LGLDLRGG H ++EVD D + + D LR+ L++ GI S+R Sbjct: 99 PKWLEALGGEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNMDGLRNDLRQAGIAYSSIR 158 Query: 93 QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + + + + F ++ + + + ++ + V++ Sbjct: 159 KGSDYSVEVRFRNADDRSLAEKTLARKY-----------PDLVFSDGSDNTMIAVMTDER 207 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + + ++A+ Q++ IIR R++Q+G++E +QR G+ RI+++LPG QD +R +++LG TA Sbjct: 208 LREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATAT 267 Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V + G D +G Y++ +V ++G H+ +T+ D + Sbjct: 268 LEFRLVNTSVDSSAAESGRIPGDSELKSDRNGVPYVLYKRVVLTGDHITDSTSETDENGY 327 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------------VLTAPVI 308 V IS D G + TRDN K +A + + Sbjct: 328 PQ-VSISLDSAGGSIMSDFTRDNQDKLMATLFVEYKDSGKKDAAGRAILVKDEKVINAAR 386 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 QA K +I+G A L+ +LRAG+L + IVEER +G LG +I +G A Sbjct: 387 IQARFGSKFRITGIDNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLKAC 446 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 +AGL+ +LFMI+ Y K+GL+A ++ N+++ + ++SLL ATLT+P IAGIVL + +A Sbjct: 447 IAGLLASILFMIIYYRKFGLIASSALMANLVMIVGIMSLLPGATLTMPGIAGIVLTLAVA 506 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI ++L+ G G+++G Sbjct: 507 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSITDANLTTLITAIILYAVGTGSIKG 566 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 FAIT + + SMFTAI RA++ + K++ + I Sbjct: 567 FAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 85/205 (41%), Gaps = 5/205 (2%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + + ++ I +GP + + I +G+ I +A ++++ I Sbjct: 401 DNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLKACIAGLLASILFMIIY 460 Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F L A + L+ ++ +G +L G + +A ++ + +V+ V++ +R+++ Sbjct: 461 YR-KFGLIASSALMANLVMIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE 519 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++ S + I + ++ I+ + + G I FAI A G+ Sbjct: 520 ELR---NGRSVQQAIHEGYKGAFSSITDANLTTLITAIILYAVGTGSIKGFAITTAIGVA 576 Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831 + ++I I+ +Y + N Sbjct: 577 TSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|332531794|ref|ZP_08407679.1| protein-export membrane protein SecF [Pseudoalteromonas haloplanktis ANT/505] gi|332038770|gb|EGI75212.1| protein-export membrane protein SecF [Pseudoalteromonas haloplanktis ANT/505] Length = 315 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 162/291 (55%), Gaps = 2/291 (0%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 ++FM R +G S L + S +F GLN+G+DF GG + V ++P DL VR Sbjct: 9 RTLRFMSLRKVAMGFSTLLILASFASIFIKGLNFGLDFTGGTAVEVGFSQPADLKKVRDA 68 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L D S Q F + LVRL + D A+ + V + + ++ E V Sbjct: 69 LADNGFADASVQLFGSSQEILVRLAPRGSDVKAEV-IGNQVIDALKKADDSVVMRRIEFV 127 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + +L +G + ++ + I +LIY+ RF+W FA+GA+ L+ D+ T+G F++ G+E Sbjct: 128 GPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITVGLFSVLGLE 187 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AA+L +IGYS+ND +VV DR+R+N + ++ID S+ +TL R++ TS+ Sbjct: 188 FDLTILAAILAVIGYSLNDTIVVSDRIRENFRK-VRIDDTIEIIDISLTQTLNRTLVTSI 246 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + WGG I FA + FG+ + SSI++A+ + + + + Sbjct: 247 TTILVLIALFAWGGQTIHGFATALLFGVFIGTYSSIYVASSVAIAMGVSKE 297 >gi|261377973|ref|ZP_05982546.1| protein-export membrane protein SecD [Neisseria cinerea ATCC 14685] gi|269145837|gb|EEZ72255.1| protein-export membrane protein SecD [Neisseria cinerea ATCC 14685] Length = 617 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 164/506 (32%), Positives = 274/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQTENSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSEGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + K L+ +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPVKLREASEGNVPAGYELLSSGGDHPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRAAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM++ Y G + ++ N++ + +LS + ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VAAFMVIYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ + Sbjct: 511 NERIREELRAGVVPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 154 bits (387), Expect = 8e-35, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 82/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + A+ Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ I ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVIYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVVPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.4 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + I + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIAFTIVIAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 ++ + LK+ GI M + N + + F D+ + D + L Sbjct: 47 ---------DQTQSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDIIENTL 95 >gi|254469323|ref|ZP_05082728.1| protein-export membrane protein SecF [Pseudovibrio sp. JE062] gi|211961158|gb|EEA96353.1| protein-export membrane protein SecF [Pseudovibrio sp. JE062] Length = 313 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 121/300 (40%), Positives = 181/300 (60%), Gaps = 5/300 (1%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L+P+ +FM R S + ++ SI L T GLNYGIDFKGG + + + Sbjct: 1 MKLLRLVPEQTNFRFMHWRVLSFPFSGITAVLSIVLFLTVGLNYGIDFKGGTLIELQSTN 60 Query: 588 -PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 P +LS +R L L +GD+ Q F L+R++ Q AQ V+E V+ T+ Sbjct: 61 GPANLSEIRRTLGGLNLGDVQVQEFGSPTEVLIRIESQGEGESAQQDVVENVRSAFTDGY 120 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 + TE+VGP++S EL G + V + + ++ YIW RF+W FA+GAI T DI Sbjct: 121 EF---RRTEVVGPRVSGELAYAGTLAVGSALLMIMFYIWFRFEWQFAVGAIITTFNDILL 177 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T+G FA+ ++F L+++AAVLT+IGYS+ND VVVYDR+R+N++ Y +S +L+DKSIN Sbjct: 178 TVGLFAILQLDFTLSSIAAVLTIIGYSLNDTVVVYDRIRENLRRY-KRLSLEELLDKSIN 236 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 ETL R+ TS+ +++ + GG VI SF + M FGIV+ SSIF+A+P+L+ + Sbjct: 237 ETLSRTTMTSVTTLLALFALYFLGGEVIQSFVLAMIFGIVIGTYSSIFLASPLLMLMKLR 296 >gi|238893344|ref|YP_002918078.1| preprotein translocase subunit SecD [Klebsiella pneumoniae NTUH-K2044] gi|238545660|dbj|BAH62011.1| preprotein translocase SecD subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 615 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 170/524 (32%), Positives = 291/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+ +GI Sbjct: 104 NLAPATPRWLAALYAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSELRDKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N +++ F DS ++ S L+ + ++ + + + Sbjct: 164 PYATVRKEDNYGLSIVFRDSAARDQAI-----------SYLSPRHRDLVISSQGDNRLKA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMTDERLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -MDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILAKEEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI+ Y K+GL+A ++ N+IL + ++SL+ ATLT+P IAGIV Sbjct: 452 QGLEACLAGLVVSILFMILFYKKFGLIATSALIANLILIVGIMSLIPGATLTMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+N+T LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ I SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ + +K F L A + LI ++ +G +L Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMILFYK-KFGLIATSALIANLILIVGIMSLIP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI GI + ++I I+ +Y + Sbjct: 556 ANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKK 612 >gi|261379739|ref|ZP_05984312.1| protein-export membrane protein SecD [Neisseria subflava NJ9703] gi|284797415|gb|EFC52762.1| protein-export membrane protein SecD [Neisseria subflava NJ9703] Length = 617 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 166/506 (32%), Positives = 274/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ Q +N +T+ D+ + ++ L I + Sbjct: 164 RTGTVHQTENGLTVPLQDAADVQKALPQLQKLFPEAT-LLPDG-----------NNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ I++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAINKVRSDAVKQNINTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPN--------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + N + + LV +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPIKLQEALNGNVPTGYELLSSGGDHPETILVNKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTSANVGKRMAMVLIDQGKSEVVTAPVIRAAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM++ Y G + ++ N++ + +LS + ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VAAFMVIYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ + Sbjct: 511 NERIREELRAGVVPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 154 bits (387), Expect = 7e-35, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 82/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + A+ Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ I ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVIYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVVPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.4 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIAFTIVVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK+ GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALKQAGIQTDGMFIVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|221133852|ref|ZP_03560157.1| preprotein translocase subunit SecD [Glaciecola sp. HTCC2999] Length = 614 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 163/530 (30%), Positives = 289/530 (54%), Gaps = 38/530 (7%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 N P + ++ +A+ + + LGLDLRGG H ++EVD + + + + R+ Sbjct: 99 YFVAMNLAPDTP--QWLAALGGSPMKLGLDLRGGVHFLMEVDMNSAIGKATEDMVGDFRT 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L++E I S++Q+ + + + F D ++ + + Sbjct: 157 ALREENIRYRSVKQVGDAVNIQFRDQDTLDSARFFLRNR-----------NPDLVFTERD 205 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 I S+N + Q+ +A++Q++ IIR R++Q+G++E +Q+ G+ RI++QLPG QD Sbjct: 206 GLIIRATFSENRLVQIRDYAVKQNITIIRNRVNQLGVAEPLVQKQGAERIVVQLPGIQDT 265 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHL 254 ++ +++L TA + F V +N + + G + D G L++ +V ++G H+ Sbjct: 266 AKAKEILNATATLEFRMVDQDNDVRDAVNGRIPPSSILVNDRSGIPQLLKKRVMLTGNHI 325 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------ 302 + + P V+IS D G + + T+DNIG P+A V Sbjct: 326 ID-ANSGADEYGIPQVNISLDSKGGTKMSQGTKDNIGNPMATVFIEYKATGERDSNDKLI 384 Query: 303 ------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + QA +I+G + + A LA +LRAG+L + IVEER VG L Sbjct: 385 FEKKEEVISIATIQARLGSNFRITGLDSPKEARDLALLLRAGALIAPITIVEERTVGPSL 444 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415 G+++I G AI GL+L+++FM++ Y +G+VA+ ++ N+++ + ++S++ ATLTLP Sbjct: 445 GAENIELGMKAIQGGLILVLIFMLIYYKAFGMVANIALIANLVMIVGVMSMIPGATLTLP 504 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 +AGIVL +G+AVD+N+L+ ERIREE R +S ++ G+ A+STI D+NIT +A + Sbjct: 505 GMAGIVLTVGMAVDANVLIFERIREELRDGRSPQQAIHHGYDSAFSTILDANITTFLAGL 564 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +LF G G ++GF+IT+ + I SMFTAI + R ++ I ++++S+ I Sbjct: 565 ILFAVGTGPIKGFSITLMIGIATSMFTAIVLTRVLVNLIWGGRRLESLSI 614 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 101/261 (38%), Gaps = 6/261 (2%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 ++ G G + + SN + + + + L G Sbjct: 352 MSQGTKDNIGNPMATVFIEYKATGERDSNDKLIFEKKEEVISIATIQARLGSNFRITGLD 411 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + ++ TI VGP + E I G+ + I +LI++ I + Sbjct: 412 SPKEARDLALLLRAGALIAPITIVEERTVGPSLGAENIELGMKAIQGGLILVLIFMLIYY 471 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 K F + A LI ++ +G ++ G L +A ++ +G +V+ V++++R+R+ Sbjct: 472 K-AFGMVANIALIANLVMIVGVMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIREE 530 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 ++ S + I + + ++ F++ L + G I F+I + GI Sbjct: 531 LRD---GRSPQQAIHHGYDSAFSTILDANITTFLAGLILFAVGTGPIKGFSITLMIGIAT 587 Query: 808 AASSSIFIAAPIL-LFIYDWR 827 + ++I + ++ L R Sbjct: 588 SMFTAIVLTRVLVNLIWGGRR 608 >gi|89902625|ref|YP_525096.1| preprotein translocase subunit SecD [Rhodoferax ferrireducens T118] gi|89347362|gb|ABD71565.1| protein-export membrane protein SecD [Rhodoferax ferrireducens T118] Length = 626 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 164/514 (31%), Positives = 278/514 (54%), Gaps = 21/514 (4%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 I N L +S + +A+ + LGLDLRGG H +L+VD + + + ++R+ Sbjct: 104 YIVALNLLSRSPT--WLTALRAFPMYLGLDLRGGVHFMLQVDMQAALTKKAESLTGDIRT 161 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+++ + + + I + F D++ E + + D + + T Sbjct: 162 SLREKNVRHSGINRNGQTIEVRFRDAQTLEAAKEILLDQF--------ADLQSVDALDGT 213 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + +++ + +V + A++Q++ + RI+++G+SE IQ+ G RI+++LPG QD Sbjct: 214 DYKLTASIKPVAALRVQTQALKQNITTLHNRINELGVSEPVIQQQGLDRIVVELPGVQDT 273 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD-------GNQYLVEDKVEISGI 252 ++ + +LG TA + V ++ + G + G +V+ +V ++G Sbjct: 274 AKAKDILGRTATLEVRMVDESSEARAAEGGTAAVPFGSERFLERSGQPVIVKKQVILTGE 333 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308 +L A FD +T + VV+++ D GAR F +VTR+++GK + G V+TAPVI Sbjct: 334 NLTDAQPGFDSQTQEAVVNLTLDAKGARIFRDVTRESVGKRMAILLFEKGKGEVVTAPVI 393 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 I G+ QISG T A A +LRAGSL + I+EE +G LG+++I KG ++ Sbjct: 394 RSEIGGGRVQISGRMTAMEATDTALLLRAGSLAAPMEIIEETTIGPSLGAENIAKGFNSV 453 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 G + +FM V Y +GL + S+ +N++L +A+LS+L ATLTLP +A + L IG+A+ Sbjct: 454 TYGFAAVTVFMCVYYVLFGLFSSISLAVNLLLLVAVLSMLQATLTLPGMAAMALVIGMAI 513 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 D+N+L+NER+REE R S ++ G+ RA++TI DSN+T LI + L FG G VRGF Sbjct: 514 DANVLINERVREELRNGASAQAAIHAGYDRAWATILDSNVTTLIVGLALLTFGSGPVRGF 573 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 A+ L IL SMF+ + R ++ + Sbjct: 574 AVVHVLGILTSMFSGVFFSRGLVNLWYGRQNKLK 607 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G A + + + I +GP + E I KG V A+ Sbjct: 402 VQISGRMTAMEATDTALLLRAGSLAAPMEIIEETTIGPSLGAENIAKGFNSVTYGFAAVT 461 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + + F L + +L +++ + ++ L +AA+ +IG +++ V++ Sbjct: 462 VFMCVYY-VLFGLFSSISLAVNLLLLVAVLSMLQATLTLPGMAAMALVIGMAIDANVLIN 520 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ S + I + + +++ I L + +G + FA+ Sbjct: 521 ERVREELR---NGASAQAAIHAGYDRAWATILDSNVTTLIVGLALLTFGSGPVRGFAVVH 577 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S +F + ++ Y + K + Sbjct: 578 VLGILTSMFSGVFFSRGLVNLWYGRQNKLKTV 609 Score = 42.0 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + +G++ LPNF ++ + S + + V Sbjct: 3 RYPVWKYVIILIALVVGVVYTLPNFFGEAPAVQV------------------SAVKVGVK 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D ++ G+ + N + F ++ + D + L Sbjct: 45 VDSSTKVQVEAVLQTA-------GLAADVVTLDGNSVKARFGNTETQLKAKDAIQKAL 95 >gi|310658613|ref|YP_003936334.1| secyeg protein translocase auxillary subunit [Clostridium sticklandii DSM 519] gi|308825391|emb|CBH21429.1| SecYEG protein translocase auxillary subunit [Clostridium sticklandii] Length = 287 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 157/288 (54%), Gaps = 4/288 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 + ++ + +S++ I + L G N GIDF GG + + V+ + +R + Sbjct: 1 MNIIKNKKIWFSLSLIVIIVGMLLGMIRGYNLGIDFTGGTLIEIQMKDYVESTEIRE-IT 59 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + + + K+ + + ++ A+ + ++ K+K + + + +E GP Sbjct: 60 DEIDKNATINHIGETKDIIQIRTTENLNNEARMELFKLFKEKYS--LEENQPLRSEQFGP 117 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 I +E+ K ++ VII+ I MLIYI RF+ + L AI L+ D+ L +A+F I N Sbjct: 118 AIGKEIQNKAMLSVIIATIGMLIYITFRFQLSYGLSAILALVHDVLFVLSVYAIFRIPLN 177 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 VAA+LT++GYS+ND +VV+DR+R+NM + ++ ++ + SI +T+ RS+ TS+ Sbjct: 178 SPFVAAMLTVVGYSINDTIVVFDRIRENM-KHAKKNAYEEVAELSIRQTVSRSINTSLTT 236 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++++ + V+G I F +P+ GI++ SSIFIA+PI + I + Sbjct: 237 LLAIVALYVFGVESIREFTLPLLTGIMIGTYSSIFIASPIWVLIKSKK 284 >gi|238787976|ref|ZP_04631772.1| Protein-export membrane protein secD [Yersinia frederiksenii ATCC 33641] gi|238723924|gb|EEQ15568.1| Protein-export membrane protein secD [Yersinia frederiksenii ATCC 33641] Length = 600 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 160/537 (29%), Positives = 290/537 (54%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P++L + + + LGLDLRGG H ++EVD D + + Sbjct: 85 VIALNLAPATPSWLARLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 135 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LR+ L+++ I ++R++ N + + F D + +++ ++ + Sbjct: 136 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKTRDDAVSYLSSRHR-----------D 184 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + + V+S + + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 185 LVIGSNGSNSLKAVMSDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 244 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 245 LPGIQDTARAKEILGATATLEFRLVNSNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 304 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 305 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSLMSNFTKDNIGKPMATLFVEYKDSGKK 363 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 364 DANGRAILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 423 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM++ Y K+G++A ++ N++L + ++SLL Sbjct: 424 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVIYYRKFGVIASTALLANLVLIVGVMSLLP 483 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE + +++ ++ G+ A+S+I D+N+ Sbjct: 484 GATLTMPGIAGIVLTLAIAVDANVLINERIKEEYKNGRTIQQAIHEGYKGAFSSIVDANV 543 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 544 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 600 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ I ++ F + A T L+ ++ +G +L Sbjct: 425 TIGPTLGSQNIAQGLEACLWGLAVSILFMVIYYR-KFGVIASTALLANLVLIVGVMSLLP 483 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 484 GATLTMPGIAGIVLTLAIAVDANVLINERIKEE---YKNGRTIQQAIHEGYKGAFSSIVD 540 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 541 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 597 >gi|237730383|ref|ZP_04560864.1| preprotein translocase subunit SecD [Citrobacter sp. 30_2] gi|5834382|gb|AAD53945.1| general protein secretion pathway subunit SecD [Citrobacter freundii] gi|226905922|gb|EEH91840.1| preprotein translocase subunit SecD [Citrobacter sp. 30_2] Length = 615 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 168/524 (32%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D ++ + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F DS ++ ++ Q ++ + + Sbjct: 164 PYTTVRKEDNYGLSITFRDSSARDEAISYLSKRHQ-----------DLVISSQGSNALRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQSREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALIANLVLIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE +SV +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRSVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + LI ++ +G +L Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALIANLVLIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + S + I++ Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAINEGYAGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612 >gi|88858509|ref|ZP_01133151.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Pseudoalteromonas tunicata D2] gi|88820126|gb|EAR29939.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Pseudoalteromonas tunicata D2] Length = 608 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 274/523 (52%), Gaps = 40/523 (7%) Query: 33 DRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89 P + + + LGLDL GG H +EVD + L+ + RS L+++ I Sbjct: 96 PSTPQWLKSLGGSPMKLGLDLSGGVHFTMEVDMKTAIENSLEQMDQDFRSDLREQKIRYK 155 Query: 90 SMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147 ++R+ ++I + D K+ + + + + + E + + Sbjct: 156 TVRRVAGADEIQILLRDQETKDQAERFLKDRYRDLL---------FVDDRSNEFGLVASM 206 Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 ++ + +AI+Q+ IIR R++QIG++E +QR G+ RI++QLPG QD +R +++LG Sbjct: 207 TEQKLKATRDYAIKQNETIIRNRVNQIGVAEPNVQRQGAERIIVQLPGIQDTARAKEILG 266 Query: 208 TTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 TA + F +V + + G + G L++ + ++G H+ G + + Sbjct: 267 ATATLEFREVDESADVRDAVAGRVPPGSEIIMARQGYPVLLKKNLILAGSHITG-AQSGN 325 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV--------------- 307 + +P V+IS D G + T++ IGK +A V + V Sbjct: 326 DEYQRPQVNISLDSKGGSKMAAYTKNAIGKRMATVFTEYKPSGKVDENGKALPPIKVEEV 385 Query: 308 ----INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 QA +I+G A L+ +LRAG+L + IVEER VG LG+++I K Sbjct: 386 INVATIQARLGRSFRITGIDNPAEAHNLSMLLRAGALVAPIQIVEERTVGPSLGAENIEK 445 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A+ G + +++ M++ Y +GLVA+ ++ N++L + ++SL+ A LTLP IAGIVL Sbjct: 446 GFTAVALGFIFVLVLMLLYYKAFGLVANLALAANLVLIVGVMSLIPDAALTLPGIAGIVL 505 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE +S ++ G+ A+STIFD+NIT LIA V+LF G Sbjct: 506 TVGMAVDANVLIFERIREELEDGRSPQQAIHHGYDSAFSTIFDANITTLIAAVILFAVGT 565 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G + GFA+T+ + I+ SMFTAI RA++ + K++ + I Sbjct: 566 GPIAGFAVTLAIGIVTSMFTAIIGTRAVVNLVWGGKRLDKLSI 608 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 77/175 (44%), Gaps = 5/175 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716 GP + E I KG V + I +L+ + + +K F L A L ++ +G +L Sbjct: 435 GPSLGAENIEKGFTAVALGFIFVLVLMLLYYK-AFGLVANLALAANLVLIVGVMSLIPDA 493 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 L +A ++ +G +V+ V++++R+R+ + S + I + + Sbjct: 494 ALTLPGIAGIVLTVGMAVDANVLIFERIREEL---EDGRSPQQAIHHGYDSAFSTIFDAN 550 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + I+ + + G I FA+ +A GIV + ++I ++ ++ + + Sbjct: 551 ITTLIAAVILFAVGTGPIAGFAVTLAIGIVTSMFTAIIGTRAVVNLVWGGKRLDK 605 >gi|330720191|gb|EGG98577.1| Protein-export membrane protein SecF [gamma proteobacterium IMCC2047] Length = 306 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 91/294 (30%), Positives = 160/294 (54%), Gaps = 5/294 (1%) Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 FM R SI+ + SI L L++G+DF GG + V + +L+ + Sbjct: 1 MKTFNFDFMGKRRLAAIFSIVLLVVSIASLAFKQLSFGLDFTGGTLIEVSYQQTANLNQI 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R LE Q F E + LVRL Q +++ + ++ + Sbjct: 61 RQQLEQAGYEKPVVQYFGAETDVLVRLPQGYD----QQVGAQVLSTLSEQGQYDVELRRS 116 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 E VG ++ EL +G +G++++ ++IY+ +RF+ F+LGA+ L D+ LG F+L Sbjct: 117 EFVGAQVGEELREQGGLGLLLALGVVMIYVAMRFQLKFSLGAVLALGHDVLIVLGVFSLL 176 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G F+LT +AA+L +IGYS+ND +VV DR+R+N + S D+I++++N+TLGR++ Sbjct: 177 GWNFDLTVLAALLAVIGYSLNDTIVVSDRIRENFRKMRKG-SPTDVINEALNQTLGRTLV 235 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 TS+ + ++ + V+GG +I F++ + G+V+ SSI++AA +LL + + Sbjct: 236 TSLTTVMVLMALTVFGGELIRGFSVALMIGVVIGTYSSIYVAANVLLALGISKE 289 >gi|317052521|ref|YP_004113637.1| protein-export membrane protein SecD [Desulfurispirillum indicum S5] gi|316947605|gb|ADU67081.1| protein-export membrane protein SecD [Desulfurispirillum indicum S5] Length = 515 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 196/534 (36%), Positives = 306/534 (57%), Gaps = 41/534 (7%) Query: 7 LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66 ++L + + + +A P +I+LGLDL+GG HL L+VD + V Sbjct: 8 KLLLIAAVIGFCIHLATP---------------LNEKIALGLDLQGGMHLALDVDTEQAV 52 Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126 L ++ LR +++ + + ++++ +I + + K + + +L Sbjct: 53 ERKLDAMTNALRLEAQQQHLVIGTIQRRGMQILIPVPYAEEKAEFKRLMQRRYGQL--EL 110 Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186 + + L+ + +I+++ A+ Q++E IR RIDQ G+SE T+Q+ G Sbjct: 111 QDEQPELLVY---------GYTTYDIEEIKELAVGQALETIRNRIDQFGVSEPTVQKQGD 161 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS---------- 236 RI+I+LPG +D R +L+G TA + F V N S + + G Sbjct: 162 RRIIIELPGVEDVDRAVELIGRTAMLEFRLVNENVSTRDALDGFLPENSEVLYQRHMDPQ 221 Query: 237 -----DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 D +++ V +G L A FDP+ + P V I+ D GAR F +VT N+G Sbjct: 222 TNTEVDRTPFVLYRDVIFTGDRLLDARVRFDPQFNTPYVSITLDGEGARLFADVTGRNVG 281 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + LA+VLDG V +APVIN+ IPSG+A ISG FT+E A L+ +LR+GSLP ++IVE R Sbjct: 282 RRLAIVLDGHVHSAPVINERIPSGQASISGQFTMEQATDLSIVLRSGSLPAPVDIVENRT 341 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VG LG DSI KG ++ G+ L++LFM+ Y GL+A+ ++ +N+I+ + LL+ GAT Sbjct: 342 VGPTLGQDSIDKGILSVTIGMALVLLFMVAYYRLSGLLANMALLMNLIILMGLLAYFGAT 401 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGI+L IG+AVD+N+L+ ERIREE R+ S +++ G+++A+STI D+NIT L Sbjct: 402 LTLPGIAGIILTIGIAVDANVLIFERIREELRRGASPRLAIEEGYAKAFSTILDANITTL 461 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 I V+LF FG G ++GFA+T+ + IL SMFTAI RA+ I+ YK ++ + I Sbjct: 462 IVAVILFQFGTGPIKGFAVTLSIGILASMFTAILCTRAIYELILVYKPIRKLSI 515 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 83/174 (47%), Gaps = 4/174 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I KGI+ V I +L+++ ++ L A L++++ +G A FG Sbjct: 343 GPTLGQDSIDKGILSVTIGMALVLLFMVAYYRLS-GLLANMALLMNLIILMGLLAYFGAT 401 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V++++R+R+ ++ S R I++ + + ++ Sbjct: 402 LTLPGIAGIILTIGIAVDANVLIFERIREELR---RGASPRLAIEEGYAKAFSTILDANI 458 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I + + +G I FA+ ++ GI+ + ++I I I ++ Sbjct: 459 TTLIVAVILFQFGTGPIKGFAVTLSIGILASMFTAILCTRAIYELILVYKPIRK 512 >gi|33600346|ref|NP_887906.1| preprotein translocase subunit SecD [Bordetella bronchiseptica RB50] gi|33567945|emb|CAE31858.1| protein-export membrane protein [Bordetella bronchiseptica RB50] Length = 626 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 181/518 (34%), Positives = 285/518 (55%), Gaps = 24/518 (4%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74 + LL A P ++ + LGLDLRGG H +L+VD + Sbjct: 110 VALNLLPASPPWMRSL------GWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLV 163 Query: 75 DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134 ++RS L+ + V ++ + + +FA + ++ D + L D + Sbjct: 164 ADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRL--------PDLQFTE 215 Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194 + +++ +L+ + +V A++Q++ + RI+++G++E IQ+ G+ RI++QLP Sbjct: 216 TSDGGKLQLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLP 275 Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248 G QD ++ ++LLG TA + V + + + FG+ D DG LV +V Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVV 335 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304 ++G +L A D +T +P V ++ D GAR F +VTRDNIGK + G V+T Sbjct: 336 LTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 APVI I G+ QISG+ T E A A +LRAG+L ++I+EER +G LG+D+I KG Sbjct: 396 APVIRSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKG 455 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 + + G + I +F+IV Y +G+ + + +NV+L LALLS+L ATLTLP IA I L + Sbjct: 456 FYSTLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTL 515 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+A+D+N+L+NERIREE R + ++ GF RA+ TI DSN+T LI + L FG G Sbjct: 516 GMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +RGFA+ L I+ SMF+++ VRA+ KK S Sbjct: 576 IRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLS 613 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 83/209 (39%), Gaps = 4/209 (1%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G A+ + + + +I +GP + + I KG + IA+ Sbjct: 407 QVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAI 466 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 I+I + + F + + L +++ L ++ L +AA+ +G +++ V++ Sbjct: 467 AIFIIVYYHL-FGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLI 525 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 +R+R+ ++ + + I G + +++ I L + +G I FA+ Sbjct: 526 NERIREELR---NGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829 GIV + SS+ + Y + K Sbjct: 583 HCLGIVTSMFSSVVGVRALANLWYGRKKK 611 Score = 43.9 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 30/128 (23%), Gaps = 29/128 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I + IGLL LPNF +S ++V Sbjct: 3 RYPLWKYITVLVAVVIGLLYTLPNFYGESPA-------------------------VQVS 37 Query: 62 EDDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + + F + + D + Sbjct: 38 SAKATIKVDQATLEQVQQIIENAQLPADSVYYEQNGTLGTVRARFPSTDVQLQARDLIDR 97 Query: 118 FLQGVNSK 125 L V Sbjct: 98 TLNTVAGD 105 >gi|33595818|ref|NP_883461.1| preprotein translocase subunit SecD [Bordetella parapertussis 12822] gi|33565897|emb|CAE36445.1| protein-export membrane protein [Bordetella parapertussis] Length = 626 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 181/518 (34%), Positives = 285/518 (55%), Gaps = 24/518 (4%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74 + LL A P ++ + LGLDLRGG H +L+VD + Sbjct: 110 VALNLLPASPPWMRSL------GWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLV 163 Query: 75 DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134 ++RS L+ + V ++ + + +FA + ++ D + L D + Sbjct: 164 ADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRL--------PDLQFTE 215 Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194 + +++ +L+ + +V A++Q++ + RI+++G++E IQ+ G+ RI++QLP Sbjct: 216 TSDGGKLQLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLP 275 Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248 G QD ++ ++LLG TA + V + + + FG+ D DG LV +V Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVV 335 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304 ++G +L A D +T +P V ++ D GAR F +VTRDNIGK + G V+T Sbjct: 336 LTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 APVI I G+ QISG+ T E A A +LRAG+L ++I+EER +G LG+D+I KG Sbjct: 396 APVIRSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKG 455 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 + + G + I +F+IV Y +G+ + + +NV+L LALLS+L ATLTLP IA I L + Sbjct: 456 FYSTLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTL 515 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+A+D+N+L+NERIREE R + ++ GF RA+ TI DSN+T LI + L FG G Sbjct: 516 GMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +RGFA+ L I+ SMF+++ VRA+ KK S Sbjct: 576 IRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLS 613 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 83/209 (39%), Gaps = 4/209 (1%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G A+ + + + +I +GP + + I KG + IA+ Sbjct: 407 QVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAI 466 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 I+I + + F + + L +++ L ++ L +AA+ +G +++ V++ Sbjct: 467 AIFIIVYYHL-FGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLI 525 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 +R+R+ ++ + + I G + +++ I L + +G I FA+ Sbjct: 526 NERIREELR---NGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829 GIV + SS+ + Y + K Sbjct: 583 HCLGIVTSMFSSVVGVRALANLWYGRKKK 611 Score = 42.4 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 30/128 (23%), Gaps = 29/128 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I + IGLL LPNF +S ++V Sbjct: 3 RYPLWKYITVLVAVVIGLLYTLPNFYGESPA-------------------------VQVS 37 Query: 62 EDDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + + F + + D + Sbjct: 38 SAKATIKVDQATLEQVQQIIENAQLPADSVYYEQNGTLGAVRARFPSTDVQLQARDLIDR 97 Query: 118 FLQGVNSK 125 L V Sbjct: 98 TLNTVAGD 105 >gi|161621301|ref|YP_585088.2| preprotein translocase subunit SecD [Cupriavidus metallidurans CH34] Length = 621 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 168/514 (32%), Positives = 271/514 (52%), Gaps = 29/514 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + LL P +L + LGLDLRGG H +L+VD V+ L Sbjct: 109 VVALNLLSGSPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSL 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ + I + + ++T+ F++ E + L+ Sbjct: 160 AGDARTLLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRE------------ 207 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 L T I ++ V A++Q++ + R++++G++E IQ+ GS RI++QL Sbjct: 208 LAFTMDGTNIVGTFTEAARKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQL 267 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK----GFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P+ FG + L+ +V Sbjct: 268 PGVQDTAKAKDIIGRTATLEARLADPDVRNPRPGDPVPFGDELFTQGNSAPVLLRKQVIF 327 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R +V+R+NIGKP+ +VL + + Sbjct: 328 TGDRIESASAGFDQNQ-RPSVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLTV 386 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ QI+G+++ E A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 387 ATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFD 446 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 ++ G I +FM++ Y +G+ + ++ +N++L +A+LS+L ATLTLP IA I L +G+ Sbjct: 447 SVAYGFAAIAVFMVLYYMLFGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGM 506 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+D+N+L+NERIREE R S S+ +GF RA++TI DSN+T LIA + L FG G VR Sbjct: 507 AIDANVLINERIREELRAGASPQMSIAIGFERAWATILDSNVTTLIAGLALLAFGSGPVR 566 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 GFA+ L IL SMF+A+ R ++ KK Sbjct: 567 GFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKK 600 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG V A+ +++ + + F + ++ L +++ + Sbjct: 424 MEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYY-MLFGVFSVIALGVNLLLLV 482 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ ++G +++ V++ +R+R+ ++ S + I Sbjct: 483 AVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRA---GASPQMSIAIGFERA 539 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FA+ GI+ + S++F ++ Y + Sbjct: 540 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK 599 Query: 829 K 829 K Sbjct: 600 K 600 Score = 39.3 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISL 46 R W I+ + IG+ +PNF ++ + SA ++ L Sbjct: 3 RYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKVDL 47 >gi|54307940|ref|YP_128960.1| preprotein translocase subunit SecD [Photobacterium profundum SS9] gi|46912366|emb|CAG19158.1| putative protein-export membrane protein SecD [Photobacterium profundum SS9] Length = 617 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 152/537 (28%), Positives = 285/537 (53%), Gaps = 42/537 (7%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L P++L + LGLDLRGG H ++EVD D + L Sbjct: 99 FVVALNLAALTPDWLESIGAS---------PMKLGLDLRGGVHFLMEVDMDAAMEKLLGQ 149 Query: 73 YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 + R+ L++ + ++ + + + + + + + ++L+ D Sbjct: 150 QEETFRTELREAKVRYRAISKTDSSVAVRLRNDEDLKAA--------ETALAQLHPDMLF 201 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + ++ ++ + ++ ++A+EQ++ I+R R++++G++E +QR G++RI+++ Sbjct: 202 TDSNSNGRFVLTAQFTEARLKEIRNYAVEQNITILRNRVNELGVAEPLVQRQGANRIVVE 261 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F +V G D +++ ++ Sbjct: 262 LPGVQDTARAKEILGATATLEFREVDSTADLAAAAAGRVPAGSEVKYTRDKRPAVLKKRI 321 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302 ++G H+ ++ + +P V+IS D G + +R+N+GK +A V Sbjct: 322 ILAGSHITD-ASSSADEYGRPQVNISLDSEGGSKMTAFSRNNVGKLMATVFTEYKDSGKR 380 Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + Q +I+G + A LA +LRAG+L ++IVEE Sbjct: 381 QADGKVILQKHEEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGALIAPISIVEE 440 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G +G +I G A++ G+V ++LF ++ Y +GL+A+ ++ +N++L + ++S++ Sbjct: 441 RTIGPSMGQQNIDMGIQAMIWGMVAVMLFTLIYYRGFGLIANMALVMNLVLIIGVMSMIP 500 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R+ +S ++ G++ A+STI D+NI Sbjct: 501 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIQQGYANAFSTIADANI 560 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++LF G GA++GFA+T+ + IL SMFTAI RA++ F+ K++ + I Sbjct: 561 TTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNFVYGGKRVDKLSI 617 Score = 150 bits (378), Expect = 9e-34, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 101/245 (41%), Gaps = 5/245 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +++ + + N + L R G + + Sbjct: 371 FTEYKDSGKRQADGKVILQKHEEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGA 430 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI +I +A++++ I ++ F L A L++++ Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQAMIWGMVAVMLFTLIYYR-GFGLIANMALVMNL 489 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ S + I + Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQ 546 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I ++ F+ Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNFV 606 Query: 824 YDWRA 828 Y + Sbjct: 607 YGGKR 611 >gi|93355730|gb|ABF09819.1| SecYEG protein translocase auxiliary subunit [Cupriavidus metallidurans CH34] Length = 636 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 168/514 (32%), Positives = 271/514 (52%), Gaps = 29/514 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + LL P +L + LGLDLRGG H +L+VD V+ L Sbjct: 124 VVALNLLSGSPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSL 174 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ + I + + ++T+ F++ E + L+ Sbjct: 175 AGDARTLLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRE------------ 222 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 L T I ++ V A++Q++ + R++++G++E IQ+ GS RI++QL Sbjct: 223 LAFTMDGTNIVGTFTEAARKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQL 282 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK----GFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P+ FG + L+ +V Sbjct: 283 PGVQDTAKAKDIIGRTATLEARLADPDVRNPRPGDPVPFGDELFTQGNSAPVLLRKQVIF 342 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R +V+R+NIGKP+ +VL + + Sbjct: 343 TGDRIESASAGFDQNQ-RPSVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLTV 401 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ QI+G+++ E A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 402 ATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFD 461 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 ++ G I +FM++ Y +G+ + ++ +N++L +A+LS+L ATLTLP IA I L +G+ Sbjct: 462 SVAYGFAAIAVFMVLYYMLFGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGM 521 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+D+N+L+NERIREE R S S+ +GF RA++TI DSN+T LIA + L FG G VR Sbjct: 522 AIDANVLINERIREELRAGASPQMSIAIGFERAWATILDSNVTTLIAGLALLAFGSGPVR 581 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 GFA+ L IL SMF+A+ R ++ KK Sbjct: 582 GFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKK 615 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG V A+ +++ + + F + ++ L +++ + Sbjct: 439 MEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYY-MLFGVFSVIALGVNLLLLV 497 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ ++G +++ V++ +R+R+ ++ S + I Sbjct: 498 AVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRA---GASPQMSIAIGFERA 554 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + +G + FA+ GI+ + S++F ++ Y + Sbjct: 555 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK 614 Query: 829 K 829 K Sbjct: 615 K 615 Score = 39.3 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISL 46 R W I+ + IG+ +PNF ++ + SA ++ L Sbjct: 18 RYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKVDL 62 >gi|220905191|ref|YP_002480503.1| preprotein translocase subunit SecD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869490|gb|ACL49825.1| protein-export membrane protein SecD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 526 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 189/531 (35%), Positives = 288/531 (54%), Gaps = 18/531 (3%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W +IL S++ + L+ ALP+ +P ++I+LGLDL+GG HL L VD Sbjct: 4 RWRLILASLVFLVSLVYALPSVPVIGP--ALERVLPSSKINLGLDLKGGIHLTLGVDVAK 61 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 V+ L + +LR + E I V R + TL F ++ L Sbjct: 62 AVSNSLALAGQDLRRMAQDEKIIVLRPRVVGGT-TLEFILP----RAENESKLREILARH 116 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 + + L + + + ++ A++Q++ IR RIDQ G++E I++ Sbjct: 117 FPQLSVAQPLAGEGGQLRYVAHFTPAEVKRLEDMALDQALRTIRNRIDQFGVAEPDIRKQ 176 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG----------FMFGVRFLR 234 +RI +QLPG DP R Q++G TA + FH V + M + Sbjct: 177 AGNRIQVQLPGISDPRRAVQIIGQTAHLEFHLVREDVDPGKAVLPPGVVVLPMLEKNPGQ 236 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 + + VE ++G + A F ++ V +SF+ GAR F VT +++G+ + Sbjct: 237 QAAEGRIAVEKDAMLTGEDVADARPAF-DNMNQSYVTMSFNARGARIFERVTGESVGRRM 295 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 A+VLDG+V +APVI + I GKA ISGNFT A LA +LRAGSLP ++++EER+VG Sbjct: 296 AIVLDGKVYSAPVIRERIGGGKASISGNFTTAEAQDLAIVLRAGSLPAPVSVLEERSVGP 355 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 LG ++I G A + G +V+F+ YG GL+AD + +++ +A + GATLTL Sbjct: 356 SLGQEAIDSGISAALVGAAAVVIFIGFYYGVSGLIADLMLCFTMLIVMAGMGAFGATLTL 415 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL IG+AVD+N+L+ ERIREE R + ++ GF RA +I D+N+T++I T Sbjct: 416 PGIAGIVLTIGMAVDANVLIYERIREELRLGLTPLAAVRAGFDRAMVSITDANLTSIIVT 475 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+L+ FG G +RGFA+T+GL I+ SMFTAI + RA+ R+ K + I Sbjct: 476 VILYQFGTGPIRGFAVTLGLGIVASMFTAIFVSRAIFEEWARHCGPKGLSI 526 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 4/170 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + +E I GI ++ A A++I+I + L A L + + FG Sbjct: 352 SVGPSLGQEAIDSGISAALVGAAAVVIFIGFYYGVS-GLIADLMLCFTMLIVMAGMGAFG 410 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++Y+R+R+ ++L ++ + + + Sbjct: 411 ATLTLPGIAGIVLTIGMAVDANVLIYERIREELRL---GLTPLAAVRAGFDRAMVSITDA 467 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 ++ + I + + +G I FA+ + GIV + ++IF++ I Sbjct: 468 NLTSIIVTVILYQFGTGPIRGFAVTLGLGIVASMFTAIFVSRAIFEEWAR 517 >gi|163793145|ref|ZP_02187121.1| Preprotein translocase subunit SecF [alpha proteobacterium BAL199] gi|159181791|gb|EDP66303.1| Preprotein translocase subunit SecF [alpha proteobacterium BAL199] Length = 317 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 118/301 (39%), Positives = 178/301 (59%), Gaps = 4/301 (1%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 L +P + +++R S L + S+ + T GLN+GIDFKGGI + V Sbjct: 1 MLKPIRFVPRNPKLPIIKSRLAAFVFSALLILGSLTAVATIGLNFGIDFKGGILMEVRTP 60 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 D+S +RS L L +GD+S Q F E+ L+R+Q Q GD AQ + E V+ + Sbjct: 61 GVADISAMRSTLNGLDLGDVSLQEFGDEREVLIRIQRQSGDEAAQIKATEAVRVAL---G 117 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 + TE VGP + +ELI G++ V ++ +++L Y+W RF+W F +GA+ L DI Sbjct: 118 EGVEFRRTEFVGPTVGQELIEAGVLAVGLALLSILFYVWFRFEWQFGVGALVALAHDIIS 177 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T+G FA+ EFNL VAAVLT+ GYS+ND VV+YDR+R+N++ Y + DL + S+N Sbjct: 178 TMGLFAIIQHEFNLATVAAVLTIAGYSINDTVVIYDRVRENLRKY-KKMPLADLFELSVN 236 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 ETL R+ TS +++ + ++GG+V+ FA+ M +GIV+ SSI IA P+LL+ Sbjct: 237 ETLSRTTLTSGTTLLALFAIYLFGGAVLADFALAMIWGIVIGTYSSILIAVPLLLYTGVR 296 Query: 827 R 827 R Sbjct: 297 R 297 >gi|33592187|ref|NP_879831.1| preprotein translocase subunit SecD [Bordetella pertussis Tohama I] gi|33571832|emb|CAE41345.1| protein-export membrane protein [Bordetella pertussis Tohama I] gi|332381604|gb|AEE66451.1| preprotein translocase subunit SecD [Bordetella pertussis CS] Length = 626 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 181/518 (34%), Positives = 285/518 (55%), Gaps = 24/518 (4%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74 + LL A P ++ + LGLDLRGG H +L+VD + Sbjct: 110 VALNLLPASPPWMRSL------GWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLV 163 Query: 75 DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134 ++RS L+ + V ++ + + +FA + ++ D + L D + Sbjct: 164 ADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRL--------PDLQFTE 215 Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194 + +++ +L+ + +V A++Q++ + RI+++G++E IQ+ G+ RI++QLP Sbjct: 216 TSDGGKLQLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLP 275 Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248 G QD ++ ++LLG TA + V + + + FG+ D DG LV +V Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVV 335 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304 ++G +L A D +T +P V ++ D GAR F +VTRDNIGK + G V+T Sbjct: 336 LTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 APVI I G+ QISG+ T E A A +LRAG+L ++I+EER +G LG+D+I KG Sbjct: 396 APVIRSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKG 455 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 + + G + I +F+IV Y +G+ + + +NV+L LALLS+L ATLTLP IA I L + Sbjct: 456 FYSTLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTL 515 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+A+D+N+L+NERIREE R + ++ GF RA+ TI DSN+T LI + L FG G Sbjct: 516 GMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +RGFA+ L I+ SMF+++ VRA+ KK S Sbjct: 576 IRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLS 613 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 83/209 (39%), Gaps = 4/209 (1%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G A+ + + + +I +GP + + I KG + IA+ Sbjct: 407 QVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAI 466 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 I+I + + F + + L +++ L ++ L +AA+ +G +++ V++ Sbjct: 467 AIFIIVYYHL-FGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLI 525 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 +R+R+ ++ + + I G + +++ I L + +G I FA+ Sbjct: 526 NERIREELR---NGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829 GIV + SS+ + Y + K Sbjct: 583 HCLGIVTSMFSSVVGVRALANLWYGRKKK 611 Score = 44.7 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 30/128 (23%), Gaps = 29/128 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I + IGLL LPNF +S ++V Sbjct: 3 RYPLWKYITVLVAVVIGLLYTLPNFYGESPA-------------------------VQVS 37 Query: 62 EDDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + + F + + D + Sbjct: 38 SAKATIKVDQATLEQVQQIIENAQLPVDSVYYEQNGTLGTVRARFPSTDVQLQARDLIDR 97 Query: 118 FLQGVNSK 125 L V Sbjct: 98 TLNTVAGD 105 >gi|113969726|ref|YP_733519.1| preprotein translocase subunit SecD [Shewanella sp. MR-4] gi|113884410|gb|ABI38462.1| protein-export membrane protein SecD [Shewanella sp. MR-4] Length = 616 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 160/522 (30%), Positives = 279/522 (53%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + RS L++E I Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLREEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D+ + + D + + + + V Sbjct: 164 RYAGIRNNAQGIEIKFRDAESLASAERFLKSRSN--------DMVFSDVSKGEDFALQAV 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ + Q+ A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 MSEIYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + +G Q +++ +V ++G H+ GA +F Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRVSAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 D + +P V I+ D G F VT+DNIGKP+A + + + Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394 Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 A LA +LRAG+L ++IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+ ++++FM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 VQAMIWGMAVVLIFMLVYYRSFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 A++GFA+T+ + I SMFTAI R+++ I K++K++ I Sbjct: 575 AIKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI 616 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 93/241 (38%), Gaps = 6/241 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S R+ S+++ I + + + + ++ + Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I +GP + E I G+ +I +LI++ + ++ F L A L ++ +G Sbjct: 436 IVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYR-SFGLIANLALTANLVMVVGV 494 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828 ++ F++ L + G I FA+ + GI + ++I I+ R Sbjct: 552 STIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRV 611 Query: 829 K 829 K Sbjct: 612 K 612 >gi|146293578|ref|YP_001184002.1| preprotein translocase subunit SecD [Shewanella putrefaciens CN-32] gi|145565268|gb|ABP76203.1| protein-export membrane protein SecD [Shewanella putrefaciens CN-32] gi|319426877|gb|ADV54951.1| protein-export membrane protein SecD [Shewanella putrefaciens 200] Length = 616 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 161/522 (30%), Positives = 279/522 (53%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + R+ L++E I Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLREETI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R + I + F D+ + + D + + + V Sbjct: 164 RYAGIRVNASGIEIKFRDAESLASAERFLKSRSN--------DMVFTDVSKGDDFALQAV 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ + QV A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 MSEAYLKQVKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + +G Q +++ +V ++G H+ GA +F Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRISAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 D + +P V I+ D G F VT+DNIGKP+A + + + Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394 Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 A LA +LRAG+L ++IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A+V G+ ++++FM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 VQAMVWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFT+I R+++ I K++K++ I Sbjct: 575 AVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKTLSI 616 Score = 147 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 93/241 (38%), Gaps = 6/241 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S R+ S+++ I + + + + ++ + Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I +GP + E I G+ ++ +LI++ + ++ F L A L ++ +G Sbjct: 436 IVEERTIGPSLGAENIENGVQAMVWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGV 494 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828 ++ F++ L + G + FA+ + GI + +SI I+ R Sbjct: 552 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRV 611 Query: 829 K 829 K Sbjct: 612 K 612 >gi|94967178|ref|YP_589226.1| protein translocase subunit secF [Candidatus Koribacter versatilis Ellin345] gi|94549228|gb|ABF39152.1| protein translocase subunit secF [Candidatus Koribacter versatilis Ellin345] Length = 404 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 75/187 (40%), Positives = 121/187 (64%), Gaps = 1/187 (0%) Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 K ++N EIVGP++ ++L + ++ + S ML+Y+W RF+ + +GA+ Sbjct: 196 KTDYFTSGFGVRNVEIVGPQVGKQLSNQALLATLYSLGGMLVYLWFRFELIYGIGAVVAC 255 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 D T+G F+L + +LT VAA+LTLIGYS+ND +VVYDR+R+N+KL S D+ Sbjct: 256 FHDTIITVGAFSLLNRDISLTVVAAILTLIGYSMNDTIVVYDRIRENIKLL-RRESLADI 314 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ++KSIN+TL R++ TS F++VL + V+GG V+ F++ + GI++ SSI +AAP+L Sbjct: 315 VNKSINQTLSRTILTSGLTFLTVLSLYVFGGEVLRGFSLALVIGILIGTYSSIAVAAPML 374 Query: 821 LFIYDWR 827 + +WR Sbjct: 375 VAYQEWR 381 >gi|241668308|ref|ZP_04755886.1| preprotein translocase subunit SecF [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876841|ref|ZP_05249551.1| preprotein translocase subunit secF [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842862|gb|EET21276.1| preprotein translocase subunit secF [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 313 Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 161/299 (53%), Gaps = 2/299 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I F+ + + S+L + S+ +FT GLN G+DF GG Q+ + A + Sbjct: 1 MEFFKQKTNIDFLGIKKYTTAFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQATSLQN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVPLS 649 + + L + + F N+L++ +S + + K+ E + Sbjct: 61 SATISEKLAKVGFEHTTVTTFGENNNYLIKFTPDEINSKTSSLDSAQQYLKQQVESSLDA 120 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + + +GP++ +EL G++ +II+ + +LIYI RF+ F + A LI D LG Sbjct: 121 KVLSVNYIGPQVGKELASNGVLAIIIAMVCILIYISARFEMKFGISACVALIHDPIVILG 180 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 FA F +EF+LT +AA+L +IGYS+ND VV+YDR+R+N + + + ++++KSIN+TL Sbjct: 181 IFAAFQLEFDLTVLAAILAVIGYSLNDTVVIYDRVRENFRKM-RNANVVEVVNKSINDTL 239 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS + V+ + ++GGS + +F++ + GIVV SSI++A + + + R Sbjct: 240 SRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 298 >gi|240080076|ref|ZP_04724619.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae FA19] Length = 617 Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKALPQLLKLFPEA------------TLNSEGSNIVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K + L+ +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.8 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|90414614|ref|ZP_01222587.1| protein export protein SecD [Photobacterium profundum 3TCK] gi|90324330|gb|EAS40899.1| protein export protein SecD [Photobacterium profundum 3TCK] Length = 606 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 153/537 (28%), Positives = 284/537 (52%), Gaps = 42/537 (7%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L P++L + LGLDLRGG H ++EVD D + L Sbjct: 88 FVVALNLAALTPDWLESIGAS---------PMKLGLDLRGGVHFLMEVDMDAAMEKLLGQ 138 Query: 73 YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 + R+ L++ + ++ + + + + + + + +KL+ D Sbjct: 139 QEETFRTELREAKVRYRAISKTDSSVEVRLRNDEDLKAA--------ETALAKLHPDMLF 190 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + ++ ++ + ++ ++A++Q++ I+R R++++G++E +QR G++RI+++ Sbjct: 191 IDSNSNGRFVLTAQFTEARLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQGANRIVVE 250 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F +V G D +++ ++ Sbjct: 251 LPGVQDTARAKEILGATATLEFREVDSTADLAAAAAGRVPAGSEVKYTRDKRPAVLKKRI 310 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302 ++G H+ ++ + +P V+IS D G + +R+N+GK +A V Sbjct: 311 ILAGSHITD-ASSSADEYGRPQVNISLDSEGGSKMTAFSRNNVGKLMATVFTEYKDSGKR 369 Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + Q +I+G + A LA +LRAG+L ++IVEE Sbjct: 370 QADGKVILQKHEEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGALIAPISIVEE 429 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G +G +I G A++ G+V ++LF ++ Y +GL+A+ ++ +N++L + ++S++ Sbjct: 430 RTIGPSMGQQNIDMGIQAMIWGMVAVMLFTLIYYRGFGLIANLALVMNLVLIIGVMSMIP 489 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R+ +S ++ G+ A+STI D+NI Sbjct: 490 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIQQGYGNAFSTIADANI 549 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++LF G GA++GFA+T+ + IL SMFTAI RA++ FI K++ + I Sbjct: 550 TTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNFIYGGKRVDKLSI 606 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 101/245 (41%), Gaps = 5/245 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +++ + + N + L R G + + Sbjct: 360 FTEYKDSGKRQADGKVILQKHEEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGA 419 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI +I +A++++ I ++ F L A L++++ Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQAMIWGMVAVMLFTLIYYR-GFGLIANLALVMNL 478 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ S + I + Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQ 535 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I ++ FI Sbjct: 536 GYGNAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNFI 595 Query: 824 YDWRA 828 Y + Sbjct: 596 YGGKR 600 >gi|330830089|ref|YP_004393041.1| protein-export membrane protein SecF [Aeromonas veronii B565] gi|328805225|gb|AEB50424.1| Protein-export membrane protein SecF [Aeromonas veronii B565] Length = 315 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 163/299 (54%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I FMR GV S + + ++ LF GLN+G+DF GG + V + V Sbjct: 1 MFQILHFEKPIPFMRYAKPGVVFSSVLMVVALFFLFDRGLNWGLDFTGGTTIEVGFQQSV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 L + LE +I + Q+F ++ L RL + G V Q V ++ + Sbjct: 61 SLDKIHDALEEQKIEGATLQHFGSSRDVLFRLTPKEGVKVEQQ--GNEVLAAAKQLDEGA 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + ++ S + +L Y+ +RF+W ALG I +L+ D+ TLG Sbjct: 119 VLKRVEFVGPSVGDELATDGALAMLASILCILAYVAVRFEWRLALGGILSLVHDVVITLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 FA F EF+LT +AA++TL+GYS+ND +VV+DR+R+N + ++D S+ ETL Sbjct: 179 VFAYFQYEFDLTVLAALMTLVGYSLNDTIVVFDRLRENFRKVRKG-DTEYILDLSMTETL 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS FI VL + + GG++I FA+ M G+ SSI++A+ +F+ R Sbjct: 238 SRTIITSGLTFIVVLALLLKGGALIHGFAVAMVIGVAFGTYSSIYVASAFAMFLGVKRE 296 >gi|167627740|ref|YP_001678240.1| preprotein translocase subunit SecF [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597741|gb|ABZ87739.1| preprotein translocase, subunit F, membrane protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 313 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 161/299 (53%), Gaps = 2/299 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I F+ + + S+L + S+ +FT GLN G+DF GG Q+ + A + Sbjct: 1 MEFFKQKTNIDFLGIKKYTTAFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQATSVQN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVPLS 649 + + L + + F N+L++ +S + + K+ E + Sbjct: 61 SATISEKLAKVGFEHTTVTTFGENNNYLIKFTPDEINSKTSSLDSAQQYLKQQVESSLDA 120 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + + +GP++ +EL G++ +II+ + +LIYI RF+ F + A LI D LG Sbjct: 121 KVLSVNYIGPQVGKELASNGVLAIIIAMVCILIYISARFEMKFGISACVALIHDPIVILG 180 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 FA F +EF+LT +AA+L +IGYS+ND VV+YDR+R+N + + + ++++KSIN+TL Sbjct: 181 IFAAFQLEFDLTVLAAILAVIGYSLNDTVVIYDRVRENFRKM-RNANVVEVVNKSINDTL 239 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS + V+ + ++GGS + +F++ + GIVV SSI++A + + + R Sbjct: 240 SRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 298 >gi|296132722|ref|YP_003639969.1| protein-export membrane protein SecF [Thermincola sp. JR] gi|296031300|gb|ADG82068.1| protein-export membrane protein SecF [Thermincola potens JR] Length = 300 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 153/302 (50%), Gaps = 11/302 (3%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL------NYGIDFKGGIQLGVLANRPVDL 591 + + + R IS++ + I + N GIDF GG + V + V + Sbjct: 1 MTLDIIGKRKIWFAISLIIILAGIASMIIKTFTLGAPLNLGIDFTGGNIITVSFTKNVSV 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 S VR L+ L +G+ Q ++ + +VL+ K + Sbjct: 61 SDVRQALDKLDLGNSVIQKTATG---EFIIRTKTLTDKEYKQVLDAFKNDVAPYQEG--K 115 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + V P I +EL I + I+++ M+IYI RF++ F + AI L+ D+ T+G F Sbjct: 116 LSRNEVKPVIGKELTLNAIWALAIASVLMVIYITFRFEFKFGIAAIIALLHDVFVTMGIF 175 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 ++F E + VAA+LT+IGYS+ND +V++DR+R+N+ +F +L++KSI +T+ R Sbjct: 176 SIFWWEVDSAFVAAILTIIGYSINDTIVIFDRIRENLHRKKKDENFEELVNKSIMQTMAR 235 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 S+ T + I ++ + ++GGS I F + M G++ A SSIF A+P+ + W + Sbjct: 236 SINTVLTVIIVLVALLIFGGSTIRYFTLAMLIGVISGAYSSIFNASPLWVEFKYWEQRRR 295 Query: 832 RI 833 ++ Sbjct: 296 KL 297 >gi|239998371|ref|ZP_04718295.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae 35/02] gi|240015936|ref|ZP_04722476.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae FA6140] gi|240112286|ref|ZP_04726776.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae MS11] gi|240115030|ref|ZP_04729092.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID18] gi|240117315|ref|ZP_04731377.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID1] gi|240122866|ref|ZP_04735822.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID332] gi|240125122|ref|ZP_04738008.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae SK-92-679] gi|254493095|ref|ZP_05106266.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae 1291] gi|268598353|ref|ZP_06132520.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae MS11] gi|268600709|ref|ZP_06134876.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID18] gi|268603015|ref|ZP_06137182.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID1] gi|268681489|ref|ZP_06148351.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID332] gi|268683720|ref|ZP_06150582.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae SK-92-679] gi|226512135|gb|EEH61480.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae 1291] gi|268582484|gb|EEZ47160.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae MS11] gi|268584840|gb|EEZ49516.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID18] gi|268587146|gb|EEZ51822.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID1] gi|268621773|gb|EEZ54173.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID332] gi|268624004|gb|EEZ56404.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae SK-92-679] Length = 617 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKALPQLLKLFPEA------------TLNSEGSNIVLA 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K + L+ +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596 Score = 40.8 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|156502268|ref|YP_001428333.1| preprotein translocase subunit SecF [Francisella tularensis subsp. holarctica FTNF002-00] gi|156252871|gb|ABU61377.1| protein-export membrane protein SecF [Francisella tularensis subsp. holarctica FTNF002-00] Length = 314 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 84/300 (28%), Positives = 160/300 (53%), Gaps = 3/300 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 +I F+ + + S+L + S+ +FT GLN G+DF GG Q+ + + Sbjct: 1 MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648 S + + + + G+ N + + + + + ++ Sbjct: 61 DSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVENSLD 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + +Q+ +GP++ +EL G++ +I++ + +LIYI RF+ F + A L+ D L Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N + + S +++++SIN+T Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNRSINDT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TS + V+ + ++GGS + +F++ + GIVV SSI++A+ + + + R Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVASVVAVALGLNRE 299 >gi|51473235|ref|YP_066992.1| preprotein translocase subunit SecF [Rickettsia typhi str. Wilmington] gi|81390306|sp|Q68XY2|SECF_RICTY RecName: Full=Protein-export membrane protein secF gi|51459547|gb|AAU03510.1| protein-export membrane protein secF [Rickettsia typhi str. Wilmington] Length = 308 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 172/306 (56%), Gaps = 2/306 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + +P+ I FM + SI+ S+ S+ + + N+GIDF GGI + V Sbjct: 1 MQIYPLRFVPNKINFDFMNFKKVSYSFSIILSLISLIWIGIYKFNFGIDFVGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 +R DL +R+ L +L IG++ QNF+ E + +R + + + Sbjct: 61 DRAPDLPKMRAVLSALGIGEVVLQNFESEHDLSIRF-GSSSEENLMKNIDIIKTSLRNNF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R LI G + ++ S +A+++YI +RF+WYF G + L+ D+ Sbjct: 120 PYNFEYRKVDFVGPQVGRHLIEAGAMAMLFSFLAIMVYIGVRFEWYFGFGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ SI Sbjct: 180 LALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL + Sbjct: 239 NETLSRTILTVITTLLANLALILFGGKAIHSFSVLVFFGIIAGTYSSIFISAPILTIFAN 298 Query: 826 WRAKNA 831 + Sbjct: 299 RKFNKK 304 >gi|19704035|ref|NP_603597.1| protein translocase subunit secF [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714227|gb|AAL94896.1| Protein translocase subunit secF [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 317 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 86/295 (29%), Positives = 147/295 (49%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + ++ + IS++ SI + FT GLNYGIDF GG + N Sbjct: 1 MKTNLHVIKNIKIYLSISLVLVTLSIVIFFTKGLNYGIDFSGGNLFQLKYNGTTVTLNQI 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + ++ N + K + + + + + T+ + Sbjct: 61 NENLDKLAKELPQINSNSRKVQISDDGTIIVRVPEISENDKGKVLNNLKELGSYTLDKED 120 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VG I +L + I + I AI ++IYI +RF++ FA+G I +L+ DI +GF AL G Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVIYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 E + +AA+LT++GYS+ND +V+YDR+R+N+K +D+SIN+T RS+ T Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWILEQCMDESINQTAIRSLNT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 S+ SV+ + V+GG+ + +F + + GI+ SSIF+A P++ + + N Sbjct: 241 SVTTLFSVIAILVFGGASLKTFIMTLLIGILAGTYSSIFVATPVVYLLNKRKGNN 295 >gi|157961298|ref|YP_001501332.1| preprotein translocase subunit SecD [Shewanella pealeana ATCC 700345] gi|157846298|gb|ABV86797.1| protein-export membrane protein SecD [Shewanella pealeana ATCC 700345] Length = 610 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 158/522 (30%), Positives = 269/522 (51%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + R+ L+ E I Sbjct: 98 NLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMTEAKVADFRTDLRAEKI 157 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D+ + + D + + Sbjct: 158 RYAGIRNGAKGIEIKFRDAETLTKAENFLKSRSN--------DMVFQDKTVGDDYVLVAN 209 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 S+ + Q+ A++Q++ +R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 210 PSEAYLKQIKEEALQQNITTLRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 269 Query: 207 GTTAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 TA + FH V G + G +++ V ++G H+ GA +F Sbjct: 270 SATASIEFHMVDEKADVQAAMSGRVPAGSELYQRRTGGPVVLKKAVMLTGDHIQGAQPSF 329 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA---------------- 305 D + +P V I+ D G F VT+DNIGKP+A + T Sbjct: 330 DEYS-RPQVAINLDAKGGSIFSNVTKDNIGKPMATLFIEYKDTGEKNADGSVKMKKIEEV 388 Query: 306 -PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 V G+ + A LA +LRAG+L + IVEER +G LG ++I G Sbjct: 389 ISVATIQARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGKENIDNG 448 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+ ++++FM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 449 MQAMIWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 508 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 509 VGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 568 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFT I R+++ I K++K + I Sbjct: 569 AVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI 610 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 91/238 (38%), Gaps = 6/238 (2%) Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 ++ S+++ I + + + + ++ I Sbjct: 374 KNADGSVKMKKIEEVISVATIQARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEE 433 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 +GP + +E I G+ +I +LI++ + ++ F L A L ++ +G ++ Sbjct: 434 RTIGPSLGKENIDNGMQAMIWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGVMSMI 492 Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + Sbjct: 493 PGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHEGYGNAFSTIA 549 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 ++ F++ L + G + FA+ + GI + + I I+ R K Sbjct: 550 DANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKK 607 >gi|91774866|ref|YP_544622.1| preprotein translocase subunit SecF [Methylobacillus flagellatus KT] gi|91708853|gb|ABE48781.1| protein translocase subunit secF [Methylobacillus flagellatus KT] Length = 311 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 97/298 (32%), Positives = 165/298 (55%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM IS++ + S+ L T GL+ G+DF GG + V + + Sbjct: 1 MEFFRIKKDIPFMSYGRLTTTISLVTFLLSVFFLATKGLHLGVDFTGGTMMEVSYPQAAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R ++ + + D + QNF ++ L+RL +PG S AQ + + V + P Sbjct: 61 LDNIRKAVDEIGLKDATVQNFGTSQDVLIRLPIKPGLSTAQ--LSDQVLAALAADNPEVK 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + E VGP++ +EL KG + ++ + ++ Y+ +RF+W FA+ A+ + D+ LGF Sbjct: 119 LHRVEFVGPQVGQELYEKGALAMLFVCVGIMAYLAMRFEWRFAVAAVIANMHDVIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EFNLT +AAVL ++GYSVN+ VVV+DR+R+N + S ++I+ +I T+ Sbjct: 179 FAFFQWEFNLTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRK-ASVPEVINNAITRTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T + + VL M +GG V+ +FA+ + GI+ SS+ +A+PI +++ R Sbjct: 238 RTIITHFSTELMVLSMLFFGGEVLHNFALALTIGILFGIYSSVLVASPIAMYLGVSRE 295 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 90/182 (49%), Gaps = 5/182 (2%) Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVI 399 ++ + VG +G + KG A++ V I+ ++ + + ++ + A + +VI Sbjct: 114 NPEVKLHRVEFVGPQVGQELYEKGALAMLFVCVGIMAYLAMRFEWRFAVAAVIANMHDVI 173 Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFS 457 + L + L +A ++ +G +V+ +++V +R+RE RK + SV ++ + Sbjct: 174 IILGFFAFFQWEFNLTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRKASVPEVINNAIT 233 Query: 458 RAYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 R S TI T L+ +LFF GG + FA+ + + IL +++++ + + +++ Sbjct: 234 RTMSRTIITHFSTELMVLSMLFF-GGEVLHNFALALTIGILFGIYSSVLVASPIAMYLGV 292 Query: 517 YK 518 + Sbjct: 293 SR 294 >gi|329113325|ref|ZP_08242106.1| Protein-export membrane protein SecD [Acetobacter pomorum DM001] gi|326697150|gb|EGE48810.1| Protein-export membrane protein SecD [Acetobacter pomorum DM001] Length = 521 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 199/502 (39%), Positives = 289/502 (57%), Gaps = 12/502 (2%) Query: 28 PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87 P M FPS P +I LGLDLRGGS+L+++VD + LQ ++ R L K +G Sbjct: 26 PNGMRKPFPSI-PWRQIHLGLDLRGGSYLLMQVDLKSLTHDRLQTLAENTRDALLKSQLG 84 Query: 88 VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL-LVTTTEKEISIV 146 ++ +K T+SF R V KL + + I++V Sbjct: 85 YQNINVNADKNTVSFQP-RDTAEADRDV-----ATLDKLPRVVPNEFSVKKQDDGTIALV 138 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS + I A+ QS+EI+R+RID G + I R G RI+++LPG DP R++ LL Sbjct: 139 LSADAIKARAREAVTQSIEIVRRRIDGTGAVDPEITRQGDDRIVVELPGISDPERIKALL 198 Query: 207 GTTAKMSFHKVLPN----NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 GTTAKM+F V N + V ++G V D V++ G L A A D Sbjct: 199 GTTAKMTFRLVDSNPLHATYAPPGVSLVPMANPAEGGPLPVFDHVDVDGTDLTNAGAVID 258 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 +T + V SFD +G R F VT+ N+GK A+VLD +V+ APVI I G QI+G Sbjct: 259 QQTGEWAVSFSFDSVGTRAFSSVTQTNVGKRFAIVLDNKVIEAPVIRTPITGGNGQITGG 318 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 F + A LA MLRAG+LP L++VE+R++G LG+DSI G ++ G +L+V+FM++ Sbjct: 319 FDAQKATDLALMLRAGALPAPLSVVEQRSIGPSLGADSIRAGILSLGVGFLLVVVFMVLF 378 Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 YG++G AD ++ N++L +A+LSL ATLTLP +AG++L +G+AVD+NIL+NERIREE Sbjct: 379 YGRFGWYADIALLANLVLMVAILSLFEATLTLPGMAGMLLTLGMAVDANILINERIREEV 438 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 + ++ ++ GF RA STI DSN TA +A V+LF FG G VRGFA+T+ + I ++FT Sbjct: 439 ARGRTPLAAMQTGFERATSTIVDSNATAFLAHVMLFVFGTGPVRGFALTITIGIATTLFT 498 Query: 503 AISIVRAMMIFIIRYKKMKSID 524 + + R +M + S+ Sbjct: 499 TLLLSRMLMARWYARTRPASLP 520 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 98/262 (37%), Gaps = 10/262 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS----- 628 G + + + ++ + + ++R G+ Sbjct: 259 QQTGEWAVSFSFDSVGTRAFSSVTQTNVGKRFAIVLDNKVIEAPVIRTPITGGNGQITGG 318 Query: 629 -VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 AQ + + + ++ +GP + + IR GI+ + + + +++++ + Sbjct: 319 FDAQKATDLALMLRAGALPAPLSVVEQRSIGPSLGADSIRAGILSLGVGFLLVVVFMVLF 378 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + F A L+ ++ + +LF L +A +L +G +V+ +++ +R+R+ Sbjct: 379 YG-RFGWYADIALLANLVLMVAILSLFEATLTLPGMAGMLLTLGMAVDANILINERIREE 437 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + + + V ++ AF++ + + V+G + FA+ + GI Sbjct: 438 VA---RGRTPLAAMQTGFERATSTIVDSNATAFLAHVMLFVFGTGPVRGFALTITIGIAT 494 Query: 808 AASSSIFIAAPILLFIYDWRAK 829 +++ ++ ++ Y Sbjct: 495 TLFTTLLLSRMLMARWYARTRP 516 >gi|253997303|ref|YP_003049367.1| protein-export membrane protein SecD [Methylotenera mobilis JLW8] gi|253983982|gb|ACT48840.1| protein-export membrane protein SecD [Methylotenera mobilis JLW8] Length = 609 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 162/509 (31%), Positives = 286/509 (56%), Gaps = 24/509 (4%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L R P + + LGLDLRGG H +L+VD ++ + + + R+ L+KE + Sbjct: 104 NLLSRSPDWLRSIGAKPMYLGLDLRGGVHFLLQVDMKAALDKAAERFVGDFRTALRKERV 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + + + F + ++ + K + + + + +S Sbjct: 164 SYAGVTREGQTVQIRFTSAAELAKARKIISNQYPDLTLKDSANGEDIV--------LSAS 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+ ++ A++Q+++ + RI+++G++E IQ+ G R+++QLPG QD ++ +++L Sbjct: 216 LNAVEQKRIQEFALKQNIQTLHNRINELGVAEPIIQQQGMDRVVVQLPGVQDTAKAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKK---------GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257 G TA + V S G +D +G LV+ V ++G ++ A Sbjct: 276 GRTATLEIRLVDEEKSDAMTLEKAAQGQAPIGTDAFKDREGRPILVKKNVVLTGDYITDA 335 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIP 313 + +T + VV+++ D GAR F +VTR+N+GK + + V+TAPVIN+ I Sbjct: 336 GPGVNGQTGQSVVNVTLDARGARVFQQVTRENVGKRMAILLIEKGNTEVVTAPVINEEIG 395 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 G+ QISG + A ++ +LRAG+L ++IVEER VG +G ++I +G + + G Sbjct: 396 GGRVQISGMANTQEATDISLLLRAGALAAPMDIVEERTVGPSMGEENIKRGMHSTLWGFA 455 Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433 I +FMIV Y +G ++ ++ +N++L +A+LS+L ATLTLP +A + L +G+A+D+N+L Sbjct: 456 AIAVFMIVYYMVFGGISVLALGINLLLLVAVLSMLQATLTLPGLAAVALTLGMAIDANVL 515 Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493 VNERIREE R + S+ +G+ RA+ TI DSN+T +IA + LF FG G V+GFA+ Sbjct: 516 VNERIREELRSGNTPQASIHIGYDRAWDTILDSNVTTMIAGIALFLFGSGPVKGFAVVHV 575 Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKS 522 L IL SMF+A+ + RA++ ++ ++ + Sbjct: 576 LGILTSMFSAVVVSRAIVNWVYGSRRKTT 604 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 89/201 (44%), Gaps = 4/201 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 Q + + + I VGP + E I++G+ + A+ +++ + + Sbjct: 406 NTQEATDISLLLRAGALAAPMDIVEERTVGPSMGEENIKRGMHSTLWGFAAIAVFMIVYY 465 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 F ++ L +++ + ++ L +AAV +G +++ V+V +R+R+ + Sbjct: 466 -MVFGGISVLALGINLLLLVAVLSMLQATLTLPGLAAVALTLGMAIDANVLVNERIREEL 524 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + + + I + + +++ I+ + + ++G + FA+ GI+ + Sbjct: 525 R---SGNTPQASIHIGYDRAWDTILDSNVTTMIAGIALFLFGSGPVKGFAVVHVLGILTS 581 Query: 809 ASSSIFIAAPILLFIYDWRAK 829 S++ ++ I+ ++Y R K Sbjct: 582 MFSAVVVSRAIVNWVYGSRRK 602 Score = 43.1 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 25/119 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I + +GL+ A+PN +S + Sbjct: 3 RYPLWKNIFVVFMILMGLIYAIPNLFGESPA---------------------IQVTPTKS 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 L L+KE I + + FA++ + D + L Sbjct: 42 TSKIDPALLAQV----EQILQKEKIAYDGIYLDARGVKARFANTDTQIKAKDLLQANLS 96 >gi|258542154|ref|YP_003187587.1| preprotein translocase subunit SecD [Acetobacter pasteurianus IFO 3283-01] gi|256633232|dbj|BAH99207.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus IFO 3283-01] gi|256636291|dbj|BAI02260.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus IFO 3283-03] gi|256639344|dbj|BAI05306.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus IFO 3283-07] gi|256642400|dbj|BAI08355.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus IFO 3283-22] gi|256645455|dbj|BAI11403.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus IFO 3283-26] gi|256648508|dbj|BAI14449.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus IFO 3283-32] gi|256651561|dbj|BAI17495.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654552|dbj|BAI20479.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus IFO 3283-12] Length = 521 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 199/502 (39%), Positives = 289/502 (57%), Gaps = 12/502 (2%) Query: 28 PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87 P M FPS P +I LGLDLRGGS+L+++VD + LQ ++ R L K +G Sbjct: 26 PNGMRKPFPSI-PWRQIHLGLDLRGGSYLLMQVDLKSLTHDRLQTLAENTRDTLLKSQLG 84 Query: 88 VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL-LVTTTEKEISIV 146 ++ +K T+SF R V KL + + I++V Sbjct: 85 YQNINVDADKNTVSFQP-RDAAEADTDV-----ATLDKLPRVVPNEFSVKKQDDGTIALV 138 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS + I A+ QS+EI+R+RID G + I R G RI+++LPG DP R++ LL Sbjct: 139 LSADAIKARAREAVTQSIEIVRRRIDGTGAVDPEITRQGDDRIVVELPGISDPERIKALL 198 Query: 207 GTTAKMSFHKVLPN----NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 GTTAKM+F V N + V ++G V D V++ G L A A D Sbjct: 199 GTTAKMTFRLVDSNPLHATYPPPGVSLVPMANPAEGGPLPVFDHVDVDGTDLTNAGAVID 258 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322 +T + V SFD +G R F VT+ N+GK A+VLD +V+ APVI I G QI+G Sbjct: 259 QQTGEWAVSFSFDSVGTRAFSSVTQTNVGKRFAIVLDNKVIEAPVIRTPITGGNGQITGG 318 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 F + A LA MLRAG+LP L++VE+R++G LG+DSI G ++ G +L+V+FM++ Sbjct: 319 FDAQKATDLALMLRAGALPAPLSVVEQRSIGPSLGADSIRAGILSLGVGFLLVVVFMVLF 378 Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 YG++G AD ++ N++L +A+LSL ATLTLP +AG++L +G+AVD+NIL+NERIREE Sbjct: 379 YGRFGWYADIALLANLVLMVAILSLFEATLTLPGMAGMLLTLGMAVDANILINERIREEV 438 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 + ++ ++ GF RA STI DSN TA +A V+LF FG G VRGFA+T+ + I ++FT Sbjct: 439 ARGRTPLAAMQTGFERATSTIVDSNATAFLAHVMLFVFGTGPVRGFALTITIGIATTLFT 498 Query: 503 AISIVRAMMIFIIRYKKMKSID 524 + + R +M + S+ Sbjct: 499 TLLLSRMLMARWYARTRPASLP 520 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 98/262 (37%), Gaps = 10/262 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS----- 628 G + + + ++ + + ++R G+ Sbjct: 259 QQTGEWAVSFSFDSVGTRAFSSVTQTNVGKRFAIVLDNKVIEAPVIRTPITGGNGQITGG 318 Query: 629 -VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 AQ + + + ++ +GP + + IR GI+ + + + +++++ + Sbjct: 319 FDAQKATDLALMLRAGALPAPLSVVEQRSIGPSLGADSIRAGILSLGVGFLLVVVFMVLF 378 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + F A L+ ++ + +LF L +A +L +G +V+ +++ +R+R+ Sbjct: 379 YG-RFGWYADIALLANLVLMVAILSLFEATLTLPGMAGMLLTLGMAVDANILINERIREE 437 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + + + V ++ AF++ + + V+G + FA+ + GI Sbjct: 438 VA---RGRTPLAAMQTGFERATSTIVDSNATAFLAHVMLFVFGTGPVRGFALTITIGIAT 494 Query: 808 AASSSIFIAAPILLFIYDWRAK 829 +++ ++ ++ Y Sbjct: 495 TLFTTLLLSRMLMARWYARTRP 516 >gi|59800644|ref|YP_207356.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae FA 1090] gi|268596230|ref|ZP_06130397.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae FA19] gi|59717539|gb|AAW88944.1| putative protein-export membrane protein [Neisseria gonorrhoeae FA 1090] gi|268550018|gb|EEZ45037.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae FA19] Length = 618 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N +T+ D+ + ++ + + I + Sbjct: 165 RSGTVRQAENSLTVPLQDAGDVQKALPQLLKLFPEA------------TLNSEGSNIVLT 212 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 272 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K + L+ +VE++G ++N A Sbjct: 273 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 332 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597 Score = 40.4 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 4 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 47 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK GI M + N + + F D+ + D + L Sbjct: 48 ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 96 >gi|182677988|ref|YP_001832134.1| protein-export membrane protein SecF [Beijerinckia indica subsp. indica ATCC 9039] gi|182633871|gb|ACB94645.1| protein-export membrane protein SecF [Beijerinckia indica subsp. indica ATCC 9039] Length = 319 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 121/302 (40%), Positives = 182/302 (60%), Gaps = 5/302 (1%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L P+ FMR R S L SI ++ + T G+N+GIDF GG L + A Sbjct: 1 MKLLRLAPENTRFPFMRLRRLSYPFSALMSILAVTIFLTWGMNFGIDFSGGTLLELRAKE 60 Query: 588 -PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 P DL +R + L IGDI Q F + VR QPG AQ + V++ I Sbjct: 61 GPADLVELRELGDHLNIGDIEVQGFGTPSDVTVRFGLQPGGDAAQEAAVNRVRQTI---G 117 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 I+ E+VGP++S EL++ G +GV++S IA+L Y+W RF+W FA+GAI + D+ Sbjct: 118 ERYDIRRIEVVGPRVSGELVQSGTLGVVLSIIAVLGYLWFRFEWQFAVGAIIATMHDLLL 177 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T+GFF++ +EFN T++AA+LT++GYS+N+ VVV DR+R+ MK Y I LID S+N Sbjct: 178 TVGFFSVTQLEFNTTSIAAILTIVGYSLNETVVVLDRIREMMKKYRK-IPTDQLIDLSVN 236 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 L R++ T+ F+++L + ++GG VI SF++ M +GIVVA SS+FI +P+L+++ Sbjct: 237 AVLPRTIMTATTVFLALLSLVIFGGQVIRSFSLAMIWGIVVATYSSVFICSPMLIYLGLR 296 Query: 827 RA 828 Sbjct: 297 NE 298 >gi|120598344|ref|YP_962918.1| preprotein translocase subunit SecD [Shewanella sp. W3-18-1] gi|120558437|gb|ABM24364.1| protein-export membrane protein SecD [Shewanella sp. W3-18-1] Length = 616 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 161/522 (30%), Positives = 279/522 (53%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + R+ L++E I Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLREETI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R + I + F D+ + + D + + + V Sbjct: 164 RYAGIRVNASGIEIKFRDAESLASAERFLKSRSN--------DMVFTDVSKGEDFALQAV 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ + QV A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 MSEAYLKQVKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + +G Q +++ +V ++G H+ GA +F Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRISAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 D + +P V I+ D G F VT+DNIGKP+A + + + Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394 Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 A LA +LRAG+L ++IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A+V G+ ++++FM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 VQAMVWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFT+I R+++ I K++K++ I Sbjct: 575 AVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKTLSI 616 Score = 147 bits (369), Expect = 9e-33, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 93/241 (38%), Gaps = 6/241 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S R+ S+++ I + + + + ++ + Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I +GP + E I G+ ++ +LI++ + ++ F L A L ++ +G Sbjct: 436 IVEERTIGPSLGAENIENGVQAMVWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGV 494 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828 ++ F++ L + G + FA+ + GI + +SI I+ R Sbjct: 552 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRV 611 Query: 829 K 829 K Sbjct: 612 K 612 >gi|242240320|ref|YP_002988501.1| preprotein translocase subunit SecD [Dickeya dadantii Ech703] gi|242132377|gb|ACS86679.1| protein-export membrane protein SecD [Dickeya dadantii Ech703] Length = 604 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 165/524 (31%), Positives = 285/524 (54%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD + ++ + D LRS L+++ + Sbjct: 93 NLAPSTPHWLRMLGAEPMKLGLDLRGGVHFLMEVDMETALSKLQEQTMDSLRSDLREKNV 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+R+ N + + F D + ++ D +T + ++ ++ + Sbjct: 153 QYASIRKSDNYGVEIVFRDGQQRDQSVDYLTSRHR-----------DLVITSSGSDTLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMSDARLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N G DG + +V ++G H+ +T+ Sbjct: 262 LGATATLEFRLVNSNVDPAALASGRVPGDTEVKNMRDGGPIALYKRVILTGDHITDSTS- 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 + + ++P V+IS D G T+ NIGKP+A + + Sbjct: 321 GNDEYNRPQVNISLDSAGGNMMLNFTKVNIGKPMATLFVEYKDSGKKGANGRAILEKQEE 380 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q+ +I+G A LA +LRAG+L + IVEER +G LG +I Sbjct: 381 VINVATIQSPLGNSFRITGIDNPNEARQLALLLRAGALIAPIQIVEERTIGPTLGMQNIT 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL + +LFMI Y K+G++A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 441 QGLEACLAGLAVSILFMIFFYKKFGMIATSALLSNLVLVVGIMSLLPGATLTMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+N+T LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAIG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 561 TGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 604 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 80/205 (39%), Gaps = 5/205 (2%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + ++ I +GP + + I +G+ + ++++ Sbjct: 401 DNPNEARQLALLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMIFF 460 Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 +K F + A + L+ ++ +G +L G + +A ++ + +V+ V++ +R+++ Sbjct: 461 YK-KFGMIATSALLSNLVLVVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE 519 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 + + + + ID+ ++ I V+ + G I FAI G+ Sbjct: 520 EL---SNGRTVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAIGTGSIKGFAITTGIGVA 576 Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831 + ++I I+ +Y + Sbjct: 577 TSMFTAIVGTRAIVNLLYGGKRIKK 601 >gi|218549932|ref|YP_002383723.1| preprotein translocase subunit SecD [Escherichia fergusonii ATCC 35469] gi|218357473|emb|CAQ90112.1| SecYEG protein translocase auxillary subunit [Escherichia fergusonii ATCC 35469] gi|324114627|gb|EGC08595.1| protein-export membrane protein SecD [Escherichia fergusonii B253] Length = 615 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 171/524 (32%), Positives = 295/524 (56%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ +N +T++F DS+ ++ S L+ + ++ + + + Sbjct: 164 PYTTVRKDKNYALTITFRDSKARDEAI-----------SYLSPRHQDLVISSQGDNALRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLLVSILFMILFYKKFGLIATSALVANLILIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE +SV ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + + ++++ + +K F L A + L+ ++ +G +L Sbjct: 440 TIGPTLGMQNIEQGLEACLAGLLVSILFMILFYK-KFGLIATSALVANLILIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + S + ID+ Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYRGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612 >gi|152968932|ref|YP_001334041.1| preprotein translocase subunit SecD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262042429|ref|ZP_06015589.1| protein-export membrane protein SecD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330006902|ref|ZP_08305774.1| export membrane protein SecD [Klebsiella sp. MS 92-3] gi|150953781|gb|ABR75811.1| protein export protein SecD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259040204|gb|EEW41315.1| protein-export membrane protein SecD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535656|gb|EGF62105.1| export membrane protein SecD [Klebsiella sp. MS 92-3] Length = 604 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 170/524 (32%), Positives = 291/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+ +GI Sbjct: 93 NLAPATPRWLAALYAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSELRDKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N +++ F DS ++ S L+ + ++ + + + Sbjct: 153 PYATVRKEDNYGLSIVFRDSAARDQAI-----------SYLSPRHRDLVISSQGDNSLKA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMTDERLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -MDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILAKEEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI+ Y K+GL+A ++ N+IL + ++SL+ ATLT+P IAGIV Sbjct: 441 QGLEACLAGLVVSILFMILFYKKFGLIATSALIANLILIVGIMSLIPGATLTMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+N+T LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ I SMFTAI RA++ + K++K + I Sbjct: 561 TGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ + +K F L A + LI ++ +G +L Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMILFYK-KFGLIATSALIANLILIVGIMSLIP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI GI + ++I I+ +Y + Sbjct: 545 ANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKK 601 >gi|330863961|emb|CBX74045.1| protein-export membrane protein secD [Yersinia enterocolitica W22703] Length = 604 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 164/537 (30%), Positives = 290/537 (54%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P++L + + + LGLDLRGG H ++EVD D + + Sbjct: 89 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LRS L+++ I ++R++ N + + F D + +++ S L+ + Sbjct: 140 MDTLRSDLREKNIPYATVRKLDNYGVEVRFRDDKTRDDAI-----------SYLSPRHRD 188 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + + V+S + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 189 LVIGSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 248 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 308 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 309 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKK 367 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 368 DANGRAVLVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 427 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM+V Y K+G++A ++ N++L + ++SLL Sbjct: 428 RTIGPTLGSQNITQGLEACLWGLAVSILFMVVYYRKFGVIASTALLANLVLIVGVMSLLP 487 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE + +++ ++ G+ A+S+I D+N+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYKNGRTIQQAIHEGYKGAFSSIVDANV 547 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 429 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YKNGRTIQQAIHEGYKGAFSSIVD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 545 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|15604437|ref|NP_220955.1| preprotein translocase subunit SecD [Rickettsia prowazekii str. Madrid E] gi|6647814|sp|Q9ZCW8|SECD_RICPR RecName: Full=Protein-export membrane protein secD gi|3861131|emb|CAA15031.1| PROTEIN-EXPORT MEMBRANE PROTEIN SECD (secD) [Rickettsia prowazekii] gi|292572206|gb|ADE30121.1| Protein-export membrane protein secD [Rickettsia prowazekii Rp22] Length = 518 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 205/533 (38%), Positives = 323/533 (60%), Gaps = 28/533 (5%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+N W ++L + ++ ALPNF+ + +P + I+LGLDLRGG++L+L+ Sbjct: 1 MQNLPKWKIVLSIICTVFAIICALPNFIQINS-----KFLPHDSINLGLDLRGGANLLLD 55 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 VD D ++N ++ +D LR L+K IG ++ N I L +++ + Sbjct: 56 VDFDTYLNDSMENLADTLRKNLRKHKIGYKNLLVRHNNIQLEVRSPEVLKSLKKIINK-- 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 +++ + +I + S++ + +++ +EQS+EI+R R+D G E Sbjct: 114 ----------IDPEIIIGVNKNKIKLRYSESRFNDLLNKVVEQSIEIVRMRVDSTGTKEP 163 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 T+QR G+ IL+Q+PG ++PS L+ +LG TAK++FH V N + + + G L Sbjct: 164 TLQRQGNKHILLQVPGSENPSYLKNILGKTAKLTFHLVDENANIEDAIKGHVPLGSMLIK 223 Query: 240 ---------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +++ KV +SG HL A+A+FD + +P+V SF+ +G++ F E+T++N Sbjct: 224 GDSKHHGEYYIVIKKKVLLSGAHLTKASASFDQNS-QPIVAFSFNNLGSKIFGEITKNNT 282 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 GK LA+VLD ++L+AP+IN AI G I+GNFTIE+A LA +LR GSLP L I+EER Sbjct: 283 GKRLAIVLDNKLLSAPIINGAIIGGNGIITGNFTIESANELALLLRVGSLPTPLKIIEER 342 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 ++G +LG+DSI G A + G V + +FMI+ YG GL A+ ++ L ++ LALLSL A Sbjct: 343 SIGPNLGADSIESGKKAGLIGFVAVCIFMILSYGVIGLFANIALILALLYILALLSLFQA 402 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAGI+L IG+AVD+N+L+ ERI+EE K S ++ GF A++TI DSNIT Sbjct: 403 TLTLPGIAGIILTIGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATIIDSNITT 462 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 LI L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K K + Sbjct: 463 LIVAFALYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDVWVKYFKPKKL 515 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 80/178 (44%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I +A+ I++ + + L A LIL + L +LF Sbjct: 343 SIGPNLGADSIESGKKAGLIGFVAVCIFMILSYGVI-GLFANIALILALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG +V+ V++Y+R+++ + +S I + + Sbjct: 402 ATLTLPGIAGIILTIGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATIIDS 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S+I I +L+ ++ K ++ Sbjct: 459 NITTLIVAFALYIFGVGAIKGFAVALTIGIISSMFSAIIITK-LLIDVWVKYFKPKKL 515 >gi|114563864|ref|YP_751378.1| preprotein translocase subunit SecF [Shewanella frigidimarina NCIMB 400] gi|114335157|gb|ABI72539.1| protein translocase subunit secF [Shewanella frigidimarina NCIMB 400] Length = 315 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 93/299 (31%), Positives = 165/299 (55%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F + + F+R F +S++ I S L G+N+G+DF GG + + + PV Sbjct: 1 MFQIFSVKNTVDFLRHAFPISVMSLILVIASFVSLGVQGINWGLDFTGGTVVEMEFSAPV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL+ +R+ + + + QNF ++ LVRL + + + + V I Sbjct: 61 DLNALRATMTTDEAEGAVVQNFGSSRDILVRLPVR--NELKSDVQVAAVLTAAQSIDSGV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E VGP++ +EL +G + VI++ I +LIY+ RF+W A G++ L D+ TLG Sbjct: 119 IQKRVEFVGPQVGKELAEQGGLAVIVALICILIYVSFRFEWRLAAGSVAALAHDVIVTLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ +EF+LT +A +LT++GYS+ND +VVYDR+R+N + ++++ SI +T+ Sbjct: 179 VFSVLQLEFDLTVLAGLLTVVGYSLNDTIVVYDRIRENFLKMRKG-TPVEIVNTSITQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R+V T+ I+V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 238 SRTVITTGTTLITVIALFLKGGTMIHGFATALLLGIFVGTYSSIYVASYLAIKLGINRE 296 >gi|300715564|ref|YP_003740367.1| protein-export membrane protein [Erwinia billingiae Eb661] gi|299061400|emb|CAX58510.1| Protein-export membrane protein [Erwinia billingiae Eb661] Length = 615 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 159/538 (29%), Positives = 285/538 (52%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 99 FVVALNLAPATPTWLTLLAAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 149 Query: 73 YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+ + I ++R+ N + + F D+ ++ ++ + Sbjct: 150 NIDNLRSDLRDKNIPYTNVRKTDNYGLEIRFRDAASRDAAVSYLSDRHR----------- 198 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 ++ T+ + V++ + + + +A++Q++ I+R R++Q+G++E +QR GS RI++ Sbjct: 199 DLVISGTSGNTLRAVMTDDRLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVV 258 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V G DG + + Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNTTVDPTAAANGRVPGDSEVKNTRDGQPVTLYKR 318 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T++ + ++ V+IS D G T+DNIGKP+A + + Sbjct: 319 VILTGDHITDSTSS-QDEYNQAQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGK 377 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 Q+ +I+G A L+ +LRAG+L + IVE Sbjct: 378 KDANGRAILAKQEEVINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVE 437 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G +G+ +I +G A + GL+ ++FM+V Y K+G++A ++ N++L + ++SLL Sbjct: 438 ERTIGPTMGAQNITQGLEACLWGLIASIVFMVVYYRKFGVIATSALVANLVLIVGIMSLL 497 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE + +S+ ++ G+ A+S+I D+N Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEEIKNGRSIQQAIHEGYKGAFSSIVDAN 557 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 558 VTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRALVNLLYGGKRITKLSI 615 Score = 139 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 80/174 (45%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + IA ++++ + ++ F + A + L+ ++ +G +L Sbjct: 440 TIGPTMGAQNITQGLEACLWGLIASIVFMVVYYR-KFGVIATSALVANLVLIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ +K S + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEIK---NGRSIQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I+ + + G I FAI A G+V + ++I ++ +Y + Sbjct: 556 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRALVNLLYGGKR 609 >gi|307129896|ref|YP_003881912.1| secYEG protein translocase auxillary subunit [Dickeya dadantii 3937] gi|306527425|gb|ADM97355.1| SecYEG protein translocase auxillary subunit [Dickeya dadantii 3937] Length = 323 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR +W G+S L I SI ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYWAFGLSGLLLILSIVVMGVRGFNWGLDFTGGTVIEISLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 VDL +R LE D QNF ++ +VR+ ++ Q ++V Sbjct: 65 SVDLEQMRGALEKAGFADPLVQNFGSSRDIMVRMPPAHDETGGQALGSKVVSVINEATSQ 124 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + ++ E VGP + +L + G + ++ I++L+Y+ RF+W A G + L D+ T Sbjct: 125 NAAVKRIEFVGPSVGADLAQNGAMALMAVLISILVYVGFRFEWRLAAGVVIALAHDVIIT 184 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ + Sbjct: 185 MGVLSLFDIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + +L + ++GG+++ F++ M G+ + +SSI++A+ + L + R Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVTIGTASSIYVASALALKLGMKR 303 Query: 828 A 828 Sbjct: 304 E 304 >gi|315127832|ref|YP_004069835.1| preprotein translocase auxillary membrane component [Pseudoalteromonas sp. SM9913] gi|315016346|gb|ADT69684.1| preprotein translocase auxillary membrane component [Pseudoalteromonas sp. SM9913] Length = 619 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 265/523 (50%), Gaps = 38/523 (7%) Query: 32 LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 P+ + N + LGLDL GG H +E+D V+ L+ + RS L++E + Sbjct: 106 APAQPAWLKSLGGNPMKLGLDLSGGVHFTMEIDMVTAVDNQLEQMEQDFRSDLREEKLRY 165 Query: 89 FSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+R+ ++ + + KE + + ++ + Sbjct: 166 RSVRRVAGSERMRVEMRNEEDKEAAERFLESRYPL---------NVYIDDSSNDNAFFAT 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ + ++ +AI+Q+ IIR RI+QIG++E +QR G+ RI++QLPG QD +R +++L Sbjct: 217 MSELKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPGIQDTARAKEIL 276 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V N G + DG +++ ++ + G H+ GA + Sbjct: 277 GATATLEFREVDENADISAAAQGRIPPGTEMIMSRDGYPVVLKKRIILEGSHITGAQSGA 336 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 D V + GA+ R + V ++ + + Sbjct: 337 DEYQRPQVSIKLDSKGGAKMNAFTKRAIGKRMATVFIEYKPSGKKDSEGKALPPIKVEEV 396 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 QA +I+G A L+ +LRAG+L + IVEER VG LG ++I Sbjct: 397 INVATIQARLDRSFRITGIDNPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIEA 456 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A+ G ++ FM++ Y +GLVA+ ++ N++L + ++SL+ ATLTLP IAGIVL Sbjct: 457 GMTAVALGFAFVLAFMLIYYKGFGLVANIALAANLVLIIGVMSLIPGATLTLPGIAGIVL 516 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE +S ++ G+ A+STIFD+NIT LIA ++LF G Sbjct: 517 TVGMAVDANVLIFERIREELADGRSPQQAVHFGYDSAFSTIFDANITTLIAAIILFAVGT 576 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V GFA+T+ + IL SMFTAI RA++ I K++ + I Sbjct: 577 GPVAGFAVTLAIGILTSMFTAIVGTRAVINLFIGGKRVDKLSI 619 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 75/172 (43%), Gaps = 5/172 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716 GP + +E I G+ V + +L ++ I +K F L A L ++ +G +L G Sbjct: 446 GPSLGQENIEAGMTAVALGFAFVLAFMLIYYK-GFGLVANIALAANLVLIIGVMSLIPGA 504 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 L +A ++ +G +V+ V++++R+R+ + S + + + + Sbjct: 505 TLTLPGIAGIVLTVGMAVDANVLIFERIREELAD---GRSPQQAVHFGYDSAFSTIFDAN 561 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + I+ + + G + FA+ +A GI+ + ++I ++ + Sbjct: 562 ITTLIAAIILFAVGTGPVAGFAVTLAIGILTSMFTAIVGTRAVINLFIGGKR 613 Score = 53.2 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 88/288 (30%), Gaps = 38/288 (13%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + IGLL A PN + ++V Sbjct: 4 KFPIWKYLLVLAVLAIGLLYASPNLYGRDPA-------------------------IQVS 38 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 + L D++ + LKK+ + S + +I + F + + D + L Sbjct: 39 GAKGTDVDL-SVVDKVNAILKKDNVSAKSTKLEDGQILVRFKNVEDQLKAQDLLRNSLSD 97 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID----------QVISHAIEQSMEIIR-Q 169 S +N+ P + + + + + + + +EQ + R Sbjct: 98 DYISAINMAPAQPAWLKSLGGNPMKLGLDLSGGVHFTMEIDMVTAVDNQLEQMEQDFRSD 157 Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 ++ S + GS R+ +++ E+D + L + ++ + +N F Sbjct: 158 LREEKLRYRSVRRVAGSERMRVEMRNEEDKEAAERFLESRYPLNVYIDDSSNDNAFFATM 217 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 + + +++ I A + + I Sbjct: 218 SELKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPG 265 >gi|194097898|ref|YP_002000943.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae NCCP11945] gi|260441154|ref|ZP_05794970.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae DGI2] gi|268594232|ref|ZP_06128399.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae 35/02] gi|291044482|ref|ZP_06570191.1| export protein SecD [Neisseria gonorrhoeae DGI2] gi|293397618|ref|ZP_06641824.1| preprotein translocase SecD subunit [Neisseria gonorrhoeae F62] gi|193933188|gb|ACF29012.1| protein export protein SecD [Neisseria gonorrhoeae NCCP11945] gi|268547621|gb|EEZ43039.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae 35/02] gi|291011376|gb|EFE03372.1| export protein SecD [Neisseria gonorrhoeae DGI2] gi|291611564|gb|EFF40633.1| preprotein translocase SecD subunit [Neisseria gonorrhoeae F62] gi|317163660|gb|ADV07201.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae TCDC-NG08107] Length = 618 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N +T+ D+ + ++ + + I + Sbjct: 165 RSGTVRQAENSLTVPLQDAGDVQKALPQLLKLFPEA------------TLNSEGSNIVLA 212 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 272 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K + L+ +VE++G ++N A Sbjct: 273 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 332 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SM++++ + RA++ ++ Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ + ++ Y R K Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597 Score = 40.4 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 4 RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 47 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK GI M + N + + F D+ + D + L Sbjct: 48 ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 96 >gi|288936874|ref|YP_003440933.1| protein-export membrane protein SecD [Klebsiella variicola At-22] gi|288891583|gb|ADC59901.1| protein-export membrane protein SecD [Klebsiella variicola At-22] Length = 604 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 172/539 (31%), Positives = 298/539 (55%), Gaps = 40/539 (7%) Query: 13 MICCIG-LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 ++ +G + N P + + +A+ + LGLDLRGG H ++EVD D + + Sbjct: 80 LLTVLGDKYVVALNLAPATPR--WLAALYAEPMKLGLDLRGGVHFLMEVDMDTALGKLQE 137 Query: 72 MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 D LRS L+ +GI ++R+ N +++ F DS ++ S L+ Sbjct: 138 QNIDSLRSELRDKGIPYATVRKEDNYGLSIVFRDSAARDQAI-----------SYLSPRH 186 Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 + ++ + + + V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+ Sbjct: 187 RDLVISSQGDNSLKAVMTDERLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIV 246 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVED 245 ++LPG QD +R +++LG TA + F V N + G +G ++ Sbjct: 247 VELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDSEVKETREGQPVVLYK 306 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV--- 302 +V ++G H+ +T++ + ++P V+IS D G T+DNIGKP+A + Sbjct: 307 RVILTGDHITDSTSS-MDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSG 365 Query: 303 ---------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 + Q+ +I+G A L+ +LRAG+L + IV Sbjct: 366 KKDANGRAILAKEEEVINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIV 425 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 EER +G LG +I +G A +AGLV+ +LFMI+ Y K+GL+A ++ N++L + ++SL Sbjct: 426 EERTIGPTLGMQNIKQGLEACLAGLVVSILFMILFYKKFGLIATSALIANLVLIVGIMSL 485 Query: 408 LG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 + ATLT+P IAGIVL + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+ Sbjct: 486 IPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDA 545 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T LI ++L+ G GA++GFAIT G+ I SMFTAI RA++ + K++K + I Sbjct: 546 NVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 134 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ + +K F L A + LI ++ +G +L Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMILFYK-KFGLIATSALIANLVLIVGIMSLIP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI GI + ++I I+ +Y + Sbjct: 545 ANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKK 601 >gi|226939942|ref|YP_002795015.1| preprotein translocase subunit SecF [Laribacter hongkongensis HLHK9] gi|226714868|gb|ACO74006.1| SecF [Laribacter hongkongensis HLHK9] Length = 326 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 89/306 (29%), Positives = 158/306 (51%), Gaps = 3/306 (0%) Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 S + I FM IS+L I ++ LF+ GLN ++F GG + V Sbjct: 9 SNGQKSWWMKHILKHDIPFMSYGKLTTSISLLTFIAAVFFLFSKGLNLSVEFTGGTVMEV 68 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L +R+++++L++G+ + Q + L+RL ++ V + Sbjct: 69 QYAQTAPLEQIRTDIQTLKLGEPTVQALGTSHDVLIRLP--NIKDRTSAQLSNDVLAVLK 126 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + ++ E VGP++ EL+ G+ + + + +++Y+ RF+W FA+ AI + D Sbjct: 127 KDGHQVELRKVEFVGPQVGDELVTNGLTALAMVCLGIILYLAARFEWRFAVSAIIANLHD 186 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLID 762 + LG FALF EF+LT +AA+L ++GYSVN+ VVV+DR+R+N + + ++I+ Sbjct: 187 VVIILGCFALFQWEFSLTVLAAILAVLGYSVNESVVVFDRIRENFRKPAMRGHTTAEIIN 246 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 +I T+ R+ T + VL M ++GG + FA+ + GIV SS+ +A+PI L Sbjct: 247 NAITATMSRTFITHGSTETMVLAMLLFGGPALHGFAMALTIGIVFGIYSSVLVASPIALA 306 Query: 823 IYDWRA 828 + R Sbjct: 307 LGVKRE 312 >gi|325498309|gb|EGC96168.1| preprotein translocase subunit SecD [Escherichia fergusonii ECD227] Length = 604 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 171/524 (32%), Positives = 295/524 (56%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ +N +T++F DS+ ++ S L+ + ++ + + + Sbjct: 153 PYTTVRKDKNYALTITFRDSKARDEAI-----------SYLSPRHQDLVISSQGDNALRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLLVSILFMILFYKKFGLIATSALVANLILIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE +SV ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + + ++++ + +K F L A + L+ ++ +G +L Sbjct: 429 TIGPTLGMQNIEQGLEACLAGLLVSILFMILFYK-KFGLIATSALVANLILIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + S + ID+ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYRGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601 >gi|293604955|ref|ZP_06687352.1| multidrug/solvent RND transporter TtgB [Achromobacter piechaudii ATCC 43553] gi|292816783|gb|EFF75867.1| multidrug/solvent RND transporter TtgB [Achromobacter piechaudii ATCC 43553] Length = 1059 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 72/687 (10%), Positives = 180/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L L Q + ++P+ P G + Sbjct: 8 RPVFAWVIAIVLMMAGALSIL-----QLPVSQYPNIAPPAI---------GIAVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L + ITL+F + +V L Sbjct: 54 AQTVQDTVVQVIEQQMNGLDGLQYISSESNSDGSMSITLTFKQGTNPDTAQVQVQNKLAL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + ++++ + + + D I ++ Sbjct: 114 AQPLLPQEVQQQGIRVTKATKNFLIVAGFVSTDGTMTKDDLADYVASYVQDPISRTQGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L TT + N G Sbjct: 174 DFQLFGSQ-YAMRIWLDPAKLVNYGLTTVDVVAAIKEQNVQVSSGQLGGLPSVRGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + K + + I Sbjct: 233 TIIGPSRL-------------EKPEDFSRILLKVNADGSQVRLGDVSRIELGGQTYAIDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L+ P + S Sbjct: 280 FYNGKPASGLAIKLAPGANALDTAQAVRDTINNLKPYFPPGMDVVYPYDTTPFVSLSIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VFKTLVEAIILVFLVMYLFLQNFRATIIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLTPKQATRKSMGQITGALIGIAMVLAAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ S+++S+ AI A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVLVAIVFTPALCATLLKPIPKGHHGSKRGFFGWFNRTF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + +A R + + L + +G + + Sbjct: 520 ERSSNGYANTVARGLNRTKRLMIVYLALVIAMGWLFTRIPTAFLPAEDQGILFAQIQTPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ ++ ++ + F V G + + ++ Sbjct: 580 GATAEATKAVIDDATKYLLTEEKDAVTSVFAVNGFNFGGRGQNASILFIKLRDWEERGDA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 + R+ + V+ Sbjct: 640 SLKAGAVAARANAHFAKTERRAQMFVV 666 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 84/238 (35%), Gaps = 7/238 (2%) Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 V R L SF N ++L V + + P + Sbjct: 264 DVSRIELGGQTYAIDSFYNGKPASGLAIKLAPGANALDTAQAVRDTINNLKPYFPPGMDV 323 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 P +S + ++ + I + + +++ + + + + + + T G Sbjct: 324 VYPYDTTPFVSLSIHE-VFKTLVEAIILVFLVMYLFLQNFRATIIPTLAVPVVLLGTFGV 382 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 A FG N + ++ IG V+D +VV + + + ++ + KS+ + G Sbjct: 383 LAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLTPKQATRKSMGQITG 440 Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 + +M +PMA +GGS F+I + +V++ +I + + Sbjct: 441 ALIGIAMVLAAVFIPMAFFGGSTGVIYRQFSITIVSSMVLSVLVAIVFTPALCATLLK 498 Score = 71.3 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 80/260 (30%), Gaps = 13/260 (5%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + A V S S ++ N N + Sbjct: 779 RMLPEDLNKWYVRNNAGDMVPFSAFSKATWSFGPQKLNRYNGVPSYNIQGQAAPGYSSGA 838 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A + + K + T + E + + S I + + + ++ Sbjct: 839 AMQEMERLAAKLPVGVGFEWTGLSFEERLSGSQAP----ALYAI--SLIVVFLCLAALYE 892 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + + L I L G+ ++ +LT +G + + +++ + ++ Sbjct: 893 SWSIPTAVMLVVPLGIIGVLLATLARGLSNDVYFQVGLLTTVGLAAKNAILIVEFAKE-- 950 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 + + S + + + L + TS+A + V P+A+ G + + G+ Sbjct: 951 -HFESGASLTESAIHAARQRLRPILMTSLAFILGVTPLAISSGAGSGSQNAIGTGVIGGM 1009 Query: 806 VVAASSSIFIAAPILLFIYD 825 + +IF + + Sbjct: 1010 LTGTFLAIFFVPAFFVIMLR 1029 >gi|240047693|ref|YP_002961081.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma conjunctivae HRC/581] gi|239985265|emb|CAT05278.1| Protein-export membrane protein [Mycoplasma conjunctivae] Length = 862 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 161/868 (18%), Positives = 329/868 (37%), Gaps = 76/868 (8%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60 R N W I ++ LL F+ + + I+ ++ GG+ ++++V Sbjct: 12 RLNTWKKIFVALFS-ASLLSIGIGFVANYYIAQ--------NINRSIEYGGGAEVLVQVK 62 Query: 61 --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM--RQIQNKITLSFADSRFKENIADKVT 116 DE N ++ + L + + +I +S + D + Sbjct: 63 TLDEKVPNNNIVKQADSAIFQRLTGGASLNGTSVFTEGGGRIRISRNKISDNRELNDFIN 122 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + K LLV T + + +++ ++ D Sbjct: 123 EIV-----------TKPLLVVTDTNNKPLFYDGVFNPNISLKDGDETNWLVPFAPDSA-- 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + DP++ + + L ++ F ++ Sbjct: 170 -----------------VSQTDPNQPQANQVRISLKDKQAQLEWTKATEYVSKKPFGQNR 212 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + ++ N + + + K Sbjct: 213 IRIWSNISELINLAKTKFPNEWQNSGENIYNFIHVGESVQP-TPLGQNRFLQPKLKEFQF 271 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 +++ ++ + ISGNF+ + A LA + G KL+ + V Sbjct: 272 DAKKYLISEATVSSPLNGSSFVISGNFSSQEAKQLALNINYGIADYKLDFLSASFVSKSK 331 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 + G AI LV+I +FMIV YG G+V+ S+ L V LTL +++ + + Sbjct: 332 SDYAFLAGWIAIGISLVMIAIFMIVNYGVLGVVSTISLALYVFLTLLFFTIVRGEYSPIT 391 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 I+ +V+GIG+ VD+N++ E + + QSV + + + TI DSN+T LIA +V Sbjct: 392 ISALVIGIGMNVDANVISFEIFKNKVYSGQSVLKANNQANKLSLKTIIDSNVTTLIAALV 451 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKS 522 LF+FG +++GF+IT+ SI+ ++ ++ + + FI ++ K ++ Sbjct: 452 LFYFGTKSIKGFSITLIFSIIFTLIVTVAFTKFFVNFILKIPFLQTKPQLLGVKSKYIQK 511 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGI 579 S F ++ + + + + + + + N IDF G Sbjct: 512 YSRGYQSIFSKTDYFKIYKYSKWAPLIILGAAIIVFIAFAASYKNPASGLNLSIDFSSGT 571 Query: 580 QLGVLANRPVDL-------SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 L + N + L + + + Q N L + + Sbjct: 572 SLTISNNDQNFDLIDAKKGQKIIDYLNTQGLNSSNSQILLKPLNEQSSLYNIEVRTQSDI 631 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + T + + +++L+ +V + I+ + + I+ +RFKW + Sbjct: 632 TNQLRQITNNLTNNFSNLEITTYSISNEEAKKLVENAVVSIAIALLFVTIFTLLRFKWSY 691 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 +L I +L+ +I + I+F+ TA+ A LTLIGY+VND +V++D+++ K Sbjct: 692 SLSIILSLLFNIAMIFLLMIIARIQFSPTAIIAFLTLIGYTVNDTIVIFDKIKNIFKEIP 751 Query: 753 TS-----ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + R + K+I + + RS+ TS+ +++ + ++ S+ F+I M G+++ Sbjct: 752 HNDIYTPEKIRQVAHKAIKDAIKRSLLTSLTTLFTIIILLIFYQSIDIIFSITMLIGVLI 811 Query: 808 AASSSIFIAAPILLFIY--DWRAKNARI 833 + SS+FIA + + R K RI Sbjct: 812 GSYSSLFIATNLWIRFEIIRNRRKQKRI 839 >gi|126174992|ref|YP_001051141.1| preprotein translocase subunit SecD [Shewanella baltica OS155] gi|153001321|ref|YP_001367002.1| preprotein translocase subunit SecD [Shewanella baltica OS185] gi|160875990|ref|YP_001555306.1| preprotein translocase subunit SecD [Shewanella baltica OS195] gi|125998197|gb|ABN62272.1| protein-export membrane protein SecD [Shewanella baltica OS155] gi|151365939|gb|ABS08939.1| protein-export membrane protein SecD [Shewanella baltica OS185] gi|160861512|gb|ABX50046.1| protein-export membrane protein SecD [Shewanella baltica OS195] gi|315268186|gb|ADT95039.1| protein-export membrane protein SecD [Shewanella baltica OS678] Length = 616 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 162/522 (31%), Positives = 277/522 (53%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + RS L++E I Sbjct: 104 NLAPATPKWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D+ + + + D + + V Sbjct: 164 RYAGIRSNTTGIEIKFRDAESLASAERFLKSRSK--------DMVFTDASRGEDFALQAV 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S + Q+ A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 MSDVYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + +G +++ +V ++G H+ GA +F Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRLPAGSEVYQRREGGTVILKKEVMLTGDHITGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 D + +P V I+ D G F +VT+DNIGKP+A + + + Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSDVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394 Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 A LA +LRAG+L ++IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIQNG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A+V G+ +++LFM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 VQAMVWGMAVVLLFMLVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFTAI R+++ I K++K++ I Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI 616 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 94/241 (39%), Gaps = 6/241 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S R+ S+++ I + + + + ++ + Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I +GP + E I+ G+ ++ +L+++ + ++ F L A L ++ +G Sbjct: 436 IVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYR-GFGLIANIALTANLVMVVGV 494 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828 ++ F++ L + G + FA+ + GI + ++I I+ R Sbjct: 552 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRV 611 Query: 829 K 829 K Sbjct: 612 K 612 >gi|296327896|ref|ZP_06870432.1| protein-export membrane protein SecF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155030|gb|EFG95811.1| protein-export membrane protein SecF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 317 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 87/295 (29%), Positives = 148/295 (50%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + ++ + IS++ I SI + FT GLNYGIDF GG + N Sbjct: 1 MKTNLHVIKNIKIYLSISLVLVIFSIVIFFTKGLNYGIDFSGGNLFQLKYNGTTVTLNQI 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + ++ N + K + + + + + T+ + Sbjct: 61 NENLDKLAKELPQINSNSRKVQISDDGTIIVRVPEISENDKGKVLNNLKELGSYTLDKED 120 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VG I +L + I + I AI ++IYI +RF++ FA+G I +L+ DI +GF AL G Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVIYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 E + +AA+LT++GYS+ND +V+YDR+R+N+K +D+SIN+T RS+ T Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWILEQCMDESINQTAIRSLNT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 S+ SV+ + V+GG+ + +F + + GI+ SSIF+A P++ + + N Sbjct: 241 SVTTLFSVIAILVFGGASLKTFIMTLLIGILAGTYSSIFVATPVVYLLNKRKGNN 295 >gi|237654066|ref|YP_002890380.1| preprotein translocase subunit SecD [Thauera sp. MZ1T] gi|237625313|gb|ACR02003.1| protein-export membrane protein SecD [Thauera sp. MZ1T] Length = 621 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 180/517 (34%), Positives = 279/517 (53%), Gaps = 26/517 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + LL A P++L + LGLDLRGG H +LEVD + L Sbjct: 106 VVALNLLSASPSWLTSIQA---------LPMYLGLDLRGGVHFLLEVDMPGALVKRLDST 156 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + +LR+ ++ + + + + N + + F D+ +E + + D Sbjct: 157 TGDLRTLMRDKSVRHAGITREGNTVVIRFRDAAQREAGRRAIFDSTTDLQLVERDDA--- 213 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + ++ L+ + AI+Q++ + RI+++G++E IQ+ G+ RI++QL Sbjct: 214 ----ADDLKLVATLTPQAQQTMRDFAIKQNITTLHNRINELGVAEPVIQQQGAERIVVQL 269 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP------NNSKKGFMFGVRFLRDSDGNQYLVEDKV 247 PG QD ++ + +LG TA + V FG + G+ LV+ +V Sbjct: 270 PGVQDVAKAKDILGRTATLEVRMVDDTPGAIEQALAGSVPFGTELYNERGGSPLLVKKQV 329 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVL 303 ++G L A FD +T++P V ++ D GAR F +VTR+++GK + G V+ Sbjct: 330 VLTGDRLTDAQPGFDGQTNEPAVHLTLDAAGARIFRDVTRESVGKRMAILLFEKGKGEVV 389 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 TAPVI I G+ QISG + A +A +LRAGSL + I+EER VG LG+++I K Sbjct: 390 TAPVIRSEIGGGRVQISGRMSTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAENIQK 449 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G + + G + IV+FM Y GLV+ ++ N++L +ALLSLL ATLTLP IA + L Sbjct: 450 GFNSTLWGFLAIVVFMCGYYMLVGLVSSIALAANLLLLVALLSLLQATLTLPGIAAMALT 509 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+A+DSN+L+NERIREE R S ++ G+ RA+ TI DSNIT LIA + L FG G Sbjct: 510 LGMAIDSNVLINERIREELRNGASPQAAIAAGYDRAWDTILDSNITTLIAGIALLVFGSG 569 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 VRGFA+ L IL SMF+AI + R ++ FI ++ Sbjct: 570 PVRGFAVVHCLGILTSMFSAILVSRMLINFIYGRRRK 606 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 86/208 (41%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I VGP + E I+KG + +A++ Sbjct: 403 VQISGRMSTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAENIQKGFNSTLWGFLAIV 462 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + L + L ++ + +L L +AA+ +G +++ V++ Sbjct: 463 VFMCGYY-MLVGLVSSIALAANLLLLVALLSLLQATLTLPGIAAMALTLGMAIDSNVLIN 521 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ S + I + + +++ I+ + + V+G + FA+ Sbjct: 522 ERIREELR---NGASPQAAIAAGYDRAWDTILDSNITTLIAGIALLVFGSGPVRGFAVVH 578 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + S+I ++ ++ FIY R K Sbjct: 579 CLGILTSMFSAILVSRMLINFIYGRRRK 606 Score = 44.7 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 26/121 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L ++ GL+ LPNF + ++V Sbjct: 3 RYPLWKNLLIGLVLLWGLIYTLPNFYGEVPA-------------------------VQVS 37 Query: 62 EDDFV-NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 +D + LK GI + + F D+ + D + Sbjct: 38 SAKATLKLDTAATTDRIAGALKAAGIENTGIFSDATSVRARFKDTETQLRAKDVIEQTFN 97 Query: 121 G 121 Sbjct: 98 P 98 >gi|119476393|ref|ZP_01616744.1| protein-export membrane protein SecF [marine gamma proteobacterium HTCC2143] gi|119450257|gb|EAW31492.1| protein-export membrane protein SecF [marine gamma proteobacterium HTCC2143] Length = 296 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 96/289 (33%), Positives = 162/289 (56%), Gaps = 5/289 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I FM R + +S++ I SI L GLN+G+DF GG + V + LS +R+ +E Sbjct: 12 IPFMAGRKVAMILSLVLIIGSIASLALKGLNFGLDFTGGTLVEVGYSEVEPLSNIRNTIE 71 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 S + +F E + LVRL D + + E+V + ++ E VGP Sbjct: 72 SAGYKNAVVVHFGSETDILVRLPQGFSDELGE----ELVTALEKDFSGDIDLRRIEFVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ EL +G + ++++ +++YI RF+ F++GA++ L D+ TLG F+ F I+F+ Sbjct: 128 QVGDELKEQGGLAMLMALGLVMLYITFRFQLKFSVGAVSALAHDVIITLGVFSFFQIDFD 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AAVL +IGYS+ND +VV DR+R+N + + +ID S+ ETL R++ TS Sbjct: 188 LTVLAAVLAVIGYSLNDTIVVSDRIRENFRKIRKG-TATSVIDISLTETLARTLVTSFTT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + + + ++GG +I F+I + G+ V SSI++AA +LL + + Sbjct: 247 LLVLTALFIFGGELIHGFSIALLVGVFVGTYSSIYVAANVLLVLNISKK 295 >gi|312970503|ref|ZP_07784684.1| protein-export membrane protein SecD [Escherichia coli 1827-70] gi|310337152|gb|EFQ02290.1| protein-export membrane protein SecD [Escherichia coli 1827-70] gi|323170490|gb|EFZ56140.1| protein-export membrane protein SecD [Escherichia coli LT-68] gi|323972258|gb|EGB67468.1| protein-export membrane protein SecD [Escherichia coli TA007] gi|332098544|gb|EGJ03510.1| protein-export membrane protein SecD [Shigella boydii 3594-74] gi|332760688|gb|EGJ90976.1| protein-export membrane protein SecD [Shigella flexneri 4343-70] Length = 549 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 38 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 97 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 98 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 146 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 147 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 206 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 207 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 266 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 267 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 325 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 326 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 385 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 386 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 445 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 446 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 505 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 506 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 549 Score = 134 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + + ++++ I +K F L A + LI ++ +G +L Sbjct: 374 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 432 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 433 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 489 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 490 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 546 >gi|149375022|ref|ZP_01892795.1| protein-export membrane protein SecD [Marinobacter algicola DG893] gi|149360911|gb|EDM49362.1| protein-export membrane protein SecD [Marinobacter algicola DG893] Length = 624 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 156/522 (29%), Positives = 274/522 (52%), Gaps = 37/522 (7%) Query: 32 LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 P + + LGLDLRGG H +LEVD + V+ L+ S +++ L++E + Sbjct: 107 APSTPEWLESVGAGPMKLGLDLRGGVHFLLEVDMETAVDQRLEAMSGQIKRELREERVRY 166 Query: 89 FSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147 N+ I LSF D + D + E + + + Sbjct: 167 RGGDVEGNRSIVLSFRDESSRSEAFDLIRDQYNQFLLD--------EQTEEGEYLLVLSM 218 Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 S+ + + +A+EQ++ IR R++++G++E +QR G+ RI+++LPG QD + +++LG Sbjct: 219 SEAEVKSIQDYALEQNLTTIRNRVNELGVAEPLVQRQGADRIIVELPGVQDTAAAKRVLG 278 Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 TA + F RD+ + +E +V ++G +++ A FD + Sbjct: 279 ATANLEFRLEA-RQDASSADIETFPFRDNPNREARLEREVIVTGDNVSNAQQAFDENG-Q 336 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN------------------ 309 P V+I+ D +G TR+ IG+ +AV+ + Sbjct: 337 PQVNITMDSVGGDLMNRATRNAIGRRMAVLFIEYRTETEEVVVDGETRTVDNRVVEKGII 396 Query: 310 -----QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 Q+ +I+G +I A LA +LRAGSL + V+ER +G LG +I G Sbjct: 397 SLATIQSALGSSFRITGLDSIPEAAELALLLRAGSLAAPMYFVQERTIGPSLGQKNIDAG 456 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 +++ G VL++ +M+V Y +G++A+ ++ LN++L +A +S+L ATLTLP IAGIVL + Sbjct: 457 MMSVLLGFVLVLCYMVVYYRGFGVIANIALTLNLMLLIACMSILSATLTLPGIAGIVLTV 516 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ ERI+EE + +++ G+SRA+ +IFD+NIT L+ V+LF G G Sbjct: 517 GMAVDANVLIFERIKEELKSGIPPQSAINAGYSRAFVSIFDANITTLLVAVILFAMGSGP 576 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 V+GFA+T+ + IL SMF+ + + R+++ + ++++ + I Sbjct: 577 VKGFAVTLSIGILTSMFSGLMVSRSIVNLVYGGRQVEKLSIG 618 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 97/248 (39%), Gaps = 4/248 (1%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + + + ++ + + ++ L G + Sbjct: 368 IEYRTETEEVVVDGETRTVDNRVVEKGIISLATIQSALGSSFRITGLDSIPEAAELALLL 427 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + +GP + ++ I G++ V++ + +L Y+ + ++ F + A L Sbjct: 428 RAGSLAAPMYFVQERTIGPSLGQKNIDAGMMSVLLGFVLVLCYMVVYYR-GFGVIANIAL 486 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 L++ + ++ L +A ++ +G +V+ V++++R+++ +K + I + Sbjct: 487 TLNLMLLIACMSILSATLTLPGIAGIVLTVGMAVDANVLIFERIKEELK---SGIPPQSA 543 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 I+ + ++ + + + G + FA+ ++ GI+ + S + ++ I+ Sbjct: 544 INAGYSRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLSIGILTSMFSGLMVSRSIV 603 Query: 821 LFIYDWRA 828 +Y R Sbjct: 604 NLVYGGRQ 611 Score = 45.8 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 63/236 (26%), Gaps = 34/236 (14%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ + IG + ALPN P + Sbjct: 4 KYPLWKNLVIVIALVIGFVYALPNVFPDDFA---------------------VQITGARS 42 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 + L D L + K + +++ I D+ + V L + Sbjct: 43 STEVDQRILDRAVDALEA--KGIEVKESELQERDALI--RLNDAESQLRARPIVQEALGR 98 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174 LN+ P + + + + + A++Q +E + +I + Sbjct: 99 DYLVALNMAPSTPEWLESVGAGPMKLGLDLRGGVHFLLEVDMETAVDQRLEAMSGQIKRE 158 Query: 175 GISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228 E R I L + SR + + + + ++ Sbjct: 159 LREERVRYRGGDVEGNRSIVLSFRDESSRSEAFDLIRDQYNQFLLDEQTEEGEYLL 214 >gi|28211809|ref|NP_782753.1| preprotein translocase subunit SecF [Clostridium tetani E88] gi|28204251|gb|AAO36690.1| protein translocase subunit secF [Clostridium tetani E88] Length = 291 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 146/284 (51%), Gaps = 4/284 (1%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 GIS+ + + GLNYGIDFKGG + + N+ D V L+ Sbjct: 9 KTKIWFGISLAIMLLGLVFAIKDGLNYGIDFKGGTLVQIKMNKEFDKIEVEKILKKYTND 68 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 + + D + N + ++ + +K K + + E +G I +E Sbjct: 69 YTTNEARDKDNNIQLEIRSNSLKDEQIKPMFNEIKNKYKLKDED--LLSQESIGASIGKE 126 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L +K I+ ++I+ IAMLIY+ RF++ F L AI L+ DI T+ +A+F I N + +A Sbjct: 127 LRQKAILSLVIANIAMLIYVGFRFEFKFGLSAILALVHDILITISIYAIFQIPINSSFIA 186 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 AVLT++GYS+ND +VV+DR+R+N K + ++ + SI +T+ RS+ TS+ ++ Sbjct: 187 AVLTIVGYSINDTIVVFDRIRENSKRNRKANEV-EIANISIAQTMTRSINTSLTTLFTIA 245 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + FA+P+ G++ A SSIFIA+P+ Sbjct: 246 AVYIF-VPSVREFALPLLIGVICGAYSSIFIASPLWTIFRKKGK 288 >gi|300310570|ref|YP_003774662.1| preprotein translocase subunit SecF protein [Herbaspirillum seropedicae SmR1] gi|300073355|gb|ADJ62754.1| preprotein translocase subunit SecF protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 214 bits (544), Expect = 6e-53, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 163/303 (53%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS L + ++ LF+ GL++ I+F GG + V N+P D Sbjct: 1 MEFFRIKKDIPFMRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R ++E L D Q+F ++ ++RL Q G + +Q E V + P Sbjct: 61 LEKIRKSIEGLGYRDTLVQSFGTAQDVMIRLPAQAGVNASQQ--TEKVNAALKADDPDVR 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ EL G++ + + + ++IY+ RF+W FA+ A+ + DI LGF Sbjct: 119 LQRVEFVGPQVGDELAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDLIDKSINETL 769 FA F EF+LT +AA+L ++GYSVN+ VVV+DR+R+ + S ++++ +I T+ Sbjct: 179 FAFFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREAFRDRRFGKLSPPEVLNHAITSTM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R+V T + + VL M +GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 239 SRTVITHGSTEMMVLAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKRED 298 Query: 830 NAR 832 + Sbjct: 299 LIK 301 >gi|26417545|gb|AAM75416.1| secretion protein SecF [Pseudomonas putida] Length = 314 Score = 214 bits (544), Expect = 6e-53, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 161/287 (56%), Gaps = 5/287 (1%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R I++L ++ ++ + GLN+G+DF GG + + RP DL VR+ Sbjct: 13 MKTINFMGVRNVAFAITVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 72 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + + Q+F + LVR+ ++ +T++ E Sbjct: 73 ELVNSGFHEAVVQSFGATTDLLVRMPGDDPQLGSKVAEALQ----KAGGDNPATLKRVEF 128 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VGP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ TLG + F I Sbjct: 129 VGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQI 188 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ S + I+ S +TL R++ TS Sbjct: 189 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINVSTTQTLLRTIATS 247 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ +++ + +GG + F++ + G++ SSI+IA +L+++ Sbjct: 248 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 294 Score = 47.4 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 85/170 (50%), Gaps = 5/170 (2%) Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLL 408 VG +G + +G ++ L I++++ + K+ + A S+ +V++TL +LS Sbjct: 127 EFVGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFF 186 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY---STIFD 465 T L +A ++ IG +++ I+V +R+RE R + ++ S TI Sbjct: 187 QITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRKASLIENINVSTTQTLLRTIAT 246 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 S T L +LFF GG + GF++ + + ++ +++I I ++I++ Sbjct: 247 SVSTLLAIAALLFF-GGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWLN 295 >gi|332530977|ref|ZP_08406900.1| preprotein translocase subunit SecD [Hylemonella gracilis ATCC 19624] gi|332039588|gb|EGI75991.1| preprotein translocase subunit SecD [Hylemonella gracilis ATCC 19624] Length = 636 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 166/518 (32%), Positives = 277/518 (53%), Gaps = 16/518 (3%) Query: 16 CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD 75 I N + + + +++ + LGLDLRGG H +L+VD + + + Sbjct: 104 AASGYIVALNLISNTP--AWLASLRAAPMYLGLDLRGGVHFMLQVDMQAALTKKAESLAG 161 Query: 76 ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL 135 +LR+ L+++ I + + N I + + A + V D + Sbjct: 162 DLRTTLREKNIRHGGIARNGNTIEIRLRGTG---ADAAATAEATRRVLLDQFADLQLAES 218 Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195 + ++++ L + V A++Q++ + RI+++G++E IQ+ G+ RI++QLPG Sbjct: 219 NDGGDLKLTLSLKPAAMRLVQDQALKQNITTLHNRINELGVAEPVIQQQGADRIVVQLPG 278 Query: 196 EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-------SDGNQYLVEDKVE 248 QD ++ + +LG TA + V + + G + +G +V +V Sbjct: 279 VQDTAKAKDILGRTATLELRMVDESTEGRAAELGTGPVPFTSERYLERNGQAVIVRKQVV 338 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304 ++G +L A FD +TH+P V++ D GAR F +VTR+NIGK + G V+T Sbjct: 339 LTGENLTDAQPGFDSQTHEPTVNLVLDAKGARIFKDVTRENIGKRMAIILFEKGQGEVVT 398 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 APVI I G+ QISG + A A +LRAGSL + I+EER +G LG+D+I KG Sbjct: 399 APVIRGEIGGGRVQISGRMSTTEAADTALLLRAGSLAAPMEIIEERTIGPSLGADNISKG 458 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 ++ G V + FM + Y +G+ + ++ +N++L +A+LS+L ATLTLP +A + L + Sbjct: 459 FHSVTWGFVAVAAFMGIYYMLFGVFSAVALAVNLLLLVAVLSMLQATLTLPGMAAMALVL 518 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+A+D+N+L+NER+REE R S ++ G+ RA++TI DSN+T LIA + L FG G Sbjct: 519 GMAIDANVLINERVREELRNGASPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGTGP 578 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 VRGFA+ L I+ SMF+A+ R ++ +K Sbjct: 579 VRGFAVVHCLGIVTSMFSAVFFSRGLVNLWYGSRKKLK 616 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 84/212 (39%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I KG V +A+ Sbjct: 411 VQISGRMSTTEAADTALLLRAGSLAAPMEIIEERTIGPSLGADNISKGFHSVTWGFVAVA 470 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ I + F + + L +++ + ++ L +AA+ ++G +++ V++ Sbjct: 471 AFMGIYY-MLFGVFSAVALAVNLLLLVAVLSMLQATLTLPGMAAMALVLGMAIDANVLIN 529 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ S + I + +++ I+ L + +G + FA+ Sbjct: 530 ERVREELR---NGASPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVH 586 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GIV + S++F + ++ Y R K + Sbjct: 587 CLGIVTSMFSAVFFSRGLVNLWYGSRKKLKSV 618 Score = 42.0 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + +G + PNF ++ + A ++ LG ++ Sbjct: 3 RYPLWKYAIIVIALLVGAIYTAPNFFGEAPAVQVSPARATQKVDLG----------VQAR 52 Query: 62 EDDFVNG 68 +D + Sbjct: 53 VEDALKQ 59 >gi|304411828|ref|ZP_07393439.1| protein-export membrane protein SecD [Shewanella baltica OS183] gi|307303404|ref|ZP_07583159.1| protein-export membrane protein SecD [Shewanella baltica BA175] gi|304349688|gb|EFM14095.1| protein-export membrane protein SecD [Shewanella baltica OS183] gi|306913764|gb|EFN44186.1| protein-export membrane protein SecD [Shewanella baltica BA175] Length = 605 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 162/522 (31%), Positives = 277/522 (53%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + RS L++E I Sbjct: 93 NLAPATPKWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKI 152 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D+ + + + D + + V Sbjct: 153 RYAGIRTNTTGIEIKFRDAESLASAERFLKSRSK--------DMVFTDASRGEDFALQAV 204 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S + Q+ A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 205 MSDVYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 264 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + +G +++ +V ++G H+ GA +F Sbjct: 265 GATASIEFHMVDDKADPNAAQSGRLPAGSEVYQRREGGTVILKKEVMLTGDHITGAQPSF 324 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 D + +P V I+ D G F +VT+DNIGKP+A + + + Sbjct: 325 DQYS-RPQVSINLDAKGGTIFSDVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 383 Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 A LA +LRAG+L ++IVEER +G LG+++I G Sbjct: 384 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIQNG 443 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A+V G+ +++LFM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 444 VQAMVWGMAVVLLFMLVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 503 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 504 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 563 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFTAI R+++ I K++K++ I Sbjct: 564 AVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI 605 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 94/241 (39%), Gaps = 6/241 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S R+ S+++ I + + + + ++ + Sbjct: 365 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 424 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I +GP + E I+ G+ ++ +L+++ + ++ F L A L ++ +G Sbjct: 425 IVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYR-GFGLIANIALTANLVMVVGV 483 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + Sbjct: 484 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 540 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828 ++ F++ L + G + FA+ + GI + ++I I+ R Sbjct: 541 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRV 600 Query: 829 K 829 K Sbjct: 601 K 601 >gi|167623487|ref|YP_001673781.1| preprotein translocase subunit SecD [Shewanella halifaxensis HAW-EB4] gi|167353509|gb|ABZ76122.1| protein-export membrane protein SecD [Shewanella halifaxensis HAW-EB4] Length = 616 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 158/522 (30%), Positives = 269/522 (51%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + R+ L+ E I Sbjct: 104 NLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEALRKMSEAKVADFRTDLRAEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D+ + + D + + Sbjct: 164 RYAGIRNGAKGIEIKFRDAETLTKAENFLKSRSN--------DMVFVDKTVGDDYVLVAN 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 S+ + QV A++Q++ +R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 PSEAYLKQVKEEALQQNITTLRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 TA + FH V + G + G +++ V ++G H+ GA +F Sbjct: 276 SATASIEFHMVDQKADVQAAMSGRVPAGSELYQRRTGGPVVLKKAVMLTGDHIQGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA---------------- 305 D + +P V I+ D G F VT+DNIG P+A + T Sbjct: 336 DEYS-RPQVSINLDAKGGSIFSNVTKDNIGNPMATLFIEYKDTGEKNADGSVKMKKIEEV 394 Query: 306 -PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 V G+ + A LA +LRAG+L + IVEER +G LG ++I G Sbjct: 395 ISVATIQARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGQENIENG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+ ++++FM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 MQAMIWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFT I R+++ I K++K + I Sbjct: 575 AVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI 616 Score = 145 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 91/238 (38%), Gaps = 6/238 (2%) Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 ++ S+++ I + + + + ++ I Sbjct: 380 KNADGSVKMKKIEEVISVATIQARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEE 439 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 +GP + +E I G+ +I +LI++ + ++ F L A L ++ +G ++ Sbjct: 440 RTIGPSLGQENIENGMQAMIWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGVMSMI 498 Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + Sbjct: 499 PGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHEGYGNAFSTIA 555 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 ++ F++ L + G + FA+ + GI + + I I+ R K Sbjct: 556 DANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKK 613 Score = 40.1 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ +I IG A+PN + + V+ Sbjct: 4 KYPMWKNLMVIVIIAIGGFYAIPNLFGEDHAVQ----------------------VVATR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + L ++ L+S +GI V ++ + + + + ++ L Sbjct: 42 GAEVSASTLSTVNEVLKS----KGIAVKRSELENGQLLVRLNNGEEQLVAKEIISDAL 95 >gi|123443371|ref|YP_001007345.1| preprotein translocase subunit SecD [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090332|emb|CAL13198.1| protein-export membrane protein SecD [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 615 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 164/537 (30%), Positives = 291/537 (54%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P++L + + + LGLDLRGG H ++EVD D + + Sbjct: 100 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LRS L+++ I ++R++ N + + F D + +++ S L+ + Sbjct: 151 MDTLRSDLREKNIPYATVRKLDNYGVEVRFRDDKTRDDAI-----------SYLSPRHRD 199 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + + V+S + + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 200 LVIGSNGSNTLKAVMSDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNSNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 319 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 320 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKK 378 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 379 DANGRAVLVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 438 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM+V Y K+G++A ++ N++L + ++SLL Sbjct: 439 RTIGPTLGSQNITQGLEACLWGLAVSILFMVVYYRKFGVIASTALLANLVLIVGVMSLLP 498 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE + +++ ++ G+ A+S+I D+N+ Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYKNGRTIQQAIHEGYKGAFSSIVDANV 558 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 559 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 615 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 440 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YKNGRTIQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 556 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 612 Score = 39.7 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 29/114 (25%), Gaps = 26/114 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ +GLL ALPN + + Sbjct: 4 RYPLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115 L D L + I S+ I F D + + + Sbjct: 42 GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREAL 91 >gi|167470051|ref|ZP_02334755.1| protein-export membrane protein SecD [Yersinia pestis FV-1] Length = 657 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 163/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P++L + + + LGLDLRGG H ++EVD D + + Sbjct: 142 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 192 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LR+ L+++ I ++R++ N + + F D + + + ++ + Sbjct: 193 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 241 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + + V+S + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 242 LVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 301 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 302 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 361 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 362 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKK 420 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 421 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 480 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM+V Y K+G++A ++ N++L + ++SLL Sbjct: 481 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 540 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+NI Sbjct: 541 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 600 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 601 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 657 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 482 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 540 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 541 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 597 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 598 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 654 Score = 39.3 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + W ++ ++ +GLL ALPN + + Sbjct: 46 RYSLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 83 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 L D L + I S+ I F D + + + L Sbjct: 84 GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREALVEAL 137 >gi|238765178|ref|ZP_04626110.1| Protein-export membrane protein secD [Yersinia kristensenii ATCC 33638] gi|238696612|gb|EEP89397.1| Protein-export membrane protein secD [Yersinia kristensenii ATCC 33638] Length = 600 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 162/524 (30%), Positives = 286/524 (54%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ PS + K + LGLDLRGG H ++EVD D + + D LRS L+++ I Sbjct: 89 NLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRSDLREKNI 148 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R++ N + + F D + +++ ++ + ++ + + Sbjct: 149 PYATVRKLDNYGVEVRFRDDKTRDDAISYLSSRHR-----------DLVIGSNGSNTLKA 197 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++ Sbjct: 198 VMSDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 257 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N G +G ++ +V ++G H+ +T++ Sbjct: 258 LGATATLEFRLVNSNVDATVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSS 317 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 D + V+IS D G T+DNIGKP+A + Sbjct: 318 TDEYN-QAQVNISLDSAGGAVMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 376 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LGS +I Sbjct: 377 VINIANIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIT 436 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GL + +LFM+V Y K+G++A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 437 QGLEACLWGLAVSILFMVVYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 496 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+N+T LI ++L+ G Sbjct: 497 LTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVG 556 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 557 TGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINKLSI 600 Score = 139 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 425 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 483 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 484 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 540 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G++ + ++I I+ +Y + N Sbjct: 541 ANVTTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINK 597 >gi|238783638|ref|ZP_04627659.1| Protein-export membrane protein secD [Yersinia bercovieri ATCC 43970] gi|238715516|gb|EEQ07507.1| Protein-export membrane protein secD [Yersinia bercovieri ATCC 43970] Length = 604 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 160/537 (29%), Positives = 290/537 (54%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P++L + + + LGLDLRGG H ++EVD D + + Sbjct: 89 VIALNLAPATPSWLARLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LR+ L+++ I ++R++ N + + F D + +++ ++ + Sbjct: 140 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKTRDDAISYLSSRHR-----------D 188 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + + V++ + + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 189 LVIGSNGSNTLKAVMTDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 248 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDASVAATGRVPGDSEVKNTREGRPVVLYKRV 308 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 309 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSLMSNFTKDNIGKPMATLFVEYKDSGKK 367 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 368 DANGRAILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 427 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM++ Y K+G++A ++ N++L + ++SLL Sbjct: 428 RTIGPTLGSQNITQGLEACLWGLAVSILFMVIYYRKFGVIASTALLANLVLIVGVMSLLP 487 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+N+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANV 547 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ I ++ F + A T L+ ++ +G +L Sbjct: 429 TIGPTLGSQNITQGLEACLWGLAVSILFMVIYYR-KFGVIASTALLANLVLIVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G++ + ++I I+ +Y + N Sbjct: 545 ANVTTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|253990961|ref|YP_003042317.1| preprotein translocase subunit SecF [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782411|emb|CAQ85575.1| Protein-export membrane protein SecF [Photorhabdus asymbiotica] Length = 322 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 95/301 (31%), Positives = 169/301 (56%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR GIS+L + S+ ++ T G N+G+DF GG + + ++ Sbjct: 5 YTVEQLNYGRKVYDFMRWDNVAFGISLLLLVASVFVMATRGFNWGLDFTGGTVIEIKLSK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R NL D QNF ++ +VR+ G + + +++K + Sbjct: 65 PADLDKMRDNLAKAGFKDPLLQNFGSSRDVMVRMPPVTG-AANEELSKKVIKVINDTVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +++ EIVGP + EL + G + ++ + I +LIY+ RF+W ALGA+ L D+ T Sbjct: 124 DASVNRVEIVGPSVGAELAQNGAMALLAALICILIYVGFRFEWRLALGAVLALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + S+ ++++ S+ + Sbjct: 184 LGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLLVVLMLYIFGGAMLKGFSLAMLIGVSIGTISSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|240127576|ref|ZP_04740237.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae SK-93-1035] gi|268685960|ref|ZP_06152822.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae SK-93-1035] gi|268626244|gb|EEZ58644.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae SK-93-1035] Length = 617 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 166/506 (32%), Positives = 278/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++E I Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N +T+ D+ + ++ + + I + Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKALPQLLKLFPEA------------TLNSEGSNIVLA 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +++V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K + L+ +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD P V +S D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ +ISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + FM+V Y G + ++ N++ + +LS + ATLTLP +A + L +G+A+DSN+L+ Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++GF A++TI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 ILISM++++ + RA++ ++ Sbjct: 571 GILISMYSSVVVFRALVNLWYGRRRK 596 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 82/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I KG + + Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ + ++ + L +I +G + L +AA+ +G +++ V++ Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + V+G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+++ SS+ + ++ Y R K Sbjct: 569 CLGILISMYSSVVVFRALVNLWYGRRRK 596 Score = 38.5 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + + +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIVFTIAVVAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + LK GI M + N + + F D+ + D + L Sbjct: 47 ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95 >gi|157164195|ref|YP_001467049.1| preprotein translocase subunit SecF [Campylobacter concisus 13826] gi|112800443|gb|EAT97787.1| protein-export membrane protein SecF [Campylobacter concisus 13826] Length = 323 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 163/285 (57%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FMR RF + SI + SI LL T GLNYGIDF GG + + + L +R Sbjct: 10 YDFMRFRFVSLAFSIFLFVGSIFLLATKGLNYGIDFSGGTLIQLKYDTKAPLDKIRDAFG 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + ++ + G ++ V G S T + K+I + ++ +IVGP Sbjct: 70 TNEVLKNASVTEFGSEDEAVIRFS--GSSSNLTGDIGTEIKQILKDTGNFEVRRVDIVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL +KG++ + IS I +L+YI RF+W FAL AI T I DI T+G +LF I+ N Sbjct: 128 KVGDELRQKGLMALGISLIGVLLYITFRFEWRFALAAIATEIHDIVITVGAISLFDIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AAVLT++GYS+ND ++++DR+R+ +K + +I++S++ TL R++ TS Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKE-SKRTDIEGVINESVSATLSRTILTSATT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 ++V+ + ++GG +I F+ + GIV+ SSI+I++P L++ Sbjct: 247 MMTVVVLFLFGGDMIHGFSFILIVGIVIGTISSIYISSPFLIWFK 291 >gi|118497684|ref|YP_898734.1| preprotein translocase subunit SecF [Francisella tularensis subsp. novicida U112] gi|194323656|ref|ZP_03057432.1| protein-export membrane protein SecF [Francisella tularensis subsp. novicida FTE] gi|208779748|ref|ZP_03247092.1| protein-export membrane protein SecF [Francisella novicida FTG] gi|118423590|gb|ABK89980.1| preprotein translocase, subunit F, membrane protein [Francisella novicida U112] gi|194322020|gb|EDX19502.1| protein-export membrane protein SecF [Francisella tularensis subsp. novicida FTE] gi|208744203|gb|EDZ90503.1| protein-export membrane protein SecF [Francisella novicida FTG] Length = 314 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 84/300 (28%), Positives = 159/300 (53%), Gaps = 3/300 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 +I F+ + + S+L + S+ +FT GLN G+DF GG Q+ + + Sbjct: 1 MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648 S + + + + G+ N + + + + + ++ Sbjct: 61 DSETMAKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVENSLD 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + +Q+ +GP++ +EL G++ +I++ + +LIYI RF+ F + A L+ D L Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N + + S +++++SIN+T Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNRSINDT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TS + V+ + ++GGS + +F++ + GIVV SSI++A + + + R Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 299 >gi|326404385|ref|YP_004284467.1| protein-export membrane protein SecD [Acidiphilium multivorum AIU301] gi|325051247|dbj|BAJ81585.1| protein-export membrane protein SecD [Acidiphilium multivorum AIU301] Length = 526 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 186/526 (35%), Positives = 307/526 (58%), Gaps = 13/526 (2%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 L + C IG+L+ LPN + + + +P +I LGLDLRGGS+L++++D + Sbjct: 6 RLKTTLIVLFCAIGVLLTLPNLIKRPVPG-----IPWPQIHLGLDLRGGSYLLMQIDMNA 60 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE--NIADKVTLFLQGV 122 V L +DE+R L + IG + + F + E + + + V Sbjct: 61 VVKEQLANLTDEVRHALLQADIGYTDLGGDVAARRVQFNLVKPGEAPKVRQILAKLVSPV 120 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 + + + ++ LS+ + + AI QS+ II +RID G+ + I Sbjct: 121 AAA--GGAPDLDVKVSDAGAATLTLSRPALIAKQTQAIAQSITIIGRRIDGSGVVDPQIA 178 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL----PNNSKKGFMFGVRFLRDSDG 238 R G+ +I+IQLPG DP+++++LLG TA M+FH V P + + D G Sbjct: 179 RQGADQIVIQLPGVSDPNQIKKLLGKTAHMTFHMVAEDVNPETKTPPPGVEILPMSDGSG 238 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 + + +V + G L A A DP++ + VV+ +F+ +GAR+F ++T N+GK A+ L Sbjct: 239 RKLAIRSRVAVDGADLTNAQAGQDPQSGQWVVNFTFNSVGARKFADITTHNVGKLFAIEL 298 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 D +++ APVI I G+ QISG+FT ++A LA +LRAG+LP L +VE+++VG +LG+ Sbjct: 299 DRKIIEAPVIRTPIVGGRGQISGSFTAKSASDLALLLRAGALPAPLKVVEQQSVGPELGA 358 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 D+I G ++ G VL++ FM YG +G A+ ++ +N++L +A+LSL+GATLTLP +A Sbjct: 359 DAIRAGIVSLAVGFVLVITFMASFYGLFGWFANIALVVNLLLLIAVLSLMGATLTLPGMA 418 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GI+L +G+AVDSN+L+NER+REE + + +L+ G+ RAY TI DSN+T L+A ++LF Sbjct: 419 GILLTLGMAVDSNVLINERVREEVKLGRKPLAALEAGYKRAYGTIIDSNVTTLLAHIMLF 478 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 FG VRGFA+T+ + I+ ++FT+ +VR + ++ ++ Sbjct: 479 IFGSPPVRGFAVTICVGIITTLFTSTVLVRLITARWYVARRPAALP 524 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 4/176 (2%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 + VGP++ + IR GIV + + + ++ ++ + F A L++++ + +L Sbjct: 349 QQSVGPELGADAIRAGIVSLAVGFVLVITFMASFYGL-FGWFANIALVVNLLLLIAVLSL 407 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G L +A +L +G +V+ V++ +R+R+ +KL ++ G + Sbjct: 408 MGATLTLPGMAGILLTLGMAVDSNVLINERVREEVKLGRK---PLAALEAGYKRAYGTII 464 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +++ ++ + + ++G + FA+ + GI+ +S + I Y R Sbjct: 465 DSNVTTLLAHIMLFIFGSPPVRGFAVTICVGIITTLFTSTVLVRLITARWYVARRP 520 >gi|238791404|ref|ZP_04635042.1| Protein-export membrane protein secD [Yersinia intermedia ATCC 29909] gi|238729020|gb|EEQ20536.1| Protein-export membrane protein secD [Yersinia intermedia ATCC 29909] Length = 615 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 159/524 (30%), Positives = 286/524 (54%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ PS + K + LGLDLRGG H ++EVD D + + D LR+ L+++ I Sbjct: 104 NLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R++ N + + F D + +++ ++ + ++ + + Sbjct: 164 PYATVRKLDNYGVEVRFRDDKTRDDAVSYLSSRHR-----------DLVIGSNGSNTLKA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++ Sbjct: 213 VMTDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N G +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNSNVDASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D + V+IS D G T+DNIGKP+A + + Sbjct: 333 TDEYN-QAQVNISLDSAGGSLMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 391 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q+ +I+G A L+ +LRAG+L + IVEER +G LGS +I Sbjct: 392 VINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIT 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GL + +LFM++ Y K+G++A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 452 QGLEACLWGLAVSILFMVIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+N+T LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEEFRNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 572 TGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINKLSI 615 Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ I ++ F + A T L+ ++ +G +L Sbjct: 440 TIGPTLGSQNITQGLEACLWGLAVSILFMVIYYR-KFGVIASTALLANLVLIVGVMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEFR---NGRTIQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G++ + ++I I+ +Y + N Sbjct: 556 ANVTTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINK 612 Score = 40.1 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 26/114 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ IGLL ALPN + + Sbjct: 4 RYPLWKYLMLIVVIFIGLLYALPNLYGEDPA---------------------VQIT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115 L D L + I S+ I F D + + + Sbjct: 42 GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFKDPDVQLRAREAL 91 >gi|283479340|emb|CAY75256.1| Protein-export membrane protein secF [Erwinia pyrifoliae DSM 12163] Length = 337 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 S + FMR IS + I ++ ++ G N+G+DF GG + + + Sbjct: 20 HSVEQMNHGRKVYDFMRWDKLAFIISGILLIVAVAIIGVRGFNWGLDFTGGTVIEINLEQ 79 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL ++R +L+ + QNF ++ +VR+ G+ + +++ Sbjct: 80 PADLDMMRGSLQKAGFAEPQVQNFGSSRDVMVRMAPAEGN-AGEALGSKVLGIVNEATGQ 138 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+L YI RF+W ALG + L D+ T Sbjct: 139 NATVKRIEFVGPSVGSDLAQAGGMALLSALIAILFYIGFRFEWRLALGTVLALAHDVVIT 198 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+NDK+VV DR+R+N + S+ D+ + S+ + Sbjct: 199 MGLLSLFQIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 257 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS+ VL + ++GG+++ F++ M GI + SSI++++ + L + R Sbjct: 258 TLSRTIITSVTTLAMVLILFIFGGALLQGFSLTMLIGITIGTISSIYVSSALALKLGMKR 317 Query: 828 A 828 Sbjct: 318 E 318 >gi|333010850|gb|EGK30276.1| protein-export membrane protein SecD [Shigella flexneri K-272] gi|333021349|gb|EGK40602.1| protein-export membrane protein SecD [Shigella flexneri K-227] Length = 549 Score = 214 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 170/537 (31%), Positives = 296/537 (55%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 34 VVALNLAPATPCWLAAIHAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQN 84 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LRS L+++GI ++R+ N ++++F D++ ++ ++ Sbjct: 85 IDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPD 133 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + ++ V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++ Sbjct: 134 LVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVE 193 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N + G + +G ++ +V Sbjct: 194 LPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRV 253 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302 ++G H+ +T++ + ++P V+IS D G T+DNIGKP+A + Sbjct: 254 ILTGDHITDSTSS-QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKK 312 Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 313 DANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEE 372 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LG +I +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL Sbjct: 373 RTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLP 432 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATL++P IAGIVL + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NI Sbjct: 433 GATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANI 492 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 493 TTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 549 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + + ++++ I +K F L A + LI ++ +G +L Sbjct: 374 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 432 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 433 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 489 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 490 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 546 >gi|237747211|ref|ZP_04577691.1| preprotein translocase SecD subunit [Oxalobacter formigenes HOxBLS] gi|229378562|gb|EEO28653.1| preprotein translocase SecD subunit [Oxalobacter formigenes HOxBLS] Length = 623 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 159/511 (31%), Positives = 279/511 (54%), Gaps = 21/511 (4%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 N LP + ++ ++ + LGLDLRGG H +++VD + +N +Q R+ Sbjct: 108 FSIAFNLLPNTP--QWLQSLHALPMYLGLDLRGGVHFLMQVDVEAAINSRIQGLQISARN 165 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L++ I + + ++ + + F D + ++ + + + + T Sbjct: 166 LLRENNIRYSGLVRARDSVEMQFNDPQTRQRAEKVLKSQMSDITVR----------EETG 215 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 ++ + LS I QV ++++Q++ + +R++++G++E IQ+ G+ RI++QLPG QD Sbjct: 216 SDKLILTLSPEAIKQVKENSVKQNIATLSKRVNELGVNEPVIQQQGADRIVVQLPGVQDV 275 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKK-----GFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254 SR + ++G TA + V + ++ G R G ++ + ++G ++ Sbjct: 276 SRAKDIIGRTATLEVRMVDESITRGTEESVAVPLGSELFRQGKGTPVILYKEPVLTGEYI 335 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQA 311 + A+A+FD +P V I + G R+ + TR IGK +A+VL + + + Sbjct: 336 SNASASFDQYQ-QPAVSIDLNGDGGRKMRQATRGKIGKLMAIVLFEKGKGEVLTVASIRD 394 Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371 K QI+G T E A LA +LRAGSL ++I+EER +G LG+++I KG + + G Sbjct: 395 ELGSKFQITGMDTPEAATDLALLLRAGSLAAPMHIIEERTIGPQLGAENITKGFFSTLYG 454 Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431 V + +FMI+ Y +G + ++ +NV+L +A+LSL+ TLTLP IA I L +G+A+DSN Sbjct: 455 FVAVSIFMILYYLVFGFFSVIALSVNVLLLIAILSLMQVTLTLPGIAAIALALGMAIDSN 514 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +L+NERIREE R N S ++ GF A++TI DSN+T LIA + L FG G VRGFA+ Sbjct: 515 VLINERIREELRANSSPQSAIANGFGHAWATILDSNVTTLIAGLALLIFGSGPVRGFAVV 574 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 + I+ S+F+++ + R + +K + Sbjct: 575 HVIGIMTSLFSSVFVSRGLANLWYGRRKKLT 605 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 88/205 (42%), Gaps = 4/205 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G + + + + I +GP++ E I KG + +A+ I++ Sbjct: 403 TGMDTPEAATDLALLLRAGSLAAPMHIIEERTIGPQLGAENITKGFFSTLYGFVAVSIFM 462 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + + F ++ L +++ + +L + L +AA+ +G +++ V++ +R+ Sbjct: 463 ILYY-LVFGFFSVIALSVNVLLLIAILSLMQVTLTLPGIAAIALALGMAIDSNVLINERI 521 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + S + I + +++ I+ L + ++G + FA+ G Sbjct: 522 REELRANS---SPQSAIANGFGHAWATILDSNVTTLIAGLALLIFGSGPVRGFAVVHVIG 578 Query: 805 IVVAASSSIFIAAPILLFIYDWRAK 829 I+ + SS+F++ + Y R K Sbjct: 579 IMTSLFSSVFVSRGLANLWYGRRKK 603 Score = 44.7 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 21/119 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L G++ LPNF +S + S +I Sbjct: 3 RYPLWKYLLIVAAILFGIIYTLPNFFGESPAVQISSIRSTVKI----------------- 45 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + L+ F + + + + F + + + + L Sbjct: 46 ----DTQMMNQVEQILKDNNVPVDGIYFDASGMHSTVKVRFTTTDTQFRAKEILESKLN 100 >gi|156973361|ref|YP_001444268.1| preprotein translocase subunit SecD [Vibrio harveyi ATCC BAA-1116] gi|156524955|gb|ABU70041.1| hypothetical protein VIBHAR_01048 [Vibrio harveyi ATCC BAA-1116] Length = 607 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 153/524 (29%), Positives = 272/524 (51%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + + RS L++ I Sbjct: 93 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 152 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + + + + D + + Sbjct: 153 RYRAIRPSGTEGVEVLLRNEEQLAEAKATLEKN--------HPDMNFVDSDSNGRYALIA 204 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 205 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264 Query: 206 LGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G D DG +++ +V + G + ++ Sbjct: 265 LGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD-ASS 323 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + ++ NIGK +A V Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILDKHEE 383 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A + G+V ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 444 MGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 503 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GAV+GFA+T+ + IL SMFTAI R ++ I K++ + I Sbjct: 564 TGAVKGFAVTLSIGILTSMFTAIVGTRCIVNLIYGGKRVDKLSI 607 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I +A Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G + FA Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I I+ IY + Sbjct: 572 VTLSIGILTSMFTAIVGTRCIVNLIYGGKR 601 >gi|238795569|ref|ZP_04639084.1| Protein-export membrane protein secD [Yersinia mollaretii ATCC 43969] gi|238720688|gb|EEQ12489.1| Protein-export membrane protein secD [Yersinia mollaretii ATCC 43969] Length = 604 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 159/524 (30%), Positives = 286/524 (54%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ PS + K + LGLDLRGG H ++EVD D + + D LR+ L+++ I Sbjct: 93 NLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R++ N + + F D + +++ ++ + ++ + + Sbjct: 153 PYATVRKLDNYGVEVRFRDDKTRDDAISYLSSRHR-----------DLVIGSNGSNTLKA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++ Sbjct: 202 VMTDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N G +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNSNVDASVAATGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D + V+IS D G T+DNIGKP+A + + Sbjct: 322 TDEYN-QAQVNISLDSAGGSLMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 380 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q+ +I+G A L+ +LRAG+L + IVEER +G LGS +I Sbjct: 381 VINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIT 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GL + +LFM++ Y K+G++A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 441 QGLEACLWGLAVSILFMVIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+N+T LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 561 TGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ I ++ F + A T L+ ++ +G +L Sbjct: 429 TIGPTLGSQNITQGLEACLWGLAVSILFMVIYYR-KFGVIASTALLANLVLIVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 545 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|56708192|ref|YP_170088.1| preprotein translocase subunit SecF [Francisella tularensis subsp. tularensis SCHU S4] gi|89256209|ref|YP_513571.1| preprotein translocase subunit SecF [Francisella tularensis subsp. holarctica LVS] gi|110670663|ref|YP_667220.1| preprotein translocase subunit SecF [Francisella tularensis subsp. tularensis FSC198] gi|115314676|ref|YP_763399.1| preprotein translocase subunit SecF [Francisella tularensis subsp. holarctica OSU18] gi|134302104|ref|YP_001122073.1| preprotein translocase subunit SecF [Francisella tularensis subsp. tularensis WY96-3418] gi|167009754|ref|ZP_02274685.1| protein-export membrane protein SecF [Francisella tularensis subsp. holarctica FSC200] gi|224457295|ref|ZP_03665768.1| preprotein translocase subunit SecF [Francisella tularensis subsp. tularensis MA00-2987] gi|254367535|ref|ZP_04983561.1| preprotein translocase, subunit F [Francisella tularensis subsp. holarctica 257] gi|254369203|ref|ZP_04985215.1| RND superfamily resistance-nodulation-cell division antiporter [Francisella tularensis subsp. holarctica FSC022] gi|254370679|ref|ZP_04986684.1| RND superfamily resistance-nodulation-cell division antiporter [Francisella tularensis subsp. tularensis FSC033] gi|254875004|ref|ZP_05247714.1| preprotein translocase subunit secF [Francisella tularensis subsp. tularensis MA00-2987] gi|56604684|emb|CAG45747.1| preprotein translocase, subunit F, membrane protein [Francisella tularensis subsp. tularensis SCHU S4] gi|89144040|emb|CAJ79288.1| preprotein translocase, subunit F, membrane protein [Francisella tularensis subsp. holarctica LVS] gi|110320996|emb|CAL09130.1| preprotein translocase, subunit F, membrane protein [Francisella tularensis subsp. tularensis FSC198] gi|115129575|gb|ABI82762.1| RND superfamily resistance-nodulation-cell division antiporter [Francisella tularensis subsp. holarctica OSU18] gi|134049881|gb|ABO46952.1| protein-export membrane protein SecF [Francisella tularensis subsp. tularensis WY96-3418] gi|134253351|gb|EBA52445.1| preprotein translocase, subunit F [Francisella tularensis subsp. holarctica 257] gi|151568922|gb|EDN34576.1| RND superfamily resistance-nodulation-cell division antiporter [Francisella tularensis subsp. tularensis FSC033] gi|157122153|gb|EDO66293.1| RND superfamily resistance-nodulation-cell division antiporter [Francisella tularensis subsp. holarctica FSC022] gi|254841003|gb|EET19439.1| preprotein translocase subunit secF [Francisella tularensis subsp. tularensis MA00-2987] gi|282159408|gb|ADA78799.1| preprotein translocase subunit SecF [Francisella tularensis subsp. tularensis NE061598] gi|332678397|gb|AEE87526.1| Protein-export membrane protein SecF [Francisella cf. novicida Fx1] Length = 314 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 84/300 (28%), Positives = 159/300 (53%), Gaps = 3/300 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 +I F+ + + S+L + S+ +FT GLN G+DF GG Q+ + + Sbjct: 1 MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648 S + + + + G+ N + + + + + ++ Sbjct: 61 DSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVENSLD 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + +Q+ +GP++ +EL G++ +I++ + +LIYI RF+ F + A L+ D L Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N + + S +++++SIN+T Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNRSINDT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TS + V+ + ++GGS + +F++ + GIVV SSI++A + + + R Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 299 >gi|83311612|ref|YP_421876.1| preprotein translocase subunit SecF [Magnetospirillum magneticum AMB-1] gi|82946453|dbj|BAE51317.1| Preprotein translocase subunit SecF [Magnetospirillum magneticum AMB-1] Length = 319 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 170/299 (56%), Gaps = 4/299 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL-ANRPVD 590 +P F+R R++ I+ + I S + G N+GIDF GGI L P D Sbjct: 6 RFLPHGTKYDFIRYRWFAFCITAVLIIGSFASIAIKGFNFGIDFAGGILLEAQSTTGPAD 65 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R+ L L +G++S Q F ++ + + + K + T Sbjct: 66 LHGMRTTLGHLGLGEVSLQEFGTTGRDVMIRVQRQEGDEKTQ--MAALSKVKASLGEGFT 123 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + EIVGPK+ EL+R G++ V+++ A+ +Y+W RF+W F +GA+ + D+ T G Sbjct: 124 YRRVEIVGPKVGGELVRDGVLAVVLALGAIALYVWFRFEWQFGVGALVSTFHDVITTFGL 183 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F++ G+EFNLT VAA+LT+ GYSVND VV YDR+R+N++ + ++S DL++ ++NETL Sbjct: 184 FSITGLEFNLTTVAAILTIAGYSVNDTVVEYDRVRENLRKF-KTMSLYDLLNLAVNETLA 242 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T F++VL + GG V+ F+I M +G+++ SSI++A P+L++ K Sbjct: 243 RTILTVSTVFVTVLALLFVGGEVLRGFSIAMLWGLIIGTFSSIYVAMPMLIYFNLRTGK 301 >gi|260771413|ref|ZP_05880338.1| protein-export membrane protein SecD [Vibrio furnissii CIP 102972] gi|260613539|gb|EEX38733.1| protein-export membrane protein SecD [Vibrio furnissii CIP 102972] gi|315180994|gb|ADT87908.1| protein-export membrane protein SecD [Vibrio furnissii NCTC 11218] Length = 617 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 157/536 (29%), Positives = 282/536 (52%), Gaps = 42/536 (7%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L + P++L + LGLDLRGG H ++EVD D + + Sbjct: 100 IVALNLAASTPSWLESIGAA---------PMKLGLDLRGGVHFLMEVDMDAAMEKLIGQQ 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + RS L++E I ++R + N + ++ D+ E + + D Sbjct: 151 EEAFRSELREEKIRYRAIRPLANSVEITLRDAEQVEQARKALESKHR--------DMTFV 202 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 T ++ ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++L Sbjct: 203 PSGTEGRFTLTATFTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVEL 262 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVE 248 PG QD +R +++LG TA + F +V G D G +++ +V Sbjct: 263 PGVQDTARAKEILGATATLEFREVDDQADLAAAAAGRVPAGSEIKLDRSGRPVVLKKRVI 322 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------ 302 + G + ++ + +P V+IS D G + ++ NIGK +A V Sbjct: 323 LGGSSITD-ASSSTDEYGRPQVNISLDSEGGSKMSAFSKKNIGKLMATVFAEYKDSGEKT 381 Query: 303 ------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 + Q+ +I+G ++ A LA +LRAG+L ++IVEER Sbjct: 382 AEGKVILAKHEEVINQATIQSALGRNFRITGINSVAEAHNLALLLRAGALIAPISIVEER 441 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG- 409 +G +G +I G A + GL+ +++F + Y K+GL+A+ ++ N++L + ++S++ Sbjct: 442 TIGPSMGQQNIDMGIQACIWGLLAVMIFTALYYRKFGLIANVALAANLVLIIGVMSMIPG 501 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT Sbjct: 502 ATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADANIT 561 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LI ++LF G GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 562 TLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRINKLSI 617 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 98/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + + N ++ L R G + + + Sbjct: 371 FAEYKDSGEKTAEGKVILAKHEEVINQATIQSALGRNFRITGINSVAEAHNLALLLRAGA 430 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++I+ + ++ F L A L ++ Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGLLAVMIFTALYYR-KFGLIANVALAANL 489 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRNPQQAIHQ 546 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLL 606 Query: 824 YDWRAKNA 831 Y + N Sbjct: 607 YGGKRINK 614 Score = 39.3 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ I L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVVFAIAISALYALPNIYGEDPAIQVTGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + L + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTKALDTAHLSHKSIALEDGSILVRFNDTDTQISARDVISEAL 95 >gi|15603991|ref|NP_220506.1| preprotein translocase subunit SecF [Rickettsia prowazekii str. Madrid E] gi|6647857|sp|Q9ZE34|SECF_RICPR RecName: Full=Protein-export membrane protein secF gi|3860682|emb|CAA14583.1| PROTEIN-EXPORT MEMBRANE PROTEIN SECF (secF) [Rickettsia prowazekii] gi|292571707|gb|ADE29622.1| Protein-export membrane protein secF [Rickettsia prowazekii Rp22] Length = 311 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + +P+ I FM + SI+ S+ S+ + + N+GIDF GGI + V Sbjct: 1 MQIYPLRFVPNKIDFDFMNFKKVSYSFSIILSLISLIWISIYKFNFGIDFVGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R+ L +L+IG++ QNF E++ +R + + + Sbjct: 61 DQAPDLPKMRAVLSALEIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIDIIKTSLRNNF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S +A+++YI +RF+WYF G + L+ D+ Sbjct: 120 PYNFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIGVRFEWYFGFGILIALVHDVI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ SI Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL + Sbjct: 239 NETLSRTILTVITTLLANLALILFGGKAIHSFSVLVFFGIIAGTYSSIFISAPILTMFAN 298 Query: 826 WRAKNA 831 + Sbjct: 299 RKFNKK 304 >gi|293390420|ref|ZP_06634754.1| protein-export membrane protein SecF [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950954|gb|EFE01073.1| protein-export membrane protein SecF [Aggregatibacter actinomycetemcomitans D7S-1] Length = 333 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 97/307 (31%), Positives = 167/307 (54%), Gaps = 6/307 (1%) Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 + + + ++FM+ R WG S++ S+ +FT G N+G+DF GG+ + Sbjct: 17 NRSQSIQEIQGIKLPFRLVEFMKYRMWGYLASVIIIAVSLFFVFTKGFNWGLDFTGGVVV 76 Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 ++P DL +RS L I Q G ++ ++RL ++ + VK+ Sbjct: 77 DTHFSQPADLEKIRSTLVQNGIESPLVQTTGGVRDVMIRLPATD-----NAQIGDNVKRM 131 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 ++ + I++TE VGP + EL + I + + I +L+Y+ IRF+W A+G + +L Sbjct: 132 LSTLDSDIQIRSTEFVGPNVGEELTQGAIYATLTTLIMLLLYVGIRFEWRLAVGGVLSLA 191 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 D+ TLG F+ IE +LT +AA+L+++GYS+ND +VV+DR+R+N + S D+I Sbjct: 192 HDVIVTLGAFSYLQIEMDLTFIAAILSVVGYSLNDSIVVFDRVRENFRKIRRIASI-DII 250 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + S+ +TL R++ TS+ I V+ + V+GG I SF++ + GI SSIF+A I Sbjct: 251 NISLTQTLSRTIMTSVTTLIVVIALFVFGGPTIHSFSLALLIGIGFGTYSSIFVAIAIAY 310 Query: 822 FIYDWRA 828 + R Sbjct: 311 DLGLDRE 317 >gi|15602092|ref|NP_245164.1| preprotein translocase subunit SecD [Pasteurella multocida subsp. multocida str. Pm70] gi|12720453|gb|AAK02311.1| SecD [Pasteurella multocida subsp. multocida str. Pm70] Length = 616 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 154/524 (29%), Positives = 281/524 (53%), Gaps = 39/524 (7%) Query: 30 SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + GLDLRGG ++EVD ++ + D LR+ L+KE Sbjct: 104 NLAPATPKWLTSVGAYPMKWGLDLRGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRKEKY 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++ +N ++ + + + + + ++ +++ Sbjct: 164 QYTGIKSAENFSTLVTLLKPEQLDEVQRFLRK-----------QHHNLEIKSVSDNTLAL 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS+ +++ AIEQ++ I+R+R+ ++G+SE+ IQR G+ RI+++LPG QD +R +++ Sbjct: 213 TLSEAALNESRESAIEQNLTILRKRVSELGVSEAVIQRQGAERIVVELPGVQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G D +G ++ + + G H+ A++ Sbjct: 273 LGATATLEFRLVNENVNLDSATRGFVPNDSEVKLDRNGRPVVLYKRAVLGGEHITNASSG 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D +T +P V ++ D G + TR N+ KP+A + + Sbjct: 333 LDQQTSRPQVSVTLDSEGGEIMSQATRLNLKKPMATLYVEYKDSGKKDENGKAILEKHEE 392 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q + QI+G + A LA +LR+G+L + IVEER +G LG++++ Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVR 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A GL+ +++FM + Y K+GL+A+ ++ N++L + L+SLL ATL++P IAGIV Sbjct: 453 QGLEASFWGLLAVIIFMTLYYRKFGLIANIALIANIVLVVGLMSLLPGATLSMPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+++D+N+L+ ERI+EE R + + ++ G+S A+++IFD+N+T ++ +V+L+ G Sbjct: 513 LSVGMSIDANVLIFERIKEEIRNGRPIQQAIHEGYSGAFTSIFDANLTTILTSVILYAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L + ISMFTAI RA++ F+ K++ + I Sbjct: 573 AGPVKGFAITLALGVGISMFTAIVGTRAIVNFLYGGKRINKLSI 616 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 85/177 (48%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + E +R+G+ +A++I++ + ++ F L A LI +I +G +L Sbjct: 441 TIGPSLGAENVRQGLEASFWGLLAVIIFMTLYYR-KFGLIANIALIANIVLVVGLMSLLP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G S++ V++++R+++ ++ + I + + Sbjct: 500 GATLSMPGIAGIVLSVGMSIDANVLIFERIKEEIR---NGRPIQQAIHEGYSGAFTSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G + FAI +A G+ ++ ++I I+ F+Y + N Sbjct: 557 ANLTTILTSVILYAVGAGPVKGFAITLALGVGISMFTAIVGTRAIVNFLYGGKRINK 613 Score = 42.4 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ IG+L +LPN + + RG Sbjct: 4 RYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGT------------RG--------- 42 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 E+++ L + + S+ I F ++ + DK++ L Sbjct: 43 -----QEANAQIFSEVQTLLNQNNLETKSIILENGSILARFHNTDDQLLAKDKLSEKL 95 >gi|254361838|ref|ZP_04977973.1| preprotein translocase subunit SecF [Mannheimia haemolytica PHL213] gi|153093373|gb|EDN74369.1| preprotein translocase subunit SecF [Mannheimia haemolytica PHL213] Length = 324 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 161/293 (54%), Gaps = 4/293 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM+ R+ G S++ + I + T G N+G+DF GG + ++P DL+ +R Sbjct: 16 PYKLIPFMKYRYVGFIFSLIVTALCIFTIATKGFNWGLDFTGGTVIETQFSQPADLAKLR 75 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + LE+ G+ Q +K+ ++RL GD +V+EM+ +K+ P +TI++ E Sbjct: 76 TELENSGYGNALVQTTGSQKDLMIRLAASAGDMSVGNKVMEMIHQKL---DPNATIKSIE 132 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + +LIY+ RF+W A+G I L D+ T+G F+ Sbjct: 133 FVGPNVGEELTQGAIYATLATLAMLLIYVGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQ 192 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N S S + +++TL R++ T Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKVRRSSSIEIIDIS-LSQTLSRTLMT 251 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S+ VL + GG + SF++ + GI SSI+IA + L + R Sbjct: 252 SVTTLFVVLALFYLGGPTLHSFSLALLIGIGFGTYSSIYIAIGVALQLGLKRE 304 >gi|311694373|gb|ADP97246.1| preprotein translocase subunit SecF [marine bacterium HP15] Length = 317 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 155/288 (53%), Gaps = 6/288 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM R ISI + SI LL T GLN+G+DF GG + L +RS L Sbjct: 9 FDFMGLRKIASIISISLIVVSIALLATRGLNFGMDFTGGTSVEFEYAEAPQLDEIRSRLT 68 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 S QNF + LVR+ D ++ V + + E + ++E VG Sbjct: 69 EAGYEQFSVQNFGADTTVLVRMAEADND-----QLAPEVTRTLKEGGADLELVSSEFVGS 123 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ EL +G++I+ +LIY+ +RF++ F + ++ L D+ LG FALF F+ Sbjct: 124 QVGEELKEDSGLGLLIALAVVLIYVGMRFQFKFGIASVVPLAHDVIIVLGVFALFQWTFD 183 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AA+L +IGYS+ND +VV DR+R+N + + D+I++SI++T+ R++ TS Sbjct: 184 LTVLAALLAVIGYSLNDTIVVADRIRENFRKMRVGEPW-DIINESIHQTIARTINTSGTT 242 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + +L + GG I +FA+ + G+VV SSI+++A +L+ + R Sbjct: 243 LVVLLALYFLGGEAINNFALALIIGVVVGTYSSIYVSANLLMVMGVSR 290 >gi|71908894|ref|YP_286481.1| preprotein translocase subunit SecF [Dechloromonas aromatica RCB] gi|71848515|gb|AAZ48011.1| protein translocase subunit secF [Dechloromonas aromatica RCB] Length = 314 Score = 214 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 162/303 (53%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS+L I ++ LFT GL+ ++F GG + + D Sbjct: 1 MEFFRIHKDIPFMRHALKFNVISLLTFILAVVFLFTKGLHLSVEFTGGTLIETHYEQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R L D S QNF ++ ++RL + ++ E V K + P S Sbjct: 61 LEKIRGALGKSGFSDFSVQNFGSSQDVMIRLPLK--SEQNTNQIGESVMKALEAEAPGSQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL G + +++ I ++IY+ RF+W F++ AI + D+ LGF Sbjct: 119 LRRVEFVGPQVGKELAENGAMALLLVVIGIVIYLAFRFEWRFSVSAIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VVV+DR+R+ K +S +++D +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVVFDRVRETFKK-VRGLSTPEVLDHAITSTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M ++GG + FA+ + GI SS+ +A+P+++++ R + Sbjct: 238 RTIITHGCTQLMVLSMLIFGGETLHYFAMALTIGICFGIYSSVLVASPLVMWLGVSREQF 297 Query: 831 ARI 833 ++ Sbjct: 298 IKV 300 >gi|254373050|ref|ZP_04988539.1| preprotein translocase [Francisella tularensis subsp. novicida GA99-3549] gi|151570777|gb|EDN36431.1| preprotein translocase [Francisella novicida GA99-3549] Length = 314 Score = 213 bits (542), Expect = 7e-53, Method: Composition-based stats. Identities = 89/300 (29%), Positives = 164/300 (54%), Gaps = 3/300 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPV 589 +I F+ + + S+L + S+ +FT GLN G+DF GG Q+ + + Sbjct: 1 MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVPL 648 D + L + F NFL++ ++ A++ ++ K+ E Sbjct: 61 DSETMAKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDVQQYLKQQVENSLD 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + +Q+ +GP++ +EL G++ +I++ + +LIYI RF+ F + A L+ D L Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N + + S +++++SIN+T Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNRSINDT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TS + V+ + ++GGS + +F++ + GI+V SSI++A + + + R Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIIVGTYSSIYVAGVVAVALGLNRE 299 >gi|297181288|gb|ADI17480.1| preprotein translocase subunit secf [uncultured beta proteobacterium HF0130_04F21] Length = 308 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 105/293 (35%), Positives = 154/293 (52%), Gaps = 4/293 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I FM+ ISI I SI + GL++ I+F GG + V + L +R L Sbjct: 10 IAFMKHAKLLNCISIFTFIASIVFIIYQGLHFSIEFTGGTLIEVSYPKQAPLEKIRDKLV 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 L D QNF K+ L+RL + V +K ++ E VGP Sbjct: 70 DLGYTDSQVQNFGTSKDVLIRLPLDSKNKKEAEDVFNEIKLINENEAE---LRRIEYVGP 126 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 +I EL R GI+ +I I ++IY+ IRF+W FA+ AI + D+ LGFF+LF EF+ Sbjct: 127 QIGSELARDGILAMIFVVIGIMIYLAIRFEWKFAVAAIIANLHDVVIILGFFSLFQWEFS 186 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L+ +AAVL ++GYSVN+ VVV DR+R+N K S S + I+ +I T+ R++ T Sbjct: 187 LSVLAAVLAVLGYSVNESVVVADRIRENFKRMRKS-SVVETINNAITRTMSRTIITHGTT 245 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 VL M ++GG V+ FAI + GI+ SSIF+ API +++ R + Sbjct: 246 ETMVLAMLIFGGPVLHYFAIALTIGIIFGIYSSIFVMAPITIWLGIKREDLVK 298 >gi|212702500|ref|ZP_03310628.1| hypothetical protein DESPIG_00517 [Desulfovibrio piger ATCC 29098] gi|212674161|gb|EEB34644.1| hypothetical protein DESPIG_00517 [Desulfovibrio piger ATCC 29098] Length = 526 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 192/530 (36%), Positives = 287/530 (54%), Gaps = 21/530 (3%) Query: 7 LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66 + + ++ + L+ ALP+ + +P +I+LGLDL+GG HL L VD V Sbjct: 7 RLAVALLVFGLCLVYALPSVPYIGT--ALENVLPSKKINLGLDLKGGIHLTLGVDVAKAV 64 Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126 + L + ++R K E I V R + N L FA R ++ + LQ +L Sbjct: 65 SNSLALAGQDIRRLAKDEKIVVLHPRVVGND-KLEFALPRVEDEAK--LQEILQKNFPQL 121 Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186 NV + T I+++ A++Q++ IR RIDQ G++E I++ Sbjct: 122 NVGEPR---RTEAGLRYVAEFRPEEINRIEDMALDQALRTIRNRIDQFGVAEPDIRKQEG 178 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-----------RD 235 +RI +QLPG DP R Q+LG TA + FH V + + + + Sbjct: 179 NRIQVQLPGLSDPRRAVQILGQTAHLEFHLVRDDVDPNKAVLPSGVMALPLLEKGHDGSE 238 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 VE +SG + A F+ + V ++F+ GA F VT +N+G+ +A Sbjct: 239 VATRLIAVEKDAMLSGEDVADAQPTFEKN--RASVSLNFNSRGATLFENVTGENVGRRMA 296 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLD +V +APVI Q I G+A I+G FT + A LA +LRAGSLP ++++EER VG Sbjct: 297 IVLDDKVYSAPVIQQRIAGGRAVITGQFTTQEATDLAIVLRAGSLPAPVSVLEERTVGPS 356 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG +SI G A + G +V+FM + YG G++AD + +++ +A ++ GATLTLP Sbjct: 357 LGQESIDSGINAALVGAAAVVVFMAIYYGMSGVIADVMLCFTMLIVMAGMAGFGATLTLP 416 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL IG+AVD+N+L+ ERIREE S ++ GF RA +I DSN+T +IATV Sbjct: 417 GIAGIVLTIGMAVDANVLIYERIREELHLGLSPLAAVKAGFERATISITDSNLTTIIATV 476 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +L+ FG G +RGFA+T+ L I+ SMFTAI + RA+ + R K I I Sbjct: 477 LLYQFGTGPIRGFAVTLSLGIVASMFTAIFVSRAIFEYWARKCGPKGISI 526 Score = 124 bits (309), Expect = 9e-26, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 + A L + + A FG L +A ++ IG +V+ V++Y+R+R+ + L Sbjct: 388 GVIADVMLCFTMLIVMAGMAGFGATLTLPGIAGIVLTIGMAVDANVLIYERIREELHL-- 445 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 +S + +++ I+ + + +G I FA+ ++ GIV + ++ Sbjct: 446 -GLSPLAAVKAGFERATISITDSNLTTIIATVLLYQFGTGPIRGFAVTLSLGIVASMFTA 504 Query: 813 IFIAAPILLFIYDW 826 IF++ I + Sbjct: 505 IFVSRAIFEYWARK 518 >gi|149926691|ref|ZP_01914951.1| protein export protein SecD [Limnobacter sp. MED105] gi|149824620|gb|EDM83836.1| protein export protein SecD [Limnobacter sp. MED105] Length = 620 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 171/504 (33%), Positives = 276/504 (54%), Gaps = 21/504 (4%) Query: 30 SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L R P + + LGLDLRGG H +L+VD D + + L++E + Sbjct: 103 NLLSRSPDWLTNINALPMYLGLDLRGGVHFLLQVDMDAALEKRKDALLASAKQTLREEDL 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S + L+F D+ + + + + + + Sbjct: 163 RYASAPRTPAGFNLTFRDAEARNKAQAALAKEYPDLQLATPENSSEF--------ALVAT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+ Q +A+ Q++ + RI+++G++E IQR G+ RI++QLPG QD ++ + +L Sbjct: 215 LAPEIEQQAREYALRQNITTLHNRINELGVAEPVIQRQGADRIVVQLPGVQDTAKAKDIL 274 Query: 207 GTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 G TA + V + + FG+ + G L++ +V ++G +L A A Sbjct: 275 GRTATLEVRMVDDSPEAQSALASGIVPFGLERYTERGGRDLLLKSEVILTGDNLTDAQAG 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSGK 316 FD +T +P V ++ D G+R F +T +NIGK +A+VL + V+TAPVI I G+ Sbjct: 335 FDNQTQEPAVHLTLDSQGSRIFRNITAENIGKRMAIVLIEKGKGEVVTAPVIRGEIGGGR 394 Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376 QISG+ + LA +LRAGSL ++I+EER +G LG+D+I KG + + G V + Sbjct: 395 VQISGSMNTVESADLALLLRAGSLAAPMDIIEERTIGPSLGADNIDKGINSTLYGFVALG 454 Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436 +FM++ Y +G+ + F++ +NV+L ALLS+L ATLTLP +A + L +G+A+D+N+L+NE Sbjct: 455 IFMMLYYLLFGVFSVFALAVNVLLLFALLSVLQATLTLPGLAAVALTLGMAIDANVLINE 514 Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 RIREE R ++ G+ RA++TI DSNIT LIA + L FG G VRGFA+ L I Sbjct: 515 RIREELRDGAQPQQAIAAGYERAWATILDSNITTLIAGLALLIFGSGPVRGFAVVHCLGI 574 Query: 497 LISMFTAISIVRAMMIFIIRYKKM 520 L S+F+A+ + R ++ KK Sbjct: 575 LTSIFSAVVVSRGVVNLWYGRKKK 598 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 84/208 (40%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + + I KGI + +A+ Sbjct: 395 VQISGSMNTVESADLALLLRAGSLAAPMDIIEERTIGPSLGADNIDKGINSTLYGFVALG 454 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 I++ + + F + ++ L +++ ++ L +AAV +G +++ V++ Sbjct: 455 IFMMLYY-LLFGVFSVFALAVNVLLLFALLSVLQATLTLPGLAAVALTLGMAIDANVLIN 513 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + I + +++ I+ L + ++G + FA+ Sbjct: 514 ERIREELRD---GAQPQQAIAAGYERAWATILDSNITTLIAGLALLIFGSGPVRGFAVVH 570 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + S++ ++ ++ Y + K Sbjct: 571 CLGILTSIFSAVVVSRGVVNLWYGRKKK 598 Score = 39.3 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 21/112 (18%) Query: 10 LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69 + +++ +G+L LPNF ++ + S K+ + L DL G LE Sbjct: 1 MIAIVLVLGVLYTLPNFYGEAPAVQVSS--GKSTLKLSPDLAGQLSSQLEAQG------- 51 Query: 70 LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 +K +G+ + L F S + D + L Sbjct: 52 -----------IKPDGVFFEE-TLGGGTLKLRFNSSEEQLKARDFLQSKLNP 91 >gi|253990962|ref|YP_003042318.1| preprotein translocase subunit SecD [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782412|emb|CAQ85576.1| Protein-export membrane protein secD [Photorhabdus asymbiotica] Length = 615 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 164/537 (30%), Positives = 284/537 (52%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + + LGLDLRGG H ++EVD + + + Sbjct: 100 VVALNLAPATPTWLSKLGAE---------PMKLGLDLRGGVHFLMEVDMETALGKLQEQN 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LR+ L+++GI ++R+ N + + F D + + + +T + Sbjct: 151 IDGLRTDLREKGIPYSTIRKADNYGVEIRFRDEKARSDAESYLTGRHR-----------D 199 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + V+S + S+A++Q++ I+R R++Q+G++E +QR G+ RI+++ Sbjct: 200 LVFSVGVNNTLKAVMSDERQREARSYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVE 259 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V + G DG+ ++ +V Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNSSVDATAAESGRVPGDSEVKNTRDGSPVVLYKRV 319 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302 ++G H+ +T+ D +P V+IS D G T+DN+GKP+A + Sbjct: 320 ILTGDHITDSTSGTDEYG-QPEVNISLDSAGGTAMSNFTKDNVGKPMATLFVEYKDSGKK 378 Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + Q +I+G A L+ +LRAG+L + IVEE Sbjct: 379 DANGRAVLVKNEEVINIANIQTRLGNNFRITGISNATEARQLSLLLRAGALIAPIQIVEE 438 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LG +I +G A + GL+ +LFM++ Y K+GL+A ++ N++L + ++SLL Sbjct: 439 RTIGPTLGLQNIEQGLEACLWGLIASILFMVIYYRKFGLIASSALLANLVLIVGVMSLLP 498 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+N+ Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTIQQAIHEGYKGAFSSIVDANL 558 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI V+L+ G G+++GFAIT + + SMFTAI RA++ + K++K + I Sbjct: 559 TTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 615 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ + + N + L G S A + + Sbjct: 369 FVEYKDSGKKDANGRAVLVKNEEVINIANIQTRLGNNFRITGISNATEARQLSLLLRAGA 428 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ I ++ F L A + L+ ++ Sbjct: 429 LIAPIQIVEERTIGPTLGLQNIEQGLEACLWGLIASILFMVIYYR-KFGLIASSALLANL 487 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ + + I + Sbjct: 488 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTIQQAIHE 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 V ++ I+ + + G I FAI + G+ + ++I I+ + Sbjct: 545 GYKGAFSSIVDANLTTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAIVNLL 604 Query: 824 YDWRAKNA 831 Y + Sbjct: 605 YGGKRIKK 612 Score = 41.2 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ IGLL ALPN + +++ Sbjct: 4 RYPLWKYLMLIAAILIGLLYALPNLYGEDPA-------------------------VQIT 38 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + D++R+ L+K+ I S+ I F + + + + L Sbjct: 39 GARGIAAS-ERTLDQVRNVLEKDQITSKSIVLENGAILARFNNPDIQLRAREILMSAL 95 >gi|85860050|ref|YP_462252.1| preprotein translocase subunit SecF [Syntrophus aciditrophicus SB] gi|85723141|gb|ABC78084.1| protein translocase subunit [Syntrophus aciditrophicus SB] Length = 302 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 156/303 (51%), Gaps = 4/303 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPV 589 +I F+ V ISI++ + I +F HG N+GIDF GG + + ++ Sbjct: 1 MEIIKSETHFNFVAMMKMAVTISIVYILIGIASIFWHGGLNFGIDFAGGTLIQIRFDQET 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + +R LE + + + Q F + + ++ ++ + Sbjct: 61 SVEKLRQTLEPIGMENSIIQQFGPNEMVVRTAASSMDLKGLSGQIENALQTTYGQKA--F 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I+ E VGPK+ +L RK ++ +I S I +L+Y+ RF+ +A G I L+ D+ T+G Sbjct: 119 EIRRVESVGPKVGSDLTRKALLAIIFSWIGILVYVGFRFELRYAFGGIIALVHDVLVTVG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 +L EF+L VAA+LT+IGYS+ND +V++DR+R+N + + D+I+ S+N+TL Sbjct: 179 TLSLLNKEFDLIIVAALLTIIGYSINDTIVIFDRIRENTRKNMK-MPLMDVINLSVNQTL 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ TS + +L + +GG VI FA + G + S++FIA+PI+L R Sbjct: 238 SRTLLTSFTVILVLLALFFFGGPVIHDFAFTLLVGCIAGVYSTVFIASPIVLAFEKIRPS 297 Query: 830 NAR 832 + Sbjct: 298 RIK 300 >gi|302038579|ref|YP_003798901.1| protein-export membrane protein SecD [Candidatus Nitrospira defluvii] gi|300606643|emb|CBK42976.1| Protein-export membrane protein SecD [Candidatus Nitrospira defluvii] Length = 549 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 179/560 (31%), Positives = 297/560 (53%), Gaps = 46/560 (8%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNF--LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58 M+ ++ + ++ LP++ L + + +P I+LGLDL+GG HLVL Sbjct: 1 MKKVGGRLLALVTMVVASIIFFLPSYQPLYKELPRWVREVLPDKGITLGLDLQGGIHLVL 60 Query: 59 EVDEDDFVNGFLQMYSDELRSFLKKEGI-GVFSMRQIQNKITLSFADSRFKENIADKVTL 117 EV+ED V ++ + L+ L ++ I R ++IT+ F ++ + Sbjct: 61 EVEEDRAVEIAVERTAAGLQDLLVEKKIPAESVKRTGSSQITIGFQNAE--------LKA 112 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q + + + + ++ L I ++ AI Q++E IR RIDQ G++ Sbjct: 113 QVQKMLDDFPTYVE--VESAGSANKVVWELRDAEIKRIKDSAINQALETIRNRIDQFGVA 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-------- 229 E IQR G ++++QLPG +D + L+ TA + F + N K + G Sbjct: 171 EPLIQRQGLKQVVVQLPGIKDAKLAKDLIKQTALLEFKLLDDENQLKLDLPGRIQKGKER 230 Query: 230 ------------------------VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 + YLV+ +V ++G L+ A + Sbjct: 231 EDAFLKQVEGKVPEGDQILFERIVEKESGQEWLAPYLVKKRVMLAGDVLSDARVSIGQFN 290 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 +P V ++FD GAR F +T +N+ K +A+VLD + +APVI + I G+AQI+G F++ Sbjct: 291 -EPYVSVTFDAKGAREFDRITGENVKKRMAIVLDNTIYSAPVIQERISGGRAQITGTFSM 349 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 E A L+ +LRAG+LP L I+++ VG LG DSI KG A + +L+++FM + Y Sbjct: 350 EEANNLSIVLRAGALPAPLKIIQDLTVGPSLGQDSIEKGVKATLFAGLLVIVFMALYYRL 409 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 G++A+F++ LN+I + L+ L ATLTLP IAGI+L IG+ VDSN+L+ ERIREE R+ Sbjct: 410 SGVIANFALLLNLICLIGALAGLNATLTLPGIAGIILTIGMGVDSNVLIFERIREELRQG 469 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 ++V ++D G+ +A TI DS++T LI LF FG G ++GFA+T+ L I I++FTA+ Sbjct: 470 KAVRVAIDAGYDKALLTIVDSHVTTLITGFALFLFGTGPIKGFAVTLCLGIAINLFTALV 529 Query: 506 IVRAMMIFIIRYKKMKSIDI 525 + + + +K++ + I Sbjct: 530 GTKVVFDLFNQRRKIEQLSI 549 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 87/176 (49%), Gaps = 5/176 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + ++ I KG+ + + + +++++ + ++ + A L+L++ +G A Sbjct: 377 GPSLGQDSIEKGVKATLFAGLLVIVFMALYYRLS-GVIANFALLLNLICLIGALAGLNAT 435 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG V+ V++++R+R+ ++ + R ID ++ L V + + Sbjct: 436 LTLPGIAGIILTIGMGVDSNVLIFERIREELRQ---GKAVRVAIDAGYDKALLTIVDSHV 492 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + ++G I FA+ + GI + +++ + ++ +++ R K ++ Sbjct: 493 TTLITGFALFLFGTGPIKGFAVTLCLGIAINLFTAL-VGTKVVFDLFNQRRKIEQL 547 >gi|270157326|ref|ZP_06185983.1| protein-export membrane protein SecF [Legionella longbeachae D-4968] gi|289164279|ref|YP_003454417.1| protein-export membrane protein SecF [Legionella longbeachae NSW150] gi|269989351|gb|EEZ95605.1| protein-export membrane protein SecF [Legionella longbeachae D-4968] gi|288857452|emb|CBJ11280.1| putative protein-export membrane protein SecF [Legionella longbeachae NSW150] Length = 305 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 95/298 (31%), Positives = 161/298 (54%), Gaps = 7/298 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + FM AR W SIL + SI L HGL +G+DF GG Q+ V + D Sbjct: 1 MEFFNPNSNVDFMGARRWTAMFSILIFVLSIGALTIHGLKWGLDFTGGTQIEVSYSSAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R +L + ++ K+ L+ + + A+ + ++ +P + Sbjct: 61 LPSIRESLAKAGFKEAQVVSYGTSKDVLISIAPREDKEQAR------LVDQVMTALPGAN 114 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 Q E VGP++ +EL KG + V++S +A +IYI +RF++ A+ + L+ D LG Sbjct: 115 KQRVEFVGPQVGQELATKGALAVVVSLLATMIYIAMRFEYRLAVSSAVALVHDPVLILGI 174 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA FG+EF+L A+A +L +IGYS+ND +VV+DR+R+N + S ++++ SIN+TL Sbjct: 175 FAFFGVEFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKIRRATSI-EIMNISINQTLS 233 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS VL + ++GG I F++ + GI++ SSI++A + + + R Sbjct: 234 RTIMTSTLTLFVVLALFIYGGEAIHGFSLALIIGILIGTYSSIYVAGALAVAMGLDRK 291 >gi|254374502|ref|ZP_04989983.1| preprotein translocase [Francisella novicida GA99-3548] gi|151572221|gb|EDN37875.1| preprotein translocase [Francisella novicida GA99-3548] Length = 314 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 83/300 (27%), Positives = 159/300 (53%), Gaps = 3/300 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 +I F+ + + S+L + S+ +FT GLN G+DF GG Q+ + + Sbjct: 1 MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648 S + + + + G+ N + + + + + ++ Sbjct: 61 DSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVENSLD 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + +Q+ +GP++ +EL G++ +I++ + +LIYI RF+ F + A L+ D L Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N + + + +++++SIN+T Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNANVVEVVNRSINDT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TS + V+ + ++GGS + +F++ + GIVV SSI++A + + + R Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 299 >gi|127513262|ref|YP_001094459.1| preprotein translocase subunit SecF [Shewanella loihica PV-4] gi|126638557|gb|ABO24200.1| protein translocase subunit secF [Shewanella loihica PV-4] Length = 315 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 170/299 (56%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I F+R +S++ I S+ L +G+N+G+DF GG + + PV Sbjct: 1 MFEILSIKGTINFLRHAVAISALSLILVIGSLASLAVNGINWGLDFTGGTVVEMEFKNPV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL+ +R+ L S + QNF ++ L+RL + G + V + ++ P Sbjct: 61 DLNQLRAALTSDETDGAVVQNFGSSRDVLIRLPVKEGVKSDLQ--VAHVMEAAAKVDPGV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + + E VGP++ +EL +G + V+++ I +LIY+ RF+W ALG++ L D+ TLG Sbjct: 119 SQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLALGSVAALAHDVIITLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+LF +EF+LT +A VLT++GYS+ND +VV+DR+R+N + ++++ SI +T+ Sbjct: 179 VFSLFQLEFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKG-TPEEVVNNSITQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T+ + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAVKLGINRE 296 >gi|152991208|ref|YP_001356930.1| preprotein translocase subunit D [Nitratiruptor sp. SB155-2] gi|151423069|dbj|BAF70573.1| preprotein translocase subunit D [Nitratiruptor sp. SB155-2] Length = 520 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 175/542 (32%), Positives = 296/542 (54%), Gaps = 34/542 (6%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR W +L+ + +G+ +++P+ L +I+LGLDL+GG H++L V Sbjct: 1 MRWTNWRFVLFVAVFIVGIALSVPSILGLKSGP---------KITLGLDLQGGLHMLLGV 51 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + ++ + ++ F ++ I + ++ KI + D I + + Sbjct: 52 DTKKAIESKIKSIASSIKYFSEQNDILLEDLKIGDKKIEFTLLDKDDAPKIEEFIQK--- 108 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + +++ ++ L+ I+ + +AI+Q+++ IR R+DQ G++E T Sbjct: 109 ----------EPGIVIKKEGLHYTLTLTPKEIESIKEYAIKQAVDTIRNRLDQFGLAEPT 158 Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMS--------FHKVLPNNSKKGFMFG 229 + + G +IL++LPG + P R+R+L+ A + +V ++ +G Sbjct: 159 VAKQGKDKILVELPGIKTPEQEQRVRKLIAKAAHLQLMAVDEARQARVDTMTPEEAAEYG 218 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 L+D G +YLV++ + G + A FD +PV++ + + GAR F + T N Sbjct: 219 DVILKDRHGRKYLVKEIPILDGSMIKDARVAFDQNN-QPVINFTLNSEGARIFGDFTAKN 277 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 +GK LAVVLD + +APVI + I G QISG FT+ A +A LR+G+L + + E+ Sbjct: 278 VGKRLAVVLDNVIYSAPVIRERIGGGSGQISGGFTVAEAHDVAIALRSGALLAPVYMEEK 337 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R++G LG+DSI + A+V+G VL+VLFMI YG G++AD ++ N+ L + +++L G Sbjct: 338 RSIGPSLGADSIRQSLIALVSGFVLVVLFMIFYYGIAGIIADIALVANLFLIIGVMALFG 397 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 ATLTLP +AGIVL +G+AVD+N+++NERIRE R+ S+ +++ G+ A S I D+NIT Sbjct: 398 ATLTLPGMAGIVLTVGMAVDANVIINERIRELLREGVSIKKAIEQGYKNAMSAILDANIT 457 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529 LIA VVL+ +G G ++GFAITM + IL SM TAI + ++ + Sbjct: 458 TLIAAVVLYAYGTGPIKGFAITMSIGILASMITAIIGTHGIYEALLPKIERSKNLKTWFG 517 Query: 530 RF 531 Sbjct: 518 IK 519 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 87/184 (47%), Gaps = 4/184 (2%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ +GP + + IR+ ++ ++ + +++++ + + A L+ ++ +G Sbjct: 333 YMEEKRSIGPSLGADSIRQSLIALVSGFVLVVLFMIFYYGI-AGIIADIALVANLFLIIG 391 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ALFG L +A ++ +G +V+ V++ +R+R+ ++ +S + I++ + Sbjct: 392 VMALFGATLTLPGMAGIVLTVGMAVDANVIINERIRELLRE---GVSIKKAIEQGYKNAM 448 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + ++ I+ + + +G I FAI M+ GI+ + ++I I + + Sbjct: 449 SAILDANITTLIAAVVLYAYGTGPIKGFAITMSIGILASMITAIIGTHGIYEALLPKIER 508 Query: 830 NARI 833 + + Sbjct: 509 SKNL 512 >gi|225848937|ref|YP_002729101.1| protein-export membrane protein SecF [Sulfurihydrogenibium azorense Az-Fu1] gi|225644276|gb|ACN99326.1| protein-export membrane protein SecF [Sulfurihydrogenibium azorense Az-Fu1] Length = 308 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 162/303 (53%), Gaps = 2/303 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + + I F++ R G IS + S+ L FT G N G+DF GG + V N+PV Sbjct: 1 MRNFLVEAPNIDFLKIRKIGYLISFSLLVISLFLFFTKGFNLGLDFTGGTSVQVKFNQPV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +S +R L+ +++ D Q EK + ++ + V + K + Sbjct: 61 KISDIRPLLKEVKLDDALIQEVGTEKK-EIEIRVSTKKGSSSMVVENIKKALDGKYKGQY 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I+ E + + E+ R I + + +L+++ R++ FA+ A+ L D TLG Sbjct: 120 EIRKIEFIDALVGSEMARASIYSIAFVFLGILLFVGYRYEPLFAIAAVIPLFHDAIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L G E +LT VAA+LT++GYS+ND ++V+DR+R+N+K + R +I+KSINE L Sbjct: 180 LFSLIGREIDLTVVAAILTVLGYSLNDTIIVFDRIRENIKQRGKK-NLRTIINKSINENL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 GR++ TS + SVL + +GG + SFA+ + GIV SSI++AAP++L + + Sbjct: 239 GRTIITSGTSLFSVLALYFFGGESLNSFALALLIGIVFGTYSSIYVAAPLILEVENLLRS 298 Query: 830 NAR 832 + Sbjct: 299 RVK 301 >gi|209520464|ref|ZP_03269224.1| protein-export membrane protein SecF [Burkholderia sp. H160] gi|209499109|gb|EDZ99204.1| protein-export membrane protein SecF [Burkholderia sp. H160] Length = 316 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 156/298 (52%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS++ + ++ L GL+ ++F GG + V V Sbjct: 1 MEFFRFRKDIPFMQRALIFNAISLITFLAAVFFLVHRGLHLSVEFTGGTVIEVQYPGAVP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF ++ L+RL +PG + AQ + V + P Sbjct: 61 LDPVRNTLGKLGYADAQVQNFGSSRDVLIRLPLKPGLTSAQQS--DQVMGALKADTPEVQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + ++IY+ RF+W +A+ + + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVAGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ ++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVIEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T + VL M ++GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWLGVKRE 295 >gi|197363358|ref|YP_002142995.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128694|gb|AAV78200.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094835|emb|CAR60368.1| protein-export membrane protein SecF [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|326622111|gb|EGE28456.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 304 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 161/286 (56%), Gaps = 1/286 (0%) Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 MR FW GIS L I +I ++ G N+G+DF GG + + +P ++ V+R L+ Sbjct: 1 MRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAG 60 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 + QNF + +VR+ G++ Q ++V + ++ E VGP + Sbjct: 61 YEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQNAAVKRIEFVGPSVG 120 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 +L + G + ++++ I++L+Y+ RF+W A G + L D+ TLG +LF IE +LT Sbjct: 121 ADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTI 180 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ +TL R++ TS + Sbjct: 181 VASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSGTTLVV 239 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 240 ILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 285 >gi|209744144|gb|ACI70379.1| protein-export membrane protein SecD [Escherichia coli] Length = 615 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQDSNQLRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + + ++++ I +K F L A + LI ++ +G +L Sbjct: 440 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612 >gi|238760779|ref|ZP_04621890.1| Protein-export membrane protein secD [Yersinia aldovae ATCC 35236] gi|238701002|gb|EEP93608.1| Protein-export membrane protein secD [Yersinia aldovae ATCC 35236] Length = 615 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 165/537 (30%), Positives = 288/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + + LGLDLRGG H ++EVD D + + Sbjct: 100 VIALNLAPATPTWLARLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LRS L+++ I ++R++ N + + F D + +++ S L+ + Sbjct: 151 MDTLRSDLREKNIPYATVRKLDNYGVEVRFRDDKTRDDAI-----------SYLSPRHRD 199 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + + V+S + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 200 LVIGSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNSNVDATVAASGRVPGDSEVKNTREGRPVVLYKRV 319 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 320 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKK 378 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 379 DANGRAILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 438 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM+V Y K+G++A ++ N++L + ++SLL Sbjct: 439 RTIGPTLGSQNITQGLEACLWGLAVSILFMVVYYRKFGVIASIALLANLVLIVGVMSLLP 498 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+N+ Sbjct: 499 GATLTMPGIAGIVLTLAIAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANV 558 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 559 TTLITAIILYAVGTGSIKGFAITTVIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 615 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 75/177 (42%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A L+ ++ +G +L Sbjct: 440 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASIALLANLVLIVGVMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 499 GATLTMPGIAGIVLTLAIAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI G+ + ++I I+ +Y + N Sbjct: 556 ANVTTLITAIILYAVGTGSIKGFAITTVIGVATSMFTAIVGTRAIVNLLYGGKRINK 612 Score = 39.7 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 29/114 (25%), Gaps = 26/114 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ +GLL ALPN + + Sbjct: 4 RYPLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115 L D L + I S+ I F D + + + Sbjct: 42 GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREAL 91 >gi|152978722|ref|YP_001344351.1| preprotein translocase subunit SecF [Actinobacillus succinogenes 130Z] gi|150840445|gb|ABR74416.1| protein-export membrane protein SecF [Actinobacillus succinogenes 130Z] Length = 319 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 156/301 (51%), Gaps = 5/301 (1%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + ++FM+ R WG SIL + +FT G N+G+DF GG+ + ++ Sbjct: 8 HEYKGIGLPFKLVRFMQYRKWGYLFSILLTTTCFFFIFTKGFNWGLDFTGGVVIDTHFSQ 67 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL VRS L I Q + ++RL GD+ T++ E++ T + Sbjct: 68 PADLEKVRSALNQNGIESALVQTTGSTSDVMIRLPAAAGDAQIGTKIKEIM----TALDA 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 I++ E VGP + EL + + + + + +L Y+ +RF+W G + L D+ T Sbjct: 124 DIAIKSVEFVGPNVGDELAQSAVYATLTTLVLLLGYVALRFEWRLGAGGVLALAHDVVVT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG F+ IE +LT VAA+L+++GYS+ND +VV+DR+R+N + S ++I+ S+ + Sbjct: 184 LGIFSFLQIEMDLTFVAAILSVVGYSLNDSIVVFDRVRENFRKIRRLES-DEVINISLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS+ V+ + +GG I SF++ + GI SSI +A + + R Sbjct: 243 TLSRTMMTSVTTLFVVIALLSFGGPTIYSFSLALLIGIAFGTYSSILVAIALAYDLGLKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|291532255|emb|CBL05368.1| protein translocase subunit secF [Megamonas hypermegale ART12/1] Length = 306 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 82/296 (27%), Positives = 143/296 (48%), Gaps = 1/296 (0%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 + R IS L I S+ + T G N GIDF GG + + + V+++ VR+ Sbjct: 1 MARFDIIGKRKIWYAISSLLIIASLFFMVTRGFNMGIDFTGGTIMDLRFEKAVNINDVRA 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + + + Q + + + + V +T+ + + E Sbjct: 61 VLNEYNLSNSTIQLSGESSSSTESENVMIRTVDLEEQERKEVMAGLTDKLGAYQVLREEK 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG + ELI I IIS + ++ Y+ RF++ F + A+ L ++ LG FAL Sbjct: 121 VGATMGTELIMNAIYATIISWLLIIAYVSYRFEFKFGISAVLGLAHNVIIVLGAFALTQR 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775 + + + VAA+LT+IGYS+ND +V++DR+R+N+KL+ + +L++ SI +T+ RS+YT Sbjct: 181 QIDSSFVAALLTIIGYSINDTIVIFDRIRENLKLHFRKNGDIVELVNTSIYQTMTRSIYT 240 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + +GG FA + G A +SIFIA+P+ + + K Sbjct: 241 VSTVLFATFALYFFGGDTTKDFAFALLIGFFCGAYTSIFIASPLWVTFRRYSDKKR 296 >gi|227327502|ref|ZP_03831526.1| preprotein translocase subunit SecF [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 324 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR IS L I SI ++ G N+G+DF GG + + + Sbjct: 7 YNIEQLNHGRKVYDFMRWDTLAFAISGLLIIASIAIMGVRGFNWGLDFTGGTVIEINLEQ 66 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P+DL V+RS+LE+ + QNF ++ +VR+ G S + +++K Sbjct: 67 PIDLDVLRSSLETSGFSEPQVQNFGSSRDVMVRMPPVSG-SENEALGNKVLKVVNDTSQQ 125 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+LIYI RF+W A+GA+ L D T Sbjct: 126 HATVKRIEFVGPSVGSDLAQAGALALMSALIAILIYIGFRFEWRLAMGAVLALAHDAIIT 185 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+NDK+VV DR+R+N + + ++ + S+ + Sbjct: 186 MGLLSLFSIEVDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKVRRGTPY-EITNISLTQ 244 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS ++ + V+GG+++ F++ M G+++ SSI++++ + L + R Sbjct: 245 TLHRTIITSATTLAMIVILMVFGGALLHGFSLTMFIGVIIGTISSIYVSSALALKLGMKR 304 Query: 828 A 828 Sbjct: 305 E 305 >gi|331676075|ref|ZP_08376787.1| protein-export membrane protein SecD [Escherichia coli H591] gi|331076133|gb|EGI47415.1| protein-export membrane protein SecD [Escherichia coli H591] Length = 615 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 94/248 (37%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ + N ++ L G + + Sbjct: 369 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 428 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + + ++++ I +K F L A + LI ++ Sbjct: 429 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANL 487 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 488 ILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDE 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I V+ + G I FAI G+ + ++I I+ + Sbjct: 545 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 604 Query: 824 YDWRAKNA 831 Y + Sbjct: 605 YGGKRVKK 612 >gi|312792816|ref|YP_004025739.1| protein-export membrane protein secf [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179956|gb|ADQ40126.1| protein-export membrane protein SecF [Caldicellulosiruptor kristjanssonii 177R1B] Length = 310 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 147/303 (48%), Gaps = 9/303 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R + +SIL + + F G NY IDF GG L + ++ + Sbjct: 1 MTKIDFMGKRKYFYIVSILVMVIGLISYFVQGFNYDIDFTGGTVLEINLHKVPTAQEISE 60 Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI------TEIVPL 648 L G + E + + +T + + + K+ + Sbjct: 61 LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKNKTELSKQTRDKLFGEIAKKYNLKK 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + + + VG +S EL + I V+I++I MLIYI IRF++ F A+ LI D+ L Sbjct: 121 EDLISYQNVGAVVSSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + LF I N T +AA+LT++GYS+ND +VV+DR+R+N ++ + +DL++ S+N+T Sbjct: 181 TVYTLFRIPLNSTFIAAILTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +GRS+ T+M+ I ++ + G I FA P+ G++ SSIFIA + Sbjct: 240 IGRSIATAMSVIIVLVVLYFMGVQSIKEFAFPLLIGVISGTYSSIFIATALWFDWELSTR 299 Query: 829 KNA 831 K Sbjct: 300 KKK 302 >gi|269962426|ref|ZP_06176776.1| protein-export membrane protein SecD [Vibrio harveyi 1DA3] gi|269832922|gb|EEZ87031.1| protein-export membrane protein SecD [Vibrio harveyi 1DA3] Length = 607 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 153/524 (29%), Positives = 272/524 (51%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + + RS L++ I Sbjct: 93 NLAPATPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 152 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + + + + D + + Sbjct: 153 RYRAIRPSGTEGVEVLLRNEEQLAEAKATLEKN--------HPDMNFVDSDSNGRYALIA 204 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 205 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264 Query: 206 LGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G D DG +++ +V + G + ++ Sbjct: 265 LGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD-ASS 323 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + ++ NIGK +A V Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILDKHEE 383 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A + G+V ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 444 MGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 503 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GAV+GFA+T+ + IL SMFTAI R ++ I K++ + I Sbjct: 564 TGAVKGFAVTLSIGILTSMFTAIVGTRCIVNLIYGGKRVDKLSI 607 Score = 145 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I +A Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G + FA Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I I+ IY + Sbjct: 572 VTLSIGILTSMFTAIVGTRCIVNLIYGGKR 601 >gi|322834076|ref|YP_004214103.1| protein-export membrane protein SecD [Rahnella sp. Y9602] gi|321169277|gb|ADW74976.1| protein-export membrane protein SecD [Rahnella sp. Y9602] Length = 604 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 167/538 (31%), Positives = 291/538 (54%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D ++ + Sbjct: 88 FVIALNLAPATPRWLSMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALSKLQEQ 138 Query: 73 YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D +RS L+ + I ++R++ N + + F D+ +++ S L+ + Sbjct: 139 TMDNMRSDLRDKNIPYATVRKLDNYGVEVRFRDAATRDSAV-----------SYLSPRHR 187 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 ++ + + I +V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI++ Sbjct: 188 DLVITNSGDNAIRVVMTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVV 247 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V N G DG ++ + Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNTNVDASAASTGRVPGDSEVKNMRDGRPVVLYKR 307 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T++ + ++P V+IS D G T+DNIGKP+A + + Sbjct: 308 VILTGDHITDSTSS-MDEYNQPQVNISLDSAGGNAMSNFTKDNIGKPMATLFVEYKDSGK 366 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 Q+ +I+G A L+ +LRAG+L + IVE Sbjct: 367 KDANGRAILAKQEEVINVATIQSRLGNSFRITGVNDPNEARQLSLLLRAGALIAPIQIVE 426 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A + GLV +LFM+V Y K+G++A ++ N+IL + ++SLL Sbjct: 427 ERTIGPTLGMQNITQGLEACLWGLVASILFMVVWYRKFGIIATTALVANLILIVGIMSLL 486 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE + +SV ++ G+ A+S+I D+N Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSVQQAIHEGYKGAFSSIVDAN 546 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IT LI ++L+ G G+++GFAIT + + SMFT+I RA++ + K++K + I Sbjct: 547 ITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTSIVGTRAIVNLVYGGKRIKKLSI 604 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 79/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + +A ++++ + ++ F + A T L+ ++ +G +L Sbjct: 429 TIGPTLGMQNITQGLEACLWGLVASILFMVVWYR-KFGIIATTALVANLILIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ +K S + I + V Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSVQQAIHEGYKGAFSSIVD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+ + +SI I+ +Y + Sbjct: 545 ANITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTSIVGTRAIVNLVYGGKRIKK 601 >gi|187477347|ref|YP_785371.1| preprotein translocase subunit SecD [Bordetella avium 197N] gi|115421933|emb|CAJ48453.1| protein-export membrane protein [Bordetella avium 197N] Length = 626 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 179/518 (34%), Positives = 279/518 (53%), Gaps = 28/518 (5%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74 + LL A P ++ + LGLDLRGG H +L+VD + + Sbjct: 110 VALNLLPASPPWMRSL------GWFEPRPMYLGLDLRGGVHFLLQVDMQGALTARYDSLA 163 Query: 75 DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134 + RS L+ + I ++ + I +F+ ++ + + + Sbjct: 164 ADARSILRDQKIDAVNVERSGQAIVATFSSPELRDRAREALRSRM----------TDLQF 213 Query: 135 LVTTTEKEISI--VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + + LS I +V A++Q++ + RI+++G++E IQ+ G+ RI++Q Sbjct: 214 IDRNEDGRFVLDGALSPQAIARVQETALKQNINTLHNRINELGVAEPVIQQQGADRIVVQ 273 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDK 246 LPG QD ++ ++LLG TA + V + + + FG+ D DG LV + Sbjct: 274 LPGVQDVAKAKELLGRTATLELRMVDDSPAAQAALANGTVPFGLERYSDRDGRPILVRRQ 333 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRV 302 V ++G +L A D +T +P V+++ D GAR F +VTRDN+GK + G V Sbjct: 334 VILTGENLQDAQPGRDHQTQQPSVNLTLDSKGARIFRDVTRDNVGKRIAILLFENGKGEV 393 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 +TAPVI I G+ QISG+ + E A A +LRAG+L ++I+EER +G LG+D+I Sbjct: 394 VTAPVIRSEIGGGQVQISGSMSAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIA 453 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG + + G + I +F+IV Y +G+ + + NV+L LALLS+L ATLTLP IA I L Sbjct: 454 KGFYSTLYGFIAIAVFIIVYYHLFGVFSTIGLTFNVLLLLALLSMLQATLTLPGIAAIAL 513 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+A+DSN+L+NERIREE R S ++ GF RA+ TI DSN+T LI + L FG Sbjct: 514 TLGMAIDSNVLINERIREELRAGASPQQAIYHGFERAWGTILDSNLTTLIVGLALLAFGS 573 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 G +RGFA+ L IL SMF+++ VRA+ +K Sbjct: 574 GPIRGFAVVHCLGILTSMFSSVVGVRALANLWYGGRKK 611 Score = 144 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 85/213 (39%), Gaps = 4/213 (1%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G A+ + + + +I +GP + + I KG + IA+ Sbjct: 407 QVQISGSMSAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAI 466 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 ++I + + F + + L ++ L ++ L +AA+ +G +++ V++ Sbjct: 467 AVFIIVYYHL-FGVFSTIGLTFNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLI 525 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 +R+R+ ++ S + I G + +++ I L + +G I FA+ Sbjct: 526 NERIREELRA---GASPQQAIYHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + SS+ + Y R K A+I Sbjct: 583 HCLGILTSMFSSVVGVRALANLWYGGRKKLAKI 615 Score = 40.1 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 32/128 (25%), Gaps = 29/128 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I + IGLL LPNF +S +++ Sbjct: 3 RYPLWKYITVLVAVVIGLLYTLPNFYGESPA-------------------------VQIS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117 + L + S+ QN I F + + D + Sbjct: 38 SAKATIKVEPSLLPRVEQILADAKLSATSVYYEQNGTLGTIRARFPSTDIQLQARDLLDR 97 Query: 118 FLQGVNSK 125 L V Sbjct: 98 SLNTVAGD 105 >gi|312128235|ref|YP_003993109.1| protein-export membrane protein secf [Caldicellulosiruptor hydrothermalis 108] gi|311778254|gb|ADQ07740.1| protein-export membrane protein SecF [Caldicellulosiruptor hydrothermalis 108] Length = 310 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 147/303 (48%), Gaps = 9/303 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R + +SIL + + F G NY IDF GG L + ++ + Sbjct: 1 MTKIDFMGKRKYFYIVSILVMVIGLISYFVQGFNYDIDFTGGTVLEINLHKVPTAQEISE 60 Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--- 651 L G + E + + +T + + + K+ + Sbjct: 61 LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKKKTELSKQTRDKLFAEIAKKYNLKK 120 Query: 652 ---QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + + VG +S EL + I V+I++I MLIYI IRF++ F A+ LI D+ L Sbjct: 121 EDLISYQNVGAVVSSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVVALIHDLLIVL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + LF I N T +AAVLT++GYS+ND +VV+DR+R+N ++ + +DL++ S+N+T Sbjct: 181 TVYTLFRIPLNSTFIAAVLTVLGYSINDTIVVFDRIRENRRIAGK-MDLKDLVNLSMNQT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +GRS+ T+M+ I ++ + + G I FA P+ G++ SSIFIA + Sbjct: 240 IGRSIATAMSVIIVLVVLYIMGVQSIKEFAFPLLIGVISGTYSSIFIATALWFDWELSTR 299 Query: 829 KNA 831 K Sbjct: 300 KKK 302 >gi|88858508|ref|ZP_01133150.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Pseudoalteromonas tunicata D2] gi|88820125|gb|EAR29938.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Pseudoalteromonas tunicata D2] Length = 315 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 167/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 L+ I FM R + S L + SI + GLN+G+DF GG + V ++ Sbjct: 1 MMQLLRVKDTIDFMSIRKLTMAFSALLIVISIISMAVRGLNFGLDFTGGTAVEVGFSQAA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 D+ VR +LES D S Q F + LVRL + D A + + I ++ P + Sbjct: 61 DIDKVRGSLESSGFADASVQLFGSSQEILVRLAPRGADVTAVM-IGNDMMTAIQQVYPDA 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + +L +G + ++ + I +LIY+ +RF+W FA+GA+ L D+ T+G Sbjct: 120 QMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAMRFEWRFAVGAVLALGHDVIITMG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ G+EF+LT +AA+L +IGYS+ND +VV DR+R+N + ++I+ S+ +TL Sbjct: 180 LFSILGLEFDLTVLAAILAVIGYSLNDTIVVSDRIRENFRK-VRIDDTIEIINISLTQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TSM + ++ + +WGG +I FA + G+ + SS+++A+ I + + + Sbjct: 239 NRTLMTSMTTLVVLVALFIWGGQIIHGFATALLIGVFIGTYSSVYVASSIAISLGISKE 297 >gi|317403821|gb|EFV84298.1| acriflavine resistance protein B [Achromobacter xylosoxidans C54] Length = 1060 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 73/687 (10%), Positives = 182/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L L + + ++P+ P G + Sbjct: 8 RPVFAWVIAIVLMMAGALSIL-----KLPVSQYPNIAPPAI---------GIAVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L + ITL+F + +V L Sbjct: 54 AQTVQDTVVQVIEQQMNGLDGLEYISSGSNSDGSMSITLTFRQGTNPDTAQVQVQNKLSL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + ++++ + + + D I ++ Sbjct: 114 AQPLLPQEVQQQGIRVTKATKNFLIVAGFVSTDGTMTKDDLADYVASYVQDPISRTQGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L TT + N G Sbjct: 174 DFQLFGSQ-YAMRIWLDPAKLVNYGLTTVDVVNAIKEQNVQVSSGQLGGLPAVRGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + K + + I Sbjct: 233 TIIGPSRL-------------EKPEDFGRILLKVNADGSQVRLANVARIELGGQTYAIDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L+ P + S Sbjct: 280 YYNGKPASGLAIKLAPGANALDTAQAVRDTINNLKPYFPPGMDVVYPYDTTPFVSLSIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VFKTLVEAIILVFLVMYLFLQNFRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLTPKQATRKSMTQITGALIGIAMVLAAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ S+++S+ AI A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVIVAIVFTPALCATLLKPIPKGHHGTKRGFFGWFNRAF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + +A R + V + + +G + + Sbjct: 520 DRSSHGYANTVARGLGRTKRLMVVYLAIVIAMGWMFTRIPTAFLPAEDQGILFAQIQTPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ ++ ++ + F V G + + ++ Sbjct: 580 GATAERTKAVIDEATNYLLTEEKDAVTSVFAVNGFNFGGRGQNASILFIKLRDWEDRGDA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 R+ R ++ V+ Sbjct: 640 KLKAAAVAARANAHFRKTERDAMLFVV 666 Score = 80.9 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 83/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L+ V Q I + L +++ + + + Sbjct: 258 SQVRLANVARIELGGQTYAIDSYYNGKPASGLAIKLAPGANALDTAQAVRDTINNLKPYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P I + ++ + I + + +++ + + L + + + Sbjct: 318 PPGMDVVYPYDTTPFVSLSIEEVFKTLVEAIILVFLVMYLFLQNFRATLIPTLAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + ++ + KS+ Sbjct: 378 GTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLTPKQATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G + +M +PMA +GGS F+I + +V++ +I + Sbjct: 436 TQITGALIGIAMVLAAVFIPMAFFGGSTGVIYRQFSITIVSSMVLSVIVAIVFTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 67/181 (37%), Gaps = 8/181 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 E G L + IS I + + + ++ W + + L I LG Sbjct: 855 GFEWTGMSFEERLSGAQAPALYAISLIVVFLCLAALYESWTIPSAVMLVVPLGIIGALGA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+ ++ +LT IG + + +++ + ++ Y S + + + L Sbjct: 915 TMLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKE---HYEAGASLTESAIHAARQRLR 971 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + TS+A + V+P+A+ G + + G++ A +IF + + Sbjct: 972 PILMTSLAFILGVVPLAISSGAGSGSQNAIGTGVIGGMLTATFLAIFFVPAFFVIMLRLF 1031 Query: 828 A 828 Sbjct: 1032 K 1032 >gi|206890659|ref|YP_002248128.1| protein-export membrane protein SecD [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742597|gb|ACI21654.1| protein-export membrane protein SecD [Thermodesulfovibrio yellowstonii DSM 11347] Length = 540 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 182/558 (32%), Positives = 300/558 (53%), Gaps = 51/558 (9%) Query: 1 MRNNP-WLVILYSMICCIGLLIALPN--FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57 MR + L + + ++ LPN + +P I LGLDLRGGSHL+ Sbjct: 1 MRKGIYLRIALIAFTVILAIIFFLPNTPLFSYMP-GWWKKNLPHKGIVLGLDLRGGSHLI 59 Query: 58 LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 EVD ++ L+S L+K+G+ S++ KI + + + V Sbjct: 60 FEVDLKRAREITVERIGMHLQSLLEKKGLK-PSVKVQGEKIFIQ--------PVNEDVKK 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 ++ + L ++ I L + +V + ++EQ++E+IR RIDQ+G++ Sbjct: 111 IIKENYADL--------SISEHGGNIICELPETAFKRVETTSVEQAIEVIRNRIDQLGVA 162 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E I + G + I++QLPG +DP + +++G TA++ F + + + + + D Sbjct: 163 EPAIHKQGENEIVVQLPGVKDPKKALEIIGKTAQLEFKLLDEETTLWKQLPSLIKAGEED 222 Query: 238 ------------------------------GNQYLVEDKVEISGIHLNGATANFDPKTHK 267 Y+V+ V ++G L A + D + ++ Sbjct: 223 TFLNQWKSKLPESDEIVFQKIVNKETGEVYKRPYIVKKDVLLTGDLLAEAHVSIDQRFNE 282 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 P V + F++ GA+ F ++T + + LA++LDG + +APVI + I G AQISG+FT+E Sbjct: 283 PYVSLRFNDAGAKIFEDITGKYVKRRLAIILDGNLYSAPVIQEKIEGGNAQISGSFTLEE 342 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A LA +LRAG+LP + +++ VG LG DSI G A++ + + LFMI+ Y G Sbjct: 343 AKDLAIVLRAGALPAPVKLIQNVTVGPTLGKDSIEAGKMAVIIASIFVSLFMIIYYRLSG 402 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 ++ADF++ LN+IL + L+ L ATLTLP IAGI L +G+AVDSN+L+ ERIREE R ++ Sbjct: 403 VIADFALILNIILLIGALAALNATLTLPGIAGIALAVGMAVDSNVLMFERIREELRLGKT 462 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 +++ G+ +A+ TIFDS++T LI VLF FG G ++GFA+T+ L + I++FTA+ Sbjct: 463 PKAAIETGYKKAFWTIFDSHVTTLITAAVLFHFGSGPIKGFAVTLSLGVAINLFTALIGT 522 Query: 508 RAMMIFIIRYKKMKSIDI 525 + + FI K+ KS+ I Sbjct: 523 KTVFDFIYIGKERKSLSI 540 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 84/179 (46%), Gaps = 4/179 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 VGP + ++ I G + VII++I + +++ I ++ + A LIL+I +G A Sbjct: 363 QNVTVGPTLGKDSIEAGKMAVIIASIFVSLFMIIYYRLS-GVIADFALILNIILLIGALA 421 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L +A + +G +V+ V++++R+R+ ++L + + I+ + Sbjct: 422 ALNATLTLPGIAGIALAVGMAVDSNVLMFERIREELRL---GKTPKAAIETGYKKAFWTI 478 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + I+ + +G I FA+ ++ G+ + +++ + FIY + + + Sbjct: 479 FDSHVTTLITAAVLFHFGSGPIKGFAVTLSLGVAINLFTALIGTKTVFDFIYIGKERKS 537 >gi|320643777|gb|EFX12900.1| preprotein translocase subunit SecD [Escherichia coli O157:H- str. 493-89] gi|320649128|gb|EFX17706.1| preprotein translocase subunit SecD [Escherichia coli O157:H- str. H 2687] Length = 604 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQDSNQLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + + ++++ I +K F L A + LI ++ +G +L Sbjct: 429 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601 >gi|149908736|ref|ZP_01897397.1| protein export protein SecF [Moritella sp. PE36] gi|149808278|gb|EDM68217.1| protein export protein SecF [Moritella sp. PE36] Length = 314 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 164/299 (54%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F +I I FM+ +S L I SI + G+N+G+DF GG + V ++P Sbjct: 1 MFEIIKTKRTIHFMKMTKPAFILSALLVILSISSIAIKGINWGLDFTGGTVIEVGYDKPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL ++R L + D Q+F ++ L+RL + G + V + Sbjct: 61 DLEIIRPLLSAEGFDDAVIQHFGSSRDVLIRLAPREGLDN--EHLGSQVITALQGYDKSV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL +G + ++ + I +L+Y+ +RF+W A GA+ L D+ TLG Sbjct: 119 EMRRIEFVGPNVGDELAEQGGLALLAALICILLYVGVRFEWRLASGAVLALAHDVIITLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ IEF+LT +AA+LT+IGYS+ND +VV+DR+R+N + +++D S+ +TL Sbjct: 179 IFSVLQIEFDLTILAALLTVIGYSLNDTIVVFDRIRENFRRM-RIDDAVEIMDVSLTQTL 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS + ++ + + GG++I FA+ + G+VV SSI++A+ + L + R Sbjct: 238 SRTLITSGTTLMVLVSLFLKGGALIHGFALALLIGVVVGTYSSIYVASALALRLGVCRE 296 >gi|188997668|ref|YP_001931919.1| protein-export membrane protein SecF [Sulfurihydrogenibium sp. YO3AOP1] gi|188932735|gb|ACD67365.1| protein-export membrane protein SecF [Sulfurihydrogenibium sp. YO3AOP1] Length = 307 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 163/303 (53%), Gaps = 2/303 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + + I F++ R G GIS+ I S L FT G N G+DF GG + V N+ + Sbjct: 1 MRNFMVEPPNIDFLKIRKIGYGISLSLLILSFVLFFTKGFNLGLDFTGGTSIQVKFNQQI 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +S +R+ L+ + + D Q K+ V ++ + + ++ K ++ Sbjct: 61 RVSDIRNLLKDVDLADSLIQEVGTNKD-EVEIRVPAKKGSSSVVLEKVKKALDSKYQGQY 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I+ E + + E+ + + ++ + +L+++ R++ FA+ A+ L D TLG Sbjct: 120 EIRKVEFIDALVGSEMAKASVYSMVFVMLGILLFVGYRYEPLFAIAAVIPLFHDAIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L G E +LT +AA+LT++GYS+ND ++V+DR+R+N+K + +I++SINE L Sbjct: 180 IFSLLGKEIDLTVIAAILTVLGYSLNDTIIVFDRIRENIKARGRK-NMESIINRSINENL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ TS A SV+ + +GG + +FA+ + GIV SSI++AAP++L + Sbjct: 239 ARTIITSGTALFSVIAIYFFGGESLQNFALALLIGIVFGTYSSIYVAAPLILEVEKILRA 298 Query: 830 NAR 832 A+ Sbjct: 299 KAK 301 >gi|84387609|ref|ZP_00990626.1| protein export protein SecD [Vibrio splendidus 12B01] gi|84377454|gb|EAP94320.1| protein export protein SecD [Vibrio splendidus 12B01] Length = 618 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 154/524 (29%), Positives = 274/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L++E I Sbjct: 104 NLAASTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMQKLVGQQEEAFRSELREEKI 163 Query: 87 GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + + + Q D + + Sbjct: 164 RYRAIRPSGKDAVEVILRNEEQLAEAKSLLQSKHQ--------DMTFVDSESNGRFSLVA 215 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 216 RFTDARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275 Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V + G +D DG +++ +V + G + ++ Sbjct: 276 LGATATLEFREVDSSADLAAAASGRAPAGSEIKQDRDGRPVVLKKRVILGGSSITD-ASS 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + +R NIGK +A V Sbjct: 335 SVDEYGRPQVNISLDSEGGSKMSTFSRQNIGKLMATVFAEYKDSGRKTPEGRVILSKHEE 394 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 VINQATIQSALGRNFRITGIDSTAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A+V G+ ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 455 MGIMAMVWGMAAVMLFTLLYYRTFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 514 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT L+ ++LF G Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLLTAIILFAVG 574 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++K + I Sbjct: 575 TGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLMYGGKRVKKLSI 618 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 90/213 (42%), Gaps = 5/213 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G + + ++ +I +GP + ++ I GI+ ++ A Sbjct: 407 RNFRITGIDSTAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIMAMVWGMAA 466 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 467 VMLFTLLYYR-TFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ ++ + + G I FA Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLLTAIILFAVGTGAIKGFA 582 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ GI+ + ++I I+ +Y + Sbjct: 583 VTLSIGILTSMFTAIVGTRCIVNLMYGGKRVKK 615 >gi|94986493|ref|YP_594426.1| preprotein translocase subunit SecD [Lawsonia intracellularis PHE/MN1-00] gi|94730742|emb|CAJ54104.1| Preprotein translocase subunit SecF [Lawsonia intracellularis PHE/MN1-00] Length = 527 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 189/535 (35%), Positives = 284/535 (53%), Gaps = 20/535 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M++ PW + + I + ++ LP+ P +P +I+LGLDL+GG HL L V Sbjct: 1 MKSLPWRITISLFILILSIIYVLPSI-PFIDNSIIGKYLPDTKINLGLDLKGGIHLTLGV 59 Query: 61 DEDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 D + V+ L + +LRS I + L F R ++ Sbjct: 60 DVNTAVSNALVLTGQDLRSTASKNGLTILKTKITPDG---QLEFLLPRKEQE-----NDL 111 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + + + +Q + + A+EQ++ IR RIDQ G+SE Sbjct: 112 EELIVKSYPQLVLSKPTTIDGSLKYYAHFTQQAKISIENMALEQAIRTIRNRIDQFGVSE 171 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR------- 231 I++ + RI IQLPG D +R L+G TA ++FH V + + + Sbjct: 172 PDIRKQDNFRIQIQLPGLTDSTRAIHLIGQTAHLTFHIVRDDLQQNTPLPSGVRLFPQVI 231 Query: 232 --FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 S +E + ++G +++ A NFD K +K V +SF+ GA+ F +T +N Sbjct: 232 FYPDGTSREILIPLEREPVMTGENISDARPNFDDKNNKAYVALSFNSQGAKMFERITAEN 291 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 I K +A+VLDG++ +AP I + I GKA ISGNFT+ A L+ +LRAGSLP + I+EE Sbjct: 292 IKKRMAIVLDGKIYSAPTIQERISGGKASISGNFTMAEAQDLSIILRAGSLPAPVTILEE 351 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R+VG LG +SI KG A + G +++ M + YG GL+AD + + L LA L+ G Sbjct: 352 RSVGPSLGEESIEKGMLAAIVGGFAVLIIMPLYYGLSGLLADVMLLFTMTLLLAGLAAFG 411 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 ATLTLP IAGIVL IG++VD+N+L+ ERIREE +K ++ GF RA +I DSN+T Sbjct: 412 ATLTLPGIAGIVLTIGMSVDANVLIFERIREELKKGLMPLKAVIAGFDRASISIMDSNVT 471 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +IA +L+ FG G VRGFA+T+ L I+ SMFTAI + + +R K K++ Sbjct: 472 TIIAAAILYQFGTGPVRGFAVTLSLGIIASMFTAIFVSYTCFLLWLRKSKKKTLS 526 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 80/175 (45%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + E I KG++ I+ A+LI + + + L A L+ +T L A FG Sbjct: 353 SVGPSLGEESIEKGMLAAIVGGFAVLIIMPLYYGLS-GLLADVMLLFTMTLLLAGLAAFG 411 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ IG SV+ V++++R+R+ +K + + + + + Sbjct: 412 ATLTLPGIAGIVLTIGMSVDANVLIFERIREELK---KGLMPLKAVIAGFDRASISIMDS 468 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ I+ + +G + FA+ ++ GI+ + ++IF++ L K Sbjct: 469 NVTTIIAAAILYQFGTGPVRGFAVTLSLGIIASMFTAIFVSYTCFLLWLRKSKKK 523 >gi|302342507|ref|YP_003807036.1| protein-export membrane protein SecF [Desulfarculus baarsii DSM 2075] gi|301639120|gb|ADK84442.1| protein-export membrane protein SecF [Desulfarculus baarsii DSM 2075] Length = 408 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 160/349 (45%), Gaps = 50/349 (14%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPV 589 LI I I F+ R+ S L + ++ +L +G YG+DF GG+ + V N+ Sbjct: 1 MELIRPDINIDFIGKRYLAFAASGLLILMTVIVLAINGGPRYGVDFAGGVLVQVRFNKAT 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL- 648 D ++ L L + D + Q F G+ ++ + D ++ + Sbjct: 61 DAGQIKKALAPLGMADATVQFFGGDDKREFLVRTEKQDMDMTGLGDKINQTLAQAYGQGE 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK------------------- 689 ++ E+VGPK+ +L K ++ ++ S + + +YI RF+ Sbjct: 121 FEVRRVEMVGPKVGHDLREKALLAILYSILMIAVYISGRFEGKWALAGLMAAVLVGVTLL 180 Query: 690 -----------------------------WYFALGAITTLILDITKTLGFFALFGIEFNL 720 +ALGAI L+ D+ T+G F+L EF L Sbjct: 181 VEAISGGAGAVTLIVIAMAVTMAACWYLKLRYALGAIVALLHDVIITVGVFSLLDKEFTL 240 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 VAA+LT+IGYS+ND ++V+DR+R+N+ I+ S+N+TL R++ TS Sbjct: 241 ATVAAILTIIGYSLNDTIIVFDRIRENLTKSGGGGDLAQTINASVNQTLSRTILTSGTTL 300 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + ++ + GG VI FA+ + GI V SS+F+A+P+LL + + + + Sbjct: 301 MVLVCLWALGGGVIEDFALALLVGIGVGTYSSVFVASPVLLLLPEGKPR 349 >gi|238752764|ref|ZP_04614233.1| Protein-export membrane protein secD [Yersinia rohdei ATCC 43380] gi|238709022|gb|EEQ01271.1| Protein-export membrane protein secD [Yersinia rohdei ATCC 43380] Length = 604 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 161/524 (30%), Positives = 285/524 (54%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ PS + K + LGLDLRGG H ++EVD D + + D LR+ L+++ I Sbjct: 93 NLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R++ N + + F D + +++ ++ + ++ + + Sbjct: 153 PYATVRKLDNYGVEVRFRDDKTRDDAISYLSSRHR-----------DLVIGSNGSNALKA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++ Sbjct: 202 VMSDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N G +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNSNVDATVAASGRVPGDSEVKSTREGRPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D + V+IS D G T+DNIGKP+A + + Sbjct: 322 TDEYN-QAQVNISLDSAGGSLMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 380 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q+ +I+G A L+ +LRAG+L + IVEER +G LGS +I Sbjct: 381 VINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIT 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GL + +LFM++ Y K+G++A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 441 QGLEACLWGLAVSILFMVIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE R ++V ++ G+ A+S+I D+N+T LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEEYRNGRTVQQAIHEGYKGAFSSIVDANVTTLITAIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT + ++ SMFTAI RA++ K++ + I Sbjct: 561 TGSIKGFAITTAIGVITSMFTAIVGTRAIVNLFYGGKRINKLSI 604 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 77/177 (43%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ I ++ F + A T L+ ++ +G +L Sbjct: 429 TIGPTLGSQNITQGLEACLWGLAVSILFMVIYYR-KFGVIASTALLANLVLIVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTVQQAIHEGYKGAFSSIVD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G++ + ++I I+ Y + N Sbjct: 545 ANVTTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLFYGGKRINK 601 >gi|238755135|ref|ZP_04616482.1| Protein-export membrane protein secD [Yersinia ruckeri ATCC 29473] gi|238706695|gb|EEP99065.1| Protein-export membrane protein secD [Yersinia ruckeri ATCC 29473] Length = 604 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 162/537 (30%), Positives = 289/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + + LGLDLRGG H ++EVD D + + Sbjct: 89 VIALNLAPATPTWLARLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D +RS L+++GI ++R++ N + + F D + ++ ++ + Sbjct: 140 MDTMRSDLREKGIPYAAVRKLDNYGVEVRFRDDKARDEAISYLSSRHR-----------D 188 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + + V+S + + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++ Sbjct: 189 LVINSNGSNTLKAVMSDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVE 248 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNTNVDGSVAASGRVPGDSEVKNTREGRPVVLYKRV 308 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 309 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKK 367 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 368 DANGRAILVKQEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEE 427 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM+V Y K+G++A ++ N++L + ++SLL Sbjct: 428 RTIGPTLGSQNITQGLEACLWGLAVSILFMVVYYRKFGVIASTALLANLVLIVGVMSLLP 487 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE + +S+ ++ G+ A+S+I D+N+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEFKNGRSIQQAIHEGYKGAFSSIIDANV 547 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 429 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ K S + I + + Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEFK---NGRSIQQAIHEGYKGAFSSIID 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G++ + ++I I+ +Y + N Sbjct: 545 ANVTTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|170767664|ref|ZP_02902117.1| protein-export membrane protein SecD [Escherichia albertii TW07627] gi|170123152|gb|EDS92083.1| protein-export membrane protein SecD [Escherichia albertii TW07627] Length = 604 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 291/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D+ ++ ++ ++ + ++ Sbjct: 153 PYTTVRKENNYGLSITFRDANTRDEAIAYLSKR-----------HPDLVISSQGSNQLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNIDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLLVSILFMILFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ + N ++ L G + + + Sbjct: 358 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + + ++++ + +K F L A + LI ++ Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMILFYK-KFGLIATSALIANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 477 ILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I V+ + G I FAI G+ + ++I I+ + Sbjct: 534 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593 Query: 824 YDWRAKNA 831 Y + Sbjct: 594 YGGKRVKK 601 >gi|157146976|ref|YP_001454295.1| preprotein translocase subunit SecD [Citrobacter koseri ATCC BAA-895] gi|157084181|gb|ABV13859.1| hypothetical protein CKO_02753 [Citrobacter koseri ATCC BAA-895] Length = 604 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 290/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIKAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ + ++ + + Sbjct: 153 PYTTVRKEDNYGLSITFRDNKARDEAISYLSGRHR-----------DLVITSQGNTVLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYKGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 79/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + L+ ++ +G +L Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYKGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + N Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|261494986|ref|ZP_05991455.1| preprotein translocase subunit SecF [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309395|gb|EEY10629.1| preprotein translocase subunit SecF [Mannheimia haemolytica serotype A2 str. OVINE] Length = 324 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 161/293 (54%), Gaps = 4/293 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM+ R+ G S++ + I + T G N+G+DF GG + ++P DL+ +R Sbjct: 16 PYKLIPFMKYRYVGFIFSLIVTALCIFTIATKGFNWGLDFTGGTVIETQFSQPADLAKLR 75 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + LE+ G+ Q +K+ ++RL G+ +V+EM+ +K+ P +TI++ E Sbjct: 76 TELENSGYGNALVQTTGSQKDLMIRLAASAGNMSVGNKVMEMIHQKL---DPNATIKSIE 132 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + +LIY+ RF+W A+G I L D+ T+G F+ Sbjct: 133 FVGPNVGEELTQGAIYATLATLAMLLIYVGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQ 192 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N S S + +++TL R++ T Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKVRRSSSIEIIDIS-LSQTLSRTLMT 251 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S+ VL + GG + SF++ + GI SSI+IA + L + R Sbjct: 252 SVTTLFVVLALFYLGGPTLHSFSLALLIGIGFGTYSSIYIAIGVALQLGLKRE 304 >gi|237756763|ref|ZP_04585258.1| protein-export membrane protein SecF [Sulfurihydrogenibium yellowstonense SS-5] gi|237691079|gb|EEP60192.1| protein-export membrane protein SecF [Sulfurihydrogenibium yellowstonense SS-5] Length = 307 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 92/304 (30%), Positives = 163/304 (53%), Gaps = 3/304 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + + I F++ R G GIS+ I S L FT G N G+DF GG + V N+ + Sbjct: 1 MRNFMVEPPNIDFLKIRKIGYGISLSLLILSFVLFFTRGFNLGLDFTGGTSIQVKFNQQM 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +S VR+ L+ + + D Q K+ V ++ + + ++ K ++ Sbjct: 61 RVSDVRNLLKDVDLADSLIQEVGTNKD-EVEIRVPAKKGSSSVVLEKVKKALDSKYQGRY 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I+ E + + E+ + + +I + +L+++ R++ FA+ A+ L D TLG Sbjct: 120 EIRKVEFIDALVGSEMAKASVYSMIFVMLGILLFVGYRYEPLFAIAAVIPLFHDAIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L G E +LT +AA+LT++GYS+ND ++V+DR+R+N+K + +I++SINE L Sbjct: 180 IFSLLGKEIDLTVIAAILTVLGYSLNDTIIVFDRIRENIKARGRK-NMESIINRSINENL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD-WRA 828 R++ TS A SV+ + +GG + +FA+ + GIV SSI++A P++L + R Sbjct: 239 ARTIITSGTALFSVIAIYFFGGESLQNFALALLIGIVFGTYSSIYVAGPLILEVEKILRE 298 Query: 829 KNAR 832 K + Sbjct: 299 KTKK 302 >gi|121998475|ref|YP_001003262.1| preprotein translocase subunit SecD [Halorhodospira halophila SL1] gi|121589880|gb|ABM62460.1| protein-export membrane protein SecD [Halorhodospira halophila SL1] Length = 618 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 162/522 (31%), Positives = 279/522 (53%), Gaps = 36/522 (6%) Query: 32 LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 + P + + LGLDLRGG H +L+VD D V ++ + ++R+ ++E I Sbjct: 105 VPATPQWLRAMGAEPMFLGLDLRGGVHFLLQVDIDAMVGETMEGHQQDIRTLFREERIRF 164 Query: 89 FSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147 ++ + +I ++FAD + + + + + Sbjct: 165 SALEVTDEQQIRMAFAD--------TDLRARALEALEEHIEGLNYSEEEDEDTYTLIASM 216 Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 + + ++ A++Q++ +R R+D++G++E IQR G+ RI++QLPG QDP + +++LG Sbjct: 217 DEEELQEMKDLAVQQNITTLRNRVDELGVAEPVIQRQGADRIVVQLPGIQDPGQAKEILG 276 Query: 208 TTAKMSFHKVLPNNSK-----KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 TA + F V N G DG +E + +SG + A++ FD Sbjct: 277 ATATLEFRFVDHANFPFTGDPDDPPEGSEVFPQRDGGYVALERQRILSGDRIIDASSGFD 336 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI---------- 312 ++ P V+I G R TRD +G +AV+ R+ +++ Sbjct: 337 QESGSPEVNIRLSGTGGRIMNRATRDRVGDHMAVLFQERISETQMVDGEPERVIRELEEV 396 Query: 313 ---------PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 + +I+G + + A LA +LRAG+L ++IVEER +G LG++++ + Sbjct: 397 ISVARIREGLGSRFRITGLDSSQEASNLALLLRAGALAAPIDIVEERTIGPSLGAENVER 456 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G A+V G +L++ FM + Y +GLVA+ ++ N+++ +A+LS+L ATLTLP IAGIVL Sbjct: 457 GFMAVVIGFLLVIAFMALYYRTFGLVANLALLSNLVIIVAVLSMLQATLTLPGIAGIVLT 516 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ +RIREE + + ++D G+ +A STI D+N+T LIA +VLF FG G Sbjct: 517 VGMAVDANVLIFQRIREELKAGAPIQTAIDAGYGKALSTIADANVTTLIAALVLFLFGTG 576 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFA+T+ + + SMFTAI RA++ I +K+ + I Sbjct: 577 PVQGFAVTLAIGLATSMFTAIVGTRAVINLIYGGRKVSELKI 618 Score = 157 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 87/201 (43%), Gaps = 4/201 (1%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 +Q + + + I +GP + E + +G + V+I + ++ ++ + Sbjct: 416 DSSQEASNLALLLRAGALAAPIDIVEERTIGPSLGAENVERGFMAVVIGFLLVIAFMALY 475 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F L A L+ ++ + ++ L +A ++ +G +V+ V+++ R+R+ Sbjct: 476 YR-TFGLVANLALLSNLVIIVAVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREE 534 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 +K + ID + L ++ I+ L + ++G + FA+ +A G+ Sbjct: 535 LKA---GAPIQTAIDAGYGKALSTIADANVTTLIAALVLFLFGTGPVQGFAVTLAIGLAT 591 Query: 808 AASSSIFIAAPILLFIYDWRA 828 + ++I ++ IY R Sbjct: 592 SMFTAIVGTRAVINLIYGGRK 612 >gi|16126233|ref|NP_420797.1| protein-export membrane protein SecF [Caulobacter crescentus CB15] gi|13423457|gb|AAK23965.1| protein-export membrane protein SecF [Caulobacter crescentus CB15] Length = 317 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 3/303 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-L 584 L+P + F++ IS + S+ +F GLN GIDFKGG + V Sbjct: 1 MAWPLIKLLPQKTNLTFVKFARIMAVISATLVVASLIGVFKPGLNLGIDFKGGSVMEVST 60 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 A R VDL+ VR+ LE+ +GD+ Q F LVR Q G T + + Sbjct: 61 APRAVDLAKVRTTLEAQGLGDVQVQAFGSPDRALVRFQTPAGGDPGVT-LTNVKTALKQS 119 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 + N VGPK+S EL R GI+ ++++ M +YIW RF+ F LGA+ L+ D+ Sbjct: 120 LGDPVQFINPSAVGPKVSGELFRSGILALVLAVGLMFVYIWFRFEPQFGLGAVAGLLHDL 179 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 T GF LF IEF+L VAA+LT+IGYS+ND VVV+DR+R+N++ Y + +D+ID S Sbjct: 180 ILTFGFIVLFKIEFSLNTVAALLTVIGYSMNDTVVVFDRLRENLRKY-KKMPLKDVIDLS 238 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 INE + R++ T + A +++ +A++GG + F++ M FGI V SSI++ API+L Sbjct: 239 INEIVSRTIITGVTAIMALTGLAIFGGDALFGFSVVMIFGIAVGTYSSIYVGAPIILLWG 298 Query: 825 DWR 827 R Sbjct: 299 VKR 301 >gi|221235006|ref|YP_002517442.1| protein translocase subunit SecF [Caulobacter crescentus NA1000] gi|220964178|gb|ACL95534.1| protein translocase subunit secF [Caulobacter crescentus NA1000] Length = 321 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 3/303 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-L 584 L+P + F++ IS + S+ +F GLN GIDFKGG + V Sbjct: 5 MAWPLIKLLPQKTNLTFVKFARIMAVISATLVVASLIGVFKPGLNLGIDFKGGSVMEVST 64 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 A R VDL+ VR+ LE+ +GD+ Q F LVR Q G T + + Sbjct: 65 APRAVDLAKVRTTLEAQGLGDVQVQAFGSPDRALVRFQTPAGGDPGVT-LTNVKTALKQS 123 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 + N VGPK+S EL R GI+ ++++ M +YIW RF+ F LGA+ L+ D+ Sbjct: 124 LGDPVQFINPSAVGPKVSGELFRSGILALVLAVGLMFVYIWFRFEPQFGLGAVAGLLHDL 183 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 T GF LF IEF+L VAA+LT+IGYS+ND VVV+DR+R+N++ Y + +D+ID S Sbjct: 184 ILTFGFIVLFKIEFSLNTVAALLTVIGYSMNDTVVVFDRLRENLRKY-KKMPLKDVIDLS 242 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 INE + R++ T + A +++ +A++GG + F++ M FGI V SSI++ API+L Sbjct: 243 INEIVSRTIITGVTAIMALTGLAIFGGDALFGFSVVMIFGIAVGTYSSIYVGAPIILLWG 302 Query: 825 DWR 827 R Sbjct: 303 VKR 305 >gi|45440591|ref|NP_992130.1| preprotein translocase subunit SecD [Yersinia pestis biovar Microtus str. 91001] gi|108808675|ref|YP_652591.1| preprotein translocase subunit SecD [Yersinia pestis Antiqua] gi|145600083|ref|YP_001164159.1| preprotein translocase subunit SecD [Yersinia pestis Pestoides F] gi|149364965|ref|ZP_01887000.1| protein-export membrane protein SecD [Yersinia pestis CA88-4125] gi|153949040|ref|YP_001402081.1| preprotein translocase subunit SecD [Yersinia pseudotuberculosis IP 31758] gi|162421847|ref|YP_001607725.1| preprotein translocase subunit SecD [Yersinia pestis Angola] gi|165926553|ref|ZP_02222385.1| protein-export membrane protein SecD [Yersinia pestis biovar Orientalis str. F1991016] gi|165935995|ref|ZP_02224565.1| protein-export membrane protein SecD [Yersinia pestis biovar Orientalis str. IP275] gi|166011056|ref|ZP_02231954.1| protein-export membrane protein SecD [Yersinia pestis biovar Antiqua str. E1979001] gi|166213006|ref|ZP_02239041.1| protein-export membrane protein SecD [Yersinia pestis biovar Antiqua str. B42003004] gi|167398883|ref|ZP_02304407.1| protein-export membrane protein SecD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421638|ref|ZP_02313391.1| protein-export membrane protein SecD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|218930219|ref|YP_002348094.1| preprotein translocase subunit SecD [Yersinia pestis CO92] gi|229838794|ref|ZP_04458953.1| SecYEG protein translocase auxillary subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896052|ref|ZP_04511222.1| SecYEG protein translocase auxillary subunit [Yersinia pestis Pestoides A] gi|229899362|ref|ZP_04514505.1| SecYEG protein translocase auxillary subunit [Yersinia pestis biovar Orientalis str. India 195] gi|45435448|gb|AAS61007.1| protein-export membrane protein SecD [Yersinia pestis biovar Microtus str. 91001] gi|108780588|gb|ABG14646.1| protein-export membrane protein SecD [Yersinia pestis Antiqua] gi|115348830|emb|CAL21784.1| protein-export membrane protein SecD [Yersinia pestis CO92] gi|145211779|gb|ABP41186.1| protein-export membrane protein SecD [Yersinia pestis Pestoides F] gi|149291378|gb|EDM41452.1| protein-export membrane protein SecD [Yersinia pestis CA88-4125] gi|152960535|gb|ABS47996.1| protein-export membrane protein SecD [Yersinia pseudotuberculosis IP 31758] gi|162354662|gb|ABX88610.1| protein-export membrane protein SecD [Yersinia pestis Angola] gi|165916140|gb|EDR34747.1| protein-export membrane protein SecD [Yersinia pestis biovar Orientalis str. IP275] gi|165921481|gb|EDR38678.1| protein-export membrane protein SecD [Yersinia pestis biovar Orientalis str. F1991016] gi|165990056|gb|EDR42357.1| protein-export membrane protein SecD [Yersinia pestis biovar Antiqua str. E1979001] gi|166205793|gb|EDR50273.1| protein-export membrane protein SecD [Yersinia pestis biovar Antiqua str. B42003004] gi|166960557|gb|EDR56578.1| protein-export membrane protein SecD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051387|gb|EDR62795.1| protein-export membrane protein SecD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229687764|gb|EEO79837.1| SecYEG protein translocase auxillary subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229695160|gb|EEO85207.1| SecYEG protein translocase auxillary subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700975|gb|EEO89004.1| SecYEG protein translocase auxillary subunit [Yersinia pestis Pestoides A] Length = 615 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 163/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P++L + + + LGLDLRGG H ++EVD D + + Sbjct: 100 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LR+ L+++ I ++R++ N + + F D + + + ++ + Sbjct: 151 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 199 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + + V+S + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 200 LVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 319 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 320 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKK 378 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 379 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 438 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM+V Y K+G++A ++ N++L + ++SLL Sbjct: 439 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 498 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+NI Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 558 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 559 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 615 Score = 137 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 440 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 556 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 612 Score = 40.4 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ +GLL ALPN + + Sbjct: 4 RYPLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 L D L + I S+ I F D + + + L Sbjct: 42 GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREALVEAL 95 >gi|120554044|ref|YP_958395.1| preprotein translocase subunit SecD [Marinobacter aquaeolei VT8] gi|120323893|gb|ABM18208.1| protein-export membrane protein SecD [Marinobacter aquaeolei VT8] Length = 624 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 158/522 (30%), Positives = 274/522 (52%), Gaps = 37/522 (7%) Query: 32 LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 P + + LGLDLRGG H +LEVD + +N L+ S +++ L++E I Sbjct: 107 APSTPGWLRSLGAGPMKLGLDLRGGVHFLLEVDMETALNQRLEALSGQIKRELREERIRY 166 Query: 89 FS-MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147 + Q +I LSF D + + V + ++ L +++ L Sbjct: 167 RGGDIEDQARIVLSFRDEAARSEAFELVRDQYNEFLLDETTEGEEFL--------LTLTL 218 Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 S+ + + +A+EQ++ IR R++++G++E +QR G+ RI+++LPG QD ++ +++LG Sbjct: 219 SEAEVRNIQEYALEQNLTTIRNRVNELGVAEPLVQRQGADRIIVELPGVQDTAQAKRVLG 278 Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 TA + F RD+ +E V +G ++ A FD + Sbjct: 279 ATANLEFRMEA-RQDAPSAETEQFPFRDNPQRTARLERDVIATGNNVANAQQAFDENG-Q 336 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV-------------------- 307 P V+I+ D +G TR++IG+ +AV+ Sbjct: 337 PQVNITMDSVGGDLMNRATRNSIGRRMAVLFIEYRTETETREVNGEIVETENRVVEKGII 396 Query: 308 ---INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 Q+ +I+G +I A LA +LRAG+L + V+ER +G LG +I G Sbjct: 397 SLATVQSALGSSFRITGLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAG 456 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 +++ G L++L+M+V Y +GLVA+ ++ LN++L +A +S+L ATLTLP IAGIVL + Sbjct: 457 MMSVMLGFGLVLLYMLVFYRGFGLVANVALTLNLMLLVACMSILSATLTLPGIAGIVLTV 516 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ ERI+EE + +++ G+ RA+ +IFD+NIT L+ V+LF G G Sbjct: 517 GMAVDANVLIFERIKEELKAGVPPQSAINAGYGRAFVSIFDANITTLLVAVILFAMGSGP 576 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 V+GFA+T+ + IL SMF+ + + R ++ + ++++ + I Sbjct: 577 VKGFAVTLCIGILTSMFSGLMVSRGIVNLVYGGRRVEKLSIG 618 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 92/248 (37%), Gaps = 4/248 (1%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + ++ + + ++ L G + Sbjct: 368 IEYRTETETREVNGEIVETENRVVEKGIISLATVQSALGSSFRITGLDSIPEAAELALLL 427 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + +GP + ++ I G++ V++ +L+Y+ + ++ F L A L Sbjct: 428 RAGALAAPMYFVQERTIGPSLGQKNIDAGMMSVMLGFGLVLLYMLVFYR-GFGLVANVAL 486 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 L++ + ++ L +A ++ +G +V+ V++++R+++ +K + + Sbjct: 487 TLNLMLLVACMSILSATLTLPGIAGIVLTVGMAVDANVLIFERIKEELKA---GVPPQSA 543 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 I+ ++ + + + G + FA+ + GI+ + S + ++ I+ Sbjct: 544 INAGYGRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCIGILTSMFSGLMVSRGIV 603 Query: 821 LFIYDWRA 828 +Y R Sbjct: 604 NLVYGGRR 611 Score = 42.4 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 50/526 (9%), Positives = 134/526 (25%), Gaps = 38/526 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ IG + ALPNF P + A RG + Sbjct: 4 KYPLWKNLVIVFALVIGFIYALPNFFPDDYAIQITGA------------RGST------- 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 + L +L + + + I L+ +D + V L Sbjct: 45 --EVEQRVLDRALAKLEQE--GIEVKSSLLEERDALIRLTSSDEQL--RARPAVQAALGN 98 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174 LN+ P + + + + + A+ Q +E + +I + Sbjct: 99 EYLVALNMAPSTPGWLRSLGAGPMKLGLDLRGGVHFLLEVDMETALNQRLEALSGQIKRE 158 Query: 175 GISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232 E R + I L + +R + + + + F+ + Sbjct: 159 LREERIRYRGGDIEDQARIVLSFRDEAARSEAFELVRDQYNEFLLDETTEGEEFLLTLTL 218 Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 N + ++ I + + Sbjct: 219 SEAEVRNIQEYALEQNLTTIRNRVNELGVAEPLVQRQGADRIIVELPGVQDTAQAKRVLG 278 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL----AAMLRAGSLPIKLNIVE 348 A + + + + T + + A + + Sbjct: 279 ATANLEFRMEARQDAPSAETEQFPFRDNPQRTARLERDVIATGNNVANAQQAFDENGQPQ 338 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 +G D + + T + + ++ + V + + + L Sbjct: 339 VNITMDSVGGDLMNRATRNSIGRRMAVLFIEYRTETETREVNGEIVETENRVVEKGIISL 398 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 + + + G+ ++ L +G S I + Sbjct: 399 ATVQSALGSSFRITGLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMM 458 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 + ++ ++ + RGF + +++ +++ ++ + + + Sbjct: 459 SVMLGFGLVLLYMLVFYRGFGLVANVALTLNLMLLVACMSILSATL 504 >gi|301025427|ref|ZP_07188978.1| protein-export membrane protein SecD [Escherichia coli MS 69-1] gi|300396029|gb|EFJ79567.1| protein-export membrane protein SecD [Escherichia coli MS 69-1] Length = 604 Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGNNQLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + + ++++ I +K F L A + LI ++ +G +L Sbjct: 429 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601 >gi|157369306|ref|YP_001477295.1| preprotein translocase subunit SecD [Serratia proteamaculans 568] gi|157321070|gb|ABV40167.1| protein-export membrane protein SecD [Serratia proteamaculans 568] Length = 615 Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 168/538 (31%), Positives = 282/538 (52%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D ++ + Sbjct: 99 FVVALNLAPATPAWLAMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALSKLQEQ 149 Query: 73 YSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+++GI S+R+ N + + F D ++ S L + Sbjct: 150 TMDTLRSELREKGIPYASIRKLDNNGVEVRFRDDAARDQAI-----------SYLGPRQR 198 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 + + L+ + + +A++Q++ I+R R++Q+G++E +QR GS RI++ Sbjct: 199 DMVFSANGTNTLKANLTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVV 258 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V N G +G ++ + Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNTNADTTAAANGRVPGDSEVKDTREGQPVVLYKR 318 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T++ D +P V+IS D G T+DNIGKP+A + + Sbjct: 319 VILTGDHITDSTSSTDEYN-QPQVNISLDSTGGTAMSNFTKDNIGKPMATLFVEYKDSGK 377 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 Q+ +I+G A L+ +LRAG+L + IVE Sbjct: 378 KDANGRAVLVKQEEVINVANIQSRLGNSFRITGIGNPNEARQLSLLLRAGALIAPIQIVE 437 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A + GLV ++FM+V Y K+G++A ++ N++L + ++SLL Sbjct: 438 ERTIGPTLGQQNITQGLEACLWGLVASIVFMVVWYRKFGMIATTALVANLVLIVGVMSLL 497 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE + +SV ++ G+ A+S+I D+N Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSVQQAIHEGYKGAFSSIVDAN 557 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IT LI ++L+ G G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 558 ITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 615 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 81/177 (45%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + ++ I +G+ + +A ++++ + ++ F + A T L+ ++ +G +L Sbjct: 440 TIGPTLGQQNITQGLEACLWGLVASIVFMVVWYR-KFGMIATTALVANLVLIVGVMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ +K S + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSVQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+ + ++I I+ +Y + N Sbjct: 556 ANITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINK 612 Score = 42.8 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 37/217 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ IGLL ALPN + + Sbjct: 4 RYPLWKYLMLIVVIIIGLLYALPNLYGEDPA---------------------VQIT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD----KVTL 117 L R+ L+K+ I S+ I F++ + + ++ Sbjct: 42 GVAASETTLDQV----RTVLEKDKIASKSIALENGAILARFSNPDIQLRAREALMAELGD 97 Query: 118 FLQGVNSKLNVDP-------KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170 + P + + + + L + ++D +S EQ+M+ +R Sbjct: 98 KFVVALNLAPATPAWLAMLGAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQTMDTLRSE 157 Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 + + GI ++I++L ++ + ++ + + LG Sbjct: 158 LREKGIPYASIRKLDNNGVEVRFRDDAARDQAISYLG 194 >gi|51595280|ref|YP_069471.1| preprotein translocase subunit SecD [Yersinia pseudotuberculosis IP 32953] gi|108811063|ref|YP_646830.1| preprotein translocase subunit SecD [Yersinia pestis Nepal516] gi|167423453|ref|ZP_02315206.1| protein-export membrane protein SecD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229901291|ref|ZP_04516413.1| SecYEG protein translocase auxillary subunit [Yersinia pestis Nepal516] gi|51588562|emb|CAH20170.1| preprotein translocase, IISP family, part of the channel [Yersinia pseudotuberculosis IP 32953] gi|108774711|gb|ABG17230.1| protein-export membrane protein SecD [Yersinia pestis Nepal516] gi|167057623|gb|EDR67369.1| protein-export membrane protein SecD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681220|gb|EEO77314.1| SecYEG protein translocase auxillary subunit [Yersinia pestis Nepal516] gi|320016376|gb|ADV99947.1| SecYEG protein translocase auxillary subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 615 Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 163/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P++L + + + LGLDLRGG H ++EVD D + + Sbjct: 100 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LR+ L+++ I ++R++ N + + F D + + + ++ + Sbjct: 151 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 199 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + + V+S + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 200 LVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 319 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 320 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGATMSNFTKDNIGKPMATLFVEYKDSGKK 378 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 379 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 438 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM+V Y K+G++A ++ N++L + ++SLL Sbjct: 439 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 498 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+NI Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 558 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 559 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 615 Score = 137 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 440 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 556 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 612 Score = 40.4 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ +GLL ALPN + + Sbjct: 4 RYPLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 L D L + I S+ I F D + + + L Sbjct: 42 GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREALVEAL 95 >gi|295096809|emb|CBK85899.1| protein-export membrane protein SecD [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 604 Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 168/537 (31%), Positives = 293/537 (54%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 89 VVALNLAPATPRWLAALNAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQN 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LRS L+ +GI ++R+ N ++++F DS ++ ++ + Sbjct: 140 IDSLRSDLRDKGIPYTTVRKEDNYGLSITFRDSAARDQAVTYLSQRHR-----------D 188 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + ++ V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++ Sbjct: 189 LVITSQGSNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVE 248 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N + G + +G ++ +V Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRV 308 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302 ++G H+ +T++ + ++P V+IS D G T+DNIGKP+A + Sbjct: 309 ILTGDHITDSTSS-QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKK 367 Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 368 DANGRAVLVKEEEVINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEE 427 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LG +I +G A +AGL + ++FMI Y K+GL+A ++ N++L + ++SLL Sbjct: 428 RTIGPTLGMQNIKQGLEACLAGLAVSIIFMIFFYKKFGLIATSALIANLVLIIGIMSLLP 487 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE +SV +++ G+ A+S+IFD+N+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIEEGYKGAFSSIFDANV 547 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 548 TTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 94/248 (37%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ + + N ++ L G S + + Sbjct: 358 FVEYKDSGKKDANGRAVLVKEEEVINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I++G+ + +I++ +K F L A + LI ++ Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLAVSIIFMIFFYK-KFGLIATSALIANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ + + S + I++ Sbjct: 477 VLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIEE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I VL + G I FAI G+ + ++I I+ + Sbjct: 534 GYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593 Query: 824 YDWRAKNA 831 Y + Sbjct: 594 YGGKRVKK 601 >gi|15800135|ref|NP_286147.1| preprotein translocase subunit SecD [Escherichia coli O157:H7 EDL933] gi|15829713|ref|NP_308486.1| preprotein translocase subunit SecD [Escherichia coli O157:H7 str. Sakai] gi|16128393|ref|NP_414942.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K-12 substr. MG1655] gi|24111786|ref|NP_706296.1| preprotein translocase subunit SecD [Shigella flexneri 2a str. 301] gi|30061903|ref|NP_836074.1| preprotein translocase subunit SecD [Shigella flexneri 2a str. 2457T] gi|74310977|ref|YP_309396.1| preprotein translocase subunit SecD [Shigella sonnei Ss046] gi|82542896|ref|YP_406843.1| preprotein translocase subunit SecD [Shigella boydii Sb227] gi|82775687|ref|YP_402034.1| preprotein translocase subunit SecD [Shigella dysenteriae Sd197] gi|89107278|ref|AP_001058.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K-12 substr. W3110] gi|157156778|ref|YP_001461589.1| preprotein translocase subunit SecD [Escherichia coli E24377A] gi|157159928|ref|YP_001457246.1| preprotein translocase subunit SecD [Escherichia coli HS] gi|162139359|ref|YP_687950.2| preprotein translocase subunit SecD [Shigella flexneri 5 str. 8401] gi|170079994|ref|YP_001729314.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K-12 substr. DH10B] gi|170680742|ref|YP_001742543.1| preprotein translocase subunit SecD [Escherichia coli SMS-3-5] gi|187731876|ref|YP_001879115.1| preprotein translocase subunit SecD [Shigella boydii CDC 3083-94] gi|187776227|ref|ZP_02801299.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4196] gi|188024925|ref|ZP_02774886.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4113] gi|188492596|ref|ZP_02999866.1| protein-export membrane protein SecD [Escherichia coli 53638] gi|189010622|ref|ZP_02808275.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4076] gi|189402367|ref|ZP_02781951.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4401] gi|189403126|ref|ZP_02793360.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4486] gi|189404010|ref|ZP_02786615.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4501] gi|189404807|ref|ZP_02811256.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC869] gi|189405934|ref|ZP_02825292.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC508] gi|191166726|ref|ZP_03028553.1| protein-export membrane protein SecD [Escherichia coli B7A] gi|193065160|ref|ZP_03046233.1| protein-export membrane protein SecD [Escherichia coli E22] gi|193068655|ref|ZP_03049616.1| protein-export membrane protein SecD [Escherichia coli E110019] gi|194428801|ref|ZP_03061336.1| protein-export membrane protein SecD [Escherichia coli B171] gi|194432639|ref|ZP_03064925.1| protein-export membrane protein SecD [Shigella dysenteriae 1012] gi|194438930|ref|ZP_03071015.1| protein-export membrane protein SecD [Escherichia coli 101-1] gi|208807745|ref|ZP_03250082.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4206] gi|208815009|ref|ZP_03256188.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4045] gi|208823285|ref|ZP_03263603.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4042] gi|209400898|ref|YP_002269050.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4115] gi|209917620|ref|YP_002291704.1| preprotein translocase subunit SecD [Escherichia coli SE11] gi|217326442|ref|ZP_03442526.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. TW14588] gi|218552971|ref|YP_002385884.1| preprotein translocase subunit SecD [Escherichia coli IAI1] gi|218688271|ref|YP_002396483.1| preprotein translocase subunit SecD [Escherichia coli ED1a] gi|218693869|ref|YP_002401536.1| preprotein translocase subunit SecD [Escherichia coli 55989] gi|218698687|ref|YP_002406316.1| preprotein translocase subunit SecD [Escherichia coli IAI39] gi|218703690|ref|YP_002411209.1| preprotein translocase subunit SecD [Escherichia coli UMN026] gi|238899696|ref|YP_002925492.1| SecYEG protein translocase auxillary subunit [Escherichia coli BW2952] gi|254160474|ref|YP_003043582.1| preprotein translocase subunit SecD [Escherichia coli B str. REL606] gi|254791589|ref|YP_003076426.1| preprotein translocase subunit SecD [Escherichia coli O157:H7 str. TW14359] gi|260842606|ref|YP_003220384.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli O103:H2 str. 12009] gi|260853628|ref|YP_003227519.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli O26:H11 str. 11368] gi|260866566|ref|YP_003232968.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli O111:H- str. 11128] gi|291281312|ref|YP_003498130.1| Protein-export membrane protein secD [Escherichia coli O55:H7 str. CB9615] gi|293403527|ref|ZP_06647618.1| secD [Escherichia coli FVEC1412] gi|298379139|ref|ZP_06989020.1| protein-export membrane protein secD [Escherichia coli FVEC1302] gi|331640924|ref|ZP_08342059.1| protein-export membrane protein SecD [Escherichia coli H736] gi|331651341|ref|ZP_08352366.1| protein-export membrane protein SecD [Escherichia coli M718] gi|331661783|ref|ZP_08362706.1| protein-export membrane protein SecD [Escherichia coli TA143] gi|331666757|ref|ZP_08367631.1| protein-export membrane protein SecD [Escherichia coli TA271] gi|332281554|ref|ZP_08393967.1| SecYEG protein translocase auxillary subunit [Shigella sp. D9] gi|84028687|sp|P0AG91|SECD_ECO57 RecName: Full=Protein-export membrane protein secD gi|84028688|sp|P0AG90|SECD_ECOLI RecName: Full=Protein-export membrane protein secD gi|84028689|sp|P0AG92|SECD_SHIFL RecName: Full=Protein-export membrane protein secD gi|12513258|gb|AAG54755.1|AE005220_4 protein secretion; membrane protein, part of the channel [Escherichia coli O157:H7 str. EDL933] gi|1773092|gb|AAB40164.1| protein-export membrane protein SecD [Escherichia coli] gi|1786609|gb|AAC73511.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K-12 substr. MG1655] gi|13359916|dbj|BAB33882.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. Sakai] gi|24050573|gb|AAN42003.1| membrane protein [Shigella flexneri 2a str. 301] gi|30040147|gb|AAP15880.1| membrane protein [Shigella flexneri 2a str. 2457T] gi|73854454|gb|AAZ87161.1| SecD [Shigella sonnei Ss046] gi|81239835|gb|ABB60545.1| SecD [Shigella dysenteriae Sd197] gi|81244307|gb|ABB65015.1| SecD [Shigella boydii Sb227] gi|85674548|dbj|BAE76188.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K12 substr. W3110] gi|157065608|gb|ABV04863.1| protein-export membrane protein SecD [Escherichia coli HS] gi|157078808|gb|ABV18516.1| protein-export membrane protein SecD [Escherichia coli E24377A] gi|169887829|gb|ACB01536.1| SecYEG protein translocase auxillary subunit [Escherichia coli str. K-12 substr. DH10B] gi|170518460|gb|ACB16638.1| protein-export membrane protein SecD [Escherichia coli SMS-3-5] gi|187428868|gb|ACD08142.1| protein-export membrane protein SecD [Shigella boydii CDC 3083-94] gi|187768277|gb|EDU32121.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4196] gi|188015877|gb|EDU53999.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4113] gi|188487795|gb|EDU62898.1| protein-export membrane protein SecD [Escherichia coli 53638] gi|188999351|gb|EDU68337.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4076] gi|189356010|gb|EDU74429.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4401] gi|189362493|gb|EDU80912.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4486] gi|189368063|gb|EDU86479.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4501] gi|189373491|gb|EDU91907.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC869] gi|189377421|gb|EDU95837.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC508] gi|190903237|gb|EDV62959.1| protein-export membrane protein SecD [Escherichia coli B7A] gi|192927134|gb|EDV81755.1| protein-export membrane protein SecD [Escherichia coli E22] gi|192958018|gb|EDV88460.1| protein-export membrane protein SecD [Escherichia coli E110019] gi|194413104|gb|EDX29391.1| protein-export membrane protein SecD [Escherichia coli B171] gi|194419200|gb|EDX35283.1| protein-export membrane protein SecD [Shigella dysenteriae 1012] gi|194422224|gb|EDX38226.1| protein-export membrane protein SecD [Escherichia coli 101-1] gi|208727546|gb|EDZ77147.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4206] gi|208731657|gb|EDZ80345.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4045] gi|208737478|gb|EDZ85162.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4042] gi|209162298|gb|ACI39731.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC4115] gi|209744146|gb|ACI70380.1| protein-export membrane protein SecD [Escherichia coli] gi|209744148|gb|ACI70381.1| protein-export membrane protein SecD [Escherichia coli] gi|209744150|gb|ACI70382.1| protein-export membrane protein SecD [Escherichia coli] gi|209744152|gb|ACI70383.1| protein-export membrane protein SecD [Escherichia coli] gi|209910879|dbj|BAG75953.1| preprotein translocase SecD [Escherichia coli SE11] gi|217322663|gb|EEC31087.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. TW14588] gi|218350601|emb|CAU96291.1| SecYEG protein translocase auxillary subunit [Escherichia coli 55989] gi|218359739|emb|CAQ97280.1| SecYEG protein translocase auxillary subunit [Escherichia coli IAI1] gi|218368673|emb|CAR16413.1| SecYEG protein translocase auxillary subunit [Escherichia coli IAI39] gi|218425835|emb|CAR06641.1| SecYEG protein translocase auxillary subunit [Escherichia coli ED1a] gi|218430787|emb|CAR11661.1| SecYEG protein translocase auxillary subunit [Escherichia coli UMN026] gi|238863514|gb|ACR65512.1| SecYEG protein translocase auxillary subunit [Escherichia coli BW2952] gi|242376186|emb|CAQ30877.1| secD, subunit of SecD-SecF-YajC-YidC Secretion Complex and Sec Protein Secretion Complex [Escherichia coli BL21(DE3)] gi|253972375|gb|ACT38046.1| protein export protein SecD [Escherichia coli B str. REL606] gi|253976585|gb|ACT42255.1| protein export protein SecD [Escherichia coli BL21(DE3)] gi|254590989|gb|ACT70350.1| SecYEG protein translocase auxillary subunit [Escherichia coli O157:H7 str. TW14359] gi|257752277|dbj|BAI23779.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli O26:H11 str. 11368] gi|257757753|dbj|BAI29250.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli O103:H2 str. 12009] gi|257762922|dbj|BAI34417.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli O111:H- str. 11128] gi|281599740|gb|ADA72724.1| Protein-export membrane protein secD [Shigella flexneri 2002017] gi|284920215|emb|CBG33274.1| protein-export protein [Escherichia coli 042] gi|290761185|gb|ADD55146.1| Protein-export membrane protein secD [Escherichia coli O55:H7 str. CB9615] gi|291429380|gb|EFF02400.1| secD [Escherichia coli FVEC1412] gi|298280252|gb|EFI21756.1| protein-export membrane protein secD [Escherichia coli FVEC1302] gi|309700670|emb|CBI99966.1| protein-export protein [Escherichia coli ETEC H10407] gi|323938593|gb|EGB34842.1| protein-export membrane protein SecD [Escherichia coli E1520] gi|323943214|gb|EGB39370.1| protein-export membrane protein SecD [Escherichia coli E482] gi|323945309|gb|EGB41365.1| protein-export membrane protein SecD [Escherichia coli H120] gi|323963394|gb|EGB58956.1| protein-export membrane protein SecD [Escherichia coli H489] gi|323965360|gb|EGB60818.1| protein-export membrane protein SecD [Escherichia coli M863] gi|323976111|gb|EGB71204.1| protein-export membrane protein SecD [Escherichia coli TW10509] gi|324116892|gb|EGC10805.1| protein-export membrane protein SecD [Escherichia coli E1167] gi|331037722|gb|EGI09942.1| protein-export membrane protein SecD [Escherichia coli H736] gi|331051082|gb|EGI23134.1| protein-export membrane protein SecD [Escherichia coli M718] gi|331060205|gb|EGI32169.1| protein-export membrane protein SecD [Escherichia coli TA143] gi|331065981|gb|EGI37865.1| protein-export membrane protein SecD [Escherichia coli TA271] gi|332103906|gb|EGJ07252.1| SecYEG protein translocase auxillary subunit [Shigella sp. D9] Length = 615 Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + + ++++ I +K F L A + LI ++ +G +L Sbjct: 440 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612 >gi|312876083|ref|ZP_07736071.1| protein-export membrane protein SecF [Caldicellulosiruptor lactoaceticus 6A] gi|311797069|gb|EFR13410.1| protein-export membrane protein SecF [Caldicellulosiruptor lactoaceticus 6A] Length = 310 Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 147/303 (48%), Gaps = 9/303 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R + +SIL + + F G NY IDF GG L + ++ + Sbjct: 1 MTKIDFMGKRKYFYIVSILVMVIGLISYFVQGFNYDIDFTGGTVLEINLHKVPTAQEISE 60 Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI------TEIVPL 648 L G + E + + +T + + + K+ + Sbjct: 61 LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKKKTELSKETRDKLFGEIAKKYNLKK 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + + + VG +S EL + I V+I++I MLIYI IRF++ F A+ LI D+ L Sbjct: 121 EDLISYQNVGAVVSSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + +F I N T +AA+LT++GYS+ND +VV+DR+R+N ++ + +DL++ S+N+T Sbjct: 181 TVYTIFRIPLNSTFIAAILTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +GRS+ T+M+ I ++ + G I FA P+ G++ SSIFIA + Sbjct: 240 IGRSIATAMSVIIVLVVLYFMGVQSIKEFAFPLLIGVISGTYSSIFIATALWFDWELSTR 299 Query: 829 KNA 831 K Sbjct: 300 KKK 302 >gi|294669309|ref|ZP_06734388.1| protein-export membrane protein SecF [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308719|gb|EFE49962.1| protein-export membrane protein SecF [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 343 Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 167/304 (54%), Gaps = 3/304 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM+ IS+ I ++ L T GLNY ++F GG + V + + Sbjct: 1 MELFRFKRDIPFMKYGKLTTFISLATFILAVFFLATKGLNYSVEFTGGTVMEVEYAQAAE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR +L SLQ+G+I Q K+ ++RL + G + AQ + + + + Sbjct: 61 VDKVRDSLNSLQLGEIQVQALGTNKHLMIRLPNKAGTTSAQ--LSNQTMDILKKQDASAK 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + + + ++IY+ +RF+W FA+ AI + D+ LG Sbjct: 119 LRQVEFIGPQVGDELVHNGLIALGMVVVGIIIYLSMRFEWRFAVSAIIANMHDVIIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769 FALF EF+LT +A VL ++GYSVN+ VVV+DR+R+N + + + ++ID +I T+ Sbjct: 179 FALFQWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENFRKGAMRNHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R+V T + V+ M ++GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTVITHGSTEAMVVSMLLFGGAALHGFSMALTIGIVFGVYSSVLVASPLLLLFGLSREN 298 Query: 830 NARI 833 R+ Sbjct: 299 IGRV 302 >gi|77359289|ref|YP_338864.1| preprotein translocase subunit SecF [Pseudoalteromonas haloplanktis TAC125] gi|76874200|emb|CAI85421.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Pseudoalteromonas haloplanktis TAC125] Length = 315 Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 97/291 (33%), Positives = 165/291 (56%), Gaps = 2/291 (0%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 ++FM R +G S L + + +FT GLN+G+DF GG + V ++P DL VR+ Sbjct: 9 KTLRFMSLRKVAMGFSTLLILAAFISVFTKGLNFGLDFTGGTAVEVGFSQPADLKKVRNV 68 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L D S Q F + LVRL + D A+ + V + ++ E V Sbjct: 69 LAENGFADASVQLFGSSQEILVRLAPRGDDVKAEV-IGNQVIAALKLADESVVMRRIEFV 127 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + +L +G + ++ + I +LIY+ RF+W FA+GA++ LI D+ T+G F++ G+E Sbjct: 128 GPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVSGLIHDVIITVGLFSVLGLE 187 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AA+L +IGYS+ND +VV DR+R+N + ++ID S+ +TL R++ TS+ Sbjct: 188 FDLTILAAILAVIGYSLNDTIVVSDRIRENFRK-VRIDDTIEIIDISLTQTLNRTLVTSI 246 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + +WGG I FA + FG+ + SSI++A+ + + + + Sbjct: 247 TTILVLIALFIWGGQTIHGFATALLFGVFIGTYSSIYVASSVAIALGVSKE 297 >gi|311280704|ref|YP_003942935.1| protein-export membrane protein SecD [Enterobacter cloacae SCF1] gi|308749899|gb|ADO49651.1| protein-export membrane protein SecD [Enterobacter cloacae SCF1] Length = 604 Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 165/524 (31%), Positives = 290/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D ++ D +T + ++ + ++ Sbjct: 153 PYTTVRKEDNFGLSITFRDGAARDQAIDYLTARHR-----------DLVISSQGSNQLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMTDTRLKEAREYAVQQNINILRNRVNQLGVAEPVVQRQGAERIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKDTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDAKGRAILVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL+ V+FMI+ Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLLASVIFMILFYKKFGLIATSALIANLVLIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+N+T LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 81/177 (45%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + +A +I++ + +K F L A + LI ++ +G +L Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLLASVIFMILFYK-KFGLIATSALIANLVLIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + N Sbjct: 545 ANVTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|294635295|ref|ZP_06713794.1| protein-export membrane protein SecF [Edwardsiella tarda ATCC 23685] gi|291091329|gb|EFE23890.1| protein-export membrane protein SecF [Edwardsiella tarda ATCC 23685] Length = 322 Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 165/297 (55%), Gaps = 2/297 (0%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L I FMR + IS L + S +++ G N+G+DF GG + + + DL Sbjct: 9 QLNHGRKVIDFMRWDYVAFTISGLLLLASCLVMYVKGFNWGLDFTGGTVIELTVEKAPDL 68 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + +R+ L + QNF ++ ++R+ G+ Q +V I +++ Sbjct: 69 NAMRAALVKSGFEEPVVQNFGSSRDIMIRMAPISGN-EGQELGNRVVAVVKQVIDGDASV 127 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + E VGP + +L + G + ++++ I++LIY+ RF+W ALGA+ L D+ TLG Sbjct: 128 KRIEFVGPSVGSDLAQAGGMALLVALISILIYVGFRFEWRLALGAVLALAHDVVITLGVL 187 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ +TL R Sbjct: 188 SLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIVNVSLTQTLSR 246 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 247 TIMTSATTLVVVLCLYIFGGAMLKGFSLTMLIGVSIGTISSIYVASALALKLGMKRE 303 >gi|149908737|ref|ZP_01897398.1| protein export protein SecD [Moritella sp. PE36] gi|149808279|gb|EDM68218.1| protein export protein SecD [Moritella sp. PE36] Length = 614 Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 160/519 (30%), Positives = 280/519 (53%), Gaps = 31/519 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H +LEVD + + + R+ L++E + Sbjct: 104 NLAPATPDWLQSLGAGPLKLGLDLRGGVHFLLEVDMQEALVKAQDQMLQDFRTDLREEKL 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R+ N +T F D+ ++ + Q + L D + N ++ Sbjct: 164 RYTAIRKNSNGVTARFRDAETRDAAIKLIETKYQDL---LLTDSENNGQF-----SLTAK 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S++ + ++ +A++Q++ IIR R++Q+G++E +QR G+ RI+++LPG QD + +++L Sbjct: 216 MSEDKLAEIKEYALQQNITIIRNRVNQLGVAEPLVQRQGADRIVVELPGVQDTAGAKEIL 275 Query: 207 GTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 G TA + F V + G + DG +++ +V ++G H+ GAT++ D Sbjct: 276 GATATLEFRLVDNKADPYSSRVPAGSQKYTTRDGRPVVLKKQVILTGNHITGATSSLDEF 335 Query: 265 THKPVVDISFDEMGARR-----------------FFEVTRDNIGKPLAVVLDGRVLTAPV 307 + V + G++ ++ T + + + + Sbjct: 336 SRAQVNIDLDSQGGSKMSRATKKAIGTSMATVFIEYKPTGEKTADGKSKLQKIEEVINVA 395 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 QA +I+G + A LA +LRAG+L + IVEER +G LG +I G A Sbjct: 396 TIQAQLGRSFRITGLDSSSEAKNLALLLRAGALVAPVQIVEERTIGPSLGKQNIENGLSA 455 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGL 426 ++ G++ IV+FM + Y K+GLVA+ ++ N+I+ + ++S++ AT+TLP IAGIVL IG+ Sbjct: 456 MIYGMIAIVIFMAIYYRKFGLVANVALSANIIMIIGIMSMIPGATMTLPGIAGIVLTIGM 515 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 AVD+N+L+ ERIREE R +S+ ++ G+ A STI D+NIT L+ ++LF G GA++ Sbjct: 516 AVDANVLIFERIREELRDGRSIQQAIHCGYDNALSTIADANITTLLTAIILFAVGTGAIK 575 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GFAIT+ + I SMFT+I RA++ F+ KK+ + I Sbjct: 576 GFAITLAIGIAASMFTSIIGTRAIVNFLWGNKKIDKLSI 614 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 93/215 (43%), Gaps = 5/215 (2%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 + L R G + + + +V I +GP + ++ I G+ +I Sbjct: 398 QAQLGRSFRITGLDSSSEAKNLALLLRAGALVAPVQIVEERTIGPSLGKQNIENGLSAMI 457 Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYS 733 IA++I++ I ++ F L A L +I +G ++ G L +A ++ IG + Sbjct: 458 YGMIAIVIFMAIYYR-KFGLVANVALSANIIMIIGIMSMIPGATMTLPGIAGIVLTIGMA 516 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 V+ V++++R+R+ ++ S + I + L ++ ++ + + G Sbjct: 517 VDANVLIFERIREELRD---GRSIQQAIHCGYDNALSTIADANITTLLTAIILFAVGTGA 573 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 I FAI +A GI + +SI I+ F++ + Sbjct: 574 IKGFAITLAIGIAASMFTSIIGTRAIVNFLWGNKK 608 Score = 42.8 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 26/120 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ I LL A PN + + + Sbjct: 4 KYPLWKYLMVIATIAICLLYATPNLYGEDPA-----------------------VQVSAA 40 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + D++++ L K+ I S+ N++ + DS + ++ + L Sbjct: 41 RGAVIE---VSTLDKVKAQLDKQEISYKSVSLENNQVLVRLTDSEQQLLASEILKEQLGQ 97 >gi|254786636|ref|YP_003074065.1| protein-export membrane protein SecD [Teredinibacter turnerae T7901] gi|237686735|gb|ACR13999.1| protein-export membrane protein SecD [Teredinibacter turnerae T7901] Length = 621 Score = 213 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 149/526 (28%), Positives = 264/526 (50%), Gaps = 38/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD + + ++L ++ E I Sbjct: 104 NLAPTTPDWLLEMGAGPMKLGLDLAGGVHFLLEVDTPKVLAAEYKSIQEQLEKQIRSERI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + N++T+ + L + + + + + Sbjct: 164 YGARVTLRDNQLTVVADSDAD--------RMKLTEFMRSDVPELQYERAEESGKFIVRAR 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS + + +A+ Q++ +R R+++IG++E +QR G +RI+++LPG QD +R + ++ Sbjct: 216 LSDAYVREKEDYAVTQNLTTLRNRVNEIGVAEPLVQRQGRNRIVVELPGIQDTARAKSII 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY---LVEDKVEISGIHLNGATANFDP 263 G TA + F ++ + ++ ++ VE + I+G + A FD Sbjct: 276 GKTANLEFRLEANESTLSSQKESYPWRDEASQRRFGDNTVEKRAVITGERVTNAQVGFDQ 335 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP----------------- 306 T +P V+I+ D G TR N+G+ +AV+ + Sbjct: 336 DTSQPQVNITLDGQGGAAINRATRHNVGRRMAVLFIEYKTKSTKYKDENGEEQTRYEQVP 395 Query: 307 -------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ +I+G + A LA +LRAG+L + VEER +G LG++ Sbjct: 396 EAGIISFPTVQSALGRNFRITGLDNPQEASELALLLRAGALAAPMGFVEERTIGPSLGAE 455 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I G ++ GL L+++FM+ Y +GL A+ ++ N++L +A++S+ GATLTLP IAG Sbjct: 456 NIGLGIKSVQIGLGLVLVFMLFYYRVFGLAANIALGTNLVLLVAVMSIFGATLTLPGIAG 515 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE R ++ GF RA+ TI D+N+T I ++L+ Sbjct: 516 IVLTVGMAVDANVLIFSRIREELRDGMPAQSAIKAGFERAFETILDANLTTFIVAIILYA 575 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G+V+GFA+T+ + I+ SMFTA+ + RA++ I +K+ + I Sbjct: 576 IGSGSVKGFAVTLAIGIVTSMFTAVMVTRAIINLIYGGRKINKLWI 621 Score = 159 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 93/241 (38%), Gaps = 4/241 (1%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 Q+ + +F ++ L R G Q + + + Sbjct: 382 DENGEEQTRYEQVPEAGIISFPTVQSALGRNFRITGLDNPQEASELALLLRAGALAAPMG 441 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +GP + E I GI V I +L+++ ++ F L A L ++ + Sbjct: 442 FVEERTIGPSLGAENIGLGIKSVQIGLGLVLVFMLFYYRV-FGLAANIALGTNLVLLVAV 500 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 ++FG L +A ++ +G +V+ V+++ R+R+ ++ + + I Sbjct: 501 MSIFGATLTLPGIAGIVLTVGMAVDANVLIFSRIREELRD---GMPAQSAIKAGFERAFE 557 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + ++ FI + + G + FA+ +A GIV + +++ + I+ IY R N Sbjct: 558 TILDANLTTFIVAIILYAIGSGSVKGFAVTLAIGIVTSMFTAVMVTRAIINLIYGGRKIN 617 Query: 831 A 831 Sbjct: 618 K 618 Score = 44.7 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L +I +G + ALPN + GS L++D Sbjct: 3 RYPLWKYLLILVILGVGFIYALPNIYAPDPAVQI----------------SGSSASLKID 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 Q D+ + L K I F + + + ++ L Sbjct: 47 ---------QKAMDKAVAVLDKGNIAYFGVEHDDLNGLIRLRQQSDQLKAQREIQEAL 95 >gi|326319352|ref|YP_004237024.1| protein-export membrane protein SecF [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376188|gb|ADX48457.1| protein-export membrane protein SecF [Acidovorax avenae subsp. avenae ATCC 19860] Length = 317 Score = 213 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS + ++ LFT GL+ ++F GG + V + D Sbjct: 1 MEFFRIKKDIPFMKHALVFNAISFITFALAVFFLFTRGLHLSVEFTGGTVMEVAYTQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 VR + L D+ QNF ++ ++RL Q G + AQ E V + E P T Sbjct: 61 TGKVREAVSRLGYSDVIVQNFGTSRDVMIRLPVQKGATSAQQS--EQVMGALKEQDPGVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL+ G++ + + + +++Y+ RF+W F + AI + D+ LGF Sbjct: 119 LRRTEFVGPQVGEELVHGGLMALAMVVVGIVVYLAFRFEWKFGVAAIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +A VL ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I T+ Sbjct: 179 FAFFQWEFSLAVLAGVLAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M +GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|254194798|ref|ZP_04901228.1| protein-export membrane protein SecD [Burkholderia pseudomallei S13] gi|169651547|gb|EDS84240.1| protein-export membrane protein SecD [Burkholderia pseudomallei S13] Length = 673 Score = 213 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 164/514 (31%), Positives = 268/514 (52%), Gaps = 26/514 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGYQ 219 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ T + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 220 VVGT---------FTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 270 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 271 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 330 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 331 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 389 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 390 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 449 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 450 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 509 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 510 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 569 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 570 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 603 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 403 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 462 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 463 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 521 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 522 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 578 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 579 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 607 Score = 47.0 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + S K + LG D L Sbjct: 3 RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + + + + + I + D+ + + D + L Sbjct: 53 VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLNA 101 >gi|238897328|ref|YP_002923005.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465083|gb|ACQ66857.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 322 Score = 213 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 163/302 (53%), Gaps = 2/302 (0%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + L FMR GIS + ++ ++ G N+G+DF GG + + Sbjct: 4 NYTVEQLNYGRKVYNFMRWDNVAFGISFVLMAAAVLIISIRGFNWGLDFTGGTVIEITME 63 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 +P L +R L+ + QNF ++ ++R+ + ++ Q +++ Sbjct: 64 QPAPLDQIRDALKIAGLVGPVVQNFGTTRDLMIRMSAKH-NNAIQELGQKIITIIDQSTN 122 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 + ++ E VGP + EL + G + ++++ +++LIY+ +RF+W ALG + L D+ Sbjct: 123 QKTILKRVEFVGPSVGSELAQTGSMALLVALLSILIYVGLRFEWRLALGTVLALGHDVII 182 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 TLG +LF IE +LT +A+++++IGYS+ND +VV DR+R+N + S+ ++I+ S+ Sbjct: 183 TLGILSLFKIEIDLTILASLMSVIGYSLNDSIVVSDRIRENFRQIRRGTSY-EIINVSLT 241 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +TL R++ TS I V + ++GG+++ F++ M GI + SSI++A+ + L + Sbjct: 242 QTLSRTIMTSATTLIVVFMLYLFGGAMLHGFSLTMLIGISIGTLSSIYVASALALKLGMK 301 Query: 827 RA 828 R Sbjct: 302 RE 303 >gi|170025479|ref|YP_001721984.1| preprotein translocase subunit SecD [Yersinia pseudotuberculosis YPIII] gi|294504917|ref|YP_003568979.1| protein-export membrane protein SecD [Yersinia pestis Z176003] gi|169752013|gb|ACA69531.1| protein-export membrane protein SecD [Yersinia pseudotuberculosis YPIII] gi|262362982|gb|ACY59703.1| protein-export membrane protein SecD [Yersinia pestis D106004] gi|262366903|gb|ACY63460.1| protein-export membrane protein SecD [Yersinia pestis D182038] gi|294355376|gb|ADE65717.1| protein-export membrane protein SecD [Yersinia pestis Z176003] Length = 604 Score = 213 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 163/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P++L + + + LGLDLRGG H ++EVD D + + Sbjct: 89 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LR+ L+++ I ++R++ N + + F D + + + ++ + Sbjct: 140 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 188 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + + V+S + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 189 LVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 248 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 308 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 309 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKK 367 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 368 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 427 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM+V Y K+G++A ++ N++L + ++SLL Sbjct: 428 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 487 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+NI Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 547 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 429 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 545 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|152979888|ref|YP_001352044.1| preprotein translocase subunit SecF [Janthinobacterium sp. Marseille] gi|151279965|gb|ABR88375.1| preprotein translocase SecF subunit [Janthinobacterium sp. Marseille] Length = 314 Score = 213 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 156/299 (52%), Gaps = 3/299 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS L + ++ L GL+ I+F GG + V ++P D Sbjct: 1 MEFFRIKKDIPFMRHALIFNVISALTFVAAVFFLLHRGLHLSIEFTGGTVMEVTYSQPAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR L L D+ Q+F ++ L+RL Q AQ + E V + Sbjct: 61 IEGVRGKLTDLGYVDMQVQSFGTAQDVLIRLPVQKNADSAQ--ISERVIGALKAQDSTVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ EL G++ + + I ++IY+ RF+W +A+ AI + D+ LGF Sbjct: 119 LKRVEFVGPQVGDELTHDGLMALGMLVIGIVIYLAFRFEWKYAVSAILANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETL 769 FA F EF+LT +AAVL ++GYSVN+ VVV+DR+R+ + + ++++ +I +T+ Sbjct: 179 FAFFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVRETFRDRRFGKMPTEEVLNHAITQTI 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R+V T + + VL M +GG + FA+ + GI SS+F+AA + +++ R Sbjct: 239 SRTVITHGSTQLMVLSMLFFGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKRE 297 >gi|145589972|ref|YP_001156569.1| preprotein translocase subunit SecF [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048378|gb|ABP35005.1| protein translocase subunit secF [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 324 Score = 213 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 159/305 (52%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS + + ++ L+ +GL+ I+F GG + V + Sbjct: 1 MEFFRIKKDIPFMRHALVLNAISFITFLAAVFFLWHNGLHLSIEFTGGTVMEVSYPQTAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L +R+ +E L D QNF ++ ++RL Q + V + + Sbjct: 61 LESIRAKVEKLGYADTQIQNFGSSRDVMIRLPLQKDAEGKLISSADQSNAVMQVLDPTTS 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G+ +I I +++Y+ RF+W FAL I + D+ Sbjct: 121 GVKLQRVEFVGPQVGQELAIDGLKALIFVVIGIVLYLSFRFEWKFALAGIIANLHDVVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+N + Y ++ R++ID +I Sbjct: 181 LGFFAFFHWEFSLSVLAAVLAVLGYSVNESVVIFDRIRENFRKYRK-MNTREIIDNAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R+V T + + VL M ++GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTVITHGSTEMMVLAMLIFGGPTLFYFALALTIGILFGIYSSVFVAAALAMWLGVTR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|328675963|gb|AEB28638.1| Protein-export membrane protein SecF [Francisella cf. novicida 3523] Length = 314 Score = 213 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 85/300 (28%), Positives = 158/300 (52%), Gaps = 3/300 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I F+ + + S++ + S+ +FT GLN G+DF GG Q+ + + Sbjct: 1 MEFFKQKTDIDFLGIKKYTTVFSVIMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648 S + + + + G+ N + + + + + ++ Sbjct: 61 DSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVESSLN 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + +Q+ +GP++ +EL G++ +II+ + +LIYI RF+ F + A L+ D L Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIIAMVCILIYISARFEMKFGISACIALLHDPIVIL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N + + S +++++SIN+T Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNRSINDT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TS + VL + ++GGS + +F++ + GIVV SSI++A + + + R Sbjct: 240 LSRTILTSGLTMLVVLVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 299 >gi|312884252|ref|ZP_07743961.1| preprotein translocase subunit SecD [Vibrio caribbenthicus ATCC BAA-2122] gi|309368025|gb|EFP95568.1| preprotein translocase subunit SecD [Vibrio caribbenthicus ATCC BAA-2122] Length = 607 Score = 213 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 158/537 (29%), Positives = 281/537 (52%), Gaps = 43/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L A PN+L + LGLDLRGG H ++EVD D + + Sbjct: 89 IVALNLAPATPNWLDSIGAA---------PLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQ 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 + RS L++E I S+R+ + + + + + + ++ + + + + Sbjct: 140 EEAFRSELREEKIRYRSIRESGSDSVEVILRNEKQLADAMSLLSANHRDMTFSQSDAGGR 199 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 L + ++ + +V ++A+EQ++ I+R R++++G++E +QR G+ RI+++ Sbjct: 200 FL--------LRATFTEQRLAEVRNYAVEQNITILRNRVNELGVAEPLVQRQGAARIVVE 251 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F +V G D +G +++ +V Sbjct: 252 LPGVQDTARAKEILGATATLEFREVDSRADLSAAMNGRAPAGSEIKFDRNGRPVVLKKRV 311 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302 + G + ++ + +P V+I D G + ++ NIGK +A V Sbjct: 312 ILGGQSITD-ASSSADEYGRPQVNIDLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKR 370 Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + Q+ +I+G + A LA +LRAG+L ++IVEE Sbjct: 371 TPEGKVVLSKHEEVINQATIQSALGRSFRITGIDSAAEAHNLALLLRAGALIAPISIVEE 430 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G +G +I G A + G+V ++LF ++ Y K+G +A+ ++ N+IL + ++S++ Sbjct: 431 RTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRKFGFIANMALLANLILIVGVMSMIP 490 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R ++ ++ G++ A+STI D+NI Sbjct: 491 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADANI 550 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++LF G GA++GFA+T+ + IL SMFTAI R ++ I K++ + I Sbjct: 551 TTLITAIILFAIGTGAIKGFAVTLSIGILTSMFTAIIGTRCVVNLIYGGKRIDKLSI 607 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 89/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I +A Sbjct: 396 RSFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMLFTLLYYR-KFGFIANMALLANLILIVGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ + + I + ++ I+ + + G I FA Sbjct: 515 LIFERIREELRD---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAIGTGAIKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I ++ IY + Sbjct: 572 VTLSIGILTSMFTAIIGTRCVVNLIYGGKR 601 >gi|30249131|ref|NP_841201.1| preprotein translocase subunit SecF [Nitrosomonas europaea ATCC 19718] gi|30180450|emb|CAD85055.1| secF; protein-export membrane protein [Nitrosomonas europaea ATCC 19718] Length = 310 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 92/302 (30%), Positives = 159/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I F R + + S++ SI +I L T GLN +DF GG + + +P + Sbjct: 1 MDFFRFERDIPFTRWGKFSMTFSLIISILAIYSLTTKGLNLAVDFTGGTVMEISYQQPAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L R L + + D QNF ++ ++RL + A + E V + P Sbjct: 61 LDKTRKILAGIGMSDAIVQNFGTSRDVMIRLPVKL--EHAGGNLSETVMTALKVDDPSVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ EL+ G++ ++ ++ ++ Y+ +RF+W F + I + D+ LG Sbjct: 119 MKRVEFVGPQVGDELLENGLLAMLFVSMGIVAYLAVRFEWKFGVACIVANLHDVLTILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+ F EF+LT +AAVL ++GYSVN+ VV+ DR+R+N + + +ID +I ET+ Sbjct: 179 FSFFQWEFDLTVLAAVLAILGYSVNESVVISDRIRENFRKLRK-ATVTRIIDNAITETMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + V+ M ++GG + +FA+ + GI+ SSI IA+PILL + R Sbjct: 238 RTIITHGSTQMVVISMFLFGGEALHNFALALTIGILFGIYSSIMIASPILLLLGAKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|209520463|ref|ZP_03269223.1| protein-export membrane protein SecD [Burkholderia sp. H160] gi|209499108|gb|EDZ99203.1| protein-export membrane protein SecD [Burkholderia sp. H160] Length = 693 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 162/516 (31%), Positives = 269/516 (52%), Gaps = 22/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L A P ++ A+ + LGLDLRGG H +L+VD +N L Sbjct: 109 IVALNLQSASPTWMT---------ALRALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ + + ++ + ++ AD + + + + + Sbjct: 160 ASDVRTLLRDNNVRDGGVNRVNQSVVVNLADQATADAALKLLGRSVSELQW-----TSQP 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G++E IQ+ G+ RI+++L Sbjct: 215 NTGADGGVQLVGTFTPAVQRAVQDAALKQNITTLHNRVNELGVAEPVIQQQGADRIVVEL 274 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L+ +V Sbjct: 275 PGVQDTAKAKDIIGRTATLEARLADPVNTHPNPNDPVPPGDELFTQGNQAPVLLRKQVIF 334 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL R + Sbjct: 335 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRDNIGKPMAMVLFERGKGEVLTV 393 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 394 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMEIIEERTIGPSLGADNINKGFH 453 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 ++V G I +FMI Y +G+++ + +N++L +A+LS+L ATLTLP IA I L +G+ Sbjct: 454 SVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLVAVLSMLQATLTLPGIAAIALALGM 513 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+D+N+L+NER+REE R ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 514 AIDANVLINERVREELRHGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 573 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 GFAI + IL SMF+A+ R ++ F KK Sbjct: 574 GFAIVHCIGILTSMFSAVFFSRGLVNFWYGGKKKLK 609 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 85/209 (40%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I KG V+ A+ +++ Sbjct: 407 TGQPTPQAAADLALLLRAGSLAAPMEIIEERTIGPSLGADNINKGFHSVVWGFAAIAVFM 466 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + ++ L +AA+ +G +++ V++ +R+ Sbjct: 467 IAYY-MLFGVISMIGLSVNLLLLVAVLSMLQATLTLPGIAAIALALGMAIDANVLINERV 525 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + FAI G Sbjct: 526 REELR---HGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAIVHCIG 582 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ F Y + K + Sbjct: 583 ILTSMFSAVFFSRGLVNFWYGGKKKLKSL 611 Score = 40.4 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 40/152 (26%), Gaps = 25/152 (16%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + IGL+ LPN ++ ++V Sbjct: 3 RYPLWKYAVMLVALVIGLVYTLPNLYGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + L I ++ ++ + + +V LQ Sbjct: 38 SGKATVRLDATTLAAVEAALAGNQIKPTAVTFDNSQTNANIRVRLTDTDTQLRVKDLLQK 97 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153 + DP+ + + + + + + Sbjct: 98 SLNSDPNDPQYIVALNLQSASPTWMTALRALP 129 >gi|170726111|ref|YP_001760137.1| preprotein translocase subunit SecD [Shewanella woodyi ATCC 51908] gi|169811458|gb|ACA86042.1| protein-export membrane protein SecD [Shewanella woodyi ATCC 51908] Length = 616 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 160/522 (30%), Positives = 269/522 (51%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ + P + + + LGLDLRGG H ++EVD + + + + R+ L+ E I Sbjct: 104 NLAPKTPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMTEAKMSDFRTDLRGEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D + D + + + Sbjct: 164 RYAGIRNSAKGIEIKFRDEENLGRAERFLKTRGN--------DMVFRDISSGGNYLLLAN 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ + QV A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R + +L Sbjct: 216 LSEAYVKQVKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKDIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + +G Q ++ V ++G H+ GA +F Sbjct: 276 GATASIEFHMVDEKADAAAAASGRISPSSQVYNRRNGGQVVLHKAVMLTGDHIQGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 D + +P V I+ D G F VT+DNIGKP+A + + Sbjct: 336 DEYS-RPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGEKNPDGSIKMQKIEEV 394 Query: 322 NFTI-----------------ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 A LA +LRAG+L + IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVITGLEHAEAQSLALLLRAGALIAPVTIVEERTIGPSLGAENIQNG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+ ++++FM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 MQAMIWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFT+I R+++ I K++K + I Sbjct: 575 AVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKKLSI 616 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 91/234 (38%), Gaps = 6/234 (2%) Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 S+++ I + + + + ++ TI +G Sbjct: 384 GSIKMQKIEEVISVATIQARLGRNFVITGLEHAEAQSLALLLRAGALIAPVTIVEERTIG 443 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIE 717 P + E I+ G+ +I +LI++ + ++ F L A L ++ +G ++ G Sbjct: 444 PSLGAENIQNGMQAMIWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGVMSMIPGAV 502 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ S + I + ++ Sbjct: 503 LTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHEGYGNAFSTIADANI 559 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 F++ L + G + FA+ + GI + +SI I+ R K Sbjct: 560 TTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKK 613 >gi|170021220|ref|YP_001726174.1| preprotein translocase subunit SecD [Escherichia coli ATCC 8739] gi|195938529|ref|ZP_03083911.1| preprotein translocase subunit SecD [Escherichia coli O157:H7 str. EC4024] gi|253774607|ref|YP_003037438.1| preprotein translocase subunit SecD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|256020375|ref|ZP_05434240.1| preprotein translocase subunit SecD [Shigella sp. D9] gi|256023975|ref|ZP_05437840.1| preprotein translocase subunit SecD [Escherichia sp. 4_1_40B] gi|261223885|ref|ZP_05938166.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. FRIK2000] gi|261256401|ref|ZP_05948934.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str. FRIK966] gi|293408554|ref|ZP_06652393.1| conserved hypothetical protein [Escherichia coli B354] gi|293413662|ref|ZP_06656311.1| preprotein translocase SecD subunit [Escherichia coli B185] gi|293418475|ref|ZP_06660910.1| preprotein translocase SecD subunit [Escherichia coli B088] gi|297517229|ref|ZP_06935615.1| preprotein translocase subunit SecD [Escherichia coli OP50] gi|300818269|ref|ZP_07098480.1| protein-export membrane protein SecD [Escherichia coli MS 107-1] gi|300820354|ref|ZP_07100506.1| protein-export membrane protein SecD [Escherichia coli MS 119-7] gi|300900474|ref|ZP_07118641.1| protein-export membrane protein SecD [Escherichia coli MS 198-1] gi|300903328|ref|ZP_07121256.1| protein-export membrane protein SecD [Escherichia coli MS 84-1] gi|300918213|ref|ZP_07134819.1| protein-export membrane protein SecD [Escherichia coli MS 115-1] gi|300924127|ref|ZP_07140119.1| protein-export membrane protein SecD [Escherichia coli MS 182-1] gi|300930298|ref|ZP_07145711.1| protein-export membrane protein SecD [Escherichia coli MS 187-1] gi|300936395|ref|ZP_07151323.1| protein-export membrane protein SecD [Escherichia coli MS 21-1] gi|300947942|ref|ZP_07162089.1| protein-export membrane protein SecD [Escherichia coli MS 116-1] gi|300957971|ref|ZP_07170137.1| protein-export membrane protein SecD [Escherichia coli MS 175-1] gi|301025760|ref|ZP_07189274.1| protein-export membrane protein SecD [Escherichia coli MS 196-1] gi|301301555|ref|ZP_07207690.1| protein-export membrane protein SecD [Escherichia coli MS 124-1] gi|301330732|ref|ZP_07223334.1| protein-export membrane protein SecD [Escherichia coli MS 78-1] gi|301647328|ref|ZP_07247141.1| protein-export membrane protein SecD [Escherichia coli MS 146-1] gi|307137050|ref|ZP_07496406.1| preprotein translocase subunit SecD [Escherichia coli H736] gi|307312217|ref|ZP_07591853.1| protein-export membrane protein SecD [Escherichia coli W] gi|309786995|ref|ZP_07681607.1| protein-export membrane protein SecD [Shigella dysenteriae 1617] gi|309794868|ref|ZP_07689289.1| protein-export membrane protein SecD [Escherichia coli MS 145-7] gi|110613978|gb|ABF02645.1| SecD [Shigella flexneri 5 str. 8401] gi|169756148|gb|ACA78847.1| protein-export membrane protein SecD [Escherichia coli ATCC 8739] gi|253325651|gb|ACT30253.1| protein-export membrane protein SecD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260450405|gb|ACX40827.1| protein-export membrane protein SecD [Escherichia coli DH1] gi|291325003|gb|EFE64418.1| preprotein translocase SecD subunit [Escherichia coli B088] gi|291433720|gb|EFF06693.1| preprotein translocase SecD subunit [Escherichia coli B185] gi|291471732|gb|EFF14215.1| conserved hypothetical protein [Escherichia coli B354] gi|299879987|gb|EFI88198.1| protein-export membrane protein SecD [Escherichia coli MS 196-1] gi|300315345|gb|EFJ65129.1| protein-export membrane protein SecD [Escherichia coli MS 175-1] gi|300355955|gb|EFJ71825.1| protein-export membrane protein SecD [Escherichia coli MS 198-1] gi|300404623|gb|EFJ88161.1| protein-export membrane protein SecD [Escherichia coli MS 84-1] gi|300414598|gb|EFJ97908.1| protein-export membrane protein SecD [Escherichia coli MS 115-1] gi|300419580|gb|EFK02891.1| protein-export membrane protein SecD [Escherichia coli MS 182-1] gi|300452494|gb|EFK16114.1| protein-export membrane protein SecD [Escherichia coli MS 116-1] gi|300458501|gb|EFK21994.1| protein-export membrane protein SecD [Escherichia coli MS 21-1] gi|300461870|gb|EFK25363.1| protein-export membrane protein SecD [Escherichia coli MS 187-1] gi|300527139|gb|EFK48208.1| protein-export membrane protein SecD [Escherichia coli MS 119-7] gi|300529160|gb|EFK50222.1| protein-export membrane protein SecD [Escherichia coli MS 107-1] gi|300843052|gb|EFK70812.1| protein-export membrane protein SecD [Escherichia coli MS 124-1] gi|300843393|gb|EFK71153.1| protein-export membrane protein SecD [Escherichia coli MS 78-1] gi|301074524|gb|EFK89330.1| protein-export membrane protein SecD [Escherichia coli MS 146-1] gi|306907719|gb|EFN38221.1| protein-export membrane protein SecD [Escherichia coli W] gi|308121521|gb|EFO58783.1| protein-export membrane protein SecD [Escherichia coli MS 145-7] gi|308924573|gb|EFP70068.1| protein-export membrane protein SecD [Shigella dysenteriae 1617] gi|313646975|gb|EFS11432.1| protein-export membrane protein SecD [Shigella flexneri 2a str. 2457T] gi|315059685|gb|ADT74012.1| SecYEG protein translocase auxillary subunit [Escherichia coli W] gi|315135090|dbj|BAJ42249.1| conserved hypothetical protein [Escherichia coli DH1] gi|315256232|gb|EFU36200.1| protein-export membrane protein SecD [Escherichia coli MS 85-1] gi|315616652|gb|EFU97269.1| protein-export membrane protein SecD [Escherichia coli 3431] gi|320181610|gb|EFW56525.1| Protein-export membrane protein SecD [Shigella boydii ATCC 9905] gi|320186037|gb|EFW60782.1| Protein-export membrane protein SecD [Shigella flexneri CDC 796-83] gi|320192821|gb|EFW67461.1| Protein-export membrane protein SecD [Escherichia coli O157:H7 str. EC1212] gi|320201649|gb|EFW76225.1| Protein-export membrane protein SecD [Escherichia coli EC4100B] gi|320638397|gb|EFX08111.1| preprotein translocase subunit SecD [Escherichia coli O157:H7 str. G5101] gi|320656021|gb|EFX23937.1| preprotein translocase subunit SecD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661171|gb|EFX28602.1| preprotein translocase subunit SecD [Escherichia coli O55:H7 str. USDA 5905] gi|320665147|gb|EFX32240.1| preprotein translocase subunit SecD [Escherichia coli O157:H7 str. LSU-61] gi|323152124|gb|EFZ38417.1| protein-export membrane protein SecD [Escherichia coli EPECa14] gi|323160485|gb|EFZ46433.1| protein-export membrane protein SecD [Escherichia coli E128010] gi|323164199|gb|EFZ50006.1| protein-export membrane protein SecD [Shigella sonnei 53G] gi|323178329|gb|EFZ63907.1| protein-export membrane protein SecD [Escherichia coli 1180] gi|323184766|gb|EFZ70137.1| protein-export membrane protein SecD [Escherichia coli 1357] gi|323379749|gb|ADX52017.1| protein-export membrane protein SecD [Escherichia coli KO11] gi|324016686|gb|EGB85905.1| protein-export membrane protein SecD [Escherichia coli MS 117-3] gi|326341168|gb|EGD64960.1| Protein-export membrane protein SecD [Escherichia coli O157:H7 str. 1044] gi|326346056|gb|EGD69795.1| Protein-export membrane protein SecD [Escherichia coli O157:H7 str. 1125] gi|327254726|gb|EGE66342.1| protein-export membrane protein SecD [Escherichia coli STEC_7v] gi|332085753|gb|EGI90917.1| protein-export membrane protein SecD [Shigella dysenteriae 155-74] gi|332094558|gb|EGI99604.1| protein-export membrane protein SecD [Shigella boydii 5216-82] gi|332341771|gb|AEE55105.1| protein-export membrane protein SecD [Escherichia coli UMNK88] gi|332761773|gb|EGJ92052.1| protein-export membrane protein SecD [Shigella flexneri 2747-71] gi|332764285|gb|EGJ94521.1| protein-export membrane protein SecD [Shigella flexneri K-671] gi|332768513|gb|EGJ98696.1| protein-export membrane protein SecD [Shigella flexneri 2930-71] gi|333008061|gb|EGK27537.1| protein-export membrane protein SecD [Shigella flexneri K-218] gi|333008603|gb|EGK28071.1| protein-export membrane protein SecD [Shigella flexneri VA-6] gi|333022016|gb|EGK41261.1| protein-export membrane protein SecD [Shigella flexneri K-304] Length = 604 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + + ++++ I +K F L A + LI ++ +G +L Sbjct: 429 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601 >gi|254786635|ref|YP_003074064.1| protein-export membrane protein SecF [Teredinibacter turnerae T7901] gi|237686792|gb|ACR14056.1| protein-export membrane protein SecF [Teredinibacter turnerae T7901] Length = 308 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 154/284 (54%), Gaps = 4/284 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I FM R SI + SI L GL +G+DF GG + + + DL VR L Sbjct: 7 INFMGRRKLAAAFSIALVLISIGSLLVKGLAFGLDFTGGTLIELHYPQSADLGKVRDELG 66 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + + NF +++ ++R+Q D + + + ++ E VG Sbjct: 67 EMGYANAVVANFGSDEDVVIRIQS---DGEKIGDSVATQLIQAYGGEEPAQLKRIEYVGS 123 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 +I E G +G++ + ++ Y+ +RF++ F++GA+ L D+ LG F+LF ++F+ Sbjct: 124 QIGEEFANDGALGMLFALAVVMAYVALRFQFKFSVGAVVALAHDVLIVLGMFSLFQLDFD 183 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +A+VL +IGYS+ND +VV DR+R+N + + ++++ S+ +TL R++ TS Sbjct: 184 LTVLASVLAVIGYSLNDTIVVSDRIRENFRKIRKAEPI-EVVNISLTQTLDRTLITSGTT 242 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++ + ++GG +I +FA+ + GI + SSI++AA I+L + Sbjct: 243 MLVLVALFIFGGELIHNFALALLIGIGIGTYSSIYVAANIMLAM 286 >gi|238918975|ref|YP_002932489.1| preprotein translocase subunit SecF [Edwardsiella ictaluri 93-146] gi|238868543|gb|ACR68254.1| protein-export membrane protein SecF, putative [Edwardsiella ictaluri 93-146] Length = 322 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 167/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L I FMR + +S L + S +++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVIDFMRWDYVAFTLSGLLLLASCLVMYVKGFNWGLDFTGGTVIELTVEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 DL+ +R++L + QNF ++ ++R+ G+ Q +V I Sbjct: 65 APDLNAMRASLVKSGFDEPVVQNFGSSRDIMIRMAPISGN-EGQELGNRIVAVVEQVIDG 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + ++++ I++LIY+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALISILIYVGFRFEWRLALGAVLALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 LGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIVNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLVVVLCLYIFGGAMLKGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|261491626|ref|ZP_05988209.1| preprotein translocase subunit SecF [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312752|gb|EEY13872.1| preprotein translocase subunit SecF [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 324 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 160/293 (54%), Gaps = 4/293 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM+ R+ G S++ + I + T G N+G+DF GG + ++P DL+ +R Sbjct: 16 PYKLIPFMKYRYVGFIFSLIVTALCIFTIATKGFNWGLDFTGGTVIETQFSQPADLAKLR 75 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + LE+ G+ Q +K+ ++RL GD +V+ M+ +K+ P +TI++ E Sbjct: 76 TELENSGYGNALVQTTGSQKDLMIRLAASAGDMSVGNKVMAMIHQKL---DPNATIKSIE 132 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + +LIY+ RF+W A+G I L D+ T+G F+ Sbjct: 133 FVGPNVGEELTQGAIYATLATLAMLLIYVGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQ 192 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT VAA+L+++GYS+ND +VV+DR+R+N S S + +++TL R++ T Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKVRRSSSIEIIDIS-LSQTLSRTLMT 251 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S+ VL + GG + SF++ + GI SSI+IA + L + R Sbjct: 252 SVTTLFVVLALFYLGGPTLHSFSLALLIGIGFGTYSSIYIAIGVALQLGLKRE 304 >gi|22124900|ref|NP_668323.1| preprotein translocase subunit SecD [Yersinia pestis KIM 10] gi|270489480|ref|ZP_06206554.1| protein-export membrane protein SecD [Yersinia pestis KIM D27] gi|21957736|gb|AAM84574.1|AE013703_4 protein secretion, membrane protein [Yersinia pestis KIM 10] gi|270337984|gb|EFA48761.1| protein-export membrane protein SecD [Yersinia pestis KIM D27] Length = 615 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 164/537 (30%), Positives = 288/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P++L + + + LGLDLRGG H ++EVD D + + Sbjct: 100 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LR+ L+++ I ++R++ N + + F D + + + ++ + Sbjct: 151 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 199 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + + V+S + +V +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 200 LVFSSNGSNTLKAVMSDERLREVREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 319 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 320 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGATMSNFTKDNIGKPMATLFVEYKDSGKK 378 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 379 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 438 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM+V Y K+G++A ++ N++L + ++SLL Sbjct: 439 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 498 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+NI Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 558 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 559 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 615 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 440 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 556 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 612 Score = 40.4 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ +GLL ALPN + + Sbjct: 4 RYPLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 L D L + I S+ I F D + + + L Sbjct: 42 GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREALVEAL 95 >gi|26246413|ref|NP_752452.1| preprotein translocase subunit SecD [Escherichia coli CFT073] gi|91209476|ref|YP_539462.1| preprotein translocase subunit SecD [Escherichia coli UTI89] gi|110640669|ref|YP_668397.1| preprotein translocase subunit SecD [Escherichia coli 536] gi|117622669|ref|YP_851582.1| preprotein translocase subunit SecD [Escherichia coli APEC O1] gi|191173493|ref|ZP_03035020.1| protein-export membrane protein SecD [Escherichia coli F11] gi|218557317|ref|YP_002390230.1| preprotein translocase subunit SecD [Escherichia coli S88] gi|237707598|ref|ZP_04538079.1| protein-export membrane protein SecD [Escherichia sp. 3_2_53FAA] gi|331645581|ref|ZP_08346685.1| protein-export membrane protein SecD [Escherichia coli M605] gi|331656462|ref|ZP_08357424.1| protein-export membrane protein SecD [Escherichia coli TA206] gi|331681801|ref|ZP_08382434.1| protein-export membrane protein SecD [Escherichia coli H299] gi|26106811|gb|AAN78996.1|AE016756_179 Protein-export membrane protein secD [Escherichia coli CFT073] gi|91071050|gb|ABE05931.1| protein-export membrane protein SecD [Escherichia coli UTI89] gi|110342261|gb|ABG68498.1| protein-export membrane protein SecD [Escherichia coli 536] gi|115511793|gb|ABI99867.1| export membrane protein SecD [Escherichia coli APEC O1] gi|190906202|gb|EDV65814.1| protein-export membrane protein SecD [Escherichia coli F11] gi|218364086|emb|CAR01751.1| SecYEG protein translocase auxillary subunit [Escherichia coli S88] gi|222032203|emb|CAP74942.1| Protein-export membrane protein secD [Escherichia coli LF82] gi|226898808|gb|EEH85067.1| protein-export membrane protein SecD [Escherichia sp. 3_2_53FAA] gi|281177578|dbj|BAI53908.1| preprotein translocase SecD [Escherichia coli SE15] gi|294490248|gb|ADE89004.1| protein-export membrane protein SecD [Escherichia coli IHE3034] gi|307552313|gb|ADN45088.1| protein-export membrane protein SecD [Escherichia coli ABU 83972] gi|323952980|gb|EGB48848.1| protein-export membrane protein SecD [Escherichia coli H252] gi|323958601|gb|EGB54304.1| protein-export membrane protein SecD [Escherichia coli H263] gi|331045743|gb|EGI17869.1| protein-export membrane protein SecD [Escherichia coli M605] gi|331054710|gb|EGI26719.1| protein-export membrane protein SecD [Escherichia coli TA206] gi|331081003|gb|EGI52168.1| protein-export membrane protein SecD [Escherichia coli H299] Length = 615 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ + N ++ L G + + + Sbjct: 369 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGA 428 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + + ++++ I +K F L A + LI ++ Sbjct: 429 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANL 487 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 488 ILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDE 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I V+ + G I FAI G+ + ++I I+ + Sbjct: 545 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 604 Query: 824 YDWRAKNA 831 Y + Sbjct: 605 YGGKRVKK 612 >gi|312113470|ref|YP_004011066.1| protein-export membrane protein SecD [Rhodomicrobium vannielii ATCC 17100] gi|311218599|gb|ADP69967.1| protein-export membrane protein SecD [Rhodomicrobium vannielii ATCC 17100] Length = 548 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 191/543 (35%), Positives = 305/543 (56%), Gaps = 18/543 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + W + +I ++ ALPN +P S + PS R+ LGLDLRGG+HL+ ++ Sbjct: 6 LHFSRWGAVATILISVASVIFALPNVIPLSTYESLPSWAQLPRMPLGLDLRGGTHLLYQI 65 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D +LQ E R L + I + N++ ++ D + K+ Q Sbjct: 66 DTAQLKKDWLQSIQTESRRSLSEARIAHSGVVIAGNQVRVNLRDPANTDAALTKLKTLAQ 125 Query: 121 GVNSKLNVDPK-----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 +++ L + +T I++ +Q I + I +AI +S+E+IR+R+D G Sbjct: 126 PLSTSLLTSSGGDTGMDVAVQSTQPGVITLEPTQAGIQRRIENAISRSIEVIRRRVDPQG 185 Query: 176 ISESTIQRLGSHRILIQLPGEQD---PSRLRQLLGTTAKMSFHKVLP-------NNSKKG 225 +E+TIQ G ++ + P ++ +GTTAK++F V + Sbjct: 186 TTEATIQAQGGANGKDRILIQVPGLAPDEVKSRVGTTAKLTFQLVDSSMSAEDAKDHGVP 245 Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV---VDISFDEMGARRF 282 + ++ G LV +V +SG L A A +D + VD F+ GA F Sbjct: 246 PDSQLLPDQERPGQFVLVHKEVIVSGDDLVNAYAGYDSRAGGVGERAVDFEFNSRGAAAF 305 Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342 VTR+NIG+P A++LDG+V++APVI IP G+ QI+GNF +E LA +LR+G+LP Sbjct: 306 ARVTRENIGRPFAIILDGKVISAPVIRSEIPGGRGQITGNFGVEETNRLALLLRSGALPA 365 Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402 L+I+EER+VG LG+DSI G+ A G + LFMI YG +G+ + ++ +N+ + + Sbjct: 366 ALSIIEERSVGPSLGADSIDAGSIAAAVGFAAVSLFMISAYGLFGVFSVIALAVNIAIIM 425 Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462 A LSL ATLT+P IAGIVL +G+AVD+N+L+ ERIREE R + + +++ GF RAY+T Sbjct: 426 ACLSLFHATLTMPGIAGIVLTMGVAVDANVLIYERIREELRTGRGMISAIEAGFDRAYAT 485 Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 I DS++TAL+A ++L+ FG G V+GFA+T+ I+ S+FTAI++ R M+ +R + + Sbjct: 486 IIDSHLTALLAALILYAFGSGTVKGFAVTLSFGIVSSLFTAITLTRLMVSTWLRQTRPTA 545 Query: 523 IDI 525 + I Sbjct: 546 LHI 548 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 80/176 (45%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + + I G + + A+ +++ + F + ++ L ++I + +LF Sbjct: 374 SVGPSLGADSIDAGSIAAAVGFAAVSLFMISAYGL-FGVFSVIALAVNIAIIMACLSLFH 432 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G +V+ V++Y+R+R+ ++ T I+ + + + Sbjct: 433 ATLTMPGIAGIVLTMGVAVDANVLIYERIREELR---TGRGMISAIEAGFDRAYATIIDS 489 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + A ++ L + +G + FA+ ++FGIV + ++I + ++ A Sbjct: 490 HLTALLAALILYAFGSGTVKGFAVTLSFGIVSSLFTAITLTRLMVSTWLRQTRPTA 545 >gi|114320374|ref|YP_742057.1| preprotein translocase subunit SecD [Alkalilimnicola ehrlichii MLHE-1] gi|114226768|gb|ABI56567.1| protein-export membrane protein SecD [Alkalilimnicola ehrlichii MLHE-1] Length = 621 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 168/529 (31%), Positives = 284/529 (53%), Gaps = 39/529 (7%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 A P++ + A+ + LGLDLRGG H +LEVD + ++ + ++ R+ Sbjct: 98 YTAAMTLTPRTP--AWLRALGAEPMYLGLDLRGGVHFLLEVDVNALREQTVERHVNDFRT 155 Query: 80 FLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL-QGVNSKLNVDPKKNLLVT 137 L++ I + ++ + +SF ++ ++ + + D L+ Sbjct: 156 LLRQGRIRYGQVEPYEDLAVRVSFREAPARDEALRLLQEDFGDLEFDRDEADGNYYLIAR 215 Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197 T+ ++ D+++ ++ Q++ +R R+D++G++E IQR G+ RI++QLPG Q Sbjct: 216 ITQDDL---------DEIVQFSVNQNITTLRNRVDELGVAEPVIQRQGAERIVVQLPGVQ 266 Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEIS 250 DP+R +++LG TA + F V L + DGN +++ V ++ Sbjct: 267 DPARAKEILGATATLEFRLVDMERYPFTGDPEAPRLPPAAELFQERDGNYVVLQRDVMMT 326 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI-- 308 G + A + D +T P V+I R+F +TR+++G +AVV R ++ Sbjct: 327 GDRIVHAASGIDQETGGPQVNIRLSGAAGRQFNRITREHVGDLMAVVFIERQSEMVLVND 386 Query: 309 -----------------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + +I+G + + A LA +LRAG+L ++IVEER Sbjct: 387 EPQREVTEVREVISVANIREPLGASFRITGLDSTQEARNLALLLRAGALAAPIDIVEERT 446 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 +G LG++++ +G A+V G L+V+FM Y +GLVA+ ++ N++L +A+LSLL AT Sbjct: 447 IGPSLGAENVRQGFLAVVIGFALVVVFMAFYYRVFGLVANLALITNLVLIVAVLSLLQAT 506 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAGIVL +G+AVD+N+L+ +RIREE S+ ++D G+ +A STI D+N+T L Sbjct: 507 LTLPGIAGIVLTVGMAVDANVLIFQRIREELHAGSSIQRAIDQGYGKALSTIADANVTTL 566 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 IA VVLF FG G V+GFA+T+ + ++ SMFTAI RA++ I K Sbjct: 567 IAAVVLFVFGTGPVQGFAVTLSIGLVTSMFTAILGTRAVINLIYGGNKR 615 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 90/206 (43%), Gaps = 4/206 (1%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 Q + + + I +GP + E +R+G + V+I +++++ Sbjct: 418 DSTQEARNLALLLRAGALAAPIDIVEERTIGPSLGAENVRQGFLAVVIGFALVVVFMAFY 477 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F L A LI ++ + +L L +A ++ +G +V+ V+++ R+R+ Sbjct: 478 YRV-FGLVANLALITNLVLIVAVLSLLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREE 536 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + S + ID+ + L ++ I+ + + V+G + FA+ ++ G+V Sbjct: 537 LHA---GSSIQRAIDQGYGKALSTIADANVTTLIAAVVLFVFGTGPVQGFAVTLSIGLVT 593 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + ++I ++ IY + A + Sbjct: 594 SMFTAILGTRAVINLIYGGNKRVAEL 619 Score = 41.6 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 48/372 (12%), Positives = 98/372 (26%), Gaps = 34/372 (9%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + +G L ALPN + + E D Sbjct: 3 RYPLWKYLILIVAISLGALYALPNLFGEDPTLQIS--------------------TAEGD 42 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 D Q L FL+++G+ + + + F + + AD V+ L + Sbjct: 43 PPD------QETQQSLLRFLEEQGVPAIGAETREGQYLIRFDSVDHQMDAADLVSAKLGR 96 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 G + + + P+ + E + + +E+ + + + Sbjct: 97 GYTAAMTLTPRTPAWLRALGAEPMYLGLDL------RGGVHFLLEVDVNALREQTVERHV 150 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 R G+ +P + + + ++ F ++DGN Sbjct: 151 NDFRTLLRQGRIRYGQVEPYEDLAVRVSFREAPARDEALRLLQEDFGDLEFDRDEADGNY 210 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 YL+ + + + N + T + VD + R + P Sbjct: 211 YLIARITQDDLDEIVQFSVNQNITTLRNRVDELGVAEPVIQRQGAERIVVQLPGVQDPAR 270 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIE-TAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 FT + A L +V +R+V Sbjct: 271 AKEILGATATLEFRLVDMERYPFTGDPEAPRLPPAAELFQERDGNYVVLQRDVMMTGDRI 330 Query: 360 SIYKGTCAIVAG 371 G Sbjct: 331 VHAASGIDQETG 342 >gi|294669308|ref|ZP_06734387.1| protein-export membrane protein SecD [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308718|gb|EFE49961.1| protein-export membrane protein SecD [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 615 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 168/506 (33%), Positives = 274/506 (54%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 + + P M N + LGLDLRGG H ++VD + Y+ ++R L++E I Sbjct: 104 NQIANTPEWMAKIRANPMFLGLDLRGGVHFTMQVDMKAAMQKTFDRYAGDIRRELRREKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 V ++ Q N + + F D I + +T+ + + Sbjct: 164 RVGTIVQNDNSLAVPFQDEADLNKILPTLKNMFPEA------------TLTSDGSRLILT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ +D + A+ Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEQAVDNIRKQAVAQNINTLHNRVNELGVAEPIIQQAGVDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF--------LRDSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + + + L+ +VE++G ++ A Sbjct: 272 GRTATLEVRMVSDDTNALQAALDGNVPEGYELLNTSGDMPHPLLISKQVELTGEDIDDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 + + K +P V +SF+ GA F ++TR+N+GK +A+VL + V+TAP IN+ IP+ Sbjct: 332 PDRNEKG-QPGVSVSFNNSGAAIFADLTRNNVGKRMAMVLIDQGKAEVVTAPQINEPIPN 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 GK ISG+ + A ++ +LRAGSL + IVEER +GA LG+++I KG + + G Sbjct: 391 GKTIISGSMSFAEAEDISLLLRAGSLAAPMEIVEERTIGASLGAENIKKGVDSTLWGFAA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + LFM+V Y G+ + ++ N++L +A LS LGATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VALFMVVYYRLMGVFSVIALVANILLLVAALSFLGATLTLPGIAAMALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++ G+ A+ TI DSNIT+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRDGAKPQAAIFEGYKHAWDTIVDSNITSLIAGIALLLFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SMF+++ + R + K+ Sbjct: 571 GILTSMFSSVVVSRMFVNLWYGRKRK 596 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 85/208 (40%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +G + E I+KG+ + A+ Sbjct: 393 TIISGSMSFAEAEDISLLLRAGSLAAPMEIVEERTIGASLGAENIKKGVDSTLWGFAAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + ++ + ++ L+ +I + + G L +AA+ +G +++ V++ Sbjct: 453 LFMVVYYRL-MGVFSVIALVANILLLVAALSFLGATLTLPGIAAMALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + I + V +++ + I+ + + ++G + FA+ Sbjct: 512 ERIREELRDGAK---PQAAIFEGYKHAWDTIVDSNITSLIAGIALLLFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ ++ + Y + K Sbjct: 569 CLGILTSMFSSVVVSRMFVNLWYGRKRK 596 >gi|315616651|gb|EFU97268.1| protein-export membrane protein SecF [Escherichia coli 3431] gi|323164200|gb|EFZ50007.1| protein-export membrane protein SecF [Shigella sonnei 53G] gi|323170491|gb|EFZ56141.1| protein-export membrane protein SecF [Escherichia coli LT-68] gi|323178328|gb|EFZ63906.1| protein-export membrane protein SecF [Escherichia coli 1180] Length = 304 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 85/286 (29%), Positives = 161/286 (56%), Gaps = 1/286 (0%) Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 MR +W GIS L I +I ++ G N+G+DF GG + + +P ++ V+R L+ Sbjct: 1 MRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAG 60 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 + QNF + +VR+ G++ Q +++K + ++ E VGP + Sbjct: 61 FEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVG 120 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 +L + G + ++ + +++L+Y+ RF+W A G + L D+ TLG +LF IE +LT Sbjct: 121 ADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTI 180 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ +TL R++ TS + Sbjct: 181 VASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSGTTLMV 239 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 240 ILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 285 >gi|86145578|ref|ZP_01063908.1| protein export protein SecD [Vibrio sp. MED222] gi|218708623|ref|YP_002416244.1| preprotein translocase subunit SecD [Vibrio splendidus LGP32] gi|85836549|gb|EAQ54675.1| protein export protein SecD [Vibrio sp. MED222] gi|218321642|emb|CAV17594.1| Protein-export membrane protein SecD [Vibrio splendidus LGP32] Length = 618 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 154/524 (29%), Positives = 275/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L++E I Sbjct: 104 NLAASTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMQKLVGQQEEAFRSELREEKI 163 Query: 87 GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + + + Q D + + Sbjct: 164 RYRAIRPSGKDAVEVILRNEEQLAEAKSLLQSKHQ--------DMTFVDSESNGRFSLIA 215 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 216 NFTETRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275 Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V + G +D DG +++ +V + G + ++ Sbjct: 276 LGATATLEFREVDSSADLAAAASGRAPAGSEIKQDRDGRPVVLKKRVILGGSSITD-ASS 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + +R NIGK +A V Sbjct: 335 SVDEYGRPQVNISLDSEGGSKMSTFSRQNIGKLMATVFAEYKDSGRKTPEGRVILSKHEE 394 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 VINQATIQSALGRNFRITGIDSTAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A+V G+ ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 455 MGIMAMVWGMAAVMLFTLLYYRTFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 514 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT L+ ++LF G Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLLTAIILFAVG 574 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++K + I Sbjct: 575 TGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRVKKLSI 618 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 90/213 (42%), Gaps = 5/213 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G + + ++ +I +GP + ++ I GI+ ++ A Sbjct: 407 RNFRITGIDSTAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIMAMVWGMAA 466 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 467 VMLFTLLYYR-TFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ ++ + + G I FA Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLLTAIILFAVGTGAIKGFA 582 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ GI+ + ++I I+ +Y + Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLMYGGKRVKK 615 >gi|253999939|ref|YP_003052002.1| protein-export membrane protein SecD [Methylovorus sp. SIP3-4] gi|253986618|gb|ACT51475.1| protein-export membrane protein SecD [Methylovorus sp. SIP3-4] Length = 609 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 166/509 (32%), Positives = 281/509 (55%), Gaps = 24/509 (4%) Query: 30 SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ R PS + + LGLDLRGG H +L+VD ++ + Y + RS L+KE + Sbjct: 104 NLISRSPSWLRSIGALPMYLGLDLRGGVHFLLQVDMKAALDKAAERYVGDFRSALRKERV 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + + + F+ + + D L + +K + Sbjct: 164 AYMGVSREGQAVQVRFSSAAELAKAQKILNKEY--------PDLTFRTLDSGNDKLLIAT 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+ ++ A++Q+++ + R++++G++E IQ+ G RI+IQLPG QD ++ +++L Sbjct: 216 LNLQAQKRIQEFALKQNIQTLHNRVNELGVAEPIIQQQGLDRIVIQLPGVQDTAKAKEIL 275 Query: 207 GTTAKMSFHKVL---------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257 G TA + V SK FG + + +G LV+ V ++G ++ A Sbjct: 276 GRTATLEIRMVDEEKSDMTTLDKASKGQVPFGDEYYVERNGQPILVKKNVVLTGDYITDA 335 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIP 313 D + + VV ++ D GAR F + T++N+GK + V+TAPVI + I Sbjct: 336 GPGLDQQNGESVVHVTLDGRGARIFKQATKENVGKRMAILLIEKGQAEVITAPVIREEIG 395 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 G+ QISG ++ A ++ +LRAG+L ++I+EER VG +G ++I +G + + G Sbjct: 396 GGRVQISGMANVQEATDVSLLLRAGALAAPMDIIEERTVGPSMGEENIKRGWHSTLWGFA 455 Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433 I +FMI+ Y +G V+ ++ +N++L A+LSLL ATLTLP +A I L +G+A+D+N+L Sbjct: 456 AIAVFMIIYYMLFGSVSVLALGVNLLLLTAVLSLLQATLTLPGLAAIALTLGMAIDANVL 515 Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493 +NERIREE R + ++ G+ RA+ TI DSN+T +IA + LF FG G V+GFA+ Sbjct: 516 INERIREELRNGNTPQAAIHAGYDRAFDTILDSNVTTMIAGLALFMFGSGPVKGFAVVHV 575 Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKS 522 L IL SMF+A+ + RA++ I Y++ S Sbjct: 576 LGILTSMFSAVVVSRALVNLIYGYRRKIS 604 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 89/205 (43%), Gaps = 4/205 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 Q + + + I VGP + E I++G + A+ +++ I + Sbjct: 406 NVQEATDVSLLLRAGALAAPMDIIEERTVGPSMGEENIKRGWHSTLWGFAAIAVFMIIYY 465 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 F ++ L +++ +L L +AA+ +G +++ V++ +R+R+ + Sbjct: 466 -MLFGSVSVLALGVNLLLLTAVLSLLQATLTLPGLAAIALTLGMAIDANVLINERIREEL 524 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + + I + + +++ I+ L + ++G + FA+ GI+ + Sbjct: 525 R---NGNTPQAAIHAGYDRAFDTILDSNVTTMIAGLALFMFGSGPVKGFAVVHVLGILTS 581 Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833 S++ ++ ++ IY +R K +++ Sbjct: 582 MFSAVVVSRALVNLIYGYRRKISKL 606 Score = 47.8 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W IL + +G++ +LPN +S ++V Sbjct: 3 RYPLWKYILVLITLVLGVVYSLPNLFGESPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 ++ LK+E I ++ N + + F ++ + N D + L Sbjct: 38 TAKSSAKLDPALLGQVEDILKQEKITYEAVFLDTNGVKVRFENADTQINAKDVLQGKL 95 >gi|186894297|ref|YP_001871409.1| preprotein translocase subunit SecD [Yersinia pseudotuberculosis PB1/+] gi|186697323|gb|ACC87952.1| protein-export membrane protein SecD [Yersinia pseudotuberculosis PB1/+] Length = 604 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 163/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P++L + + + LGLDLRGG H ++EVD D + + Sbjct: 89 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LR+ L+++ I ++R++ N + + F D + + + ++ + Sbjct: 140 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 188 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + + V+S + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 189 LVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 248 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 308 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ D + V+IS D G T+DNIGKP+A + + Sbjct: 309 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGATMSNFTKDNIGKPMATLFVEYKDSGKK 367 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 368 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 427 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LGS +I +G A + GL + +LFM+V Y K+G++A ++ N++L + ++SLL Sbjct: 428 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 487 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+NI Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 547 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + I Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 429 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 545 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|313201913|ref|YP_004040571.1| protein-export membrane protein secd [Methylovorus sp. MP688] gi|312441229|gb|ADQ85335.1| protein-export membrane protein SecD [Methylovorus sp. MP688] Length = 598 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 166/509 (32%), Positives = 281/509 (55%), Gaps = 24/509 (4%) Query: 30 SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ R PS + + LGLDLRGG H +L+VD ++ + Y + RS L+KE + Sbjct: 93 NLISRSPSWLRSIGALPMYLGLDLRGGVHFLLQVDMKAALDKAAERYVGDFRSALRKERV 152 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + + + F+ + + D L + +K + Sbjct: 153 AYMGVSREGQAVQVRFSSAAELAKAQKILNKEY--------PDLTFRTLDSGNDKLLIAT 204 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+ ++ A++Q+++ + R++++G++E IQ+ G RI+IQLPG QD ++ +++L Sbjct: 205 LNLQAQKRIQEFALKQNIQTLHNRVNELGVAEPIIQQQGLDRIVIQLPGVQDTAKAKEIL 264 Query: 207 GTTAKMSFHKVL---------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257 G TA + V SK FG + + +G LV+ V ++G ++ A Sbjct: 265 GRTATLEIRMVDEEKSDMTTLDKASKGQVPFGDEYYVERNGQPILVKKNVVLTGDYITDA 324 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIP 313 D + + VV ++ D GAR F + T++N+GK + V+TAPVI + I Sbjct: 325 GPGLDQQNGESVVHVTLDGRGARIFKQATKENVGKRMAILLIEKGQAEVITAPVIREEIG 384 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 G+ QISG ++ A ++ +LRAG+L ++I+EER VG +G ++I +G + + G Sbjct: 385 GGRVQISGMANVQEATDVSLLLRAGALAAPMDIIEERTVGPSMGEENIKRGWHSTLWGFA 444 Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433 I +FMI+ Y +G V+ ++ +N++L A+LSLL ATLTLP +A I L +G+A+D+N+L Sbjct: 445 AIAVFMIIYYMLFGSVSVLALGVNLLLLTAVLSLLQATLTLPGLAAIALTLGMAIDANVL 504 Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493 +NERIREE R + ++ G+ RA+ TI DSN+T +IA + LF FG G V+GFA+ Sbjct: 505 INERIREELRNGNTPQAAIHAGYDRAFDTILDSNVTTMIAGLALFMFGSGPVKGFAVVHV 564 Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKS 522 L IL SMF+A+ + RA++ I Y++ S Sbjct: 565 LGILTSMFSAVVVSRALVNLIYGYRRKIS 593 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 89/205 (43%), Gaps = 4/205 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 Q + + + I VGP + E I++G + A+ +++ I + Sbjct: 395 NVQEATDVSLLLRAGALAAPMDIIEERTVGPSMGEENIKRGWHSTLWGFAAIAVFMIIYY 454 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 F ++ L +++ +L L +AA+ +G +++ V++ +R+R+ + Sbjct: 455 -MLFGSVSVLALGVNLLLLTAVLSLLQATLTLPGLAAIALTLGMAIDANVLINERIREEL 513 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + + I + + +++ I+ L + ++G + FA+ GI+ + Sbjct: 514 R---NGNTPQAAIHAGYDRAFDTILDSNVTTMIAGLALFMFGSGPVKGFAVVHVLGILTS 570 Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833 S++ ++ ++ IY +R K +++ Sbjct: 571 MFSAVVVSRALVNLIYGYRRKISKL 595 >gi|260776669|ref|ZP_05885564.1| protein-export membrane protein SecD [Vibrio coralliilyticus ATCC BAA-450] gi|260607892|gb|EEX34157.1| protein-export membrane protein SecD [Vibrio coralliilyticus ATCC BAA-450] Length = 607 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 152/529 (28%), Positives = 279/529 (52%), Gaps = 37/529 (6%) Query: 25 NFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL 81 N + ++ P + + LGLDLRGG H ++EVD D + + + RS L Sbjct: 88 NIVALNLAPATPDWLEAIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSEL 147 Query: 82 KKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140 ++E I ++R + + + + + + + + D + Sbjct: 148 REEKIRYRAIRPSGKEAVEVLLRNEEQLADAKRLLQ--------QNHPDMTFVDSDSDGR 199 Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200 ++ ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD + Sbjct: 200 FTLTATFTEQRLTEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTA 259 Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLN 255 R +++LG TA + F +V G +D DG +++ +V + G + Sbjct: 260 RAKEILGATATLEFREVDDKADLAAAASGRAPAGSEIKQDRDGRPVVLKKRVILGGSSIT 319 Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------- 302 ++ + +P V+IS D G + ++ NIGK +A V Sbjct: 320 D-ASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRKTADGRVIL 378 Query: 303 -----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G Sbjct: 379 TKHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMG 438 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPS 416 +I G A + G+ ++LF ++ Y K+GL+A+ ++ +N++L + ++S++ AT+TLP Sbjct: 439 QQNIDMGIMACIWGMAAVMLFTLLYYRKFGLIANTALMVNLVLIIGVMSMIPGATMTLPG 498 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL +G+AVD+N+L+ ERIREE R ++ ++ G++ A+STI D+NIT LI ++ Sbjct: 499 IAGIVLTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADANITTLITAII 558 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LF G GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 559 LFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRINKLSI 607 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 101/248 (40%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D ++ + N ++ L R G A + + Sbjct: 361 FAEYKDSGRKTADGRVILTKHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGA 420 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI+ I A++++ + ++ F L A T L++++ Sbjct: 421 LIAPISIVEERTIGPSMGQQNIDMGIMACIWGMAAVMLFTLLYYR-KFGLIANTALMVNL 479 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 480 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRD---GRNPQQAIHQ 536 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 537 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLM 596 Query: 824 YDWRAKNA 831 Y + N Sbjct: 597 YGGKRINK 604 >gi|87121907|ref|ZP_01077792.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Marinomonas sp. MED121] gi|86162705|gb|EAQ63985.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Marinomonas sp. MED121] Length = 303 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 158/287 (55%), Gaps = 6/287 (2%) Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 I FM R +SI+ + S+ L GL +G+DF GG + V +L + Sbjct: 1 MKTSNIPFMGMRKPVALLSIILVVASLISLAVKGLEFGLDFTGGTLVEVGYQVAPELDQI 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R+ L Q D+ Q F + +VR+ + + V + + + Sbjct: 61 RALLAENQYDDVVVQTFGANTDIVVRMANVY-----TPTLGDEVLAVLRSDTASVELLRS 115 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 E VG ++ EL +G +G++++ +++Y+ +RF++ F++ ++ L D+ TLG F++ Sbjct: 116 EFVGAQVGEELREQGGLGMLLALAIVMLYVAVRFQFKFSVASVAALAHDVIITLGIFSIM 175 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G EF+LT +AA+L +IGYS+ND +VV DR+R+N ++ I DLI++SIN+TLGR++ Sbjct: 176 GFEFDLTVLAALLAVIGYSLNDTIVVCDRIRENFRIM-REIEPVDLINESINQTLGRTLI 234 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 TS+ +L + +GG I +FA + G+++ SS+F+AA +LL Sbjct: 235 TSLTTIFVLLVLFFFGGEAIHNFAFALLIGVIIGTYSSVFVAANLLL 281 >gi|320173774|gb|EFW48957.1| Protein-export membrane protein SecD [Shigella dysenteriae CDC 74-1112] Length = 604 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHS-----------DLVISSQGSNQLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + + ++++ I +K F L A + LI ++ +G +L Sbjct: 429 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601 >gi|302391496|ref|YP_003827316.1| protein translocase subunit secF [Acetohalobium arabaticum DSM 5501] gi|302203573|gb|ADL12251.1| protein translocase subunit secF [Acetohalobium arabaticum DSM 5501] Length = 290 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 155/292 (53%), Gaps = 7/292 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 ++ + R IS L I + L GLN GIDF GG + ++ V +R L Sbjct: 1 MEIIGKRKIWFIISALIIIVGLGSLVMQGLNLGIDFTGGTLMEFTFDKEVTTGQIREVLA 60 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + S GE L+R + + V+ I + + + TE+VGP Sbjct: 61 GFDLDKKSVVQNTGEMGILIRTV------NLRQDEITEVQSAIKDKYSSAEMLRTEMVGP 114 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 I EL K ++I+AIA+++YI RF++ FA+ A+ L D+ +G F+L G E Sbjct: 115 AIGSELKSKAYWALLIAAIAIVLYISYRFEFKFAIAALMALAHDVLIVIGSFSLVGEEVG 174 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 +AA+LT++GYS+ND +V++DR+R+ Y SF DL +K++ +TL RS+ TSM Sbjct: 175 SPFIAALLTVVGYSINDTIVIFDRIRE-TVKYRDKESFADLNNKAVLDTLPRSINTSMTT 233 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +S+L + ++GG+ I F + + GI+ SSIFIA+P+L+ I W+ + Sbjct: 234 LVSILAILIFGGATIKPFMLALLIGILSGTYSSIFIASPVLVEIDAWKKRRN 285 >gi|52842218|ref|YP_096017.1| preprotein translocase subunit SecD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629329|gb|AAU28070.1| protein export protein SecD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|307610725|emb|CBX00332.1| hypothetical protein LPW_20581 [Legionella pneumophila 130b] Length = 618 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 175/525 (33%), Positives = 280/525 (53%), Gaps = 38/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + + GLDLRGG H +LEVD + ++ + + L++ GI Sbjct: 103 NLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREAGI 162 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +R + +K I L F DS EN ++ + V + T T+ I Sbjct: 163 RYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDV----------VFVKTKTQNSILG 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 +S ++ + + IEQ+M I+R R++++G+ E+ +Q+ G+ R+ + LPG QD +R +Q+ Sbjct: 213 AISPAELNSIRQNTIEQTMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260 LG TA + FH V N + DG+ L++ +V +SG + A ++ Sbjct: 273 LGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVVLSGDSITSAVSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGR 301 FD +T P V I G F +VTR+NIGK + V Sbjct: 333 FDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEE 392 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + Q QI+G + A LA +LRAG+LP + VEER VG LG ++I Sbjct: 393 RVISAPVIQNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENI 452 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 +G ++ G+ LI++ M+V Y +GL+AD ++ LN++ ALLS++ ATLTLP IAGIV Sbjct: 453 RRGLISLEVGMGLILVLMLVYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R S ++ G+ RA+STI D+N+T LI ++LF G Sbjct: 513 LTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 G VRGFA+ + L +L SM T I+ RA++ + + +K + I Sbjct: 573 TGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIG 617 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 97/255 (38%), Gaps = 4/255 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 G V + + + + + +N L G + ++ Sbjct: 363 GKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVIQNALGSNFQITGLTDSKEASNL 422 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + VGP + +E IR+G++ + + +L+ + + + + F L A Sbjct: 423 ALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHF-FGLIA 481 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 L+L++ ++ L +A ++ +G +V+ V++Y+R+R+ ++ +S Sbjct: 482 DIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELR---NGLS 538 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 + I + ++ I + + G + FA+ ++ G++ + + I Sbjct: 539 PQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYT 598 Query: 817 APILLFIYDWRAKNA 831 I+ + Y R Sbjct: 599 RAIVNWYYGGRNVKK 613 Score = 42.4 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 27/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ +I IG + A+PN ++ + V Sbjct: 4 KYPLWKNLMLIVIAVIGFVYAIPNLYTENPV---------------------------VQ 36 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + +++ S LK + S+ ++ + + F+ + + D + L Sbjct: 37 ISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSSTDSQLLARDVIKNSL 94 >gi|119384156|ref|YP_915212.1| preprotein translocase subunit SecF [Paracoccus denitrificans PD1222] gi|119373923|gb|ABL69516.1| protein translocase subunit secF [Paracoccus denitrificans PD1222] Length = 330 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 169/307 (55%), Gaps = 7/307 (2%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 R L+PD + F R ++ G+S + S+ +L GLN+GIDFKGG + + Sbjct: 1 MAFRLKLVPDNTSFNFFRWQWLTFGVSAAAMVGSVLVLLVMGLNFGIDFKGGTTIRTESP 60 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGE------KNFLVRLQYQPGDSVAQTRVLEMVKK 640 ++ R + L +GD+S ++R+ L ++ Sbjct: 61 TAFEVGEYRQAMSDLDLGDVSITEVFDPSFGETKHVAMIRIGTTDETGSVTPAQLNEIEA 120 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + P E VGPK+S ELI+ + V + I ++ YIW+RF+W FALGA+ +L Sbjct: 121 ALKTVDPQVAFAAVESVGPKVSGELIKTALYAVGAATIGIMFYIWLRFEWQFALGAVISL 180 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 I D+ T+G F+LF + F+LT +AA+LT +G+S ND VVV+DR+R+N+ Y T DL Sbjct: 181 IHDVLLTVGLFSLFQLRFDLTTIAALLTTLGFSCNDTVVVFDRLRENLIKYKTR-PLLDL 239 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ++ + NETL R++ T++ I++ M ++GG VI F I M +G++V S+I++A I+ Sbjct: 240 MNLTCNETLSRTIMTAVTTGIALTAMLIFGGDVIRDFVIAMLWGVIVGCYSTIYVAKNIV 299 Query: 821 LFIYDWR 827 L++ R Sbjct: 300 LWLGVKR 306 >gi|154148803|ref|YP_001406063.1| preprotein translocase subunit SecF [Campylobacter hominis ATCC BAA-381] gi|153804812|gb|ABS51819.1| protein-export membrane protein SecF [Campylobacter hominis ATCC BAA-381] Length = 323 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 158/285 (55%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM+ R+ S + + S+ LLF G NYGIDF GG + V ++ DL+++R + Sbjct: 10 YNFMKFRYAAFAFSAILMLGSMFLLFFQGFNYGIDFSGGTLIQVKYDQKADLALIRKTIN 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + + G +V D L +I + I+ ++VGP Sbjct: 70 KVDFLKDAAVTEFGSDQEIVIRYSSAHDK--VQENLNAKMNEILKPTGNFEIRRVDVVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ +L +KGI+ V +S + +LIYI +RF+W FA+ AI + D+ T+G LF I+FN Sbjct: 128 KVGDDLKQKGIMAVAVSLVLILIYIAVRFEWRFAIAAIFSEFHDVIITIGAIILFKIDFN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AA+LT++GYS+ND ++V+DR+R+ +K + D+I+++++ TL R++ TS Sbjct: 188 LEILAAILTILGYSLNDTIIVFDRIREGIKE-SKFAKINDVINEAVSATLSRTILTSFTT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 ISV + ++GG +I +F+ M GIV SS FIAA L++ Sbjct: 247 LISVAILLLFGGDMIYNFSFVMMIGIVFGTFSSTFIAAQSLIWFK 291 >gi|261856764|ref|YP_003264047.1| protein-export membrane protein SecD [Halothiobacillus neapolitanus c2] gi|261837233|gb|ACX97000.1| protein-export membrane protein SecD [Halothiobacillus neapolitanus c2] Length = 620 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 162/518 (31%), Positives = 276/518 (53%), Gaps = 35/518 (6%) Query: 32 LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 R+ + + LGLDLRGG H ++++D + L+ D +R L++ I + Sbjct: 107 APRWMQNLGAKPMYLGLDLRGGVHFLMQIDMQAAIKTALERRVDGMRGDLRQANIRYVAA 166 Query: 92 -RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 + ++I L F D+ ++ + + K + + ++ + Sbjct: 167 DVENGDEIALRFPDAAARDAALK--------SMAGNYPELKFSTDERNGQPFLTAKFTDV 218 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 A++Q++ +R R++++G++E IQ+ G RI+++LPG QD R ++++G TA Sbjct: 219 GATAERKAAVDQNITTLRNRVNELGVAEPLIQQQGDDRIVVELPGIQDTVRAKEIIGATA 278 Query: 211 KMSFHKVL-------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 + F V R + DG L++ +V ++G + GA++ FD Sbjct: 279 TLEFRLVSGTPTDWVDAEQSGRVPPDARLYHEKDGRPVLLKRQVIVTGDRITGASSGFDQ 338 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI--------------- 308 ++ P V ++ D GARR ++T NIGK + VV ++ Sbjct: 339 RSGSPAVFVNLDGQGARRMADITGQNIGKQMGVVFIEHRTETKIVDGKPVKDKKVIQQVI 398 Query: 309 ----NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 Q + + QI+G + E A LA +LRAG+L ++IVEER VG LG+ +I G Sbjct: 399 NVATIQDQLANRFQITGLDSPEEARDLALLLRAGALRAPMDIVEERTVGPSLGAQNIQSG 458 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 A + G L+ +FM++ Y +G+ A ++ +N+IL +A+LS+L ATLTLP IAG+VL + Sbjct: 459 VNASILGFALVAVFMLIYYRVFGVTAIVALGVNLILIVAVLSMLQATLTLPGIAGMVLTL 518 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+NERIREE R + ++ G+ RA++TI DS++T L+A +VLF G GA Sbjct: 519 GIAVDANVLINERIREELRNGLTPHAAIKAGYERAFATIIDSHVTTLLAAIVLFALGAGA 578 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 V+GFA+T+ + IL S+FTAI + RA++ I + + Sbjct: 579 VKGFAVTLTIGILASLFTAIMVTRALVNLIYGRRVRLN 616 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 100/281 (35%), Gaps = 4/281 (1%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 S + + G V + +V + N Sbjct: 342 SPAVFVNLDGQGARRMADITGQNIGKQMGVVFIEHRTETKIVDGKPVKDKKVIQQVINVA 401 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 ++ L G + + + + I VGP + + I+ G+ Sbjct: 402 TIQDQLANRFQITGLDSPEEARDLALLLRAGALRAPMDIVEERTVGPSLGAQNIQSGVNA 461 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 I+ + +++ I ++ F + AI L +++ + ++ L +A ++ +G Sbjct: 462 SILGFALVAVFMLIYYRV-FGVTAIVALGVNLILIVAVLSMLQATLTLPGIAGMVLTLGI 520 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 +V+ V++ +R+R+ ++ ++ I + + + ++ + + G Sbjct: 521 AVDANVLINERIREELR---NGLTPHAAIKAGYERAFATIIDSHVTTLLAAIVLFALGAG 577 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + FA+ + GI+ + ++I + ++ IY R + +I Sbjct: 578 AVKGFAVTLTIGILASLFTAIMVTRALVNLIYGRRVRLNKI 618 >gi|237749368|ref|ZP_04579848.1| preprotein translocase subunit SecF [Oxalobacter formigenes OXCC13] gi|229380730|gb|EEO30821.1| preprotein translocase subunit SecF [Oxalobacter formigenes OXCC13] Length = 313 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 152/302 (50%), Gaps = 2/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ L+ GL+ ++F GG + V + D Sbjct: 1 MEFFRIKKDIPFMRHALIFNIISLITFLAAVFFLWHKGLHLSVEFTGGTVMEVNYQKAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R + L GD G V + V V +T+ P Sbjct: 61 LEGIRGTIRELGFGDDFQVQNFGRAQD-VMINLPLQKDVTSAEQSARVMAALTQQNPDVH 119 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ EL G++ + + I ++IY+ RF+W +A+ AI + DI LGF Sbjct: 120 LQRVEFVGPQVGDELTHNGLMALGMVVIGIIIYLAFRFEWKYAISAIIANLHDIVIILGF 179 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ V+++DR+R+N + S +++++ +I T+ Sbjct: 180 FAFFQWEFSLSVLAAVLAILGYSVNESVIIFDRIRENFRKMRK-ASVKEIVNHAITSTIS 238 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R+V T I VL M ++GG + +FAI + GI SS+F+AA I +++ R Sbjct: 239 RTVITHGCTQIMVLSMLIFGGPTLHNFAIALTIGICFGIYSSVFVAAAIAIWLGIKREDL 298 Query: 831 AR 832 + Sbjct: 299 VK 300 >gi|229523434|ref|ZP_04412841.1| protein-export membrane protein SecD [Vibrio cholerae TM 11079-80] gi|229339797|gb|EEO04812.1| protein-export membrane protein SecD [Vibrio cholerae TM 11079-80] Length = 617 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 152/523 (29%), Positives = 276/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D + + Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHHGYANAFSTIADANITTLITAIILFAVGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+V+GFAIT+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 GSVKGFAITLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 96/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHH 546 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G + FAI ++ GI+ + ++I I+ + Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGSVKGFAITLSIGILTSMFTAIVGTRCIVNLL 606 Query: 824 YDWRAKNA 831 Y + N Sbjct: 607 YGGKRINK 614 Score = 40.1 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + + L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + L K + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDIISEAL 95 >gi|222528641|ref|YP_002572523.1| protein-export membrane protein SecF [Caldicellulosiruptor bescii DSM 6725] gi|222455488|gb|ACM59750.1| protein-export membrane protein SecF [Caldicellulosiruptor bescii DSM 6725] Length = 310 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 149/303 (49%), Gaps = 9/303 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R + +SIL + + F GLNY IDF GG L + ++ + Sbjct: 1 MTKIDFMGKRKYFYIVSILVMVIGLISYFVQGLNYDIDFTGGTVLEINLHKVPTAQEISE 60 Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI------TEIVPL 648 L G + E + + +T + + + K+ + Sbjct: 61 LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKKKTELSKETRDKLFGEIAKKYNLKK 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + + + VG IS EL + I V+I++I MLIYI IRF++ F A+ LI D+ L Sbjct: 121 EDLISYQNVGATISSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + LF I N T +AA+LT++GYS+ND +VV+DR+R+N ++ + +DL++ S+N+T Sbjct: 181 TVYTLFKIPLNSTFIAAILTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +GRS+ T+M+ I ++ + + G I FA P+ G++ SSIFIA + Sbjct: 240 IGRSIATAMSVIIVLVVLYIMGVQAIKEFAFPLLIGVISGTYSSIFIATALWFDWELTTR 299 Query: 829 KNA 831 K Sbjct: 300 KKK 302 >gi|217972749|ref|YP_002357500.1| preprotein translocase subunit SecD [Shewanella baltica OS223] gi|217497884|gb|ACK46077.1| protein-export membrane protein SecD [Shewanella baltica OS223] Length = 616 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 161/507 (31%), Positives = 273/507 (53%), Gaps = 32/507 (6%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 + + LGLDLRGG H ++EVD + + + + RS L++E I +R I + Sbjct: 119 SPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRTNTTGIEIK 178 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 F D+ + + + D + + V+S + Q+ A++ Sbjct: 179 FRDAESLASAERFLKSRSK--------DMVFTDASRGEDFALQAVMSDVYLKQIKEEALQ 230 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221 Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++LG TA + FH V Sbjct: 231 QNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKA 290 Query: 222 SKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 G + +G +++ +V ++G H+ GA +FD + +P V I+ D Sbjct: 291 DPNAAQSGRLPAGSEVYQRREGGTVILKKEVMLTGDHITGAQPSFDQYS-RPQVSINLDA 349 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE---------- 326 G F +VT+DNIGKP+A + + + Sbjct: 350 KGGTIFSDVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFV 409 Query: 327 -------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 A LA +LRAG+L ++IVEER +G LG+++I G A+V G+ +++LFM Sbjct: 410 ITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFM 469 Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERI 438 +V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL +G+AVD N+L+ ERI Sbjct: 470 LVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERI 529 Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498 REE R +SV ++ G+ A+STI D+NIT + ++LF G GAV+GFA+T+ + I Sbjct: 530 REELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLMIGIAT 589 Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDI 525 SMFTAI R+++ I K++K++ I Sbjct: 590 SMFTAIVGTRSIVNAIWGGKRVKTLSI 616 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 94/241 (39%), Gaps = 6/241 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S R+ S+++ I + + + + ++ + Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I +GP + E I+ G+ ++ +L+++ + ++ F L A L ++ +G Sbjct: 436 IVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYR-GFGLIANIALTANLVMVVGV 494 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828 ++ F++ L + G + FA+ + GI + ++I I+ R Sbjct: 552 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRV 611 Query: 829 K 829 K Sbjct: 612 K 612 >gi|261868466|ref|YP_003256388.1| preprotein translocase subunit SecF [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413798|gb|ACX83169.1| protein-export membrane protein SecF [Aggregatibacter actinomycetemcomitans D11S-1] Length = 321 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 166/307 (54%), Gaps = 6/307 (1%) Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 + + + ++FM+ R WG S++ S+ +FT N+G+DF GG+ + Sbjct: 5 NRSQSIREIQGIKLPFRLVEFMKYRMWGYLASVIIIAVSLFFVFTKSFNWGLDFTGGVVV 64 Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 ++P DL +RS L I Q G ++ ++RL ++ + VK+ Sbjct: 65 DTHFSQPADLEKIRSTLVQNGIESPLVQTTGGVRDVMIRLPATD-----NAQIGDNVKRM 119 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 ++ + I++TE VGP + EL + I + + I +L+Y+ IRF+W A+G + +L Sbjct: 120 LSTLDSDIQIRSTEFVGPNVGEELTQGAIYATLTTLIMLLLYVGIRFEWRLAVGGVLSLA 179 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 D+ TLG F+ IE +LT +AA+L+++GYS+ND +VV+DR+R+N + S D+I Sbjct: 180 HDVIVTLGAFSYLQIEMDLTFIAAILSVVGYSLNDSIVVFDRVRENFRKIRRIASI-DII 238 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + S+ +TL R++ TS+ I V+ + V+GG I SF++ + GI SSIF+A I Sbjct: 239 NISLTQTLSRTIMTSVTTLIVVIALFVFGGPTIHSFSLALLIGIGFGTYSSIFVAIAIAY 298 Query: 822 FIYDWRA 828 + R Sbjct: 299 DLGLDRE 305 >gi|187930028|ref|YP_001900515.1| preprotein translocase subunit SecF [Ralstonia pickettii 12J] gi|187726918|gb|ACD28083.1| protein-export membrane protein SecF [Ralstonia pickettii 12J] Length = 323 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 90/305 (29%), Positives = 162/305 (53%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S L I ++ LF GL+ ++F GG + V + D Sbjct: 1 MEFFRIRRDIPFMKHALILNALSFLTFIAAVFFLFHKGLHLSVEFTGGTVMEVAYTQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L +R ++E L D QNF ++ ++RL + G A + V + + P Sbjct: 61 LPKIRGDVEKLGYADAQVQNFGTSRDVMIRLPLKTGPDGKPIASAVQSQQVMTALNAVNP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + +Q E VGP++ +EL G++ ++ + ++IY+ IRF+W FA+ + + D+ Sbjct: 121 DAKLQRVEFVGPQVGKELATDGLLALLFVVVGIVIYLSIRFEWKFAVAGVIANLHDVVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +A VL ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + V+ M V+GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTIITHGSTEMMVVSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|227884584|ref|ZP_04002389.1| preprotein translocase subunit SecD [Escherichia coli 83972] gi|300988040|ref|ZP_07178520.1| protein-export membrane protein SecD [Escherichia coli MS 45-1] gi|300997405|ref|ZP_07181745.1| protein-export membrane protein SecD [Escherichia coli MS 200-1] gi|301049608|ref|ZP_07196559.1| protein-export membrane protein SecD [Escherichia coli MS 185-1] gi|306813126|ref|ZP_07447319.1| preprotein translocase subunit SecD [Escherichia coli NC101] gi|227838670|gb|EEJ49136.1| preprotein translocase subunit SecD [Escherichia coli 83972] gi|300298601|gb|EFJ54986.1| protein-export membrane protein SecD [Escherichia coli MS 185-1] gi|300304224|gb|EFJ58744.1| protein-export membrane protein SecD [Escherichia coli MS 200-1] gi|300407592|gb|EFJ91130.1| protein-export membrane protein SecD [Escherichia coli MS 45-1] gi|305853889|gb|EFM54328.1| preprotein translocase subunit SecD [Escherichia coli NC101] gi|307628123|gb|ADN72427.1| preprotein translocase subunit SecD [Escherichia coli UM146] gi|312944985|gb|ADR25812.1| preprotein translocase subunit SecD [Escherichia coli O83:H1 str. NRG 857C] gi|315289877|gb|EFU49267.1| protein-export membrane protein SecD [Escherichia coli MS 110-3] gi|315294213|gb|EFU53564.1| protein-export membrane protein SecD [Escherichia coli MS 153-1] gi|315299574|gb|EFU58822.1| protein-export membrane protein SecD [Escherichia coli MS 16-3] gi|320197156|gb|EFW71773.1| Protein-export membrane protein SecD [Escherichia coli WV_060327] gi|323191326|gb|EFZ76589.1| protein-export membrane protein SecD [Escherichia coli RN587/1] gi|324010085|gb|EGB79304.1| protein-export membrane protein SecD [Escherichia coli MS 57-2] gi|324010668|gb|EGB79887.1| protein-export membrane protein SecD [Escherichia coli MS 60-1] gi|330910202|gb|EGH38712.1| protein-export membrane protein SecD [Escherichia coli AA86] Length = 604 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ + N ++ L G + + + Sbjct: 358 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + + ++++ I +K F L A + LI ++ Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 477 ILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I V+ + G I FAI G+ + ++I I+ + Sbjct: 534 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593 Query: 824 YDWRAKNA 831 Y + Sbjct: 594 YGGKRVKK 601 >gi|54297927|ref|YP_124296.1| preprotein translocase subunit SecD [Legionella pneumophila str. Paris] gi|148359572|ref|YP_001250779.1| protein export protein SecD [Legionella pneumophila str. Corby] gi|296107614|ref|YP_003619315.1| protein export protein [Legionella pneumophila 2300/99 Alcoy] gi|53751712|emb|CAH13134.1| hypothetical protein lpp1982 [Legionella pneumophila str. Paris] gi|148281345|gb|ABQ55433.1| protein export protein SecD [Legionella pneumophila str. Corby] gi|295649516|gb|ADG25363.1| protein export protein [Legionella pneumophila 2300/99 Alcoy] Length = 618 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 175/525 (33%), Positives = 280/525 (53%), Gaps = 38/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + + GLDLRGG H +LEVD + ++ + + L++ GI Sbjct: 103 NLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREAGI 162 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +R + +K I L F DS EN ++ + V + T T+ I Sbjct: 163 RYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDV----------VFVKTKTQNSILG 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 +S ++ + + IEQ+M I+R R++++G+ E+ +Q+ G+ R+ + LPG QD +R +Q+ Sbjct: 213 AISPAELNSIRQNTIEQTMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260 LG TA + FH V N + DG+ L++ +V +SG + A ++ Sbjct: 273 LGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVVLSGDSITSAVSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGR 301 FD +T P V I G F +VTR+NIGK + V Sbjct: 333 FDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEE 392 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + Q QI+G + A LA +LRAG+LP + VEER VG LG ++I Sbjct: 393 RVISAPVIQNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENI 452 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 +G ++ G+ LI++ M+V Y +GL+AD ++ LN++ ALLS++ ATLTLP IAGIV Sbjct: 453 RRGLISLEVGMGLILVLMLVYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R S ++ G+ RA+STI D+N+T LI ++LF G Sbjct: 513 LTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 G VRGFA+ + L +L SM T I+ RA++ + + +K + I Sbjct: 573 TGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIG 617 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 97/255 (38%), Gaps = 4/255 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 G V + + + + + +N L G + ++ Sbjct: 363 GKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVIQNALGSNFQITGLTDSKEASNL 422 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + VGP + +E IR+G++ + + +L+ + + + + F L A Sbjct: 423 ALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHF-FGLIA 481 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 L+L++ ++ L +A ++ +G +V+ V++Y+R+R+ ++ +S Sbjct: 482 DIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELR---NGLS 538 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 + I + ++ I + + G + FA+ ++ G++ + + I Sbjct: 539 PQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYT 598 Query: 817 APILLFIYDWRAKNA 831 I+ + Y R Sbjct: 599 RAIVNWYYGGRNVKK 613 Score = 43.1 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 27/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ +I IG + A+PN ++ + V Sbjct: 4 KYPLWKNLMLIVIAVIGFIYAIPNLYTENPV---------------------------VQ 36 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + +++ S LK + S+ ++ + + F+ + + D + L Sbjct: 37 ISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSSTDSQLLARDVIKNSL 94 >gi|197116902|ref|YP_002137329.1| preprotein translocase subunit SecF [Geobacter bemidjiensis Bem] gi|197086262|gb|ACH37533.1| protein export membrane protein SecF [Geobacter bemidjiensis Bem] Length = 313 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 145/299 (48%), Gaps = 8/299 (2%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFT---HGLNYGIDFKGGIQLGVLANRP 588 + I F+ R IS + +I + + + N GIDF GG + + P Sbjct: 1 MQLISNTNIDFIGKRKVSFVISTIIAIIGLIGILQIARNSANMGIDFSGGTSVQLSFTHP 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + R L +++ Q G R+ + G S A K Sbjct: 61 IPQEKARELLSDHLFREVNLQEIKGGN----RILVKVGKSGADVSETITAVFKKEFPGNA 116 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 ++++ VGP I +L + V +S I +++YI RF + F +GAI + D+ + Sbjct: 117 FVVESSTDVGPSIGNKLKTDTLKAVGLSMIGIILYIAWRFDFKFGVGAIAATLHDVLAMV 176 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 F L E NL + AVLT+ GYS+ D VVV+DR+R+N+ Y + L ++SINE Sbjct: 177 ALFYLMNKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKYV-DDTKEGLFNRSINEV 235 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 L R+V TS+ F++ + + ++GG VI FA+ + GIV+A SSIFIA+PI+ + R Sbjct: 236 LPRTVITSLTTFLAAISLFLFGGEVIHDFALALVAGIVIATYSSIFIASPIVAVLEARR 294 >gi|312623050|ref|YP_004024663.1| protein-export membrane protein secf [Caldicellulosiruptor kronotskyensis 2002] gi|312203517|gb|ADQ46844.1| protein-export membrane protein SecF [Caldicellulosiruptor kronotskyensis 2002] Length = 310 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 147/303 (48%), Gaps = 9/303 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R + +SIL + + F G NY IDF GG L + ++ + Sbjct: 1 MTKIDFMGKRKYFYIVSILVMVIGLISYFVQGFNYDIDFTGGTVLEINLHKVPTAQEISE 60 Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--- 651 L G + E + + +T + + + K+ + Sbjct: 61 LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKTKTELSKETRDKLFAEIAKRYNLKK 120 Query: 652 ---QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + + VG IS EL + I V+I++I MLIYI IRF++ F A+ LI D+ L Sbjct: 121 EDLISYQNVGATISSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + LF I N T +AA+LT++GYS+ND +VV+DR+R+N ++ + +DL++ S+N+T Sbjct: 181 TVYTLFKIPLNSTFIAAILTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +GRS+ T+M+ I ++ + + G I FA P+ G++ SSIFIA + Sbjct: 240 IGRSIATAMSVIIVLVVLYIMGVQSIKEFAFPLLIGVISGTYSSIFIATALWFDWELSTR 299 Query: 829 KNA 831 K Sbjct: 300 KKK 302 >gi|312795157|ref|YP_004028079.1| protein translocase subunit secD [Burkholderia rhizoxinica HKI 454] gi|312166932|emb|CBW73935.1| Protein translocase subunit secD [Burkholderia rhizoxinica HKI 454] Length = 685 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 161/516 (31%), Positives = 265/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L A P +L + LGLDLRGG H +L+VD +N L Sbjct: 109 IVALNLQSASPRWLASLHA---------LPMYLGLDLRGGVHFLLQVDLAGALNKKLDAD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ + I + ++ + ++F D ++ + + ++ Sbjct: 160 AADARTLLRDKSIRAGGVNRVGQTVVVNFVDQDVANRARQLLSDNVTELTWQVQPAAGGY 219 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 +V + V A++Q++ + R++++G++E +Q+ G+ RI+++L Sbjct: 220 QVVGA--------FTPAAQKTVQDSALKQNITTLHNRVNELGVAEPIVQQQGADRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSK----KGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + N G +G ++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARMADYQNPVRNINDPVPVGDDLFTQGNGAPVYLKKQVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT---AP 306 +G + A+A FD +P V I D G R +V+RDNIGKP+A+VL + Sbjct: 332 TGDRITDASAGFDEHQ-RPAVKIRLDARGGRVLRDVSRDNIGKPMAIVLFEKNKGELLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ QI+G T + A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 391 ATIQSELGENFQITGQPTPQAATDLALLLRAGSLAAPMEIIEERTIGPSLGADNIRKGFD 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 ++ G I +FMI Y +GL++ ++ +N++L +A+LS++ ATLTLP IA I L +G+ Sbjct: 451 SVQYGFAAIAVFMIAYYMLFGLISVIALSVNLLLLVAVLSMMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+D+N+L+NERIREE R+ ++ GFS A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDANVLINERIREELRRGAPAQLAIQNGFSHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 GFA+ + IL SMF+A+ R ++ KK Sbjct: 571 GFAVVHCIGILTSMFSAVFFARGLVNLWYGGKKKLK 606 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 85/209 (40%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IRKG V A+ +++ Sbjct: 404 TGQPTPQAATDLALLLRAGSLAAPMEIIEERTIGPSLGADNIRKGFDSVQYGFAAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F L ++ L +++ + ++ L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGLISVIALSVNLLLLVAVLSMMQATLTLPGIAAIALALGMAIDANVLINERI 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + + +++ I+ L + +G + FA+ G Sbjct: 523 REELR---RGAPAQLAIQNGFSHAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCIG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F A ++ Y + K + Sbjct: 580 ILTSMFSAVFFARGLVNLWYGGKKKLKSL 608 Score = 47.0 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 29/124 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IGLL LPNF ++ ++V Sbjct: 3 RYPLWKYVVMLVALAIGLLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMR----QIQNKITLSFADSRFKENIADKVTL 117 + + S L G+ + I + D+ + + D + Sbjct: 38 SGKATVKLDSSVLNTVESTLAANGVQADDVTFDNASQNANIRVRLKDTDTQLRVKDLLQK 97 Query: 118 FLQG 121 L Sbjct: 98 ALNA 101 >gi|253999940|ref|YP_003052003.1| preprotein translocase subunit SecF [Methylovorus sp. SIP3-4] gi|253986619|gb|ACT51476.1| protein-export membrane protein SecF [Methylovorus sp. SIP3-4] Length = 312 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 94/289 (32%), Positives = 165/289 (57%), Gaps = 3/289 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I FM IS++ + S+ L GLN G+DF GG + V + D+ +R ++ Sbjct: 10 IPFMSYGRLTTAISLITFLLSVFFLAHRGLNLGVDFTGGTMMEVSYPQAADIGKIREAVD 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 S+ + D + QNF ++ L+RL +P ++ + + E V + + P + E VG Sbjct: 70 SVGLKDATVQNFGTSRDVLIRLPLKP--ELSISALSEQVLTALQKADPNVKMNRVESVGA 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ +EL G + +++ +I ++ Y+ +RF+W FA+ A+ + D+ LGFFA F EFN Sbjct: 128 QVGQELYENGALALLLVSIGIMAYLALRFEWRFAVAAVVANMHDVVIILGFFAFFQWEFN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AAVL ++GYSVN+ VVV+DR+R+N + S ++I+ +I T+ R+V T + Sbjct: 188 LTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRK-ASVPEVINNAITRTMSRTVITHFST 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + VL M +GG V+ +F++ + GI+ SS+ +A+PI +++ R Sbjct: 247 QLMVLSMLFFGGEVLHNFSLALTIGILFGIYSSVLVASPIAMYLGVSRE 295 >gi|146310538|ref|YP_001175612.1| preprotein translocase subunit SecD [Enterobacter sp. 638] gi|145317414|gb|ABP59561.1| protein-export membrane protein SecD [Enterobacter sp. 638] Length = 615 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 288/524 (54%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLASINAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNMDGLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D+ ++ D ++ + ++ ++ Sbjct: 164 PYTTVRKEDNYGMSITFRDAAARDQAVDYLSTRHR-----------DLVISRQGSNQLRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++ Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G +G ++ +V ++G H+ +T+ Sbjct: 273 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKETREGQPVVLYKRVILTGDHITDSTS- 331 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 + ++P V+IS D G T+DNIGKP+A + + Sbjct: 332 NQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKEEE 391 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIT 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL + +LFM+ Y K+GL+A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 452 QGLEACLAGLAVSILFMLFFYKKFGLIATTALIANLVLIIGIMSLLPGATLTMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE +SV ++D G+ A+S+IFD+N+T LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYKGAFSSIFDANVTTLIKVLILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ +K F L A T LI ++ +G +L Sbjct: 440 TIGPTLGMQNITQGLEACLAGLAVSILFMLFFYK-KFGLIATTALIANLVLIIGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + S + ID+ Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYKGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I VL + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612 >gi|212709163|ref|ZP_03317291.1| hypothetical protein PROVALCAL_00196 [Providencia alcalifaciens DSM 30120] gi|212688075|gb|EEB47603.1| hypothetical protein PROVALCAL_00196 [Providencia alcalifaciens DSM 30120] Length = 336 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 93/319 (29%), Positives = 170/319 (53%), Gaps = 2/319 (0%) Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 M+ +I + + + + L FMR ISI+ I S ++ G Sbjct: 1 MVNVLISCQFKEHVVAQDYTVEQLNYGRKVYDFMRWDNVAFSISIILLIASCVIIGVKGF 60 Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 N+G+DF GG + + ++P DL +R +L + D QNF ++ ++RL G Sbjct: 61 NWGLDFTGGTVIEINLSQPADLDKIRDSLSNSNHKDPLIQNFGSSRDIMIRLPPVEG-VA 119 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 Q E++ + +T++ E VGP + EL + G + ++ + I +LIY+ RF+ Sbjct: 120 GQEVGKEIITIINKNVDEQATVKRIEFVGPSVGAELAQTGALALLTALICILIYVGFRFE 179 Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 W A GA+ L D+ TLG +LF IE ++T VA+++++IGYS+ND +VV DR+R+N + Sbjct: 180 WRLAAGAVLALAHDVVITLGILSLFHIEIDMTIVASLMSVIGYSLNDSIVVSDRIRENFR 239 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809 + ++++ S+ +TL R++ TS + VL + ++GG+++ F++ M G+ + Sbjct: 240 KIRRGTPY-EIMNVSLTQTLSRTIMTSATTLLVVLMLYLFGGAMLEGFSLVMLIGVTIGT 298 Query: 810 SSSIFIAAPILLFIYDWRA 828 SSI++A+ + L + R Sbjct: 299 ISSIYVASALALKMGMKRE 317 >gi|126725449|ref|ZP_01741291.1| protein-export membrane protein SecD [Rhodobacterales bacterium HTCC2150] gi|126704653|gb|EBA03744.1| protein-export membrane protein SecD [Rhodobacterales bacterium HTCC2150] Length = 554 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 188/498 (37%), Positives = 282/498 (56%), Gaps = 9/498 (1%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 +P +P ++LGLDLRGG+HL+ EV ++ + Y E+R L+ E V ++R Sbjct: 57 AGWPGYLPSALVNLGLDLRGGAHLLGEVVVEEVYAARMDAYWPEVRDALRAERDVVGTVR 116 Query: 93 QI---QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149 + ++++ + + E + Q V + V + EI+I LS+ Sbjct: 117 RQPSPEDQLRVRISKPEAIEAAVAALEALAQPVVTLTGVGTNDIEVS-AEGAEITIQLSE 175 Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209 + ++QS+EIIR+R+D++G E TIQR G RILIQ+PG L+ L+GTT Sbjct: 176 AEKLATDNRTVQQSLEIIRRRVDEVGTREPTIQRQGERRILIQVPGIGSAGELKALIGTT 235 Query: 210 AKMSFHKVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 AK++FH V+ G R +G Y++E ++G L A +FD Sbjct: 236 AKLTFHPVVSRTGDGEQPPGARNVIYPDVAEEGLFYVLEKTPVVTGDDLVDAQPSFDQNG 295 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 +P V F+ G R+F T +NIG P A+VLD V++APVI I G I+GNF + Sbjct: 296 -RPAVSFRFNASGGRKFGNYTAENIGSPFAIVLDSEVISAPVIQSHIAGGSGIITGNFDV 354 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 + LA +LRAG+LP K+N +EER +G +LG DSI G A + +++FM + YG Sbjct: 355 AESTNLAVLLRAGALPAKINFLEERTIGPELGQDSIDAGKIASIVAFAAVLVFMFLSYGM 414 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 +GL A+ ++ +NV L LLS +GATLTLP IAGIVL IG+AVD+N+L+ ERIREE + Sbjct: 415 FGLFANVALIINVALIFGLLSAIGATLTLPGIAGIVLTIGMAVDANVLIFERIREELKTA 474 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 + ++++G+ +A S I D+NIT + V+LF G G VRGFA+T+ L I S+FTAI Sbjct: 475 KGPARAIELGYEKALSAIVDANITTFMTAVILFVMGSGPVRGFAVTLALGIATSVFTAIF 534 Query: 506 IVRAMMIFIIRYKKMKSI 523 + R ++ K+ K I Sbjct: 535 VTRLLIAMWFERKRPKKI 552 Score = 155 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 94/209 (44%), Gaps = 4/209 (1%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 G+ V + + +GP++ ++ I G + I++ A+L+ Sbjct: 347 IITGNFDVAESTNLAVLLRAGALPAKINFLEERTIGPELGQDSIDAGKIASIVAFAAVLV 406 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++++ + F L A LI+++ G + G L +A ++ IG +V+ V++++ Sbjct: 407 FMFLSYGM-FGLFANVALIINVALIFGLLSAIGATLTLPGIAGIVLTIGMAVDANVLIFE 465 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ +K T+ I+ + L V ++ F++ + + V G + FA+ +A Sbjct: 466 RIREELK---TAKGPARAIELGYEKALSAIVDANITTFMTAVILFVMGSGPVRGFAVTLA 522 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831 GI + ++IF+ ++ ++ + Sbjct: 523 LGIATSVFTAIFVTRLLIAMWFERKRPKK 551 >gi|332768514|gb|EGJ98697.1| protein-export membrane protein SecF [Shigella flexneri 2930-71] Length = 304 Score = 212 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 85/286 (29%), Positives = 161/286 (56%), Gaps = 1/286 (0%) Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 MR +W GIS L I +I ++ G N+G+DF GG + + +P ++ V+R L+ Sbjct: 1 MRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAG 60 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 + QNF + +VR+ G++ Q +++K + ++ E VGP + Sbjct: 61 FEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVG 120 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 +L + G + ++ + +++L+Y+ RF+W A G + L D+ TLG +LF IE +LT Sbjct: 121 ADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALTHDVIITLGILSLFHIEIDLTI 180 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ +TL R++ TS + Sbjct: 181 VASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSGTTLMV 239 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 240 ILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 285 >gi|332531795|ref|ZP_08407680.1| protein-export membrane protein SecD [Pseudoalteromonas haloplanktis ANT/505] gi|332038771|gb|EGI75213.1| protein-export membrane protein SecD [Pseudoalteromonas haloplanktis ANT/505] Length = 619 Score = 212 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 160/519 (30%), Positives = 266/519 (51%), Gaps = 35/519 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + A+ N + LGLDL GG H +E+D V+ L+ + RS L++E + S+R Sbjct: 110 PAWLKAVGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEQDFRSDLREEKLRYRSVR 169 Query: 93 Q--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 + +++ + K + + ++ +K +S+ Sbjct: 170 RVAGSDRMRVEMRTEEDKNAAESFLETRYPL---------NVYIDDSSNDKAFFATMSEQ 220 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 + ++ +AI+Q+ IIR RI+QIG++E +QR G+ RI++QLPG QD +R +++LG TA Sbjct: 221 KLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPGIQDTARAKEILGATA 280 Query: 211 KMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 + F +V N G + DG +++ ++ + G H+ GA + D Sbjct: 281 TLEFREVDENADISAAAQGRIPAGTEMIMSRDGYPVVLKKRIILEGSHITGAQSGADEYQ 340 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------LTAPV 307 V + GA+ R + V ++ + + Sbjct: 341 RPQVSITLDSKGGAKMNAFTKRAIGKRMATVFIEYKPSGKKDADGKALPPIKVEEVINVA 400 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 QA +I+G A L+ +LRAG+L + IVEER VG LG ++I G A Sbjct: 401 TIQARLDRSFRITGIDNPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIEAGMTA 460 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGL 426 + G +++FM+V Y +G+VA+ ++ N++L + ++SL+ ATLTLP IAGIVL +G+ Sbjct: 461 VALGFAFVLVFMLVYYKGFGMVANLALAANLVLIVGVMSLIPGATLTLPGIAGIVLTVGM 520 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 AVD+N+L+ ERIREE +S ++ G+ A+STIFD+NIT LIA ++LF G G + Sbjct: 521 AVDANVLIFERIREELADGRSPQQAIHFGYDSAFSTIFDANITTLIAAIILFAVGTGPIA 580 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GFA+T+ + IL SMFTAI RA++ + K++ + I Sbjct: 581 GFAVTLAIGILTSMFTAIVGTRAVINLFVGGKRIDKLSI 619 Score = 147 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 76/172 (44%), Gaps = 5/172 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716 GP + +E I G+ V + +L+++ + +K F + A L ++ +G +L G Sbjct: 446 GPSLGQENIEAGMTAVALGFAFVLVFMLVYYK-GFGMVANLALAANLVLIVGVMSLIPGA 504 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 L +A ++ +G +V+ V++++R+R+ + S + I + + Sbjct: 505 TLTLPGIAGIVLTVGMAVDANVLIFERIREELAD---GRSPQQAIHFGYDSAFSTIFDAN 561 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + I+ + + G I FA+ +A GI+ + ++I ++ + Sbjct: 562 ITTLIAAIILFAVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVINLFVGGKR 613 Score = 45.1 bits (104), Expect = 0.057, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 84/288 (29%), Gaps = 38/288 (13%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + IGLL A PN + ++V Sbjct: 4 KFPVWKYLLVLAVVAIGLLYASPNLYGRDPA-------------------------IQVS 38 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 + L D++ + LK + S +I + + + D + L Sbjct: 39 GAKGADVDL-SVVDKVNAILKTNNVTAKSTILEDGQILVRLKNVEEQLKAHDLLRDSLSD 97 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI----------DQVISHAIEQSMEIIR-Q 169 S +N+ P + + + + + + +EQ + R Sbjct: 98 DYISAINMAPAQPAWLKAVGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEQDFRSD 157 Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 ++ S + GS R+ +++ E+D + L T ++ + +N K F Sbjct: 158 LREEKLRYRSVRRVAGSDRMRVEMRTEEDKNAAESFLETRYPLNVYIDDSSNDKAFFATM 217 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 + + +++ I A + + I Sbjct: 218 SEQKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPG 265 >gi|332160721|ref|YP_004297298.1| preprotein translocase subunit SecD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664951|gb|ADZ41595.1| preprotein translocase subunit SecD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 495 Score = 212 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 160/507 (31%), Positives = 280/507 (55%), Gaps = 37/507 (7%) Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSF 102 + LGLDLRGG H ++EVD D + + D LRS L+++ I ++R++ N + + F Sbjct: 1 MKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRSDLREKNIPYATVRKLDNYGVEVRF 60 Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162 D + +++ S L+ + ++ + + V+S + + +A++Q Sbjct: 61 RDDKTRDDAI-----------SYLSPRHRDLVIGSNGSNTLKAVMSDERLREAREYAVQQ 109 Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222 ++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++LG TA + F V N Sbjct: 110 NITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNSNVD 169 Query: 223 KKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 G +G ++ +V ++G H+ +T++ D + V+IS D Sbjct: 170 ASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSSTDEYN-QAQVNISLDSA 228 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VINQAIPSGKAQI 319 G T+DNIGKP+A + + Q+ +I Sbjct: 229 GGSAMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINVATIQSRLGNSFRI 288 Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 +G A L+ +LRAG+L + IVEER +G LGS +I +G A + GL + +LFM Sbjct: 289 TGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNITQGLEACLWGLAVSILFM 348 Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERI 438 +V Y K+G++A ++ N++L + ++SLL ATLT+P IAGIVL + +AVD+N+L+NERI Sbjct: 349 VVYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERI 408 Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498 +EE + +++ ++ G+ A+S+I D+N+T LI ++L+ G G+++GFAIT + ++ Sbjct: 409 KEEYKNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVGTGSIKGFAITTAIGVVT 468 Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDI 525 SMFTAI RA++ + K++ + I Sbjct: 469 SMFTAIVGTRAIVNLLYGGKRINKLSI 495 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 320 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 378 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 379 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YKNGRTIQQAIHEGYKGAFSSIVD 435 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 436 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 492 >gi|159044407|ref|YP_001533201.1| preprotein translocase subunit SecF [Dinoroseobacter shibae DFL 12] gi|157912167|gb|ABV93600.1| protein-export membrane protein [Dinoroseobacter shibae DFL 12] Length = 320 Score = 212 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 173/308 (56%), Gaps = 7/308 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P F + +G S + + S+ L + GLN+GIDF GG + + + Sbjct: 1 MRLKLVPSETNWDFFKYVRLTLGASAVAMVASLVLWLSVGLNFGIDFLGGTTIRTESAQV 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGE------KNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD++ R+ +E L +GDIS ++R+Q Q G + +++ + Sbjct: 61 VDVAAYRAAVEPLGLGDISITEVFDPTFGPERNVAMLRIQAQEGQESVPPETILAIEEAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + P T + E VGPK+S ELI ++ V S +A+L YIW+RF+W F++GAI L+ Sbjct: 121 RTVDPEMTFPSVESVGPKVSGELILTAMLAVGASMVAILFYIWLRFEWQFSIGAIAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+L I F+L +AA+LT+IGYS+ND VV++DR+R+N+ Y RD+++ Sbjct: 181 DVVLTIGIFSLLQIRFDLATIAALLTIIGYSINDTVVIFDRLRENLIKYKKK-PLRDVMN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 S+NETL R+V TS +++L + GG VI F + +GI+V SS+F+A I+L Sbjct: 240 LSVNETLSRTVMTSGTTLLALLALLALGGDVIRGFVFAIFWGIIVGTYSSVFVAKNIVLL 299 Query: 823 IYDWRAKN 830 + R Sbjct: 300 LGVNREPK 307 >gi|91225155|ref|ZP_01260377.1| protein export protein SecD [Vibrio alginolyticus 12G01] gi|91190098|gb|EAS76369.1| protein export protein SecD [Vibrio alginolyticus 12G01] Length = 618 Score = 212 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 156/528 (29%), Positives = 275/528 (52%), Gaps = 45/528 (8%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + + RS L+ I Sbjct: 104 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE---- 142 ++R KE + + Q +K ++ ++ Sbjct: 164 RYRAIRPSG------------KEAVEVLLRNEEQLAEAKATLEKNHPDMIFVDSDSNGRY 211 Query: 143 -ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201 ++ ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R Sbjct: 212 ALTATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAR 271 Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256 +++LG TA + F +V G D DG +++ +V + G + Sbjct: 272 AKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD 331 Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV-------------- 302 ++ + +P V+IS D G + ++ NIGK +A V Sbjct: 332 -ASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILD 390 Query: 303 ----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G Sbjct: 391 KHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQ 450 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417 +I G A + G+V ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP I Sbjct: 451 QNIDMGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGI 510 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGIVL +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++L Sbjct: 511 AGIVLTVGMAVDANVLIFERIREEIRDGRSPQQAIHQGYANAFSTIADANITTLITAIIL 570 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 F G GAV+GFA+T+ + IL SMFTAI R ++ I K++ + I Sbjct: 571 FAVGTGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLIYGGKRVDKLSI 618 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I +A Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 466 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 467 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G + FA Sbjct: 526 LIFERIREEIRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 582 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I I+ IY + Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLIYGGKR 612 Score = 41.2 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVLFAIITAALYALPNIYGEDPAIQVTGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + + L KE + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTTALNKEQLSHKSIALEDGSILVRFNDTDTQISARDVISEAL 95 >gi|296161042|ref|ZP_06843853.1| protein-export membrane protein SecF [Burkholderia sp. Ch1-1] gi|295888741|gb|EFG68548.1| protein-export membrane protein SecF [Burkholderia sp. Ch1-1] Length = 316 Score = 212 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 153/302 (50%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS+L + ++ L GL+ ++F GG + V Sbjct: 1 MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLLHRGLHLSVEFTGGTVIEVQYPGTAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR L L D QNF ++ L+RL + G + AQ + V + P Sbjct: 61 LEPVRGTLGKLGYADAQVQNFGTSRDVLIRLPLKKGYTSAQQS--DQVMTALKADTPQVQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + ++IY+ RF+W +A+ + + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVAGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ ++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKLTVIEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M ++GG + FA+ + GI+ SS+F+AA + ++ R Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|192359607|ref|YP_001981945.1| protein-export membrane protein SecD [Cellvibrio japonicus Ueda107] gi|190685772|gb|ACE83450.1| protein-export membrane protein SecD [Cellvibrio japonicus Ueda107] Length = 625 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 152/521 (29%), Positives = 276/521 (52%), Gaps = 35/521 (6%) Query: 30 SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89 S + A+ + LGLDL GG H +LEVD V ++ +DE++ L+KE I Sbjct: 108 STTPGWLQALGAEPMKLGLDLAGGVHFLLEVDTASAVAKRQEISADEMKDKLRKEKIRYA 167 Query: 90 SMRQI-QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148 S+ N+I F + ++ + + + + LS Sbjct: 168 SVDTDRDNRIVGRFRSADTRDQAINSLR-------RDHPNQLFTRVDNGESNFSFVASLS 220 Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + + + S A+ Q++ +R R++++G+SE +Q G RI++QLPG QDP+ ++++G Sbjct: 221 ETAVRTIESEAVSQNLITLRNRVNELGVSEPIVQSQGRSRIIVQLPGIQDPAEAKRVIGK 280 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRD---SDGNQYLVEDKVEISGIHLNGATANFDPKT 265 TA + F ++ + + ++E ++ ++G H+ A ++FDP++ Sbjct: 281 TANLEFRLGASPDTPITNREEFPYKDEIMQMQRGNAVLERQIIVTGDHVANAQSSFDPES 340 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301 ++P V+I+ D +G + +TR+N+G+ + + + Sbjct: 341 NQPQVNITLDGLGGEKMHRITRNNVGRQMGILFIEYKNRTEITRNAQGEEVHRNIQYVEK 400 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + Q+ + +I+G A LA +LRAG+L ++ VEER +G LG+ +I Sbjct: 401 KVISLATIQSALGVQFRITGLDKPGEASELALLLRAGALAAPMHFVEERTIGPSLGAQNI 460 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 G A + G++L+V+FM++ Y +G+ A+ ++ +NV+L +A++S+ GATLTLP IAGIV Sbjct: 461 RNGVDATIWGMILVVIFMLIAYRVFGVFANLALTMNVLLMIAVMSMFGATLTLPGIAGIV 520 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IG+AVD+N+L++ RIREE + S ++ G+ RA+ TI D+N+T LI ++LF G Sbjct: 521 LSIGMAVDANVLIHSRIREELKGGASPQQAIYAGYERAWITILDANLTTLIVGIILFAIG 580 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G V+GFA+T+ + I SM+T+++ RA+ + +K Sbjct: 581 TGPVKGFAVTLMIGIATSMYTSVTCSRALANLVYGSRKNLK 621 Score = 157 bits (395), Expect = 9e-36, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 96/271 (35%), Gaps = 5/271 (1%) Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 + N G + + + + + + +Q+ Sbjct: 357 MHRITRNNVGRQMGILFIEYKNRTEITRNAQGEEVHRNIQYVEKKVISLATIQSALGVQF 416 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE-IVGPKISRELIRKGIVGVIISAIAMLI 682 + E+ + E +GP + + IR G+ I I ++I Sbjct: 417 RITGLDKPGEASELALLLRAGALAAPMHFVEERTIGPSLGAQNIRNGVDATIWGMILVVI 476 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 ++ I ++ F + A L +++ + ++FG L +A ++ IG +V+ V+++ Sbjct: 477 FMLIAYRV-FGVFANLALTMNVLLMIAVMSMFGATLTLPGIAGIVLSIGMAVDANVLIHS 535 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 R+R+ +K S + I + ++ I + + G + FA+ + Sbjct: 536 RIREELKG---GASPQQAIYAGYERAWITILDANLTTLIVGIILFAIGTGPVKGFAVTLM 592 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI + +S+ + + +Y R +I Sbjct: 593 IGIATSMYTSVTCSRALANLVYGSRKNLKKI 623 >gi|259909285|ref|YP_002649641.1| preprotein translocase subunit SecF [Erwinia pyrifoliae Ep1/96] gi|224964907|emb|CAX56430.1| Protein-export membrane protein [Erwinia pyrifoliae Ep1/96] gi|310766813|gb|ADP11763.1| preprotein translocase subunit SecF [Erwinia sp. Ejp617] Length = 322 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 S + FMR IS + I ++ ++ G N+G+DF GG + + + Sbjct: 5 HSVEQMNHGRKVYDFMRWDKLAFIISGILLIVAVAIIGVRGFNWGLDFTGGTVIEINLEQ 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL ++R +L+ + QNF ++ +VR+ G+ + +++ Sbjct: 65 PADLDMMRGSLQKAGFAEPQVQNFGSSRDVMVRMAPAEGN-AGEALGSKVLGIVNEATGQ 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+L YI RF+W ALG + L D+ T Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGGMALLSALIAILFYIGFRFEWRLALGTVLALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+NDK+VV DR+R+N + S+ D+ + S+ + Sbjct: 184 MGLLSLFQIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS+ VL + ++GG+++ F++ M GI + SSI++++ + L + R Sbjct: 243 TLSRTIITSVTTLAMVLILFIFGGALLQGFSLTMLIGITIGTISSIYVSSALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|212634516|ref|YP_002311041.1| preprotein translocase subunit SecF [Shewanella piezotolerans WP3] gi|212556000|gb|ACJ28454.1| SecD/SecF/SecDF export membrane protein:SecF protein [Shewanella piezotolerans WP3] Length = 315 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 170/299 (56%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ +I F+R +S + + S+ L T G+N+G+DF GG + + + P Sbjct: 1 MFQILNIKGSINFLRHAVPISILSAILVLGSLGSLATKGINWGLDFTGGTVVELEFSSPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R L + + QNF ++ L+RL + G + V + +T++ P Sbjct: 61 NLVAIREGLSTEETDGAVVQNFGSSRDILIRLPVKEGVKSDTQ--VAHVMEGVTQLDPTV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E VGP++ +EL +G + V+++ I +LIY+ RF+W ALG++T L D+ TLG Sbjct: 119 IQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLALGSVTALAHDVIITLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++F +EF+LT +A +LT++GYS+ND +VV+DR+R+N S D+++ SI +T+ Sbjct: 179 VFSIFQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKLRKG-SPEDVVNTSITQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T+ + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296 >gi|309786996|ref|ZP_07681608.1| protein-export membrane protein SecF [Shigella dysenteriae 1617] gi|308924574|gb|EFP70069.1| protein-export membrane protein SecF [Shigella dysenteriae 1617] Length = 304 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 85/286 (29%), Positives = 161/286 (56%), Gaps = 1/286 (0%) Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 MR +W GIS L I +I ++ G N+G+DF GG + + +P ++ V+R L+ Sbjct: 1 MRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAG 60 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 + QNF + +VR+ G++ Q +++K + ++ E VGP + Sbjct: 61 FEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVG 120 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 +L + G + ++ + +++L+Y+ RF+W A G + L D+ TLG +LF IE +LT Sbjct: 121 ADLAQTGAMALMTALLSILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTI 180 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 VA+++++IGYS+ND +VV DR+R+N + + ++ + S+ +TL R++ TS + Sbjct: 181 VASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSGTTLMV 239 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +L + ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 240 ILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 285 >gi|258544911|ref|ZP_05705145.1| protein-export membrane protein SecF [Cardiobacterium hominis ATCC 15826] gi|258519831|gb|EEV88690.1| protein-export membrane protein SecF [Cardiobacterium hominis ATCC 15826] Length = 306 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 162/291 (55%), Gaps = 4/291 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM G+ S + +I ++ L+ G N+G++F GG + + + D+ VRS Sbjct: 6 PYIPFMNYSRQGLWFSTVLTIAAVLLIIFRGFNFGLEFTGGATIEMQYAQAADIGHVRSV 65 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 +E + Q V++++ + + + + + P + + V Sbjct: 66 VEKIVPDAGVVQYGSSRD---VQIRFAEQEGANIDQTMSDMVSALQADAPDAKLTGQSKV 122 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 G + EL+ KG++ + ++ I M+IY+ +RF+W FALGA+ + D+ T G F+L G Sbjct: 123 GGQYKEELVSKGLLAIGLACIGMIIYLGLRFEWKFALGAVLAQLHDVIITAGVFSLMGWT 182 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+L +AA+L ++GYSVND VVVYDR+R+N + +++ +D+ID SIN+TL R++ TS Sbjct: 183 FDLNVLAALLAILGYSVNDTVVVYDRIRENFRKLP-AVTPKDVIDTSINQTLARTMVTSF 241 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +SV+ +A++GG+++ F+I M GI+ SSIF+A+ I+ + Sbjct: 242 TTLLSVIALALFGGTILAGFSIAMIIGIIFGTYSSIFVASAIVYRMGVKHE 292 >gi|134280256|ref|ZP_01766967.1| protein-export membrane protein SecD [Burkholderia pseudomallei 305] gi|134248263|gb|EBA48346.1| protein-export membrane protein SecD [Burkholderia pseudomallei 305] Length = 675 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLSALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608 Score = 47.4 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 36/356 (10%), Positives = 88/356 (24%), Gaps = 27/356 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + S K + LG D L Sbjct: 3 RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + + + + + I + D+ + + D + L Sbjct: 53 VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100 Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + L + + + +S + ++ + ++ M + Sbjct: 101 ADPNDPQYVVALNLQSASPRWLSALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 S++ Q + TA+ + + + S+ + Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + L + ++ V + V + Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 A P + + +A L K I + Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336 >gi|126438812|ref|YP_001060341.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 668] gi|126218305|gb|ABN81811.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 668] Length = 675 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLSALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQSVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608 Score = 47.4 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + S K + LG D L Sbjct: 3 RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + + + + + I + D+ + + D + L Sbjct: 53 VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLNA 101 >gi|5524706|gb|AAD44348.1| SecD protein [Enterobacter aerogenes] Length = 615 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 170/524 (32%), Positives = 288/524 (54%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+ +GI Sbjct: 104 NLAPATPRWLAAMYAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSELRDKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N +++ F DS ++ S L+ + ++ + + Sbjct: 164 PYSTVRKEDNYGLSIVFRDSAARDQAI-----------SYLSPRHRDLVISSQGTNALKA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++ Sbjct: 213 VMTDERLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKDTREGRPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -MDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILAKEEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGISNPTEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SL+ ATLT+P IAGIV Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALIANLVLIVGIMSLIPGATLTMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+N+T LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ I SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 77/177 (43%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + LI ++ +G +L Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALIANLVLIVGIMSLIP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYKGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI GI + ++I I+ +Y + Sbjct: 556 ANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKK 612 >gi|295675562|ref|YP_003604086.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1002] gi|295435405|gb|ADG14575.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1002] Length = 695 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 162/516 (31%), Positives = 269/516 (52%), Gaps = 22/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L A P ++ A+ + LGLDLRGG H +L+VD +N L Sbjct: 109 IVALNLQSASPTWMT---------ALRALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R+ L+ + + ++ + ++ AD + + + + + Sbjct: 160 ASDVRTLLRDNNVRDGGVNRVNQSVVVNLADQATADAALKLLGRGVSELQW-----TSQP 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G++E IQ+ G+ RI+++L Sbjct: 215 SPGADGGVQLVGTFTPAVQRAVQDAALKQNITTLHNRVNELGVAEPVIQQQGADRIVVEL 274 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L+ +V Sbjct: 275 PGVQDTAKAKDIIGRTATLEARLADPVNTHPNPNDPVPPGDELFTQGNQAPVLLRKQVIF 334 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL R + Sbjct: 335 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRDNIGKPMAMVLFERGKGEVLTV 393 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 394 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGFH 453 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 ++V G I +FMI Y +G+++ + +N++L +A+LS+L ATLTLP IA I L +G+ Sbjct: 454 SVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLVAVLSMLQATLTLPGIAAIALALGM 513 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+D+N+L+NER+REE R ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 514 AIDANVLINERVREELRHGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 573 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 GFAI + IL SMF+A+ R ++ F KK Sbjct: 574 GFAIVHCIGILTSMFSAVFFSRGLVNFWYGGKKKLK 609 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+KG V+ A+ +++ Sbjct: 407 TGQPTPQAAADLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFM 466 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + ++ L +AA+ +G +++ V++ +R+ Sbjct: 467 IAYY-MLFGVISMIGLSVNLLLLVAVLSMLQATLTLPGIAAIALALGMAIDANVLINERV 525 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + FAI G Sbjct: 526 REELR---HGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAIVHCIG 582 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ F Y + K + Sbjct: 583 ILTSMFSAVFFSRGLVNFWYGGKKKLKSL 611 Score = 40.8 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 17/156 (10%), Positives = 42/156 (26%), Gaps = 33/156 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + IGL+ LPN ++ ++V Sbjct: 3 RYPLWKYAVMLVALVIGLVYTLPNLYGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117 + + L I ++ ++ I + D+ + + D + Sbjct: 38 SGKATVRLDATTLASVEAALAGNQIKPTAVTFDNSQNNANIRVRLTDTDTQLRVKDLLQK 97 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153 L DP+ + + + + + + Sbjct: 98 SLN----SDPNDPQYIVALNLQSASPTWMTALRALP 129 >gi|86604805|ref|YP_473568.1| preprotein translocase subunit SecF [Synechococcus sp. JA-3-3Ab] gi|86553347|gb|ABC98305.1| protein-export membrane protein SecF [Synechococcus sp. JA-3-3Ab] Length = 331 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 84/316 (26%), Positives = 155/316 (49%), Gaps = 15/316 (4%) Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT------HGLNYGIDF 575 + + + +S+ + + + L G+DF Sbjct: 5 ELSPTDPAVGSRRSLDYRFDIVGRSRLWFSLSLAVLLVGLVSMAFSLASLGTPLRLGLDF 64 Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635 GG L + +PV +R L+ +G Q + + Sbjct: 65 AGGTLLDLRFEQPVTTDELRRALQEHDLGTSIIQLDTQTGQEALIRMPP-----LTEQER 119 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 V+ + + + + E VGP + R L+R G+V V+IS +++Y+ +RF+W +A+ Sbjct: 120 LAVEATLRQQIGPFERKLVETVGPTVGRLLLRSGLVAVLISFGLIVVYLALRFQWDYAVF 179 Query: 696 AITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 AI L+ D+ T G FAL G +E + + A+LT+IG+SVND VV+YDR+R+N++L Sbjct: 180 AIVALLHDVVLTTGLFALLGLTVGMEVDSLFLVALLTIIGFSVNDTVVIYDRIRENLRLV 239 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811 + +SF ++++ S+N+T RS+ T++ + ++ +A++GG+ + FAI + G + S Sbjct: 240 SRKVSFAEVVNLSLNQTFARSLNTTLTTMLPLVAIAIFGGATLKGFAIALLIGFSLGVYS 299 Query: 812 SIFIAAPILLFIYDWR 827 SIFIA+P+L++ R Sbjct: 300 SIFIASPLLVWWRQRR 315 >gi|254180718|ref|ZP_04887316.1| protein-export membrane protein SecD [Burkholderia pseudomallei 1655] gi|184211257|gb|EDU08300.1| protein-export membrane protein SecD [Burkholderia pseudomallei 1655] Length = 674 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLSALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608 Score = 47.4 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 36/356 (10%), Positives = 88/356 (24%), Gaps = 27/356 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + S K + LG D L Sbjct: 3 RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + + + + + I + D+ + + D + L Sbjct: 53 VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100 Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + L + + + +S + ++ + ++ M + Sbjct: 101 ADPNDPQYVVALNLQSASPRWLSALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 S++ Q + TA+ + + + S+ + Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + L + ++ V + V + Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 A P + + +A L K I + Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336 >gi|318604598|emb|CBY26096.1| protein-export membrane protein SecD [Yersinia enterocolitica subsp. palearctica Y11] Length = 495 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 160/507 (31%), Positives = 280/507 (55%), Gaps = 37/507 (7%) Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSF 102 + LGLDLRGG H ++EVD D + + D LRS L+++ I ++R++ N + + F Sbjct: 1 MKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRSDLREKNIPYTTVRKLDNYGVEVRF 60 Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162 D + +++ S L+ + ++ + + V+S + + +A++Q Sbjct: 61 RDDKTRDDAI-----------SYLSPRHRDLVIGSNGSNTLKAVMSDERLREAREYAVQQ 109 Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222 ++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++LG TA + F V N Sbjct: 110 NITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNSNVD 169 Query: 223 KKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 G +G ++ +V ++G H+ +T++ D + V+IS D Sbjct: 170 ASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSSTDEYN-QAQVNISLDSA 228 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VINQAIPSGKAQI 319 G T+DNIGKP+A + + Q+ +I Sbjct: 229 GGSAMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINVATIQSRLGNSFRI 288 Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 +G A L+ +LRAG+L + IVEER +G LGS +I +G A + GL + +LFM Sbjct: 289 TGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNITQGLEACLWGLAVSILFM 348 Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERI 438 +V Y K+G++A ++ N++L + ++SLL ATLT+P IAGIVL + +AVD+N+L+NERI Sbjct: 349 VVYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERI 408 Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498 +EE + +++ ++ G+ A+S+I D+N+T LI ++L+ G G+++GFAIT + ++ Sbjct: 409 KEEYKNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVGTGSIKGFAITTAIGVVT 468 Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDI 525 SMFTAI RA++ + K++ + I Sbjct: 469 SMFTAIVGTRAIVNLLYGGKRINKLSI 495 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + ++ F + A T L+ ++ +G +L Sbjct: 320 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 378 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ Y + + I + V Sbjct: 379 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YKNGRTIQQAIHEGYKGAFSSIVD 435 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+V + ++I I+ +Y + N Sbjct: 436 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 492 >gi|323524787|ref|YP_004226940.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1001] gi|323381789|gb|ADX53880.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1001] Length = 686 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 164/517 (31%), Positives = 271/517 (52%), Gaps = 24/517 (4%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + LGLDLRGG H +L+VD +N L Sbjct: 108 FVVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDS 158 Query: 73 YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 + + R+ L+ I + ++ + ++FAD + A +++ + + P Sbjct: 159 DASDARTLLRDNNIRDGGVNRVNQTVVINFADQATADAAAKQLSRSIGELQWASQNGPDG 218 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + T + V A++Q++ + R++++G++E IQ+ G+ RI+++ Sbjct: 219 SVQLVGT-------FTPTVQKAVQDAALKQNITTLHNRVNELGVAEPVIQQQGADRIVVE 271 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248 LPG QD ++ + ++G TA + P N G + L+ ++ Sbjct: 272 LPGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQII 331 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 332 FTGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRSVSRDNIGKPMAMVLFEKGKGEVLT 390 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I KG Sbjct: 391 VATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGF 450 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 ++V G I +FMI Y +G+++ + +N++L +A+LS+L ATLTLP IA I L +G Sbjct: 451 HSVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALG 510 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NER+REE R ++ G++ A++TI DSN+T LIA V L FG G V Sbjct: 511 MAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPV 570 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 RGFAI + IL SMF+A+ R ++ KK Sbjct: 571 RGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 85/209 (40%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+KG V+ A+ +++ Sbjct: 405 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFM 464 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + ++ L +AA+ +G +++ V++ +R+ Sbjct: 465 IAYY-MLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERV 523 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ + + +G + FAI G Sbjct: 524 REELR---NGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPVRGFAIVHCIG 580 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + I+ Y + K + Sbjct: 581 ILTSMFSAVFFSRGIVNLWYGGKKKLKSL 609 Score = 39.3 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 21/119 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + IGL+ LPN ++ + + + ++ LD L Sbjct: 3 RYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQ----VSSGKATVKLD-----STTLSA- 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + +K E + + I + D+ + + D + L Sbjct: 53 VETALAA----------NQIKPEDVTFDNSST-NANIRVRLLDTDTQLRVKDLLQKSLN 100 >gi|167031894|ref|YP_001667125.1| preprotein translocase subunit SecF [Pseudomonas putida GB-1] gi|166858382|gb|ABY96789.1| protein-export membrane protein SecF [Pseudomonas putida GB-1] Length = 302 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 159/287 (55%), Gaps = 5/287 (1%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R I++L ++ ++ + GLN+G+DF GG + + RP DL VR+ Sbjct: 1 MKTINFMGVRNVAFAITVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + Q+F + LVR+ + +T++ E Sbjct: 61 ELVDSGFHEAVVQSFGATTDLLVRMPGDDPQLGN----KVAAALQKAGGDNPATLKRVEF 116 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VGP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ TLG + F I Sbjct: 117 VGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQI 176 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ S + I+ S +TL R++ TS Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINVSTTQTLLRTIATS 235 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ +++ + +GG + F++ + G++ SSI+IA +L+++ Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282 Score = 47.0 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 105/259 (40%), Gaps = 5/259 (1%) Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320 F + F ++ A ++D A V + + Sbjct: 26 FSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRAELVDSGFHEAVVQSFGATTDLLVRM 85 Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380 + +AA L+ + VG +G + +G ++ L I++++ Sbjct: 86 PGDDPQLGNKVAAALQKAGGDNPATLKRVEFVGPQVGEELRDQGGMGMLLALGGILIYLA 145 Query: 381 VLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439 + K+ + A S+ +V++TL +LS T L +A ++ IG +++ I+V +R+R Sbjct: 146 FRFQWKFAVGAIISLIHDVVVTLGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVR 205 Query: 440 EENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 E R + ++ S TI S T L +LFF GG + GF++ + + + Sbjct: 206 ENFRVMRKASLIENINVSTTQTLLRTIATSVSTLLAIAALLFF-GGDNLFGFSLALFIGV 264 Query: 497 LISMFTAISIVRAMMIFII 515 + +++I I ++I++ Sbjct: 265 MAGTYSSIYIANVVLIWLN 283 >gi|209695857|ref|YP_002263787.1| preprotein translocase subunit SecD [Aliivibrio salmonicida LFI1238] gi|208009810|emb|CAQ80117.1| protein-export membrane protein SecD [Aliivibrio salmonicida LFI1238] Length = 618 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 151/524 (28%), Positives = 276/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D ++ + + R+ L++ I Sbjct: 104 NLAALTPDWLTSIGAKPMKLGLDLRGGVHFLMEVDMDAAMSKLVGQQEESFRTDLREAKI 163 Query: 87 GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + ++ E + ++ + D + + ++ Sbjct: 164 RYRAIRSSGKESVEVVLRNAEQLEEAKNVLSDAHR--------DMTFVDSESNGQFKLIA 215 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + ++ ++A+EQ++ IIR R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 216 SFTDQRLQEIRNYAVEQNITIIRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275 Query: 206 LGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G D +G +++ ++ + G + ++ Sbjct: 276 LGATATLEFREVDDKADLSAAANGRAPAGSEIKEDRNGRPVVLKKRIILGGASITD-ASS 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + +R NIGK +A V Sbjct: 335 SADEYGRPQVNISLDSEGGSKMTAFSRKNIGKLMATVFTEYKDSGRRTPEGRVILAKTEE 394 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 VINQATIQSALGRSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A + G+V ++LF ++ Y +GLVA+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 455 MGVQACIWGMVAVMLFTLIYYRGFGLVANLALAANLVLIIGVMSMIPGATMTLPGIAGIV 514 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 TGAIKGFAVTLSIGILTSMFTAIVGTRCVINLVYGGKRVDKLSI 618 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 88/210 (41%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G + + ++ +I +GP + ++ I G+ I +A Sbjct: 407 RSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGVQACIWGMVA 466 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ I ++ F L A L ++ +G ++ G L +A ++ +G +V+ V Sbjct: 467 VMLFTLIYYR-GFGLVANLALAANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ + + I + ++ I+ + + G I FA Sbjct: 526 LIFERIREELRD---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 582 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I ++ +Y + Sbjct: 583 VTLSIGILTSMFTAIVGTRCVINLVYGGKR 612 Score = 43.1 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + I L ALPN + + + RG Sbjct: 4 RFPLWKYLMVVSVLLIAALYALPNLYGEDPAVQITGS------------RG--------- 42 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + LK I S+ + + F D+ + + D ++ L Sbjct: 43 -----AEVQTSTLDVVAENLKNNNIAYKSIAFENGSVLVRFKDTDSQISARDIISQSL 95 >gi|313111950|ref|ZP_07797739.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa 39016] gi|310884241|gb|EFQ42835.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa 39016] Length = 1046 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L ++++P+ P + Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + + + IT++F + +V LQ Sbjct: 54 AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + S I+ D + ++ Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 DP++L T +S N G Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++G Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + A L + S Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 LS +A + + ++ + + +G + V Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++S++ + ++ F V G + M+K Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 +++ + Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665 Score = 79.3 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q I+ Q + + +++ + + + + Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S R+ KS+ Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M LPMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + + G + ++G + + PG S K Sbjct: 790 VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + + L Sbjct: 850 LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L ++ G+ ++ +LT IG S + +++ + ++ L+ + Sbjct: 907 GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKDIVEAAI 963 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814 ++ L V TS+A + V+P+A+ G + + G+V A +IF Sbjct: 964 EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018 >gi|303256882|ref|ZP_07342896.1| protein-export membrane protein SecF [Burkholderiales bacterium 1_1_47] gi|330998869|ref|ZP_08322596.1| export membrane protein SecF [Parasutterella excrementihominis YIT 11859] gi|302860373|gb|EFL83450.1| protein-export membrane protein SecF [Burkholderiales bacterium 1_1_47] gi|329576083|gb|EGG57602.1| export membrane protein SecF [Parasutterella excrementihominis YIT 11859] Length = 311 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 93/302 (30%), Positives = 160/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM+ IS + +I LL GL + I+F GG+ + V V Sbjct: 1 MELFRIHKTIPFMKYSKILNAISFISFFIAIGLLVVRGLAFSIEFTGGLVMEVNYPDAVP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R +LE G++ NF ++ +RL + + AQ E V K I E P + Sbjct: 61 VQELRVDLEKATGGEVQVVNFGTARDAQIRLPLKGNKTSAQMS--EEVMKVIHEKAPEAQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL G+ +++ + ++IY+ RF+W FA+ AI + D+ LG Sbjct: 119 LRRTEFVGPQVGEELATDGLTALLLVIVGIMIYLAFRFEWKFAVAAIIANMHDVFLVLGV 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+LF EF+L +AAVL ++GYSVN+ V+++DR R+ + + +++D +I +T+ Sbjct: 179 FSLFQWEFSLPVLAAVLAVLGYSVNESVIIFDRCRECFRKIRKG-TPVEIVDTAITQTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R+V T + + L M +GG + FA+ + GI++ SS+F++A I L++ R Sbjct: 238 RTVITHSSTLMVTLSMFFFGGPALHYFALALTIGILLGVYSSVFVSAAIALYLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|171464098|ref|YP_001798211.1| protein-export membrane protein SecF [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193636|gb|ACB44597.1| protein-export membrane protein SecF [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 324 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 159/305 (52%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ L+ +GL+ I+F GG + V + Sbjct: 1 MEFFRIKKDIPFMRHALVLNAISLVTFLAAVFFLWHNGLHLSIEFTGGTVMEVSYPQTAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L +R+ +E L D QNF + ++RL Q + V + + Sbjct: 61 LDSIRAKVEKLGYADTQIQNFGSSHDVMIRLPLQKDAEGKLISSADQSTAVLQVLDPATT 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G+ +I I ++IY+ RF+W FA+ I + D+ Sbjct: 121 GVKLQRVEFVGPQVGQELAIDGLKALIFVIIGIVIYLSFRFEWKFAVAGIIANLHDVIII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+N + Y ++ R++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRENFRKYRK-MNTREIIDNAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R+V T + + VL M ++GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTVITHGSTEMMVLAMLIFGGPTLFYFALALTIGILFGIYSSVFVAAALAMWLGVTR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|300721776|ref|YP_003711054.1| preprotein translocase auxillary membrane protein [Xenorhabdus nematophila ATCC 19061] gi|297628271|emb|CBJ88832.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Xenorhabdus nematophila ATCC 19061] Length = 604 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 162/524 (30%), Positives = 281/524 (53%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + K + LGLDLRGG H ++EVD + + + D LR L+ +GI Sbjct: 93 NLAPATPAWLSKVGAEPMKLGLDLRGGVHFLMEVDMETALGKLQEQNIDSLRVELRDQGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+I N + + F DS + + + + + + Sbjct: 153 AYSTIRKIDNYGVEVRFRDSDARSKAENYLEPRHR-----------DLVFSAGANNTLKA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + S+A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMSDERLREARSYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + + G DGN ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNIDQNAALAGRIPADSELQYTRDGNPAVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 D + V+IS D G T+DN+ KP+A + Sbjct: 322 TDENGYPQ-VNISLDSAGGTAMSNFTKDNLQKPMATLFVEYKDSGKKDANGRSLLVKKEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIATIQSRLGNNFRITGISNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIE 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GLV +LFM++ Y K+GL+A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 441 QGLEACLWGLVASILFMVIYYRKFGLIASSALLANLVLIVGIMSLLPGATLTMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE R +++ ++ G+ A+S+I D+N+T LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELRNGRTIQQAIHEGYKGAFSSIIDANLTTLITAIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 561 TGSIKGFAITTSIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 80/177 (45%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + +A ++++ I ++ F L A + L+ ++ +G +L Sbjct: 429 TIGPTLGLQNIEQGLEACLWGLVASILFMVIYYR-KFGLIASSALLANLVLIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ ++ + + I + + Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTIQQAIHEGYKGAFSSIID 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI + G+ + ++I I+ +Y + N Sbjct: 545 ANLTTLITAIILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|311105894|ref|YP_003978747.1| multidrug resistance protein [Achromobacter xylosoxidans A8] gi|310760583|gb|ADP16032.1| multidrug resistance protein MexB 1 [Achromobacter xylosoxidans A8] Length = 1060 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 76/687 (11%), Positives = 186/687 (27%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L L + + ++P+ P G + Sbjct: 8 RPVFAWVIAIVLMMAGALSIL-----KLPVSQYPNIAPPAI---------GIAVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L + ITL+F+ + +V L Sbjct: 54 AQTVQDTVVQVIEQQMNGLDGLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + ++++ + + + D I ++ Sbjct: 114 AQPLLPQEVQQQGIRVTKATKNFLIVAGFVSTDGSMTKDDLADYVASYVQDPISRTQGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L TT + N G Sbjct: 174 DFQLFGSQ-YAMRIWLDPAKLVNYGLTTVDVVTAIKEQNVQVSSGQLGGLPSVRGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + K + + I Sbjct: 233 TIIGPSRL-------------EKAEDFGRILLKVNADGSQVRLGDVSTIELGGQTYAIDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L+ P + S Sbjct: 280 FYNGKPASGLAVKLAPGANALDTAQAVRDTINNLKPYFPPGMDVVYPYDTTPFVSLSIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VFKTLIEAIILVFLVMYLFLQNFRATIIPTLAVPVVLLGTFGVLATFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + S+ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPKQATRKSMSQITGALIGIAMVLAAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ S+++S+ AI A+ + + + + Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVIVAIVFTPALCATLLKPIPKGHHGAKKGFFGWFNRSF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + +A R++ V L + +G + + Sbjct: 520 ERSSNGYANTVARGLNRSKRLMVIYLALVLAMGWMFTRIPTAFLPDEDQGILFAQIQTPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ ++ ++ + F V G + + ++ Sbjct: 580 GATAEATKAVIDDATKYLLTEEKDAVTSVFAVNGFNFGGRGQNASILFIKLRDWEERGDA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 R+ R+G + V+ Sbjct: 640 RLKAGAVAQRANAHFRKTERRGQLFVV 666 Score = 78.6 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 76/201 (37%), Gaps = 7/201 (3%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 V + + P + P +S + +I + I + + +++ Sbjct: 301 DTAQAVRDTINNLKPYFPPGMDVVYPYDTTPFVSLSIHE-VFKTLIEAIILVFLVMYLFL 359 Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + + + + + + T G A FG N + ++ IG V+D +VV + + Sbjct: 360 QNFRATIIPTLAVPVVLLGTFGVLATFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--E 417 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804 + +S + KS+++ G + +M +PMA +GGS F+I + Sbjct: 418 RVMAEEGLSPKQATRKSMSQITGALIGIAMVLAAVFIPMAFFGGSTGVIYRQFSITIVSS 477 Query: 805 IVVAASSSIFIAAPILLFIYD 825 +V++ +I + + Sbjct: 478 MVLSVIVAIVFTPALCATLLK 498 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 80/260 (30%), Gaps = 13/260 (5%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + A V S S ++ N N + Sbjct: 779 RMLPEDLNKWYVRNKAGDMVPFSAFAKATWSYGPQKLNRYNGVPSYNIQGQAAPGYSSGA 838 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A + + K + T + E + + S I + + + ++ Sbjct: 839 AMAEMENLASKLPVGVGFEWTGLSFEERLSGAQAP----ALYAI--SLIVVFLCLAALYE 892 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + + L I L + G+ ++ +LT IG + + +++ + ++ Sbjct: 893 SWTIPSAVMLVVPLGIIGALLATMMRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKE-- 950 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 Y S + + + L + TS+A + V P+A+ G + + G+ Sbjct: 951 -HYEQGASLTESAIHAARQRLRPILMTSLAFILGVTPLAISSGAGSGSQNAIGTGVIGGM 1009 Query: 806 VVAASSSIFIAAPILLFIYD 825 + +IF + + Sbjct: 1010 LTGTFLAIFFVPAFFVIMLR 1029 >gi|298530968|ref|ZP_07018369.1| protein-export membrane protein SecD [Desulfonatronospira thiodismutans ASO3-1] gi|298508991|gb|EFI32896.1| protein-export membrane protein SecD [Desulfonatronospira thiodismutans ASO3-1] Length = 534 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 178/539 (33%), Positives = 289/539 (53%), Gaps = 26/539 (4%) Query: 1 MR-NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+ N W + + ++ + L LP + R +P +++LGLDL+GG HL+L Sbjct: 1 MKANLRWKIPIILLVLLVSLAFFLPT-FSKVKDSRIGEYLPDRQLNLGLDLQGGIHLLLN 59 Query: 60 VDEDDFVNGFLQMYSDELR--SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 V+ + + L ++R + + + S+ K+ + S + + ++ Sbjct: 60 VEVEKAMERSLSQAGLDIRDDARENQIHVLRPSV-NEDTKLEFTLLRSEQQGELEQLLSD 118 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + + + + + D++ ++Q+++ IR RIDQ G++ Sbjct: 119 RHPNLQIVDTEALEDDRIR------YIMDYVPELKDEMHEMTMDQAVKTIRNRIDQFGLA 172 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236 E I++ +R+ +QLPG DP R +++G TA + F V + + S Sbjct: 173 EPDIRKQEENRVQVQLPGMDDPDRAIEIVGQTAHLEFKLVDEDADVRRAEEDGVVPPGSR 232 Query: 237 -------------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283 +++D +SG H+ A FD + P V ++FD GA F Sbjct: 233 LYYQVTEGPDDTESKQPIVLKDDTLMSGEHITNAHTAFDERN-NPYVSLTFDSRGASIFE 291 Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343 +T +NI + LA+VLDG V + PVI + I G+A I+G FT++ A L+ +LRAG+LP Sbjct: 292 RITGENIQERLAIVLDGEVYSTPVIQERISGGRASITGQFTVQEAHDLSVVLRAGALPAP 351 Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403 ++I+EER VG LG +SI +G + + G L+V F+I YG G+VA+ + LN+IL LA Sbjct: 352 VHIMEERTVGPSLGQESIERGVNSALIGGALVVAFIIFYYGFAGVVANTVLALNIILILA 411 Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463 L+ GATLTLP IAGI+L IG+AVD+N+L+ ERIREE R+ S ++ G++RA TI Sbjct: 412 GLAGFGATLTLPGIAGIILTIGIAVDANVLIFERIREELRRGLSPRAAVQEGYNRATLTI 471 Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 D+N+T +IA ++L+ FG G VRGFA+T+ L IL SMFTAI + R + I +K ++ Sbjct: 472 LDANVTTVIAAMILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRVIFDIWIASRKPQT 530 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 105/247 (42%), Gaps = 5/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++ L + G++ E+ R +V + L +V + Sbjct: 291 ERITGENIQERLAIVLDGEVYSTPVIQERISGGRASITGQFTVQEAHDLSVVLRAGALPA 350 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 P+ ++ + GP + +E I +G+ +I ++ +I + + + A T L L+I Sbjct: 351 PVHIMEERTV-GPSLGQESIERGVNSALIGGALVVAFIIFYYGF-AGVVANTVLALNIIL 408 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 L A FG L +A ++ IG +V+ V++++R+R+ ++ +S R + + N Sbjct: 409 ILAGLAGFGATLTLPGIAGIILTIGIAVDANVLIFERIREELR---RGLSPRAAVQEGYN 465 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + ++ I+ + + +G + FA+ + GI+ + ++IF++ I Sbjct: 466 RATLTILDANVTTVIAAMILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRVIFDIWIAS 525 Query: 827 RAKNARI 833 R + Sbjct: 526 RKPQTAL 532 >gi|254228675|ref|ZP_04922099.1| protein-export membrane protein SecD [Vibrio sp. Ex25] gi|151938854|gb|EDN57688.1| protein-export membrane protein SecD [Vibrio sp. Ex25] gi|324039568|dbj|BAJ78589.1| protein-export membrane protein D-1 [Vibrio alginolyticus] Length = 618 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 156/528 (29%), Positives = 276/528 (52%), Gaps = 45/528 (8%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + + RS L++ I Sbjct: 104 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE---- 142 ++R KE + + Q +K ++ ++ Sbjct: 164 RYRAIRPSG------------KEAVEVLLRNEEQLAEAKAMLEKNHPDMLFVESDSNGRY 211 Query: 143 -ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201 ++ ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R Sbjct: 212 ALTATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAR 271 Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256 +++LG TA + F +V G D DG +++ +V + G + Sbjct: 272 AKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD 331 Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV-------------- 302 ++ + +P V+IS D G + ++ NIGK +A V Sbjct: 332 -ASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILD 390 Query: 303 ----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G Sbjct: 391 KHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQ 450 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417 +I G A + G+V ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP I Sbjct: 451 QNIDMGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGI 510 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGIVL +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++L Sbjct: 511 AGIVLTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIIL 570 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 F G GAV+GFA+T+ + IL SMFTAI R ++ I K++ + I Sbjct: 571 FAVGTGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLIYGGKRVDKLSI 618 Score = 144 bits (361), Expect = 7e-32, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I +A Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 466 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 467 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G + FA Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 582 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I I+ IY + Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLIYGGKR 612 Score = 40.4 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVFFAIITAALYALPNIYGEDPAIQVTGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + + L KE + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTTALDKEQLSHKSIALENGSILVRFNDTDTQISARDVISEAL 95 >gi|269797662|ref|YP_003311562.1| protein-export membrane protein SecF [Veillonella parvula DSM 2008] gi|282850107|ref|ZP_06259489.1| protein-export membrane protein SecF [Veillonella parvula ATCC 17745] gi|269094291|gb|ACZ24282.1| protein-export membrane protein SecF [Veillonella parvula DSM 2008] gi|282580296|gb|EFB85697.1| protein-export membrane protein SecF [Veillonella parvula ATCC 17745] Length = 297 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 80/289 (27%), Positives = 147/289 (50%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 + W IS I S+ +FT G N+GID+ GG + V+ ++PV++S VR L+ + Sbjct: 7 KHHRWWFAISSTLVIISLISIFTKGFNFGIDYTGGTIVEVVFDQPVEVSQVRDVLKEYNL 66 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663 + Q ++ V +T+ + +T++ E VG I Sbjct: 67 ENAQIQLSGDTTGDTAGEDVMIRTRNLESSESAAVVDSLTKSIGNNTVKRIETVGAVIGS 126 Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723 E+ ++ ++I+ A+ +YI RF++ A+ A+ + D+ LG F+ F +E + + + Sbjct: 127 EVTEHALLNLVIAFAALALYISYRFEYKVAISALVAIFHDLIMVLGVFSYFQLEIDASFL 186 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 AA+LT++GYS+N+ VV++DR+R+N + S +F DL + SI +++ RS YT + Sbjct: 187 AAILTVVGYSMNESVVIFDRVRENTHTHKRSDTFADLANASITQSIHRSFYTLATVMFAC 246 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + ++GG +FA+ M G A SSI +A + + + R Sbjct: 247 VSLYLFGGDTTKNFALCMIIGFASGAYSSICVATSLWVMWKSRNKNDVR 295 >gi|325916538|ref|ZP_08178804.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937] gi|325537211|gb|EGD08941.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937] Length = 693 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 74/683 (10%), Positives = 183/683 (26%), Gaps = 45/683 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L + ++PS P + + + Sbjct: 8 RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPA-------------VAITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + +K + S ITL+F + + +V Sbjct: 50 PGASAQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFDNGTDPDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ + T + + + + + S + + I Sbjct: 110 KLSLATPLLPQEVQQQGVTVTKSATNFVNVLAFTSEDGSMNDSDLSDYVAANVQETISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP +L T + N G + Sbjct: 170 EGVGDTTLFGSQ-YAMRIWLDPDKLSNFNLTPVDVRTAIQAQNAQVSAGQLGALPAVANQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + + + Sbjct: 229 QLNATITAQTRL-------------KTAEQFENILLRTQADGSQVRLRDVARVELGSESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T+ P Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEQFFPPGMKVQKPYDTTPFVRI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +L+ G T+ ++ Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 +VL IGL VD I+V E I+ + + G + + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPV 455 Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529 F G R A+ + ++ IS F A+++ M + + N Sbjct: 456 GFLEGNTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRSHSEAKPNRFHLWFNGRM 515 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + +++ R W + +L ++ + L + + + ++ + P Sbjct: 516 QAVSGAYGRSLERHVHRTWIFALLMLLALGASAWLMSRIPSELAPAEDRGNFQIMIDGPE 575 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + + Q+ DI ++ + PG + + + Sbjct: 576 GAGFDYTVGQMHQVEDILRPYVGPDQPIVRANPRVPGGFGSSEEMHTGRVSVFLQDWEKR 635 Query: 650 TIQNTEIVGPKISRELIRKGIVG 672 T TE+ + + G+ Sbjct: 636 TRPTTEVADELQQKLNVLSGVRA 658 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 27/212 (12%), Positives = 68/212 (32%), Gaps = 4/212 (1%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + L +++ R ++ ++ + Sbjct: 258 SQVRLRDVARVELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEQFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P R I + + ++ + + + + +++ + + L + + + Sbjct: 318 PPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + A++ IG V+D +VV + + + + Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENI---QRRIDLGEPPLVAAKRGT 434 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797 + + T+ LP+ G+ F Sbjct: 435 GQVAFAVIATTAVLVAVFLPVGFLEGNTGRLF 466 >gi|218889168|ref|YP_002438032.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexB [Pseudomonas aeruginosa LESB58] gi|218769391|emb|CAW25151.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexB [Pseudomonas aeruginosa LESB58] Length = 1046 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L ++++P+ P + Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + + + IT++F + +V LQ Sbjct: 54 AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + S I+ D + ++ Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 DP++L T +S N G Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++G Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + A L + S Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 LS +A + + ++ + + +G + V Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++S++ + ++ F V G + M+K Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 +++ + Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665 Score = 79.3 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q I+ Q + + +++ + + + + Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S R+ KS+ Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M LPMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + + G + ++G + + PG S K Sbjct: 790 VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + + L Sbjct: 850 LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L ++ G+ ++ +LT IG S + +++ + ++ L+ + Sbjct: 907 GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814 ++ L V TS+A + V+P+A+ G + + G+V A +IF Sbjct: 964 EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018 >gi|238019739|ref|ZP_04600165.1| hypothetical protein VEIDISOL_01614 [Veillonella dispar ATCC 17748] gi|237863780|gb|EEP65070.1| hypothetical protein VEIDISOL_01614 [Veillonella dispar ATCC 17748] Length = 298 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 80/289 (27%), Positives = 147/289 (50%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 + W IS I S+ +FT G N+GID+ GG + V+ ++PV++S VR L+ + Sbjct: 7 KHHRWWFAISSTLVIISLISIFTKGFNFGIDYTGGTIVEVVFDQPVEVSQVRDVLKEYNL 66 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663 + Q + V + +T+ + +T++ E VG I Sbjct: 67 ENAQIQLSGDTTGDTAGEDVMIRTRNLEPSESAAVIESLTKSIGNNTVKRIETVGAVIGS 126 Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723 E+ ++ ++I+ A+ +YI RF++ A+ A+ + D+ LG F+ F +E + + + Sbjct: 127 EVTEHALLNLVIAFAALALYISYRFEYKVAISALVAIFHDLIMVLGVFSYFQLEIDASFL 186 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 AA+LT++GYS+N+ VV++DR+R+N + S +F DL + SI +++ RS YT + Sbjct: 187 AAILTVVGYSMNESVVIFDRVRENTHTHKRSDTFADLANASITQSIHRSFYTLATVMFAC 246 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + ++GG +FA+ M G A SSI +A + + + R Sbjct: 247 VSLYLFGGDTTKNFALCMIIGFASGAYSSICVATSLWVMWKSRNKNDIR 295 >gi|188534661|ref|YP_001908458.1| preprotein translocase subunit SecF [Erwinia tasmaniensis Et1/99] gi|188029703|emb|CAO97582.1| Protein-export membrane protein [Erwinia tasmaniensis Et1/99] Length = 322 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 88/301 (29%), Positives = 165/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 S + I FMR IS + I ++ ++ G N+G+DF GG + + + Sbjct: 5 HSVEQMNHGRKVIDFMRWDKLAFIISGILLIVAVAIIGVRGFNWGLDFTGGTVIEINLEQ 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL ++R +L+ + QNF ++ LVR+ G+ + +++ Sbjct: 65 PADLDMMRESLQKAGFAEPQVQNFGSSRDVLVRMPPAEGN-AGEALGSKVLGVINEATGQ 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+L YI RF+W ALG + L D+ T Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGGMALLSALIAILFYIGFRFEWRLALGTVLALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G ++F IE +LT +A+++++IGYS+NDK+VV DR+R+N + S+ D+ + S+ + Sbjct: 184 MGLLSMFKIEIDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNISLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS+ V+ + ++GG+++ F++ M GI + SSI++++ + L + R Sbjct: 243 TLSRTIITSVTTLAMVVILFIFGGALLKGFSLTMLIGITIGTISSIYVSSALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|120613274|ref|YP_972952.1| preprotein translocase subunit SecF [Acidovorax citrulli AAC00-1] gi|120591738|gb|ABM35178.1| protein translocase subunit secF [Acidovorax citrulli AAC00-1] Length = 317 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS + ++ L T GL+ ++F GG + V + D Sbjct: 1 MEFFRIKKDIPFMKHALVFNAISFITFALAVFFLVTRGLHLSVEFTGGTVMEVAYTQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 VR + SL D+ QNF ++ ++RL Q G + AQ E V + P T Sbjct: 61 TGKVREAVSSLGYSDVIVQNFGTSRDVMIRLPVQKGATSAQQS--EQVMGALKAQDPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL+ G++ + + + +++Y+ RF+W F + AI + D+ LGF Sbjct: 119 LRRTEFVGPQVGEELVHGGLMALAMVVVGIVVYLAFRFEWKFGVAAIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +A VL ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I T+ Sbjct: 179 FAFFQWEFSLAVLAGVLAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M +GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|238760780|ref|ZP_04621891.1| Protein-export membrane protein secF [Yersinia aldovae ATCC 35236] gi|238701003|gb|EEP93609.1| Protein-export membrane protein secF [Yersinia aldovae ATCC 35236] Length = 322 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 91/301 (30%), Positives = 167/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + G+S+L I SI ++ T G N+G+DF GG + V ++ Sbjct: 5 YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLIASIAVMSTKGFNWGLDFTGGTVIEVSLDK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R LE QNF ++ ++R+ G Q +++ + Sbjct: 65 PADLDQLRDTLEKAGFESPILQNFGSTRDVMIRMPPATGT-AGQELGNKVISIINESVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + ++I+ + +L+Y+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGAMALLIALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 LGVLSLFHIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|325272154|ref|ZP_08138585.1| preprotein translocase subunit SecF [Pseudomonas sp. TJI-51] gi|324102717|gb|EGC00133.1| preprotein translocase subunit SecF [Pseudomonas sp. TJI-51] Length = 302 Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 159/287 (55%), Gaps = 5/287 (1%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R I++L ++ ++ + GLN+G+DF GG + + RP DL VR+ Sbjct: 1 MKTINFMGVRNVAFAITVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + Q+F + LVR+ + +T++ E Sbjct: 61 ELVDSGFHEAVVQSFGATTDLLVRMPGDDPQLGN----KVAAALQKAGGDNPATLKRVEF 116 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VGP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ TLG + F I Sbjct: 117 VGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQI 176 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ S + I+ S +TL R++ TS Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINVSTTQTLLRTIATS 235 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ +++ + +GG + F++ + G++ SSI+IA +L+++ Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282 Score = 47.0 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 105/259 (40%), Gaps = 5/259 (1%) Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320 F + F ++ A ++D A V + + Sbjct: 26 FSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRAELVDSGFHEAVVQSFGATTDLLVRM 85 Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380 + +AA L+ + VG +G + +G ++ L I++++ Sbjct: 86 PGDDPQLGNKVAAALQKAGGDNPATLKRVEFVGPQVGEELRDQGGMGMLLALGGILIYLA 145 Query: 381 VLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439 + K+ + A S+ +V++TL +LS T L +A ++ IG +++ I+V +R+R Sbjct: 146 FRFQWKFAVGAIISLIHDVVVTLGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVR 205 Query: 440 EENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 E R + ++ S TI S T L +LFF GG + GF++ + + + Sbjct: 206 ENFRVMRKASLIENINVSTTQTLLRTIATSVSTLLAIAALLFF-GGDNLFGFSLALFIGV 264 Query: 497 LISMFTAISIVRAMMIFII 515 + +++I I ++I++ Sbjct: 265 MAGTYSSIYIANVVLIWLN 283 >gi|148546110|ref|YP_001266212.1| preprotein translocase subunit SecF [Pseudomonas putida F1] gi|148510168|gb|ABQ77028.1| protein translocase subunit secF [Pseudomonas putida F1] Length = 302 Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 159/287 (55%), Gaps = 5/287 (1%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R I++L ++ ++ + GLN+G+DF GG + + RP DL VR+ Sbjct: 1 MKTINFMGVRNVAFAITVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + Q+F + LVR+ + +T++ E Sbjct: 61 ELVDSGFHEAVVQSFGATTDLLVRMPGDDPQLGN----KVAAALQKAGGDNPATVKRVEF 116 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VGP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ TLG + F I Sbjct: 117 VGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIVSLIHDVVVTLGILSFFQI 176 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ S + I+ S +TL R++ TS Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINVSTTQTLLRTIATS 235 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ +++ + +GG + F++ + G++ SSI+IA +L+++ Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282 Score = 47.0 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 105/259 (40%), Gaps = 5/259 (1%) Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320 F + F ++ A ++D A V + + Sbjct: 26 FSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRAELVDSGFHEAVVQSFGATTDLLVRM 85 Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380 + +AA L+ + VG +G + +G ++ L I++++ Sbjct: 86 PGDDPQLGNKVAAALQKAGGDNPATVKRVEFVGPQVGEELRDQGGMGMLLALGGILIYLA 145 Query: 381 VLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439 + K+ + A S+ +V++TL +LS T L +A ++ IG +++ I+V +R+R Sbjct: 146 FRFQWKFAVGAIVSLIHDVVVTLGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVR 205 Query: 440 EENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 E R + ++ S TI S T L +LFF GG + GF++ + + + Sbjct: 206 ENFRVMRKASLIENINVSTTQTLLRTIATSVSTLLAIAALLFF-GGDNLFGFSLALFIGV 264 Query: 497 LISMFTAISIVRAMMIFII 515 + +++I I ++I++ Sbjct: 265 MAGTYSSIYIANVVLIWLN 283 >gi|213027197|ref|ZP_03341644.1| preprotein translocase subunit SecF [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 300 Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats. Identities = 85/282 (30%), Positives = 159/282 (56%), Gaps = 1/282 (0%) Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606 FW GIS L I +I ++ G N+G+DF GG + + +P ++ V+R L+ + Sbjct: 1 FWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAGYEEP 60 Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666 QNF + +VR+ G++ Q ++V + ++ E VGP + +L Sbjct: 61 QLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQNAAVKRIEFVGPSVGADLA 120 Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 + G + ++++ I++L+Y+ RF+W A G + L D+ TLG +LF IE +LT VA++ Sbjct: 121 QTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASL 180 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 +++IGYS+ND +VV DR+R+N + + ++ + S+ +TL R++ TS + +L + Sbjct: 181 MSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSGTTLVVILML 239 Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++GG V+ F++ M G+ + +SSI++A+ + L + R Sbjct: 240 YLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 281 >gi|313201914|ref|YP_004040572.1| protein-export membrane protein secf [Methylovorus sp. MP688] gi|312441230|gb|ADQ85336.1| protein-export membrane protein SecF [Methylovorus sp. MP688] Length = 312 Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats. Identities = 94/289 (32%), Positives = 165/289 (57%), Gaps = 3/289 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I FM IS++ + S+ L GLN G+DF GG + V + D+ +R ++ Sbjct: 10 IPFMSYGRLTTAISLITFLLSVFFLAHRGLNLGVDFTGGTMMEVSYPQAADIGKIREAVD 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 S+ + D + QNF ++ L+RL +P ++ + + E V + + P + E VG Sbjct: 70 SVGLKDATVQNFGTSRDVLIRLPLKP--ELSISALSEQVLTALQKADPNVKMNRVESVGA 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ +EL G + +++ +I ++ Y+ +RF+W FA+ A+ + D+ LGFFA F EFN Sbjct: 128 QVGQELYENGALALLLVSIGIMAYLALRFEWRFAVAAVIANMHDVVIILGFFAFFQWEFN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AAVL ++GYSVN+ VVV+DR+R+N + S ++I+ +I T+ R+V T + Sbjct: 188 LTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRK-ASVSEVINNAITRTMSRTVITHFST 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + VL M +GG V+ +F++ + GI+ SS+ +A+PI +++ R Sbjct: 247 QLMVLSMLFFGGEVLHNFSLALTIGILFGIYSSVLVASPIAMYLGVSRE 295 >gi|295111464|emb|CBL28214.1| protein-export membrane protein SecF [Synergistetes bacterium SGP1] Length = 288 Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats. Identities = 86/292 (29%), Positives = 153/292 (52%), Gaps = 8/292 (2%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 FM R + +S + + S+ LFT GLN GIDF GG + + + +++ VR Sbjct: 1 MNRNYNFMALRRPALSLSAVLVLASLAFLFTRGLNLGIDFTGGNVIQLEFDNLPEVAEVR 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + + + Q F + + E V + + P + E Sbjct: 61 KVVSGVVAQEAMIQKFGEKG-------VIIRTNEDTEESREQVISVLQKAFPDMKVSGYE 113 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL R+ ++GV I+ +A+LIYI +RF++ FA+ ++ L+ D+ LGFF+L Sbjct: 114 KVGPVVGGELRRQAVIGVSIALVAILIYITVRFRFRFAVVSVVPLVHDVLIALGFFSLTQ 173 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 +E + + +AA+LT++GYS+N+ +++ DR+R+N + L++ S+N+TL R++ T Sbjct: 174 MEVSSSFIAAILTIVGYSLNNTIIILDRIRENWRDLGR-DGIEKLVNDSVNQTLARTINT 232 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ V+ + VWGG V+ +F+ M GI+ SS+ +A L+ Y R Sbjct: 233 TLTTLFPVIALCVWGGPVLQAFSYAMLVGIIAGTYSSMLVATGALIEWYKAR 284 >gi|283784226|ref|YP_003364091.1| protein-export protein [Citrobacter rodentium ICC168] gi|282947680|emb|CBG87235.1| protein-export protein [Citrobacter rodentium ICC168] Length = 615 Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats. Identities = 164/524 (31%), Positives = 290/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIKAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D+ ++ ++ Q ++ + + Sbjct: 164 PYTTVRKEDNYGLSINFRDASARDEAIAYLSKRHQ-----------DLVISSQGSNALRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQMREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL + +LFM++ Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLAVSILFMVLFYKKFGLIATSALIANLVLIVGVMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE +S+ +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRSIQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + ++++ + +K F L A + LI ++ +G +L Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLAVSILFMVLFYK-KFGLIATSALIANLVLIVGVMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + S + I++ Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSIQQAINEGYAGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612 >gi|237823426|pdb|2V50|A Chain A, The Missing Part Of The Bacterial Mexab-Oprm System: Structural Determination Of The Multidrug Exporter Mexb gi|237823427|pdb|2V50|B Chain B, The Missing Part Of The Bacterial Mexab-Oprm System: Structural Determination Of The Multidrug Exporter Mexb gi|237823428|pdb|2V50|C Chain C, The Missing Part Of The Bacterial Mexab-Oprm System: Structural Determination Of The Multidrug Exporter Mexb gi|237823429|pdb|2V50|D Chain D, The Missing Part Of The Bacterial Mexab-Oprm System: Structural Determination Of The Multidrug Exporter Mexb gi|237823430|pdb|2V50|E Chain E, The Missing Part Of The Bacterial Mexab-Oprm System: Structural Determination Of The Multidrug Exporter Mexb gi|237823431|pdb|2V50|F Chain F, The Missing Part Of The Bacterial Mexab-Oprm System: Structural Determination Of The Multidrug Exporter Mexb Length = 1052 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L ++++P+ P + Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + + + IT++F + +V LQ Sbjct: 54 AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + S I+ D + ++ Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 DP++L T +S N G Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++G Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + A L + S Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 LS +A + + ++ + + +G + V Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++S++ + ++ F V G + M+K Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 +++ + Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665 Score = 79.3 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q I+ Q + + +++ + + + + Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S R+ KS+ Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M LPMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + + G + ++G + + PG S K Sbjct: 790 VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + + L Sbjct: 850 LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L ++ G+ ++ +LT IG S + +++ + ++ L+ + Sbjct: 907 GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814 ++ L V TS+A + V+P+A+ G + + G+V A +IF Sbjct: 964 EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018 >gi|15595623|ref|NP_249117.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexB [Pseudomonas aeruginosa PAO1] gi|116054157|ref|YP_788600.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa UCBPP-PA14] gi|12230911|sp|P52002|MEXB_PSEAE RecName: Full=Multidrug resistance protein MexB; AltName: Full=Multidrug-efflux transporter MexB gi|9946282|gb|AAG03815.1|AE004479_10 Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexB [Pseudomonas aeruginosa PAO1] gi|115589378|gb|ABJ15393.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa UCBPP-PA14] Length = 1046 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L ++++P+ P + Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + + + IT++F + +V LQ Sbjct: 54 AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + S I+ D + ++ Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 DP++L T +S N G Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++G Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + A L + S Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 LS +A + + ++ + + +G + V Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++S++ + ++ F V G + M+K Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 +++ + Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665 Score = 79.3 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q I+ Q + + +++ + + + + Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S R+ KS+ Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M LPMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + + G + ++G + + PG S K Sbjct: 790 VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + + L Sbjct: 850 LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L ++ G+ ++ +LT IG S + +++ + ++ L+ + Sbjct: 907 GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814 ++ L V TS+A + V+P+A+ G + + G+V A +IF Sbjct: 964 EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018 >gi|297539527|ref|YP_003675296.1| protein-export membrane protein SecD [Methylotenera sp. 301] gi|297258874|gb|ADI30719.1| protein-export membrane protein SecD [Methylotenera sp. 301] Length = 614 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 164/521 (31%), Positives = 277/521 (53%), Gaps = 30/521 (5%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74 + LL PN+L + LGLDLRGG H +++VD ++ + + Sbjct: 101 VALNLLSRSPNWLRSLGA---------KPMYLGLDLRGGVHFLMQVDMKAALSKAAERFV 151 Query: 75 DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134 + + L+KE I + + + + F ++ + + Sbjct: 152 GDFKIALRKERISYVGVSREGETVQIHFNNAEELTKAHAVIAKEY--------PNLTLEE 203 Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194 EK + L+ + AI+Q+++ + RI+++G++E IQ+ G+ R+++QLP Sbjct: 204 STIGEEKILKASLNLVEQKSIQDFAIKQNIQTLHNRINELGVAEPIIQQQGADRVVVQLP 263 Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG---------FMFGVRFLRDSDGNQYLVED 245 G QD ++ +++LG TA + V S G ++ DG LV+ Sbjct: 264 GVQDTAKAKEILGRTATLEIRMVDEEKSDAATLEKAEKGQAPIGDDVFKNRDGRAVLVKK 323 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGR 301 V ++G ++ A D ++ + V+++ D GAR F +VTR+N+GK + Sbjct: 324 SVVLTGDYITDAGPGVDSQSGRSTVNVTLDARGARIFQQVTRENVGKRMAILLIEKGSTE 383 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 V+TAP IN+ I G+ QISG + A +A +LRAG+L ++IVEER VG +G D+I Sbjct: 384 VITAPTINEEIGGGRVQISGMANTQEATDIALLLRAGALAAPMDIVEERTVGPSMGQDNI 443 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 +G + + G I + M++ Y +G V+ ++ +N++L +A+LS+L ATLTLP +A I Sbjct: 444 NRGIHSTLWGFAAIAVMMMIYYVAFGAVSVTALAINLLLLVAILSMLQATLTLPGLAAIA 503 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+A+D+N+L+NERIREE R + S+ G+ RA+ TI DSN+T LIA + LF FG Sbjct: 504 LALGMAIDANVLINERIREELRNGNTPQASIHAGYERAWDTILDSNVTTLIAGLALFMFG 563 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G ++GFA+ L IL SMF+A+ + RA++ I Y++ + Sbjct: 564 TGPIKGFAVVHVLGILTSMFSAVLVSRAIVNLIYGYRRKLT 604 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 89/205 (43%), Gaps = 4/205 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 Q + + + I VGP + ++ I +GI + A+ + + I + Sbjct: 406 NTQEATDIALLLRAGALAAPMDIVEERTVGPSMGQDNINRGIHSTLWGFAAIAVMMMIYY 465 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 F ++T L +++ + ++ L +AA+ +G +++ V++ +R+R+ + Sbjct: 466 -VAFGAVSVTALAINLLLLVAILSMLQATLTLPGLAAIALALGMAIDANVLINERIREEL 524 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + + I + +++ I+ L + ++G I FA+ GI+ + Sbjct: 525 R---NGNTPQASIHAGYERAWDTILDSNVTTLIAGLALFMFGTGPIKGFAVVHVLGILTS 581 Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833 S++ ++ I+ IY +R K ++ Sbjct: 582 MFSAVLVSRAIVNLIYGYRRKLTKL 606 Score = 41.2 bits (94), Expect = 0.80, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W IL +++ IGL+ +PNF +S +++ Sbjct: 3 RYPMWKNILVAVMILIGLIYTIPNFFGESPA-------------------------VQIT 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D++ K+E I + Q + F ++ + D + L Sbjct: 38 PAKSTTKLDSALLDKVEDIFKQEKIEYDGVYQDARGVKARFKNTDTQIRAKDVLQANL 95 >gi|269965155|ref|ZP_06179289.1| protein-export membrane protein SecD [Vibrio alginolyticus 40B] gi|269830141|gb|EEZ84368.1| protein-export membrane protein SecD [Vibrio alginolyticus 40B] Length = 607 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 156/528 (29%), Positives = 275/528 (52%), Gaps = 45/528 (8%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + + RS L+ I Sbjct: 93 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKI 152 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE---- 142 ++R KE + + Q +K ++ ++ Sbjct: 153 RYRAIRPSG------------KEAVEVLLRNEEQLAEAKATLEKNHPDMIFVDSDSNGRY 200 Query: 143 -ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201 ++ ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R Sbjct: 201 ALTATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAR 260 Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256 +++LG TA + F +V G D DG +++ +V + G + Sbjct: 261 AKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD 320 Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV-------------- 302 ++ + +P V+IS D G + ++ NIGK +A V Sbjct: 321 -ASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILD 379 Query: 303 ----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G Sbjct: 380 KHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQ 439 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417 +I G A + G+V ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP I Sbjct: 440 QNIDMGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGI 499 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGIVL +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++L Sbjct: 500 AGIVLTVGMAVDANVLIFERIREEIRDGRSPQQAIHQGYANAFSTIADANITTLITAIIL 559 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 F G GAV+GFA+T+ + IL SMFTAI R ++ I K++ + I Sbjct: 560 FAVGTGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLIYGGKRVDKLSI 607 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I +A Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G + FA Sbjct: 515 LIFERIREEIRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I I+ IY + Sbjct: 572 VTLSIGILTSMFTAIIGTRCIVNLIYGGKR 601 >gi|54294898|ref|YP_127313.1| preprotein translocase subunit SecD [Legionella pneumophila str. Lens] gi|53754730|emb|CAH16217.1| hypothetical protein lpl1977 [Legionella pneumophila str. Lens] Length = 618 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 175/525 (33%), Positives = 279/525 (53%), Gaps = 38/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + + GLDLRGG H +LEVD + ++ + + L++ GI Sbjct: 103 NLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREAGI 162 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +R + +K I L F DS EN ++ + V + T T+ I Sbjct: 163 RYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDV----------VFVKTKTQNSILG 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 +S ++ + + IEQ+M I+R R++++G+ E+ +Q+ G+ R+ + LPG QD +R +Q+ Sbjct: 213 AISPAELNSIRQNTIEQTMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260 LG TA + FH V N + DG+ L++ +V +SG + A ++ Sbjct: 273 LGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVVLSGDSITSAVSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGR 301 FD +T P V I G F +VTR+NIGK + V Sbjct: 333 FDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEE 392 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + Q QI+G + A LA +LRAG+LP + VEER VG LG ++I Sbjct: 393 RVISAPVIQNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENI 452 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 +G ++ G+ LI+ M+V Y +GL+AD ++ LN++ ALLS++ ATLTLP IAGIV Sbjct: 453 RRGLISLEVGMGLILALMLVYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R S ++ G+ RA+STI D+N+T LI ++LF G Sbjct: 513 LTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 G VRGFA+ + L +L SM T I+ RA++ + + +K + I Sbjct: 573 TGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIG 617 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 96/255 (37%), Gaps = 4/255 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 G V + + + + + +N L G + ++ Sbjct: 363 GKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVIQNALGSNFQITGLTDSKEASNL 422 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + VGP + +E IR+G++ + + +L + + + + F L A Sbjct: 423 ALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILALMLVYYHF-FGLIA 481 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 L+L++ ++ L +A ++ +G +V+ V++Y+R+R+ ++ +S Sbjct: 482 DIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELR---NGLS 538 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 + I + ++ I + + G + FA+ ++ G++ + + I Sbjct: 539 PQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYT 598 Query: 817 APILLFIYDWRAKNA 831 I+ + Y R Sbjct: 599 RAIVNWYYGGRNVKK 613 Score = 42.4 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 27/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ +I IG + A+PN ++ + V Sbjct: 4 KYPLWKNLMLIVIAVIGFVYAIPNLYTENPV---------------------------VQ 36 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + +++ S LK + S+ ++ + + F+ + + D + L Sbjct: 37 ISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSSTDSQLLARDVIKNSL 94 >gi|3983168|gb|AAC83834.1| SecD [Salmonella enterica] Length = 615 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 295/524 (56%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F DS+ ++ + L + ++ + + ++ Sbjct: 164 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVKKLSI 615 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + L+ ++ +G +L Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + I++ Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVKK 612 >gi|315634698|ref|ZP_07889982.1| protein-export membrane protein SecF [Aggregatibacter segnis ATCC 33393] gi|315476646|gb|EFU67394.1| protein-export membrane protein SecF [Aggregatibacter segnis ATCC 33393] Length = 326 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 92/293 (31%), Positives = 157/293 (53%), Gaps = 6/293 (2%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 ++FM+ R WG S++ S+ +FT G N+G+DF GG+ + ++P DL +R Sbjct: 24 PFRLVEFMKFRLWGYLASVVIIAVSLFFVFTKGFNWGLDFTGGVVVDTHFSQPADLEKIR 83 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 S L I Q G ++ ++RL ++ + VKK + + I++ E Sbjct: 84 STLVQNGIESPLVQTTGGVRDVMIRLPATD-----DAQIGDHVKKMLNTLDSDIQIRSIE 138 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + I +L+Y+ +RF+W A G + +L D+ TLG F+ Sbjct: 139 FVGPNVGEELTQGAIYATLATLIMLLLYVGMRFEWRLATGGVLSLAHDVIVTLGAFSYLQ 198 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT +AA+L+++GYS+ND +VV+DR+R+N + + + + +TL R++ T Sbjct: 199 IEMDLTFIAAILSVVGYSLNDSIVVFDRVRENFRKIRRISAIDIIDIS-LTQTLSRTIMT 257 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S+ I V+ + ++GG I SF++ + GI SSIFIA I + R Sbjct: 258 SLTTLIVVIALFIFGGPTIHSFSLALLIGIGFGTYSSIFIAIAIAYDLGLTRE 310 >gi|269138318|ref|YP_003295018.1| preprotein translocase subunit SecF [Edwardsiella tarda EIB202] gi|267983978|gb|ACY83807.1| preprotein translocase subunit SecF [Edwardsiella tarda EIB202] gi|304558349|gb|ADM41013.1| Protein-export membrane protein SecF [Edwardsiella tarda FL6-60] Length = 322 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 166/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L I FMR + +S L + S +++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNHGRKVIDFMRWDYVAFTLSGLLLLASCLVMYVKGFNWGLDFTGGTVIELTVEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 DL+ +R+ L + QNF ++ ++R+ G+ Q +V I Sbjct: 65 APDLNAMRAALVKSGFDEPVVQNFGSSRDIMIRMAPISGN-AGQELGNRVVAVVEQVIDG 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + ++++ I++LIY+ RF+W ALGA+ L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALISILIYVGFRFEWRLALGAVLALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 LGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIVNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + V+GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLVVVLCLYVFGGAMLKGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|103487198|ref|YP_616759.1| SecF protein [Sphingopyxis alaskensis RB2256] gi|98977275|gb|ABF53426.1| protein translocase subunit secF [Sphingopyxis alaskensis RB2256] Length = 327 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 112/298 (37%), Positives = 173/298 (58%), Gaps = 2/298 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L+PD IQF++ R + IS+L + SI L+ GLN G+DF GG + V Sbjct: 1 MRLLKLVPDDTNIQFLKWRNVAMAISLLMIVASIALVAVRGLNLGVDFVGGQSVRVEFTG 60 Query: 588 -PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + +R + ++ +G+ + Q F +K +R GD A R + + I + Sbjct: 61 AMPPIDEIREKVGAIGLGEATIQQFGSDKAVSIRTALPEGDKAAAERAGQRLVAGIADAF 120 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 P + + E V K+S EL+R G + +I++ IA+ IYIWIRF+W F +GA+ L D+T Sbjct: 121 PTAKTGSVETVSGKVSEELLRTGALSLILAMIAISIYIWIRFEWQFGVGALFALFHDVTL 180 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T GFFAL ++F+L VAA+LT+IGYS+ND +VV+DR+R+N+K Y + L+D S+N Sbjct: 181 TFGFFALTQMQFDLNIVAALLTIIGYSLNDTIVVFDRIRENLKKYRK-MEIIPLLDLSVN 239 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 ETL R+V TS I++ + G VI F M GI V SS++++APIL+++ Sbjct: 240 ETLARTVMTSFTMLIALAVLLWVGPDVIFGFTAAMLLGIFVGTYSSVYMSAPILVWLK 297 >gi|126174991|ref|YP_001051140.1| preprotein translocase subunit SecF [Shewanella baltica OS155] gi|160875989|ref|YP_001555305.1| preprotein translocase subunit SecF [Shewanella baltica OS195] gi|304411829|ref|ZP_07393440.1| protein-export membrane protein SecF [Shewanella baltica OS183] gi|307303403|ref|ZP_07583158.1| protein-export membrane protein SecF [Shewanella baltica BA175] gi|125998196|gb|ABN62271.1| protein translocase subunit secF [Shewanella baltica OS155] gi|160861511|gb|ABX50045.1| protein-export membrane protein SecF [Shewanella baltica OS195] gi|304349689|gb|EFM14096.1| protein-export membrane protein SecF [Shewanella baltica OS183] gi|306913763|gb|EFN44185.1| protein-export membrane protein SecF [Shewanella baltica BA175] gi|315268185|gb|ADT95038.1| protein-export membrane protein SecF [Shewanella baltica OS678] Length = 315 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 165/291 (56%), Gaps = 3/291 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + F+R +S + + S+ L T+G+N+G+DF GG + + PVDL+ +R Sbjct: 9 HTVNFLRHALPISIMSAVLVLGSLVSLATNGINWGLDFTGGTVVEMEFTNPVDLNALRVQ 68 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + QNF ++ LVRLQ + G ++ V + ++ P + E V Sbjct: 69 LTTPDSEGAIVQNFGSSRDVLVRLQVKEGVKSDVQ--VKSVMEAAQKVDPQVQQKRVEFV 126 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ +EL +G + V+++ I ++IY+ RF+W A G++ L D+ TLG F++F +E Sbjct: 127 GPQVGKELAEQGALAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSVFQLE 186 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +A +LT++GYS+ND +VV+DR+R+N S ++++ SI +T+ R++ T+ Sbjct: 187 FDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKS-DPEEVVNTSITQTMSRTIITTG 245 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 246 TTLVVVVALFLKGGTMIHGFATALLMGIFVGTYSSIYVASFLAIKLGINRE 296 >gi|34496799|ref|NP_901014.1| preprotein translocase subunit SecF [Chromobacterium violaceum ATCC 12472] gi|34102654|gb|AAQ59019.1| protein-export membrane protein SecF [Chromobacterium violaceum ATCC 12472] Length = 311 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 167/299 (55%), Gaps = 3/299 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG L V + + Sbjct: 1 MELFRIKRDIPFMSYGRLTTAISLVTFILAVFFLATRGLNFSVEFTGGTVLEVQYQQSAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR +++L++G+ + QN ++ ++RL +PG S AQ + + V ++ P Sbjct: 61 LDQVREKVDALKLGESTVQNLGTSRDVMIRLPNKPGTSTAQ--LSDKVMGQLKAADPTVQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ + VGP + EL+ G+ VI+ + +++Y+ IRF+W FA+ AI + D+ LG Sbjct: 119 LRKVDFVGPSVGEELVTHGLTAVILVCVGIMLYLAIRFEWRFAVAAIIANMHDVVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + ++ID +I T+ Sbjct: 179 FAFFRWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPGMRGHAVAEVIDNAITSTM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T + + V+ M V+GG + FA+ + GIV SS+ +A+PI L++ R Sbjct: 239 SRTIITHFSTEMMVVSMLVFGGPALHGFAMALTIGIVFGIYSSVLVASPIALWLGVKRE 297 >gi|37527757|ref|NP_931102.1| preprotein translocase subunit SecF [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787193|emb|CAE16273.1| Protein-export membrane protein SecF [Photorhabdus luminescens subsp. laumondii TTO1] Length = 322 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 95/301 (31%), Positives = 168/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR GIS+L + S+ ++ T G N+G+DF GG + + ++ Sbjct: 5 YTVEQLNYGRRVYDFMRWDNVAFGISLLLLVASVFVMATRGFNWGLDFTGGTVIEIKLSQ 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 DL +R NL D QNF ++ +VR+ G + + +++K I Sbjct: 65 SADLDKMRDNLAKAGFEDPLLQNFGSSRDVMVRMPPVTG-AANEELGKKVIKVINDTIDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +++ EIVGP + EL + G + ++ + I +LIY+ RF+W ALGA+ L D+ T Sbjct: 124 DASVNRIEIVGPSVGAELAQDGAMALLAALICILIYVGFRFEWRLALGAVLALAHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + S+ ++++ S+ + Sbjct: 184 LGVLSLFRIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLLVVLMLYIFGGAMLKGFSLAMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|53726172|ref|YP_103940.1| preprotein translocase subunit SecD [Burkholderia mallei ATCC 23344] gi|121601311|ref|YP_991652.1| preprotein translocase subunit SecD [Burkholderia mallei SAVP1] gi|124386375|ref|YP_001027148.1| preprotein translocase subunit SecD [Burkholderia mallei NCTC 10229] gi|126448330|ref|YP_001082097.1| preprotein translocase subunit SecD [Burkholderia mallei NCTC 10247] gi|167000541|ref|ZP_02266353.1| protein-export membrane protein SecD [Burkholderia mallei PRL-20] gi|217420899|ref|ZP_03452404.1| protein-export membrane protein SecD [Burkholderia pseudomallei 576] gi|238562008|ref|ZP_00441102.2| protein-export membrane protein SecD [Burkholderia mallei GB8 horse 4] gi|254178803|ref|ZP_04885457.1| protein-export membrane protein SecD [Burkholderia mallei ATCC 10399] gi|254207995|ref|ZP_04914345.1| protein-export membrane protein SecD [Burkholderia mallei JHU] gi|254355863|ref|ZP_04972141.1| protein-export membrane protein SecD [Burkholderia mallei 2002721280] gi|52429595|gb|AAU50188.1| protein-export membrane protein SecD [Burkholderia mallei ATCC 23344] gi|121230121|gb|ABM52639.1| protein-export membrane protein SecD [Burkholderia mallei SAVP1] gi|124294395|gb|ABN03664.1| protein-export membrane protein SecD [Burkholderia mallei NCTC 10229] gi|126241200|gb|ABO04293.1| protein-export membrane protein SecD [Burkholderia mallei NCTC 10247] gi|147751889|gb|EDK58956.1| protein-export membrane protein SecD [Burkholderia mallei JHU] gi|148024838|gb|EDK83016.1| protein-export membrane protein SecD [Burkholderia mallei 2002721280] gi|160694717|gb|EDP84725.1| protein-export membrane protein SecD [Burkholderia mallei ATCC 10399] gi|217396311|gb|EEC36328.1| protein-export membrane protein SecD [Burkholderia pseudomallei 576] gi|238523482|gb|EEP86920.1| protein-export membrane protein SecD [Burkholderia mallei GB8 horse 4] gi|243063595|gb|EES45781.1| protein-export membrane protein SecD [Burkholderia mallei PRL-20] Length = 675 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608 Score = 47.8 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 35/356 (9%), Positives = 88/356 (24%), Gaps = 27/356 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + S K + LG D L Sbjct: 3 RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + + + + + I + D+ + + D + L Sbjct: 53 VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100 Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + L + + + ++ + ++ + ++ M + Sbjct: 101 ADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 S++ Q + TA+ + + + S+ + Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + L + ++ V + V + Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 A P + + +A L K I + Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336 >gi|167586182|ref|ZP_02378570.1| preprotein translocase subunit SecD [Burkholderia ubonensis Bu] Length = 674 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 160/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ + I + ++ + ++F+D + E+ + + + Sbjct: 160 ASDARTLLRDKNIRDGGVSRVDQSVVVNFSDPQTAEDARKALASSVTELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ GS RI+++L Sbjct: 215 ---GGGGVQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKDVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI+ Y +G+++ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFVAIAVFMILYYMLFGMISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R ++ G+S A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGHPPQLAIQAGYSHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 89/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI +A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFVAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 ILYY-MLFGMISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GHPPQLAIQAGYSHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608 Score = 40.8 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 29/124 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ ++V Sbjct: 3 RYPIWKYVVMVVALAIGFLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI----QNKITLSFADSRFKENIADKVTL 117 ++ + L I + I + D+ + + D + Sbjct: 38 SGKATVKLDSATLSQVEAALTAAQIKPDDVTFENTAANANIRVRLKDTDTQLRVKDLLQK 97 Query: 118 FLQG 121 L Sbjct: 98 SLNA 101 >gi|317492968|ref|ZP_07951392.1| protein-export membrane protein SecD [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919090|gb|EFV40425.1| protein-export membrane protein SecD [Enterobacteriaceae bacterium 9_2_54FAA] Length = 618 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 161/526 (30%), Positives = 286/526 (54%), Gaps = 41/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H +++VD + ++ + D LRS L+++GI Sbjct: 104 NLAPATPRWLEAIGAEPMKLGLDLRGGVHFLMQVDMETALSKLQEQSMDMLRSDLREKGI 163 Query: 87 GVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143 ++R+ + ++F D+ ++ + ++ + + + Sbjct: 164 PYSTIRKTDGSTNGVIITFRDAETRDKASSYLS----------PRYLNNLVFSKVGDNGL 213 Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R + Sbjct: 214 KAVMTDQRLQEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAK 273 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGAT 258 ++LG TA + F V N G DG ++ +V ++G H+ +T Sbjct: 274 EILGATATLEFRLVNSNADSTAAANGRVPGDSEVKYTRDGRPIVMYKRVILTGDHITDST 333 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------ 306 ++ + ++P V+IS D G T+DNIGKP+A + + Sbjct: 334 SS-QDEFNRPQVNISLDGAGGSAMSNFTKDNIGKPMATLFVEYKDSGKKDASGKSILAKQ 392 Query: 307 ------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 Q+ +I+G A L+ +LRAG+L + IVEER +G LG+ + Sbjct: 393 EEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGAQN 452 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAG 419 I +G A +AGL++ +LFM+ Y K+GL+A ++ N++L + ++SLL ATLT+P IAG Sbjct: 453 ITQGLEACLAGLIISILFMVFFYKKFGLIATSALLANLVLIVGIMSLLPGATLTMPGIAG 512 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL + +AVD+N+L+NERI+EE +SV +++ G+ A+S+IFD+N+T LI ++L+ Sbjct: 513 IVLTLAVAVDANVLINERIKEELSNGRSVQQAINEGYQGAFSSIFDANVTTLIKVIILYA 572 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 573 VGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRINKLSI 618 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 77/177 (43%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + I ++++ +K F L A + L+ ++ +G +L Sbjct: 443 TIGPTLGAQNITQGLEACLAGLIISILFMVFFYK-KFGLIATSALLANLVLIVGIMSLLP 501 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + S + I++ Sbjct: 502 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAINEGYQGAFSSIFD 558 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + N Sbjct: 559 ANVTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRINK 615 Score = 42.4 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 30/114 (26%), Gaps = 26/114 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I+ ++ IGLL ALPN + + Sbjct: 4 RYPLWKYIMLILVIAIGLLYALPNLYGEDPA---------------------VQIT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115 L DEL I S+ I F D+ + + + Sbjct: 42 GVAASETTLVQVRDELEKQ----HIASKSIALENGAILARFKDTDVQLRAREVL 91 >gi|187931931|ref|YP_001891916.1| preprotein translocase subunit SecF [Francisella tularensis subsp. mediasiatica FSC147] gi|187712840|gb|ACD31137.1| preprotein translocase, subunit F, membrane protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 314 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 84/300 (28%), Positives = 159/300 (53%), Gaps = 3/300 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 +I F+ + + S+L + S+ +FT GLN G+DF GG Q+ + + Sbjct: 1 MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648 S + + + + G+ N + + + + + ++ Sbjct: 61 DSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVENSLD 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + +Q+ +GP++ +EL G++ +I++ + +LIYI RF+ F + A L+ D L Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N + + S +++++SIN+T Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKI-RNASVVEVVNRSINDT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TS + V+ + ++GGS + +F++ + GIVV SSI++A + + + R Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLAIILGIVVGTYSSIYVAGVVAVALGLNRE 299 >gi|53720479|ref|YP_109465.1| preprotein translocase subunit SecD [Burkholderia pseudomallei K96243] gi|52210893|emb|CAH36881.1| putative protein-export membrane protein [Burkholderia pseudomallei K96243] Length = 674 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608 Score = 47.8 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 35/356 (9%), Positives = 88/356 (24%), Gaps = 27/356 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + S K + LG D L Sbjct: 3 RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + + + + + I + D+ + + D + L Sbjct: 53 VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100 Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + L + + + ++ + ++ + ++ M + Sbjct: 101 ADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 S++ Q + TA+ + + + S+ + Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + L + ++ V + V + Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 A P + + +A L K I + Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336 >gi|254468659|ref|ZP_05082065.1| protein-export membrane protein SecF [beta proteobacterium KB13] gi|207087469|gb|EDZ64752.1| protein-export membrane protein SecF [beta proteobacterium KB13] Length = 312 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 166/285 (58%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I F++ R ISI+ I + LF GLNYG+DF GG + + ++ +R L Sbjct: 10 IPFLKYRKIAAFISIITFILAFFFLFQKGLNYGVDFTGGTIIEISYEEKANVDEIRGQLT 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + + +I QNF +K+ L+R+ + ++ + E+V ++++++ I+ E VG Sbjct: 70 QINLNEIQVQNFGTDKDVLIRMPL--NEDISIAELSELVNQELSKLNNPFEIKRVESVGG 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ EL G + ++ + +++Y+ +RF+W FAL A+ + D+ LGFFA F EFN Sbjct: 128 QVGEELFENGALAILFVCLGIILYLSLRFEWRFALAAVVANMHDVIIILGFFAFFQWEFN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AAVL ++GYSVN+ VVV+DR+R+N K S S D+++ +I T+ R++ T ++ Sbjct: 188 LTVLAAVLAVLGYSVNESVVVFDRVRENFKKMRRS-SVIDVMNNAITRTMSRTIMTHLST 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 V+ M ++GG ++ +F++ + GI+ SSI + P+ L++ Sbjct: 247 QTVVISMLIFGGEILHNFSLALTIGILFGIYSSIMVGCPMALWLG 291 >gi|262395134|ref|YP_003286988.1| protein-export membrane protein SecD [Vibrio sp. Ex25] gi|262338728|gb|ACY52523.1| protein-export membrane protein SecD [Vibrio sp. Ex25] Length = 607 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 156/528 (29%), Positives = 276/528 (52%), Gaps = 45/528 (8%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + + RS L++ I Sbjct: 93 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 152 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE---- 142 ++R KE + + Q +K ++ ++ Sbjct: 153 RYRAIRPSG------------KEAVEVLLRNEEQLAEAKAMLEKNHPDMLFVESDSNGRY 200 Query: 143 -ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201 ++ ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R Sbjct: 201 ALTATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAR 260 Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256 +++LG TA + F +V G D DG +++ +V + G + Sbjct: 261 AKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD 320 Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV-------------- 302 ++ + +P V+IS D G + ++ NIGK +A V Sbjct: 321 -ASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILD 379 Query: 303 ----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G Sbjct: 380 KHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQ 439 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417 +I G A + G+V ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP I Sbjct: 440 QNIDMGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGI 499 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AGIVL +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++L Sbjct: 500 AGIVLTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIIL 559 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 F G GAV+GFA+T+ + IL SMFTAI R ++ I K++ + I Sbjct: 560 FAVGTGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLIYGGKRVDKLSI 607 Score = 144 bits (361), Expect = 8e-32, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I +A Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G + FA Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I I+ IY + Sbjct: 572 VTLSIGILTSMFTAIIGTRCIVNLIYGGKR 601 >gi|294677320|ref|YP_003577935.1| protein-export membrane protein SecF [Rhodobacter capsulatus SB 1003] gi|6647840|sp|O33518|SECF_RHOCA RecName: Full=Protein-export membrane protein secF gi|2252774|gb|AAB62802.1| SecF [Rhodobacter capsulatus SB 1003] gi|294476140|gb|ADE85528.1| protein-export membrane protein SecF [Rhodobacter capsulatus SB 1003] Length = 333 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 110/318 (34%), Positives = 177/318 (55%), Gaps = 13/318 (4%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 R L+P+ F R ++ G +I+ I S+ L GLN+GIDFKGG + + Sbjct: 1 MAFRLKLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTEST 60 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK------------NFLVRLQYQPGDSVAQTRV 634 +D+ V R+ LE L++GD+ Q G + Sbjct: 61 TAIDVGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQEL 120 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + V+ +T + P I + E VGPK+S EL+ + ++ + + ++ YIW+RF+W FAL Sbjct: 121 VNKVETALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFAL 180 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 GA+ L+ D+ T+G FA+ ++F+LT VAA+LT+ GYS+ND VVV+DR+R+N+ Y + Sbjct: 181 GAVVALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKY-KT 239 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 + RD+++ S+NETL R+V T M ++++PM +WGG VI F M +G+ SS++ Sbjct: 240 MPLRDVMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVY 299 Query: 815 IAAPILLFIYDWRAKNAR 832 +A I+LFI R K + Sbjct: 300 VAKNIVLFIGLDRNKEKK 317 >gi|152989597|ref|YP_001345921.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa PA7] gi|150964755|gb|ABR86780.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa PA7] Length = 1046 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L ++++P+ P + Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + + + IT++F + +V LQ Sbjct: 54 AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + S I+ D + ++ Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 DP++L T +S N G Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSAAIQAQNVQISSGQLGGLPAVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++G Sbjct: 233 TIIGKTRL-------------QTAEQFEKILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + A L + S Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 LS +A + + ++ + + +G + V Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++S++ + ++ F V G + M+K Sbjct: 580 PGSTAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 +++ + Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665 Score = 79.3 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q I+ Q + + +++ + + + + Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S R+ KS+ Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M LPMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + + G + ++G + + PG S K Sbjct: 790 VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + + L Sbjct: 850 LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L ++ G+ ++ +LT IG S + +++ + ++ L+ + Sbjct: 907 GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814 ++ L V TS+A + V+P+A+ G + + G+V A +IF Sbjct: 964 EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018 >gi|302871250|ref|YP_003839886.1| protein-export membrane protein SecF [Caldicellulosiruptor obsidiansis OB47] gi|302574109|gb|ADL41900.1| protein-export membrane protein SecF [Caldicellulosiruptor obsidiansis OB47] Length = 310 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 9/303 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR- 595 I FM R + +SIL + + F G NY IDF GG L + ++ + + Sbjct: 1 MTKIDFMGKRKYFYIVSILIMVIGLISYFVQGFNYDIDFTGGTVLEINLHKVPSAAEIAD 60 Query: 596 -SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--- 651 L G + E + + +T + + + K+ E + Sbjct: 61 LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKNKTELSKETRDKLFEEIAKRYNLKK 120 Query: 652 ---QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + + VG IS EL + I V+I++I MLIYI IRF++ F A+ LI D+ L Sbjct: 121 EDLISYQNVGATISSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + LF I N T +AA+LT++GYS+ND +VV+DR+R+N ++ + +DL++ S+N+T Sbjct: 181 TVYTLFKIPLNSTFIAAILTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +GRS+ T+M+ I ++ + + G I F P+ G++ SSIFIA + Sbjct: 240 IGRSIATAMSVIIVLVVLYIMGVQSIKEFTFPLLIGVISGTYSSIFIATALWFDWELSTR 299 Query: 829 KNA 831 K Sbjct: 300 KKK 302 >gi|76811131|ref|YP_334744.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 1710b] gi|126454226|ref|YP_001067601.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 1106a] gi|242314993|ref|ZP_04814009.1| protein-export membrane protein SecD [Burkholderia pseudomallei 1106b] gi|254258050|ref|ZP_04949104.1| protein-export membrane protein SecD [Burkholderia pseudomallei 1710a] gi|76580584|gb|ABA50059.1| protein-export membrane protein SecD [Burkholderia pseudomallei 1710b] gi|126227868|gb|ABN91408.1| protein-export membrane protein SecD [Burkholderia pseudomallei 1106a] gi|242138232|gb|EES24634.1| protein-export membrane protein SecD [Burkholderia pseudomallei 1106b] gi|254216739|gb|EET06123.1| protein-export membrane protein SecD [Burkholderia pseudomallei 1710a] Length = 674 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608 Score = 47.4 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 35/356 (9%), Positives = 88/356 (24%), Gaps = 27/356 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + S K + LG D L Sbjct: 3 RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + + + + + I + D+ + + D + L Sbjct: 53 VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100 Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + L + + + ++ + ++ + ++ M + Sbjct: 101 ADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 S++ Q + TA+ + + + S+ + Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + L + ++ V + V + Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 A P + + +A L K I + Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336 >gi|56461247|ref|YP_156528.1| preprotein translocase subunit SecF [Idiomarina loihiensis L2TR] gi|56180257|gb|AAV82979.1| Preprotein translocase subunit SecF [Idiomarina loihiensis L2TR] Length = 315 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 165/298 (55%), Gaps = 2/298 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 +I + FMR R IS + + SI L + LN+G+DF GG L V + Sbjct: 1 MQEIIKTDERLPFMRFRGIMGIISAVLVVASIVSLSVNKLNFGLDFTGGTLLEVGFDSAA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DLS VR L+ D QN+ ++ L+RL+ + G A+ +++ TE Sbjct: 61 DLSRVRGALDEEGFSDAVVQNYGSQEEILIRLEPREG-VKAEQLGTTILESLRTEFDQTV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + E I +G + ++ + I +L+YI +RF+W A+GA+ L D+ TLG Sbjct: 120 EMRRIEFVGPNVGDEFIEQGGLAMLTALICILLYIAMRFEWRLAVGAVAALAHDVILTLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ +EF+LT +AA+L +IGYS+ND VVV DR+R+ + + ++ +++++ +TL Sbjct: 180 LFSILQLEFDLTVLAALLAVIGYSINDTVVVCDRIRETFRKFAK-LTPVQTVNRALTDTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 R++ TS+ + +L + GG +I FA + FG+V+ SSI+IA+ + L R Sbjct: 239 SRTLITSITTILVLLTLFFLGGPLIHGFATALLFGVVIGTYSSIYIASSVALKFGVSR 296 >gi|163802457|ref|ZP_02196350.1| protein export protein SecD [Vibrio sp. AND4] gi|159173758|gb|EDP58573.1| protein export protein SecD [Vibrio sp. AND4] Length = 618 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 153/524 (29%), Positives = 273/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + + RS L++ I Sbjct: 104 NLAPSTPDWLEAVGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 163 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + + + + D K + + Sbjct: 164 RYRAIRPSGTEGVEVLLRNEEQLAEAKTTLVKN--------HPDMKFVDADSNGRYALIA 215 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 216 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275 Query: 206 LGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G D DG +++ +V + G + ++ Sbjct: 276 LGATATLEFREVDDKADLSAAASGRAPAGSEVKMDRDGRPVVLKKRVILGGQSITD-ASS 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + ++ NIGK +A V Sbjct: 335 SADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILDKHEE 394 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A + G+V ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 455 MGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 514 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GAV+GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 TGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLVYGGKRVDKLSI 618 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I +A Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 466 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 467 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G + FA Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 582 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I I+ +Y + Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLVYGGKR 612 Score = 42.0 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVFFAVITAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + L KE + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDSVTKALDKEQLSHKSIALENGSILVRFNDTDTQISARDIISEAL 95 >gi|237813729|ref|YP_002898180.1| preprotein translocase subunit SecD [Burkholderia pseudomallei MSHR346] gi|237505594|gb|ACQ97912.1| preprotein translocase subunit SecD [Burkholderia pseudomallei MSHR346] Length = 675 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608 Score = 47.4 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 35/356 (9%), Positives = 88/356 (24%), Gaps = 27/356 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + S K + LG D L Sbjct: 3 RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + + + + + I + D+ + + D + L Sbjct: 53 VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100 Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + L + + + ++ + ++ + ++ M + Sbjct: 101 ADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 S++ Q + TA+ + + + S+ + Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + L + ++ V + V + Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 A P + + +A L K I + Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336 >gi|93005935|ref|YP_580372.1| preprotein translocase subunit SecF [Psychrobacter cryohalolentis K5] gi|92393613|gb|ABE74888.1| protein translocase subunit secF [Psychrobacter cryohalolentis K5] Length = 414 Score = 211 bits (536), Expect = 5e-52, Method: Composition-based stats. Identities = 97/324 (29%), Positives = 155/324 (47%), Gaps = 4/324 (1%) Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + A+ + + + D I FM+ +SI+ I SI Sbjct: 68 VFATTALDPSLALGDAAEDAAAYAEGGIKAVGDQRIIPFMKLEKPMGILSIILVIGSIIA 127 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 + +GLN G+DF GG+ V + V+ V + L D Q + L+RL Sbjct: 128 IAVNGLNLGLDFTGGVSADVRYEQSVEQGDVVTALADNGFDDAVVQYLGTSQELLIRLPP 187 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683 Q S + + + + I N I+G ++ E+ ++ ++++ ML Y Sbjct: 188 Q---SDNIDGLNNSLSEALALPNNDVEISNVNIIGSQVGNEIYLSSVMSIVLALACMLGY 244 Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 + +RF++ ALGA+ +L D T+G FALFG F+LT +AA+L LIGYS+ND +VVYDR Sbjct: 245 VALRFQFKLALGAVLSLFHDAIVTIGVFALFGFPFDLTVLAAILALIGYSLNDTIVVYDR 304 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 +R+N + IS R ID S+ ETL R++ T + VL M GG + F+ + Sbjct: 305 IRENFRR-VRGISPRQTIDLSLTETLRRTIMTISTVLLVVLAMLFLGGDGLFWFSAALFI 363 Query: 804 GIVVAASSSIFIAAPILLFIYDWR 827 G++ SS +IA+ I L + R Sbjct: 364 GLLAGTYSSTYIASSIPLAMGLSR 387 >gi|315124573|ref|YP_004066577.1| protein export protein SecF [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018295|gb|ADT66388.1| protein export protein SecF [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 302 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 155/285 (54%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FMR RF + +S + SI LL+ GL YGIDF GG + + ++ +R LE Sbjct: 10 YDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 G + G + + + + + ++ ++VGP Sbjct: 70 KQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ + +S IA+LIYI +RF+W FAL AI + I D+ TLG +LF I+ N Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AAVLT++GYS+ND ++++DR+R+ +K + +I++S++ TL R+V TS Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSRTVLTSGLT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +V+ + +GG +I F++ + GI+ SSIF+A+P LL+ Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPTLLWFK 291 >gi|254293772|ref|YP_003059795.1| protein-export membrane protein SecF [Hirschia baltica ATCC 49814] gi|254042303|gb|ACT59098.1| protein-export membrane protein SecF [Hirschia baltica ATCC 49814] Length = 327 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 162/302 (53%), Gaps = 13/302 (4%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM+ RF +S++ I SI ++ T GLN+GIDF GG+ + + + VD+ +R Sbjct: 10 PKIGFMKLRFGAFALSLVLIIASIAMVATRGLNFGIDFVGGVVIEIETSTKVDIGEIRDA 69 Query: 598 LESLQIGDISFQNFDGE------------KNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 L L + + A + + + Sbjct: 70 LSELDLDGVEVTEIKDNLVAEETGTTIALIKTKAPDAEGEAVEAAVQATASGILSALKDK 129 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + E VGPK+S EL++ GI+ ++++ ML+YIW RF+W F++GA+ LI D+ Sbjct: 130 FGDIEERRKEAVGPKVSGELLQDGIMALVVALGLMLLYIWFRFQWQFSIGAVLALIHDVI 189 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T+G FA+ EFNL+ +AA+LT++GYS+ND VVVYDR+R+ M+ Y +S D+ID SI Sbjct: 190 LTIGMFAVTQFEFNLSTIAALLTIVGYSMNDTVVVYDRVREEMRRY-KKMSDTDVIDMSI 248 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 N TL R++ TS +++ + + GG V+ F+ M +G+ + SSIFIA+ ILL Sbjct: 249 NRTLSRTLLTSGTTLLALFSIFLLGGEVLRGFSFAMIWGVFIGTYSSIFIASAILLHTGL 308 Query: 826 WR 827 R Sbjct: 309 RR 310 >gi|37527758|ref|NP_931103.1| preprotein translocase subunit SecD [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787194|emb|CAE16274.1| Protein-export membrane protein SecD [Photorhabdus luminescens subsp. laumondii TTO1] Length = 615 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 164/537 (30%), Positives = 280/537 (52%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + + LGLDLRGG H ++EVD + + + Sbjct: 100 VVALNLAPATPTWLSKVGAE---------PMKLGLDLRGGVHFLMEVDMETALGKLQEQN 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LR+ L+++GI + R+I N + + F D + + + +T + Sbjct: 151 IDGLRTDLREKGIPYSTARKIDNYGVEIRFRDEKARSEAENYLTGRHR-----------D 199 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + + V+S + S+A++Q++ I+R R++Q+G++E +QR G+ RI+++ Sbjct: 200 LVFSIGSNNTLKAVMSDERQREARSYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVE 259 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V G DGN ++ +V Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTGIDSTAATSGRVPGDSEVKSTRDGNPVVLYKRV 319 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302 ++G H+ + + D P V IS D G T+DN+GKP+A + Sbjct: 320 ILTGDHITDSIPDTDEYG-NPQVSISLDSAGGTAMSNFTKDNVGKPMATLFVEYKDSGKK 378 Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + Q +I+G A L+ +LRAG+L + IVEE Sbjct: 379 DANGRSVLVKHEEVINIANIQTRLGNSFRITGLSNATEARQLSLLLRAGALIAPIQIVEE 438 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LG +I +G A + GL+ +LFM++ Y K+G++A ++ N++L + ++SLL Sbjct: 439 RTIGPTLGLQNIEQGLEACLWGLIASILFMVIYYRKFGVIASSALLANLVLIVGIMSLLP 498 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R ++V ++ G+ A+S+I D+N+ Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANL 558 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI V+L+ G G+++GFAIT + + SMFTAI R ++ + K++K + I Sbjct: 559 TTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRGIVNLLYGGKRIKKLSI 615 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 96/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N S+ + N + L G S A + + Sbjct: 369 FVEYKDSGKKDANGRSVLVKHEEVINIANIQTRLGNSFRITGLSNATEARQLSLLLRAGA 428 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ I ++ F + A + L+ ++ Sbjct: 429 LIAPIQIVEERTIGPTLGLQNIEQGLEACLWGLIASILFMVIYYR-KFGVIASSALLANL 487 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ + + I + Sbjct: 488 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHE 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++ I+ + + G I FAI + G+ + ++I I+ + Sbjct: 545 GYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRGIVNLL 604 Query: 824 YDWRAKNA 831 Y + Sbjct: 605 YGGKRIKK 612 Score = 38.5 bits (87), Expect = 5.2, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 27/150 (18%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ IGLL ALPN + +++ Sbjct: 4 RYPLWKYLMLIAAILIGLLYALPNLYGEDPA-------------------------VQIT 38 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD-KVTLFLQ 120 + + ++ + L+K I S+ I F +S + + V+ Sbjct: 39 GARGIAAS-EQTLVQIHNVLEKNQIASKSIALENGAILARFDNSDIQLRAREALVSTLGD 97 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 LN+ P ++ E + Sbjct: 98 QYVVALNLAPATPTWLSKVGAEPMKLGLDL 127 >gi|258626960|ref|ZP_05721762.1| protein-export membrane protein SecD [Vibrio mimicus VM603] gi|258580784|gb|EEW05731.1| protein-export membrane protein SecD [Vibrio mimicus VM603] Length = 617 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 153/523 (29%), Positives = 276/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEESFRSDLRDEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+R + + + ++ D+ + + D T + Sbjct: 164 RYRSIRPLSDAVEVTLRDAEQLSQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 INQATIQSALGRNFRITGIDSPSEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRINKLSI 617 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPSEAHNLALLLRAGA 430 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLM 606 Query: 824 YDWRAKNA 831 Y + N Sbjct: 607 YGGKRINK 614 Score = 39.3 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ I L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVMFTIAIAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S L K + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTSALDKAHLSKKSIALENGSILVRFNDTDTQISARDIISEAL 95 >gi|51102917|gb|AAT96066.1| SecF [Pseudomonas viridiflava] Length = 303 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 161/288 (55%), Gaps = 5/288 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 1 MKRTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVR 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 L + Q+F + LVR+ + Q + + + ++ E Sbjct: 61 QELVQAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKSGADNPAVVKRVE 116 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F Sbjct: 117 FVGPQVGEELRDQGGIGMLLALGGVLIYLAFRFQWKFAVGAIVSLIHDVVVTMGILSFFQ 176 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 I F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ T Sbjct: 177 ITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTMAT 235 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 S++ ++++ + V+GG + F+I + G++ SSI+IA +L+++ Sbjct: 236 SISTLLAIVALWVFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|197363359|ref|YP_002142996.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197094836|emb|CAR60369.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 576 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 294/524 (56%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 65 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 124 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F DS+ ++ + L + ++ + + ++ Sbjct: 125 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 173 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 174 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 233 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 234 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 293 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 294 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 352 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 353 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 412 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 413 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 472 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 473 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 532 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 533 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 576 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + L+ ++ +G +L Sbjct: 401 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 459 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + I++ Sbjct: 460 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 516 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 517 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 570 >gi|300703079|ref|YP_003744681.1| sec/yeg protein translocase auxillary subunit [Ralstonia solanacearum CFBP2957] gi|299070742|emb|CBJ42037.1| SecYEG protein translocase auxillary subunit [Ralstonia solanacearum CFBP2957] Length = 322 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 164/305 (53%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S L I ++ LF +GL+ ++F GG + V + D Sbjct: 1 MEFFRIRRDIPFMKHALAFNAVSFLTFIAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L VR+++E L D QNF ++ ++RL + G A + V +T P Sbjct: 61 LPKVRADVEKLGYADAQVQNFGTSRDVMIRLPLKNGPDGKPIASAVQSQQVMSALTADTP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G++ ++ I ++IY+ IRF+W FA+ I + DI Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + Y +S ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MSTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + VL M V+GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|323524786|ref|YP_004226939.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1001] gi|323381788|gb|ADX53879.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1001] Length = 316 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 88/298 (29%), Positives = 154/298 (51%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS+L + ++ L GL+ ++F GG + V Sbjct: 1 MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLVHRGLHLSVEFTGGTVIEVQYPGAAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF ++ L+RL + G + AQ + V + P Sbjct: 61 LDPVRNTLNKLGYADAQVQNFGTSRDVLIRLPLKHGLTSAQQS--DQVMGALKTDTPQVQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + + ++IY+ RF+W +A+ + + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVVGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ ++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVIEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T + VL M ++GG + FA+ + GI+ SS+F+AA + ++ R Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKRE 295 >gi|270263543|ref|ZP_06191812.1| hypothetical protein SOD_e01670 [Serratia odorifera 4Rx13] gi|270042427|gb|EFA15522.1| hypothetical protein SOD_e01670 [Serratia odorifera 4Rx13] Length = 615 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 167/538 (31%), Positives = 282/538 (52%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 99 FVVALNLAPATPAWLAMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 149 Query: 73 YSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+++GI S+R+ N + + F D ++ +T + Sbjct: 150 TMDTLRSELREKGIPYASIRKLDNNGVEVRFRDDAARDQAISYITPR-----------QR 198 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 +L + L+ + + +A++Q++ I+R R++Q+G++E +QR GS RI++ Sbjct: 199 DLVLSANGANTLKASLTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVV 258 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V N G +G ++ + Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNTNADATAAANGRVPGDSEVKNTREGQPVVLYKR 318 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T++ D +P V+IS D G T+DNIGKP+A + + Sbjct: 319 VILTGDHITDSTSSTDEYN-QPQVNISLDSAGGTSMSNFTKDNIGKPMATLFVEYKDSGK 377 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 Q+ +I+G A L+ +LRAG+L + IVE Sbjct: 378 KDANGRAILVKQEEVINVANIQSRLGNSFRITGIGNPNEARQLSLLLRAGALIAPIQIVE 437 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A + GLV ++FM+V Y K+G++A ++ N++L + ++SLL Sbjct: 438 ERTIGPTLGQQNITQGLEACLWGLVASIVFMVVWYRKFGMIATTALVANLVLIVGVMSLL 497 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE + +S+ ++ G+ A+S+I D+N Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSIQQAIHEGYKGAFSSIVDAN 557 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 IT LI ++L+ G G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 558 ITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 615 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 81/177 (45%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + ++ I +G+ + +A ++++ + ++ F + A T L+ ++ +G +L Sbjct: 440 TIGPTLGQQNITQGLEACLWGLVASIVFMVVWYR-KFGMIATTALVANLVLIVGVMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ +K S + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSIQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+ + ++I I+ +Y + N Sbjct: 556 ANITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINK 612 Score = 42.4 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 26/114 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ +GLL ALPN + + Sbjct: 4 RYPLWKYLMLIVVIIVGLLYALPNLYGEDPA---------------------VQIT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115 L L + I S+ I F D + + + Sbjct: 42 GVAASETTLDQVRTVLEK----DNIASKSIALENGAILARFKDPDVQLRAREAL 91 >gi|51102954|gb|AAT96102.1| SecF [Pseudomonas viridiflava] Length = 303 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 160/288 (55%), Gaps = 5/288 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 1 MKRTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVR 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 L + Q+F + LVR+ + Q + + + ++ E Sbjct: 61 QELVEAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKSGADNPAVVKRVE 116 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F Sbjct: 117 FVGPQVGEELRDQGGIGMLLALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQ 176 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 I F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ T Sbjct: 177 ITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTMAT 235 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 S++ ++++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 236 SISTLLAIVALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|325981736|ref|YP_004294138.1| protein-export membrane protein SecD [Nitrosomonas sp. AL212] gi|325531255|gb|ADZ25976.1| protein-export membrane protein SecD [Nitrosomonas sp. AL212] Length = 696 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 164/505 (32%), Positives = 282/505 (55%), Gaps = 20/505 (3%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 I N LP S + + + + LGLDLRGG H +L VD + + L YS ++RS Sbjct: 99 YIIALNLLPNSPR--WLTNLGALPMYLGLDLRGGVHFMLAVDMEGALEKSLDRYSIDIRS 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+++ I + + K+ + F D + ++ D N+ Sbjct: 157 TLREKRISYTGLEKQGKKLVIKFRDIESRSKAEAELKSNF--------EDFTLNIEDVDN 208 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + + ++ A+ Q++ +R R++++G++E IQ+ G+ R+++QLPG QD Sbjct: 209 RYHLIAAIKPEVQIRMQDSAVMQNITTLRNRVNELGVAEPIIQKAGADRVIVQLPGVQDT 268 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-----RDSDGNQYLVEDKVEISGIHL 254 ++ + +LG TA + V + + G + ++ G+ LV+ +V ++G + Sbjct: 269 AKAKDILGRTATLEVRMVDDEHDLDAALRGRVPVGTELHQERGGSPILVKKQVLLTGERI 328 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQ 310 A F K ++P V I+ D G+R F ++TR+N+G+ + V+TAPVI + Sbjct: 329 TDAQPGF-DKDNQPAVHINLDNHGSRIFKQLTRENVGRRMAILLIEKNTAEVVTAPVIRE 387 Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370 I G+ QISG T A +A +LRAG+L ++I+EER +G LG+D+I +G + + Sbjct: 388 EIGGGRVQISGRMTSLEARDVALLLRAGALAAPMDIIEERTIGPSLGADNIARGFNSTLY 447 Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430 G + + +F++V Y +G+++ ++ N++L + LLS++ ATLTLP +A + L +G+A+D+ Sbjct: 448 GFLAVAIFIMVYYTAFGVISAIALGFNLLLLVGLLSIMQATLTLPGMAALALTVGMAIDA 507 Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490 N+L+NERIR+E R S ++ G+ RA+ TI DSNIT LIA + LF FG G V+GFA+ Sbjct: 508 NVLINERIRDELRAGASPQLAIHAGYERAFGTILDSNITTLIAGIALFAFGSGPVKGFAV 567 Query: 491 TMGLSILISMFTAISIVRAMMIFII 515 + L IL S+FTA+ + RAM+ F+ Sbjct: 568 VLCLGILTSVFTAVFVSRAMVNFMY 592 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 87/208 (41%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + + I +GP + + I +G + +A+ Sbjct: 394 VQISGRMTSLEARDVALLLRAGALAAPMDIIEERTIGPSLGADNIARGFNSTLYGFLAVA 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 I+I + + F + + L ++ +G ++ L +AA+ +G +++ V++ Sbjct: 454 IFIMVYYT-AFGVISAIALGFNLLLLVGLLSIMQATLTLPGMAALALTVGMAIDANVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R ++ S + I G + +++ I+ + + +G + FA+ + Sbjct: 513 ERIRDELRA---GASPQLAIHAGYERAFGTILDSNITTLIAGIALFAFGSGPVKGFAVVL 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + +++F++ ++ F+Y K Sbjct: 570 CLGILTSVFTAVFVSRAMVNFMYGNLRK 597 >gi|110833364|ref|YP_692223.1| preprotein translocase subunit SecD [Alcanivorax borkumensis SK2] gi|110646475|emb|CAL15951.1| Preprotein translocase SecD subunit [Alcanivorax borkumensis SK2] Length = 637 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 156/524 (29%), Positives = 270/524 (51%), Gaps = 45/524 (8%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + ++LGLDLRGG H +L+VD D V ++ + + L+ G+ Sbjct: 115 NLAATTPQWLRDIGASPMNLGLDLRGGVHFLLQVDMDSVVKSRMEAWEGTAKLTLRDAGV 174 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + +F D + + L + + I + Sbjct: 175 RYREVSVDGTTLIATFGDQVAADAARAPLRQALDKLAMQ----------PAGDSPRIVMT 224 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L++ + ++ +A++Q+ + +R++++G++E+ +QR G+ RI++QLPG QD + R++L Sbjct: 225 LNETALKEMQDYAVDQNRTALNKRVNELGVAEAVVQRQGADRIVVQLPGIQDAATARRIL 284 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDSDGNQYLVEDKVEISGIHLNGATA 259 G TA + F V + S G+ + +G + +G + A Sbjct: 285 GRTATLEFRLVDNSVSSARLRSGMAPPGLEFFPFKGQEGRIVALNKSSIATGDQVIDAKM 344 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------A 295 FD + +P V+++ D GARR VT N+G P+ Sbjct: 345 GFDQQNGQPEVNVTLDSDGARRMQRVTGKNVGNPMGVLFIETKTDVKKVIDEDGNSVEQM 404 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 + + Q+ + +I+G A LA +LRAGSL ++IVEER VG Sbjct: 405 TSSTDKYVINVATIQSTLGSRFRITGLDNPAEASELALLLRAGSLAAPVSIVEERTVGPS 464 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTL 414 LG+++I G ++ GL L++ FM++ Y +GL+A+ ++ N+++ + ++SL+ AT+TL Sbjct: 465 LGAENIEAGLKSMALGLALVLAFMVLWYKVFGLIANVALLGNLVIIVGVMSLIPGATMTL 524 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL +G+AVD+N+L+ ERIRE+ R+ S +++ G++RA++TI D+NIT LI Sbjct: 525 PGIAGIVLTVGMAVDANVLIFERIREDLRRGLSPRQAIEEGYARAFTTILDANITTLIVA 584 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 V+LF G G+V+GFA+T+ + IL SMFTAI RAM I Sbjct: 585 VILFAAGTGSVQGFAVTLFIGILTSMFTAIIGTRAMAEMIYGRG 628 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 + G + + + + +++E + + + +++ Sbjct: 377 NPMGVLFIETKTDVKKVIDEDGNSVEQMTSSTDKYVINVATIQSTLGSRFRITGLDNPAE 436 Query: 634 VLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 E + + + +I VGP + E I G+ + + +L ++ + +K F Sbjct: 437 ASELALLLRAGSLAAPVSIVEERTVGPSLGAENIEAGLKSMALGLALVLAFMVLWYKV-F 495 Query: 693 ALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 L A L+ ++ +G +L G L +A ++ +G +V+ V++++R+R++++ Sbjct: 496 GLIANVALLGNLVIIVGVMSLIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREDLR-- 553 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811 +S R I++ + ++ I + + G + FA+ + GI+ + + Sbjct: 554 -RGLSPRQAIEEGYARAFTTILDANITTLIVAVILFAAGTGSVQGFAVTLFIGILTSMFT 612 Query: 812 SIFIAAPILLFIYDWRAK 829 +I + IY A+ Sbjct: 613 AIIGTRAMAEMIYGRGAR 630 >gi|309781304|ref|ZP_07676040.1| protein-export membrane protein SecF [Ralstonia sp. 5_7_47FAA] gi|308919717|gb|EFP65378.1| protein-export membrane protein SecF [Ralstonia sp. 5_7_47FAA] Length = 323 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 90/305 (29%), Positives = 162/305 (53%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S L I ++ LF GL+ ++F GG + V + D Sbjct: 1 MEFFRIRRDIPFMKHALILNALSFLTFIAAVFFLFHKGLHLSVEFTGGTVMEVAYTQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L +R ++E L D QNF ++ ++RL + G A + V + + P Sbjct: 61 LPKIRGDVEKLGYADAQVQNFGTSRDVMIRLPLKTGPDGKPIASAVQSQQVMTALNAVNP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + +Q E VGP++ +EL G++ ++ + ++IY+ IRF+W FA+ + + D+ Sbjct: 121 DAKLQRVEFVGPQVGKELATDGLLALLFVVVGIVIYLSIRFEWKFAVAGVIANLHDVVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +A VL ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + V+ M V+GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTIITHGSTEMMVVSMLVFGGPTLHYFAVALTIGILFGIYSSVFVAAALCMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|26987572|ref|NP_742997.1| preprotein translocase subunit SecF [Pseudomonas putida KT2440] gi|24982247|gb|AAN66461.1|AE016275_6 protein-export membrane protein SecF [Pseudomonas putida KT2440] Length = 302 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 158/287 (55%), Gaps = 5/287 (1%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R +++L ++ ++ + GLN+G+DF GG + + RP D+ VR+ Sbjct: 1 MKTINFMGVRNVAFAVTVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADVKAVRA 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + Q+F + LVR+ + + ++ E Sbjct: 61 ELVESGFNEAVVQSFGATTDLLVRMPGDDPMLGNKVAEALQ----KAGGDNPAKVKRVEF 116 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VGP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ TLG + F I Sbjct: 117 VGPQVGEELRDQGGIGMLLALGGILIYLAFRFQWKFAVGAIVSLIHDVVVTLGILSFFQI 176 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ S + I+ S +TL R+V TS Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINVSTTQTLLRTVATS 235 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ +++ + +GG + F++ + G++ SSI+IA +L+++ Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282 >gi|296386925|ref|ZP_06876424.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa PAb1] Length = 1038 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L ++++P+ P + Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + + + IT++F + +V LQ Sbjct: 54 AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + S I+ D + ++ Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 DP++L T +S N G Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++G Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + A L + S Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 LS +A + + ++ + + +G + V Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++S++ + ++ F V G + M+K Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 +++ + Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q I+ Q + + +++ + + + + Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S R+ KS+ Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M LPMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + + G + ++G + + PG S K Sbjct: 790 VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + + L Sbjct: 850 LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L ++ G+ ++ +LT IG S + +++ + ++ L+ + Sbjct: 907 GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814 ++ L V TS+A + V+P+A+ G + + G+V A +IF Sbjct: 964 EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018 >gi|167586181|ref|ZP_02378569.1| preprotein translocase subunit SecF [Burkholderia ubonensis Bu] Length = 316 Score = 211 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 93/306 (30%), Positives = 160/306 (52%), Gaps = 6/306 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR +S++ + ++ L GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLLHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF +N L+RLQ + G + AQ + V + P T Sbjct: 61 LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKQGLTSAQQS--DQVMTALKAQSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA+L ++GYSVN+ VV++DR+R+ + +S +++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA-- 828 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGILFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 829 -KNARI 833 K ++ Sbjct: 298 IKEKKL 303 >gi|291616518|ref|YP_003519260.1| SecD [Pantoea ananatis LMG 20103] gi|291151548|gb|ADD76132.1| SecD [Pantoea ananatis LMG 20103] Length = 615 Score = 211 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 162/524 (30%), Positives = 284/524 (54%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D ++ + +D LRS L+++ I Sbjct: 104 NLAPATPRWLTLLAAQPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNADSLRSDLREKNI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++ +I N + + F D+ ++ ++ Q ++ ++ + + Sbjct: 164 PYTNVNKIANYGVEIRFRDAASRDAAVKWLSSRHQ-----------DLVINSSGDDALRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++ Sbjct: 213 TMTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + G DG ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTSVDPTAAASGRVPGDSEVKDMRDGRPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 + ++P V+IS D G T+DNIGKP+A + + Sbjct: 333 -MDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 391 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q+ +I+G A L+ +LRAG+L + IVEER +G +G +I Sbjct: 392 VINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNIT 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GLV +LFM++ Y K GL+A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 452 QGLEACLWGLVASILFMVLYYKKVGLIATSALLANLVLIVGIMSLLPGATLTMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI V+L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVVILYAIG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT + I SMFT+I RA++ + K++K + I Sbjct: 572 TGSIKGFAITTAIGIATSMFTSIVGTRAIINLMYGGKRIKKLSI 615 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 79/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + ++ I +G+ + +A ++++ + +K L A + L+ ++ +G +L Sbjct: 440 TIGPTMGQQNITQGLEACLWGLVASILFMVLYYK-KVGLIATSALLANLVLIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ ++ S + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI A GI + +SI I+ +Y + Sbjct: 556 ANVTTLIKVVILYAIGTGSIKGFAITTAIGIATSMFTSIVGTRAIINLMYGGKRIKK 612 >gi|327392949|dbj|BAK10371.1| protein-export membrane protein SecD [Pantoea ananatis AJ13355] Length = 604 Score = 211 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 162/524 (30%), Positives = 284/524 (54%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D ++ + +D LRS L+++ I Sbjct: 93 NLAPATPRWLTLLAAQPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNADSLRSDLREKNI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++ +I N + + F D+ ++ ++ Q ++ ++ + + Sbjct: 153 PYTNVNKIANYGVEIRFRDAASRDAAVKWLSSRHQ-----------DLVINSSGDDALRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++ Sbjct: 202 TMTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + G DG ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTSVDPTAAASGRVPGDSEVKDMRDGRPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 + ++P V+IS D G T+DNIGKP+A + + Sbjct: 322 -MDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 380 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q+ +I+G A L+ +LRAG+L + IVEER +G +G +I Sbjct: 381 VINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNIT 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GLV +LFM++ Y K GL+A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 441 QGLEACLWGLVASILFMVLYYKKVGLIATSALLANLVLIVGIMSLLPGATLTMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI V+L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVVILYAIG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+++GFAIT + I SMFT+I RA++ + K++K + I Sbjct: 561 TGSIKGFAITTAIGIATSMFTSIVGTRAIINLMYGGKRIKKLSI 604 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 79/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + ++ I +G+ + +A ++++ + +K L A + L+ ++ +G +L Sbjct: 429 TIGPTMGQQNITQGLEACLWGLVASILFMVLYYK-KVGLIATSALLANLVLIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ ++ S + I + V Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI A GI + +SI I+ +Y + Sbjct: 545 ANVTTLIKVVILYAIGTGSIKGFAITTAIGIATSMFTSIVGTRAIINLMYGGKRIKK 601 >gi|207721606|ref|YP_002252045.1| protein-export membrane [Ralstonia solanacearum MolK2] gi|206586767|emb|CAQ17352.1| protein-export membrane [Ralstonia solanacearum MolK2] Length = 322 Score = 211 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 164/305 (53%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S L I ++ LF +GL+ ++F GG + V + D Sbjct: 1 MEFFRIRRDIPFMKHALAFNAVSFLTFIAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L VR+++E L D QNF ++ ++RL + G A + V +T P Sbjct: 61 LPKVRADVEKLGYADAQVQNFGTSRDVMIRLPLKNGPDGKPIASAVQSQQVMSALTADTP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G++ ++ I ++IY+ IRF+W FA+ I + DI Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + VL M V+GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|167571176|ref|ZP_02364050.1| preprotein translocase subunit SecD [Burkholderia oklahomensis C6786] Length = 620 Score = 211 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 164/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTLLRDKGIRDGGVNRVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDAAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 ++V G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVVWGFVAIAVFMIAYYMLFGIVSVVGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRNGASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 GFAI + IL SMF+A+ R ++ +K Sbjct: 560 GFAIVHCIGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 87/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G V+ +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGFHSVVWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGIVSVVGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + FAI G Sbjct: 512 REELR---NGASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAIVHCIG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|254225008|ref|ZP_04918622.1| protein-export membrane protein SecD [Vibrio cholerae V51] gi|125622395|gb|EAZ50715.1| protein-export membrane protein SecD [Vibrio cholerae V51] Length = 617 Score = 211 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D + + Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANVALMANL 489 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 606 Query: 824 YDWRAKNA 831 Y + N Sbjct: 607 YGGKRINK 614 Score = 40.1 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + + L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + L K + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDIISEAL 95 >gi|119775325|ref|YP_928065.1| preprotein translocase subunit SecF [Shewanella amazonensis SB2B] gi|119767825|gb|ABM00396.1| protein translocase subunit secF [Shewanella amazonensis SB2B] Length = 315 Score = 211 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 174/299 (58%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ +I F+R +S + + S+ L T G+N+G+DF GG + + ++PV Sbjct: 1 MFQILDIKGSINFLRHAAPISILSAILVVGSLVSLATRGINWGLDFTGGTVVEMEFSKPV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+NL + QNF ++ LVRLQ + G + +V K TE+ P Sbjct: 61 NLETLRNNLTEPLVAGAVVQNFGSSRDVLVRLQVREGVK--SDAQVRVVMAKATELDPEV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 T + E VGP++ +EL +G + V+++ I +LIY+ RF+W A G++ L D+ TLG Sbjct: 119 TQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLAAGSVAALAHDVIVTLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ +EF+LT +A +LT++GYS+ND +VV+DR+R+N + ++++ SI +T+ Sbjct: 179 VFSVLQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKG-TPEEVVNNSITQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T+ I+V+ + + GG++I FA + GIVV SSI++A+ + + + R Sbjct: 238 SRTIITTGTTLITVVALFLKGGTLIHGFATALLLGIVVGTYSSIYVASYLAIRLGINRE 296 >gi|241766128|ref|ZP_04764037.1| protein-export membrane protein SecF [Acidovorax delafieldii 2AN] gi|241363832|gb|EER59162.1| protein-export membrane protein SecF [Acidovorax delafieldii 2AN] Length = 316 Score = 211 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 165/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS + ++ L T GL+ ++F GG + V ++P + Sbjct: 1 MEFFRIRKDIPFMKHALVFNAISFITFALAVFFLLTRGLHLSVEFTGGTVMEVAYSQPAE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ VR + S+ D+ QNF ++ ++RL Q G + AQ E V + P T Sbjct: 61 LAKVRETVASMGYPDVQVQNFGTARDVMIRLPVQKGVTSAQQS--EQVIAALKAGDPAVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL+ G++ + + + +++Y+ RF+W F + AI + D+ LGF Sbjct: 119 LRRTEFVGPQVGEELVHGGLMALAMVVVGIVVYLAFRFEWKFGVAAIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M +GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297 Query: 831 ARI 833 ++ Sbjct: 298 VKV 300 >gi|153001320|ref|YP_001367001.1| preprotein translocase subunit SecF [Shewanella baltica OS185] gi|151365938|gb|ABS08938.1| protein-export membrane protein SecF [Shewanella baltica OS185] Length = 315 Score = 211 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 165/291 (56%), Gaps = 3/291 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + F+R +S + + S+ L T+G+N+G+DF GG + + PVDL+ +R Sbjct: 9 HTVNFLRHALPISIMSAVLVLGSLVSLATNGINWGLDFTGGTVVEMEFTNPVDLNALRVQ 68 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + QNF ++ LVRLQ + G ++ V + ++ P + E V Sbjct: 69 LTTPDSEGAIVQNFGSSRDVLVRLQVKEGVRSDVQ--VKSVMEAAQKVDPQVQQKRVEFV 126 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ +EL +G + V+++ I ++IY+ RF+W A G++ L D+ TLG F++F +E Sbjct: 127 GPQVGKELAEQGALAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSVFQLE 186 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +A +LT++GYS+ND +VV+DR+R+N S ++++ SI +T+ R++ T+ Sbjct: 187 FDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKS-DPEEVVNTSITQTMSRTIITTG 245 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 246 TTLVVVVALFLKGGTMIHGFATALLMGIFVGTYSSIYVASFLAIKLGINRE 296 >gi|241664133|ref|YP_002982493.1| preprotein translocase subunit SecF [Ralstonia pickettii 12D] gi|240866160|gb|ACS63821.1| protein-export membrane protein SecF [Ralstonia pickettii 12D] Length = 323 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 90/305 (29%), Positives = 162/305 (53%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S L I ++ LF GL+ ++F GG + V + D Sbjct: 1 MEFFRIRRDIPFMKHALILNALSFLTFIAAVFFLFHKGLHLSVEFTGGTVMEVAYTQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L +R ++E L D QNF ++ ++RL + G A + V + + P Sbjct: 61 LPKIRGDVEKLGYADAQVQNFGTSRDVMIRLPLKTGPDGKPIASAVQSQQVMTALNAVNP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 + +Q E VGP++ +EL G++ ++ + ++IY+ IRF+W FA+ + + D+ Sbjct: 121 DAKLQRVEFVGPQVGKELATDGLLALLFVVVGIVIYLSIRFEWKFAVAGVIANLHDVVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +A VL ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + V+ M V+GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTIITHGSTEMMVVSMLVFGGPTLHYFAVALTIGILFGIYSSVFVAAALCMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|167645301|ref|YP_001682964.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Caulobacter sp. K31] gi|167347731|gb|ABZ70466.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Caulobacter sp. K31] Length = 1047 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 72/687 (10%), Positives = 186/687 (27%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + ++P+ P + + Sbjct: 8 RPIFAWVIAIVIMLAGALAI-----RTLPVAQYPAIAPP---------QVAVSAMYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + +TL+F + +V LQ Sbjct: 54 AKTLEDSVTQVIEQKMKGIDGLDYMSSTSDSTGAATVTLTFKAGTDIDIAQVQVQNKLQT 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L + ++ L +++ D + + + + I D + + Sbjct: 114 ATALLPQEVQQQGLTVAKSARNFLLVIGLYSDNPKTTSNDLTDYIASNIQDPLSRVDGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + +S N G Sbjct: 174 DVQLFGAQ-YAMRIWLDPNKLASYSLTPSDVSAAIRAQNAQVSAGQLGGTPNLPGTALNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I + G + + Sbjct: 233 TITAQSRL-------------QTPEEFENIILKNSQGGAIVYMRDVARVEMGAESYSAAA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T + L IV + S Sbjct: 280 KYNGKPSGGLAIKLAPGANALDTAKAVKAQVDELAKNFPSEYKYIVPYDSTPFVEQSIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV IV+F+ + + L+ ++ + ++ T +L++ G ++ ++ G+V Sbjct: 340 VVKTLMEAIVLVFIVMFLFLQNWRATLIPTIAVPVVLLGTFGVLAMFGYSINTLTMFGLV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + S + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPKEATRKSMNEITGALIGIALVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSIDINP 527 GG R F+IT+ ++++S+ A+ + A+ +++ + + Sbjct: 460 GGSQGVIYRQFSITIVSAMMLSVVVALVLTPALCATMLKPIAKGHMVAETGFFGWFNRSF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + ++ W + + + + + +G + V Sbjct: 520 NDVSGRYQNSVRGILGKSVRWMAIYAAIIVAMGLLFVRLPSAFLPEEDQGFMLTLVQLPP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 L+ ++ + + + F V G +K Sbjct: 580 GATEERTLGVLDQVRSHFMENEKEAVQSVFTVNGFSFSGPGQNAGLAFIRLKNFDERKSA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 + ++ + ++ Sbjct: 640 DLKVPALAGRAMGKFAQIRDAMVFAIV 666 Score = 84.0 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 82/197 (41%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + A ++ + K ++ + E+++ + +++ I M +++ Sbjct: 301 DTAKAVKAQVDELAKNFPSEYKYIVPYDSTPFVEQSIHEVVKTLMEAIVLVFIVMFLFLQ 360 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + T G A+FG N + ++ IG V+D +VV + + Sbjct: 361 ---NWRATLIPTIAVPVVLLGTFGVLAMFGYSINTLTMFGLVLAIGLLVDDAIVVVENV- 416 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMA 802 + +S ++ KS+NE G + ++ +PMA +GG VI F+I + Sbjct: 417 -ERVMSEEGLSPKEATRKSMNEITGALIGIALVLSAVFVPMAFFGGSQGVIYRQFSITIV 475 Query: 803 FGIVVAASSSIFIAAPI 819 ++++ ++ + + Sbjct: 476 SAMMLSVVVALVLTPAL 492 Score = 65.1 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 6/147 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W L I + L I L L G+ ++ +LT +G + + +++ + ++ Sbjct: 892 SWTIPLSVIMVIPLGIVGALLATTLRGLSNDIYFQVGLLTTMGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 +Y + + + ++ L + TS+A VLP+A+ G + + G+ Sbjct: 950 -IYLRTGNLVEATLDAVRIRLRPIIMTSLAFIFGVLPLAISNGAGSGSQHAIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + +IF + + R Sbjct: 1009 LSGTILAIFFVPLFFVLVERIFKAKLR 1035 >gi|121729729|ref|ZP_01682170.1| protein-export membrane protein SecD [Vibrio cholerae V52] gi|147675510|ref|YP_001216228.1| preprotein translocase subunit SecD [Vibrio cholerae O395] gi|153802812|ref|ZP_01957398.1| protein-export membrane protein SecD [Vibrio cholerae MZO-3] gi|153829405|ref|ZP_01982072.1| protein-export membrane protein SecD [Vibrio cholerae 623-39] gi|229513118|ref|ZP_04402584.1| protein-export membrane protein SecD [Vibrio cholerae TMA 21] gi|229530127|ref|ZP_04419517.1| protein-export membrane protein SecD [Vibrio cholerae 12129(1)] gi|254285461|ref|ZP_04960425.1| protein-export membrane protein SecD [Vibrio cholerae AM-19226] gi|121628546|gb|EAX61029.1| protein-export membrane protein SecD [Vibrio cholerae V52] gi|124121637|gb|EAY40380.1| protein-export membrane protein SecD [Vibrio cholerae MZO-3] gi|146317393|gb|ABQ21932.1| protein-export membrane protein SecD [Vibrio cholerae O395] gi|148875125|gb|EDL73260.1| protein-export membrane protein SecD [Vibrio cholerae 623-39] gi|150424323|gb|EDN16260.1| protein-export membrane protein SecD [Vibrio cholerae AM-19226] gi|227012567|gb|ACP08777.1| protein-export membrane protein SecD [Vibrio cholerae O395] gi|229333901|gb|EEN99387.1| protein-export membrane protein SecD [Vibrio cholerae 12129(1)] gi|229350011|gb|EEO14965.1| protein-export membrane protein SecD [Vibrio cholerae TMA 21] Length = 617 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D + + Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 606 Query: 824 YDWRAKNA 831 Y + N Sbjct: 607 YGGKRINK 614 Score = 39.7 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + + L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + L K + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDIISEAL 95 >gi|261252141|ref|ZP_05944714.1| protein-export membrane protein SecD [Vibrio orientalis CIP 102891] gi|260935532|gb|EEX91521.1| protein-export membrane protein SecD [Vibrio orientalis CIP 102891] Length = 607 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 154/524 (29%), Positives = 276/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L++E I Sbjct: 93 NLAPATPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREEKI 152 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + ++ + + D + I+ Sbjct: 153 RYRAIRPAGKEGVEVLLRNAEQLAEAERILEKN--------HPDMLFTTSDSDGRFSITA 204 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 205 TFTEQRLTEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264 Query: 206 LGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G +D DG +++ +V + G + ++ Sbjct: 265 LGATATLEFREVDSKADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILGGQSITD-ASS 323 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + +R NIGK +A V Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMAAFSRQNIGKLMATVFAEYKDSGRRTPEGRVILNKHEE 383 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A++ G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 444 MGIQAMIWGMVAVMLFTLLYYRKFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 503 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ K++ + I Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLAYGGKRINKLSI 607 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 91/213 (42%), Gaps = 5/213 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI +I +A Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQAMIWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F + A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMLFTLLYYR-KFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G I FA Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ GI+ + ++I I+ Y + N Sbjct: 572 VTLSIGILTSMFTAIVGTRCIVNLAYGGKRINK 604 >gi|254479844|ref|ZP_05093092.1| protein-export membrane protein SecF [marine gamma proteobacterium HTCC2148] gi|214039406|gb|EEB80065.1| protein-export membrane protein SecF [marine gamma proteobacterium HTCC2148] Length = 304 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 94/292 (32%), Positives = 161/292 (55%), Gaps = 5/292 (1%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R + S + SI L T LN+G+DF GG + V + DL+ +R Sbjct: 1 MKIIDFMGQRKMALVFSAILLAISIGSLATKQLNWGLDFTGGTLVEVHYSETADLTAIRK 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + +F +K+ L+RL DS ++ ++ E Sbjct: 61 TLGAEGYAGAIVVSFGTDKDVLIRLPKGYSDSEGAQ----LLAGLQRAYSGNVELRRIEF 116 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VGP++ EL +G + ++++ +++YI RF+ FA+GA+ L+ D+ LGFF++ G+ Sbjct: 117 VGPQVGDELREQGGLAMLLALGLVMLYIAFRFQLKFAVGAVVALVHDVLVVLGFFSVTGV 176 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 EF+LT +AA+L +IGYS+ND +VV DR+R+N + + ++I+ S+ ETLGR++ TS Sbjct: 177 EFDLTVLAALLAVIGYSLNDTIVVSDRIRENFRKLRKT-DPVEVINISLTETLGRTLVTS 235 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + + ++ +AV+GG +I +FAI + G+ + SSI++AA LL + + Sbjct: 236 LTTMLVLVALAVFGGEMINAFAIALLVGVFIGTYSSIYVAANALLMMGVSKE 287 >gi|167564030|ref|ZP_02356946.1| preprotein translocase subunit SecD [Burkholderia oklahomensis EO147] Length = 618 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 164/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTLLRDKGIRDGGVNRVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDAAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 ++V G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVVWGFVAIAVFMIAYYMLFGIVSVVGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRNGASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 GFAI + IL SMF+A+ R ++ +K Sbjct: 560 GFAIVHCIGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 87/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G V+ +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGFHSVVWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGIVSVVGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + FAI G Sbjct: 512 REELR---NGASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAIVHCIG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|217972750|ref|YP_002357501.1| preprotein translocase subunit SecF [Shewanella baltica OS223] gi|217497885|gb|ACK46078.1| protein-export membrane protein SecF [Shewanella baltica OS223] Length = 315 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 165/291 (56%), Gaps = 3/291 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + F+R +S + + S+ L T+G+N+G+DF GG + + PVDL+ +R Sbjct: 9 HTVNFLRHALPISIMSAVLVLGSLVSLATNGINWGLDFTGGTVVEMEFTNPVDLNALRVQ 68 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + QNF ++ LVRLQ + G ++ V + ++ P + E V Sbjct: 69 LTTPDSEGAIVQNFGSSRDVLVRLQVKEGVKSDVQ--VKSVMEAAQKVDPQVQQKRVEFV 126 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ +EL +G + V+++ I ++IY+ RF+W A G++ L D+ TLG F++F +E Sbjct: 127 GPQVGKELAEQGGLAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSVFQLE 186 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +A +LT++GYS+ND +VV+DR+R+N S ++++ SI +T+ R++ T+ Sbjct: 187 FDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKS-DPEEVVNVSITQTMSRTIITTG 245 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 246 TTLVVVVALFLKGGTMIHGFATALLMGIFVGTYSSIYVASFLAIKLGINRE 296 >gi|83719918|ref|YP_441823.1| preprotein translocase subunit SecD [Burkholderia thailandensis E264] gi|83653743|gb|ABC37806.1| protein-export membrane protein SecD [Burkholderia thailandensis E264] Length = 673 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 164/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 IVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPG---- 215 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQVPVLLKKQVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608 Score = 47.0 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + S K + LG D L Sbjct: 3 RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + + + + + I + D+ + + D + L Sbjct: 53 VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLNA 101 >gi|290474703|ref|YP_003467583.1| preprotein translocase auxillary membrane protein [Xenorhabdus bovienii SS-2004] gi|289174016|emb|CBJ80803.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Xenorhabdus bovienii SS-2004] Length = 604 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 168/537 (31%), Positives = 289/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + + LGLDLRGG H ++EVD + ++ + Sbjct: 89 VVALNLAPATPLWLSKVGAE---------PMKLGLDLRGGVHFLMEVDMETALSKLQEQN 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LRS L+ +GI S+R++ N + + F D+ + S L + Sbjct: 140 IDSLRSELRDQGILYSSVRKLDNYGVEVRFRDNDARSKA-----------ESYLEPRHRD 188 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + T + +V+S + + + ++A++Q++ I+R R++Q+G++E +QR G+ RI+++ Sbjct: 189 LVFSTGANSTLKVVMSDDRLREARTYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVE 248 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N + + G D N ++ +V Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDQSAAVSGRIPGDSELKYTRDSNPVVLYKRV 308 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302 ++G H+ +T++ D P V+IS D G T+DN+ KP+A + Sbjct: 309 ILTGDHITDSTSSTDEYG-NPQVNISLDGAGGSAMSNFTKDNLQKPMATLFVEYKDSGKK 367 Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 + Q+ +I+G + A LA +LRAG+L + IVEE Sbjct: 368 DANGRSVLVKQEEVINIATIQSRLGNSFRITGIGNLNEARQLALLLRAGALIAPIQIVEE 427 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LG +I +G A + GL+ +LFM++ Y K+GL+A ++ N++L + ++SLL Sbjct: 428 RTIGPTLGLQNIKQGLEACLWGLISSILFMVIYYRKFGLIASSALLANLVLIVGVMSLLP 487 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R ++V ++ G+ A+S+I D+N+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANL 547 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI V+L+ G G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 548 TTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAVVNLLYGGKRINKLSI 604 Score = 139 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N S+ + N ++ L G + + Sbjct: 358 FVEYKDSGKKDANGRSVLVKQEEVINIATIQSRLGNSFRITGIGNLNEARQLALLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I++G+ + I+ ++++ I ++ F L A + L+ ++ Sbjct: 418 LIAPIQIVEERTIGPTLGLQNIKQGLEACLWGLISSILFMVIYYR-KFGLIASSALLANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ + + I + Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++ I+ + + G I FAI + G+ + ++I ++ + Sbjct: 534 GYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAVVNLL 593 Query: 824 YDWRAKNA 831 Y + N Sbjct: 594 YGGKRINK 601 >gi|284123126|ref|ZP_06386898.1| preprotein translocase subunit SecD [Candidatus Poribacteria sp. WGA-A3] gi|283829301|gb|EFC33705.1| preprotein translocase subunit SecD [Candidatus Poribacteria sp. WGA-A3] Length = 546 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 180/551 (32%), Positives = 288/551 (52%), Gaps = 44/551 (7%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLP-QSMLDRFPSAM-PKNRISLGLDLRGGSHLVL 58 M+ + L + I + LP++ + + P +SLGLDL+GG HLVL Sbjct: 1 MKKIRGRLFLVLFLSVISFYLFLPSWPSLYDRVPESVRWLIPPRGVSLGLDLQGGIHLVL 60 Query: 59 EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 EV+E+ V + + ++ L + I + ++ + + + S+ V Sbjct: 61 EVEEERAVEIAVDRAAKAMQDLLTDKDIAFDKIERV-SNLQVQLDLSKDG-----TVEET 114 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 + V + + V+ + + + L + +D++ + AI Q++E IR RIDQ G++E Sbjct: 115 AELVRDEFPSYFQ----VSLDGRTLVVELLGSEVDRIKNAAINQALETIRNRIDQFGVTE 170 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD- 237 +QR G ++IQLPG +DP R + L+ TA + F + +N + + Sbjct: 171 PLLQRQGRKELVIQLPGVKDPERAKSLIQDTALLEFKMLDEDNQPGLGLPLQVQRSEEST 230 Query: 238 ------------------------------GNQYLVEDKVEISGIHLNGATANFDPKTHK 267 YLV ++G L A N+ + + Sbjct: 231 IREKFADKVPEGSEILFESVPDPKGGVPVFSRPYLVRQGAVLTGDVLQDARVNYTEFS-E 289 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 V ++FD GA+ F +T N+GK +A+VLDG V +AP IN+ I G+AQI+GNFT + Sbjct: 290 VYVGVTFDSKGAKEFGRITSANVGKFMAIVLDGTVYSAPRINEPILGGRAQITGNFTTDE 349 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A LA +LRAG+LP + +++ VG LG DSI KG + V++++FM+ Y G Sbjct: 350 ANDLAIVLRAGALPAPMKTIQDLTVGPSLGQDSIEKGLKTTLIAGVIVLIFMVFYYRMSG 409 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 ++AD ++ LN++ L LS L ATLTLP IAGI+L IG+ VDSNIL+ ERIREE R+ + Sbjct: 410 MIADAALVLNLLCLLGALSGLNATLTLPGIAGIILTIGMGVDSNILIFERIREELRQGRP 469 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 V ++D G+ +A+ TI DS++T LI + LF FG G ++GFA+T+ L I I++FTA+ Sbjct: 470 VRLAVDAGYDKAFLTIVDSHVTTLITGLALFLFGTGPIKGFAVTLCLGIAINLFTALIGT 529 Query: 508 RAMMIFIIRYK 518 + + I R K Sbjct: 530 KVVFDLINRRK 540 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 83/180 (46%), Gaps = 5/180 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 VGP + ++ I KG+ +I+ + +LI++ ++ + A L+L++ L Sbjct: 366 MKTIQDLTVGPSLGQDSIEKGLKTTLIAGVIVLIFMVFYYRMS-GMIADAALVLNLLCLL 424 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G + L +A ++ IG V+ +++++R+R+ ++ R +D ++ Sbjct: 425 GALSGLNATLTLPGIAGIILTIGMGVDSNILIFERIREELRQ---GRPVRLAVDAGYDKA 481 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V + + I+ L + ++G I FA+ + GI + +++ I ++ + + R Sbjct: 482 FLTIVDSHVTTLITGLALFLFGTGPIKGFAVTLCLGIAINLFTAL-IGTKVVFDLINRRK 540 >gi|215485489|ref|YP_002327920.1| preprotein translocase subunit SecD [Escherichia coli O127:H6 str. E2348/69] gi|215263561|emb|CAS07891.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli O127:H6 str. E2348/69] Length = 615 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 291/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + + ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTRESQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ + N ++ L G + + + Sbjct: 369 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGA 428 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + + ++++ I +K F L A + LI ++ Sbjct: 429 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANL 487 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 488 ILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDE 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I V+ + G I FAI G+ + ++I I+ + Sbjct: 545 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 604 Query: 824 YDWRAKNA 831 Y + Sbjct: 605 YGGKRVKK 612 >gi|119775326|ref|YP_928066.1| preprotein translocase subunit SecD [Shewanella amazonensis SB2B] gi|119767826|gb|ABM00397.1| protein-export membrane protein SecD [Shewanella amazonensis SB2B] Length = 616 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 162/522 (31%), Positives = 277/522 (53%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + RS L++E I Sbjct: 104 NLAPATPEWLESVGGSPMKLGLDLRGGVHFLMEVDMSEAIRKMEEAKIADFRSQLREERI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + I + F D+ + D + + + + V Sbjct: 164 RYAGVHRTVRGIEIKFRDAETLSQAERFLKSRGN--------DMVFSDISSGDNVVLLAV 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ + Q+ A+ Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 MSEAYLKQIKEEALLQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + +G +++ +V ++G H+ GA +F Sbjct: 276 GATASIEFHMVDEKADVAAAANGRVPAGSELYQRREGGPVVLKKEVMLTGDHITGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA---------------- 305 D + +P V I D G F VT+DNIGKP+A + + Sbjct: 336 DEYS-RPQVAIQLDAKGGEIFSNVTKDNIGKPMATLFIEYKDSGERNPDGSVKMRKIEEV 394 Query: 306 -PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 V G+ + T + LA +LRAG+L ++IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVITGLTHSESQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+V+++ FM+V Y +G++A+ ++ N+I+ + ++S++ A LTLP IAG+VL Sbjct: 455 LQAMIWGMVVVLAFMLVYYRAFGVIANLALCANLIMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNALSTIADANITTFLTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFTAI RA++ + K++K + I Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRAIVNALWGGKRVKKLSI 616 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 94/242 (38%), Gaps = 6/242 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S R+ S+++ I + + + + ++ + Sbjct: 376 DSGERNPDGSVKMRKIEEVISVATIQARLGRNFVITGLTHSESQNLALLLRAGALIAPVS 435 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I +GP + E I G+ +I + +L ++ + ++ F + A L ++ +G Sbjct: 436 IVEERTIGPSLGAENIENGLQAMIWGMVVVLAFMLVYYR-AFGVIANLALCANLIMVVGV 494 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + L Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAL 551 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828 ++ F++ L + G + FA+ + GI + ++I I+ R Sbjct: 552 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNALWGGKRV 611 Query: 829 KN 830 K Sbjct: 612 KK 613 Score = 38.5 bits (87), Expect = 5.5, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 30/134 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W I+ ++ IG ALPN + + V+ Sbjct: 4 KYPMWKNIMVVLVIAIGGFYALPNLFGEDHAVQ----------------------VVATR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF----KENIADKVTL 117 D ++ + L +GIG+ ++ + A++ KE IA+ + Sbjct: 42 GADVTAT----TQSDVSAALTAKGIGIKRSELENGQLLVRVANAEDQLTAKETIAELLGD 97 Query: 118 FLQGVNSKLNVDPK 131 + P+ Sbjct: 98 KYTVALNLAPATPE 111 >gi|153838077|ref|ZP_01990744.1| protein-export membrane protein SecD [Vibrio parahaemolyticus AQ3810] gi|260899304|ref|ZP_05907699.1| protein-export membrane protein SecD [Vibrio parahaemolyticus AQ4037] gi|149748544|gb|EDM59403.1| protein-export membrane protein SecD [Vibrio parahaemolyticus AQ3810] gi|308106623|gb|EFO44163.1| protein-export membrane protein SecD [Vibrio parahaemolyticus AQ4037] gi|328472612|gb|EGF43475.1| preprotein translocase subunit SecD [Vibrio parahaemolyticus 10329] Length = 618 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 156/524 (29%), Positives = 274/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + + RS L+ I Sbjct: 104 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKI 163 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + D +T + D + + Sbjct: 164 RYRAIRPSGKEGVEVLLRDEEQLAEAKRTLTKN--------HPDMNFVESDSNGRYALIA 215 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 216 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275 Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G +D DG +++ +V +SG + ++ Sbjct: 276 LGATATLEFREVDDKADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILSGASITD-ASS 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + ++ NIGK +A V Sbjct: 335 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRKTPEGKVILTKHEE 394 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A V G+V ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 455 MGIQACVWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 514 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GAV+GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 TGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRVDKLSI 618 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI + +A Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACVWGMVA 466 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 467 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G + FA Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 582 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I I+ +Y + Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLLYGGKR 612 Score = 40.1 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVFFAIITAALYALPNIYGEDPAIQVTGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + + L KE + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTTALDKEHLSHKSIALENGSILVRFNDTDTQISARDVISEAL 95 >gi|50120062|ref|YP_049229.1| preprotein translocase subunit SecF [Pectobacterium atrosepticum SCRI1043] gi|49610588|emb|CAG74033.1| protein-export membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 322 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR IS L I SI ++ G N+G+DF GG + + + Sbjct: 5 YNIEQLNHGRKVYDFMRWDTLAFVISGLLIIISIAIMGVRGFNWGLDFTGGTVIEINLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P+DL V+RS+LE+ + QNF ++ +VR+ G S + +++ Sbjct: 65 PIDLDVLRSSLETSGFSEPQVQNFGSSRDVMVRMPPVSG-SENEALGNKVLTVVNDTFQQ 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + + + +A+LIYI +RF+W ALGA+ L D+ T Sbjct: 124 HATVKRIEFVGPSVGSDLAQAGALALFSALVAILIYIGLRFEWRLALGAVLALGHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF +E +LT +A+++++IGYS+NDK+VV DR+R+N + + ++ + S+ + Sbjct: 184 MGLLSLFYVEVDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKIRRGTPY-EITNISLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS +L + V+GG+++ F++ M G+++ SSI++++ + L + R Sbjct: 243 TLHRTIITSATTLAMILILMVFGGALLHGFSLTMFIGVIIGTISSIYVSSALALKLGMTR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|293392575|ref|ZP_06636895.1| protein-export membrane protein SecD [Serratia odorifera DSM 4582] gi|291424977|gb|EFE98186.1| protein-export membrane protein SecD [Serratia odorifera DSM 4582] Length = 604 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 167/537 (31%), Positives = 284/537 (52%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 89 VVALNLAPATPRWLTMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LRS L+++GI S+R++ + + F D+ ++ S L + Sbjct: 140 MDTLRSDLREKGIAYASIRKLDKYGVEVRFRDNAARDQAI-----------SYLTPRQRD 188 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 +L + + L+ + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 189 LVLSSNGNNTLKATLTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 248 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G +G ++ +V Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNTNVDATAAANGRVPGDSEVKDTREGQPIVLYKRV 308 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T+ + ++P V+IS D G T+DNIGKP+A + + Sbjct: 309 ILTGDHITDSTS-TMDEYNQPQVNISLDSAGGNAMSNFTKDNIGKPMATLFVEYKDSGKK 367 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 368 DANGRSVLVKQEEVINVANIQSRLGNSFRITGIGNPNEARQLSLLLRAGALIAPIQIVEE 427 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LG +I +G A + GLV ++FM+V Y K+G++A ++ N++L + ++SLL Sbjct: 428 RTIGPTLGMQNITQGLEACLWGLVASIVFMVVWYRKFGVIATSALVANLVLIVGVMSLLP 487 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE + +SV ++ G+ A+S+I D+NI Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSVQQAIHEGYKGAFSSIIDANI 547 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 80/177 (45%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + +A ++++ + ++ F + A + L+ ++ +G +L Sbjct: 429 TIGPTLGMQNITQGLEACLWGLVASIVFMVVWYR-KFGVIATSALVANLVLIVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ +K S + I + + Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSVQQAIHEGYKGAFSSIID 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+ + ++I I+ +Y + N Sbjct: 545 ANITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|170691384|ref|ZP_02882549.1| protein-export membrane protein SecF [Burkholderia graminis C4D1M] gi|170143589|gb|EDT11752.1| protein-export membrane protein SecF [Burkholderia graminis C4D1M] Length = 316 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 155/302 (51%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS+L + ++ L GL+ ++F GG + V Sbjct: 1 MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLVHRGLHLSVEFTGGTVIEVQYPGAAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR L L GD QNF ++ L+RL + G + AQ + V + P Sbjct: 61 LDPVRGTLNKLGYGDAQVQNFGTSRDVLIRLPLKQGLTSAQQS--DQVMSALKTDTPQVQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + + ++IY+ RF+W +A+ + + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVVGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ ++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVIEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R+V T + VL M ++GG + FA+ + GI+ SS+F+AA + ++ R Sbjct: 238 RTVITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|294677319|ref|YP_003577934.1| protein-export membrane protein SecD [Rhodobacter capsulatus SB 1003] gi|6647805|sp|O33517|SECD_RHOCA RecName: Full=Protein-export membrane protein secD gi|2252773|gb|AAB62801.1| SecD [Rhodobacter capsulatus SB 1003] gi|294476139|gb|ADE85527.1| protein-export membrane protein SecD [Rhodobacter capsulatus SB 1003] Length = 554 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 176/553 (31%), Positives = 286/553 (51%), Gaps = 32/553 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLP-----------------------QSMLDRFPS 37 ++ + W ++ +C L+ A PN ++ +P Sbjct: 2 LQISLWKRLVILGLCLAALITAAPNMFYARVEGHNDAVSAFEKTGAMTETQEAAKAAWPD 61 Query: 38 AMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI--- 94 P ++LGLDLRGG+HL+ EV + + E+R L E + ++R++ Sbjct: 62 WAPSALVNLGLDLRGGAHLLAEVHLGEVYKARMDALWPEVRKVLAAERATIGAIRRVPSP 121 Query: 95 QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154 + ++ + + + V S V + + LS+ Sbjct: 122 EGELRIQIGERAQIARAVEVARTLASPVVSLTGVGQTDYEVT-GEGDTVVFRLSEAEKKA 180 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 ++QS+EI+R+R+D G E TI R G+ RILI++PG L+ L+GTTAK++F Sbjct: 181 TDDRTMQQSLEIVRRRVDAAGTREPTIMREGTDRILIEVPGIGSAQELKDLIGTTAKLTF 240 Query: 215 HKVLPNNSKKGFMF----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 H VL S + + G +L+++ ++G L P V Sbjct: 241 HPVLSTTSNPNAPVASGNELLPDAERQGLYHLLDEVPVVTGDDLTD-ARPTTDDNGAPAV 299 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 F+ GAR F + T +IG+P A+VLDG+V++AP I I G I+G F+IE A Sbjct: 300 SFRFNVSGARAFGDYTAGHIGEPFAIVLDGKVISAPTIQAHIAGGSGIITGRFSIEEATD 359 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LA +LRAG+LP + +EER +G +LG+DS+ G A V G V +V +MI YG +G + Sbjct: 360 LALLLRAGALPAGMTFLEERTIGPELGADSVKAGMVASVIGFVAVVAYMIASYGLFGFFS 419 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 ++F+N+ A++ +G T+TLP IAGIVL IG +VD+N+L+ ER+REE R +S Sbjct: 420 SVALFINIAFIFAVMGAIGGTMTLPGIAGIVLTIGTSVDANVLIYERMREEIRSGKSPVR 479 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510 ++++GF +A S I D+N+T+ +++ +LF G G VRGFA+T + I S+FTAI +VR M Sbjct: 480 AIELGFDKAMSAIIDANVTSFLSSAILFVLGAGPVRGFAVTTMIGIAASIFTAIWVVRLM 539 Query: 511 MIFIIRYKKMKSI 523 ++ +++ K+I Sbjct: 540 IVIWYGWRRPKTI 552 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 88/202 (43%), Gaps = 4/202 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + + T +GP++ + ++ G+V +I +A++ Y+ + Sbjct: 353 SIEEATDLALLLRAGALPAGMTFLEERTIGPELGADSVKAGMVASVIGFVAVVAYMIASY 412 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 F + L ++I G L +A ++ IG SV+ V++Y+RMR+ + Sbjct: 413 GL-FGFFSSVALFINIAFIFAVMGAIGGTMTLPGIAGIVLTIGTSVDANVLIYERMREEI 471 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + S I+ ++ + + ++ +F+S + V G + FA+ GI + Sbjct: 472 R---SGKSPVRAIELGFDKAMSAIIDANVTSFLSSAILFVLGAGPVRGFAVTTMIGIAAS 528 Query: 809 ASSSIFIAAPILLFIYDWRAKN 830 ++I++ +++ Y WR Sbjct: 529 IFTAIWVVRLMIVIWYGWRRPK 550 >gi|146296217|ref|YP_001179988.1| protein-export membrane protein SecF [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409793|gb|ABP66797.1| protein translocase subunit secF [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 309 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 144/302 (47%), Gaps = 9/302 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR- 595 I FM R + +SIL I + G NY IDF GG L + ++ + + Sbjct: 1 MTNIDFMGKRKYFYVLSILVMIIGLISYIIQGFNYDIDFTGGTVLEINLHKVPSAAEIAD 60 Query: 596 -SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--- 651 L G + E + + +T + + + K+ + Sbjct: 61 LEKLTKQITGTQTPIVRKIEDGKKIMINAHEVHGKKRTELSKETRDKLFNAIAKKYNLKK 120 Query: 652 ---QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + + VG +S EL + + VII++I MLIYI IRF++ F A+ L+ D+ L Sbjct: 121 EDLISYQNVGAVVSSELKSQAVWAVIIASILMLIYIAIRFEFKFGTTAVIALLHDLLIML 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + LF I N T +AA+LT++GYS+ND +VV+DR+R+N ++ + +DL++ S+N+T Sbjct: 181 TVYTLFKIPLNSTFIAAMLTVLGYSINDTIVVFDRIRENRRIQGK-MDLKDLVNLSMNQT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +GRS+ T+ I + + + G I FA+P+ GI SSIFIA + Sbjct: 240 IGRSLSTAATVIIVLFVLYLMGVQSIKEFALPLLIGITSGTYSSIFIATALWFDWERSTR 299 Query: 829 KN 830 K Sbjct: 300 KK 301 >gi|312964570|ref|ZP_07778826.1| protein-export membrane protein SecD [Escherichia coli 2362-75] gi|312290804|gb|EFR18681.1| protein-export membrane protein SecD [Escherichia coli 2362-75] Length = 604 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 291/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + + ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTRESQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLSVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ + N ++ L G + + + Sbjct: 358 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + + ++++ I +K F L A + LI ++ Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 477 ILIVGIMSLLPGATLSMPGIAGIVLTLSVAVDANVLINERIKEEL---SNGRTVQQAIDE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I V+ + G I FAI G+ + ++I I+ + Sbjct: 534 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593 Query: 824 YDWRAKNA 831 Y + Sbjct: 594 YGGKRVKK 601 >gi|91781852|ref|YP_557058.1| preprotein translocase subunit SecF [Burkholderia xenovorans LB400] gi|91685806|gb|ABE29006.1| protein translocase subunit secF [Burkholderia xenovorans LB400] Length = 316 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 154/302 (50%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS+L + ++ L GL+ ++F GG + V Sbjct: 1 MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLLHRGLHLSVEFTGGTVIEVQYPGAAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR L L D QNF ++ L+RL + G + AQ + V + P Sbjct: 61 LEPVRGTLGKLGYADAQVQNFGTSRDVLIRLPLKQGYTSAQQS--DQVMSALKADTPQVQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + I ++IY+ RF+W +A+ + + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGVIANLHDVIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + +S ++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKLSVIEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M ++GG + FA+ + GI+ SS+F+AA + ++ R Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|307728502|ref|YP_003905726.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1003] gi|307583037|gb|ADN56435.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1003] Length = 686 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 163/516 (31%), Positives = 271/516 (52%), Gaps = 24/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD +N L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ I + ++ + ++FAD + A +++ + + P + Sbjct: 160 ASDARTLLRDNNIRDGGVNRVNQTVVINFADQATADAAAKQLSRSIGELQWASQNGPDGS 219 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + + T + V A++Q++ + R++++G++E IQ+ G+ RI+++L Sbjct: 220 VQLVGT-------FTPTVQKAVQDAALKQNITTLHNRVNELGVAEPVIQQQGADRIVVEL 272 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L+ ++ Sbjct: 273 PGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQIIF 332 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 333 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRSVSRDNIGKPMAMVLFEKGKGEVLTV 391 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I KG Sbjct: 392 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFH 451 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 ++V G I +FM+ Y +G+++ + +N++L +A+LS+L ATLTLP IA I L +G+ Sbjct: 452 SVVWGFAAIAVFMVAYYMLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALGM 511 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+D+N+L+NER+REE R ++ G++ A++TI DSN+T LIA V L FG G VR Sbjct: 512 AIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPVR 571 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 GFAI + IL SMF+A+ R ++ KK Sbjct: 572 GFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 85/209 (40%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+KG V+ A+ +++ Sbjct: 405 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFM 464 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + ++ L +AA+ +G +++ V++ +R+ Sbjct: 465 VAYY-MLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERV 523 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ + + +G + FAI G Sbjct: 524 REELR---NGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPVRGFAIVHCIG 580 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + I+ Y + K + Sbjct: 581 ILTSMFSAVFFSRGIVNLWYGGKKKLKTL 609 Score = 38.1 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 30/123 (24%), Gaps = 29/123 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + IGL+ LPN ++ ++V Sbjct: 3 RYPLWKYAVMLVALVIGLVYTLPNLFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIADKVTL 117 + + L I + I + D+ + + D + Sbjct: 38 SGKATVKLDSTTLSAVEATLAANQIKPEDVTFDNTSANANIRVRLVDTDTQLRVKDLLQK 97 Query: 118 FLQ 120 L Sbjct: 98 SLN 100 >gi|317047145|ref|YP_004114793.1| protein-export membrane protein SecD [Pantoea sp. At-9b] gi|316948762|gb|ADU68237.1| protein-export membrane protein SecD [Pantoea sp. At-9b] Length = 615 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 164/537 (30%), Positives = 285/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + LGLDLRGG H ++EVD D ++ + Sbjct: 100 VVALNLAPATPRWLSLLAAE---------PMKLGLDLRGGVHFLMEVDMDTALSKLQEQN 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 +D LRS L+ +GI ++ +I N + + F D ++ ++ Q Sbjct: 151 ADGLRSDLRDKGIPYVNVNKIANYGVEIRFRDGTSRDAAISYLSSRHQ-----------D 199 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + + V++ + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 200 LVISSQGSDTLRAVMTDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVE 259 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V G +G ++ +V Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTTVDPSAAASGRVPGDSEVKMTREGQPVVLYKRV 319 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ + ++P V+IS D G T+DNIGKP+A + + Sbjct: 320 ILTGDHITDSTSS-MDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGKK 378 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 379 DANGRAILVKQEEVINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEE 438 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G +G +I +G A + GL+ ++FM+V Y K+GL+A ++ N++L + ++SLL Sbjct: 439 RTIGPTMGQQNITQGLEACLWGLIASIIFMVVFYKKFGLIATSALLCNLVLIVGIMSLLP 498 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+ Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANV 558 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + I SMFTAI RA++ + K++ + I Sbjct: 559 TTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLVYGGKRINKLSI 615 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 81/177 (45%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + ++ I +G+ + IA +I++ + +K F L A + L+ ++ +G +L Sbjct: 440 TIGPTMGQQNITQGLEACLWGLIASIIFMVVFYK-KFGLIATSALLCNLVLIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ ++ S + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI A GI + ++I I+ +Y + N Sbjct: 556 ANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLVYGGKRINK 612 >gi|312134547|ref|YP_004001885.1| protein-export membrane protein secf [Caldicellulosiruptor owensensis OL] gi|311774598|gb|ADQ04085.1| protein-export membrane protein SecF [Caldicellulosiruptor owensensis OL] Length = 310 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 87/303 (28%), Positives = 146/303 (48%), Gaps = 9/303 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I F+ R + +SIL + + G NY IDF GG L + ++ + Sbjct: 1 MTRIDFIGKRKYFYIVSILVMVIGLISYLVQGFNYDIDFTGGTVLEINLHKVPTAKEISE 60 Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--- 651 L G + E + + +T + + + K+ + Sbjct: 61 LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKKKTELSKQTRDKLFAEIAKRYNLKK 120 Query: 652 ---QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + + VG +S EL + I V+I++I MLIYI IRF++ F A+ LI D+ L Sbjct: 121 EDLVSYQNVGAVVSSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + LF I N T +AAVLT++GYS+ND +VV+DR+R+N ++ + +DL++ S+N+T Sbjct: 181 TVYTLFRIPLNSTFIAAVLTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +GRS+ T+++ I ++ + + G I FA P+ G++ SSIFIA + Sbjct: 240 IGRSIATAISVIIVLVVLYIMGVQSIKEFAFPLLIGVISGTYSSIFIATALWFDWELSTR 299 Query: 829 KNA 831 K Sbjct: 300 KKK 302 >gi|111221579|ref|YP_712373.1| preprotein translocase subunit SecF [Frankia alni ACN14a] gi|111149111|emb|CAJ60794.1| Protein-export membrane protein secF [Frankia alni ACN14a] Length = 417 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 9/295 (3%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + F+ R +S + + + G GI+F GG + ++ + V Sbjct: 12 FHVDFVGRRRVWYAVSGVILVICAVSMIFRGFTLGIEFSGGAVFQLPSHGGT-VEQVEQT 70 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S+ I E + R+Q ++ + + K+ + P V Sbjct: 71 LSSVGIDPADGVVQQLETSKQFRVQTPTLTDAQTDKLTDALAKRFSVTDPD-RDIAVSTV 129 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 G + K I G+++ + ++IY+ +RF+W A+ A+ LI D+ T+G ++L G E Sbjct: 130 GSSWGSTITSKAIQGLVVFLVLVMIYLSVRFEWKMAVAAMAALIHDLVVTMGVYSLVGFE 189 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLIDKSINETLGRSVYT 775 + V AVLT++G+S+ D VVV+DR+R+N + ++ + + ++NETL RS+ T Sbjct: 190 VTPSTVIAVLTILGFSLYDTVVVFDRVRENTAGMATSHRRTYAEATNDALNETLVRSLNT 249 Query: 776 SMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 S+ A I V + G + A+ GI SS+F A P+L+ + Sbjct: 250 SLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPLLVDLKR 304 >gi|145640162|ref|ZP_01795746.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021] gi|145274748|gb|EDK14610.1| preprotein translocase subunit SecF [Haemophilus influenzae 22.4-21] Length = 292 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 144/280 (51%), Gaps = 5/280 (1%) Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608 I SI LL N+G+DF GG+ ++ +L +RS L I Sbjct: 3 LYIIRTFNGNFSIFLLLPKDFNWGLDFTGGVVFDTHFSQSANLEQIRSKLHENGIESPVV 62 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 Q ++ ++RL DS + E VK + + I++ E VGP + EL + Sbjct: 63 QTTGSVQDVMIRLPASNNDST----IGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQG 118 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + + + +LIY+ RF+W G+I +L+ D+ TLG F+ IE +LT VAA+L+ Sbjct: 119 AVYATLATLAMVLIYVGSRFEWRLGFGSIASLVHDVIITLGVFSALQIEIDLTFVAAILS 178 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 ++GYS+ND +VV+DR+R+N + + D+ID S+ +TL R++ TS+ + V+ + Sbjct: 179 VVGYSINDSIVVFDRVRENFRKI-RRLDTIDIIDISLTQTLSRTIITSVTTLVVVMALFF 237 Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +GG I +F++ + GI SSIF+A I + R Sbjct: 238 FGGPSIHNFSLALLVGIGFGTYSSIFVAIAIAYDVGLRRE 277 >gi|107021795|ref|YP_620122.1| preprotein translocase subunit SecF [Burkholderia cenocepacia AU 1054] gi|116688742|ref|YP_834365.1| preprotein translocase subunit SecF [Burkholderia cenocepacia HI2424] gi|170732040|ref|YP_001763987.1| preprotein translocase subunit SecF [Burkholderia cenocepacia MC0-3] gi|254246283|ref|ZP_04939604.1| SecD/SecF/SecDF export membrane protein [Burkholderia cenocepacia PC184] gi|105891984|gb|ABF75149.1| protein translocase subunit secF [Burkholderia cenocepacia AU 1054] gi|116646831|gb|ABK07472.1| protein translocase subunit secF [Burkholderia cenocepacia HI2424] gi|124871059|gb|EAY62775.1| SecD/SecF/SecDF export membrane protein [Burkholderia cenocepacia PC184] gi|169815282|gb|ACA89865.1| protein-export membrane protein SecF [Burkholderia cenocepacia MC0-3] Length = 316 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ LF GL+ ++F GG + V + + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF +N L+RLQ + G + AQ + V + P T Sbjct: 61 LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMGALKAQSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA+L ++GYSVN+ VV++DR+R+ + +S +++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|261212157|ref|ZP_05926443.1| protein-export membrane protein SecD [Vibrio sp. RC341] gi|260838765|gb|EEX65416.1| protein-export membrane protein SecD [Vibrio sp. RC341] Length = 606 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 153/523 (29%), Positives = 276/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 93 NLAASTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVTQQEESFRSDLRDEKI 152 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D T + Sbjct: 153 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 204 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 205 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 264 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 265 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 323 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 324 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKQEEV 383 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 443 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A V G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 444 GIQACVWGMVAVMLFTLLYYRKFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVL 503 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 563 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 564 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 606 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 90/213 (42%), Gaps = 5/213 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G + + ++ +I +GP + ++ I GI + +A Sbjct: 395 RNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACVWGMVA 454 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F + A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 455 VMLFTLLYYR-KFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 513 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ + + I + ++ I+ + + G I FA Sbjct: 514 LIFERIREELRE---GKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 570 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ GI+ + ++I I+ +Y + N Sbjct: 571 VTLSIGILTSMFTAIVGTRCIVNLLYGGKRINK 603 >gi|28897364|ref|NP_796969.1| preprotein translocase subunit SecD [Vibrio parahaemolyticus RIMD 2210633] gi|260876325|ref|ZP_05888680.1| protein-export membrane protein SecD [Vibrio parahaemolyticus AN-5034] gi|260898596|ref|ZP_05907092.1| protein-export membrane protein SecD [Vibrio parahaemolyticus Peru-466] gi|28805576|dbj|BAC58853.1| protein-export membrane protein SecD [Vibrio parahaemolyticus RIMD 2210633] gi|308086850|gb|EFO36545.1| protein-export membrane protein SecD [Vibrio parahaemolyticus Peru-466] gi|308092879|gb|EFO42574.1| protein-export membrane protein SecD [Vibrio parahaemolyticus AN-5034] Length = 618 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 156/524 (29%), Positives = 274/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + + RS L+ I Sbjct: 104 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKI 163 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + D +T + D + + Sbjct: 164 RYRAIRPSGKEGVEVLLRDEEQLAEAKRTLTKN--------HPDMNFVESDSNGRYALIA 215 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 216 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275 Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G +D DG +++ +V +SG + ++ Sbjct: 276 LGATATLEFREVDDKADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILSGASITD-ASS 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + ++ NIGK +A V Sbjct: 335 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRKTPEGKVILTKHEE 394 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A V G+V ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 455 MGIQACVWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 514 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GAV+GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 TGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRVDKLSI 618 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI + +A Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACVWGMVA 466 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 467 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G + FA Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 582 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I I+ +Y + Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLLYGGKR 612 Score = 40.1 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVFFAIITAALYALPNIYGEDPAIQVTGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + + L KE + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTTALDKEHLSHKSIAFENGSILVRFNDTDTQISARDVISEAL 95 >gi|168187982|ref|ZP_02622617.1| protein-export membrane protein SecF [Clostridium botulinum C str. Eklund] gi|169294187|gb|EDS76320.1| protein-export membrane protein SecF [Clostridium botulinum C str. Eklund] Length = 289 Score = 210 bits (534), Expect = 8e-52, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 140/286 (48%), Gaps = 5/286 (1%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS+ I + L GLNYGIDFKGG + + + D + ++ Sbjct: 7 KTKIWFAISLTVIILGMVCLGVKGLNYGIDFKGGTIVTIEMGKNFDQKTKEEADKIIKKY 66 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 D + ++ + L + E+ K + + + VGP + E Sbjct: 67 DPTASSYIANETQLEIKSNNLESNSINKMFGELKTKYKLKDNA---LVSQNKVGPSVGNE 123 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L +K ++I+ IAMLIYI RF+ F + AI L+ DI TLG + I N +A Sbjct: 124 LKKKAAGALVIATIAMLIYIGFRFEIKFGIAAILALVHDILITLGVYGFTQIPVNSPFIA 183 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT++GYS+ND +V++DR+R+N + +++D SI +T+ RSV T + +++ Sbjct: 184 AMLTIVGYSINDTIVIFDRIRENRRKL-RGRDIVEIVDMSITQTMSRSVNTVLTTLFTIV 242 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + ++ + F P+ GIV A SSIFIA+PI + + + +K Sbjct: 243 SVYIF-VPSVRDFTFPLIIGIVCGAYSSIFIASPIWVLLRKFGSKK 287 >gi|295675561|ref|YP_003604085.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1002] gi|295435404|gb|ADG14574.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1002] Length = 316 Score = 210 bits (534), Expect = 8e-52, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 155/302 (51%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS++ + ++ L GL+ ++F GG + V Sbjct: 1 MEFFRFRKDIPFMQRALIFNAISLITFLAAVFFLVHRGLHLSVEFTGGTVIEVQYPSAAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF ++ L+RL + G + AQ E V + P Sbjct: 61 LDPVRATLGKLGYADAQVQNFGTARDVLIRLPLKSGFTSAQQS--EQVMSALKADTPEVQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + I ++IY+ RF+W +A+ + + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + +S ++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMSVIEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M ++GG + FA+ + GI+ SS+F+AA + ++ R Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|83590526|ref|YP_430535.1| preprotein translocase subunit SecF [Moorella thermoacetica ATCC 39073] gi|83573440|gb|ABC19992.1| protein translocase subunit secF [Moorella thermoacetica ATCC 39073] Length = 310 Score = 210 bits (534), Expect = 8e-52, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 155/299 (51%), Gaps = 10/299 (3%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGL--NYGIDFKGGIQLGVLANRPVDLSV 593 F+ R W +S+L I + + H N+GIDF GG + V ++PV Sbjct: 1 MNFNFDFVNRRKWWYALSLLVIIPGLIAMALHRPVLNFGIDFTGGNIIQVQFHQPVTSGQ 60 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 VR L+ L +G S Q + + + V + + ++ Sbjct: 61 VRDVLDGLNLGKSSIQESGSNQ-------FLIRTTELNEEQTNQVISTLQSKLGQLDLKR 113 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 E VG I REL +G+ ++I+ I M+IYI IRF++ L AI L+ D+ T+GFFAL Sbjct: 114 NEKVGGTIGRELTIRGVEAMVIAWILMIIYITIRFEFLSGLAAILALVHDVLVTIGFFAL 173 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 F E + T +AA+LT+IGYS+ND +V++DR+R+N++L + +++++SIN+TL RS+ Sbjct: 174 FRWEVDSTFIAAILTIIGYSINDTIVIFDRIRENLRL-RKKETIEEVVNRSINQTLTRSI 232 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 T + ++L + + GG +FA+ M G + SSIF A+P+ + + R Sbjct: 233 NTVLTVIFALLALILLGGETTRTFALAMLIGTISGCYSSIFTASPLWIDFRHLSRERHR 291 >gi|313894652|ref|ZP_07828215.1| export membrane protein SecF [Veillonella sp. oral taxon 158 str. F0412] gi|313440842|gb|EFR59271.1| export membrane protein SecF [Veillonella sp. oral taxon 158 str. F0412] Length = 298 Score = 210 bits (534), Expect = 8e-52, Method: Composition-based stats. Identities = 82/289 (28%), Positives = 146/289 (50%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 + W IS + I S+ +F G N+GID+ GG + V+ +PV++S VR L+ + Sbjct: 7 KHHRWWFAISSILVIISLISIFMKGFNFGIDYTGGTIVEVVFEQPVEVSQVRDVLKEYNL 66 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663 + Q ++ V + +T+ V +T++ E VG I Sbjct: 67 ENAQIQLSGDTTGDTSGKDVMIRTRNLESSESAAVVESLTKNVGQNTVKRIETVGAVIGS 126 Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723 E+ + ++I+ +A+ IYI RF++ A+ A+ + D+ LG F+ F +E + + + Sbjct: 127 EVTEHALTNLLIAFLALAIYISYRFEYKVAISALIAIFHDLIMVLGVFSYFQLEIDASFL 186 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 AAVLT++GYS+N+ VV++DR+R+N + S +F DL + S+ +++ RS YT + Sbjct: 187 AAVLTVVGYSMNESVVIFDRVRENTHTHKRSDTFADLANASVTQSIHRSFYTLATVMFAC 246 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + V+GG +FA+ M G A SSI +A + + R Sbjct: 247 VSLYVFGGDTTKNFALCMIIGFASGAYSSICVATSLWAIWKSRNKNDVR 295 >gi|294338530|emb|CAZ86859.1| Preprotein translocase subunit SecF [Thiomonas sp. 3As] Length = 317 Score = 210 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 153/302 (50%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR +S + ++ LFT GLN I+F GG + V ++ + Sbjct: 1 MEFFRIKRDIPFMRNALTFNVVSAVLFAAAVFFLFTRGLNLSIEFTGGTVMEVGYSQGAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R+ L L D Q + + ++RL G++ ++ V + P + Sbjct: 61 IDGIRATLSKLGYADAQVQAYGNANDVVIRLPLHKGETSSEQS--TKVMAGLLAADPQAQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + TE VGP++ EL G+ + + ++ Y+ +RF+W F++ AI + D+ LGF Sbjct: 119 QRRTEFVGPQVGSELATDGLKALALVIFGIVAYLAVRFEWKFSVAAILANLHDVIIVLGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FALF EF+L +AAVL ++GYSVN+ VV++DR+R+N + Y + +ID +I T+ Sbjct: 179 FALFQWEFSLPVLAAVLAVLGYSVNESVVIFDRVRENFRKYRK-YTTVQVIDSAITNTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R+V T + M +GG + FA+ + GI ++ SS+F+AA + ++ R Sbjct: 238 RTVITHGSTLAMAFSMFFFGGPALHYFALALIIGISMSIYSSVFVAAALAMWFGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|70732295|ref|YP_262051.1| preprotein translocase subunit SecF [Pseudomonas fluorescens Pf-5] gi|68346594|gb|AAY94200.1| protein-export membrane protein SecF [Pseudomonas fluorescens Pf-5] Length = 304 Score = 210 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 161/286 (56%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R G+++L +I ++ F GLNYG+DF GG + + RP D+ VRS Sbjct: 3 RTINFMGVRNVAFGVTVLLTILALFSWFHKGLNYGLDFTGGTLIELTYERPADVMKVRSQ 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + Q+F + LVR+ + Q + ++ E V Sbjct: 63 LNDAGYHEAIVQSFGATTDLLVRMPGEDPQLGHQVAEALQ----KVGGDNPAQVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGILIYLAFRFQWKFAVGAIVSLIHDVIVTVGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ASLIENINISTTQTLLRTMATSI 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIVALLFFGGDNLWGFSIALFVGVLAGTYSSIYIANVVLIWL 283 >gi|311108322|ref|YP_003981175.1| protein-export membrane protein SecF [Achromobacter xylosoxidans A8] gi|310763011|gb|ADP18460.1| protein-export membrane protein SecF [Achromobacter xylosoxidans A8] Length = 311 Score = 210 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 153/302 (50%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS + + ++ + T G + I+F GG + V + Sbjct: 1 MEFFRIHRTIPFMRHALVLNIISFVTFLAAVFFIVTRGFHLSIEFTGGTVMEVNYAQTAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR + L D QNF + ++RL Q G + A E V + Sbjct: 61 LENVRGVVSKLGYTDFQVQNFGTSHDVMIRLPLQEGQTSATQS--ETVMAALKTADSGVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL+ G++ +++ I +++Y+ RF+W FA+ + + D+ LGF Sbjct: 119 LRRVEFVGPQVGQELLHNGLMALLVVVIGIMVYLGFRFEWKFAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +A VL ++GYSVN+ VV+ DR+R+N + Y ++I+ +I +T+ Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKYRK-ADVHEVINSAITQTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI SS+F+AA + +++ R Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPTLHYFAMALTIGIWFGIYSSVFVAAALAMWLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 Score = 46.2 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 91/179 (50%), Gaps = 5/179 (2%) Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTL 402 + + VG +G + ++ G A++ ++ I++++ + K+ + + +V++ L Sbjct: 117 VELRRVEFVGPQVGQELLHNGLMALLVVVIGIMVYLGFRFEWKFAVAGVIANLHDVVIIL 176 Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAY 460 + +L +AG++ +G +V+ ++++ +RIRE RK + V ++ ++ Sbjct: 177 GFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKADVHEVINSAITQTI 236 Query: 461 S-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 S TI T ++ +LFF GG + FA+ + + I +++++ + A+ +++ + Sbjct: 237 SRTIITHGSTQMMVLAMLFF-GGPTLHYFAMALTIGIWFGIYSSVFVAAALAMWLGVKR 294 >gi|52425618|ref|YP_088755.1| preprotein translocase subunit SecD [Mannheimia succiniciproducens MBEL55E] gi|52307670|gb|AAU38170.1| SecD protein [Mannheimia succiniciproducens MBEL55E] Length = 616 Score = 210 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 155/524 (29%), Positives = 285/524 (54%), Gaps = 39/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + ++ + D LR+ L+KE I Sbjct: 104 NLAPSTPAWLSSIGGNPMKWGLDLRGGVRFLMEVDMNTALSKRQEQLQDSLRTELRKEKI 163 Query: 87 GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +++ N T ++ + + + + + +++ Sbjct: 164 QYSAIKNTDNFGTGVTLVKPEQLSDAGRFLRK-----------QHPNLNITESADNTLNL 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS+ + + +A+EQ++ I+R+R++++G+SE+ IQR G+ RI+++LPG QD +R +++ Sbjct: 213 ALSEQALTEARENAVEQNLGILRKRVEELGVSEAVIQRQGAERIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N S + + + DG + + + G H+ A++ Sbjct: 273 LGATATLEFRLVNQNVSPEAMVRNIVPTDTEVKFMRDGQPVALFKRAVLGGEHITNASSG 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D +T +P V ++ D G + TR NI KP+A + + Sbjct: 333 LDQQTSRPQVSVTLDSEGGEIMADTTRLNIKKPMATLYVEYKDSGKKDENGKVILEKHEE 392 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q + QI+G + A L+ +LR+G+L + IVEER VG LG+ ++ Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEAQNLSVLLRSGALTAPIQIVEERTVGPSLGAQNVA 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GL ++++F +V Y +GLVA ++ N++L + L+SLL ATLT+P IAGI+ Sbjct: 453 QGLNAGLWGLAIVIVFCLVFYKVFGLVASLALCANMVLVVGLMSLLPGATLTMPGIAGII 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G++VD+N+L+ ERI+EE R + + +++ G++ A+++IFD+N+T ++ ++VL+ G Sbjct: 513 LSVGMSVDANVLIFERIKEELRNGRPIQQAINEGYNGAWTSIFDANLTTILTSIVLYAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ L + ISMFTAI+ R ++ +I K+++ + I Sbjct: 573 TGPVKGFAVTLALGVAISMFTAITGTRMLINWIYGGKRVEKLSI 616 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 79/172 (45%), Gaps = 5/172 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716 GP + + + +G+ + ++++ + +K F L A L ++ +G +L G Sbjct: 443 GPSLGAQNVAQGLNAGLWGLAIVIVFCLVFYKV-FGLVASLALCANMVLVVGLMSLLPGA 501 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 + +A ++ +G SV+ V++++R+++ ++ + I++ N + Sbjct: 502 TLTMPGIAGIILSVGMSVDANVLIFERIKEELR---NGRPIQQAINEGYNGAWTSIFDAN 558 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + + G + FA+ +A G+ ++ ++I ++ +IY + Sbjct: 559 LTTILTSIVLYAVGTGPVKGFAVTLALGVAISMFTAITGTRMLINWIYGGKR 610 Score = 40.8 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 26/120 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ IG+L ALPN + + RG Sbjct: 4 RYPLWKNLMVILVIAIGVLYALPNIYGEDPAVQISGT------------RG--------- 42 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + ++++ L + S++ + I F ++ + DK+T L Sbjct: 43 -----QTATETTLTDVQTLLTSNQLEPKSIKLEEGSILARFHNTDDQLLAKDKITEKLGQ 97 >gi|83746739|ref|ZP_00943787.1| Protein translocase subunit secF [Ralstonia solanacearum UW551] gi|207744284|ref|YP_002260676.1| protein-export membrane [Ralstonia solanacearum IPO1609] gi|83726508|gb|EAP73638.1| Protein translocase subunit secF [Ralstonia solanacearum UW551] gi|206595689|emb|CAQ62616.1| protein-export membrane [Ralstonia solanacearum IPO1609] Length = 322 Score = 210 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 96/305 (31%), Positives = 163/305 (53%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S L I ++ LF +GL+ ++F GG + V + D Sbjct: 1 MEFFRIRRDIPFMKHALAFNAVSFLTFIAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L VR+++E L D QNF ++ ++RL + A + V +T P Sbjct: 61 LPKVRADVEKLGYADAQVQNFGTSRDVMIRLPLKNSPDGKPIASAVQSQQVMSALTADTP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G++ ++ I ++IY+ IRF+W FA+ I + DI Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + VL M V+GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|307129895|ref|YP_003881911.1| secYEG protein translocase auxillary subunit [Dickeya dadantii 3937] gi|306527424|gb|ADM97354.1| SecYEG protein translocase auxillary subunit [Dickeya dadantii 3937] Length = 615 Score = 210 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 171/538 (31%), Positives = 290/538 (53%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 99 FVVALNLAPATPTWLRMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 149 Query: 73 YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+++GI S+R+ N + + F D + +++ +T + Sbjct: 150 TMDSLRSDLREKGIQYASVRKSDNYGVEILFRDGQLRDDAVTYLTSRHR----------- 198 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 ++ + + V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI++ Sbjct: 199 DLVINASGSDTLRAVMSDARLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 258 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V N G DG + + Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNSNVDPVALSNGRVPGDTEVMNMRDGGPVALYKR 318 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T+ + + ++P V+IS D G T+DNIGKP+A + + Sbjct: 319 VILTGDHITDSTS-GNDEYNRPQVNISLDSAGGNAMSNFTKDNIGKPMATLFVEYKDSGK 377 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 Q+ +I+G A L+ +LRAG+L + IVE Sbjct: 378 KDANGRAILEKQEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 437 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A +AGL + +LFMI Y K+G++A ++ LN++L + ++SLL Sbjct: 438 ERTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYKKFGMIATSALLLNLVLVVGIMSLL 497 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+N Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDAN 557 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T LI ++L+ G G+++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 558 VTTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 76/177 (42%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ +K F + A + L+L++ +G +L Sbjct: 440 TIGPTLGMQNITQGLEACLAGLAVSILFMIFFYK-KFGMIATSALLLNLVLVVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANVTTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612 Score = 38.9 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + +GLL ALPN + + Sbjct: 4 RYPLWKYLMLIVTIVVGLLYALPNLYGEDPA---------------------IQVT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 L +++ LK++ + S+ I F+ + + + L Sbjct: 42 GTAASESTLVQ----IQNVLKEQNVASKSIALENGAILARFSTPDVQLRAREVLLNAL 95 >gi|254428607|ref|ZP_05042314.1| protein-export membrane protein SecD [Alcanivorax sp. DG881] gi|196194776|gb|EDX89735.1| protein-export membrane protein SecD [Alcanivorax sp. DG881] Length = 626 Score = 210 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 157/524 (29%), Positives = 275/524 (52%), Gaps = 45/524 (8%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + ++LGLDLRGG H +L+VD D V ++ + + L+ G+ Sbjct: 104 NLAATTPQWLREIGASPMNLGLDLRGGVHFLLQVDMDSVVKSRMEAWEGTAKLTLRDAGV 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++ +T +F D + + L + + +I + Sbjct: 164 RYRAVSVDGTTLTATFGDQVAADAARAPLRQALDKLAMQ----------PAGDSPKIVMT 213 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L++ + ++ +A++Q+ + +R++++G++E+ +QR G+ RI++QLPG QD + R++L Sbjct: 214 LNETALKEMQDYAVDQNRTALNKRVNELGVAEAVVQRQGADRIVVQLPGIQDAATARRIL 273 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDSDGNQYLVEDKVEISGIHLNGATA 259 G TA + F V + S G+ + +G + +G + A Sbjct: 274 GRTATLEFRLVDNSVSSARLRSGMAPPGLEFFPFKGQEGRIVALNKSSIATGDQVIDAKM 333 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------A 295 FD + +P V+++ D GARR VT N+G P+ Sbjct: 334 GFDQQNGQPEVNVTLDSDGARRMQRVTGKNVGNPMGVLFIETKTDVKKVIDEDGNSVDQM 393 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 + + Q+ + +I+G A LA +LRAGSL ++IVEER VG Sbjct: 394 TSSTDKYVINVATIQSTLGSRFRITGLDNPAEASELALLLRAGSLAAPVSIVEERTVGPS 453 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTL 414 LG+++I G ++ GL L+++FM++ Y +GL+A+ ++ N+++ + ++SL+ AT+TL Sbjct: 454 LGAENIEAGLKSMALGLSLVLVFMVIWYKLFGLIANVALLGNLVIIVGVMSLIPGATMTL 513 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL +G+AVD+N+L+ ERIRE+ R+ S +++ G++RA++TI D+NIT LI Sbjct: 514 PGIAGIVLTVGMAVDANVLIFERIREDLRRGLSPRQAIEEGYARAFTTIIDANITTLIVA 573 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 V+LF G G+V+GFA+T+ + IL SMFTAI RAM I Sbjct: 574 VILFAAGTGSVQGFAVTLFIGILTSMFTAIIGTRAMAEMIYGRG 617 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 104/258 (40%), Gaps = 6/258 (2%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 + G + + + + ++++ + + + +++ Sbjct: 366 NPMGVLFIETKTDVKKVIDEDGNSVDQMTSSTDKYVINVATIQSTLGSRFRITGLDNPAE 425 Query: 634 VLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 E + + + +I VGP + E I G+ + + +L+++ I +K F Sbjct: 426 ASELALLLRAGSLAAPVSIVEERTVGPSLGAENIEAGLKSMALGLSLVLVFMVIWYKL-F 484 Query: 693 ALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 L A L+ ++ +G +L G L +A ++ +G +V+ V++++R+R++++ Sbjct: 485 GLIANVALLGNLVIIVGVMSLIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREDLR-- 542 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811 +S R I++ + ++ I + + G + FA+ + GI+ + + Sbjct: 543 -RGLSPRQAIEEGYARAFTTIIDANITTLIVAVILFAAGTGSVQGFAVTLFIGILTSMFT 601 Query: 812 SIFIAAPILLFIYDWRAK 829 +I + IY A+ Sbjct: 602 AIIGTRAMAEMIYGRGAR 619 >gi|149926692|ref|ZP_01914952.1| protein export protein SecF [Limnobacter sp. MED105] gi|149824621|gb|EDM83837.1| protein export protein SecF [Limnobacter sp. MED105] Length = 317 Score = 210 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 97/307 (31%), Positives = 163/307 (53%), Gaps = 6/307 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FMR IS L ++ L T GLN ++F GG+ + ++P + Sbjct: 1 MELFRITKDIPFMRHAKIFNIISFLTFAAAVFFLSTKGLNLSVEFTGGVLVEARYSQPAE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-----VAQTRVLEMVKKKITEI 645 L +R L + I + QNF ++ LVRL + S + M ++ ++ Sbjct: 61 LEKIREGLRATGIDEPQVQNFGTARDVLVRLAVKDLQSGVLGTEGKLNQQAMTEQVLSLG 120 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 P + E VGP++ REL G++ +++ I ++IY+ +RF+W FA+ AI + D+ Sbjct: 121 GPDVQLMRVEFVGPQVGRELAENGVIALMVVIIGIMIYLALRFEWKFAVSAIVANLHDVV 180 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGFFA FG EF+L+ +AAVL ++GYSVN+ VVV+DR+R+ K ++ + ID +I Sbjct: 181 IILGFFAFFGWEFSLSVLAAVLAVLGYSVNESVVVFDRIRETFKK-VRRMTVSETIDNAI 239 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 T+ R++ T + I V M +GG + FA+ + GI+ SS+ +A+P+L+++ Sbjct: 240 TRTISRTIITHGSTQIMVCSMLFFGGPTLHGFALALTIGILFGIYSSVLVASPMLMWMGL 299 Query: 826 WRAKNAR 832 R + Sbjct: 300 TREDLVK 306 Score = 52.0 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 98/194 (50%), Gaps = 5/194 (2%) Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVIL 400 + ++ VG +G + G A++ ++ I++++ + + K+ + A + +V++ Sbjct: 122 PDVQLMRVEFVGPQVGRELAENGVIALMVVIIGIMIYLALRFEWKFAVSAIVANLHDVVI 181 Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR--KNQSVFCSLDMGFSR 458 L + G +L +A ++ +G +V+ +++V +RIRE + + +V ++D +R Sbjct: 182 ILGFFAFFGWEFSLSVLAAVLAVLGYSVNESVVVFDRIRETFKKVRRMTVSETIDNAITR 241 Query: 459 AYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 S TI T ++ +LFF GG + GFA+ + + IL +++++ + M++++ Sbjct: 242 TISRTIITHGSTQIMVCSMLFF-GGPTLHGFALALTIGILFGIYSSVLVASPMLMWMGLT 300 Query: 518 KKMKSIDINPLSRF 531 ++ + F Sbjct: 301 REDLVKPVKKDKEF 314 >gi|251793028|ref|YP_003007754.1| preprotein translocase subunit SecF [Aggregatibacter aphrophilus NJ8700] gi|247534421|gb|ACS97667.1| protein-export membrane protein SecF [Aggregatibacter aphrophilus NJ8700] Length = 321 Score = 210 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 162/293 (55%), Gaps = 6/293 (2%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 ++FM+ R WG S++ S+ +FT G N+G+DF GG+ + ++P DL +R Sbjct: 19 PFRLVEFMKFRMWGYLASVVIIAVSLFFVFTKGFNWGLDFTGGVVVDTHFSQPADLEKIR 78 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + L I Q G ++ ++RL ++ + VKK ++ + I++ E Sbjct: 79 TTLTQNGIESPLVQTTGGVRDVMIRLPATE-----NAQIGDHVKKMLSTLDSDIQIRSIE 133 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL + I + + I +L+Y+ +RF+W A G + +L D+ TLG F+ Sbjct: 134 FVGPNVGEELTQGAIYATLTTLIMLLLYVGMRFEWRLATGGVLSLAHDVIVTLGAFSYLQ 193 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IE +LT +AA+L+++GYS+ND +VV+DR+R+N + S D+I+ S+ +TL R++ T Sbjct: 194 IEMDLTFIAAILSVVGYSLNDSIVVFDRVRENFRKIRRIASI-DIINISLTQTLSRTIMT 252 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S+ I V+ + V+GG I SF++ + GI SSIF+A I + R Sbjct: 253 SVTTLIVVIALFVFGGPTIHSFSLALLIGIGFGTYSSIFVAIAIAYDLGLDRE 305 >gi|581230|emb|CAA39634.1| unnamed protein product [Escherichia coli K-12] Length = 615 Score = 210 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 291/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + D L S L+++GI Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLASDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F D++ ++ ++ ++ + ++ Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGL++ +LFMI+ Y K+GL+A ++ N+IL + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V ++D G+ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + + ++++ I +K F L A + LI ++ +G +L Sbjct: 440 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + ID+ Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612 >gi|118580217|ref|YP_901467.1| preprotein translocase subunit SecF [Pelobacter propionicus DSM 2379] gi|118502927|gb|ABK99409.1| protein translocase subunit secF [Pelobacter propionicus DSM 2379] Length = 307 Score = 210 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 87/297 (29%), Positives = 148/297 (49%), Gaps = 4/297 (1%) Query: 538 IAIQFMRARFWGVGISILFS---ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 I FM + ISI+ S I I + N GIDF GG + + ++P+D++ Sbjct: 7 TNIDFMGKKKLSFAISIIISLVGIMGIISIARGTANMGIDFSGGTAMQLKFSKPMDIAKA 66 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R+ L I Q L+++ S+ + + + T++++ Sbjct: 67 RAALHKNGIPKADLQEIRDGNKLLIKIDRNTSISLGKAADAVQAAFRKAHPDNIFTVESS 126 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 +GP I +L + +V V I+ + +++YI RF + F + A I D F + Sbjct: 127 TEIGPSIGDKLRKDTLVAVAIALLGIILYIAWRFDFKFGIAATLATIHDCLAMFAVFYIL 186 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 E NL V AVLT+ GYS+ D VVV+DR+R+NM + L ++SINE L RS+ Sbjct: 187 DREINLLFVTAVLTIAGYSLTDTVVVFDRIRENMHKHLKEA-LPPLFNRSINEVLSRSII 245 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 T++ F++ + ++GG VI F++ + GIVV A SS+F+A+PI++ + + + Sbjct: 246 TALTTFLASASLFLFGGEVIHDFSLALLVGIVVGAYSSVFVASPIVVLLEERALRKK 302 >gi|262168808|ref|ZP_06036503.1| protein-export membrane protein SecD [Vibrio cholerae RC27] gi|262190474|ref|ZP_06048725.1| protein-export membrane protein SecD [Vibrio cholerae CT 5369-93] gi|262022926|gb|EEY41632.1| protein-export membrane protein SecD [Vibrio cholerae RC27] gi|262033646|gb|EEY52135.1| protein-export membrane protein SecD [Vibrio cholerae CT 5369-93] gi|327483530|gb|AEA77937.1| Protein-export membrane protein SecD [Vibrio cholerae LMA3894-4] Length = 606 Score = 210 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 93 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 152 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D + + Sbjct: 153 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 204 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 205 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 264 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 265 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 323 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 324 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 383 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 443 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 444 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 503 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 563 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 564 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 606 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 360 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 419 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 478 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 535 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 595 Query: 824 YDWRAKNA 831 Y + N Sbjct: 596 YGGKRINK 603 >gi|229525389|ref|ZP_04414794.1| protein-export membrane protein SecD [Vibrio cholerae bv. albensis VL426] gi|229338970|gb|EEO03987.1| protein-export membrane protein SecD [Vibrio cholerae bv. albensis VL426] Length = 617 Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 150/523 (28%), Positives = 275/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D + + Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGCFVLVAK 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++I EER +G +G +I Sbjct: 395 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIAEERTIGPSMGQQNIDM 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 431 LIAPISIAEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 606 Query: 824 YDWRAKNA 831 Y + N Sbjct: 607 YGGKRINK 614 Score = 40.1 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + + L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + L K + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDIISEAL 95 >gi|300690470|ref|YP_003751465.1| SecYEG protein translocase auxillary subunit [Ralstonia solanacearum PSI07] gi|299077530|emb|CBJ50156.1| SecYEG protein translocase auxillary subunit [Ralstonia solanacearum PSI07] Length = 322 Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 95/305 (31%), Positives = 164/305 (53%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S L I ++ LF +GL+ ++F GG + V + + Sbjct: 1 MEFFRIRRDIPFMKHALAFNAVSFLTFIAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L +R+++E L D QNF ++ ++RL + G A + V +T P Sbjct: 61 LPKIRADVEKLGYADAQVQNFGTSRDVMIRLPLKNGPDGKPIASAVQSQQVMSALTATTP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G++ ++ I ++IY+ IRF+W FA+ I + DI Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + VL M V+GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|206561645|ref|YP_002232410.1| preprotein translocase subunit SecF [Burkholderia cenocepacia J2315] gi|198037687|emb|CAR53630.1| putative protein-export membrane protein SecF [Burkholderia cenocepacia J2315] Length = 316 Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ LF GL+ ++F GG + V + + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF +N L+RLQ + G + AQ + V + P T Sbjct: 61 LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMGALKAQSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA+L ++GYSVN+ VV++DR+R+ + +S +++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|313497205|gb|ADR58571.1| SecF [Pseudomonas putida BIRD-1] Length = 302 Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 160/287 (55%), Gaps = 5/287 (1%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R +++L ++ ++ + GLN+G+DF GG + + RP DL VR+ Sbjct: 1 MKTINFMGVRNVAFAVTVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + + Q+F + LVR+ + +T++ E Sbjct: 61 ELVNSGFDEAVVQSFGATTDLLVRMPGDDPQLGN----KVAAALQKAGGDNPATVKRVEF 116 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VGP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ TLG + F I Sbjct: 117 VGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQI 176 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ S + I+ S +TL R+V TS Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINISTTQTLLRTVATS 235 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ +++ + +GG + F++ + G++ SSI+IA +L+++ Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282 >gi|308125752|ref|ZP_05777112.2| protein-export membrane protein SecD [Vibrio parahaemolyticus K5030] gi|308114720|gb|EFO52260.1| protein-export membrane protein SecD [Vibrio parahaemolyticus K5030] Length = 607 Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 156/524 (29%), Positives = 274/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + + RS L+ I Sbjct: 93 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKI 152 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + D +T + D + + Sbjct: 153 RYRAIRPSGKEGVEVLLRDEEQLAEAKRTLTKN--------HPDMNFVESDSNGRYALIA 204 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 205 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264 Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G +D DG +++ +V +SG + ++ Sbjct: 265 LGATATLEFREVDDKADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILSGASITD-ASS 323 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + ++ NIGK +A V Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRKTPEGKVILTKHEE 383 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A V G+V ++LF ++ Y +GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 444 MGIQACVWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 503 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GAV+GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 564 TGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRVDKLSI 607 Score = 145 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 90/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI + +A Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACVWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G + FA Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I I+ +Y + Sbjct: 572 VTLSIGILTSMFTAIIGTRCIVNLLYGGKR 601 >gi|299065732|emb|CBJ36908.1| SecYEG protein translocase auxillary subunit [Ralstonia solanacearum CMR15] Length = 322 Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 163/305 (53%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S L I ++ LF +GL+ ++F GG + V + D Sbjct: 1 MEFFRIRRDIPFMKHALAFNAVSFLTFIAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L VR+++E L D QNF + ++RL + G A + V +T P Sbjct: 61 LPKVRADVEKLGYADAQVQNFGTSHDVMIRLPLKNGPDGKPIASAVQSQQVMSSLTATTP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G++ ++ I ++IY+ IRF+W FA+ I + DI Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + VL M V+GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|311694372|gb|ADP97245.1| preprotein translocase subunit SecD [marine bacterium HP15] Length = 624 Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 157/522 (30%), Positives = 270/522 (51%), Gaps = 37/522 (7%) Query: 32 LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 P + + LGLDLRGG H +LEVD + V+ L S +++ L++E I Sbjct: 107 AASTPGWLKSLGAGPMKLGLDLRGGVHFLLEVDMETAVSQRLDAMSGQIKRELREERIRY 166 Query: 89 FSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147 N+ I LSF D + + V + + L + + L Sbjct: 167 RGGDVQDNREIVLSFRDEASRTEAFNMVRDQYNEFLLDEQTEGDEFL--------LVLTL 218 Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 S+ + + +A+EQ++ IR R++++G++E +Q+ G+ RI+++LPG QD ++ +++LG Sbjct: 219 SEAEVTAIQDYALEQNLTTIRNRVNELGVAEPLVQQQGADRIIVELPGVQDTAQAKRVLG 278 Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 TA + F RD +E +V +G ++ A FD + Sbjct: 279 ATANLEFRMEA-RQDAPSSETEEFGFRDQPQRTARLEQEVIATGNNVANAQQAFDENG-Q 336 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV-------------------- 307 P V+I+ D +G TR+ IG+ +AV+ Sbjct: 337 PQVNITMDSVGGDLMNRATRNAIGRRMAVLFIEYRTETETRMVDGEPQEVENRVVEKGII 396 Query: 308 ---INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 Q+ +I+G +I A LA +LRAG+L + V+ER +G LG +I G Sbjct: 397 SLATVQSALGSSFRITGLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAG 456 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 ++ G L++L+M+V Y +G+VA+ ++ LN++L +A +S+L ATLTLP IAGIVL + Sbjct: 457 MMSVALGFGLVLLYMLVYYRGFGVVANIALTLNLMLLVACMSILSATLTLPGIAGIVLTV 516 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ ERI+EE + +++ G+SRA+ +IFD+NIT L+ V+LF G G Sbjct: 517 GMAVDANVLIFERIKEELKSGVPPQTAINSGYSRAFVSIFDANITTLLVAVILFAMGSGP 576 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 V+GFA+T+ + IL SMF+ + + R+++ + ++++ + I Sbjct: 577 VKGFAVTLCIGILTSMFSGLMVSRSIVNIVYGGRRVEKLSIG 618 Score = 157 bits (395), Expect = 9e-36, Method: Composition-based stats. Identities = 30/248 (12%), Positives = 94/248 (37%), Gaps = 4/248 (1%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + + ++ + + ++ L G + Sbjct: 368 IEYRTETETRMVDGEPQEVENRVVEKGIISLATVQSALGSSFRITGLDSIPEAAELALLL 427 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + +GP + ++ I G++ V + +L+Y+ + ++ F + A L Sbjct: 428 RAGALAAPMYFVQERTIGPSLGQKNIDAGMMSVALGFGLVLLYMLVYYR-GFGVVANIAL 486 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 L++ + ++ L +A ++ +G +V+ V++++R+++ +K + + + Sbjct: 487 TLNLMLLVACMSILSATLTLPGIAGIVLTVGMAVDANVLIFERIKEELK---SGVPPQTA 543 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 I+ + ++ + + + G + FA+ + GI+ + S + ++ I+ Sbjct: 544 INSGYSRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCIGILTSMFSGLMVSRSIV 603 Query: 821 LFIYDWRA 828 +Y R Sbjct: 604 NIVYGGRR 611 Score = 48.1 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 54/526 (10%), Positives = 136/526 (25%), Gaps = 38/526 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ + IG + ALPN P + A ++ G Sbjct: 4 KYPLWKNLVILVALVIGFIYALPNLFPDDYAIQITGARSSTEVNAG-------------- 49 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 L L S + +++ I L+ +S + V L Sbjct: 50 -------VLDRAVGVLESR--GIEVKSSTLQDRDALIRLT--NSEDQLQARPLVQAALGN 98 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174 LN+ + + + + + A+ Q ++ + +I + Sbjct: 99 EYLVALNMAASTPGWLKSLGAGPMKLGLDLRGGVHFLLEVDMETAVSQRLDAMSGQIKRE 158 Query: 175 GISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232 E R I L + SR + + + F+ + Sbjct: 159 LREERIRYRGGDVQDNREIVLSFRDEASRTEAFNMVRDQYNEFLLDEQTEGDEFLLVLTL 218 Query: 233 LRDSD--GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 Y +E + +N + I + G + + R Sbjct: 219 SEAEVTAIQDYALEQNLTTIRNRVNELGVAEPLVQQQGADRIIVELPGVQDTAQAKRVLG 278 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSG--KAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 AP + Q + E + A + + Sbjct: 279 ATANLEFRMEARQDAPSSETEEFGFRDQPQRTARLEQEVIATGNNVANAQQAFDENGQPQ 338 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 +G D + + T + + ++ + +V + + + L Sbjct: 339 VNITMDSVGGDLMNRATRNAIGRRMAVLFIEYRTETETRMVDGEPQEVENRVVEKGIISL 398 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 + + + G+ ++ L +G S I + Sbjct: 399 ATVQSALGSSFRITGLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMM 458 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 + + ++ + RGF + +++ +++ ++ + + + Sbjct: 459 SVALGFGLVLLYMLVYYRGFGVVANIALTLNLMLLVACMSILSATL 504 >gi|296134584|ref|YP_003641826.1| protein-export membrane protein SecF [Thiomonas intermedia K12] gi|295794706|gb|ADG29496.1| protein-export membrane protein SecF [Thiomonas intermedia K12] Length = 317 Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 154/302 (50%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR +S + + ++ LFT GLN I+F GG + V ++ + Sbjct: 1 MEFFRIKRDIPFMRNALTFNVVSAVLFVAAVFFLFTRGLNLSIEFTGGTVMEVGYSQGAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R+ L L D Q + + ++RL G++ ++ V + P + Sbjct: 61 IDGIRATLSKLGYADAQVQAYGNANDVVIRLPLHKGETSSEQS--TKVMAGLLAADPQAQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + TE VGP++ EL G+ + + ++ Y+ +RF+W F++ AI + D+ LGF Sbjct: 119 QRRTEFVGPQVGSELATDGLKALALVIFGIVAYLAVRFEWKFSVAAILANLHDVIIVLGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FALF EF+L +AAVL ++GYSVN+ VV++DR+R+N + Y + +ID +I T+ Sbjct: 179 FALFQWEFSLPVLAAVLAVLGYSVNESVVIFDRVRENFRKYRK-YTTVQVIDSAITNTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R+V T + M +GG + FA+ + GI ++ SS+F+AA + ++ R Sbjct: 238 RTVITHGSTLAMAFSMFFFGGPALHYFALALIIGISMSIYSSVFVAAALAMWFGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|254490709|ref|ZP_05103894.1| protein-export membrane protein SecF [Methylophaga thiooxidans DMS010] gi|224464165|gb|EEF80429.1| protein-export membrane protein SecF [Methylophaga thiooxydans DMS010] Length = 316 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 166/298 (55%), Gaps = 2/298 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + + IQFM R S + I SI L GLN+GIDF GG + + VD Sbjct: 1 MQFLKNETNIQFMSKRRLAAIFSAILIIASITSLAVQGLNFGIDFTGGTMIELGYQEQVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ +RS+L D + QNF + L+RL E+V + Sbjct: 61 LNQLRSDLTEGGYPDATVQNFGSIHDVLIRLPVIE-TQNMAQLSNEVVSMLQAKNETEID 119 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ EL +G + ++ + +LIY+ +RF++ FA+G++ LI D+ TLGF Sbjct: 120 VRRVEFVGPQVGEELTEQGGLAMLYALFGILIYVSLRFEYRFAIGSVVALIHDVVLTLGF 179 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+L IEF+LT +AA+L +IGYS+ND +VV+DR+R+ S +++++++N+TL Sbjct: 180 FSLTRIEFDLTVLAAILAIIGYSLNDTIVVFDRIRETFLRMRKGSS-EEIVNRALNDTLS 238 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS+ + VL + +GG VI +F+I + GI++ SSI+IA+ +L + + Sbjct: 239 RTMMTSLTTLLVVLALFSFGGEVIHAFSIALLLGIIIGTYSSIYIASNTILAMGVSKE 296 >gi|261346389|ref|ZP_05974033.1| protein-export membrane protein SecF [Providencia rustigianii DSM 4541] gi|282565707|gb|EFB71242.1| protein-export membrane protein SecF [Providencia rustigianii DSM 4541] Length = 322 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 164/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR GISI+ I S ++ G N+G+DF GG + + ++ Sbjct: 5 YTVEQLNYGRKVYDFMRWDNVAFGISIVLLIASCVIIGLKGFNWGLDFTGGTVIEINLSQ 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R +L + D QNF ++ ++RL G Q E++ + Sbjct: 65 PADLDKIRDSLSNSNHKDPLIQNFGSSRDIMIRLPPVEG-VAGQEVGKEIITIINQNVDD 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + EL + G + ++ + I +LIY+ RF+W A GA+ L D+ T Sbjct: 124 QATVKRIEFVGPSVGAELAQTGALALLTALICILIYVGFRFEWRLAAGAVLALAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG +LF IE ++T VA+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 LGILSLFHIEIDMTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLLVVLMLYLFGGAMLEGFSLVMLIGVTIGTISSIYVASALALKMGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|330895870|gb|EGH28156.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. japonica str. M301072PT] Length = 604 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 167/539 (30%), Positives = 275/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 85 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 135 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F D +E V + Sbjct: 136 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 194 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 195 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 247 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 248 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 306 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 307 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 365 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 366 GVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 425 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG D+I KG A + G++ + LF++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 426 AEERTIGPSLGGDNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 485 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 486 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 545 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 546 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 604 Score = 157 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + D + ++ L G + + + Sbjct: 356 TTTYTKQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 415 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I +++ F L A L Sbjct: 416 AGGLAAPMYFAEERTIGPSLGGDNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 474 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 475 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 531 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 532 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 591 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 592 LIYGGRDFKK 601 >gi|254463668|ref|ZP_05077079.1| protein-export membrane protein SecF [Rhodobacterales bacterium Y4I] gi|206684576|gb|EDZ45058.1| protein-export membrane protein SecF [Rhodobacterales bacterium Y4I] Length = 322 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 174/305 (57%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P+ + F + +GIS L + ++ GLN+GIDF+GG + A+ Sbjct: 1 MRLRLVPEETSFDFFKRAKLWLGISALMMVVAMVSFLWQGLNFGIDFRGGTTIRTEASEV 60 Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD+ R L ++GD + + ++R+Q Q ++E +K + Sbjct: 61 VDVGAYRDALAVHELGDVSITEVFDPSFEEDQHVAMIRIQAQGDGEAISGEMIETLKTSL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + P + E VGPK+S ELI ++ V ++ A+L+YIW+RF+W FALGA+ L+ Sbjct: 121 DAVAPGIKFVSVESVGPKVSGELITTAVIAVALAIAAVLVYIWLRFEWQFALGAVAALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I F+L +AA+LT++GYS+ND VVV+DR+R+N++ Y ++++ Sbjct: 181 DVVLTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRY-KQKDLAEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINETL R+V TS+ ++++ + V GG VI F M +G+VV SS+F+A+ ILL Sbjct: 240 ISINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVVVGTYSSVFVASTILLK 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|291288351|ref|YP_003505167.1| protein-export membrane protein SecF [Denitrovibrio acetiphilus DSM 12809] gi|290885511|gb|ADD69211.1| protein-export membrane protein SecF [Denitrovibrio acetiphilus DSM 12809] Length = 303 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 167/302 (55%), Gaps = 1/302 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F LI FM IS L I S+ ++FT G N+GIDF GG + + + Sbjct: 1 MFELIKTGTQFDFMSKTKIFFVISGLVFILSLGIVFTKGFNFGIDFAGGTIIQMQFSSAP 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 D+ +RS ++SL IG++ QNF + L+R++ D ++ T Sbjct: 61 DVDKIRSAMDSLDIGEVVIQNFGAPEEILIRVEKTERDLNEVANTIKESMGN-TFPDNEF 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP++ +L K V+ S I +LIY+ RF+ FA+GA+ + D+ TLG Sbjct: 120 IVERVEQVGPQVGADLKSKATYAVLYSLIGVLIYVAFRFQLIFAVGAVLAISHDVVITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F++ G E LT +AA+LT++GYS+ND +VV+DR+R+NM+ T + + LI+KS+NETL Sbjct: 180 IFSIAGKEITLTIIAALLTIVGYSLNDTIVVFDRIRENMQEDKTDMDLKKLINKSLNETL 239 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R+V TS+ ++V + ++GG VI FA + GIVV SSI IA+ + + + + Sbjct: 240 SRTVLTSLTTLLAVGSLYLFGGEVINGFAFALLMGIVVGTYSSIGIASAFVYVLTKKKRE 299 Query: 830 NA 831 Sbjct: 300 AK 301 >gi|329926746|ref|ZP_08281154.1| export membrane protein SecF [Paenibacillus sp. HGF5] gi|328938946|gb|EGG35314.1| export membrane protein SecF [Paenibacillus sp. HGF5] Length = 305 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 160/299 (53%), Gaps = 9/299 (3%) Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 F+ +SI+ +I + L T GLNYG+DF+ G + + ++P+ + Sbjct: 1 MSFKNFDFVGKSRIFYVLSIVITILGLVFLLTRGLNYGVDFQSGSNVDISLSKPLTTEQI 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 + LE IG+ + + + S T + + E + + Sbjct: 61 NTVLEDAGIGEDASVTPGND-------RVNIRFSEVLTEDQDQKLRSGIEKLDEKSTFEI 113 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 V P++++EL R I V+IS I ++IY+ IRF+W FA+ AI L+ D + F++ Sbjct: 114 NTVDPEMAKELGRNAIYAVLISCIGIIIYVSIRFEWRFAIAAIVALLHDAFVVISIFSIL 173 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRS 772 G+E +LT + AVLT+IGYS+ND +V++DR+R+N++ +DL++KS+++T+GRS Sbjct: 174 GLEVDLTFIIAVLTIIGYSINDTIVIFDRIRENLRFAKIKRVSDLKDLVNKSLSQTIGRS 233 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +YT+++ FI+ M + GG I F++ + G+ A SSIFIA+P+ L + N Sbjct: 234 IYTALSVFIAAFFMLLLGGESIQMFSLAICIGLAFGAYSSIFIASPLWLLLKGRNVNNK 292 >gi|126732592|ref|ZP_01748389.1| protein-export membrane protein SecF [Sagittula stellata E-37] gi|126706876|gb|EBA05945.1| protein-export membrane protein SecF [Sagittula stellata E-37] Length = 322 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 112/305 (36%), Positives = 178/305 (58%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+ D + F +GIS L + ++ F GLNYGIDF+GG + + P Sbjct: 1 MRLRLVKDDLNWDFFSRSKLWLGISGLMVVIALASFFIQGLNYGIDFRGGTTIRTESAEP 60 Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD+ R L SL +GD D + +VR+ Q G+ T V++ + + Sbjct: 61 VDVGAYRDALASLGLGDIVISEVFDPNFRDDQNVAMVRIGAQDGEEAVSTEVIDSAEAAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 E+ P + E VGPK+S+ELI+ ++ V ++ A+L+YIW+RF+W FALGA+ LI Sbjct: 121 KEVAPDIRFTSVESVGPKVSQELIQTAVLAVGLAIAAVLVYIWLRFEWQFALGAVIALIH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+ I F+L +AA+LT++GYS+ND VVV+DR+R+N+ Y S +++++ Sbjct: 181 DVALTIGIFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLIKY-KSKDLKEVLN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SINET+ R++ TS+ ++++ + V GG VI F M +G++V SSIF+A+ LL Sbjct: 240 MSINETMSRTIMTSLTTLLALIALLVLGGDVIRGFVFAMTWGVIVGTYSSIFVASAFLLR 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|90407019|ref|ZP_01215209.1| protein export protein SecD [Psychromonas sp. CNPT3] gi|90311890|gb|EAS39985.1| protein export protein SecD [Psychromonas sp. CNPT3] Length = 620 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 165/526 (31%), Positives = 273/526 (51%), Gaps = 39/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + LGLDLRGG H ++EVD D+ VN +LRS L+++ I Sbjct: 104 NLAPATPAWLSAIGATPLKLGLDLRGGVHFLMEVDMDEAVNKSQVQMVQDLRSELREQKI 163 Query: 87 GVFSMRQIQNK--ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144 +R+ +N + + F + + + +N E + Sbjct: 164 RFRGIREAKNTSAVIIRFVNEEMLDQAIQHLK--------PINPGYAFTDEQVKNEFVLK 215 Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204 I ++ + + A++Q++ I+R R++++G++E +QR GS RI+++LPG QD +R ++ Sbjct: 216 IEMTDEKLRAIKEDALQQNLGILRNRVNELGVAEPLVQRQGSDRIVVELPGIQDTARAKE 275 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFL-----RDSDGNQYLVEDKVEISGIHLNGATA 259 +LG TA + FH V + G + G +++ K+ ++G H+ A + Sbjct: 276 ILGATATLEFHAVDSTTDINDALSGRLPASSIIHKTRSGRPVVIKKKIILTGNHIVDAQS 335 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------------ 301 + D +P V IS D G + T+ NIGKP+A + Sbjct: 336 SNDEYG-RPQVSISLDSQGGSKMSRFTKHNIGKPMATLFIEYLPTGKKKANGKVIIEKRE 394 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + QA +I+G A LA +LRAG+L + IVEER +G LG +I Sbjct: 395 EIANVATIQAQLGRSFRITGLDNAAEAHNLALLLRAGALIAPIQIVEERTIGPSLGEQNI 454 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420 G A+ GL + LFM++ Y K+G VA+ + N+++ + L+S+L ATLTLP IAGI Sbjct: 455 GNGIKAMAYGLFAVCLFMLIYYRKFGAVANCVLIFNIVMIIGLMSMLPGATLTLPGIAGI 514 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VL +G+AVD+N+L+ ERIREE + +SV ++ G++ A+STI D+NIT I V+LF Sbjct: 515 VLTVGMAVDANVLIFERIREELLEGKSVQRAIHEGYANAFSTIADANITTFITAVILFAV 574 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDI 525 G G+++GFA+T+ + I SMFT+I RA++ +K + I Sbjct: 575 GTGSIKGFAVTLMIGIATSMFTSIFGTRAIVNALWGGRNDIKKLSI 620 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 89/220 (40%), Gaps = 5/220 (2%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 + L R G A + + ++ I +GP + + I GI + Sbjct: 403 QAQLGRSFRITGLDNAAEAHNLALLLRAGALIAPIQIVEERTIGPSLGEQNIGNGIKAMA 462 Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYS 733 A+ +++ I ++ F A LI +I +G ++ G L +A ++ +G + Sbjct: 463 YGLFAVCLFMLIYYR-KFGAVANCVLIFNIVMIIGLMSMLPGATLTLPGIAGIVLTVGMA 521 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 V+ V++++R+R+ + S + I + ++ FI+ + + G Sbjct: 522 VDANVLIFERIREELLE---GKSVQRAIHEGYANAFSTIADANITTFITAVILFAVGTGS 578 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 I FA+ + GI + +SIF I+ ++ R ++ Sbjct: 579 IKGFAVTLMIGIATSMFTSIFGTRAIVNALWGGRNDIKKL 618 Score = 40.8 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 26/119 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W IL + + L A PN + + Sbjct: 4 KFPMWKYILLCFVIVVSFLYAAPNLYGEDPAVQ-------------------VSATRGAK 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + S L++ I S + +I + + S + D + L+ Sbjct: 45 VE-------NQTFERVNSLLQENNITAKSSKLENGQILIRLSSSTDQLMARDIIKNELK 96 >gi|127513263|ref|YP_001094460.1| preprotein translocase subunit SecD [Shewanella loihica PV-4] gi|126638558|gb|ABO24201.1| protein-export membrane protein SecD [Shewanella loihica PV-4] Length = 616 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 159/522 (30%), Positives = 275/522 (52%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + R+ L+ E I Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMSEAIRKMTEAKIADFRTDLRGEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D+ + + + ++ + Sbjct: 164 RYAGIRNTPKGIEIKFRDAENLAKAERFLKSRTN--------EMVFVDASSGSDFMLLAN 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ + QV A++Q++ +R R++++G++E +QR G+ RI+++LPG QD +R + +L Sbjct: 216 MSEIYLKQVKEEALQQNITTLRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKDIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFM-----FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + +G + ++ +V ++G H+ GA +F Sbjct: 276 GATASIEFHMVDEKADAAAIAAGRVSPGSQIYDRREGGKVALQKEVMLTGDHIQGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP--------------- 306 D + +P V I+ D G F VT+DNIGKP+A + Sbjct: 336 DEYS-RPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGAKNPDGSVKMDKIEEV 394 Query: 307 --VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 V G+ + A LA +LRAG+L ++IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVINGLDHSEAQSLALLLRAGALIAPVSIVEERTIGPSLGAENIDNG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+ ++++FM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 LQAMIWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFTAI R+++ I K++K + I Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKKLSI 616 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 90/234 (38%), Gaps = 6/234 (2%) Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 S+++ I + + + + ++ +I +G Sbjct: 384 GSVKMDKIEEVISVATIQARLGRNFVINGLDHSEAQSLALLLRAGALIAPVSIVEERTIG 443 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIE 717 P + E I G+ +I +LI++ + ++ F L A L ++ +G ++ G Sbjct: 444 PSLGAENIDNGLQAMIWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGVMSMIPGAV 502 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ S + I + ++ Sbjct: 503 LTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAFSTIADANI 559 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 F++ L + G + FA+ + GI + ++I I+ R K Sbjct: 560 TTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKK 613 >gi|319764882|ref|YP_004128819.1| protein-export membrane protein secf [Alicycliphilus denitrificans BC] gi|330827087|ref|YP_004390390.1| protein-export membrane protein SecF [Alicycliphilus denitrificans K601] gi|317119443|gb|ADV01932.1| protein-export membrane protein SecF [Alicycliphilus denitrificans BC] gi|329312459|gb|AEB86874.1| protein-export membrane protein SecF [Alicycliphilus denitrificans K601] Length = 317 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 161/302 (53%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S + ++ L T GL+ ++F GG + V + D Sbjct: 1 MEFFRIKKDIPFMKYALVLNAVSFITFALAVFFLVTRGLHLSVEFTGGTVMEVAYAQTAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR + +L D+ QNF ++ ++RL Q G + AQ E V + P T Sbjct: 61 IGKVRDKVAALGYPDVVVQNFGTSRDVMIRLPVQKGVTSAQQS--EQVLAALKSEDPGVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL+ G++ + + + ++IY+ +RF+W F + AI + D+ LGF Sbjct: 119 LRRTEFVGPQVGEELVHGGLMALGMVVLGIVIYLALRFEWKFGVAAIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +A VL ++GYSVN+ VV++DR+R+ + + ++ ++ID +I T+ Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LNTHEVIDHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M +GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|254506770|ref|ZP_05118910.1| protein-export membrane protein SecD [Vibrio parahaemolyticus 16] gi|219550351|gb|EED27336.1| protein-export membrane protein SecD [Vibrio parahaemolyticus 16] Length = 607 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 154/524 (29%), Positives = 276/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + N + LGLDLRGG H ++EVD D + + + RS L++ + Sbjct: 93 NLAPATPDWLESIGANPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKL 152 Query: 87 GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + ++ + + D + ++ Sbjct: 153 RYRAIRPAGKDGVEVLLRNAEQLAEAEALLKKN--------HPDMIFVDSDSNGRFALTA 204 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 205 TFTEQRLTEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264 Query: 206 LGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G +D DG +++ +V + G + ++ Sbjct: 265 LGATATLEFREVDSQADLAAAVNGRAPAGSEIKQDRDGRPVVLKKRVILGGQSITD-ASS 323 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + +R NIGK +A V Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMAAFSRQNIGKLMATVFAEYKDSGRRTPEGRVILNKHEE 383 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A++ G+V ++LF +V Y K+GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 444 MGIQAMIWGMVAVMLFTLVYYRKFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 503 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ K++ + I Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLAYGGKRINKLSI 607 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 91/213 (42%), Gaps = 5/213 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI +I +A Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQAMIWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMLFTLVYYR-KFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G I FA Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ GI+ + ++I I+ Y + N Sbjct: 572 VTLSIGILTSMFTAIVGTRCIVNLAYGGKRINK 604 >gi|323491588|ref|ZP_08096767.1| preprotein translocase subunit SecD [Vibrio brasiliensis LMG 20546] gi|323314164|gb|EGA67249.1| preprotein translocase subunit SecD [Vibrio brasiliensis LMG 20546] Length = 607 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 156/524 (29%), Positives = 276/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L++E I Sbjct: 93 NLAPATPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREEKI 152 Query: 87 GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + + Q V + + D + + Sbjct: 153 RYRAIRPSGKDAVEVLLRNEEQLAEA--------QRVLEQNHPDMIFVDSASDGRFSLIA 204 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 205 TFTEQRLTEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264 Query: 206 LGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G +D DG +++ +V + G + ++ Sbjct: 265 LGATATLEFREVDSKADLAAAASGRAPAGSEIKQDRDGRPVVLKKRVILGGSSITD-ASS 323 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + +R NIGK +A V Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMAAFSRQNIGKLMATVFAEYKDSGRRTPEGKVILTKHEE 383 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A++ G+V ++LF ++ Y K+GL+A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 444 MGIQAMIWGMVAVMLFTLMYYRKFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 503 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R +S ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ K++ + I Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLAYGGKRINKLSI 607 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 91/213 (42%), Gaps = 5/213 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI +I +A Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQAMIWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMLFTLMYYR-KFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ S + I + ++ I+ + + G I FA Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ GI+ + ++I I+ Y + N Sbjct: 572 VTLSIGILTSMFTAIVGTRCIVNLAYGGKRINK 604 >gi|148263781|ref|YP_001230487.1| preprotein translocase subunit SecF [Geobacter uraniireducens Rf4] gi|146397281|gb|ABQ25914.1| protein translocase subunit secF [Geobacter uraniireducens Rf4] Length = 302 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 5/297 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRP 588 + I F+ R +S + SI I + N GIDF GG + + P Sbjct: 1 MELISKTKIDFIGMRKISFAVSAIISIIGIIGIIQIARGAANMGIDFSGGTAMQLKFTAP 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + R +L + D+ Q L++++ + ++ + KK P Sbjct: 61 ITTEEARRSLAKNGVKDVDMQEIKEGNKLLIKMRKTTLATGKVADSVQDILKKEFPANPY 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + +TE +GP I +L + ++ V IS + +++YI RF + F +GA+ + D+ Sbjct: 121 TVESSTE-IGPSIGDKLRKDTLIAVAISMLGIILYIAWRFDFKFGVGAVVATMHDVLAIF 179 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 F + E NL + AVLT+ GYS+ D VVV+DR+R+N+ S + +KSINE Sbjct: 180 AVFFVLNKEVNLLLITAVLTIAGYSLTDTVVVFDRIRENLHKNMK-ESMPTVFNKSINEV 238 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 L R++ TS+ F++ + ++GG VI FA + G+VV SSIF+A+PI+ Sbjct: 239 LSRTIITSLTTFLAATSLFLFGGDVIHDFAFALVVGVVVGTYSSIFVASPIVALWEK 295 >gi|315634697|ref|ZP_07889981.1| protein-export membrane protein SecD [Aggregatibacter segnis ATCC 33393] gi|315476645|gb|EFU67393.1| protein-export membrane protein SecD [Aggregatibacter segnis ATCC 33393] Length = 616 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 164/524 (31%), Positives = 281/524 (53%), Gaps = 39/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + N + GLDLRGG ++EVD + + + D LR+ L+KE Sbjct: 104 NLAPATPKWLSSIGGNPMKWGLDLRGGVRFLMEVDMNSALTKRQEQLQDSLRTELRKEKY 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +++ +N +S + L V L + ++ +S+ Sbjct: 164 QYSAIKSAENFSTIVSLVNPEQ-----------LSDVQRYLRKQHPTLDIRAISDNTLSL 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+++LPG QD +R +++ Sbjct: 213 ALSDAALNEARESAIEQNLSILRKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + + G+ D + ++ + + G H+ A++ Sbjct: 273 LGATATLEFRLVNGNANLEAAARGMVTSDSEVKYDRNNRPIVLYKRAVLGGEHITNASSG 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D T +P V ++ D G + TR NI KP+A + + Sbjct: 333 VDQNTSRPQVSVTLDSEGGEIMSQTTRANIQKPMATLYVEYKDSGKKDENGKTILQKHEE 392 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q + QI+G + A LA +LR+G+L + IVEER +G LG+ ++ Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVE 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A GL+++V FM++ Y K+GL+A+ ++ N++L + L+SLL ATLT+P IAGIV Sbjct: 453 QGLQASFWGLMIVVAFMVIYYRKFGLIANVALIANIVLLVGLMSLLPGATLTMPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G++VD+N+L+ ERI+EE R + V ++ G+S A+S+IFD+N+T ++ V L+ G Sbjct: 513 LAVGMSVDANVLIFERIKEEIRNGRPVQQAISEGYSGAFSSIFDANLTTILTAVALYAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G ++GFAIT+ L I ISMFTAI+ RA++ F+ K++ + I Sbjct: 573 TGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKRIDKLSI 616 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 80/174 (45%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +G+ + ++ ++ I ++ F L A LI +I +G +L Sbjct: 441 TIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYR-KFGLIANVALIANIVLLVGLMSLLP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ +G SV+ V++++R+++ ++ + I + + Sbjct: 500 GATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIR---NGRPVQQAISEGYSGAFSSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ ++ + + G I FAI ++ GI ++ ++I I+ F+Y + Sbjct: 557 ANLTTILTAVALYAVGTGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKR 610 Score = 46.2 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG+L ALPN + + RG Sbjct: 4 RYPLWKNLMVIFLVAIGILYALPNLYGEDPAVQISGT------------RG--------- 42 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 E+++ LK+ + S+ I + F ++ + DK+T L Sbjct: 43 -----QEANSSVLSEVQTVLKENNLATKSIVLENGSILVRFNNTDNQLLAKDKITEKL 95 >gi|221069819|ref|ZP_03545924.1| protein-export membrane protein SecF [Comamonas testosteroni KF-1] gi|220714842|gb|EED70210.1| protein-export membrane protein SecF [Comamonas testosteroni KF-1] Length = 318 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS + ++ LF+ GL+ ++F GG + V +P D Sbjct: 1 MEFFRIKKDIPFMRYALVFNAISFITFALAVFFLFSRGLHLSVEFTGGTVMEVAYTQPAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR + L D+ QNF K+ ++RL Q G + AQ E V + T Sbjct: 61 IGKVRETVSKLGYADVIVQNFGTSKDVMIRLPVQKGVTTAQQS--EQVITALKAEDAEVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL+ G++ + + + ++IY+ RF+W F + AI + D+ LGF Sbjct: 119 LRRTEFVGPQVGDELMHNGLMALGMVVLGIIIYLAFRFEWKFGVAAIIANLHDVIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +A VL ++GYSVN+ VV++DR+R+ + + +S ++ID +I T+ Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LSTHEVIDHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M +GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|317047146|ref|YP_004114794.1| protein-export membrane protein SecF [Pantoea sp. At-9b] gi|316948763|gb|ADU68238.1| protein-export membrane protein SecF [Pantoea sp. At-9b] Length = 322 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 161/301 (53%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L I FMR IS L + SI ++ G N+G+DF GG + + + Sbjct: 5 YNIEQLNHGRKVIDFMRWDTLAFIISGLLIVASIAIVGVRGFNWGLDFTGGTVIEINLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P +L +R L + QNF ++ +VR+ G Q ++V Sbjct: 65 PAELDTLREALVKAGFQEPLVQNFGSSRDVMVRMAPVQG-PAGQELGNKVVSVINETAQQ 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+LIYI IRF+W ALG + L D+ T Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGAMALLSALIAILIYIGIRFEWRLALGTVLALAHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G AL IE +LT VA+++++IGYS+NDK+VV DR+R+N + S+ D+ + S+ + Sbjct: 184 CGILALTHIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS+ +L + ++GG+++ F++ M G+ + SSI++++ + L + R Sbjct: 243 TLSRTLITSLTTLAMILILFIFGGALLKGFSLTMLIGVTIGTVSSIYVSSALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|186477276|ref|YP_001858746.1| preprotein translocase subunit SecF [Burkholderia phymatum STM815] gi|184193735|gb|ACC71700.1| protein-export membrane protein SecF [Burkholderia phymatum STM815] Length = 316 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 154/297 (51%), Gaps = 3/297 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS+L I ++ L GL+ ++F GG + V V Sbjct: 1 MEFFRIRKDIPFMQRALVFNAISLLTFIAAVFFLLHRGLHLSVEFTGGTVIEVQYPGAVP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR L + GD QNF ++ L+RL + G + AQ + V + + Sbjct: 61 LEPVRDTLTRIGYGDAQVQNFGTSRDVLIRLPLKQGLTSAQQS--DQVMASLKGQDANAK 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + ++IY+ RF+W +A+ + + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVAGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + +S ++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKLSVIEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 R++ T + VL M ++GG + FA+ + GI+ SS+F+AA + ++ R Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKR 294 >gi|170718437|ref|YP_001783655.1| preprotein translocase subunit SecD [Haemophilus somnus 2336] gi|168826566|gb|ACA31937.1| protein-export membrane protein SecD [Haemophilus somnus 2336] Length = 616 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 159/524 (30%), Positives = 285/524 (54%), Gaps = 39/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + GLDLRGG ++EVD ++ + D LR+ L+KE Sbjct: 104 NLAPATPKWLTNIGGRPMKWGLDLRGGVRFLMEVDMHTALDKRQEQLQDSLRTELRKEKY 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+R +N ++ A ++ + Q +N + +E +S+ Sbjct: 164 QYTSIRNGENFTTLITLAKPEQLSDVQRFLRKQHQNLN-----------VNAISENTLSL 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS+N + ++ HAIEQ++ I+R+R++++G++E IQR G+ RI+++LPG QD +R +++ Sbjct: 213 ELSENALREIRDHAIEQNLSILRRRVEELGVAEPVIQRQGAERIVVELPGVQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + + G+ D +G+ ++ + + G H+ A++ Sbjct: 273 LGATATLEFRLVNQNANLDVALKGMVPSDSEVKYDRNGSPIVLYRRAVLGGEHITNASSG 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D T P V ++ D G + T+ N+ KP+A + + Sbjct: 333 IDQNTGSPQVSVTLDSEGGEIMSQTTKLNLKKPMATLYVEYKDSGKKDEHGKTILAKHEE 392 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q + QI+G + A L+ +LR+G+L + I+EER VG LG+ ++ Sbjct: 393 VINVATIQGRFGSQFQITGINSPAEAQNLSVLLRSGALTAPIQIIEERTVGPSLGAQNVE 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GL + ++F++ Y +GL A ++ N+IL + ++SLL ATLT+P IAGIV Sbjct: 453 QGLKAGLWGLAITIIFILFYYKLFGLFAGIALIANMILLVGIMSLLPGATLTMPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G++VD+N+L+ ERI+EE +++ +++ G+S A+++IFD+N+T ++ +VVL+ G Sbjct: 513 LSVGMSVDANVLIFERIKEEINNGRTIQQAINEGYSGAFTSIFDANLTTILTSVVLYAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L + ISMFTAI+ R ++ I K+++ + I Sbjct: 573 TGPVKGFAITLSLGVAISMFTAITGTRFLVNLIYGGKRVEKLSI 616 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 78/172 (45%), Gaps = 5/172 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716 GP + + + +G+ + +I+I +K F L A LI ++ +G +L G Sbjct: 443 GPSLGAQNVEQGLKAGLWGLAITIIFILFYYKL-FGLFAGIALIANMILLVGIMSLLPGA 501 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 + +A ++ +G SV+ V++++R+++ + + + I++ + + Sbjct: 502 TLTMPGIAGIVLSVGMSVDANVLIFERIKEEI---NNGRTIQQAINEGYSGAFTSIFDAN 558 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + + G + FAI ++ G+ ++ ++I ++ IY + Sbjct: 559 LTTILTSVVLYAVGTGPVKGFAITLSLGVAISMFTAITGTRFLVNLIYGGKR 610 Score = 40.8 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 30/133 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ IG+L +LPN + + G+ Sbjct: 4 RYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQI----------------SGTR----GQ 43 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF----KENIADKVTL 117 D +++ L++ + + S+ I F ++ K+ I +++ Sbjct: 44 TADI------NVLTNVQTLLEQNNLPIKSIILENGSILARFNNTDDQLLAKDKIIEQLGN 97 Query: 118 FLQGVNSKLNVDP 130 + P Sbjct: 98 NYSVALNLAPATP 110 >gi|251790675|ref|YP_003005396.1| preprotein translocase subunit SecD [Dickeya zeae Ech1591] gi|247539296|gb|ACT07917.1| protein-export membrane protein SecD [Dickeya zeae Ech1591] Length = 604 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 172/537 (32%), Positives = 291/537 (54%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 89 VVALNLAPATPTWLR---------VLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LRS L+++GI S+R+ N + + F DS+ ++N + L + Sbjct: 140 MDSLRSELREKGIQYASVRKSDNYGVEILFRDSQPRDNAVN-----------YLTPRHRD 188 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ ++ + V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++ Sbjct: 189 LVISSSGNDTLRAVMSDVRLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVE 248 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G DG + +V Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDPVAMSNGRVPGDTEVMNMRDGGPIALFKRV 308 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T+ + + ++P V+IS D G T+ N+GKP+A + + Sbjct: 309 ILTGDHITDSTS-GNDEYNRPQVNISLDSAGGNLMLNFTKGNVGKPMATLFVEYKDSGKK 367 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 368 DANGRAILEKQEEVINVATIQSPLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEE 427 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LG +I +G A +AGL + +LFMI Y K+G++A ++ LN++L + ++SLL Sbjct: 428 RTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYKKFGMIATSALLLNLVLVVGVMSLLP 487 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE +SV ++D G+ A+S+IFD+N+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANV 547 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 548 TTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 604 Score = 119 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 76/177 (42%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ +K F + A + L+L++ +G +L Sbjct: 429 TIGPTLGMQNITQGLEACLAGLAVSILFMIFFYK-KFGMIATSALLLNLVLVVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + S + ID+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYRGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANVTTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKK 601 >gi|82703541|ref|YP_413107.1| preprotein translocase subunit SecF [Nitrosospira multiformis ATCC 25196] gi|82411606|gb|ABB75715.1| protein translocase subunit secF [Nitrosospira multiformis ATCC 25196] Length = 310 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 96/302 (31%), Positives = 165/302 (54%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM + IS++ I ++ L T GLN G+DF GG + V +P D Sbjct: 1 MEFFRFKRDIPFMSWGKYTTAISLVTFIAAVFFLVTKGLNLGVDFTGGTVMEVSYTQPAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ +R L L + D S QNF ++ L+RL + S A ++ E V + + Sbjct: 61 LNRIRGTLIKLGMADASVQNFGTSRDVLIRLPAKADMSSA--KLSETVIAALHADDETAE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL+ G + ++I ++ ++ Y+ +RF+W F + I + D+ LGF Sbjct: 119 LRRVEFVGPQVGKELVENGALALLIVSLGIVAYLAMRFEWKFGVSGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+LT +AA+L ++GYSVN+ VVV+DR+R+N + S +ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAAILAILGYSVNESVVVFDRIRENFRKM-RRASVAQVIDNAITRTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + V+ M ++GG + FA+ + GI+ SS+ +A+P+L+ + R Sbjct: 238 RTIITHGSTQMVVVSMLLFGGESLHYFALALTIGILFGIYSSVLVASPLLMLLGVSRKDI 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|145218833|ref|YP_001129542.1| preprotein translocase subunit SecF [Prosthecochloris vibrioformis DSM 265] gi|145204997|gb|ABP36040.1| protein translocase subunit secF [Chlorobium phaeovibrioides DSM 265] Length = 311 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 144/309 (46%), Gaps = 11/309 (3%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 I +I F+ R IS+L + + L GLNYGIDF+GG ++ + + V + Sbjct: 1 MRIFSNTSIDFLGRRKIAYAISLLLLLTGLVSLAVRGLNYGIDFRGGSEVVLRFEQDVPV 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 +RS + + Q + L + + L I Sbjct: 61 GELRSVMRDAGVSGTIKQY---GMDRSFLLSTVFNGDTNELKSLISGALNSQLKGNPFEI 117 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + VGP I+ +L + + +A+LIY+ IRF+ FA + + D+ LG F Sbjct: 118 VRIDAVGPSIASDLKWSAFKAMGAALLAILIYVGIRFELKFAAAGVVAIFHDVLIVLGLF 177 Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 +L G +E + + +AA LT+ GYS+ D VVVYDR+R+N++ + + ++S Sbjct: 178 SLLGGVFEVMPLEMDQSIIAAFLTIAGYSITDTVVVYDRIRENIR-NRKPSEYEQIFNES 236 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +N TL R++ TS ++VL + ++ G I +FA + GI+V SS+F+AAP+ Sbjct: 237 MNRTLSRTIITSCTTLLTVLVLFIFAGPAIRAFAFAVFAGILVGTYSSVFVAAPLAFEWI 296 Query: 825 DWRAKNARI 833 ++ Sbjct: 297 KRSKAPVKL 305 >gi|237800023|ref|ZP_04588484.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022878|gb|EGI02935.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. oryzae str. 1_6] Length = 303 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 162/286 (56%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S + Q+F + LVR+ + Q + + + ++ E V Sbjct: 63 LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKSGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++++ + V+GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIVALWVFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|320540312|ref|ZP_08039964.1| putative SecYEG protein translocase auxillary subunit [Serratia symbiotica str. Tucson] gi|320029632|gb|EFW11659.1| putative SecYEG protein translocase auxillary subunit [Serratia symbiotica str. Tucson] Length = 600 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 168/534 (31%), Positives = 288/534 (53%), Gaps = 42/534 (7%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P++L + + LGLDLRGG H ++EVD + + + Sbjct: 88 FVVALNLAPATPSWLVMLGAE---------PMKLGLDLRGGVHFLMEVDMNTALGKLQEQ 138 Query: 73 YSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+++GI S+R+ N + + F D ++ S + + Sbjct: 139 TMDTLRSELREKGIPYASIRKLSNNGVEVHFRDDATRDKAI-----------SYMGPRQR 187 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 +L + + LS + + +A++Q++ I+R R++Q+G++E +QR G+ RI++ Sbjct: 188 DLVLSSNGSNTLKANLSDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGTDRIVV 247 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-SDGNQYLVEDKVEIS 250 +LPG QD +R +++LG TA + F V + G + G ++ DG+ ++ +V ++ Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNTTAAASGRVPGDSEVKYTRDGHPIVLYKRVILT 307 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306 G H+ +T++ D +P V+IS D G T+DNIGKP++ + + Sbjct: 308 GNHITDSTSSTDEYN-QPQVNISLDSAGGTSMSNFTKDNIGKPMSTLFVEYKDSGKKDAN 366 Query: 307 --------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 Q+ +I+G A LA +LRAG+L + IVEER + Sbjct: 367 GRAVLVKQEEVINVANIQSRLGNSFRITGIGNANEARQLALLLRAGALIAPIQIVEERTI 426 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-AT 411 G LG +I +G A + GLV ++FM+ Y K+G++A ++ N++L + ++SLL AT Sbjct: 427 GPTLGQQNIAQGLEACLWGLVASIIFMVAWYRKFGMIATTALVANLVLIVGVMSLLPGAT 486 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LT+P IAGIVL + +AVD+N+L+NERI+EE + +SV ++ G+ A+S+I D+NIT L Sbjct: 487 LTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSVQQAIHEGYKGAFSSIVDANITTL 546 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 I V+L+ G G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 547 ITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 600 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 99/253 (39%), Gaps = 5/253 (1%) Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + L D +N ++ + N ++ L G A + Sbjct: 349 PMSTLFVEYKDSGKKDANGRAVLVKQEEVINVANIQSRLGNSFRITGIGNANEARQLALL 408 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + ++ I +GP + ++ I +G+ + +A +I++ ++ F + A T Sbjct: 409 LRAGALIAPIQIVEERTIGPTLGQQNIAQGLEACLWGLVASIIFMVAWYR-KFGMIATTA 467 Query: 700 LILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 L+ ++ +G +L G + +A ++ + +V+ V++ +R+++ +K S + Sbjct: 468 LVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSVQ 524 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 I + V ++ I+ + + G I FAI A G+ + ++I Sbjct: 525 QAIHEGYKGAFSSIVDANITTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRA 584 Query: 819 ILLFIYDWRAKNA 831 I+ +Y + N Sbjct: 585 IVNLLYGGKRINK 597 >gi|312962922|ref|ZP_07777409.1| protein-export membrane protein SecF [Pseudomonas fluorescens WH6] gi|311282949|gb|EFQ61543.1| protein-export membrane protein SecF [Pseudomonas fluorescens WH6] Length = 304 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 88/286 (30%), Positives = 163/286 (56%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R G ++L ++ ++ F GLNYG+DF GG + + +P D+++VR+ Sbjct: 3 RTINFMGVRNIAFGATVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEKPADVTLVRNE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + Q+F + LVR+ + Q ++++ E V Sbjct: 63 LVKAGYHEAIVQSFGATTDLLVRMPGEDPQLGHQVAEALQ----KVGGDNPASVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ + ++IY+ RF+W F +GAI +LI D+ T+G A F I Sbjct: 119 GPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVIVTVGILAYFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ + + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ATLIENINISTTQTLLRTMATSI 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ + ++GG + F++ + G++ SSI+IA +L+++ Sbjct: 238 STLLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWL 283 >gi|307728501|ref|YP_003905725.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1003] gi|307583036|gb|ADN56434.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1003] Length = 316 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 154/302 (50%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS+L + ++ L GL+ ++F GG + V Sbjct: 1 MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLLHRGLHLSVEFTGGTVIEVQYPGAAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR L L D QNF ++ L+RL + G + AQ + V + P Sbjct: 61 LDPVRGTLNRLGYADAQVQNFGTSRDVLIRLPLKQGLTSAQQS--DQVMSALKTDTPQVQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + + ++IY+ RF+W +A+ + + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVVGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ ++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVIEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M ++GG + FA+ + GI+ SS+F+AA + ++ R Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|296115191|ref|ZP_06833832.1| bifunctional preprotein translocase subunit SecD/SecF [Gluconacetobacter hansenii ATCC 23769] gi|295978292|gb|EFG85029.1| bifunctional preprotein translocase subunit SecD/SecF [Gluconacetobacter hansenii ATCC 23769] Length = 509 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 198/517 (38%), Positives = 307/517 (59%), Gaps = 15/517 (2%) Query: 11 YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70 IC IGL + LPNF+ Q +P ++ LGLDLRGGS+L+L+VD + + L Sbjct: 4 VIGICLIGLALCLPNFMRQPAQS-----IPWRQVHLGLDLRGGSYLLLQVDMNSVTSDRL 58 Query: 71 QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 + +DE R L K G+G ++ + +T + E + + P Sbjct: 59 RTLTDETRQTLLKGGLGYRNLTTGTHAVTFAPRAPAEAEADLKALR-------AMPMNVP 111 Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 + + T + IS+ LS Q AI QS+EI+R+RID G + I R G RI+ Sbjct: 112 SEFTVTQTPDGLISVALSDEASHQRARDAITQSIEIVRRRIDATGAIDPQITRQGEDRII 171 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---FLRDSDGNQYLVEDKV 247 ++LPG DP R++ LLGTTAKM+FH V + + ++ + V Sbjct: 172 VELPGISDPERVKHLLGTTAKMTFHLVADSAIGSAVPPPGVTIVPMSETSQGTLPIYTHV 231 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307 ++ G L A+A+ D ++ + V+ +FD +GAR+F EVTR N+GK A+VLD +V+ APV Sbjct: 232 DVDGADLTNASASIDQQSGEWAVNFTFDSVGARQFGEVTRANVGKRFAIVLDNKVIEAPV 291 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 I AI G QI+G F+ + A +A +LRAG+LP LN++E+R++G LG+DSI G + Sbjct: 292 IRTAITGGSGQITGGFSAQQATDMALLLRAGALPAPLNVIEQRSIGPSLGADSIRAGAMS 351 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427 ++AGLVL++ FM + YG++G A+ ++ N++L +A+LS+ ATLTLP +AG++L +G+A Sbjct: 352 LLAGLVLVIAFMALFYGRFGWYANIALMANLVLMIAILSMFEATLTLPGMAGMLLTLGMA 411 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+NIL+NERIREE + ++ ++ GF RA STI DSN TAL+A V+LF FG G V+G Sbjct: 412 VDANILINERIREEIARGRTALQAMQAGFERATSTIIDSNATALLAHVMLFVFGTGPVKG 471 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 FA+T+ + I+ ++FT + + R +M+ + + Sbjct: 472 FALTITIGIVTTLFTTLVLSRMLMVRWYARTRPTVLP 508 Score = 128 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 83/201 (41%), Gaps = 4/201 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 AQ + + + + +GP + + IR G + ++ + ++ ++ + + Sbjct: 308 SAQQATDMALLLRAGALPAPLNVIEQRSIGPSLGADSIRAGAMSLLAGLVLVIAFMALFY 367 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 F A L+ ++ + ++F L +A +L +G +V+ +++ +R+R+ + Sbjct: 368 G-RFGWYANIALMANLVLMIAILSMFEATLTLPGMAGMLLTLGMAVDANILINERIREEI 426 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + + ++ A ++ + + V+G + FA+ + GIV Sbjct: 427 A---RGRTALQAMQAGFERATSTIIDSNATALLAHVMLFVFGTGPVKGFALTITIGIVTT 483 Query: 809 ASSSIFIAAPILLFIYDWRAK 829 +++ ++ +++ Y Sbjct: 484 LFTTLVLSRMLMVRWYARTRP 504 >gi|84517342|ref|ZP_01004696.1| protein-export membrane protein SecD [Loktanella vestfoldensis SKA53] gi|84508822|gb|EAQ05285.1| protein-export membrane protein SecD [Loktanella vestfoldensis SKA53] Length = 543 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 195/543 (35%), Positives = 301/543 (55%), Gaps = 31/543 (5%) Query: 10 LYSMICCIGLLIALPNFLPQSM----------------------LDRFPSAMPKNRISLG 47 + + +GL++ALPN + +PS +P ++LG Sbjct: 1 MIWLTVVVGLMLALPNGFYSRVEVANDARALIATGQTSAALEHDAGLWPSFLPSTLVNLG 60 Query: 48 LDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITLSFAD 104 LDLRGG+HL++EV D FL+ + ++R L E V + + + +++ + +D Sbjct: 61 LDLRGGAHLLVEVAVQDVHASFLEGFWPQVRDVLAAERDVVGFVTREEGPASELRVRISD 120 Query: 105 SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164 + + V + V S N+ V ++I +++ + + + Q++ Sbjct: 121 AAGAARAFELVRGLGRPVTSFTGAAAS-NIDVRINGTLLTITINEAEMSAMNERTMLQTL 179 Query: 165 EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF----HKVLPN 220 EIIR+RID++G E TIQR G R+L+Q+PG ++ LLGTTA+++F + Sbjct: 180 EIIRRRIDEVGTREPTIQRQGLERVLVQVPGVGSAQEIKDLLGTTAQLTFNPVVARTSNA 239 Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280 N G + D G Y++E + ++G L A +FD + V F+ AR Sbjct: 240 NQSPGTGNFLVPSLDDPGLFYILERRPVVTGEQLENAQLDFDQNG-RAAVGFRFNTSAAR 298 Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340 F + T NIG P A+VLD V++AP I IP G I+GNFT E A LA +LRAG+L Sbjct: 299 VFGDYTLANIGSPFAIVLDNEVISAPTIQSHIPGGSGIITGNFTTEEATNLAVLLRAGAL 358 Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 P +L +EER +G +LG DSI G A + G +L+VLFM + YG +G A+ ++ +N+ L Sbjct: 359 PAELTFLEERTIGPELGQDSIDAGRLAALVGGLLVVLFMGLSYGLFGWFANTALVINLGL 418 Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460 +LSL+GATLTLP IAGIVL +G+AVD+N+LV ERIREE + + ++++G+ RA Sbjct: 419 IFGVLSLVGATLTLPGIAGIVLTVGMAVDANVLVFERIREELKTAKGPARAIELGYERAL 478 Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 S I DSN T + V+LF G G VRGFAIT+GL I+ S+FTAI + R+++ Y++ Sbjct: 479 SAITDSNFTTFMVAVILFALGSGPVRGFAITLGLGIITSVFTAIFVTRSLISIWFAYRRP 538 Query: 521 KSI 523 K+I Sbjct: 539 KTI 541 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 84/175 (48%), Gaps = 4/175 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G + ++ + +++++ + + F A T L++++ G +L G Sbjct: 369 TIGPELGQDSIDAGRLAALVGGLLVVLFMGLSYGL-FGWFANTALVINLGLIFGVLSLVG 427 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V+V++R+R+ +K T+ I+ L + Sbjct: 428 ATLTLPGIAGIVLTVGMAVDANVLVFERIREELK---TAKGPARAIELGYERALSAITDS 484 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + F+ + + G + FAI + GI+ + ++IF+ ++ + +R Sbjct: 485 NFTTFMVAVILFALGSGPVRGFAITLGLGIITSVFTAIFVTRSLISIWFAYRRPK 539 >gi|34557612|ref|NP_907427.1| preprotein translocase subunit SecF [Wolinella succinogenes DSM 1740] gi|34483329|emb|CAE10327.1| PROTEIN-EXPORT MEMBRANE PROTEIN SECF [Wolinella succinogenes] Length = 323 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 87/294 (29%), Positives = 165/294 (56%), Gaps = 3/294 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L + F+ + +S+L S+ L FT G++YGIDF GG + V Sbjct: 1 MELFKNDKVYDFVAWGRYTSLLSLLLLALSLGLFFTKGISYGIDFTGGSVVQVQYKEAAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R L +I + + G K + P + + R + + ++ + Sbjct: 61 LGKIREALAGNEIFKGAQVSEFGSKEEALI--KVPASTSSVARDIGDIAAEVLQGTGNFE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ ++VGPK+ EL KG + +++++I ML+Y+ R++W FA+ A+ L+ D+T +G Sbjct: 119 VRRVDMVGPKVGDELRTKGTLALVLASIGMLLYVAFRYEWRFAIAAVLALVHDVTIAVGA 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF ++F L VAA+LTLIGYS+ND ++++DR+R+ + + ++++++++++TL Sbjct: 179 IVLFEVDFGLDVVAALLTLIGYSINDTIIIFDRIRERL-QGNKLDTLKEVMNEAVSKTLS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R++ TS+ F V + +GG +I F++PM G+VV + SS+FIA I++++ Sbjct: 238 RTILTSLTVFFVVFTLYAFGGEIIRGFSLPMLVGVVVGSYSSVFIAMQIVIWLG 291 >gi|258619941|ref|ZP_05714981.1| protein-export membrane protein SecD [Vibrio mimicus VM573] gi|258587674|gb|EEW12383.1| protein-export membrane protein SecD [Vibrio mimicus VM573] Length = 617 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 152/523 (29%), Positives = 276/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEESFRSDLRDEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D T + Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLSQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 INQATIQSALGRNFRITGIDSPSEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRINKLSI 617 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPSEAHNLALLLRAGA 430 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLM 606 Query: 824 YDWRAKNA 831 Y + N Sbjct: 607 YGGKRINK 614 Score = 39.3 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ I L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVMFTIAIAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S L K + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTSALDKAHLSKKSIALENGSILVRFNDTDTQISARDIISEAL 95 >gi|315645796|ref|ZP_07898917.1| protein-export membrane protein SecF [Paenibacillus vortex V453] gi|315278557|gb|EFU41871.1| protein-export membrane protein SecF [Paenibacillus vortex V453] Length = 305 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 93/299 (31%), Positives = 161/299 (53%), Gaps = 9/299 (3%) Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 F+ + +SI +I + L T GLNYG+DF+ G + + ++P+ + Sbjct: 1 MSFKKYDFVSKSRFFYILSIAITILGLVFLLTRGLNYGVDFQSGSNVDISLSKPLTTEQI 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 S L IG+ + + + S T ++ + E + + Sbjct: 61 ESVLAEAGIGEDASVTPGND-------RVNIRFSQVLTEDQDLKLRSGIEKLDDTATFEI 113 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 V P++++EL R I V++S I ++IY+ IRF+W FA+ AI L+ D + F++ Sbjct: 114 NTVDPEMAKELGRNAIYAVLLSCIGIIIYVSIRFEWRFAIAAIVALLHDAFVVISIFSIL 173 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRS 772 G+E +LT + AVLT+IGYS+ND +V++DR+R+N++ S +DL++KS+++TLGRS Sbjct: 174 GLEVDLTFIIAVLTIIGYSINDTIVIFDRIRENLRFAKIKRSSDLKDLVNKSLHQTLGRS 233 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +YT+++ FI+ M + GG I F++ + G+ A SSIFIA+P+ L + N Sbjct: 234 IYTALSVFIAAFFMLLLGGESIQMFSLAICIGLAFGAYSSIFIASPLWLVLKKRNVSNK 292 >gi|78065283|ref|YP_368052.1| preprotein translocase subunit SecF [Burkholderia sp. 383] gi|77966028|gb|ABB07408.1| protein translocase subunit secF [Burkholderia sp. 383] Length = 316 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ LF GL+ ++F GG + V + + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF +N L+RLQ + G + AQ + V + P T Sbjct: 61 LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMGALKAQSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ RF+W +A+ I + DI LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDIVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA+L ++GYSVN+ VV++DR+R+ + +S +++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|17547435|ref|NP_520837.1| preprotein translocase subunit SecF [Ralstonia solanacearum GMI1000] gi|17429738|emb|CAD16423.1| probable-export membrane transmembrane protein [Ralstonia solanacearum GMI1000] Length = 322 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 95/305 (31%), Positives = 162/305 (53%), Gaps = 4/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S L + ++ LF +GL+ ++F GG + V + D Sbjct: 1 MEFFRIRRDIPFMKHALAFNAVSFLTFLAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L VR+++E L D QNF + ++RL + G A + V + P Sbjct: 61 LPKVRADVEKLGYADAQVQNFGTSHDVMIRLPLKNGPDGKPIASAVQSQQVMSSLIATTP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +Q E VGP++ +EL G++ ++ I ++IY+ IRF+W FA+ I + DI Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + Y ++ ++ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + + VL M V+GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299 Query: 828 AKNAR 832 + Sbjct: 300 EDLVK 304 >gi|212634515|ref|YP_002311040.1| preprotein translocase subunit SecD [Shewanella piezotolerans WP3] gi|212555999|gb|ACJ28453.1| SecD/SecF/SecDF export membrane protein:SecD export membrane protein [Shewanella piezotolerans WP3] Length = 610 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 155/522 (29%), Positives = 267/522 (51%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + V + + R+ L+ E I Sbjct: 98 NLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEAVRKMTEAKVADFRTDLRAERI 157 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D+ N + + D T ++ + Sbjct: 158 RYAGIRNGARGIEIKFRDAETLANAERFLKSR--------SADMVFTDRSTGSDYFLVAN 209 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 S + Q+ A++Q++ +R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 210 PSDVYLKQIKEEALQQNITTLRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 269 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 TA + FH V N + G + +G +++ V ++G H+ Sbjct: 270 SATASIEFHMVDQNADVQAAASGRVPAGSELYQRREGGPVVLKKAVMLTGDHI-QGAQPS 328 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 + +P V I+ D G F VT+DNIG P+A + T K Sbjct: 329 YDEYSRPQVSINLDSKGGSIFSNVTKDNIGNPMATLFIEYKDTGEKNADGSVKMKKIEEV 388 Query: 322 NFTI-----------------ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + LA +LRAG+L + IVEER +G LG+++I G Sbjct: 389 ISVATIQARLGRNFVITGLGHAESQNLALLLRAGALIAPVYIVEERTIGPSLGAENIENG 448 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+ +++LFM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 449 MQAMIWGMAVVLLFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 508 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +S+ ++ G+ A+STI D+NIT + ++LF G G Sbjct: 509 VGMAVDGNVLIYERIREELRNGRSIQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 568 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFT+I R+++ I K++K + I Sbjct: 569 AVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKKLSI 610 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 91/238 (38%), Gaps = 6/238 (2%) Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 ++ S+++ I + + + + ++ I Sbjct: 374 KNADGSVKMKKIEEVISVATIQARLGRNFVITGLGHAESQNLALLLRAGALIAPVYIVEE 433 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 +GP + E I G+ +I +L+++ + ++ F L A L ++ +G ++ Sbjct: 434 RTIGPSLGAENIENGMQAMIWGMAVVLLFMLVYYR-GFGLIANLALTANLVMVVGVMSMI 492 Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G L +A ++ +G +V+ V++Y+R+R+ ++ S + I + Sbjct: 493 PGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSIQQAIHEGYGNAFSTIA 549 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 ++ F++ L + G + FA+ + GI + +SI I+ R K Sbjct: 550 DANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKK 607 >gi|330975885|gb|EGH75951.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 303 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 161/286 (56%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S + Q+F + LVR+ + Q + + ++ E V Sbjct: 63 LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIVSLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++++ + V+GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIVALWVFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|330815586|ref|YP_004359291.1| Protein export protein SecF [Burkholderia gladioli BSR3] gi|327367979|gb|AEA59335.1| Protein export protein SecF [Burkholderia gladioli BSR3] Length = 316 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 158/298 (53%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ L GL+ ++F GG L V + + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLVHRGLHLSVEFTGGTVLEVQYQQAAE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L GD Q+F +N L+RL +PG + AQ + V + Sbjct: 61 LEPVRATLGKLGYGDAQVQSFGTSRNVLIRLALKPGLTSAQQS--DQVMAGLKAQNADVQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ +++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIRRE 295 >gi|134294792|ref|YP_001118527.1| preprotein translocase subunit SecF [Burkholderia vietnamiensis G4] gi|134137949|gb|ABO53692.1| protein translocase subunit secF [Burkholderia vietnamiensis G4] Length = 316 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 95/302 (31%), Positives = 158/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ I ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFIAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR L L D QNF +N L+RLQ + G + AQ + V + P T Sbjct: 61 LEPVRDTLGKLGYADAQVQNFGTSRNVLIRLQLKQGLTSAQQS--DQVMAALKAQSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA+L ++GYSVN+ VV++DR+R+ + +S +++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|322419802|ref|YP_004199025.1| protein-export membrane protein SecF [Geobacter sp. M18] gi|320126189|gb|ADW13749.1| protein-export membrane protein SecF [Geobacter sp. M18] Length = 300 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 143/297 (48%), Gaps = 8/297 (2%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRP 588 + I F+ R S + +I I + N GIDF GG + + +P Sbjct: 1 MELIKKTNIDFIGMRKVSFIASGIMAIIGILGIIAIARGTANMGIDFSGGTAMQIKFAQP 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 VR L + ++ Q G L+++ G S K Sbjct: 61 ATTQAVRDALGKAGMKEVELQEITGGNQVLLKMHKTTGQSADSVAEA----LKQGMPSNP 116 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 T++++ +GP I +L + ++ V +S + +++YI RF + F +GA+ + D+ + Sbjct: 117 FTVESSTEIGPSIGEKLKKDTLIAVALSMLGIILYIAWRFDFKFGVGAVVATMHDVLAMV 176 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 F L E N+ + AVLT+ GYS+ D VVV+DR+R+NM + +KSINET Sbjct: 177 AVFYLMHREVNILFITAVLTIAGYSLTDTVVVFDRIRENMHKSLK-DPMITIFNKSINET 235 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 L R++ TS+ F++ + + ++GG VI FA + G++VA SSIF+A+PI+ Sbjct: 236 LSRTIITSVTTFLAAVSLFLFGGEVIHDFAFALVVGVLVATYSSIFVASPIVALWEK 292 >gi|16759385|ref|NP_455002.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142844|ref|NP_806186.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179019|ref|YP_215436.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161936225|ref|YP_151513.2| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194451842|ref|YP_002044441.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469839|ref|ZP_03075823.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734472|ref|YP_002113440.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300967|ref|ZP_02662577.2| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|198243006|ref|YP_002214361.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204927281|ref|ZP_03218483.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351719|ref|YP_002225520.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205357773|ref|ZP_02573352.2| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205358537|ref|ZP_02657436.2| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205358911|ref|ZP_02665159.2| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205359647|ref|ZP_02830985.2| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|207855889|ref|YP_002242540.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|67477420|sp|Q9ZFF8|SECD_SALCH RecName: Full=Protein-export membrane protein secD gi|25305917|pir||AG0552 protein-export membrane protein SecD [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501676|emb|CAD08863.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Typhi] gi|29138476|gb|AAO70046.1| export membrane protein SecD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126652|gb|AAX64355.1| preprotein translocase, IISP family, part of the channel [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194410146|gb|ACF70365.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456203|gb|EDX45042.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709974|gb|ACF89195.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289542|gb|EDY28905.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937522|gb|ACH74855.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204323946|gb|EDZ09141.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271500|emb|CAR36318.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205329492|gb|EDZ16256.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333358|gb|EDZ20122.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340218|gb|EDZ26982.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344259|gb|EDZ31023.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206707692|emb|CAR31976.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245690|emb|CBG23486.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992117|gb|ACY87002.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157019|emb|CBW16502.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320084683|emb|CBY94474.1| Protein-export membrane protein secD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322713478|gb|EFZ05049.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128725|gb|ADX16155.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326626752|gb|EGE33095.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987355|gb|AEF06338.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 615 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 294/524 (56%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F DS+ ++ + L + ++ + + ++ Sbjct: 164 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 615 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + L+ ++ +G +L Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + I++ Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 609 >gi|317488550|ref|ZP_07947097.1| protein-export membrane protein SecF [Eggerthella sp. 1_3_56FAA] gi|316912355|gb|EFV33917.1| protein-export membrane protein SecF [Eggerthella sp. 1_3_56FAA] Length = 376 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 78/294 (26%), Positives = 146/294 (49%), Gaps = 3/294 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I F+ R +G++ + S+ ++ GLN+GI+F GG + + V+ +RS + Sbjct: 9 INFLGYRRVFLGVAAVLVCVSLAIVGVKGLNFGIEFVGGTSVSFHSTGDVNTEQMRSAFD 68 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 D Q + + ++ + T+ V K+ + +GP Sbjct: 69 EAGEPDAVVQTTTADGDQGFLVRTTTTSAEEATQRANQVADKL---GLSTDSFEVTTIGP 125 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 +I+ ++ ++S + ++IYI IRF++ + AI L+ D+ +G +AL G E N Sbjct: 126 DWGASVIQSSLIAFLVSIVLIIIYIAIRFEYKMGVTAIVALLHDLVLVMGVYALVGREVN 185 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 +AA+LT++GYS+ D VVV+ R+ NM+ +F + + SIN+ L R++ T++ + Sbjct: 186 PNTIAALLTILGYSLYDTVVVFHRINDNMQSDDIKCTFMTMANHSINQVLVRTINTTLTS 245 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 I VL M ++GG + FA M G+V + SSI +A+P+ + ++ Sbjct: 246 LIPVLAMLLFGGETLKDFAFAMVIGLVCGSYSSIAVASPLYAMWKTREPRYQKL 299 >gi|289677971|ref|ZP_06498861.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. syringae FF5] gi|302185762|ref|ZP_07262435.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. syringae 642] gi|330895871|gb|EGH28157.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937003|gb|EGH41098.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. pisi str. 1704B] Length = 303 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 161/286 (56%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S + Q+F + LVR+ + Q + + ++ E V Sbjct: 63 LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++++ + V+GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIVALWVFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|229592458|ref|YP_002874577.1| preprotein translocase subunit SecF [Pseudomonas fluorescens SBW25] gi|229364324|emb|CAY52074.1| protein-export membrane protein SecF [Pseudomonas fluorescens SBW25] Length = 304 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 164/286 (57%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R G+++L ++ ++ F GLNYG+DF GG + + +P D+++VRS Sbjct: 3 RTINFMGVRNIAFGVTVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEKPADVTLVRSE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + Q+F + LVR+ + Q ++++ E V Sbjct: 63 LVKAGYHEAVVQSFGATTDLLVRMPGEDPQLGHQVAEALQ----KVGGDNPASVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ + ++IY+ RF+W F +GAI +LI D+ T+G A F I Sbjct: 119 GPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVIVTVGILAYFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ + + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ATLVENINISTTQTLLRTMATSI 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ + ++GG + F++ + G++ SSI+IA +L+++ Sbjct: 238 STLLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWL 283 >gi|221133853|ref|ZP_03560158.1| protein-export membrane protein SecF [Glaciecola sp. HTCC2999] Length = 313 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 92/279 (32%), Positives = 156/279 (55%), Gaps = 3/279 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L+ ++FMR R + S + I S+ L + LN+G+DF GG + V + Sbjct: 1 MRLLKINSTVKFMRLRVPALVFSTILIIASLGSLAVNQLNWGLDFTGGTLIEVGYPDAAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R L++ GD QNF ++ L+RL + G A V + V + Sbjct: 61 LDEIRRELDAASFGDAIVQNFGSSQDVLIRLAPREGVKSA--EVGDQVMLALRATGKNVD 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP + EL +G + ++ + I +LIY+ +RF+W FALG+++ L D+ TLG Sbjct: 119 MRRIEFVGPNVGEELTEQGGLAMLTALICILIYVAMRFEWRFALGSVSALAHDVIITLGL 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+ +EF+LT +AAVL +IGYS+ND +VV DR+R+N + + S ++I+ S+ +TL Sbjct: 179 FSFLQLEFDLTILAAVLAVIGYSLNDTIVVSDRIRENFRKIRKAES-EEIINISLTQTLN 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809 R++ TS+ + +L + GG++I F+ + FG+V+ Sbjct: 238 RTIITSVTTILVLLALFFVGGALIHGFSTALLFGVVIGT 276 >gi|330957509|gb|EGH57769.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. maculicola str. ES4326] Length = 303 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 160/286 (55%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R +++L ++ ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAVTMLLTVLALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + + Q+F + LVR+ + Q + + ++ E V Sbjct: 63 LVAAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGIGMLLALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAISALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|86609215|ref|YP_477977.1| preprotein translocase subunit SecF [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557757|gb|ABD02714.1| protein-export membrane protein SecF [Synechococcus sp. JA-2-3B'a(2-13)] Length = 333 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 84/260 (32%), Positives = 144/260 (55%), Gaps = 9/260 (3%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G+DF GG L + RPV +R L+ +G Q + ++ Sbjct: 58 GLDFSGGTLLDLSFERPVTTEELRRALQEHNLGSSIIQLDTQTGQEALIRMPPLSETE-- 115 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 V+ + + V E VGP + R L+R GIV V+IS +++Y+ +RF+W Sbjct: 116 ---RLAVEATLRQEVAPFQRNLVETVGPTVGRLLLRSGIVAVLISFGLIVLYLALRFQWD 172 Query: 692 FALGAITTLILDITKTLGFFALFGIEF----NLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +A+ AI L+ D+ T+G FAL G+ + V A+LT+IG+SVND VV+YDR+R+N Sbjct: 173 YAVFAIVALLHDVVLTIGLFALLGLTVGMEADSLFVVALLTIIGFSVNDTVVIYDRIREN 232 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 ++L + +S ++++ S+N+T RS+ T++ + ++ +A++GG+ + FAI + G + Sbjct: 233 LRLVSRKVSLAEVVNLSLNQTFARSLNTTLTTMLPLVAIAIFGGATLKGFAIALLIGFTL 292 Query: 808 AASSSIFIAAPILLFIYDWR 827 SSIFIA+P+L++ R Sbjct: 293 GVYSSIFIASPLLVWWRQQR 312 >gi|330815587|ref|YP_004359292.1| Protein export protein SecD [Burkholderia gladioli BSR3] gi|327367980|gb|AEA59336.1| Protein export protein SecD [Burkholderia gladioli BSR3] Length = 680 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 163/516 (31%), Positives = 262/516 (50%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + RS L+ +GI + ++ + +FAD E + + + Sbjct: 160 ASDARSQLRDKGIRDGGVNRVDLSVVANFADQDTAEQARRFLAGSITELQWATQPG---- 215 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ S V A++Q++ + R++++G+SE +Q+ G RI+++L Sbjct: 216 ----GGGYQVVGTFSPAVQATVEDAALKQNLTTLHNRVNELGVSEPILQQQGRDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L+ V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPVNLHPNPNDPVPPGDELFTQGNQAPVLLRKSVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDAAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAATDLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +GLV+ + +N++L +A LS++ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGLVSVIGLSVNLLLLVAALSMMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R + ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERIREELRSGAAPQVAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI + IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCIGILTSMFSAVFFSRGLVNLWYGGRKKLK 606 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 90/209 (43%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G+ VI +A+ +++ Sbjct: 404 TGQPTPQAATDLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVHSVIWGFVAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F L ++ L +++ + ++ L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGLVSVIGLSVNLLLLVAALSMMQATLTLPGIAAIALALGMAIDSNVLINERI 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + + + I + + +++ I+ L + +G + +FAI G Sbjct: 523 REELR---SGAAPQVAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCIG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSV 608 Score = 38.9 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 20/46 (43%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLG 47 R W ++ + IGLL LPNF ++ + S +I G Sbjct: 3 RYPIWKYVVMVVALAIGLLYTLPNFYGEAPAVQVSSGKATVKIDSG 48 >gi|298486007|ref|ZP_07004081.1| protein-export membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159484|gb|EFI00531.1| protein-export membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 303 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 160/286 (55%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S + Q+F + LVR+ + Q + + ++ E V Sbjct: 63 LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIVSLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIVALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|264680869|ref|YP_003280779.1| protein-export membrane protein SecF [Comamonas testosteroni CNB-2] gi|299531886|ref|ZP_07045286.1| preprotein translocase subunit SecF [Comamonas testosteroni S44] gi|262211385|gb|ACY35483.1| protein-export membrane protein SecF [Comamonas testosteroni CNB-2] gi|298720061|gb|EFI61018.1| preprotein translocase subunit SecF [Comamonas testosteroni S44] Length = 318 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS + ++ LF+ GL+ ++F GG + V +P D Sbjct: 1 MEFFRIKKDIPFMKYALVFNAISFITFALAVFFLFSRGLHLSVEFTGGTVMEVAYTQPAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR + L D+ QNF K+ ++RL Q G + AQ E V + T Sbjct: 61 IGKVRETVSKLGYADVIVQNFGTSKDVMIRLPVQKGVTTAQQS--ERVITALKAEDAEVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL+ G++ + + + ++IY+ RF+W F + AI + D+ LGF Sbjct: 119 LRRTEFVGPQVGDELMHNGLMALGMVVLGIIIYLAFRFEWKFGVAAIIANLHDVIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +A VL ++GYSVN+ VV++DR+R+ + + +S ++ID +I T+ Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LSTHEVIDHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M +GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|54294897|ref|YP_127312.1| preprotein translocase subunit SecF [Legionella pneumophila str. Lens] gi|53754729|emb|CAH16216.1| hypothetical protein lpl1976 [Legionella pneumophila str. Lens] Length = 305 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 165/294 (56%), Gaps = 7/294 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM AR W SIL + SI L +GL +G+DF GG Q+ + ++ D Sbjct: 1 MEFFNPNSKIDFMGARRWTALFSILIFVVSIGALMINGLKWGLDFTGGTQIEISYSKAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L ++R NL + ++ K+ L+ + + + M+ ++ E++P + Sbjct: 61 LPLIRENLNKAGFKEAQVVSYGTSKDVLISIAPR------ADKQQSMLVDQVMEVLPGAV 114 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 Q + VGP++ +EL KG + +I+S +A +IYI +RF++ A+ + LI D LG Sbjct: 115 KQRVDFVGPQVGQELATKGALAIIVSLLATMIYIAMRFEYKLAVSSAVALIHDPVLILGV 174 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FALFGIEF+L A+A +L +IGYS+ND +VV+DR+R+N S D+++ SIN+TL Sbjct: 175 FALFGIEFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKI-RRTSPIDIMNISINQTLS 233 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R++ TS+ V+ + V+GG I F++ + GIV+ SSI++A + + + Sbjct: 234 RTIMTSVLTLFVVVALFVYGGEAIYGFSLALIIGIVIGTYSSIYVAGALAVTMG 287 >gi|260221945|emb|CBA31016.1| Protein-export membrane protein secF [Curvibacter putative symbiont of Hydra magnipapillata] Length = 317 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 99/302 (32%), Positives = 167/302 (55%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS + + ++ LF+ GL+ ++F GG + V ++P + Sbjct: 1 MEFFKIRRDIPFMRNALIFNLISFVTFVAAVFFLFSRGLHLSVEFTGGTLMEVSYSQPAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +RS + SL I D+ QNF ++ L+R+ Q G + Q + V + +T Sbjct: 61 LDNIRSTVASLGINDVQVQNFGTAQDVLIRMPVQKGSTSGQQS--DKVLSALKASDASAT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL G+ + + ++IY+ IRF+W FA+ AI + D+ LGF Sbjct: 119 LRRTEFVGPQVGDELAADGLKALAFVVVGIMIYLAIRFEWKFAVAAIIANLHDVIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AAVL ++GYSVN+ VV++DR+R+N + Y ++ +ID +I T+ Sbjct: 179 FAFFQWEFSLPVLAAVLAVLGYSVNESVVIFDRIRENFRRYRK-MNTEQIIDNAITSTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M V+GG+ + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHGSTQLMVLSMLVFGGATLHYFALALTIGILFGIYSSVFVAAAIAMWLGIQREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|213163215|ref|ZP_03348925.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427841|ref|ZP_03360591.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|224582244|ref|YP_002636042.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289825050|ref|ZP_06544402.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|56128695|gb|AAV78201.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|224466771|gb|ACN44601.1| protein export protein SecD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|321225132|gb|EFX50193.1| Protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614690|gb|EFY11619.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618796|gb|EFY15684.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623503|gb|EFY20342.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629199|gb|EFY25978.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631919|gb|EFY28673.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637343|gb|EFY34045.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642029|gb|EFY38639.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647848|gb|EFY44323.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652525|gb|EFY48879.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653312|gb|EFY49645.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660539|gb|EFY56775.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664691|gb|EFY60884.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669256|gb|EFY65406.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670802|gb|EFY66935.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678960|gb|EFY75015.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681988|gb|EFY78013.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685183|gb|EFY81180.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194469|gb|EFZ79664.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196995|gb|EFZ82137.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203979|gb|EFZ88996.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206935|gb|EFZ91888.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210847|gb|EFZ95719.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214537|gb|EFZ99288.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223094|gb|EGA07437.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227044|gb|EGA11225.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230139|gb|EGA14259.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233877|gb|EGA17966.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238429|gb|EGA22487.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244117|gb|EGA28126.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246277|gb|EGA30260.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251903|gb|EGA35766.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257900|gb|EGA41579.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261087|gb|EGA44679.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264983|gb|EGA48482.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272546|gb|EGA55953.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622110|gb|EGE28455.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 604 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 294/524 (56%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F DS+ ++ + L + ++ + + ++ Sbjct: 153 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 604 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + L+ ++ +G +L Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + I++ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 598 >gi|254468161|ref|ZP_05081567.1| protein-export membrane protein SecD [beta proteobacterium KB13] gi|207086971|gb|EDZ64254.1| protein-export membrane protein SecD [beta proteobacterium KB13] Length = 630 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 161/520 (30%), Positives = 274/520 (52%), Gaps = 23/520 (4%) Query: 24 PNFLPQSML-DRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 PNF+ L P + + LGLDLRGG H +++VD + +E+R+ Sbjct: 97 PNFVVALNLLPNSPKWLESIGGQPMYLGLDLRGGVHFLMQVDLSNIEAKESSGRVNEIRT 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV----NSKLNVDPKKNLL 135 L++ I + I + + + + L K + Sbjct: 157 LLRENKIRYDQISVEDGSILVQLTNENDLKKSKSLLLQDDSSFEFSKRINLGGSIGKEKI 216 Query: 136 VTTTEKEISIVLSQNN---IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 T+ ++ + + +++ AI+Q++E + RI+++G++E IQ+ G +RI++Q Sbjct: 217 KEITDNGTFVLAIEGSQANKEEMTKFAIKQNLETLNNRINELGVAEPIIQQQGENRIVVQ 276 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG--------FMFGVRFLRDSDGNQYLVE 244 LPG QD ++ + ++G TA + V S FG D + N L++ Sbjct: 277 LPGVQDTAKAKDIIGRTALLEMRLVDDEASPADIDQAIDGNIPFGRDLFYDRNQNPLLLK 336 Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDG 300 V ++G ++N A D +T + +V ++ D GA F ++TRDNIGK + Sbjct: 337 KDVILTGENINNAGPGVDNQTGQSIVSLNLDSKGANIFKKITRDNIGKRIAILLIEKDIT 396 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 ++TAPVI I G+ QI+G + A ++ +LRAGSL + I+EER VG +G ++ Sbjct: 397 EIITAPVIKSEIGGGRVQITGMKNAQEATDVSLLLRAGSLAAPMEIIEERTVGPSMGKEN 456 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I +G + G + +++ + + Y +GL + ++ +N++L +ALLS + ATLTLP +A + Sbjct: 457 IQRGIQSTFWGFIAVIILISIYYMLFGLFSSIALSINLVLLVALLSTIQATLTLPGLAAM 516 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L +G+A+DSN+L+NERIR+E R + S+ +G+ +A+ TI DSNIT LIA + LF F Sbjct: 517 ALTVGMAIDSNVLINERIRDEIRNGNTPQASIHLGYEKAWGTILDSNITTLIAGIALFMF 576 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 G G ++GFA+ L IL SMF+AI + RA++ F K+ Sbjct: 577 GTGPIKGFAVVHVLGILTSMFSAILVSRALVNFFYGSKRK 616 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 91/212 (42%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G AQ + + + I VGP + +E I++GI IA++ Sbjct: 413 VQITGMKNAQEATDVSLLLRAGSLAAPMEIIEERTVGPSMGKENIQRGIQSTFWGFIAVI 472 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 I I I + F L + L +++ + + L +AA+ +G +++ V++ Sbjct: 473 ILISIYY-MLFGLFSSIALSINLVLLVALLSTIQATLTLPGLAAMALTVGMAIDSNVLIN 531 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R ++ + + I + G + +++ I+ + + ++G I FA+ Sbjct: 532 ERIRDEIR---NGNTPQASIHLGYEKAWGTILDSNITTLIAGIALFMFGTGPIKGFAVVH 588 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S+I ++ ++ F Y + K ++ Sbjct: 589 VLGILTSMFSAILVSRALVNFFYGSKRKIDKL 620 Score = 40.4 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + W L +I L ALPNF ++ + I G Sbjct: 3 QFSRWKNTLILLIVVFALFYALPNFFGEAPAVQI------MPIKSGE------------K 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + + +E I + +N I + ++ + + L Sbjct: 45 MDPIIASQSEKILEE-------NNITYNGVVLTENFIKIKLTNNEDQLTSKGLLEDKL 95 >gi|300310569|ref|YP_003774661.1| export membrane protein SecD transmembrane [Herbaspirillum seropedicae SmR1] gi|300073354|gb|ADJ62753.1| export membrane protein SecD transmembrane [Herbaspirillum seropedicae SmR1] Length = 634 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 166/511 (32%), Positives = 275/511 (53%), Gaps = 20/511 (3%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 I N LP + ++ ++ + LGLDLRGG H +++VD +N LQ +RS Sbjct: 108 YIVAFNLLPNTP--QWLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRS 165 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+ + I + + + I +SF D+ + + + + Sbjct: 166 LLRDKNIRHSGISRSGDSIEISFRDADTRNKARAALGEL---------QEMLLTDAGSGD 216 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + ++ L + Q ++Q++ + +R++++G++E IQR G+ RI+++LPG QD Sbjct: 217 DLKLIATLRPEALKQTQEDGVKQNISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDV 276 Query: 200 SRLRQLLGTTAKMSFHKVLP-----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254 SR + ++G TA + V FG + G ++ + ++G ++ Sbjct: 277 SRAKDIIGRTATLEVRMVDESVVRGTEETTAIPFGSELFKIGKGAPVVLNKEPVLTGDYI 336 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQA 311 + A+A+FD H+P V I + G R+ E TRD +GK +A+VL + + ++ Sbjct: 337 SNASASFDEN-HQPAVSIDLNGDGGRKMREATRDKVGKAMAIVLFEKGKGEVLTVATIRS 395 Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371 + QI+G + E A LA +LRAGSL ++I+EER +G LG+D+I KG +++ G Sbjct: 396 ELGSRFQITGMGSPEAASDLALLLRAGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYG 455 Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431 + + +FM++ Y +G + ++ +NV+L +ALLS L TLTLP IA I L +G+A+DSN Sbjct: 456 FLAMAIFMVIYYQLFGFFSALALSVNVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSN 515 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +L+NERIREE R S ++ GF RA++TI DSN+T LIA + L FG GA+RGFA+ Sbjct: 516 VLINERIREELRAGNSPQAAIAAGFDRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVV 575 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 L IL SMF+A+ R ++ KK S Sbjct: 576 HCLGILTSMFSAVFFSRGVVNLWYGRKKRLS 606 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 86/185 (46%), Gaps = 4/185 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP++ + I+KG V+ +AM I++ I ++ F + L +++ + Sbjct: 428 MDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAIFMVIYYQL-FGFFSALALSVNVLLLV 486 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + + L +AA+ +G +++ V++ +R+R+ ++ S + I + Sbjct: 487 ALLSTLQVTLTLPGIAAIALALGMAIDSNVLINERIREELRA---GNSPQAAIAAGFDRA 543 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + ++G I FA+ GI+ + S++F + ++ Y + Sbjct: 544 WATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILTSMFSAVFFSRGVVNLWYGRKK 603 Query: 829 KNARI 833 + + + Sbjct: 604 RLSSL 608 Score = 39.7 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 15/34 (44%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF 35 R + W L + G++ +PNF +S + Sbjct: 3 RYSLWKYALIVLALLFGVIYTVPNFFGESPAVQI 36 >gi|134093586|ref|YP_001098661.1| putative preprotein translocase subunit SecD [Herminiimonas arsenicoxydans] gi|133737489|emb|CAL60532.1| Putative protein-export membrane protein SecD [Herminiimonas arsenicoxydans] Length = 619 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 166/511 (32%), Positives = 273/511 (53%), Gaps = 19/511 (3%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 + N LP + + ++ + LGLDLRGG H +++VD +N + R+ Sbjct: 108 YLVAFNLLPNTP--AWLQSLHAAPMYLGLDLRGGVHFLMQVDTKAVMNKRVLGLQASARA 165 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+ + + + + + I + F D+ + + L+ + + Sbjct: 166 ILRDKNVRHAGIARNGDNIEILFRDAETRSKARTALGDELRELLL--------TDAGSGD 217 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 E ++ L + Q + A++Q++ + +R++++G++E IQR G+ RI++QLPG QD Sbjct: 218 ELKLVGALQPAALKQTVEDAVQQNITTLSKRVNELGVAEPLIQRQGADRIVVQLPGVQDV 277 Query: 200 SRLRQLLGTTAKMSFHKVLPN-----NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254 SR + ++G TA + V FG + ++ I+G ++ Sbjct: 278 SRAKDIIGKTATLEVRLVDETVTRGTEDTATIPFGSELFKVGKNAPVVLYKDPIITGEYI 337 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV---LTAPVINQA 311 + A+A+FD +P V I + G RR E TR +GK +A+VL + + + Sbjct: 338 SSASASFDQNQ-QPSVSIDLNGDGGRRMREATRTRVGKAMAIVLFEKNKGEVLTVATIRD 396 Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371 + QI+G + E A LA +LRAGSL + I+EER +G LG+++I KG A + G Sbjct: 397 ELGARFQITGMGSSEAASDLALLLRAGSLAAPMEIIEERTIGPQLGAENIKKGFDATLYG 456 Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431 + I +FMI+ Y +G + F++ +NV+L +ALLS+L ATLTLP IA I L +G+A+D+N Sbjct: 457 FIGIAIFMIIYYRAFGFFSVFALAVNVMLLIALLSMLQATLTLPGIAAIALTLGMAIDAN 516 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +L+NERIREE R S ++ MGF RA++TI DSN+T LIA + L FG GAVRGFA+ Sbjct: 517 VLINERIREELRAGHSPQTAIAMGFERAWATILDSNVTTLIAGLALLIFGSGAVRGFAVV 576 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 L IL S+F+A+ + R ++ KK + Sbjct: 577 HCLGILTSIFSAVFVSRGVVNLWYGRKKKLT 607 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 83/181 (45%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP++ E I+KG + I + I++ I ++ F ++ L +++ + Sbjct: 429 MEIIEERTIGPQLGAENIKKGFDATLYGFIGIAIFMIIYYR-AFGFFSVFALAVNVMLLI 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ S + I Sbjct: 488 ALLSMLQATLTLPGIAAIALTLGMAIDANVLINERIREELRA---GHSPQTAIAMGFERA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + ++G + FA+ GI+ + S++F++ ++ Y + Sbjct: 545 WATILDSNVTTLIAGLALLIFGSGAVRGFAVVHCLGILTSIFSAVFVSRGVVNLWYGRKK 604 Query: 829 K 829 K Sbjct: 605 K 605 Score = 42.0 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 34/121 (28%), Gaps = 23/121 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I + +G L +PNF +S + Sbjct: 3 RYPLWKYITIVIALLLGALYTIPNFFGESPA---------------------VQISSAKA 41 Query: 62 EDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + L ++ L+ +G+ ++ + + F ++ + + L Sbjct: 42 TVKVDSSLMTQVEQVLQKAGLQSDGMVYETIGTQG-TVRVRFPNTDVQFKAKGLLEANLN 100 Query: 121 G 121 Sbjct: 101 L 101 >gi|317404685|gb|EFV85077.1| protein-export membrane protein [Achromobacter xylosoxidans C54] Length = 311 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 155/302 (51%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ + T G + I+F GG + V + Sbjct: 1 MEFFRIHRTIPFMRHALVLNIISLVTFVAAVFFILTRGFHLSIEFTGGTVMEVNYAQTAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR + L D QNF + ++RL Q G + A E V + Sbjct: 61 LENVRGVVSKLGYTDFQVQNFGTSHDVMIRLPLQEGQTSATQS--ETVMAALKAADQGVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL+ G++ +++ I +++Y+ RF+W FA+ + + D+ LGF Sbjct: 119 LRRVEFVGPQVGQELLHNGLMALLVVVIGIMVYLGFRFEWKFAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +A VL ++GYSVN+ VV+ DR+R+N + Y +++I+ +I +T+ Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKYRK-ADVQEVINSAITQTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI SS+F+AA + +++ R Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPTLHYFAMALTIGIWFGIYSSVFVAAALAMWMGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 Score = 45.5 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 93/196 (47%), Gaps = 5/196 (2%) Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GK 385 M + + + VG +G + ++ G A++ ++ I++++ + K Sbjct: 100 ATQSETVMAALKAADQGVELRRVEFVGPQVGQELLHNGLMALLVVVIGIMVYLGFRFEWK 159 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 + + + +V++ L + +L +AG++ +G +V+ ++++ +RIRE RK Sbjct: 160 FAVAGVIANLHDVVIILGFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKY 219 Query: 446 Q--SVFCSLDMGFSRAYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 + V ++ ++ S TI T ++ +LFF GG + FA+ + + I +++ Sbjct: 220 RKADVQEVINSAITQTISRTIITHGSTQMMVLAMLFF-GGPTLHYFAMALTIGIWFGIYS 278 Query: 503 AISIVRAMMIFIIRYK 518 ++ + A+ +++ + Sbjct: 279 SVFVAAALAMWMGVKR 294 >gi|288934132|ref|YP_003438191.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Klebsiella variicola At-22] gi|288888861|gb|ADC57179.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Klebsiella variicola At-22] Length = 1037 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 80/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQLTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W + +L L ++ +G V Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ + ++ + + E F G+ R+ +K Sbjct: 576 QLPSGATQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ ++ Sbjct: 636 RDPETGSSFAIIERATKAFNQINEARVIA 664 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A + ++++ P Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 70.9 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + + G + ++G + + PG S + Sbjct: 789 VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ + + + W + + L Sbjct: 849 LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L + G+E ++ +LT+IG S + +++ + + L Sbjct: 906 GVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 + + L + TS+A VLPMA G + + G++ A +IF Sbjct: 963 SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022 Query: 820 LLFIYDWRAKNAR 832 + + R Sbjct: 1023 FVLVRRRFPLKER 1035 >gi|161504407|ref|YP_001571519.1| preprotein translocase subunit SecD [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865754|gb|ABX22377.1| hypothetical protein SARI_02518 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 604 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 167/524 (31%), Positives = 291/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + D LRS L++EGI Sbjct: 93 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREEGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F DS+ ++ L + ++ + + Sbjct: 153 PYTTVRKEDNYGLSITFRDSKARDEAIT-----------YLTPRHRDLVISSQGGNALRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 604 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + L+ ++ +G +L Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + I++ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 598 >gi|289626170|ref|ZP_06459124.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649077|ref|ZP_06480420.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. aesculi str. 2250] Length = 303 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 96/286 (33%), Positives = 162/286 (56%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R I++LF+ ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAITMLFTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S + Q+F + LVR+ + Q + + ++ E V Sbjct: 63 LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIVSLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++++ + V+GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIVALWVFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|317484496|ref|ZP_07943406.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila wadsworthia 3_1_6] gi|316924272|gb|EFV45448.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila wadsworthia 3_1_6] Length = 1054 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 68/682 (9%), Positives = 181/682 (26%), Gaps = 37/682 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 +R + ++ +I +G + ++++P P + + Sbjct: 21 LRRPIFSTVISLIITLVGAIAI-----SVLPVEQYPDLTPP---------QVEVNATYTG 66 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119 + + + + + + + +T+SF + V + Sbjct: 67 ASANVIAETVASLLESQINGVDNMIYMNSVSSGTGSMSLTVSFNVGTDPDQATIDVNNRV 126 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 Q ++L + ++ + + + + + I S + +D++ Sbjct: 127 QLALAQLPQEVQRMGVSVLKKSSSMLQIIFLTSPDQRYNTIYLSNYALLNIVDELKRLPG 186 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 + P + QL T ++ N G + G Sbjct: 187 VGDAKNFAAQDYSMRVWLKPDVMSQLGVTPEDIATALRDQNAQFAAGRMGAEPMSPGVGV 246 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 + + + ++ + I + I Sbjct: 247 TWQITTQGRLT-------------TPEQFGDVILRTQPDGSILRLKDVATIELGAQSYDF 293 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + T E L + S Sbjct: 294 VGKYNGLDAVPIGIYLSPGANALATAEVVKAKMEELSKEFPVGVAYSIPYDTTTFVKISI 353 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 T LV +V+++ + + L+ ++ ++++ T A + LG ++ ++ G Sbjct: 354 EEVVKTLFEAMVLVFLVVYLFLQNWRATLIPCLAVPVSIVGTFAGMYALGFSINTLTMFG 413 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 +VL IG+ VD I+V E + + + + + + F Sbjct: 414 LVLAIGIVVDDAIVVLENVERHISDGLPPRKATAKAMQEVTGPVIAIVLVLCAVFIPVAF 473 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSR 530 GG + FAIT+ +S++IS A++ A+ +++ + + Sbjct: 474 TGGMAGRMYQQFAITIAVSVVISGAVALTFTPALCALLLKPGHGEPNVFFRKFNGWFEGL 533 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + + R+ ++ G + +G + + Sbjct: 534 TGKYVSIVKLLLRRSLLAVGLFVLVLVGIGGVFERVPGGLVPDEDQGYLIALMTMPDGAA 593 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 +S + +E L ++ +F +K P + Sbjct: 594 ISRTSAVVEKLDKAIMADPLVADVMSFSGMDAVSGAAKTNVATFFFTLKPWGERKAPGDS 653 Query: 651 IQNTEIVGPKISRELIRKGIVG 672 + + L + + Sbjct: 654 SFDLARKLYGMGFGLEQGSFIA 675 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 87/237 (36%), Gaps = 7/237 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + Q D + + + +++A V++ +++++ P+ Sbjct: 280 DVATIELGAQSYDFVGKYNGLDAVPIGIYLSPGANALATAEVVKAKMEELSKEFPVGVAY 339 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + + I + + + + + + + +++ + W L + + I T Sbjct: 340 SIPYDTTTFVKISIEEVVKTLFEAMVLVFLVVYLFLQNWRATLIPCLAVPVSIVGTFAGM 399 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 G N + ++ IG V+D +VV + + + + + R K++ E G Sbjct: 400 YALGFSINTLTMFGLVLAIGIVVDDAIVVLENV---ERHISDGLPPRKATAKAMQEVTGP 456 Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 + + +P+A GG FAI +A +V++ + ++ + + Sbjct: 457 VIAIVLVLCAVFIPVAFTGGMAGRMYQQFAITIAVSVVISGAVALTFTPALCALLLK 513 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 88/252 (34%), Gaps = 7/252 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 V D + + L +++ + P + + + +++ Sbjct: 797 EVYVRNKQDEMIPLTALINVKPTSGPQTVERFNNFQAAKFMGNPATGYSSGQAMTAMEEV 856 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700 E++P + + G + +++ + + + + +++ W L +T + Sbjct: 857 AKEVLPDGYTIAW-SGSSYQEKLVSSGGSLVFVLALVMVFLILAAQYESWSLPLTVLTAV 915 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + + L GI ++ A++TLIG S + +++ + + + Sbjct: 916 PFGVLGAITAIWLRGISNDVYFQVALVTLIGLSAKNAILIVEFAVEQYR--NEGKDAVHA 973 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817 +++ V TS+A + +P+AV G + + + G++VA + Sbjct: 974 AEEAARLRFRPIVMTSLAFILGCVPLAVSTGAGAASRHAIGTSVIGGMLVATLVAPLFVP 1033 Query: 818 PILLFIYDWRAK 829 +I K Sbjct: 1034 FFFRWIMRASEK 1045 >gi|307543988|ref|YP_003896467.1| preprotein translocase subunit SecF [Halomonas elongata DSM 2581] gi|307216012|emb|CBV41282.1| preprotein translocase subunit SecF [Halomonas elongata DSM 2581] Length = 308 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 156/291 (53%), Gaps = 6/291 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 FM R + S+ + S+ + GLN G+DF GG + V LS+VR Sbjct: 6 NRQFDFMGKRRYAFIFSVATLLISLVAILVQGLNLGLDFTGGTLVEVRYATAPALSMVRE 65 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 LE+ D++ Q F L+RLQ V V + + + E Sbjct: 66 TLEAAGFKDVAVQTFGASTEVLIRLQ-----QAFDADVGNQVVDLLRQGGNNVDLVRAEF 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG ++ +L + +G++++ +++Y+ RF++ FALGA+ L D+ LG FALFG Sbjct: 121 VGAQVGDQLRDQSGMGMLVALGVVVLYVAFRFQYKFALGALLALGHDVLIVLGIFALFGF 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 EF+LT +AAVL +IGYS+ND +VVYDR+R+N++ + + +++IN+TL R++ TS Sbjct: 181 EFDLTVLAAVLAVIGYSLNDTIVVYDRIRENIRK-SRIDDMPAIFNEAINQTLSRTLATS 239 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + VL + + GG +I FA+ + GI V SSI+++A +LL + R Sbjct: 240 GTTLLVVLALMILGGDMIHYFAVALFIGIAVGTFSSIYVSAALLLPLKLQR 290 >gi|153824594|ref|ZP_01977261.1| protein-export membrane protein SecD [Vibrio cholerae MZO-2] gi|149741812|gb|EDM55841.1| protein-export membrane protein SecD [Vibrio cholerae MZO-2] Length = 617 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 152/523 (29%), Positives = 277/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 104 NLAPSTPNWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D T + Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 INQATIQSALGRNFRITGIDSPSEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPSEAHNLALLLRAGA 430 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 606 Query: 824 YDWRAKNA 831 Y + N Sbjct: 607 YGGKRINK 614 Score = 39.3 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + I L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVMLTIAIAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + + L K + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTTALDKAHLSKKSIALENGSILVRFNDTDTQISARDIISEAL 95 >gi|42523691|ref|NP_969071.1| protein-export membrane protein SecF [Bdellovibrio bacteriovorus HD100] gi|39575898|emb|CAE80064.1| protein-export membrane protein SecF [Bdellovibrio bacteriovorus HD100] Length = 312 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 164/303 (54%), Gaps = 8/303 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 F+ ++ G+S++ + S+ L HG++YGIDFKGG ++ V ++ V + VR Sbjct: 9 FGRFDFVGKAWFFGGVSLVLVVASLIYLAVHGISYGIDFKGGTEIQVKFDQGVTIDQVRD 68 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK-------KKITEIVPLS 649 ++ L +G++ Q+F F++R Q + G + +T + + Sbjct: 69 SVAGLDLGEVGVQSFGEGNEFIIRFQGREGKTDKETNEILNADLGKVRGIIAEKFVASNP 128 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I+ + VGP++ EL R G++ V + +LIY+ +RF + FA GA+ L D TL Sbjct: 129 DIRRIDTVGPQVGAELKRNGLLAVFYCLLVILIYVALRFDYKFAPGAVLCLFHDAVITLA 188 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F L G E N++ +AA++TLIG+S+ND +VV+DR+R+ + F+ +I+KSINE L Sbjct: 189 VFVLVGKEVNVSILAAIMTLIGFSLNDTIVVFDRIRE-VDTGNHDKGFKFVINKSINEML 247 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ TS F+S L + ++ + A + GI SSI++AAP +L + + K Sbjct: 248 VRTLITSGTTFVSALCLYIFADGTVEDIAFSICVGIFFGTYSSIYVAAPFVLLMDKLQFK 307 Query: 830 NAR 832 A+ Sbjct: 308 KAK 310 >gi|113461456|ref|YP_719525.1| preprotein translocase subunit SecD [Haemophilus somnus 129PT] gi|112823499|gb|ABI25588.1| protein-export membrane protein [Haemophilus somnus 129PT] Length = 616 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 159/524 (30%), Positives = 285/524 (54%), Gaps = 39/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + GLDLRGG ++EVD ++ + D LR+ L+KE Sbjct: 104 NLAPATPKWLTNIGGRPMKWGLDLRGGVRFLMEVDMHTALDKRQEQLQDSLRTELRKEKY 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+R +N ++ A ++ + Q +N + +E +S+ Sbjct: 164 QYTSIRNGENFTTLITLAKPEQLSDVQRFLRKQHQNLN-----------VNAISENTLSL 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS+N + ++ HAIEQ++ I+R+R++++G++E IQR G+ RI+++LPG QD +R +++ Sbjct: 213 ELSENALREIRDHAIEQNLSILRRRVEELGVAEPVIQRQGAERIVVELPGVQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + + G+ D +G+ ++ + + G H+ A++ Sbjct: 273 LGATATLEFRLVNQNANLDVALRGMVPSDSEVKYDRNGSPIVLYRRAVLGGEHITNASSG 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D T P V ++ D G + T+ N+ KP+A + + Sbjct: 333 IDQNTGSPQVSVTLDSEGGEIMSQTTKLNLKKPMATLYVEYKDSGKKDEHGKTILAKHEE 392 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q + QI+G + A LA +LR+G+L + I+EER VG LG+ ++ Sbjct: 393 VINVATIQGRFGSQFQITGINSPAEAQNLAVLLRSGALTAPIQIIEERTVGPSLGAQNVE 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GL + ++F++ Y +GL A ++ N++L + ++SLL ATLT+P IAGIV Sbjct: 453 QGLKAGLWGLAITIIFILFYYKLFGLFASIALIANMVLLVGIMSLLPGATLTMPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G++VD+N+L+ ERI+EE +++ +++ G+S A+++IFD+N+T ++ +VVL+ G Sbjct: 513 LSVGMSVDANVLIFERIKEEINNGRTIQQAINEGYSGAFTSIFDANLTTILTSVVLYAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L + ISMFTAI+ R ++ I K+++ + I Sbjct: 573 TGPVKGFAITLSLGVAISMFTAITGTRFLVNLIYGGKRVEKLSI 616 Score = 142 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 78/172 (45%), Gaps = 5/172 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716 GP + + + +G+ + +I+I +K F L A LI ++ +G +L G Sbjct: 443 GPSLGAQNVEQGLKAGLWGLAITIIFILFYYKL-FGLFASIALIANMVLLVGIMSLLPGA 501 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 + +A ++ +G SV+ V++++R+++ + + + I++ + + Sbjct: 502 TLTMPGIAGIVLSVGMSVDANVLIFERIKEEI---NNGRTIQQAINEGYSGAFTSIFDAN 558 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + + G + FAI ++ G+ ++ ++I ++ IY + Sbjct: 559 LTTILTSVVLYAVGTGPVKGFAITLSLGVAISMFTAITGTRFLVNLIYGGKR 610 Score = 40.8 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 30/133 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ IG+L +LPN + + G+ Sbjct: 4 RYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQI----------------SGTR----GQ 43 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF----KENIADKVTL 117 D +++ L++ + + S+ I F ++ K+ I +++ Sbjct: 44 TADI------NVLTNVQTLLEQNNLPIKSIILENGSILARFNNTDDQLLAKDKIIEQLGN 97 Query: 118 FLQGVNSKLNVDP 130 + P Sbjct: 98 NYSVALNLAPATP 110 >gi|253687416|ref|YP_003016606.1| protein-export membrane protein SecD [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753994|gb|ACT12070.1| protein-export membrane protein SecD [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 604 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 167/538 (31%), Positives = 289/538 (53%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A PN+L + + LGLDLRGG H ++EVD D + + Sbjct: 88 FVVALNLAPATPNWLRLLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 138 Query: 73 YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+++ I S+R+I N + + F D++ +++ + +T + + Sbjct: 139 TMDSLRSDLREKNIPYASVRKIDNYGVEIRFRDAQTRDDGINYLTSRHRNL--------- 189 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 +L ++ + V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI++ Sbjct: 190 --VLSSSGSNLLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 247 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V N G DG+ ++ + Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNSNADATAAANGRVPGDSEVKNMRDGSPVVLFKR 307 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T++ D +P V+IS D G T+D+IGK +A + + Sbjct: 308 VILTGDHITDSTSSNDEYN-RPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGK 366 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 Q+ +I+G A L+ +LRAG+L + IVE Sbjct: 367 KDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 426 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A + GL+ +LFM+ Y K+G++A ++ N++L + ++SLL Sbjct: 427 ERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIVGVMSLL 486 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE +SV ++ G+ A+S+I D+N Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIHEGYKGAFSSIVDAN 546 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T LI ++L+ G G+++GFAIT + I SMFTAI RA++ + K++ + I Sbjct: 547 VTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 137 bits (345), Expect = 7e-30, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + S+ N ++ L G + + Sbjct: 358 FVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ +K F + A + L+ ++ Sbjct: 418 LIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK-KFGVIATSALVANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ + + S + I + Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIHE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 V ++ I V+ + G I FAI A GI + ++I I+ + Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLL 593 Query: 824 YDWRAKNA 831 Y + N Sbjct: 594 YGGKRINK 601 >gi|115350663|ref|YP_772502.1| preprotein translocase subunit SecF [Burkholderia ambifaria AMMD] gi|115280651|gb|ABI86168.1| protein translocase subunit secF [Burkholderia ambifaria AMMD] Length = 316 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF +N L+RLQ + G + AQ + V + P + Sbjct: 61 LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMTALKAQSPDVS 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ IRF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA+L ++GYSVN+ VV++DR+R+ + +S ++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERRMSVSEVINHAITTTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|313901699|ref|ZP_07835130.1| protein-export membrane protein SecF [Thermaerobacter subterraneus DSM 13965] gi|313468050|gb|EFR63533.1| protein-export membrane protein SecF [Thermaerobacter subterraneus DSM 13965] Length = 295 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 153/287 (53%), Gaps = 7/287 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 F+R R +S+L + GLNY ++F GG + RPV+ VRS Sbjct: 1 MKGFSFVRTRGVAFALSLLLLAAGMIAWAVRGLNYNVEFTGGAAWTLRFERPVEAGPVRS 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 LE + D Q +G K LVR + + V + + V ++ + Sbjct: 61 VLEEQGLDDAIVQLAEGGKVALVRTPHVD------QATQQKVLEALGTQVAPVQLEQFDS 114 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 + P I RE+ KG++ + ++ + M++Y+ +RF+++FA+ AI ++ D+ +G FAL Sbjct: 115 ISPVIGREIKEKGLLALGLATVGMIVYMTVRFEFWFAVAAILAMLHDVFMVVGLFALLQW 174 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 + + + +AAVLT+ GYS+ND VVV+DR+R+N++L +L+D+SI + L RS+ T Sbjct: 175 QVDSSFIAAVLTVFGYSINDTVVVFDRIRENLRL-RRKEPLEELVDRSIRQVLRRSLLTG 233 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 +++ + +GG I +FA M FGI+ SSIF+A+P+ + Sbjct: 234 TTTLMALAAVFAFGGETIRAFAGAMFFGILFGTYSSIFVASPLWYVL 280 >gi|290508336|ref|ZP_06547707.1| multidrug efflux protein [Klebsiella sp. 1_1_55] gi|289777730|gb|EFD85727.1| multidrug efflux protein [Klebsiella sp. 1_1_55] Length = 1037 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 80/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQLTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W + +L L ++ +G V Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ + ++ + + E F G+ R+ +K Sbjct: 576 QLPSGATQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ ++ Sbjct: 636 RDPETGSSFAIIERATKAFNQINEARVIA 664 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A + ++++ P Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 70.9 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + + G + ++G + + PG S + Sbjct: 789 VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ + + + W + + L Sbjct: 849 LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L + G+E ++ +LT+IG S + +++ + + L Sbjct: 906 GVIGALLATWVRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 + + L + TS+A VLPMA G + + G++ A +IF Sbjct: 963 SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022 Query: 820 LLFIYDWRAKNAR 832 + + R Sbjct: 1023 FVLVRRRFPLKER 1035 >gi|206580218|ref|YP_002237193.1| acriflavine resistance protein D [Klebsiella pneumoniae 342] gi|206569276|gb|ACI11052.1| acriflavine resistance protein D [Klebsiella pneumoniae 342] Length = 1037 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 80/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQLTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W + +L L ++ +G V Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ + ++ + + E F G+ R+ +K Sbjct: 576 QLPSGATQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ ++ Sbjct: 636 RDPETGSSFAIIERATKAFNQINEARVIA 664 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A + ++++ P Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + + G + ++G + + PG S + Sbjct: 789 VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ + + + W + + L Sbjct: 849 LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L + G+E ++ +LT+IG S + +++ + + L Sbjct: 906 GVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 + + L + TS+A VLPMA G + + G++ A +IF Sbjct: 963 SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022 Query: 820 LLFIYDWRAKNAR 832 + + R Sbjct: 1023 FVLVRRRFPLKER 1035 >gi|300715565|ref|YP_003740368.1| protein translocase subunit SecA [Erwinia billingiae Eb661] gi|299061401|emb|CAX58511.1| similar to protein translocase subunit SecA [Erwinia billingiae Eb661] Length = 322 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 94/301 (31%), Positives = 163/301 (54%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR IS L I S ++ G N+G+DF GG + + + Sbjct: 5 YTVEQLNYGRKVHDFMRWDKVAFTISALLLIASFAIMGLKGFNWGLDFTGGTVIEITLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P D+ +R LE D QNF ++ LVR+ G+ Q ++V Sbjct: 65 PADIDSLRGALEKSGFVDPQVQNFGSSRDVLVRMSPNEGN-AGQELGNKVVSIINQASEQ 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++++ IA+LIY+ RF+W ALGA+ L D+ T Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGGMALLVALIAILIYVGFRFEWRLALGAVLALAHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT VA+++++IGYS+ND +VV DR+R+N + + D+++ S+ + Sbjct: 184 MGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-DIVNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGALLEGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|52842217|ref|YP_096016.1| preprotein translocase subunit SecF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54297926|ref|YP_124295.1| preprotein translocase subunit SecF [Legionella pneumophila str. Paris] gi|148359571|ref|YP_001250778.1| protein export protein SecF [Legionella pneumophila str. Corby] gi|296107613|ref|YP_003619314.1| protein export protein SecF [Legionella pneumophila 2300/99 Alcoy] gi|52629328|gb|AAU28069.1| protein export protein SecF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751711|emb|CAH13133.1| hypothetical protein lpp1981 [Legionella pneumophila str. Paris] gi|148281344|gb|ABQ55432.1| protein export protein SecF [Legionella pneumophila str. Corby] gi|295649515|gb|ADG25362.1| protein export protein SecF [Legionella pneumophila 2300/99 Alcoy] gi|307610724|emb|CBX00331.1| hypothetical protein LPW_20571 [Legionella pneumophila 130b] Length = 305 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 165/294 (56%), Gaps = 7/294 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM AR W SIL + SI L +GL +G+DF GG Q+ + ++ D Sbjct: 1 MEFFNPNSKIDFMGARRWTALFSILIFVVSIGALMINGLKWGLDFTGGTQIEISYSKAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L ++R NL + ++ K+ L+ + + + M+ ++ E++P + Sbjct: 61 LPLIRENLNKAGFKEAQVVSYGTSKDVLISIAPR------ADKQQSMLVDQVMEVLPGAV 114 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 Q + VGP++ +EL KG + +I+S +A +IYI +RF++ A+ + LI D LG Sbjct: 115 KQRVDFVGPQVGQELATKGALAIIVSLLATMIYIAMRFEYKLAVSSAVALIHDPVLILGV 174 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FALFGIEF+L A+A +L +IGYS+ND +VV+DR+R+N S D+++ SIN+TL Sbjct: 175 FALFGIEFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKI-RRTSPIDIMNISINQTLS 233 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R++ TS+ V+ + V+GG I F++ + GIV+ SSI++A + + + Sbjct: 234 RTIMTSVLTLFVVVALFVYGGEAIYGFSLALIIGIVIGTYSSIYVAGALAVAMG 287 >gi|51473765|ref|YP_067522.1| preprotein translocase subunit SecD [Rickettsia typhi str. Wilmington] gi|81390023|sp|Q68WF2|SECD_RICTY RecName: Full=Protein-export membrane protein secD gi|51460077|gb|AAU04040.1| protein-export membrane protein SecD [Rickettsia typhi str. Wilmington] Length = 518 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 198/533 (37%), Positives = 321/533 (60%), Gaps = 28/533 (5%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+N W ++L + ++ ALPNF+ + +P + ++LGLDLRGG++L+L+ Sbjct: 1 MQNLPKWKIVLSIICTVFAIICALPNFIQIN-----WKFLPHDSVNLGLDLRGGANLLLD 55 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 VD D ++N ++ +D LR ++ IG ++ N I L + +++ + Sbjct: 56 VDFDTYLNDSMENIADTLRKNFREHKIGYKNLLVRHNNIQLEVRSTEVLKSLKKIIHK-- 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 +++ + +I + S++ ++ +++ +EQS+EI+R RID G E Sbjct: 114 ----------IDPEIIIEVNKNKIKLRYSESRLNDLLNKVVEQSIEIVRMRIDSTGTKEP 163 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 +QR G+ IL+Q+PG +PS L+ +LG TAK++FH V N + + + G L Sbjct: 164 ILQRQGNKHILLQVPGVDNPSYLKNILGKTAKLTFHLVDENANIEEAIKGHIPLDSMLIK 223 Query: 240 ---------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +++ KV +SG HL A+A+FD + +P+V SF+ +G++ F E+T++N Sbjct: 224 GDSEHHGEYYIVIKKKVLLSGTHLTKASASFDQNS-QPMVAFSFNNLGSKIFTEITKNNT 282 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 GK LA+VLD ++L+AP+IN AI G I+GNFTIE+A LA +LR GSLP L I+EER Sbjct: 283 GKRLAIVLDNKLLSAPMINGAIIGGDGIITGNFTIESANELALLLRVGSLPTPLKIIEER 342 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 ++G +LG+DSI G A + G + +FMI+ YG GL A+ ++ L ++ LALLSL A Sbjct: 343 SIGPNLGADSIESGKKAGLIGFTAVCIFMILSYGVIGLFANIALILALLYILALLSLFQA 402 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI DSN+T Sbjct: 403 TLTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATIIDSNLTT 462 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 LI L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K + + Sbjct: 463 LIVAFALYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFKPEKL 515 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I A+ I++ + + L A LIL + L +LF Sbjct: 343 SIGPNLGADSIESGKKAGLIGFTAVCIFMILSYGVI-GLFANIALILALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + +S I + + Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATIIDS 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S+I I +L+ I+ K ++ Sbjct: 459 NLTTLIVAFALYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVKYFKPEKL 515 >gi|83719393|ref|YP_441822.1| preprotein translocase subunit SecF [Burkholderia thailandensis E264] gi|167580647|ref|ZP_02373521.1| preprotein translocase subunit SecF [Burkholderia thailandensis TXDOH] gi|167618751|ref|ZP_02387382.1| preprotein translocase subunit SecF [Burkholderia thailandensis Bt4] gi|257137991|ref|ZP_05586253.1| preprotein translocase subunit SecF [Burkholderia thailandensis E264] gi|83653218|gb|ABC37281.1| protein-export membrane protein SecF [Burkholderia thailandensis E264] Length = 316 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 158/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR +S++ + ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQTAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L +L D QNF +N L+RL + G + AQ + V + Sbjct: 61 LEPVRATLGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMAALKAQNADVA 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ +++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|157961299|ref|YP_001501333.1| preprotein translocase subunit SecF [Shewanella pealeana ATCC 700345] gi|157846299|gb|ABV86798.1| protein-export membrane protein SecF [Shewanella pealeana ATCC 700345] Length = 315 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 168/299 (56%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 ++ + F+R +S + + SI L T G+N+G+DF GG + + ++P Sbjct: 1 MLQVLNVKGTVNFLRHALPISILSAVLVLGSIVTLATKGINWGLDFTGGTVVELEFSKPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL+ +R+NL S + QNF ++ L+RL + + V +T++ Sbjct: 61 DLNAIRTNLSSESVAGALVQNFGSSRDVLIRLPVKDDFKSEDQ--VNDVMAAVTQLDSAV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E VGP++ +EL +G + V+++ I +LIY+ RF+W ALG++ L D+ TLG Sbjct: 119 IQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLALGSVAALAHDVIVTLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L +EF+LT +A +LT++GYS+ND +VV+DR+R+N S+ ++++ SI +T+ Sbjct: 179 VFSLLQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKLRKSLP-EEVVNISITQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T+ + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296 >gi|284006394|emb|CBA71630.1| protein-export membrane protein [Arsenophonus nasoniae] Length = 615 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 162/536 (30%), Positives = 275/536 (51%), Gaps = 44/536 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L A P++L + + LGLDLRGG H ++EVD + ++ + Sbjct: 100 IVALNLAPATPHWLRALGGE---------PMKLGLDLRGGVHFLMEVDIETALSKLQEQN 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LRS L+++GI ++R+I N + + F D + +T + Sbjct: 151 MDGLRSDLREKGIPYSTIRKIDNYGVEIRFRDDNDRSQAESYLTPRYR-----------D 199 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + T ++ V++ I + ++A+ Q++ IIR R++Q+G++E +QR G+ RI+++ Sbjct: 200 LVFTTGNNNILTAVMTDERIREARNYAVSQNINIIRNRVNQLGVAEPLVQRQGASRIVVE 259 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V G DG ++ +V Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNVGIDSSAIQRGHIPGDSEIKYTRDGEPVVLYKRV 319 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG---------------- 291 ++G H+ +T++ D V G+ + Sbjct: 320 ILTGDHITDSTSDLDEMGSPQVSIGLDSVGGSIMSDFTRDNQDKLMATLFVEYKDSGRKD 379 Query: 292 -KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 A+++ + A K +I+G A L+ +LRAG+L + IVEER Sbjct: 380 ANGRAILVKDEKVINVARISARFGSKFRITGISNPTEARQLSLLLRAGALIAPIQIVEER 439 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG- 409 +G LG +I +G A +AGL+ VLFMI+ Y K+GL+A ++ N+IL + ++SLL Sbjct: 440 TIGPTLGLQNIEQGMKASLAGLLASVLFMIIYYRKFGLIASSALLANLILIMGIMSLLPG 499 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 ATLT+P IAGIVL + +AVD+N+L+NERI+EE + +S+ ++ G+ A+S+I D+N+T Sbjct: 500 ATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSIQQAIHEGYKGAFSSILDANLT 559 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +I +L+ G G+++GFAIT + I SMFTAI RA++ + K++K + I Sbjct: 560 TVITATILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRIKKLSI 615 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + +A ++++ I ++ F L A + L+ ++ +G +L Sbjct: 440 TIGPTLGLQNIEQGMKASLAGLLASVLFMIIYYR-KFGLIASSALLANLILIMGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ +K S + I + + Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSIQQAIHEGYKGAFSSILD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + G I FAI A GI + ++I I+ +Y + Sbjct: 556 ANLTTVITATILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRIKK 612 >gi|161615408|ref|YP_001589373.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194445387|ref|YP_002039649.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195873873|ref|ZP_02699376.2| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197247540|ref|YP_002145390.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263808|ref|ZP_03163882.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390374|ref|ZP_03216985.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205357167|ref|ZP_02345538.2| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205360387|ref|ZP_02683136.2| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|161364772|gb|ABX68540.1| hypothetical protein SPAB_03179 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404050|gb|ACF64272.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195631667|gb|EDX50187.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211243|gb|ACH48640.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242063|gb|EDY24683.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199602819|gb|EDZ01365.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323397|gb|EDZ11236.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205349838|gb|EDZ36469.1| protein-export membrane protein SecD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 615 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 293/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F DS+ ++ + L + ++ + ++ Sbjct: 164 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQGGNQLRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 615 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + L+ ++ +G +L Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + I++ Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 609 >gi|66044479|ref|YP_234320.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. syringae B728a] gi|71736135|ref|YP_273561.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. phaseolicola 1448A] gi|63255186|gb|AAY36282.1| SecD/SecF/SecDF export membrane protein:SecF protein [Pseudomonas syringae pv. syringae B728a] gi|71556688|gb|AAZ35899.1| protein-export membrane protein SecF [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322938|gb|EFW79028.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. glycinea str. B076] gi|320329939|gb|EFW85927.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. glycinea str. race 4] gi|330892557|gb|EGH25218.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. mori str. 301020] gi|330984997|gb|EGH83100.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. lachrymans str. M301315] Length = 303 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 160/286 (55%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S + Q+F + LVR+ + Q + + ++ E V Sbjct: 63 LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIVALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|307261549|ref|ZP_07543217.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868672|gb|EFN00481.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 604 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 278/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 93 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + + + EIS Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIRR-----------VHTALETASISPTEISF 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S++ + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 202 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTVLTSLVLYAVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 83/178 (46%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A L ++ T+G +L G Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAAAALTANMVLTIGLMSLIG 487 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 545 NLTTVLTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602 >gi|438854|gb|AAA74437.1| envD homologue; ORFB [Pseudomonas aeruginosa] Length = 1046 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 72/686 (10%), Positives = 183/686 (26%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L ++++P+ P + Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + + + T++F + +V LQ Sbjct: 54 AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTTTVTFEQGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + S I+ D + ++ Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 DP++L T +S N G Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++G Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + A L + S Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 LS +A + + ++ + + +G + V Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++S++ + ++ F V G + M+K Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 +++ + Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665 Score = 79.3 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q I+ Q + + +++ + + + + Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S R+ KS+ Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M LPMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + + G + ++G + + PG S K Sbjct: 790 VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + + L Sbjct: 850 LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L ++ G+ ++ +LT IG S + +++ + ++ L+ + Sbjct: 907 GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814 ++ L V TS+A + V+P+A+ G + + G+V A +IF Sbjct: 964 EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018 >gi|160902576|ref|YP_001568157.1| protein-export membrane protein SecF [Petrotoga mobilis SJ95] gi|160360220|gb|ABX31834.1| protein-export membrane protein SecF [Petrotoga mobilis SJ95] Length = 302 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 7/302 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I F+ R + + +SI + S+ ++F G N G+DF GG ++ V ++ + +R+ Sbjct: 1 MPNIDFVGKRSFFIYLSIALILFSVIVIFVKGFNLGVDFSGGSEIIVSFDKSYTIDELRN 60 Query: 597 NLESLQIGDISFQNF------DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+++ + + F + + + + + + + + Sbjct: 61 GLQTINQEYATAKIIQTNPGGGASDQFFYIITVRDSFPTLEEKQMFINSLEESFSDSSLN 120 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I+ V +RE+ VIIS I +L YI IRF++ + +GAI L D+ TLGF Sbjct: 121 IEQFNDVSGYAAREIRSYAWYAVIISLIVLLAYITIRFQFSYGVGAILALAHDVIITLGF 180 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 ++LFGIE NLTA+AA LTL GYS+ND +VVYDR+R+N + + + +KSINE + Sbjct: 181 YSLFGIEMNLTAIAAFLTLAGYSLNDTIVVYDRIREN-RSKNRGMDIESITNKSINEVIV 239 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 RS+ TS+ F+ V M + GG I SFA + G+++ SS++IA+PI++ + R K Sbjct: 240 RSLNTSLTTFLVVFMMFLLGGRSIASFAFGLTVGVIIGTYSSLYIASPIVIGMVKRRKKT 299 Query: 831 AR 832 + Sbjct: 300 QK 301 >gi|329298302|ref|ZP_08255638.1| preprotein translocase subunit SecF [Plautia stali symbiont] Length = 322 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 91/297 (30%), Positives = 160/297 (53%), Gaps = 2/297 (0%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L + FMR I L + SI ++ G N+G+DF GG + + +P DL Sbjct: 9 QLNHGRKVVDFMRWDTLAFIIFGLLIVASIAIIGVRGFNWGLDFTGGTVIEINLKKPADL 68 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 +R L + QNF ++ +VR+ G+ Q ++V +T+ Sbjct: 69 DALRDGLVKAGFEEPLVQNFGSSRDVMVRMPPTTGN-AGQVLGNKVVASINQTTQQNATV 127 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + E VGP + +L + G + ++ + IA+LIYI RF+W ALG + L D+ T G Sbjct: 128 KRIEFVGPSVGSDLAQAGAMALLSALIAILIYIGFRFEWRLALGTVLALAHDVIITCGIL 187 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +LF IE +LT VA+++++IGYS+NDK+VV DR+R+N + S+ D+ + S+ +TL R Sbjct: 188 SLFHIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQTLSR 246 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ TS+ +L + ++GG+++ F++ M G+ + SSI++++ + L + R Sbjct: 247 TLITSITTLAMILILFIFGGALLKGFSLTMLIGVTIGTISSIYVSSALALKLGMKRE 303 >gi|262165055|ref|ZP_06032792.1| protein-export membrane protein SecD [Vibrio mimicus VM223] gi|262172186|ref|ZP_06039864.1| protein-export membrane protein SecD [Vibrio mimicus MB-451] gi|261893262|gb|EEY39248.1| protein-export membrane protein SecD [Vibrio mimicus MB-451] gi|262024771|gb|EEY43439.1| protein-export membrane protein SecD [Vibrio mimicus VM223] Length = 606 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 152/523 (29%), Positives = 276/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 93 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEESFRSDLRDEKI 152 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D T + Sbjct: 153 RYRAIRPLSDAVEVTLRDAEQLSQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 204 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 205 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 264 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 265 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 323 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 324 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 383 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 INQATIQSALGRNFRITGIDSPSEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 443 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 444 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 503 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 563 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 564 GAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRINKLSI 606 Score = 144 bits (361), Expect = 8e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 360 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPSEAHNLALLLRAGA 419 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 478 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 535 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLM 595 Query: 824 YDWRAKNA 831 Y + N Sbjct: 596 YGGKRINK 603 >gi|152971334|ref|YP_001336443.1| aminoglycoside/multidrug efflux system [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956183|gb|ABR78213.1| aminoglycoside efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 1037 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 81/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIL-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQMTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W + +L L ++ +G V Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ + ++ + + E F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDPQTGTSFAIIERATKAFNQINEARVIA 664 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A + ++ + P Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + + G + ++G + + PG S + Sbjct: 789 VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ + + + W + + L Sbjct: 849 LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L + G+E ++ +LT+IG S + +++ + + L Sbjct: 906 GVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 + + L + TS+A VLPMA G + + G++ A +IF Sbjct: 963 SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022 Query: 820 LLFIYDWRAKNAR 832 + + R Sbjct: 1023 FVLVRRRFPLKER 1035 >gi|146308533|ref|YP_001188998.1| preprotein translocase subunit SecD [Pseudomonas mendocina ymp] gi|145576734|gb|ABP86266.1| protein-export membrane protein SecD [Pseudomonas mendocina ymp] Length = 622 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 162/526 (30%), Positives = 270/526 (51%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD D ++ ++Y E++S L+KE I Sbjct: 107 NLAQTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSLLRKERI 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 SM + +I L FADS E + D + + ++ + + Sbjct: 167 RYRSMPEQGGRIQLGFADSDTLEKAQRLIRKDYN--------DFELTTVERGGQQVLQLA 218 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q I ++ ++I Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 219 LTQAKIAEIREYSIRQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 278 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F + R+ +E ++ I+G + A A+FD Sbjct: 279 GKTANLEFRLQADLD-APRGATETFGFREEGRPPVQLERELIITGDQVTDAQASFDENG- 336 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+I D G TR+N+G+ +AV+ + + Sbjct: 337 RPQVNIRLDGHGGDLMNRATRNNVGRSMAVIFIEQKPVTRYVRQTVDGVEQEVAVSSFVE 396 Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ + +I+G + LA +LRAG L + EER +G LG++ Sbjct: 397 EKKIISLATIQSALGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAE 456 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG + ++ + LF+I +Y +G++A ++ N++L + L+S +GATLTLP IAG Sbjct: 457 NIAKGIESTEWAMIFVALFIIAIYRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAG 516 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE V ++ GF RAYS I DSN+T L+ +LF Sbjct: 517 IVLTLGMAVDANVLIFSRIREELANGLHVQRAIHEGFDRAYSAILDSNLTTLLVGGILFA 576 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I+ SMFTAI R ++ I + K + I Sbjct: 577 MGTGPVKGFAVTMSLGIITSMFTAIMFTRGLVNLIFGGRNFKKLWI 622 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 90/250 (36%), Gaps = 5/250 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 R V + S + + + ++ L G + + + Sbjct: 374 VTRYVRQTVDGVEQEVAVSSFVEEKKIISLATIQSALGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + E I KGI + I + ++I +++ F + A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGAENIAKGIESTEWAMIFVALFIIAIYRF-FGVLATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ +G + G L +A ++ +G +V+ V+++ R+R+ + + I Sbjct: 493 FNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLH---VQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820 + + + +++ + + G + FA+ M+ GI+ + ++I ++ Sbjct: 550 HEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIITSMFTAIMFTRGLVN 609 Query: 821 LFIYDWRAKN 830 L K Sbjct: 610 LIFGGRNFKK 619 >gi|238911458|ref|ZP_04655295.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 604 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 293/524 (55%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F DS+ ++ + L + ++ + ++ Sbjct: 153 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQGGNQLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 604 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + L+ ++ +G +L Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + I++ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 598 >gi|171320045|ref|ZP_02909115.1| protein-export membrane protein SecF [Burkholderia ambifaria MEX-5] gi|171094704|gb|EDT39748.1| protein-export membrane protein SecF [Burkholderia ambifaria MEX-5] Length = 316 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF +N L+RLQ + G + AQ + V + P + Sbjct: 61 LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMTALKAQSPDVS 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ IRF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA+L ++GYSVN+ VV++DR+R+ + +S ++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERRMSVAEVINHAITTTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|307252704|ref|ZP_07534595.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859736|gb|EFM91758.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 604 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 278/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 93 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + V++ L V+ + E + Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIR----RVHTALEAASISPTEVSFSPSESGL 208 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 209 -------ATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A T L ++ T+G +L G Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 487 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602 >gi|303250185|ref|ZP_07336387.1| preprotein translocase subunit SecD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651248|gb|EFL81402.1| preprotein translocase subunit SecD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 615 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 278/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 104 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + V++ L V+ + E + Sbjct: 164 QYKAVKKGENFATVIEFADEETANKAIRYIR----RVHTALEAASISPTEVSFSPSESGL 219 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 220 -------ATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 273 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 331 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 332 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 392 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 452 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 511 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 512 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 571 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 572 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 614 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A T L ++ T+G +L G Sbjct: 440 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 498 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 499 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 555 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 556 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 613 >gi|254253199|ref|ZP_04946517.1| SecD/SecF/SecDF export membrane protein [Burkholderia dolosa AUO158] gi|124895808|gb|EAY69688.1| SecD/SecF/SecDF export membrane protein [Burkholderia dolosa AUO158] Length = 316 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 94/306 (30%), Positives = 159/306 (51%), Gaps = 6/306 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ L GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFVAAVFFLLHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR L L D QNF +N L+RLQ + G + AQ E V + P T Sbjct: 61 LEPVRDTLGKLGYADAQVQNFGTSRNVLIRLQLKQGLTSAQQS--EQVMTALKAQSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ RF+W +A+ + + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA+L ++GYSVN+ VV++DR+R+ + +S +++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA-- 828 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 829 -KNARI 833 K ++ Sbjct: 298 IKEKKV 303 >gi|330969086|gb|EGH69152.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. aceris str. M302273PT] Length = 303 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 160/286 (55%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S + Q+F + LVR+ + Q + + ++ E V Sbjct: 63 LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVADA----LRKAGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIVALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|310643548|ref|YP_003948306.1| preprotein translocase subunit secf [Paenibacillus polymyxa SC2] gi|309248498|gb|ADO58065.1| preprotein translocase subunit SecF [Paenibacillus polymyxa SC2] Length = 304 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 83/297 (27%), Positives = 155/297 (52%), Gaps = 8/297 (2%) Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + ++++ W SI+ ++ I L GLNYG+DF+ G + V + V Sbjct: 1 MRFNWDYKYVKMSKWFYTFSIIVTLLGILSLSIFGLNYGVDFRSGSNVDVNLTKVVTQEQ 60 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 ++S L+ IG E+ + Q + + K + + Sbjct: 61 IQSLLDEKGIGKEVDYTPGKERFGIRFSQV------LTDQQVNDFKTSFNKELDPKASFE 114 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 V ++++EL R I V+++++A+ IYI IRF+W FA+ AI +L+ D + F++ Sbjct: 115 VNTVDTEMAQELERNAIWAVLLASVAIAIYISIRFEWRFAVAAIVSLLHDAFLVISIFSI 174 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGR 771 F +E +LT + A+LT++G+S+ND VV++DR+R+N++ + ++D SI +T+ R Sbjct: 175 FRLEVDLTFITAILTIVGFSINDTVVIFDRIRENLRFAKKKSRADLEQVVDHSIAQTMTR 234 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S+ T FI+ + + ++GG I F++ M G++ A SSIFIA+P+ + + + Sbjct: 235 SLATVFTVFIASVCLFIFGGESIRMFSLAMVIGLLFGAYSSIFIASPLWVALKGKQK 291 >gi|329120263|ref|ZP_08248931.1| protein-export membrane protein SecD [Neisseria bacilliformis ATCC BAA-1200] gi|327462604|gb|EGF08927.1| protein-export membrane protein SecD [Neisseria bacilliformis ATCC BAA-1200] Length = 616 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 163/506 (32%), Positives = 270/506 (53%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 + + P M N + LGLDLRGG H ++VD + + Y+ ++R L K+ I Sbjct: 104 NQIANTPDWMAKIRANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYAGDIRRELAKQKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 N +++ F D+ EN+ ++ L +TT + + Sbjct: 164 RSGQAVINDNSLSIPFQDAAELENVLPQLQRLLPEA------------TLTTDGSRLVLT 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ + + A+EQ++ + R++++G++E IQ+ G+ RI +QLPG QD ++ + ++ Sbjct: 212 LSEQALANIRKQAVEQNITTLHNRVNELGVAEPVIQQAGADRIAVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRD--------SDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + + L+ +VE++G ++ Sbjct: 272 GRTATLEVRMVNEDQAALQAALDGNVPEGYELLKTAGDRPQPLLISKQVELTGDNI-DDA 330 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 P V++SFD +GA F ++TR+N+GK +A+VL + V+TAP IN+ IP+ Sbjct: 331 QPGQNDKGLPGVNVSFDNVGAEIFADLTRNNVGKGMAMVLVEQGKAEVVTAPTINEPIPN 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 GK ISG+ ++ A ++ +LRAGSL + IVEER +GA LG+++I KG + + G Sbjct: 391 GKTIISGSMSLAEAQDISLLLRAGSLAAPMEIVEERTIGASLGAENIQKGVHSTLWGFAA 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + +FM+ Y G + ++ N++L +A LS L ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VAVFMMFYYRLMGFFSVLALAANILLLVAALSFLHATLTLPGIAAMALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++ G+ A+ TI DSNIT+LIA + L FG G VRGFA+ + Sbjct: 511 NERIREELRDGMKPQAAIAEGYKHAWDTIVDSNITSLIAGIALLLFGSGPVRGFAVVHCI 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 IL SMF+++ + R + ++ Sbjct: 571 GILTSMFSSVVVSRMFVNLWYGRRRK 596 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 82/208 (39%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +G + E I+KG+ + A+ Sbjct: 393 TIISGSMSLAEAQDISLLLRAGSLAAPMEIVEERTIGASLGAENIQKGVHSTLWGFAAVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ ++ ++ L +I + + L +AA+ +G +++ V++ Sbjct: 453 VFMMFYYRL-MGFFSVLALAANILLLVAALSFLHATLTLPGIAAMALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I + V +++ + I+ + + ++G + FA+ Sbjct: 512 ERIREELRD---GMKPQAAIAEGYKHAWDTIVDSNITSLIAGIALLLFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ ++ + Y R K Sbjct: 569 CIGILTSMFSSVVVSRMFVNLWYGRRRK 596 >gi|323143766|ref|ZP_08078434.1| export membrane protein SecF [Succinatimonas hippei YIT 12066] gi|322416479|gb|EFY07145.1| export membrane protein SecF [Succinatimonas hippei YIT 12066] Length = 315 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 173/306 (56%), Gaps = 5/306 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 I + + I FM+ + + I I ++ GLN+G+DF GGI + + P+ Sbjct: 1 MMQFIKEGVVIPFMKIKEIVEICVTILVISCIAVMAIKGLNWGLDFTGGIVVETKYSEPM 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL VR + Q+F + ++R+ + G + Q V + V ++ P + Sbjct: 61 DLEKVREAYAQQGVEG-VTQHFGSTSDVMIRVAPKEG--LNQQIVADKVMTAAKQLDPNA 117 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 T+ +E VGP + EL++ GI+ +++S IA+L YI RF+W A GA+ +L D+ LG Sbjct: 118 TLSRSEYVGPAVGEELVQSGILAIVVSLIAILAYIAFRFEWRMATGAVISLAYDVIVVLG 177 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ + IE++LT +AAVLT++GYS+NDK+VV+DR+R+N + +S L D S+ +TL Sbjct: 178 VFSFWQIEYDLTVLAAVLTVVGYSLNDKIVVFDRIRENASRVSRDVSMEHLFDISLTQTL 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA--PILLFIYDWR 827 R++ TS I+V+ + V+GGS+I FA+ + GIV SSI++A+ P+LL I Sbjct: 238 SRTIITSGTTLITVICLLVFGGSLIFGFALAVTIGIVFGTFSSIYVASTWPLLLKIQRRH 297 Query: 828 AKNARI 833 +I Sbjct: 298 ILPMKI 303 >gi|91790474|ref|YP_551426.1| preprotein translocase subunit SecD [Polaromonas sp. JS666] gi|91699699|gb|ABE46528.1| protein-export membrane protein SecD [Polaromonas sp. JS666] Length = 624 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 160/519 (30%), Positives = 273/519 (52%), Gaps = 27/519 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + LL P +L + LGLDLRGG H +L+VD + + Sbjct: 105 VVALNLLSRSPAWLTSLHA---------FPMYLGLDLRGGVHFMLQVDMQAALTKRAESL 155 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 S ++R L+++ I + + I + DS + + D + Sbjct: 156 SGDIRLSLREKNIRHGGISRNAQAIDIKVRDSETLASAKALIQDQF--------PDLQTV 207 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + TE +++ + ++ A++Q+M + RI+++G++E IQ+ G RI++QL Sbjct: 208 DVPEGTEYKLTASIKPEAARRIQDQALKQNMVTLHNRINELGVAEPVIQQQGLDRIVVQL 267 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP-------NNSKKGFMFGVRFLRDSDGNQYLVEDK 246 PG QD ++ + +LG TA + V N+ FG + +G +V+ + Sbjct: 268 PGVQDTAKAKDILGRTATLEMRLVEDSAEARAAENNTGAVPFGTERFFERNGQAVIVKKQ 327 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VL 303 V ++G +L A FD + +P VD++ D G R + +R+N+ K +A++L + + Sbjct: 328 VILTGENLTDAQPGFDSQNQQPKVDLTVDAKGGRIMRDTSRENLKKRMAILLFEKGKGEV 387 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 + Q+ + QISG+ ++ A LA +LRAGSL + I+EER +G LG+D+I K Sbjct: 388 LTAPVIQSELGNRFQISGSMSVSEANDLALLLRAGSLAAPMEIIEERTIGPTLGADNISK 447 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G ++ G V+IV FM Y +GL++ ++ +N++L +A+LS+L ATLTLP +A + L Sbjct: 448 GFHSVSWGFVVIVAFMAAYYMLFGLISGLALAVNLLLLVAVLSMLQATLTLPGMAAMALA 507 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+A+DSN+L+NER+REE R S ++ G+ RA++TI DSN + LI + L FG G Sbjct: 508 LGMAIDSNVLINERVREELRNGASAQAAIHAGYERAWATILDSNTSTLIVGLALLAFGSG 567 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 VRGFA+ + IL SMF+A+ R ++ +K Sbjct: 568 PVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGRQKKLK 606 Score = 108 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 81/209 (38%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G + + + I +GP + + I KG V + ++ ++ Sbjct: 404 SGSMSVSEANDLALLLRAGSLAAPMEIIEERTIGPTLGADNISKGFHSVSWGFVVIVAFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F L + L +++ + ++ L +AA+ +G +++ V++ +R+ Sbjct: 464 AAYY-MLFGLISGLALAVNLLLLVAVLSMLQATLTLPGMAAMALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + ++ + I L + +G + FA+ G Sbjct: 523 REELR---NGASAQAAIHAGYERAWATILDSNTSTLIVGLALLAFGSGPVRGFAVVHCIG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y + K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGRQKKLKTV 608 Score = 43.9 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 25/120 (20%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + + I L LPNF ++ +++ Sbjct: 3 RYPAWKYAIIVVALLIAALYTLPNFFGEAPA-------------------------VQIS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + LK GI + + F D+ + D V L Sbjct: 38 SGKSTVKIDTTTMARVEQALKDVGITADVIALEGTSVKARFGDTDTQLKAKDAVQKALSP 97 >gi|28868623|ref|NP_791242.1| protein-export membrane protein SecF [Pseudomonas syringae pv. tomato str. DC3000] gi|213971535|ref|ZP_03399646.1| protein-export membrane protein SecF [Pseudomonas syringae pv. tomato T1] gi|301386140|ref|ZP_07234558.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. tomato Max13] gi|302060702|ref|ZP_07252243.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. tomato K40] gi|302135103|ref|ZP_07261093.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851861|gb|AAO54937.1| protein-export membrane protein SecF [Pseudomonas syringae pv. tomato str. DC3000] gi|213923727|gb|EEB57311.1| protein-export membrane protein SecF [Pseudomonas syringae pv. tomato T1] gi|330965898|gb|EGH66158.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. actinidiae str. M302091] gi|331019397|gb|EGH99453.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 303 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 159/286 (55%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S + Q+F + LVR+ + Q + + ++ E V Sbjct: 63 LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAISALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|294140347|ref|YP_003556325.1| protein-export membrane protein SecD [Shewanella violacea DSS12] gi|293326816|dbj|BAJ01547.1| protein-export membrane protein SecD [Shewanella violacea DSS12] Length = 616 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 164/522 (31%), Positives = 271/522 (51%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EV + V ++ + R+ L+ E I Sbjct: 104 NLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVKMGEAVRKMVESKMADFRTDLRGERI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R+ I + F D+ + D + + Sbjct: 164 RYAGIRESAKGIEIKFRDADNLAKAERFLKSRGN--------DMVFTDSSSDGNYYLIAN 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS+ + QV A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 LSETYLKQVKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + G Q + +V +SG H+ GA +F Sbjct: 276 GATASIEFHMVDEKADAAAIASGRISANAKIYDRRQGGQVALYKEVMLSGTHIQGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP--------------- 306 D + +P V I+ D G F VT+DNIGKP+A + Sbjct: 336 DEYS-RPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGAKNPDGSIKLERIEEV 394 Query: 307 --VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 V G+ + A LA +LRAG+L + IVEER +G LG+ +I G Sbjct: 395 ISVATIQARLGRNFVITGLDHSEAQNLALLLRAGALIAPVVIVEERTIGPSLGAQNIQNG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+ ++++FM+V Y +GL+A+ ++ N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 MEAMIWGMAVVLIFMLVYYRAFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE R +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFTAI RA++ + K++K + I Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKRVKKLSI 616 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 90/234 (38%), Gaps = 6/234 (2%) Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 S+++ I + + + + ++ I +G Sbjct: 384 GSIKLERIEEVISVATIQARLGRNFVITGLDHSEAQNLALLLRAGALIAPVVIVEERTIG 443 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIE 717 P + + I+ G+ +I +LI++ + ++ F L A L ++ +G ++ G Sbjct: 444 PSLGAQNIQNGMEAMIWGMAVVLIFMLVYYR-AFGLIANLALTANLVMVVGVMSMIPGAV 502 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ S + I + ++ Sbjct: 503 LTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHEGYGNAFSTIADANI 559 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 F++ L + G + FA+ + GI + ++I I+ R K Sbjct: 560 TTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKRVKK 613 >gi|329905135|ref|ZP_08274054.1| Protein-export membrane protein SecF [Oxalobacteraceae bacterium IMCC9480] gi|327547695|gb|EGF32480.1| Protein-export membrane protein SecF [Oxalobacteraceae bacterium IMCC9480] Length = 312 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 167/302 (55%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FMR IS L + ++ LF +GL++ I+FKGG + V P + Sbjct: 1 MELFRIKKTIPFMRHALIFNAISALTFVLAVFFLFHNGLHFSIEFKGGTLIEVSYKTPAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR +ESL D Q+F ++ ++RL +PG + AQ V + + Sbjct: 61 IEQVRQTVESLGYTDNQVQSFGKAEDVMIRLPSRPGVNTAQQS--SKVLEALKLRDADVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ EL + G+ + + + ++IY+ IRF+W +A+ AI + D+ LGF Sbjct: 119 LRRVEYVGPQVGAELAQNGLTALAMVIVGIMIYLAIRFEWKYAVSAIIANLHDVIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+LT +AAVL ++GYSVN+ VVV+DR+R+N + + S ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAAVLAVLGYSVNESVVVFDRIRENFRTQRKT-SVVEVIDSAITSTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R+V T + + VL M ++GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 238 RTVITHGSTQMMVLSMLLFGGPSLHYFAVALTIGILFGIYSSVFVAAAVAMWLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|260655924|ref|ZP_05861393.1| protein-export membrane protein SecF [Jonquetella anthropi E3_33 E1] gi|260629540|gb|EEX47734.1| protein-export membrane protein SecF [Jonquetella anthropi E3_33 E1] Length = 297 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 152/293 (51%), Gaps = 2/293 (0%) Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + A FM+ R + + ++ + ++ L+ G N GIDF GG L V + P+ + Sbjct: 1 MKKPFAFPFMKYRKFFIALACVMAVTGALLVLCIGFNKGIDFTGGNLLQVEFSDPISVGA 60 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 VR+ L + Q F ++ +R Q + Q ++ + + Sbjct: 61 VRAELAKEGYARATIQAF-SDRGVNIRFQGTEEGADDQALRDSLMAALDKIQAGKVKLLS 119 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 E+VGP + EL + ++ ++ I +LIY+ RF++ FA+ ++ L+ D LGFF L Sbjct: 120 FEMVGPTVGGELTHQAVLATTLALIGILIYVAFRFQFRFAVVSVLALVHDTMIVLGFFCL 179 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 F E + +AA+LT +GYS+ND +V+ DR+R+N K +I L+D SIN+TLGR+V Sbjct: 180 FHREIAMPFIAAILTTVGYSLNDTIVIMDRVRENWKQ-RRTIGMAALMDNSINQTLGRTV 238 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 T++ F+ VL + GG V+ +F++ + GI+ SS+ L+F YD Sbjct: 239 NTTVTTFMPVLAFYLLGGPVLANFSLALMIGIIAGTFSSLCFTTSALVFWYDK 291 >gi|238026271|ref|YP_002910502.1| preprotein translocase subunit SecF [Burkholderia glumae BGR1] gi|237875465|gb|ACR27798.1| Protein export protein SecF [Burkholderia glumae BGR1] Length = 316 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 90/298 (30%), Positives = 157/298 (52%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ L GL+ ++F GG L V + + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLVHRGLHLSVEFTGGTVLEVQYQQAAE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D Q+F +N ++RL + G + AQ + V + P Sbjct: 61 LEPVRAALGKLGYADAQVQSFGTSRNVMIRLALKSGLTSAQQS--DQVMAGLKAQNPDVQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ +++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERRMTVQEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R+V T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTVITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIRRE 295 >gi|78185900|ref|YP_373943.1| preprotein translocase subunit SecF [Chlorobium luteolum DSM 273] gi|78165802|gb|ABB22900.1| protein translocase subunit secF [Chlorobium luteolum DSM 273] Length = 311 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 146/309 (47%), Gaps = 11/309 (3%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 I + +I F+R R G+S+ + L GLNYGIDF+GG ++ + + V + Sbjct: 1 MRIFNSTSINFLRYRKIAYGVSLAILLAGFVSLAVKGLNYGIDFRGGSEVVIRFEKDVPV 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 VRS L + Q + L ++L I Sbjct: 61 GEVRSVLRDAGVSGTLKQYGL---DRSFLLSTVFSGETNDLKLLITSALNARMKDAPHEI 117 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + VGP I+ +L + ++ + +A+L+Y+ IRF+ FA + + D+ LG F Sbjct: 118 VRIDAVGPSIASDLKWSAVKAMVAALLAILLYVGIRFELKFAAAGVVAIFHDVLIVLGLF 177 Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 +L G +E + + +AA LT+ GYS+ D VVVYDR+R+ ++ + + ++S Sbjct: 178 SLLGGVFDVMPLEMDQSIIAAFLTIAGYSITDTVVVYDRIRERIR-NQKPSEYERIFNES 236 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +N+TL R++ TS ++V + ++ G I FA + GI++ SSIF+AAP++ Sbjct: 237 MNQTLSRTIITSGTTLLTVFVLFLFAGPAIRGFAFAVFAGILIGTYSSIFVAAPLVFDWL 296 Query: 825 DWRAKNARI 833 R+ Sbjct: 297 RLSKTPVRL 305 >gi|327398933|ref|YP_004339802.1| protein-export membrane protein SecD [Hippea maritima DSM 10411] gi|327181562|gb|AEA33743.1| protein-export membrane protein SecD [Hippea maritima DSM 10411] Length = 534 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 183/546 (33%), Positives = 292/546 (53%), Gaps = 33/546 (6%) Query: 1 MRNNPW-LVILYSMICCIGLLIALPNFLPQSML----DRFPSAMPKNRISLGLDLRGGSH 55 M+ + W + + ++ + LP + + F + +P + I+LGLDL+GG H Sbjct: 1 MKTSIWIKLTIIIVVVAVFGAYTLPTLIGKKSAKDFSSMFSNILPTDTINLGLDLKGGMH 60 Query: 56 LVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI--QNKITLSFADSRFKENIAD 113 LVL VD D V L +D L+ L I S+ KIT+ D+ + + Sbjct: 61 LVLGVDTDKAVYVVLSRAADNLQQQLTNARIAADSVVPSLKDYKITIHLVDTHDLDKAIN 120 Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173 + N V + I I L ++ + ++ AIEQ++ +IR R++Q Sbjct: 121 LIISNF------------PNYAVISDSNPIVIQLKKDVVAKIKERAIEQAISVIRNRVNQ 168 Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233 G++E T+ R G I++ LPG ++ +R +LLG TA++ H V S + G Sbjct: 169 FGVTEPTVVRAGGDHIVVDLPGIKNANRAVRLLGETARLELHLVDDKVSVADALNGELPA 228 Query: 234 RDSD--------------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279 D ++V+ + I+G + AT F ++P V + GA Sbjct: 229 DDEILYQIQRDPTTGEDTKVPFVVKKEPVITGDMITNATVRFGGTMNQPYVAFELNSEGA 288 Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339 + F T +IGK LA+VLD + +APVI I G+ QI+GNFT+E A LA +LR+GS Sbjct: 289 KIFANFTATHIGKRLAIVLDNLIYSAPVIQSRIGGGRGQITGNFTLEEAHDLALVLRSGS 348 Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399 LP + ++++ +G LG SI KG A++ G + ++LFMI Y GL+AD ++ LN+I Sbjct: 349 LPAPVKVLQKVTIGPSLGKISIEKGKKAMIFGALAVILFMIFYYKLSGLLADLALILNII 408 Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459 + + +L ATLTLP IAGI L +G+AVD+N+L+ ERIREE +S+ +++ G++RA Sbjct: 409 IIFGTMVMLHATLTLPGIAGIALTVGMAVDANVLIYERIREELLIGRSIHDAVNTGYARA 468 Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519 + TI D+NIT LI ++L+ FG G V+GFAITM + +L +MFTAI+ + + ++ K Sbjct: 469 FITILDANITTLIIALILYQFGSGPVKGFAITMAIGLLANMFTAITFTKTIFDIVLDRFK 528 Query: 520 MKSIDI 525 + I Sbjct: 529 PSKLSI 534 Score = 124 bits (311), Expect = 6e-26, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I KG +I A+A+++++ +K L A LIL+I G + Sbjct: 360 TIGPSLGKISIEKGKKAMIFGALAVILFMIFYYKLS-GLLADLALILNIIIIFGTMVMLH 418 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A + +G +V+ V++Y+R+R+ + + S D ++ + Sbjct: 419 ATLTLPGIAGIALTVGMAVDANVLIYERIREELLI---GRSIHDAVNTGYARAFITILDA 475 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I L + +G + FAI MA G++ ++I I + D + Sbjct: 476 NITTLIIALILYQFGSGPVKGFAITMAIGLLANMFTAITFTKTIFDIVLDRFKPSK 531 >gi|149191585|ref|ZP_01869831.1| protein export protein SecD [Vibrio shilonii AK1] gi|148834603|gb|EDL51594.1| protein export protein SecD [Vibrio shilonii AK1] Length = 618 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 153/524 (29%), Positives = 278/524 (53%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + LGLDLRGG H ++EVD D + + + RS L+++ I Sbjct: 104 NLAPATPNWLESIGANPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREDRI 163 Query: 87 GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+R + + + D+ +T + D + + Sbjct: 164 RYRSIRPSGKDGVEVLLRDAEQLAEAKAVLTTK--------HPDMDFFDSDSNGRFALVA 215 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 216 RFKETRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275 Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V + G +D DG +++ +V + G + ++ Sbjct: 276 LGATATLEFREVDSSADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILGGASITD-ASS 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + +R NIGK +A V Sbjct: 335 SADEYGRPQVNISLDSEGGNKMAAFSRQNIGKLMATVFAEYKDSGKRTPEGKVILDKHEE 394 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A + G++ ++LF +V Y ++GL A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 455 MGIKACITGMIAVMLFTLVYYRRFGLFANMALMANIVLIVGVMSMIPGATMTLPGIAGIV 514 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE ++ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 LTVGMAVDANVLIFERIREELKEGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + I+ SMFTAI R ++ + K++ + I Sbjct: 575 TGAIKGFAVTLSIGIITSMFTAIIGTRCLVNLVYGGKRINKLSI 618 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 91/213 (42%), Gaps = 5/213 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I IA Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIKACITGMIA 466 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F L A L+ +I +G ++ G L +A ++ +G +V+ V Sbjct: 467 VMLFTLVYYR-RFGLFANMALMANIVLIVGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ +K + + I + ++ I+ + + G I FA Sbjct: 526 LIFERIREELKE---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 582 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ GI+ + ++I ++ +Y + N Sbjct: 583 VTLSIGIITSMFTAIIGTRCLVNLVYGGKRINK 615 >gi|187922708|ref|YP_001894350.1| preprotein translocase subunit SecF [Burkholderia phytofirmans PsJN] gi|187713902|gb|ACD15126.1| protein-export membrane protein SecF [Burkholderia phytofirmans PsJN] Length = 316 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 155/302 (51%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS+L + ++ L GL+ ++F GG + V Sbjct: 1 MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLLHRGLHLSVEFTGGTVVEVQYPGAAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF ++ L+RL + G + AQ + V + P Sbjct: 61 LEPVRATLGKLGYADAQVQNFGTSRDVLIRLPLKQGYTSAQQS--DQVMTALKAETPQVQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + + ++IY+ RF+W +A+ + + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVVGIVIYLSFRFEWKYAVAGVIANLHDVIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ ++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKLTVIEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M ++GG + FA+ + GI+ SS+F+AA + ++ R Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFSVKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|257487216|ref|ZP_05641257.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009169|gb|EGH89225.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 303 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 160/286 (55%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S + Q+F + LVR+ + Q + + ++ E V Sbjct: 63 LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIIALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|167623488|ref|YP_001673782.1| preprotein translocase subunit SecF [Shewanella halifaxensis HAW-EB4] gi|167353510|gb|ABZ76123.1| protein-export membrane protein SecF [Shewanella halifaxensis HAW-EB4] Length = 315 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 168/299 (56%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 ++ + F+R S + + SI L T G+N+G+DF GG + + ++P Sbjct: 1 MLQILNVKGTVNFLRHALPISIFSAVLVLGSIATLATKGINWGLDFTGGTVVELEFSKPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +LS +R+NL + +G QNF ++ L+RL + + V +T++ Sbjct: 61 NLSAIRTNLSTEAVGGAVVQNFGSSRDVLIRLPVKDDFKSVDQ--VNDVMDAVTKLDSSV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E VGP++ +EL +G + V+++ I +LIY+ RF+W A+G++ L DI TLG Sbjct: 119 IQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLAVGSVAALAHDIIVTLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L +EF+LT +A +LT++GYS+ND +VV+DR+R+N S + ++++ SI +T+ Sbjct: 179 VFSLLQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKLRKS-TPEEVVNISITQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T+ + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296 >gi|307250320|ref|ZP_07532270.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307257112|ref|ZP_07538885.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306857647|gb|EFM89753.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306864383|gb|EFM96293.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 604 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 93 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + + + + + EIS Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S++ + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 202 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A T L ++ T+G +L G Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 487 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602 >gi|257455238|ref|ZP_05620473.1| protein-export membrane protein SecD [Enhydrobacter aerosaccus SK60] gi|257447200|gb|EEV22208.1| protein-export membrane protein SecD [Enhydrobacter aerosaccus SK60] Length = 631 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 155/526 (29%), Positives = 275/526 (52%), Gaps = 45/526 (8%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N I LGLDLRGG VLEVD V+ L+ + ++R+ L+ + I Sbjct: 105 NLAQTTPAWLRNIGGNPIKLGLDLRGGVRFVLEVDMSKTVSQRLENLTRDIRTELRNQKI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 V +++ QN +TL+F D+ ++ + + + + L+ I++ Sbjct: 165 AVTNLQAGQNNLTLNFVDNAARDQAINVLRSRFG-------TNYELQPLINAGGPAINMT 217 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q+ I Q+ A+ Q++ +R RI+++G++E+ +Q G++RI+++LPG QD + ++++ Sbjct: 218 LTQSTISQISQDAVTQNLTTLRNRINELGVAEAVVQSQGANRIVVELPGVQDTAEAKRVI 277 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY---------LVEDKVEISGIHLNGA 257 G TA + F V N+ ++ + L+E + ++G ++ Sbjct: 278 GRTANLEFRMVSEQNNTFQANPSGVLPAGTEAYSFGEVDSPQKTLLERQAVVTGRNVQD- 336 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----------------------- 294 + +P V+I+ D G R T ++GK + Sbjct: 337 AQAGMDQNGRPQVNITLDNAGGRLMQNTTAKSVGKQMAVLFIENKQRVTFQPDPVTGQNK 396 Query: 295 --AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 + Q + QI+G + A LA +LRAG+L + VEER + Sbjct: 397 EVRTPYAESHIINQATIQGVFGSTFQITGLDSNAEASELALLLRAGALAAPMYFVEERTI 456 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G LG D+I KG + G +L+ LFMI+ Y +GL+A+ ++ N+++ LA++SL+G+ L Sbjct: 457 GPSLGQDNIQKGMFSTQVGYLLVFLFMIIFYRLFGLIANIALIFNLMMILAIMSLIGSAL 516 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAGIVL IG+AVD+N+L+ ERIREE ++ GF+RA+++IFD+ +T LI Sbjct: 517 TLPGIAGIVLTIGMAVDANVLIFERIREELANGARPKSAIVAGFNRAFTSIFDAQLTTLI 576 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 +LF G G ++GFA+T+ + I S+FT++++ RA++ Y+ Sbjct: 577 VAFILFAIGTGPIKGFAVTLAIGIASSIFTSVTVTRALVQLAYGYR 622 Score = 155 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 88/250 (35%), Gaps = 4/250 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 D ++ + N + G + + Sbjct: 383 RVTFQPDPVTGQNKEVRTPYAESHIINQATIQGVFGSTFQITGLDSNAEASELALLLRAG 442 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +GP + ++ I+KG+ + + + +++ I ++ F L A LI + Sbjct: 443 ALAAPMYFVEERTIGPSLGQDNIQKGMFSTQVGYLLVFLFMIIFYRL-FGLIANIALIFN 501 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + L +L G L +A ++ IG +V+ V++++R+R+ + + I Sbjct: 502 LMMILAIMSLIGSALTLPGIAGIVLTIGMAVDANVLIFERIREELA---NGARPKSAIVA 558 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 N + I + G I FA+ +A GI + +S+ + ++ Sbjct: 559 GFNRAFTSIFDAQLTTLIVAFILFAIGTGPIKGFAVTLAIGIASSIFTSVTVTRALVQLA 618 Query: 824 YDWRAKNARI 833 Y +R R+ Sbjct: 619 YGYRKTVKRL 628 Score = 38.5 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 15/44 (34%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44 M W L ++ + L ALPN P + A + Sbjct: 1 MHYPAWKYFLIGIVLLLSTLYALPNLYPDKPAVQITGASASTTL 44 >gi|116751339|ref|YP_848026.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Syntrophobacter fumaroxidans MPOB] gi|116700403|gb|ABK19591.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Syntrophobacter fumaroxidans MPOB] Length = 1052 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 79/661 (11%), Positives = 177/661 (26%), Gaps = 30/661 (4%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ + GL+ L ++++P P + V Sbjct: 9 RPIFANVIAIVTIIFGLVTLL-----LLPVEQYPQITPPTVL---------VSTVYPGAS 54 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + ++ + + +T++F + V + Sbjct: 55 AEVVADTVAAPIEQQVNGVEHMLYMSSNSANDGSYSLTVTFEVGTNLDMAQVLVQNRVAI 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L D K+ + + I + + S D++ E Sbjct: 115 AEPTLPDDVKRQGVNVQKQSTSFIQFIALSSPDGSHDDLFLSNYATLNVRDELSRIEGVG 174 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L+ TT + N G QY Sbjct: 175 NVSVMGSASYSMRVWLDPEKLKSRSLTTQDVVDAIQEQNVQVAAGQIGQPPAPAGQNFQY 234 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V +S + + V + ++GAR + V Sbjct: 235 TVTTLGRLSDVE---------QFQNIIVKTTADSQVGARITRVKDVARVELGGQVYDQYF 285 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + A L + S Sbjct: 286 QMHGKPAAGIGIYQLPGANALDVSTKVSKKMAELSKSFPAGVTYDIPFDTTRFVTASIHE 345 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LVLIV+ + + + LV ++ + +I A ++ LG T+ + ++ G++ Sbjct: 346 VYKTLIEAGILVLIVILVFLQDWRAVLVPATTVPVTIIGAFAAMAALGFTVNILTLFGLI 405 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IG+ VD I++ E + + + + + + F G Sbjct: 406 LAIGIVVDDAIVIVENAAHHIERGLPPREATIKAMDEIIGPVIGITLVLMAVFLPTAFLG 465 Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-MKSIDINPLSRFFLIPDC 537 G R FA+T+ + +IS A+++ A +R +++ + + + Sbjct: 466 GITGQLYRQFALTIAATAVISAINAVTLKPAQCALWLRKNPEHRNLFFRGFNAVYSRCEH 525 Query: 538 IA--IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + + R + + + L G + + D + Sbjct: 526 VYSIMIAWMVRHTVAMLILFAVLIGSATWGFLALPTGFLPTEDQGYAIASVLLPDAASQE 585 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 E + + G ++L Y D + + E Sbjct: 586 RTREVVAKMNDMIAKTPGVVDYLTVGGYSVLDGTGASNAAAFWIIFKDWKERKDPSLSQE 645 Query: 656 I 656 Sbjct: 646 A 646 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 11/235 (4%) Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 + + G + + S ++ + + K V +T Sbjct: 284 YFQMHGKPAAGIGIYQLPGANALDVSTKVSKKMAELSKSFPAGVTYDIPFDTTRFVTASI 343 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 E+ + I I+ I +L+++ W L TT+ + I A G N+ Sbjct: 344 HEVYKTLIEAGILVLIVILVFLQ---DWRAVLVPATTVPVTIIGAFAAMAALGFTVNILT 400 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYTSMAAFI 781 + ++ IG V+D +V+ +N + + R+ K+++E +G + ++ Sbjct: 401 LFGLILAIGIVVDDAIVIV----ENAAHHIERGLPPREATIKAMDEIIGPVIGITLVLMA 456 Query: 782 SVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 LP A G G + FA+ +A V++A +++ + ++ + Sbjct: 457 VFLPTAFLGGITGQLYRQFALTIAATAVISAINAVTLKPAQCALWLRKNPEHRNL 511 Score = 58.5 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 9/162 (5%) Query: 673 VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 +I +L+Y+ + W I + L + T+ AL + N+ ++ L Sbjct: 875 MIFGLAILLVYLVLAAQYESWTNPAAVILVVPLALLGTVIALALTATDNNIYTQIGIVLL 934 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 I + + +++ + R+ L D ++ + TS A + + P+ Sbjct: 935 IALASKNAILIVEFARE---LRADGKDLLDAAVQAARMRFRPILMTSFAFIMGIYPLVRA 991 Query: 790 GG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 G + + + G++ + ++ + Sbjct: 992 EGASAASRRALGTAVFGGMLASTFLAVLFVPVFYVVWQRLSE 1033 >gi|16763787|ref|NP_459402.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16418911|gb|AAL19361.1| preprotein translocase, IISP family, part of the channel [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Length = 615 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 294/524 (56%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 104 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLREKGI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F DS+ ++ + L + ++ + + ++ Sbjct: 164 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 273 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 392 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 511 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 615 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + L+ ++ +G +L Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + I++ Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 609 >gi|330872897|gb|EGH07046.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 303 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 159/286 (55%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S + Q+F + LVR+ + Q + + ++ E V Sbjct: 63 LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R+V TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTVATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAISALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|319957741|ref|YP_004169004.1| protein-export membrane protein secd [Nitratifractor salsuginis DSM 16511] gi|319420145|gb|ADV47255.1| protein-export membrane protein SecD [Nitratifractor salsuginis DSM 16511] Length = 522 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 166/540 (30%), Positives = 301/540 (55%), Gaps = 35/540 (6%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + V+++ G++ ++P+ + +I+LGLDL+GG H++L V Sbjct: 1 MKRLNYRVVIFIAALIFGVVFSIPSLIQSK---------EGKKITLGLDLQGGLHMLLGV 51 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D+ + L+ + ++ ++ I + + +K+T DS + + L+ Sbjct: 52 KSDEAIKSRLKSIAGTIKYIMEDNDIVIDDLAVEGDKVTFKVLDSDDIPKAKELLKKELE 111 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 GV+ V + ++ L+ + + AI+Q+++ IR R+DQ G++E T Sbjct: 112 GVS------------VLENQGTFTVTLTPKEVARTKKQAIDQAVDTIRNRLDQFGLAEPT 159 Query: 181 IQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229 + + G+ +IL+++PG + D R+R+L+ A + V + + +G Sbjct: 160 VAKQGTDKILVEVPGIKTPADEQRIRELIARAAHLQMMAVDEDRAARVYSMSPAEAKKYG 219 Query: 230 VRFLRD--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 L D + +YL++ + G L A F + ++PV++ + GA+ F + + Sbjct: 220 DVILPDVKNPKEKYLLKAIPILDGSMLTDAKVGF-DRNNQPVINFKLNGEGAKIFGDFSG 278 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 ++GK +A+VLD +V +APVI + I G QISGNFTI+ A +A LR+G+L + ++ Sbjct: 279 KSVGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFTIDEANDIAIALRSGALLAPVYVM 338 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407 E+R+VG +G+DSI + A++ G VL+V+FM++ YG GLVAD ++ N+ L LA+++L Sbjct: 339 EKRSVGPSMGADSIRQSMIALILGFVLVVIFMVIYYGMAGLVADIALVGNLFLILAVMAL 398 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 GATLTLP +AGIVL +G+AVD+N+++NERIRE + S+ +++ G++ A++ I+D+N Sbjct: 399 FGATLTLPGMAGIVLTVGMAVDANVIINERIRELLHEGASIPKAIEEGYANAFTAIWDAN 458 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 +T LI+ VVL+ +G G ++GFA+TM + IL SM TAI + + ++ Sbjct: 459 VTTLISAVVLYAYGTGPIKGFALTMSIGILASMLTAILGTHGIYQAFMDKITRDKLNFWF 518 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 85/203 (41%), Gaps = 4/203 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + ++ + VGP + + IR+ ++ +I+ + ++I++ I + Sbjct: 315 TIDEANDIAIALRSGALLAPVYVMEKRSVGPSMGADSIRQSMIALILGFVLVVIFMVIYY 374 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L A L+ ++ L ALFG L +A ++ +G +V+ V++ +R+R+ + Sbjct: 375 GM-AGLVADIALVGNLFLILAVMALFGATLTLPGMAGIVLTVGMAVDANVIINERIRELL 433 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 S I++ ++ IS + + +G I FA+ M+ GI+ + Sbjct: 434 HE---GASIPKAIEEGYANAFTAIWDANVTTLISAVVLYAYGTGPIKGFALTMSIGILAS 490 Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831 ++I I D ++ Sbjct: 491 MLTAILGTHGIYQAFMDKITRDK 513 >gi|260596778|ref|YP_003209349.1| preprotein translocase subunit SecD [Cronobacter turicensis z3032] gi|260215955|emb|CBA28573.1| Protein-export membrane protein secD [Cronobacter turicensis z3032] Length = 615 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 172/538 (31%), Positives = 288/538 (53%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D ++ + Sbjct: 99 FVVALNLAPATPRWLTAISAE---------PMKLGLDLRGGVHFLMEVDMDTALSKLQEQ 149 Query: 73 YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+++G+ ++R+ N +T+ F DS ++ A +T + Sbjct: 150 NMDSLRSDLREKGLSWTNVRKADNYGVTIQFRDSDIRDAAASYLTARHR----------- 198 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 ++ + + + V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI++ Sbjct: 199 DMVVSSEGDNSLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 258 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V N + G +G ++ + Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNSNVDRTAAAAGRIPGDSEVKMTREGQPVVLYKR 318 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV---- 302 V ++G H+ +T+ D V+IS D G T+DNI KP+A + Sbjct: 319 VILTGDHITDSTSGVDQYNMPQ-VNISLDSSGGNIMSNFTKDNIHKPMATLFVEYKDSGK 377 Query: 303 --------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 + QA I+G A L+ +LRAG+L + IVE Sbjct: 378 KDANGRSILMKQEEVINVATIQARLGQNFVITGIDNPNEARQLSLLLRAGALIAPIQIVE 437 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A +AGL + +LFMI+ Y K+GL+A ++ N++L + ++SLL Sbjct: 438 ERTIGPTLGMQNITQGLEACLAGLAVSILFMILFYKKFGLIATTALLANLVLIVGIMSLL 497 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE +SV ++D G+ A+S+IFD+N Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDAN 557 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T LI ++L+ G GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 558 VTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 615 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 93/248 (37%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N S+ + N + L + G + + Sbjct: 369 FVEYKDSGKKDANGRSILMKQEEVINVATIQARLGQNFVITGIDNPNEARQLSLLLRAGA 428 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + ++++ + +K F L A T L+ ++ Sbjct: 429 LIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMILFYK-KFGLIATTALLANL 487 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ + + S + ID+ Sbjct: 488 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDE 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I V+ + G I FAI G+ + ++I I+ + Sbjct: 545 GYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 604 Query: 824 YDWRAKNA 831 Y + N Sbjct: 605 YGGKRINK 612 >gi|190150394|ref|YP_001968919.1| preprotein translocase subunit SecD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915525|gb|ACE61777.1| protein-export membrane protein SecD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 615 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 104 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + + + + + EIS Sbjct: 164 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S++ + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 213 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 273 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 331 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 332 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 392 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 452 KGMEAGMYGLILTIAFCLIYYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVL 511 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 512 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 571 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 572 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 614 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 83/178 (46%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A L ++ T+G +L G Sbjct: 440 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAAAALTANMVLTIGLMSLIG 498 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 499 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 555 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 556 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 613 >gi|165976490|ref|YP_001652083.1| preprotein translocase subunit SecD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307263738|ref|ZP_07545344.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876591|gb|ABY69639.1| protein-export membrane protein SecD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306870859|gb|EFN02597.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 604 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 93 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + + + + + EIS Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S++ + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 202 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 83/178 (46%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A L ++ T+G +L G Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAAAALTANMVLTIGLMSLIG 487 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602 >gi|330950807|gb|EGH51067.1| preprotein translocase subunit SecD [Pseudomonas syringae Cit 7] Length = 622 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 164/521 (31%), Positives = 273/521 (52%), Gaps = 40/521 (7%) Query: 35 FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 P+ + + + LGLDL GG H +LEVD D ++ L++Y E++S L+KE + S+ Sbjct: 112 TPTWLRHLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSL 171 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ N I L F D +E V + ++ + L+ Sbjct: 172 PQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTPAK 223 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++LG TA Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F + + R+ VE + I+G + A A+FD +P V+ Sbjct: 284 LEFRLGAGPDD-SKGTTEMFEFREGGRPAAGVERGLIITGDQVTDAKASFDEHG-RPQVN 341 Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304 I+ D G TR N+G+ + + + + Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVDGVEKDVPVQTFKEDKKII 401 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + Q+ + +I+G + LA +LRAG L + EER +G LG+D+I KG Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 A + G++ + LF++ +Y +GL+A ++ LN+++ LAL+SLLGATLTLP IAGIVL + Sbjct: 462 IDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTM 521 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+ VD+N+L+ RIREE +V +++ GF RAY+ I D+N+T L+ +LF G G Sbjct: 522 GMGVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 92/250 (36%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + D + ++ L G + + + Sbjct: 374 TTTYTKQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMGVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 44.3 bits (102), Expect = 0.096, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|302879494|ref|YP_003848058.1| protein-export membrane protein SecF [Gallionella capsiferriformans ES-2] gi|302582283|gb|ADL56294.1| protein-export membrane protein SecF [Gallionella capsiferriformans ES-2] Length = 310 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 96/302 (31%), Positives = 165/302 (54%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM + IS++ + ++ L T GLN+G+DF GG + V +P D Sbjct: 1 MELFKIKRDIPFMSYGRYTTAISLVTFLFAVLFLVTRGLNFGVDFTGGTVMEVHYAQPAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR L +++ D QNF + L+++ + +VA ++ E V + Sbjct: 61 LVKVREQLAGVKLPDALVQNFGSSHDVLIQIPLK--QNVAGAKLSEQVMGALHSQDASVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ R+LI G + +++ ++ ++ Y+W+RF+W F L AI + D+ LGF Sbjct: 119 MRRVEFVGPQVGRDLIENGAMALLLVSLGIVGYLWVRFEWKFGLSAIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VVV+DR+R+N + ++ID +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVVFDRIRENFRKM-RRAEVTEIIDNAITRTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + V M GG + FA+ + GI+ + SS+ +A+PIL+++ R Sbjct: 238 RTIITHGCTQMMVGAMLFLGGETLHYFAMALTIGILFSIYSSVLVASPILMWLGVSREDF 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|167895806|ref|ZP_02483208.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 7894] Length = 627 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 87/205 (42%), Gaps = 4/205 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAK 829 I+ + S++F + ++ Y R K Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKK 593 >gi|294635294|ref|ZP_06713793.1| protein-export membrane protein SecD [Edwardsiella tarda ATCC 23685] gi|291091328|gb|EFE23889.1| protein-export membrane protein SecD [Edwardsiella tarda ATCC 23685] Length = 607 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 163/527 (30%), Positives = 282/527 (53%), Gaps = 43/527 (8%) Query: 30 SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P M + LGLDLRGG H +++VD D ++ + D LRS L+++GI Sbjct: 93 NLAPATPKWMEMIGAEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLREKGI 152 Query: 87 GVFSMR----QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142 ++R + + F DS + D ++ + + + Sbjct: 153 AYSTIRKLPDPSSGGVEIHFRDSAARNQANDYLSSRHR-----------DLVFSNVGDTT 201 Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202 + V+S + + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R Sbjct: 202 LKAVMSDDRLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARA 261 Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGA 257 +++LG TA + F V N + G DG ++ +V ++G H+ + Sbjct: 262 KEILGATATLEFRLVNGNVDAQAAASGRVPGDSEVKYTRDGRPVVLYKRVILTGDHITDS 321 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP----------- 306 T++ + ++P V+IS D G T+DNIGKP+A + + Sbjct: 322 TSS-QDEFNRPQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKKDANGKPILVK 380 Query: 307 -------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ +I+G A L+ +LRAG+L + IVEER +G LG Sbjct: 381 QEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQ 440 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIA 418 +I +G A + GLV ++FM+V Y K+GL+A ++ N+++ + ++SLL ATLT+P IA Sbjct: 441 NIQQGLEACLWGLVASIIFMVVFYKKFGLIATTALLANLVMIVGVMSLLPGATLTMPGIA 500 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GIVL + +AVD+N+L+NERI+EE R ++V ++ G+ A+S+I D+N+T LI V+L+ Sbjct: 501 GIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILY 560 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 561 AVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 607 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 81/177 (45%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + +A +I++ + +K F L A T L+ ++ +G +L Sbjct: 432 TIGPTLGMQNIQQGLEACLWGLVASIIFMVVFYK-KFGLIATTALLANLVMIVGVMSLLP 490 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ ++ + + I + + Sbjct: 491 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHEGYKGAFSSIID 547 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI A G+ + ++I I+ +Y + N Sbjct: 548 ANVTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINK 604 >gi|170703131|ref|ZP_02893947.1| protein-export membrane protein SecF [Burkholderia ambifaria IOP40-10] gi|170131964|gb|EDT00476.1| protein-export membrane protein SecF [Burkholderia ambifaria IOP40-10] Length = 316 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF +N L+RLQ + G + AQ + V + P + Sbjct: 61 LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMTALKAQSPDVS 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ IRF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA+L ++GYSVN+ VV++DR+R+ + +S ++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERRMSVSEVINHAITTTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|162329625|ref|YP_001053764.2| preprotein translocase subunit SecD [Actinobacillus pleuropneumoniae L20] Length = 615 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 104 NLAPATPAWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + + + + + EIS Sbjct: 164 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S++ + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 213 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 273 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 331 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 332 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 392 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 452 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 511 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 512 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 571 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 572 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 614 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A T L ++ T+G +L G Sbjct: 440 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 498 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 499 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 555 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 556 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 613 >gi|120598345|ref|YP_962919.1| preprotein translocase subunit SecF [Shewanella sp. W3-18-1] gi|146293577|ref|YP_001184001.1| preprotein translocase subunit SecF [Shewanella putrefaciens CN-32] gi|120558438|gb|ABM24365.1| protein translocase subunit secF [Shewanella sp. W3-18-1] gi|145565267|gb|ABP76202.1| protein translocase subunit secF [Shewanella putrefaciens CN-32] gi|319426876|gb|ADV54950.1| protein-export membrane protein SecF [Shewanella putrefaciens 200] Length = 315 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 163/291 (56%), Gaps = 3/291 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + F+R +S + + S+ L +G+N+G+DF GG + + +PVDL+ +R Sbjct: 9 RTVNFLRHALPISILSAVLVLGSLVSLAINGINWGLDFTGGTVVEMEFTQPVDLNTLRVQ 68 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + QNF ++ LVRL + G ++ V ++ P + E V Sbjct: 69 LTTPDTEGAIVQNFGSSRDVLVRLSVKEGVKSDVQ--VKSVMDAAQKVDPQVQQKRVEFV 126 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ +EL +G + V+++ I ++IY+ RF+W A G++ L D+ TLG F+LF +E Sbjct: 127 GPQVGKELAEQGGLAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSLFQLE 186 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +A +LT++GYS+ND +VV+DR+R+N S D+++ SI +T+ R++ T+ Sbjct: 187 FDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKLRKSEP-EDIVNISITQTMSRTIITTG 245 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 246 TTLVVVVALFLKGGTMIHGFATALLMGIFVGTYSSIYVASFLAIKLGISRE 296 >gi|330874666|gb|EGH08815.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. glycinea str. race 4] Length = 303 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 159/286 (55%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R I++L + ++ F GLN+G+DF GG + + RP DL VR Sbjct: 3 RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L S + Q+F + LVR+ + Q + + ++ E V Sbjct: 63 LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AA L +IGYS+ND +VV+DR+R+N +L S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAGLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIVALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|307822492|ref|ZP_07652723.1| protein-export membrane protein SecF [Methylobacter tundripaludum SV96] gi|307736096|gb|EFO06942.1| protein-export membrane protein SecF [Methylobacter tundripaludum SV96] Length = 308 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 105/290 (36%), Positives = 170/290 (58%), Gaps = 2/290 (0%) Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 I F+ R + S + +I SI + HG GIDF GG + V +P DL+V+ Sbjct: 1 MFKKDINFIGNRNIALMFSAVLTIFSIVAIAVHGFQMGIDFTGGTLIEVGYQKPADLTVL 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R+ L++ D + QNF K+ L+RL+ Q G S + ++++ ++++ Sbjct: 61 RNTLDAEGFSDATVQNFGTTKDVLIRLKPQEGVSSVELS-SKVLEAINKNAAEPASVRRV 119 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 E VGP++ +L G + ++ S I +LIYI RF+W F++GAI + D+ TLG F++ Sbjct: 120 EFVGPQVGDDLAEDGFLALLYSTICILIYIAWRFEWKFSVGAIIATLHDVIVTLGLFSIL 179 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G+EF+LT +AAVL LIGYS+ND +VVYDR+R+N + S ++++ S+N TL R++ Sbjct: 180 GLEFDLTVLAAVLALIGYSLNDTIVVYDRIRENFRALRNK-STEEIMNISVNVTLSRTIM 238 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 TS+ + ++ + GG VI +FAI + FG+ SSIFIA+P+ L + Sbjct: 239 TSLTVLLVLVSLFFLGGEVIHNFAIVLLFGVFFGTYSSIFIASPVALLLG 288 >gi|308070369|ref|YP_003871974.1| protein-export membrane protein secF [Paenibacillus polymyxa E681] gi|305859648|gb|ADM71436.1| Protein-export membrane protein secF [Paenibacillus polymyxa E681] Length = 305 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 81/297 (27%), Positives = 155/297 (52%), Gaps = 8/297 (2%) Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + +++++ W SI+ ++ I L GLNYG+DF+ G + V + V Sbjct: 1 MRFNWNLKYIKMSKWFYTFSIIITLLGILSLSIFGLNYGVDFRSGSNVDVNLTKVVTQEQ 60 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 +++ L+ IG E+ + Q + + K + + Sbjct: 61 IQTLLDKQGIGKEVDYTPGKERFGIRFSQV------LTDQQVNDFKISFNKQLDPKASFE 114 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 V ++++EL R I ++++ +A+ +YI IRF+W FA+ AI +L+ D + F++ Sbjct: 115 VNTVDTEMAQELERNAIWAILLACVAIAVYISIRFEWRFAIAAIVSLLHDAFLVISIFSI 174 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGR 771 F +E +LT + A+LT++G+S+ND VV++DR+R+N++ + ++D SI +T+ R Sbjct: 175 FRLEVDLTFITAILTIVGFSINDTVVIFDRIRENLRFAKKKSRDDLEQVVDHSIAQTMTR 234 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S+ T FI+ L + ++GG I F++ M G++ A SSIFIA+P+ + + + Sbjct: 235 SLATVFTVFIASLCLFIFGGESIRMFSLAMVIGLLFGAYSSIFIASPLWVALKGKQK 291 >gi|56552792|ref|YP_163631.1| protein-export membrane protein SecF [Zymomonas mobilis subsp. mobilis ZM4] gi|241762470|ref|ZP_04760547.1| protein-export membrane protein SecF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753482|ref|YP_003226375.1| protein-export membrane protein SecF [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56544366|gb|AAV90520.1| protein-export membrane protein SecF [Zymomonas mobilis subsp. mobilis ZM4] gi|241372972|gb|EER62639.1| protein-export membrane protein SecF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552845|gb|ACV75791.1| protein-export membrane protein SecF [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 305 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 105/301 (34%), Positives = 183/301 (60%), Gaps = 2/301 (0%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 ++PD I+F+R R ++ + ++ S+ LL GLN G+DF GG+ + +PV+L Sbjct: 5 RIVPDNTNIRFVRLRGIAFLLTFILTLASVALLGVKGLNLGVDFVGGLMIEAHFEKPVEL 64 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 +R ++ L IG+ S Q N +RL PGD A +V+++V+ +++ P Sbjct: 65 DTLRRDINRLNIGEASLQQIGTNNNVSIRLPLPPGDESASQKVVKIVQTSLSQQFPNVHF 124 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + + V K+S EL+R GI+ V+++ ++I+ W+RF+W FA+ ++ D+ LGFF Sbjct: 125 ERVDTVSGKVSGELMRSGIIAVLLAIAGIVIFTWLRFEWQFAVSTFVSVAHDVLVILGFF 184 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 AL +EF+L VAA+LT+ GYS+NDK+V+ DR+R+N++ + + LID S+NETL R Sbjct: 185 ALTRMEFDLNIVAAILTIAGYSINDKIVIDDRIRENLRKFRK-MDLGSLIDLSVNETLPR 243 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +V TS + + + + ++GG + SF M G++V SSI++++ +L+F+ + R K A Sbjct: 244 TVMTSFSMILVLGILLIFGGDAVRSFTAAMLLGVIVGTYSSIYVSSSLLIFL-NLRPKTA 302 Query: 832 R 832 + Sbjct: 303 K 303 >gi|114566948|ref|YP_754102.1| preprotein translocase subunit SecF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337883|gb|ABI68731.1| protein translocase subunit secF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 280 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 147/287 (51%), Gaps = 8/287 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 +QF++ R + +S + + +F G GIDF+GG L + V + VRS LE Sbjct: 1 MQFIQNRKYFFILSAILITLGLISIFVQGFKLGIDFEGGSLLRFRMDAAVSSAEVRSTLE 60 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 L+ D S G ++ E V K + E VG Sbjct: 61 ELKFIDQSSIQKSGN-------EFLIRTRELNQEQTEQVNKAFAAKFKNVEYLSAESVGA 113 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 I EL R ++ V+I+ + ML+YI RF+W F + A+ L ++ LG F++F E + Sbjct: 114 TIGNELTRNAVLSVLIAMLLMLVYISFRFEWTFGVAAVVALFHNVLIVLGIFSIFQWELD 173 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 +AA+LT++GYS+ND +V++DR+R+N++L T L++KSI +T+ RSV T + Sbjct: 174 GAFIAAILTIVGYSINDTIVIFDRIRENLRL-KTRDDLTTLLNKSIMQTMNRSVNTVLTV 232 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 ++ + ++GGS I F + M G VV A SSIFIA+P+ I Sbjct: 233 LFPLVTLYLFGGSTIKIFVLTMLIGFVVGAYSSIFIASPLYYDIKQK 279 >gi|46143549|ref|ZP_00134981.2| COG0342: Preprotein translocase subunit SecD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126097331|gb|ABN74159.1| protein-export membrane protein SecD [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 604 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 93 NLAPATPAWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + + + + + EIS Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S++ + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 202 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A T L ++ T+G +L G Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 487 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602 >gi|308185880|ref|YP_003930011.1| Protein-export membrane protein secF [Pantoea vagans C9-1] gi|308056390|gb|ADO08562.1| Protein-export membrane protein secF [Pantoea vagans C9-1] Length = 322 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 161/301 (53%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L + FMR IS L + +I ++ G N+G+DF GG + + + Sbjct: 5 YNIEQLNHGRKVVDFMRWDKLAFIISGLLIVAAIAIVGVRGFNWGLDFTGGTVIEIALEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +RS L + QNF ++ +VR+ G ++V Sbjct: 65 PADLDTLRSELVKAGFDEPLVQNFGSSRDVMVRMAPVTG-PAGTELGNKVVSVINQTTQQ 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+LIYI RF+W ALG + L D+ T Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGAMALLSALIAILIYIGFRFEWRLALGTVLALAHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALF IE +LT VA+++++IGYS+NDK+VV DR+R+N + S+ D+ + S+ + Sbjct: 184 CGLLALFRIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS+ +L + ++GG+++ F++ M G+ + SSI++++ + L + R Sbjct: 243 TLSRTLITSLTTLAMILILFIFGGALLKGFSLTMLIGVTIGTISSIYVSSALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|303253357|ref|ZP_07339506.1| preprotein translocase subunit SecD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648039|gb|EFL78246.1| preprotein translocase subunit SecD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 615 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 104 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + + + + + EIS Sbjct: 164 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S++ + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 213 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 273 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 331 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 332 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 392 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 452 KGMEAGMYGLILTIAFCLIYYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVL 511 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 512 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTVLTSLVLYAVGT 571 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 572 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 614 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 83/178 (46%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A L ++ T+G +L G Sbjct: 440 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAAAALTANMVLTIGLMSLIG 498 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 499 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 555 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 556 NLTTVLTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 613 >gi|307249163|ref|ZP_07531168.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306854333|gb|EFM86531.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 604 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 93 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + + + + + EIS Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S++ + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 202 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTVLTSLVLYAVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 83/178 (46%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A L ++ T+G +L G Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAAAALTANMVLTIGLMSLIG 487 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 545 NLTTVLTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602 >gi|118444068|ref|YP_877914.1| preprotein translocase subunit SecF [Clostridium novyi NT] gi|118134524|gb|ABK61568.1| protein-export membrane protein SecF [Clostridium novyi NT] Length = 289 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 141/286 (49%), Gaps = 5/286 (1%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS+ I + L GLNYGIDFKGG + + + + + ++ Sbjct: 7 KTKIWFAISLTVIILGMVCLGVKGLNYGIDFKGGTVVTIEMGKNFNQKTKEEADKIIKKY 66 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 D + ++ + L + E+ K + + + + VGP + E Sbjct: 67 DPAASSYIANETQLEIKSNNLESNSINKMFGELKTKYKLK---DTALVSQNNVGPSVGNE 123 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L +K ++I+ IAMLIYI RF+ F + AI L+ DI TLG +A I N +A Sbjct: 124 LKKKAAGALVIATIAMLIYIGFRFEIKFGIAAILALLHDILITLGVYAFTQIPINTPFIA 183 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 +LT++GYS+ND +V++DR+R+N + + ++++ SI +T+ RS+ T + +++ Sbjct: 184 GMLTIVGYSINDTIVIFDRIRENRRKL-RGRNIIEIVNVSITQTMSRSINTVLTTLFTIV 242 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + ++ + F P+ GIV A SSIFIA+PI + + + K Sbjct: 243 SVYIF-VPSVRDFTFPLIIGIVSGAYSSIFIASPIWVLLRKFGNKK 287 >gi|312911440|dbj|BAJ35414.1| preprotein translocase subunit SecD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 604 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 166/524 (31%), Positives = 294/524 (56%), Gaps = 40/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD D + + D LRS L+++GI Sbjct: 93 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLREKGI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R+ N ++++F DS+ ++ + L + ++ + + ++ Sbjct: 153 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G + +G ++ +V ++G H+ +T++ Sbjct: 262 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + ++P V+IS D G T+DNIGKP+A + Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G A L+ +LRAG+L + IVEER +G LG +I Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A +AGLV+ +LFMI Y K+GL+A ++ N++L + ++SLL ATL++P IAGIV Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L + +AVD+N+L+NERI+EE ++V +++ G++ A+S+IFD+NIT LI ++L+ G Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 560 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 604 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I++G+ + + ++++ +K F L A + L+ ++ +G +L Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ + +V+ V++ +R+++ + + + + I++ Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 598 >gi|304395472|ref|ZP_07377355.1| protein-export membrane protein SecF [Pantoea sp. aB] gi|304356766|gb|EFM21130.1| protein-export membrane protein SecF [Pantoea sp. aB] Length = 322 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 162/301 (53%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L + FMR IS L + +I ++ G N+G+DF GG + + + Sbjct: 5 YNIEQLNHGRKVVDFMRWDKLAFIISGLLILAAIAIVGVRGFNWGLDFTGGTVIEIALEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL V+R +L + QNF ++ +VR+ G ++V Sbjct: 65 PADLEVLRGDLVKAGFDEPLVQNFGSSRDVMVRMAPVTG-PAGTELGNKVVSVINQTTQQ 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+LIYI RF+W ALG + L D+ T Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGAMALLSALIAILIYIGFRFEWRLALGTVLALAHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALF IE +LT VA+++++IGYS+NDK+VV DR+R+N + S+ D+ + S+ + Sbjct: 184 CGLLALFRIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS+ +L + V+GG+++ F++ M G+ + SSI++++ + L + R Sbjct: 243 TLSRTLITSLTTLAMILILFVFGGALLKGFSLTMLIGVTIGTISSIYVSSALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|224373500|ref|YP_002607872.1| protein-export membrane protein SecD [Nautilia profundicola AmH] gi|223588447|gb|ACM92183.1| protein-export membrane protein SecD [Nautilia profundicola AmH] Length = 518 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 164/538 (30%), Positives = 293/538 (54%), Gaps = 30/538 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + ++++ + G+ +P+F+ + +I+LGLDL+GG +LVL V Sbjct: 1 MKKLNYRLVIFILAALFGIAFTIPSFINKEP-----------KINLGLDLQGGMYLVLGV 49 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D+ V ++ + ++ K+ + + +++ N +T D + ++ Sbjct: 50 KGDEAVKSKIKTIASTIKYITDKKELFIDNLKTKDNSVTFELIDKDDAAKLDKELK---- 105 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + E I L+ I + A+ Q+++ IR R+D G++E T Sbjct: 106 -----ILKGVNIQKTPKNGSIEYKITLTPQEIIKTKDDALNQAIQTIRSRLDAFGLAEPT 160 Query: 181 IQRLGSHRILIQLPGEQDPSR---LRQLLGTTAKMSFHKVLPNNSKKGFMFGVR------ 231 + + G +IL++LPG + P ++QL+ T+A + + V + + Sbjct: 161 VTKQGKDKILVELPGIKTPKEQHSVQQLISTSAHLELYAVDEEHRALTPKDAEKYGDILL 220 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +D+ +YL++ + G + AT F KT++P + + + GA+ F + T N+G Sbjct: 221 PSKDNPDRKYLLKTPPVLDGSMITDATVGFTQKTNQPAIFFTLNSQGAQIFGDFTGKNVG 280 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K LA+V+D +V +AP I + I G QI+ + E A +LA LR+GSLP + ++E+R+ Sbjct: 281 KRLAIVVDNKVYSAPTIQERIGGGSGQIT-VGSPEEAHVLAIALRSGSLPAPVMLLEKRS 339 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VGA LG+DSI + A++ G +++V+FM YG G+VAD ++ +N+ L +A+++L GAT Sbjct: 340 VGASLGADSIRQSLIALITGFIVVVVFMAWYYGTAGIVADIALIVNLFLIIAIMALFGAT 399 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP +AGIVL +G+AVD+N+++NERIRE R+ +S+ +++ G+ A S I D+NIT L Sbjct: 400 LTLPGMAGIVLTVGMAVDANVIINERIRELIREGKSIKVAIEGGYKNAMSAILDANITTL 459 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529 IA + LF +G G ++GFAITM + I+ SM TAI + +++ K + + Sbjct: 460 IAAIALFAYGTGTIKGFAITMAIGIMASMLTAILGTHGIWEYLLASGKKITPKSFGMK 517 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 81/174 (46%), Gaps = 4/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VG + + IR+ ++ +I I +++++ + + A LI+++ + ALFG Sbjct: 339 SVGASLGADSIRQSLIALITGFIVVVVFMAWYYG-TAGIVADIALIVNLFLIIAIMALFG 397 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++ +R+R+ ++ S + I+ + + Sbjct: 398 ATLTLPGMAGIVLTVGMAVDANVIINERIRELIRE---GKSIKVAIEGGYKNAMSAILDA 454 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 ++ I+ + + +G I FAI MA GI+ + ++I I ++ K Sbjct: 455 NITTLIAAIALFAYGTGTIKGFAITMAIGIMASMLTAILGTHGIWEYLLASGKK 508 >gi|302562156|ref|ZP_07314498.1| SecD/SecF/SecDF export membrane protein [Streptomyces griseoflavus Tu4000] gi|302479774|gb|EFL42867.1| SecD/SecF/SecDF export membrane protein [Streptomyces griseoflavus Tu4000] Length = 366 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 87/356 (24%), Positives = 159/356 (44%), Gaps = 12/356 (3%) Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP----LSRF 531 +LF G V+GF +T+G+ ++ SM +A+ I R + F + + + + R Sbjct: 1 MLFVLASGPVKGFGVTLGIGVIASMISALVITRVLAEFAVARRWVHRRPRTTGLASIGRV 60 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 Q MR + +S + + + + GLN+G++F GG + + VD Sbjct: 61 RTYLTRRDPQLMRRPRRWLAVSAVVLVVAGAGIVVRGLNFGVEFTGGRLIEYSTSDAVDP 120 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 R L Q+ + V + + + Sbjct: 121 DRAREALADAGFPQAVVQSSGEN-------RLTVRTEELTNAQAVEVADAVAGVGGGAEK 173 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 E++GP + EL R ++ + ++ A L+Y+ RF+W F GA++ L D+ G F Sbjct: 174 VRDELIGPSLGDELRRNALIALGLALGAQLLYLAFRFRWMFGAGAVSALAHDVVILTGIF 233 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A G + +AA+LT+IGYSVND VVV+DR+R+ + + +++I +T+ R Sbjct: 234 AWLGKPIDGVFLAALLTVIGYSVNDSVVVFDRIRELWRKDGK-APLAQVTNRAILQTVPR 292 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 +V T + + +AV GG + FA+ + G++V SS+ A+P+ + + Sbjct: 293 TVNTGIGVIFILAALAVLGGDSLTDFALALLIGMLVGTYSSVLTASPLAVELDARS 348 Score = 40.4 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 19/47 (40%) Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + V + F + + G++ + S++ I + F R + R Sbjct: 2 LFVLASGPVKGFGVTLGIGVIASMISALVITRVLAEFAVARRWVHRR 48 >gi|238026272|ref|YP_002910503.1| preprotein translocase subunit SecD [Burkholderia glumae BGR1] gi|237875466|gb|ACR27799.1| Protein export protein SecD [Burkholderia glumae BGR1] Length = 677 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 161/516 (31%), Positives = 264/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD +N L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALNKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ GI + ++ + +FAD E + + + Sbjct: 160 ATDARTQLRDRGIRDGGVNRVDQSVVANFADQATAEQARSFLAGSITELQWATQPG---- 215 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE IQ+ G+ RI+++L Sbjct: 216 ----GGGYQVVGTFTPAVRQAVEEAALKQNLTTLHNRVNELGVSEPIIQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L+ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPVNLHPNPNDPVPPGDELFTQGNQVPVLLRKQVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHN-RPSVNIRLDSNGGRAVRTVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FM+ Y +G+V+ + +N++L +A LS++ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFVAIAVFMVAYYLLFGVVSVIGLSVNLLLLVAALSVMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRGGASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI + IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCIGILTSMFSAVFFSRGLVNLWYGGRKKLK 606 Score = 140 bits (352), Expect = 9e-31, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 89/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G+ VI +A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVHSVIWGFVAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + ++ L +AA+ +G +++ V++ +R+ Sbjct: 464 VAYY-LLFGVVSVIGLSVNLLLLVAALSVMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 523 REELRG---GASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCIG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K I Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSI 608 Score = 44.3 bits (102), Expect = 0.094, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 29/123 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IGLL LPNF ++ ++V Sbjct: 3 RYPIWKYVVMVVALAIGLLYTLPNFYGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117 ++ + LK I + + I + D+ + + D + Sbjct: 38 SGKATVKIDSSTLAQVEAALKAASITPDDITFDNSANNANIRVRLKDTDTQLRVKDLLQK 97 Query: 118 FLQ 120 L Sbjct: 98 ALN 100 >gi|121596288|ref|YP_988184.1| preprotein translocase subunit SecF [Acidovorax sp. JS42] gi|120608368|gb|ABM44108.1| protein translocase subunit secF [Acidovorax sp. JS42] Length = 317 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 159/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S + ++ L T GL+ ++F GG + V + D Sbjct: 1 MEFFRIKKDIPFMKYALVLNAVSFITFALAVFFLVTRGLHLSVEFTGGTVMEVAYTQTAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR + L D+ QNF ++ ++RL Q G + AQ E V + P T Sbjct: 61 IGKVRDTVAGLGYADVVVQNFGTSRDVMIRLPVQKGVTSAQQS--EQVLSALKAQDPEVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL+ G++ + + + ++IY+ RF+W F + A+ + D+ LGF Sbjct: 119 LRRTEFVGPQVGEELVHSGLMALGMVVLGIVIYLAFRFEWKFGVAAVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +A VL ++GYSVN+ VV++DR+R+ + + ++ ++ID +I T+ Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LNTHEVIDHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M +GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|289677972|ref|ZP_06498862.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. syringae FF5] Length = 609 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 166/539 (30%), Positives = 277/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + + LGLDL GG H +LEVD D ++ L++Y Sbjct: 90 VVALNLARTTPTWLRKLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 140 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F D +E V + Sbjct: 141 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 199 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 200 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 252 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 253 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 311 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 312 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 370 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 371 GVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 430 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + +F++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 431 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 490 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 491 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 550 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 551 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 609 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + D + ++ L G + + + Sbjct: 361 TTTYTKQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 420 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + I+I +++ F L A L Sbjct: 421 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 479 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 480 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 536 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 537 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 596 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 597 LIYGGRDFKK 606 >gi|226941676|ref|YP_002796750.1| preprotein translocase subunit SecD [Laribacter hongkongensis HLHK9] gi|226716603|gb|ACO75741.1| SecD [Laribacter hongkongensis HLHK9] Length = 605 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 175/522 (33%), Positives = 279/522 (53%), Gaps = 33/522 (6%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL + P +L + LGLDLRGG H +LEVD V+ L+ Y Sbjct: 100 IVALNLLSSSPAWLASIKAH---------PMFLGLDLRGGVHFLLEVDMKAAVDKTLERY 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++R LK + I +R+ + + + D + I D + +L Sbjct: 151 AGDIRRELKAKKIRYGQIRRTGDSLEIGARDEATLKAIEDVI-------ARQLP---NLT 200 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 L + LS+ I +V A+ Q++ + R++++G++E IQ+ G++RI++QL Sbjct: 201 LRADDNTGRLIASLSEPEIRKVQEDAVRQNITTLHNRVNELGVAEPVIQQSGANRIVVQL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS---------KKGFMFGVRFLRDSDGNQYLVE 244 PG QD ++ + +LG TA + V ++ ++ + LV+ Sbjct: 261 PGVQDTAKAKDILGRTATLEVRMVEDDSQKLSDAIAGVTPAGYELMQEMTSRGPQPILVK 320 Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR--- 301 +VE++G ++N A FD V I+ D G+ F +VT +NIG+ +A++L + Sbjct: 321 KEVELTGDNINDAQPGFDENGTPA-VHINLDSTGSSIFRQVTAENIGRRMAMILVEKGKG 379 Query: 302 -VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 V+TAPVI I G+ QISG+ A +A +LRAGSL +NI+EER VG LG+D+ Sbjct: 380 EVVTAPVIRSEIGGGRVQISGSMNAAEANDVALLLRAGSLAAPMNIIEERTVGPSLGADN 439 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G + V G + I +FM+ Y +G ++ S+ NV+ +ALLS+L ATLTLP IA I Sbjct: 440 IRMGFNSTVYGFLAIAVFMVFYYRVFGTISTLSLGANVMFLIALLSMLQATLTLPGIAAI 499 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L +G+A+D+N+L+NER+REE R ++ G+ A+ TI DSNIT LIA + L F Sbjct: 500 ALTLGMAIDANVLINERVREELRNGMPPQAAIRAGYDHAWHTILDSNITTLIAGLALLIF 559 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G G VRGFA+ L IL SMF+A+ + R ++ + ++ + Sbjct: 560 GSGPVRGFAVVHCLGILTSMFSAVMVSRGLVNLVYGSRRRLT 601 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 86/208 (41%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G A + + + I VGP + + IR G + +A+ Sbjct: 396 VQISGSMNAAEANDVALLLRAGSLAAPMNIIEERTVGPSLGADNIRMGFNSTVYGFLAIA 455 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ ++ F + +L ++ + ++ L +AA+ +G +++ V++ Sbjct: 456 VFMVFYYRV-FGTISTLSLGANVMFLIALLSMLQATLTLPGIAAIALTLGMAIDANVLIN 514 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I + + +++ I+ L + ++G + FA+ Sbjct: 515 ERVREELR---NGMPPQAAIRAGYDHAWHTILDSNITTLIAGLALLIFGSGPVRGFAVVH 571 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + S++ ++ ++ +Y R + Sbjct: 572 CLGILTSMFSAVMVSRGLVNLVYGSRRR 599 >gi|167837807|ref|ZP_02464690.1| preprotein translocase subunit SecF [Burkholderia thailandensis MSMB43] Length = 316 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 92/302 (30%), Positives = 158/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VRS L +L D QNF +N L+RL + G + AQ + V + Sbjct: 61 LEPVRSALGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMAALKAQNADVA 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ +++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|114331422|ref|YP_747644.1| preprotein translocase subunit SecD [Nitrosomonas eutropha C91] gi|114308436|gb|ABI59679.1| protein-export membrane protein SecD [Nitrosomonas eutropha C91] Length = 615 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 159/519 (30%), Positives = 290/519 (55%), Gaps = 20/519 (3%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 + N LP S ++ + + LGLDLRGG H +L+VD + L +S +LRS Sbjct: 99 YVVALNLLPNSP--QWMRHIGALPMYLGLDLRGGVHFMLQVDMAGALTKSLDRFSADLRS 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+++ I + + ++KI + F D + +E ++ D Sbjct: 157 TLREQRIPSAGIERDRSKIIIRFRDEQAREKAITELGKAF--------EDLAFQSEEVGG 208 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 E ++I + + ++ + A+++++ +R R++++G++E IQ+ G+ R+++QLPG QD Sbjct: 209 EARLTISIKPEALVRMQNTAVQRNITTLRNRVNELGVAEPIIQQAGADRVIVQLPGVQDT 268 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254 ++ + +LG TA + V G + G LV+ ++ ++G + Sbjct: 269 AKAKDILGRTATLEVRMVDEEGDIDAALRGSVPPGTELFTERGGGPLLVKKQILLTGDRI 328 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----LTAPVINQ 310 A FD H+P V ++ D G+R F ++TR+N+GK +A++L + +TAPVI + Sbjct: 329 TDAQPGFDQD-HQPAVHLTLDNNGSRIFKQLTRNNVGKRMAILLVEKNLTEVVTAPVIRE 387 Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370 I G+ QISG + A +A +LRAG+L + IVEER +G LG+++I KG + + Sbjct: 388 EIGGGRVQISGKMSSIEARDVALLLRAGALAAPMEIVEERTIGPSLGAENISKGFNSTLF 447 Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430 G + + F++ Y G+++ ++ +N++ + LLS+L ATLTLP +AG+ L +G+A+D+ Sbjct: 448 GFLAVATFIMAYYSAIGVISVVALAINLLFLIGLLSILQATLTLPGMAGMALTVGMAIDA 507 Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490 N+L+NERIR+E R S ++ G+ RA+ I D+N+T L+A + L FG G ++GFA+ Sbjct: 508 NVLINERIRDEIRHGASPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMIFGSGPIKGFAV 567 Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529 + L IL ++F+A+++ RAM+ + +K+ + I + Sbjct: 568 VLCLGILTTLFSAVTVSRAMVNLLYGNRKLARVPIGTIK 606 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 82/207 (39%), Gaps = 4/207 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + + I +GP + E I KG + +A+ Sbjct: 394 VQISGKMSSIEARDVALLLRAGALAAPMEIVEERTIGPSLGAENISKGFNSTLFGFLAVA 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +I + + ++ L +++ +G ++ L +A + +G +++ V++ Sbjct: 454 TFIMAYYS-AIGVISVVALAINLLFLIGLLSILQATLTLPGMAGMALTVGMAIDANVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R ++ S + I + T++ ++ L + ++G I FA+ + Sbjct: 513 ERIRDEIR---HGASPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMIFGSGPIKGFAVVL 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRA 828 GI+ S++ ++ ++ +Y R Sbjct: 570 CLGILTTLFSAVTVSRAMVNLLYGNRK 596 Score = 41.6 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I+ ++ +GLL LPNF +S +++ Sbjct: 3 RYPLWKYIVIAVSILLGLLYTLPNFFGESPA-------------------------VQIS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 L L ++ + I + FAD+ + D ++ + Sbjct: 38 PLRADVRTDTALLQRLEQVLNQQNLPYNGTILEATGIKIRFADTDTQIKAKDILSSEV 95 >gi|289626171|ref|ZP_06459125.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869596|gb|EGH04305.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 622 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 165/521 (31%), Positives = 274/521 (52%), Gaps = 40/521 (7%) Query: 35 FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 P+ + + + LGLDL GG H +LEVD D ++ L++Y E++S L+KE + S+ Sbjct: 112 TPTWLRHLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSL 171 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ N I L F D +E V + ++ + L+ Sbjct: 172 PQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTPAK 223 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++LG TA Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F + + R+ VE + I+G + A A+FD +P V+ Sbjct: 284 LEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVN 341 Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304 I+ D G TR N+G+ + + + + Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVNGVEKDVPVQTFKEEKKII 401 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + Q+ + +I+G + LA +LRAG L + EER +G LG+D+I KG Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 A + G++ + LF++ +Y +GL+A ++ LN+++ LAL+SLLGATLTLP IAGIVL + Sbjct: 462 IDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTM 521 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+N+T L+ +LF G G Sbjct: 522 GMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 156 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + + Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.9 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|262277202|ref|ZP_06054995.1| protein-export membrane protein SecD [alpha proteobacterium HIMB114] gi|262224305|gb|EEY74764.1| protein-export membrane protein SecD [alpha proteobacterium HIMB114] Length = 516 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 186/518 (35%), Positives = 306/518 (59%), Gaps = 10/518 (1%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + + + S+ IGL +PNFL P+ ++ LGLDL+GGS+L+LEV Sbjct: 2 LHFSRLKIFFISLTILIGLFFFIPNFLNTPS-----KIFPEKKVVLGLDLQGGSYLLLEV 56 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + + ++R ++ E I + + ++ + K I + Sbjct: 57 DSKPLFKEKIDTKAFDIRKKIRSERINYTNFKINNSQTISFQINLENKNEIEKLLNNK-- 114 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +NS++ + K L + ++I S + ++ +A+EQS+EIIR RID++G E T Sbjct: 115 DINSRV-DETNKELQFVINDNIVNINFSAAYLQRIKKNAMEQSLEIIRSRIDELGTREPT 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 I G RILI+LPG ++P R+++++GTTAK+SF + N++ S + Sbjct: 174 IIAQGEERILIELPGIKNPKRIKEIIGTTAKLSFKFLANNDANSNSF--DILDSKSRLEK 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + VE + +SG HL A FD + VV+ D GA++F T++NIG+ LA+V+D Sbjct: 232 FNVEKTLVLSGEHLTDAQPGFDNINNSSVVNFKLDNFGAKKFAYATKNNIGRRLAIVIDN 291 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +V++AP I AI +G QISG F++E A LA +LR+G+LP ++I+EER VG DLG +S Sbjct: 292 QVVSAPTIRDAITAGSGQISGGFSVEEANNLAIVLRSGALPAPMSIIEERTVGPDLGQES 351 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I KG +++ G VL+++++++ Y G+ A+ S+ +N+IL L L+L+ ATLTLP IAGI Sbjct: 352 IDKGIMSLIIGFVLVIIYILINYRILGIFANISLLVNLILLLGTLTLIEATLTLPGIAGI 411 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 +L +G+AVD+N+L+ ERI+EE +++ + D G+ R +T+ D+NIT LIA +VL+F Sbjct: 412 ILTVGMAVDANVLIYERIKEELLIEKNIMIAFDNGYKRVLTTLLDANITTLIAAIVLYFI 471 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 G G V+GFA+T+ + I+ S+FT + R + ++ K Sbjct: 472 GSGPVKGFAVTLAVGIITSLFTTFILGRLFVASYVKSK 509 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 86/181 (47%), Gaps = 5/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +I VGP + +E I KGI+ +II + ++IYI I ++ + A +L++++ L Sbjct: 335 MSIIEERTVGPDLGQESIDKGIMSLIIGFVLVIIYILINYRIL-GIFANISLLVNLILLL 393 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G L L +A ++ +G +V+ V++Y+R+++ + + + D Sbjct: 394 GTLTLIEATLTLPGIAGIILTVGMAVDANVLIYERIKEELLIEK---NIMIAFDNGYKRV 450 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L + ++ I+ + + G + FA+ +A GI+ + ++ FI + + Y Sbjct: 451 LTTLLDANITTLIAAIVLYFIGSGPVKGFAVTLAVGIITSLFTT-FILGRLFVASYVKSK 509 Query: 829 K 829 K Sbjct: 510 K 510 >gi|307245978|ref|ZP_07528060.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254956|ref|ZP_07536775.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306852913|gb|EFM85136.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862074|gb|EFM94049.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] Length = 604 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 163/523 (31%), Positives = 280/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 93 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + V++ L ++ + E + Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIR----RVHTALEAASISPTEISFSPSETGL 208 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V S AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 209 VTS-------RDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A T L ++ T+G +L G Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 487 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602 >gi|302185763|ref|ZP_07262436.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. syringae 642] Length = 622 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 167/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F D +E V + Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + LF++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 156 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + D + ++ L G + + + Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.9 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|157376024|ref|YP_001474624.1| preprotein translocase subunit SecF [Shewanella sediminis HAW-EB3] gi|157318398|gb|ABV37496.1| protein-export membrane protein SecF [Shewanella sediminis HAW-EB3] Length = 315 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 168/299 (56%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ I F+R +S++ + S+ L T+G+N+G+DF GG + + + P Sbjct: 1 MFQILSIKGTINFLRHAVPISILSLVLVLGSLTSLATNGINWGLDFTGGTVVELEFSSPS 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL +R+ L S++ QNF ++ LVRL + G A + V + P Sbjct: 61 DLEALRAELSSVETDGAVVQNFGSSRDVLVRLPVKEGV--ATDTQVSQVMDAALKFDPQV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E+VGP+I +EL +G + V+++ I +LIY+ RF+W ALG++ L D+ TLG Sbjct: 119 VQKRVEVVGPQIGKELAEQGGLAVLVALICILIYVSFRFEWRLALGSVAALAHDVIITLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L ++F+LT +A VLT++GYS+ND +VV+DR+R+N ++++ SI +T+ Sbjct: 179 VFSLLQLDFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKIRKGEP-EEIVNTSITQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T+ + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAVKLGINRE 296 >gi|238895929|ref|YP_002920665.1| aminoglycoside/multidrug efflux system [Klebsiella pneumoniae NTUH-K2044] gi|238548247|dbj|BAH64598.1| aminoglycoside efflux pump [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1037 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 81/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQMTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W + +L L ++ +G V Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVLLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ + ++ + + E F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDPQTGTSFAIIERATKAFNQINEARVIA 664 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A + ++ + P Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + + G + ++G + + PG S + Sbjct: 789 VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ + + + W + + L Sbjct: 849 LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L + G+E ++ +LT+IG S + +++ + + L Sbjct: 906 GVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 + + L + TS+A VLPMA G + + G++ A +IF Sbjct: 963 SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022 Query: 820 LLFIYDWRAKNAR 832 + + R Sbjct: 1023 FVLVRRRFPLKER 1035 >gi|239906554|ref|YP_002953295.1| protein-export membrane protein SecF [Desulfovibrio magneticus RS-1] gi|239796420|dbj|BAH75409.1| protein-export membrane protein SecF [Desulfovibrio magneticus RS-1] Length = 367 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 48/346 (13%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVDL 591 LI I F++ R +S + L G +G+DF GG+ + V + +D Sbjct: 5 LIRPGTNINFLKYRKLAYLVSAAIVLAGFISLAVKGGPRFGVDFSGGLSIQVRFAKTMDA 64 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVPLST 650 + +E + + +++ Q F E+ ++ D + R + Sbjct: 65 ERIDKAVEEVGLKNVTVQRFGNEEANEFLIRASDHDVNQEAVRTSIEAALAKNLPDSGYS 124 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF---------------------- 688 +Q E+VGPK+ +L K + + S + + IYI RF Sbjct: 125 LQRLEMVGPKVGADLRGKALEAIFYSVLLIAIYISGRFEHRWMAAGLMAAGLAGGIYVLK 184 Query: 689 ------------------------KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 + +ALGA+ + D+ T+G F+L IEF+LT VA Sbjct: 185 LVGASTVWLIVAAMAITLFLCFVMRLKYALGAVVADLHDVFITVGIFSLLNIEFDLTIVA 244 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT++GYS+ND ++VYDR+R+ ++ S+ F +I++SINETL R++ T+ I+V Sbjct: 245 ALLTILGYSLNDTIIVYDRIREKLRTTDKSVPFEQVINQSINETLSRTILTAGTTLITVT 304 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + GG VI FA+ M GI+ SS+F+A+PILL + +K Sbjct: 305 CLFFLGGPVIHDFALAMIIGILAGTFSSVFVASPILLDLGSGLSKP 350 >gi|222112517|ref|YP_002554781.1| preprotein translocase subunit SecF [Acidovorax ebreus TPSY] gi|221731961|gb|ACM34781.1| protein-export membrane protein SecF [Acidovorax ebreus TPSY] Length = 317 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 159/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S + ++ L T GL+ ++F GG + V + D Sbjct: 1 MEFFRIKKDIPFMKYALVLNAVSFITFALAVFFLVTRGLHLSVEFTGGTVMEVAYTQTAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR + L D+ QNF ++ +VRL Q G + AQ E V + P T Sbjct: 61 IGKVRDTVAGLGYADVVVQNFGTSRDVMVRLPVQKGVTSAQQS--EQVLSALKAQDPEVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL+ G++ + + + ++IY+ RF+W F + A+ + D+ LGF Sbjct: 119 LRRTEFVGPQVGEELVHGGLMALGMVVLGIVIYLAFRFEWKFGVAAVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +A VL ++GYSVN+ VV++DR+R+ + + ++ ++ID +I T+ Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LNTHEVIDHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M +GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|254236725|ref|ZP_04930048.1| secretion protein SecD [Pseudomonas aeruginosa C3719] gi|126168656|gb|EAZ54167.1| secretion protein SecD [Pseudomonas aeruginosa C3719] Length = 620 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 166/526 (31%), Positives = 280/526 (53%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + + LGLDL GG H +LEVD D V+ L++Y E++S L+KE + Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ I L F DS + +T + D + + + + Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLITKDFR--------DFEVVPEERNGLQVLRVA 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G+SE +QR G++RI+++LPG QD + +++L Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F ++ K F +E V I+G + A+A+FD Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299 +P V+I D G TR+N+G+ + + Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+IV+Y +G++A ++ N+++ +AL+S+LGATLTLP IAG Sbjct: 455 NIAKGIDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE SV ++ GF+RA++ I D+N+T+L+ +L+ Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I+ SMFTAI + RAM+ I + K + I Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI 620 Score = 155 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 92/250 (36%), Gaps = 5/250 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I + +++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIYRF-FGVIATVALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ + ++ G L +A ++ +G +V+ V+++ R+R+ + +S + I Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820 + N + ++ + + + G + FA+ M+ GI+ + ++I + ++ Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVN 607 Query: 821 LFIYDWRAKN 830 L K Sbjct: 608 LIFGGRDFKK 617 >gi|330807630|ref|YP_004352092.1| Sec protein secretion system, subunit SecF [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375738|gb|AEA67088.1| Putative Sec protein secretion system, subunit SecF [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 304 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 159/286 (55%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R G+++ ++ ++ F GLNYG+DF GG + + RP D++ VR Sbjct: 3 RTINFMGVRNVAFGVTLFLTVLALFSWFHKGLNYGLDFTGGTLIELTYERPADVTKVREQ 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + D Q+F + LVR+ Q + ++ E V Sbjct: 63 LVTSGYSDAIVQSFGATTDLLVRMPGADPQLGHQVAEALQ----KAGGDNPAQVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +L+Y+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLMALGGILLYLAFRFQWKFAVGAIVSLIHDVIVTVGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ASLIENINISTTQTLLRTMATSI 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIAALLFFGGDNLFGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|172059695|ref|YP_001807347.1| preprotein translocase subunit SecF [Burkholderia ambifaria MC40-6] gi|171992212|gb|ACB63131.1| protein-export membrane protein SecF [Burkholderia ambifaria MC40-6] Length = 316 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF +N L+RLQ + G + AQ + V + P + Sbjct: 61 LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMTALKAQSPDVS 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ IRF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA+L ++GYSVN+ VV++DR+R+ + +S ++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERRMSVSEVINHAITTTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|332531379|ref|ZP_08407284.1| AcrB protein [Hylemonella gracilis ATCC 19624] gi|332039163|gb|EGI75584.1| AcrB protein [Hylemonella gracilis ATCC 19624] Length = 1046 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 74/685 (10%), Positives = 183/685 (26%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I G L + ++P P + + Sbjct: 8 RPIFAWVLAIVIMLAGGLAI-----RSLPVSQYPQIAPP---------QVSINATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + I L+FA + +V LQ Sbjct: 54 AKTLEDTVTQVIEQKMKGIDGLTYITSTSDSTGSASIALTFAAGTDPDIAQVQVQNKLQV 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T +++ + + S + +D + E Sbjct: 114 AMPLLPQEVQRQGVQVTKSTINFLMVLGFVSEDGSMDQTDLSDYVSSNIVDALSRVEGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP++L Q T A++ N G R Sbjct: 174 EVQLFGAQ-YAMRVWLDPNKLNQYNLTPAEVVAAIQAQNAQVSAGQIGAAPARVGQQINA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + + I Sbjct: 233 TITAQTRL-------------QTPAQFEAILVKSQADGAHVRLRDVARIEMGAESYATVS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 A + T + L ++ S Sbjct: 280 RHNGKPAAGVAIKLAAGANALSTAKAVEAALKDLEKFMPQGMKAVIAYDTTPFVEVSIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T ++++ G ++ ++ G+V Sbjct: 340 VIKTLIEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVMAVAGFSINTLTMFGLV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKSMGQISGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++++S+ A+ + A+ + R + + Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVLVAMVLTPALCATMLKPVDASHHAPRTGFFAWFNRSF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + + + LF + + + +G + V Sbjct: 520 DNATGRYQGFVERMVGKRGRSMLVYGALFVGMCVLFMRLPSSFLPEEDQGILFTMVQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ ++ + + + E F V G +K P Sbjct: 580 NATQERTLKVVDRVEQHFLQTEKDNVESVFSVAGFSFAGRGENMAIAFVRLKDWSERPSP 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + +Q + + Sbjct: 640 MQKVQAIAGRAMGNFMQYRDARVFA 664 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 88/236 (37%), Gaps = 6/236 (2%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V L V + ++ + ++++ + +E K + + +P Sbjct: 259 HVRLRDVARIEMGAESYATVSRHNGKPAAGVAIKLAAGANALSTAKAVEAALKDLEKFMP 318 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706 I + I +I + + + +++ + + L + + + Sbjct: 319 QGMKAVIAYDTTPFVEVSIHEVIKTLIEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLG 378 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T G A+ G N + ++ IG V+D +VV + + + +S ++ KS+ Sbjct: 379 TFGVMAVAGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKSMG 436 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + +V++ ++ + + Sbjct: 437 QISGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVLVAMVLTPAL 492 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 82/250 (32%), Gaps = 13/250 (5%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + ++ A + V S S + + N + Sbjct: 776 NFRMQPEDLNTWRVKNSAGQMVPFSSFGSARWEMGSPRLERYNGLPAIEIAGQAAPGKSS 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A V E+ K + T + + + + S + + + + Sbjct: 836 GAAMQAVEEIAAKLPPGVGLAWTGLSYQERLSGSQAP----ALYAL--SLLVVFLCLAAL 889 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W + + + L + L +L G+ ++ +LT IG + +++ + ++ Sbjct: 890 YESWSVPVAVMLVVPLGVIGALLAASLRGLSNDVYFQVGLLTTIGLGAKNAILIVEFAKE 949 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803 M + + +++ L + TS+A + VLP+A+ G + + Sbjct: 950 QM---EHGKTLINATLEAVRMRLRPILMTSLAFALGVLPLALASGAGAGSQNAIGTGVLG 1006 Query: 804 GIVVAASSSI 813 G+V A I Sbjct: 1007 GVVAATVLGI 1016 >gi|304407544|ref|ZP_07389196.1| protein-export membrane protein SecF [Paenibacillus curdlanolyticus YK9] gi|304343495|gb|EFM09337.1| protein-export membrane protein SecF [Paenibacillus curdlanolyticus YK9] Length = 310 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 84/306 (27%), Positives = 149/306 (48%), Gaps = 6/306 (1%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + I F++ + G S+ + I L GLNYG+DFK G + + + Sbjct: 1 MHYNDKFHTNIRFDFIKHQKKFFGASLALVVLGIVSLLVFGLNYGVDFKAGTNMDIEIGK 60 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V + L +L D++ L D V + + + + + Sbjct: 61 AVTQEQAKELLGTLGYKDLAPTVGGASNQRLSVR----FDEVLEQPKVTEILNALKKQYG 116 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +V P ++REL K I VII+++A++IY+ IRF+W FAL A ++ D Sbjct: 117 DQVSAEVNVVSPDMARELGVKTIYAVIIASVAIMIYVAIRFEWRFALAANIAILYDAFVV 176 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSI 765 + F++F +E +L +AAVLT IGYS+NDK+V++DR+R+N++ ++++ S+ Sbjct: 177 VALFSIFRLEVDLPFIAAVLTTIGYSINDKIVIFDRIRENLRFSKTKNKEQLAEMVNASL 236 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 +T+ R+VYT + I + + ++G I FA+ G+ A SS+ IA+P+ L + Sbjct: 237 WQTMARNVYTVLTVLIVAISLYLFGSESIKLFALAKIIGLTSGAYSSVCIASPLWLMLRG 296 Query: 826 WRAKNA 831 + Sbjct: 297 KQKPKQ 302 >gi|296113228|ref|YP_003627166.1| protein translocase subunit SecD [Moraxella catarrhalis RH4] gi|295920922|gb|ADG61273.1| protein translocase subunit SecD [Moraxella catarrhalis RH4] Length = 625 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 159/526 (30%), Positives = 265/526 (50%), Gaps = 41/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG VLEVD + L S ++R L+ E I Sbjct: 103 NLAQTTPEWLRNLGAAPMKLGLDLRGGVRFVLEVDMAKALEQRLATASQDVRRTLRGEQI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 V S+R N + L+F ++ + + + + T + + Sbjct: 163 PVQSLRITDNGMVLTFINTDDRGRAQSILQNQVGADFALRP-------FADTEGAALELT 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + I ++ +A+ Q++ +R RI+++G++E+ +Q G++RI+++LPG QD + +++L Sbjct: 216 YTDAKIQEINEYAVGQNLTTLRNRINELGVAEALVQSQGTNRIVVELPGVQDTAEAKRVL 275 Query: 207 GTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V ++ DG L+E + I+G + + Sbjct: 276 GRTANLEFRMVSEHDMNYAGGIPPAGTEAFAFGSLDGQPMLLERQAIITGERV-QGAQSG 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296 + +P V+I+ D G R TR +GK + Sbjct: 335 LDENGRPQVNITLDTAGGRLMQNATRTAVGKQMAVLFIENKQKVSFQEDSSTGELVEVRT 394 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + QA+ I+G + AG LA +LR+G+L + VEER +G L Sbjct: 395 PYTESRIINRATIQAVLGSSFVITGLDSDAEAGELALLLRSGALAAPMYFVEERTIGPSL 454 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G D+I KG + G +L+ L+MIV Y +G++A+ ++ NVI+ +A++S+LG++LTLP Sbjct: 455 GQDNIDKGLFSTQVGYLLVFLWMIVFYRAFGVIANIALAFNVIIMVAIMSILGSSLTLPG 514 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL IG+AVD+N+L+ ERIREE ++ GF RA+S+IFD+NIT L+ + Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREELANGTRAKSAIVAGFDRAFSSIFDANITTLLIAFI 574 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 LF G G ++GFAIT+ + I+ S+FTAI + RAM+ ++K + Sbjct: 575 LFAIGTGPIKGFAITLAIGIISSLFTAILVTRAMIQIWYGHRKNLT 620 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 82/206 (39%), Gaps = 4/206 (1%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + +GP + ++ I KG+ + + + +++ + Sbjct: 421 DSDAEAGELALLLRSGALAAPMYFVEERTIGPSLGQDNIDKGLFSTQVGYLLVFLWMIVF 480 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F + A L ++ + ++ G L +A ++ IG +V+ V++++R+R+ Sbjct: 481 YR-AFGVIANIALAFNVIIMVAIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREE 539 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + T + S I + ++ + + G I FAI +A GI+ Sbjct: 540 LANGTRAKS---AIVAGFDRAFSSIFDANITTLLIAFILFAIGTGPIKGFAITLAIGIIS 596 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + ++I + ++ Y R ++ Sbjct: 597 SLFTAILVTRAMIQIWYGHRKNLTKL 622 >gi|257487217|ref|ZP_05641258.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320322939|gb|EFW79029.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. glycinea str. B076] gi|320329938|gb|EFW85926.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. glycinea str. race 4] gi|330984996|gb|EGH83099.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009168|gb|EGH89224.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 622 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 167/539 (30%), Positives = 277/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F+D +E V + Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFSDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + LF++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + + Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.9 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W IL + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|291613430|ref|YP_003523587.1| protein-export membrane protein SecF [Sideroxydans lithotrophicus ES-1] gi|291583542|gb|ADE11200.1| protein-export membrane protein SecF [Sideroxydans lithotrophicus ES-1] Length = 310 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 92/302 (30%), Positives = 162/302 (53%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM + IS++ + ++ L T GLN+G+DF GG + V + D Sbjct: 1 MEFFRIKKDIPFMSYGRYTTAISLVTFLFAVFFLATKGLNFGVDFTGGTVMEVHYAQSAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR + S+ + D QNF K+ L+++ + + A ++ + V + + Sbjct: 61 LDKVRGQVGSIGLNDALVQNFGSSKDVLIQIPLKE--NKAGAKLSDQVMDTLHQQDASVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ ++L+ G + +++ ++ ++ Y+WIRF+W F L AI + D+ LGF Sbjct: 119 LRRVEFVGPQVGKDLVDNGAMALLLVSLGIVGYLWIRFEWKFGLAAIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VVV+DR+R+N + + +ID +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVVFDRIRENFRKMRKTE-VAVIIDNAITRTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T I V M GG + FA+ + GI+ + SS+ +A+P+L+ R Sbjct: 238 RTIITHGCTQIMVTSMLFLGGETLHYFALALTIGILFSIYSSVLVASPLLMMFGVSREDF 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|315638283|ref|ZP_07893464.1| protein-export membrane protein SecF [Campylobacter upsaliensis JV21] gi|315481630|gb|EFU72253.1| protein-export membrane protein SecF [Campylobacter upsaliensis JV21] Length = 332 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 151/285 (52%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM+ RF + +S++ SI LLF GL +GIDF GG + + + +R L Sbjct: 19 YDFMKMRFAAISLSLILFFGSIFLLFERGLQFGIDFSGGTLVQLRYENAAPIPQIREILS 78 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 G + G + + + ++ ++VGP Sbjct: 79 QSGQFQNLSVTEFGSAEEITIRFL--GSNENLGDDTGAYISSLLKDTGKFELRRVDVVGP 136 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ ++IS +A+LIYI RF+W FA+ AI + I D+ TLG LF I+ N Sbjct: 137 KVGDELRNKGLMAIVISLVAILIYIAFRFEWRFAIAAIISEIHDVVITLGAICLFKIDVN 196 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AA+LT++GYS+ND ++++DR+R +K + +I++S++ TL R++ TS Sbjct: 197 LDTLAAILTVLGYSLNDTIIIFDRIRDGIKT-SKKNELAPIINESVSATLSRTILTSGLT 255 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +V+ + +GGS+I F++ + G+V SSIF+A+P L++ Sbjct: 256 IATVVILYFFGGSMIEGFSLALLVGLVAGTLSSIFVASPTLMWFK 300 >gi|57241992|ref|ZP_00369932.1| protein-export membrane protein, SecD/SecF family [Campylobacter upsaliensis RM3195] gi|57017184|gb|EAL53965.1| protein-export membrane protein, SecD/SecF family [Campylobacter upsaliensis RM3195] Length = 323 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 153/285 (53%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM+ RF + +S + SI LLF GL +GIDF GG + + +S +R L Sbjct: 10 YDFMKMRFAAISLSFILFFGSIFLLFEKGLQFGIDFSGGTLVQLRYENAAPISQIREILS 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + G + G + + + ++ ++VGP Sbjct: 70 QSEQFQNLSVTEFGSAKEITIRFL--GSNENLGDDTGAYISSLLKNTGKFELRRVDVVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ ++IS +A+LIYI RF+W FA+ AI + I D+ TLG LF I+ N Sbjct: 128 KVGDELRNKGLMAIVISLVAILIYIAFRFEWRFAIAAIISEIHDVVITLGAICLFKIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AA+LT++GYS+ND ++++DR+R +K + +I++S++ TL R++ TS Sbjct: 188 LDTLAAILTVLGYSLNDTIIIFDRIRDGIKT-SKKNELAPIINESVSATLSRTILTSGLT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 ++V+ + +GGS+I F++ + G+V SSIF+A+P L++ Sbjct: 247 IVTVVILYFFGGSMIEGFSLALLVGLVAGTLSSIFVASPTLMWFK 291 >gi|330013590|ref|ZP_08307678.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3] gi|328533469|gb|EGF60202.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3] Length = 1037 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 81/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQMTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W + +L L ++ +G V Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ + ++ + + E F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDPQTGTSFAIIERATKAFNQINEARVIA 664 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A + ++ + P Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + + G + ++G + + PG S + Sbjct: 789 VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ + + + W + + L Sbjct: 849 LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L + G+E ++ +LT+IG S + +++ + + L Sbjct: 906 GVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 + + L + TS+A VLPMA G + + G++ A +IF Sbjct: 963 SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022 Query: 820 LLFIYDWRAKNAR 832 + + R Sbjct: 1023 FVLVRRRFPLKER 1035 >gi|251793027|ref|YP_003007753.1| preprotein translocase subunit SecD [Aggregatibacter aphrophilus NJ8700] gi|247534420|gb|ACS97666.1| protein-export membrane protein SecD [Aggregatibacter aphrophilus NJ8700] Length = 616 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 282/523 (53%), Gaps = 37/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + ++ + D LR+ L++E Sbjct: 104 NLAPATPAWLSSIGGNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRREKY 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +++ +N L V L + + ++ +S+ Sbjct: 164 QYTAIKSAEN-------FGTTITLARP---EQLSDVQRYLRRQHQNLEVKAISDNTLSLG 213 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+++LPG QD +R +++L Sbjct: 214 LSDVALNEARESAIEQNLSILRKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEIL 273 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V N + + G+ D + ++ + + G H+ A++ Sbjct: 274 GATATLEFRLVNGNVNLEAAARGMVTSDSEVKYDRNNRPIVLYKRAVLGGEHITNASSGV 333 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP--------------- 306 D T +P V ++ D G + TR NI KP+A + + Sbjct: 334 DQNTSRPQVSVTLDSEGGEIMSQTTRANIQKPMATLYVEYKDSGKKDENGKTILQKHEEV 393 Query: 307 ---VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q + QI+G + A LA +LR+G+L + IVEER +G LG+ ++ + Sbjct: 394 INVATIQGRFGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVEQ 453 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A GL+++V FM++ Y K+GL+A+ ++ N++L + L+SLL ATLT+P IAGIVL Sbjct: 454 GLQASFWGLMIVVAFMVIYYRKFGLIANVALIANIVLLVGLMSLLPGATLTMPGIAGIVL 513 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R + V +++ G+S A+S+IFD+N+T ++ V L+ G Sbjct: 514 AVGMSVDANVLIFERIKEEIRNGRPVQQAINEGYSGAFSSIFDANLTTILTAVALYAVGT 573 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G ++GFAIT+ L I ISMFTAI+ RA++ F+ K++ + I Sbjct: 574 GPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKRIDKLSI 616 Score = 149 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 81/174 (46%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +G+ + ++ ++ I ++ F L A LI +I +G +L Sbjct: 441 TIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYR-KFGLIANVALIANIVLLVGLMSLLP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ +G SV+ V++++R+++ ++ + I++ + Sbjct: 500 GATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIR---NGRPVQQAINEGYSGAFSSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ ++ + + G I FAI ++ GI ++ ++I I+ F+Y + Sbjct: 557 ANLTTILTAVALYAVGTGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKR 610 Score = 42.8 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG+L ALPN + + S + G Sbjct: 4 RYPLWKNLMVIFLVAIGILYALPNLYGEDPAVQI-SGTRGQEANSG-------------- 48 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 E+++ LK + S+ I + F ++ + DK+T L Sbjct: 49 -----------VLSEVQTVLKDNNLATKSIVLENGSILVRFNNTDVQLLAKDKITEKL 95 >gi|257486452|ref|ZP_05640493.1| multidrug/solvent tranporter [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1003 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ + F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + V+ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 56.2 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 76/224 (33%), Gaps = 10/224 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + V S S + +S N + L Sbjct: 778 RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGE 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 L+ S D ++ L + TSMA + V+P+A+ G+ Sbjct: 950 -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGA 992 >gi|53720480|ref|YP_109466.1| preprotein translocase subunit SecF [Burkholderia pseudomallei K96243] gi|76811120|ref|YP_334745.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 1710b] gi|126455336|ref|YP_001067602.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 1106a] gi|134280202|ref|ZP_01766913.1| protein-export membrane protein SecF [Burkholderia pseudomallei 305] gi|167721142|ref|ZP_02404378.1| preprotein translocase subunit SecF [Burkholderia pseudomallei DM98] gi|167740114|ref|ZP_02412888.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 14] gi|167817325|ref|ZP_02449005.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 91] gi|167825735|ref|ZP_02457206.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 9] gi|167847220|ref|ZP_02472728.1| preprotein translocase subunit SecF [Burkholderia pseudomallei B7210] gi|167895808|ref|ZP_02483210.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 7894] gi|167904197|ref|ZP_02491402.1| preprotein translocase subunit SecF [Burkholderia pseudomallei NCTC 13177] gi|167912454|ref|ZP_02499545.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 112] gi|167920409|ref|ZP_02507500.1| preprotein translocase subunit SecF [Burkholderia pseudomallei BCC215] gi|217420444|ref|ZP_03451949.1| protein-export membrane protein SecF [Burkholderia pseudomallei 576] gi|226198408|ref|ZP_03793977.1| protein-export membrane protein SecF [Burkholderia pseudomallei Pakistan 9] gi|237813730|ref|YP_002898181.1| protein-export membrane protein SecF [Burkholderia pseudomallei MSHR346] gi|242315899|ref|ZP_04814915.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1106b] gi|254180717|ref|ZP_04887315.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1655] gi|254194969|ref|ZP_04901399.1| protein-export membrane protein SecF [Burkholderia pseudomallei S13] gi|254258479|ref|ZP_04949533.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1710a] gi|52210894|emb|CAH36882.1| putative protein-export membrane protein [Burkholderia pseudomallei K96243] gi|76580573|gb|ABA50048.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1710b] gi|126228978|gb|ABN92518.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1106a] gi|134248209|gb|EBA48292.1| protein-export membrane protein SecF [Burkholderia pseudomallei 305] gi|169651718|gb|EDS84411.1| protein-export membrane protein SecF [Burkholderia pseudomallei S13] gi|184211256|gb|EDU08299.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1655] gi|217395856|gb|EEC35873.1| protein-export membrane protein SecF [Burkholderia pseudomallei 576] gi|225929591|gb|EEH25609.1| protein-export membrane protein SecF [Burkholderia pseudomallei Pakistan 9] gi|237505134|gb|ACQ97452.1| protein-export membrane protein SecF [Burkholderia pseudomallei MSHR346] gi|242139138|gb|EES25540.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1106b] gi|254217168|gb|EET06552.1| protein-export membrane protein SecF [Burkholderia pseudomallei 1710a] Length = 316 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 158/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR +S++ + ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L +L D QNF +N L+RL + G + AQ + V + Sbjct: 61 LEPVRATLGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMAALKAQNADVA 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ +++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|152987443|ref|YP_001346676.1| preprotein translocase subunit SecD [Pseudomonas aeruginosa PA7] gi|150962601|gb|ABR84626.1| protein-export membrane protein SecD [Pseudomonas aeruginosa PA7] Length = 620 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 166/526 (31%), Positives = 279/526 (53%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + + LGLDL GG H +LEVD D V+ L++Y E++S L+KE + Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ I L F DS + + + D + + + + Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFR--------DFEVVPEERNGLQVLRVA 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G+SE +QR G++RI+++LPG QD + +++L Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F ++ K F +E V I+G + A+A+FD Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299 +P V+I D G TR+N+G+ + + Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G+V + LF+IV+Y +G++A ++ N+++ +AL+S+LGATLTLP IAG Sbjct: 455 NIAKGIDASLWGMVFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE SV ++ GF+RA++ I D+N+T+L+ +L+ Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I+ SMFTAI + RAM+ I + K + I Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAILVTRAMVNLIFGGRDFKKLWI 620 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I + +++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGIDASLWGMVFVSLFIIVIYRF-FGVIATVALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ + ++ G L +A ++ +G +V+ V+++ R+R+ + +S + I Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + N + ++ + + + G + FA+ M+ GI+ + ++I + ++ Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAILVTRAMVN 607 Query: 822 FIYDWRAKNA 831 I+ R Sbjct: 608 LIFGGRDFKK 617 >gi|271499570|ref|YP_003332595.1| protein-export membrane protein SecD [Dickeya dadantii Ech586] gi|270343125|gb|ACZ75890.1| protein-export membrane protein SecD [Dickeya dadantii Ech586] Length = 604 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 174/537 (32%), Positives = 289/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 89 VVALNLAPATPTWLRMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 D LRS L+++GI S+R+ N + + F D + ++N + L + Sbjct: 140 MDSLRSDLREKGIQYASVRKADNYGVEILFRDGQLRDNAVN-----------YLTPRHRD 188 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + + V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++ Sbjct: 189 LVFNNSGSDALRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVE 248 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V N G DG + +V Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDPAALASGRVPGDTEVMNMRDGGPIALYKRV 308 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T+ + + ++P V+IS D G T+DNIGKP+A + + Sbjct: 309 ILTGDHITDSTS-GNDEYNRPQVNISLDSAGGNMMSNFTKDNIGKPMATLFVEYKDSGKK 367 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 368 DANGRAILEKQEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEE 427 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G LG +I +G A +AGL + +LFMI Y K+GL+A ++ LN++L + ++SLL Sbjct: 428 RTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYKKFGLIATSALLLNLVLVVGIMSLLP 487 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE +SV ++D G+ A+S+IFD+N+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANV 547 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT G+ + SMFTAI RA++ + K++K + I Sbjct: 548 TTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 604 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 76/177 (42%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ +K F L A + L+L++ +G +L Sbjct: 429 TIGPTLGMQNITQGLEACLAGLAVSILFMIFFYK-KFGLIATSALLLNLVLVVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + S + ID+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYRGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + Sbjct: 545 ANVTTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKK 601 >gi|261377972|ref|ZP_05982545.1| protein-export membrane protein SecF [Neisseria cinerea ATCC 14685] gi|269145836|gb|EEZ72254.1| protein-export membrane protein SecF [Neisseria cinerea ATCC 14685] Length = 311 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + VD Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ R L++L++GD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKTRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDNPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKSHMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSREN 298 Query: 830 NAR 832 + Sbjct: 299 IGK 301 >gi|15640762|ref|NP_230392.1| preprotein translocase subunit SecD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591448|ref|ZP_01678724.1| protein-export membrane protein SecD [Vibrio cholerae 2740-80] gi|153818848|ref|ZP_01971515.1| protein-export membrane protein SecD [Vibrio cholerae NCTC 8457] gi|153822712|ref|ZP_01975379.1| protein-export membrane protein SecD [Vibrio cholerae B33] gi|227080922|ref|YP_002809473.1| protein-export membrane protein SecD [Vibrio cholerae M66-2] gi|229505643|ref|ZP_04395153.1| protein-export membrane protein SecD [Vibrio cholerae BX 330286] gi|229510685|ref|ZP_04400164.1| protein-export membrane protein SecD [Vibrio cholerae B33] gi|229517807|ref|ZP_04407251.1| protein-export membrane protein SecD [Vibrio cholerae RC9] gi|229608661|ref|YP_002879309.1| preprotein translocase subunit SecD [Vibrio cholerae MJ-1236] gi|254847880|ref|ZP_05237230.1| protein-export membrane protein SecD [Vibrio cholerae MO10] gi|298499124|ref|ZP_07008931.1| protein-export membrane protein SecD [Vibrio cholerae MAK 757] gi|9655188|gb|AAF93908.1| protein-export membrane protein SecD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546699|gb|EAX56878.1| protein-export membrane protein SecD [Vibrio cholerae 2740-80] gi|126510630|gb|EAZ73224.1| protein-export membrane protein SecD [Vibrio cholerae NCTC 8457] gi|126519743|gb|EAZ76966.1| protein-export membrane protein SecD [Vibrio cholerae B33] gi|227008810|gb|ACP05022.1| protein-export membrane protein SecD [Vibrio cholerae M66-2] gi|229344522|gb|EEO09496.1| protein-export membrane protein SecD [Vibrio cholerae RC9] gi|229350650|gb|EEO15591.1| protein-export membrane protein SecD [Vibrio cholerae B33] gi|229357866|gb|EEO22783.1| protein-export membrane protein SecD [Vibrio cholerae BX 330286] gi|229371316|gb|ACQ61739.1| protein-export membrane protein SecD [Vibrio cholerae MJ-1236] gi|254843585|gb|EET21999.1| protein-export membrane protein SecD [Vibrio cholerae MO10] gi|297543457|gb|EFH79507.1| protein-export membrane protein SecD [Vibrio cholerae MAK 757] Length = 617 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 104 NLAPSTPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D + + Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 606 Query: 824 YDWRAKNA 831 Y + N Sbjct: 607 YGGKRINK 614 Score = 39.7 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + + L ALPN + + A RG S VD Sbjct: 4 RYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + L K + S+ I + F D+ + + D ++ L Sbjct: 47 M---------STLDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDIISEAL 95 >gi|330969087|gb|EGH69153.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. aceris str. M302273PT] Length = 622 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 166/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F D +E V + Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVD 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + +F++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + D + ++ L G + + + Sbjct: 374 TTTYTKQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + I+I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.9 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|253997304|ref|YP_003049368.1| preprotein translocase subunit SecF [Methylotenera mobilis JLW8] gi|253983983|gb|ACT48841.1| protein-export membrane protein SecF [Methylotenera mobilis JLW8] Length = 321 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 166/297 (55%), Gaps = 3/297 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM IS++ + +I L T GLN+G+DF GG + V D Sbjct: 1 MEFFRVKHDIPFMSYGRLTTAISMITFVLAIVFLATRGLNFGVDFTGGTMIEVNYPHAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ +R+ ++S+ + D + QNF ++ L+RL + G + AQ + + V + + Sbjct: 61 LTKIRTTIDSIGLKDATVQNFGTSRDVLIRLPVRTGLTGAQ--LSDKVLGSLHAVDSSVR 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + E VGP++ EL KG + +++ ++IY+ +RF+W FA+ A+ + D+ LGF Sbjct: 119 MSRIEFVGPQVGTELYEKGSLALLLVIAGIVIYLAMRFEWRFAVAAVIANMHDVIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EFNLT +AAVL ++GYSVN+ VVV+DR+R+N + S +ID +I T+ Sbjct: 179 FAFFQWEFNLTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRK-ASVTQVIDNAITRTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 R++ T + + VL M ++GG V+ +FA+ + GI+ SS+ +A PI +++ R Sbjct: 238 RTIITHFSTQLMVLSMLLFGGEVLHNFALALTIGILFGIYSSVLVACPIAMWLGVNR 294 >gi|326560222|gb|EGE10610.1| preprotein translocase subunit SecD [Moraxella catarrhalis 7169] gi|326562866|gb|EGE13153.1| preprotein translocase subunit SecD [Moraxella catarrhalis 46P47B1] gi|326563692|gb|EGE13944.1| preprotein translocase subunit SecD [Moraxella catarrhalis 103P14B1] gi|326565229|gb|EGE15414.1| preprotein translocase subunit SecD [Moraxella catarrhalis 12P80B1] gi|326566460|gb|EGE16610.1| preprotein translocase subunit SecD [Moraxella catarrhalis BC1] gi|326570268|gb|EGE20313.1| preprotein translocase subunit SecD [Moraxella catarrhalis BC8] gi|326571004|gb|EGE21028.1| preprotein translocase subunit SecD [Moraxella catarrhalis BC7] gi|326573302|gb|EGE23270.1| preprotein translocase subunit SecD [Moraxella catarrhalis 101P30B1] gi|326575801|gb|EGE25724.1| preprotein translocase subunit SecD [Moraxella catarrhalis CO72] gi|326576881|gb|EGE26787.1| preprotein translocase subunit SecD [Moraxella catarrhalis O35E] Length = 625 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 159/526 (30%), Positives = 265/526 (50%), Gaps = 41/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG VLEVD + L S ++R L+ E I Sbjct: 103 NLAQTTPEWLRNLGAAPMKLGLDLRGGVRFVLEVDMAKALEQRLATASQDVRRTLRGEQI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 V S+R N + L+F ++ + + + + T + + Sbjct: 163 PVQSLRITDNGMVLTFINTDDRGRAQSILQNQVGADFALRP-------FADTEGAALELT 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + I ++ +A+ Q++ +R RI+++G++E+ +Q G++RI+++LPG QD + +++L Sbjct: 216 YTDAKIQEINEYAVGQNLTTLRNRINELGVAEALVQSQGTNRIVVELPGVQDTAEAKRVL 275 Query: 207 GTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V ++ DG L+E + I+G + + Sbjct: 276 GRTANLEFRMVSEHDMNYAGGIPPAGTEAFAFGSLDGQPMLLERQTIITGERV-QGAQSG 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296 + +P V+I+ D G R TR +GK + Sbjct: 335 LDENGRPQVNITLDTAGGRLMQNATRTAVGKQMAVLFIENKQKVSFQEDSSTGELVEVRT 394 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + QA+ I+G + AG LA +LR+G+L + VEER +G L Sbjct: 395 PYTESRIINRATIQAVLGSSFVITGLDSDAEAGELALLLRSGALAAPMYFVEERTIGPSL 454 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G D+I KG + G +L+ L+MIV Y +G++A+ ++ NVI+ +A++S+LG++LTLP Sbjct: 455 GQDNIDKGLFSTQVGYLLVFLWMIVFYRAFGVIANIALAFNVIIMVAIMSILGSSLTLPG 514 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL IG+AVD+N+L+ ERIREE ++ GF RA+S+IFD+NIT L+ + Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREELANGTRAKSAIVAGFDRAFSSIFDANITTLLIAFI 574 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 LF G G ++GFAIT+ + I+ S+FTAI + RAM+ ++K + Sbjct: 575 LFAIGTGPIKGFAITLAIGIISSLFTAILVTRAMIQIWYGHRKNLT 620 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 82/206 (39%), Gaps = 4/206 (1%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + +GP + ++ I KG+ + + + +++ + Sbjct: 421 DSDAEAGELALLLRSGALAAPMYFVEERTIGPSLGQDNIDKGLFSTQVGYLLVFLWMIVF 480 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F + A L ++ + ++ G L +A ++ IG +V+ V++++R+R+ Sbjct: 481 YR-AFGVIANIALAFNVIIMVAIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREE 539 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + T + S I + ++ + + G I FAI +A GI+ Sbjct: 540 LANGTRAKS---AIVAGFDRAFSSIFDANITTLLIAFILFAIGTGPIKGFAITLAIGIIS 596 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + ++I + ++ Y R ++ Sbjct: 597 SLFTAILVTRAMIQIWYGHRKNLTKL 622 >gi|330981512|gb|EGH79615.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1044 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 70/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ + F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGKPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + D G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPDEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + V+ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + A V S S S +S N + L Sbjct: 778 RMTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSSGD 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMNEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + + + Sbjct: 1009 ITAVILAIFWVPLFFVTVSGLFKSKQK 1035 >gi|227327501|ref|ZP_03831525.1| preprotein translocase subunit SecD [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 604 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 166/538 (30%), Positives = 288/538 (53%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 88 FVVALNLAPATPTWLRLLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 138 Query: 73 YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+++ I S+R+I N + + F D++ +++ + +T + + Sbjct: 139 TMDSLRSDLREKNIPYASVRKIDNYGVEIRFRDAQTRDDGLNYLTTRHRNL--------- 189 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 +L ++ + V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI++ Sbjct: 190 --VLSSSGSNLLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 247 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V N G DG+ ++ + Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNSNADATAAANGRVPGDSEVKNMRDGSPVVLFKR 307 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T++ D +P V+IS D G T+D+IGK +A + + Sbjct: 308 VILTGDHITDSTSSTDEYN-QPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGK 366 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 Q+ +I+G A L+ +LRAG+L + IVE Sbjct: 367 KDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 426 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A + GL+ +LFM+ Y K+G++A ++ N++L + ++SLL Sbjct: 427 ERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIVGVMSLL 486 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE +SV ++ G+ A+S+I D+N Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIHEGYKGAFSSIVDAN 546 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T LI ++L+ G G+++GFAIT + I SMFTAI RA++ + K++ + I Sbjct: 547 VTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + S+ N ++ L G + + Sbjct: 358 FVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ +K F + A + L+ ++ Sbjct: 418 LIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK-KFGVIATSALVANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ + + S + I + Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIHE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 V ++ I V+ + G I FAI A GI + ++I I+ + Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLL 593 Query: 824 YDWRAKNA 831 Y + N Sbjct: 594 YGGKRINK 601 >gi|160871927|ref|ZP_02062059.1| protein-export membrane protein SecF [Rickettsiella grylli] gi|159120726|gb|EDP46064.1| protein-export membrane protein SecF [Rickettsiella grylli] Length = 303 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 171/298 (57%), Gaps = 7/298 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I F+ R W VG+S+L + S L T GL +G+DF GG QL V N D Sbjct: 1 MEFFKKQTHINFLGLRSWAVGLSLLLMMISAGALLTKGLRWGLDFTGGSQLQVSFNHTAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + ++R L + DI Q++ ++ ++ L Q + + I + +P + Sbjct: 61 IPLLRKQLVAAGFKDILVQSYGTSRDVVISLA------AHQQMTQQDLSAHIIKALPGAQ 114 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ +EL +G + V I+ + ++IYI +RF++ FA+GA LI D LG Sbjct: 115 LKQIEYIGPQVGKELATQGALAVFIALLGIMIYIALRFEYRFAMGAAVALIHDPIVILGM 174 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F+LF IEFNLTA+AA+L +IGYS+ND +V++DR+R+N + + D+++ SIN+TL Sbjct: 175 FSLFNIEFNLTALAAILAVIGYSLNDTIVIFDRIRENFRRLRKG-TAVDVVNLSINQTLS 233 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS + VL + + GG++I SFA+ + GIVV SSI++A I + + R Sbjct: 234 RTIMTSATTLLVVLSLCLLGGTMIHSFALALIIGIVVGTYSSIYVAGSIAVALGLDRR 291 >gi|158333882|ref|YP_001515054.1| preprotein translocase subunit SecF [Acaryochloris marina MBIC11017] gi|158304123|gb|ABW25740.1| protein-export membrane protein SecF [Acaryochloris marina MBIC11017] Length = 319 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 83/302 (27%), Positives = 161/302 (53%), Gaps = 22/302 (7%) Query: 546 RFWGVGISILFSICSICLLFTHGLNY------GIDFKGGIQLGVLAN--------RPVDL 591 R IS + + + Y G+DF GG +L + + P+ + Sbjct: 9 RGLWWTISAALILAGVISMALSWNQYQAPLKPGLDFTGGTRLQLERDCSKPDNCKTPIQI 68 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + VR L+ ++ + + Q G+ V ++ + + +T++ E + K+ ++ Sbjct: 69 AEVRQILDEQKLAESNVQVI-GQNAQGVAIRTKDLNQEERTKLTEALTAKLGQLDVE--K 125 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + VGP + ++L+ G++ +I+S A+++Y+ +RF++ +AL AI L D+ T+GFF Sbjct: 126 SQIDTVGPTLGKQLLASGLLALIVSFAAIIVYVSVRFQFDYALFAIVALFHDVLVTMGFF 185 Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 ++ G+ E N + +LT+IG+SVND VV+YDR+R+N+K S + +D ++N+ Sbjct: 186 SILGLTRGVEVNSLFIVGLLTIIGFSVNDTVVIYDRVRENLKYGAKR-SISETVDIAVNQ 244 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TLGRS+ TS+ + ++ + ++GG + FA+ + G A SSIFIA+ +L + + Sbjct: 245 TLGRSINTSLTTGLPLIGIYIFGGETLKDFALTLIVGFAAGAYSSIFIASTLLAWWRQRQ 304 Query: 828 AK 829 + Sbjct: 305 ER 306 >gi|126439004|ref|YP_001060342.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 668] gi|126218497|gb|ABN82003.1| protein-export membrane protein SecF [Burkholderia pseudomallei 668] Length = 316 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 158/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR +S++ + ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L +L D QNF +N L+RL + G + AQ + V + Sbjct: 61 LEPVRATLGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMAALKAQHADVA 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ +++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|332285322|ref|YP_004417233.1| preprotein translocase subunit SecD [Pusillimonas sp. T7-7] gi|330429275|gb|AEC20609.1| preprotein translocase subunit SecD [Pusillimonas sp. T7-7] Length = 624 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 176/511 (34%), Positives = 287/511 (56%), Gaps = 19/511 (3%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 N LP S + +A+ + LGLDLRGG H +L+VD + G + ++R+ Sbjct: 108 FTVALNLLPSSP--NWLTALGARPMYLGLDLRGGVHFLLQVDMQGALTGRYDSLASDVRN 165 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L++ I ++ + + SF + ++N A ++ + N Sbjct: 166 TLREANIESGNVERADMSVVASFGSADARDNAASELR-------RSMPDMVFANSGENGG 218 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + ++ L++ + QV S+A+ Q+M + RI+++G++E IQ+ G+ RI++QLPG QD Sbjct: 219 QFLLTGRLTETAVTQVQSYALRQNMTTLHNRINELGVAEPIIQQQGADRIVVQLPGVQDV 278 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVEISGIH 253 ++ + +LG TA + V + S FG+ D DG L+ +V ++G + Sbjct: 279 AKAKDILGRTATLEIRMVDDSPSAMAALAAGTVPFGLERYTDRDGRPLLLRRQVILTGEN 338 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVIN 309 L A D ++ +P V+++ D G+R F +VTR+NI K + G V+TAPVI Sbjct: 339 LQDAQPGRDQQSQQPSVNLTLDSKGSRIFRDVTRNNINKRMAIVLFEQGHGEVVTAPVIR 398 Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369 IP G+ QISG+ T + A A +LRAG+L + I+EER +G LG+D+I +G + + Sbjct: 399 SEIPGGQVQISGSMTAQEAADTALLLRAGALAAPMEIIEERTIGPSLGADNIRQGFDSTL 458 Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429 G + I +F+++ Y G+ + + NV+L LA+LS+L ATLTLP IA I L +G+A+D Sbjct: 459 YGFIAIAIFIMLYYHLMGMFSTIGLAFNVLLLLAVLSMLQATLTLPGIAAIALTLGMAID 518 Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 +N+L+NERIREE R S ++ +GF RA++TIFDSN+T+LI V L FG G +RGFA Sbjct: 519 ANVLINERIREELRNGASPQQAIHLGFDRAWATIFDSNLTSLIVGVALLAFGSGPIRGFA 578 Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 + + IL SMF+++ VR ++ K+ Sbjct: 579 VVHCIGILTSMFSSVVGVRGLVNLWYGNKRR 609 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 82/209 (39%), Gaps = 4/209 (1%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 G AQ + + + I +GP + + IR+G + IA+ Sbjct: 405 QVQISGSMTAQEAADTALLLRAGALAAPMEIIEERTIGPSLGADNIRQGFDSTLYGFIAI 464 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 I+I + + + + L ++ L ++ L +AA+ +G +++ V++ Sbjct: 465 AIFIMLYYHL-MGMFSTIGLAFNVLLLLAVLSMLQATLTLPGIAAIALTLGMAIDANVLI 523 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 +R+R+ ++ S + I + +++ + I + + +G I FA+ Sbjct: 524 NERIREELR---NGASPQQAIHLGFDRAWATIFDSNLTSLIVGVALLAFGSGPIRGFAVV 580 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829 GI+ + SS+ ++ Y + + Sbjct: 581 HCIGILTSMFSSVVGVRGLVNLWYGNKRR 609 >gi|119945871|ref|YP_943551.1| preprotein translocase subunit SecF [Psychromonas ingrahamii 37] gi|119864475|gb|ABM03952.1| protein translocase subunit secF [Psychromonas ingrahamii 37] Length = 314 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 166/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F LI + FM+ S+ + S+ L + LN+G+DF GG + V +P Sbjct: 1 MFELIKSKKTLPFMQYSKPASWFSMFLIVASVAALSINWLNWGLDFTGGTVIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 L VR L S D Q+F ++ ++RL + G + ++++ Sbjct: 61 VLPDVRDVLASNDFSDAVVQHFGTSRDVMIRLAPREG-VRGEVIGTQVLESLQNADFGQV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +II+ I +LIY+ IRF+W A G++ L DI TLG Sbjct: 120 DMRRIEFVGPNVGAELANSGGLAIIIALICILIYVSIRFEWRLACGSVLALAHDIIITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 FF+LF IE +LT +AA+L ++GYS+ND +VV+DR+R+N +L T+ + D++DKS+ +TL Sbjct: 180 FFSLFKIEVDLTVLAALLAVVGYSLNDTIVVFDRIRENFRLL-TTATSNDIVDKSLTQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS ++ + ++GG++I FA + G++V SSI++A+ + + + R Sbjct: 239 SRTLITSGTTIFVLISLFIFGGALIHGFATALLIGVIVGTYSSIYVASALAIKLGISRE 297 >gi|51102955|gb|AAT96103.1| SecD [Pseudomonas viridiflava] Length = 622 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 163/521 (31%), Positives = 270/521 (51%), Gaps = 40/521 (7%) Query: 35 FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 P+ + + LGLDL GG H +LEVD D ++ L++Y E+++ L+KE + S+ Sbjct: 112 TPNWLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKTLLRKEKVRYRSL 171 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ N I L F D +E V + ++ + L+ Sbjct: 172 PQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTPAK 223 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++LG TA Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F + R+ VE + I+G + A A+FD +P V+ Sbjct: 284 LEFRLGA-GPEDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVN 341 Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304 I+ D G TR N+G+ + + + + Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVNGVEKDVPVQTFKEDKKII 401 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + Q+ + +I+G + LA +LRAG L + EER +G LG+D+I KG Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 A + G++ + LF++ +Y +GL+A ++ N+++ LAL+SLLGATLTLP IAGIVL + Sbjct: 462 VDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTM 521 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ RIREE +V ++ GF RAY+ I D+N+T L+ +LF G G Sbjct: 522 GMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 91/250 (36%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + D + ++ L G + + + Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KG+ + + + ++I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 FNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 SEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 41.6 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVT-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALTDA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|50120061|ref|YP_049228.1| preprotein translocase subunit SecD [Pectobacterium atrosepticum SCRI1043] gi|49610587|emb|CAG74032.1| protein-export membrane protei [Pectobacterium atrosepticum SCRI1043] Length = 615 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 162/538 (30%), Positives = 287/538 (53%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 99 FVVALNLAPATPTWLR---------VLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 149 Query: 73 YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+++ I ++R++ N + + F D++ +++ + +T + + Sbjct: 150 TMDSLRSDLREKNIPYAAVRKVDNYGVEIRFRDAQTRDDGLNYLTSRHRNL--------- 200 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 +L ++ + +S + + +A++Q++ I+R R++Q+G++E +QR G+ RI++ Sbjct: 201 --VLSSSGSNLLRAAMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 258 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V + G DG+ ++ + Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNSDADATAAANGRVPGDSEVKNMRDGSPVVLFKR 318 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T++ D +P V+IS D G T+D+IGK +A + + Sbjct: 319 VILTGDHITDSTSSNDEYN-RPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGK 377 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 Q+ +I+G A L+ +LRAG+L + IVE Sbjct: 378 KDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 437 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A + GL+ +LFM+ Y K+G++A ++ N++L + ++SLL Sbjct: 438 ERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIVGVMSLL 497 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE +SV ++ G+ A+S+I D+N Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIHEGYKGAFSSIVDAN 557 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T LI ++L+ G G+++GFAIT + I SMFTAI RA++ + K++ + I Sbjct: 558 VTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI 615 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + S+ N ++ L G + + Sbjct: 369 FVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 428 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ +K F + A + L+ ++ Sbjct: 429 LIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK-KFGVIATSALVANL 487 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ + + S + I + Sbjct: 488 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIHE 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 V ++ I V+ + G I FAI A GI + ++I I+ + Sbjct: 545 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLL 604 Query: 824 YDWRAKNA 831 Y + N Sbjct: 605 YGGKRINK 612 >gi|330807629|ref|YP_004352091.1| Sec protein secretion system, subunit SecD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375737|gb|AEA67087.1| Putative Sec protein secretion system, subunit SecD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 622 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 158/526 (30%), Positives = 276/526 (52%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + + LGLDL GG H +LEVD + ++ L++Y +++S L+KE + Sbjct: 107 NLAQTTPQWLRKLGAHPMKLGLDLSGGVHFLLEVDMEKALDARLKVYEGDVKSLLRKERV 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q+ I L F+D+ +E + + D ++ + Sbjct: 167 RYRSLPQLDGAIQLGFSDTDTREQARSLIRKNFND-FDVVPADLNGQPVLR-------LA 218 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 219 MTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRIL 278 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F R+ + +E + I+G + A A FD + Sbjct: 279 GKTANLEFRLAAEP-GASKATSESFEFREGNRPAAQIERGLIITGDQVTDAKAGFDEQG- 336 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299 +P V+I D G TR N+G+ + + Sbjct: 337 RPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPTTTYTKQVVNGVEKDVAVQTFKE 396 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 397 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 456 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+I +Y +G++A ++ +N+++ LAL+SLLGATLTLP IAG Sbjct: 457 NITKGIDASLWGMLFVSLFIIAIYRFFGIIATVALAVNMVMLLALMSLLGATLTLPGIAG 516 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE ++ +++ GF RA++ I D+N+T L+ +LF Sbjct: 517 IVLTMGMAVDANVLIFSRIREEIAAGMTIQRAINEGFGRAFTAILDANLTTLLVGGILFA 576 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 577 MGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 622 Score = 155 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 92/250 (36%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V V + + + ++ L G + + + Sbjct: 374 TTTYTKQVVNGVEKDVAVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I +++ F + A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRF-FGIIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 +++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 VNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMTIQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 I+ R Sbjct: 610 LIFGGRDFKK 619 Score = 44.3 bits (102), Expect = 0.095, Method: Composition-based stats. Identities = 40/389 (10%), Positives = 94/389 (24%), Gaps = 34/389 (8%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +GL+ + PN P + G+ L+V Sbjct: 4 KYPLWKYVLILAVLAVGLIYSAPNLYPDDPAIQV----------------SGASTALQVT 47 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 + D + + + + S+ + L A + + D V L Sbjct: 48 QADLDRASAALKASNIE-------VKAASIAENGKGGLLRLAKAEDQLPAKDVVRKALGD 100 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174 LN+ + + + + + A++ +++ + + Sbjct: 101 DYVVALNLAQTTPQWLRKLGAHPMKLGLDLSGGVHFLLEVDMEKALDARLKVYEGDVKSL 160 Query: 175 GISESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231 E R I + + R L+ N + + Sbjct: 161 LRKERVRYRSLPQLDGAIQLGFSDTDTREQARSLIRKNFNDFDVVPADLNGQPVLRLAMT 220 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + ++ +Y ++ + +N + I + G + E R Sbjct: 221 PAKLAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGK 280 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 A + IE I+ + + Sbjct: 281 TANLEFRLAAEPGASKATSESFEFREGNRPAAQIERGLIITGDQVTDAKAGFDEQGRPQV 340 Query: 352 VGADLGSDSIYKGTCA-IVAGLVLIVLFM 379 G G + V+F+ Sbjct: 341 NIRLDGHGGELMSRATRSNVGRSMAVIFI 369 >gi|114320564|ref|YP_742247.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226958|gb|ABI56757.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Alkalilimnicola ehrlichii MLHE-1] Length = 1058 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 86/687 (12%), Positives = 187/687 (27%), Gaps = 46/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I GL L ++++P +P +V++ Sbjct: 8 RPIFASVISIIILVAGLAS-----LRALPIEQYPDVVPPE-------------IVVQAAY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + + L + + +I++SF + V Sbjct: 50 PGASSEVLAEAVAAPLEQEINGVDDMIYMESTSTDAGTVQISVSFEMGTDPDQAEINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q +L + + ++++ + +E S + ID++ Sbjct: 110 RVQAALPRLPQAVRDQGVRVEARSTNILLVATLSSPDGRHGTLELSNYALLNIIDELERL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + P +L Q T A+++ N G D Sbjct: 170 PGVGEASLFGQQDYAMRIWLRPDKLAQYDLTPAEVAAAIREQNAQFAAGQMGAEPAPDGQ 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + ++ G + I + Sbjct: 230 AFTLTVTTRGQLEGAE-------------EFEAIILRSDESGATLRLGDVARAELGAQSY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T E A + Sbjct: 277 AFSATYNGEPTVPIGVYQAPGANALETAEQVRAALADSAERFPEGVEYTIPYDTTEFVEV 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T I GLV++V F+ + + + L+ +I +++I T A + +G ++ L ++ Sbjct: 337 SIREVYTTLLIAVGLVVLVTFVFLQHLRATLIPITAIPVSLIGTFAGMQAMGFSVNLLTL 396 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD+ I+V E + K + + + S + + Sbjct: 397 FGLVLAIGIVVDNAIIVMENVERLMREKGLKAREASVETMKQVSGAVVSSTLVLVAVFAP 456 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSR 530 + F G G R FA+T+ S++IS A+++ AM + + Sbjct: 457 VAFLGGLTGELYRQFAVTIAFSVVISGVVALTLTPAMCALLLDKQPKTPWLPFRLFNAGF 516 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANR 587 L +A R VG+ + + + G+ + +G + Sbjct: 517 EHLTRAFVAAVGFLVRNRTVGVGLFALAVGGAVFLVERMPDGLVPQEDQGFALVVAQLPP 576 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 L+ + ++L + F P Sbjct: 577 TSALNRTEAVRDALAAQLTQLEEIQEFTAFAGFDIIAGSLRTNAAVGFVNFTDWADRPRP 636 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 + L + I Sbjct: 637 DQHAAAMSERISGMGFGLQEANVFAFI 663 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V Q S + Q +++ + E P Sbjct: 265 DVARAELGAQSYAFSATYNGEPTVPIGVYQAPGANALETAEQVRAALADSAERFPEGVEY 324 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + IR+ ++I+ +++ ++ + L IT + + + T Sbjct: 325 TIPYDTTEFVEVSIREVYTTLLIAVGLVVLVTFVFLQHLRATLIPITAIPVSLIGTFAGM 384 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 G NL + ++ IG V++ ++V + + + + R+ +++ + G Sbjct: 385 QAMGFSVNLLTLFGLVLAIGIVVDNAIIVMENV--ERLMREKGLKAREASVETMKQVSGA 442 Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V +++ P+A G G + FA+ +AF +V++ ++ + + + D + Sbjct: 443 VVSSTLVLVAVFAPVAFLGGLTGELYRQFAVTIAFSVVISGVVALTLTPAMCALLLDKQP 502 Query: 829 K 829 K Sbjct: 503 K 503 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 677 AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 + + + + ++ +W L T + + F L G ++ +L LIG + Sbjct: 880 LLMVFLILAAQYERWTLPLAVATAVPFAVLGAALFALLRGFPNDIYFQVGLLVLIGLAAK 939 Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792 + +++ + +N T ++ + + + + T++ I LP+ G + Sbjct: 940 NAILIVEFAAQNRA---TGMTSTEAAMAAARQRFRAIMMTALTFIIGTLPLVFATGAGAA 996 Query: 793 VIGSFAIPMAFGIV-VAASSSIFIAAPILLFIYD-----WRAKNAR 832 + G++ + + +F+ P+ + + + AR Sbjct: 997 SRQEIGTVVVGGMLAASTLALLFV--PLFYKLLEDVATWRNERRAR 1040 >gi|71737435|ref|YP_273560.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557988|gb|AAZ37199.1| protein-export membrane protein SecD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 622 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 167/539 (30%), Positives = 277/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F+D +E V + Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFSDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + LF++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + + Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 44.7 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W IL + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + + D V L Sbjct: 51 VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLSAKDVVRKAL 98 >gi|83814389|ref|YP_445941.1| preprotein translocase subunit SecF [Salinibacter ruber DSM 13855] gi|294507852|ref|YP_003571910.1| protein-export membrane protein [Salinibacter ruber M8] gi|83755783|gb|ABC43896.1| protein-export membrane protein SecF [Salinibacter ruber DSM 13855] gi|294344180|emb|CBH24958.1| Protein-export membrane protein [Salinibacter ruber M8] Length = 303 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 159/293 (54%), Gaps = 10/293 (3%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 R G IS SI L T GL GIDF+GG++ V ++ VRS L Sbjct: 14 NRRIGYIISGTLLAISILSLLTKGLALGIDFRGGMEFVVGNTTDLNTVDVRSALTESFEE 73 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 + + F + + + ++ V + I++T +VGP+ + + Sbjct: 74 EPEVKRFGDVGHLVRISKKGDITTMENQVVSAL---NAQFSGRDIAIESTNVVGPRFAED 130 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL------FGIEF 718 L R I V+ + + + +YI +RF+W ++LGA+ L+ D+T TLG F++ F ++ Sbjct: 131 LKRGAIYAVLGALLVVFLYIMVRFEWRYSLGAVAALVHDVTITLGIFSVLAGIAPFSVQI 190 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 + + +AA LT++GYS+ND VVV+DR+R+ + L+ + +F +++++SIN TL R+V TS+ Sbjct: 191 DQSLIAAFLTIVGYSLNDTVVVFDRVREYVNLF-KTEAFDEIVNRSINATLSRTVVTSLT 249 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 I V + V+GG V+ F+ + G+V+ SSIF+A+P ++ + K+A Sbjct: 250 TLIVVTILFVFGGEVLRGFSFALIVGVVIGTYSSIFVASPTIVELNRRLEKSA 302 >gi|71065835|ref|YP_264562.1| preprotein translocase subunit SecF [Psychrobacter arcticus 273-4] gi|71038820|gb|AAZ19128.1| protein translocase subunit secF [Psychrobacter arcticus 273-4] Length = 414 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 148/288 (51%), Gaps = 4/288 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I FM+ +SI+ I SI + +GLN G+DF GG+ V + V+ V + L Sbjct: 104 IPFMKIEKPMGILSIILVIGSIIAIAVNGLNLGLDFTGGVSADVRYEQSVEQGDVVNALA 163 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 D Q + L+RL Q S + + + + I N I+G Sbjct: 164 DNGFDDAVVQYLGTSQELLIRLPPQ---SDNIDGLNTSLSEALALPNNNVEISNVNIIGS 220 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ E+ ++ ++++ ML Y+ +RF++ ALGA+ +L D T+G FALFG F+ Sbjct: 221 QVGNEVYLSSVMSIVLALACMLGYVALRFQFKLALGAVLSLFHDAIVTIGVFALFGFPFD 280 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AA+L LIGYS+ND +VVYDR+R+N + IS R ID S+ ETL R++ T Sbjct: 281 LTVLAAILALIGYSLNDTIVVYDRIRENFRR-VRGISPRQTIDLSLTETLRRTIMTISTV 339 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + VL M GG + F+ + G++ SS +IA+ I L + R Sbjct: 340 LLVVLAMLFLGGDGLFWFSAALFIGLLAGTYSSTYIASSIPLAMGLSR 387 >gi|227113438|ref|ZP_03827094.1| preprotein translocase subunit SecD [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 604 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 166/538 (30%), Positives = 287/538 (53%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 88 FVVALNLAPATPTWLRLLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 138 Query: 73 YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+++ I S+R+I N + + F D++ ++ + +T + + Sbjct: 139 TMDSLRSDLREKNIPYASVRKIDNYGVEIRFRDAQTRDEGINYLTTRHRNL--------- 189 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 +L ++ + V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI++ Sbjct: 190 --VLSSSGSNLLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 247 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V N G DG+ ++ + Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNSNADATAAANGRVPGDSEVKNMRDGSPVVLFKR 307 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T++ D +P V+IS D G T+D+IGK +A + + Sbjct: 308 VILTGDHITDSTSSTDEYN-QPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGK 366 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 Q+ +I+G A L+ +LRAG+L + IVE Sbjct: 367 KDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 426 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A + GL+ +LFM+ Y K+G++A ++ N++L + ++SLL Sbjct: 427 ERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIVGVMSLL 486 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE +SV ++ G+ A+S+I D+N Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIHEGYKGAFSSIVDAN 546 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T LI ++L+ G G+++GFAIT + I SMFTAI RA++ + K++ + I Sbjct: 547 VTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + S+ N ++ L G + + Sbjct: 358 FVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ +K F + A + L+ ++ Sbjct: 418 LIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK-KFGVIATSALVANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ + + S + I + Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIHE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 V ++ I V+ + G I FAI A GI + ++I I+ + Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLL 593 Query: 824 YDWRAKNA 831 Y + N Sbjct: 594 YGGKRINK 601 >gi|167912452|ref|ZP_02499543.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 112] Length = 624 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|167920407|ref|ZP_02507498.1| preprotein translocase subunit SecD [Burkholderia pseudomallei BCC215] Length = 622 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|167740112|ref|ZP_02412886.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 14] Length = 622 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|303230221|ref|ZP_07316989.1| export membrane protein SecF [Veillonella atypica ACS-134-V-Col7a] gi|303231810|ref|ZP_07318526.1| export membrane protein SecF [Veillonella atypica ACS-049-V-Sch6] gi|302513517|gb|EFL55543.1| export membrane protein SecF [Veillonella atypica ACS-049-V-Sch6] gi|302515147|gb|EFL57121.1| export membrane protein SecF [Veillonella atypica ACS-134-V-Col7a] Length = 296 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 82/295 (27%), Positives = 154/295 (52%), Gaps = 1/295 (0%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 ++ +R W IS + I S+ +FT G N+GID+ GG + V +PV++S VR Sbjct: 1 MSFNVIRHHRWWFVISSILVIISLISIFTKGFNFGIDYTGGTIVEVQFTKPVEVSQVRDV 60 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L++ + + Q G+ + V +K+ + +T++ E V Sbjct: 61 LKTFDLENAQIQ-LSGDTAETAGEDVMIRTRNLEPSESAAVVEKLNSDIGENTVKRIETV 119 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 G I E+ + ++ ++I+ + +YI RF++ A+ A+T + D+ LG F+ F +E Sbjct: 120 GAVIGSEVTQHALLNLVIAFAVLALYISYRFEYRIAVSALTAIFHDLIMVLGVFSFFQLE 179 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 + + +AA+LT++GYS+N+ VV++DR+R+N + + +F DL + SI +++ RS+YT Sbjct: 180 IDASFLAAILTVVGYSMNESVVIFDRVRENAHTHKRTDTFEDLANASIAQSIHRSIYTLA 239 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + + V+GG +FA+ M G A SSI +A + + + + R Sbjct: 240 TVMFACVSLFVFGGDTTKNFALCMIIGFASGAYSSICVATSLWVLWKNRNKNDIR 294 >gi|289649078|ref|ZP_06480421.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. aesculi str. 2250] Length = 622 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 166/521 (31%), Positives = 275/521 (52%), Gaps = 40/521 (7%) Query: 35 FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 P+ + + + LGLDL GG H +LEVD D ++ L++Y E++S L+KE + S+ Sbjct: 112 TPTWLRHLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSL 171 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ N I L F D +E V + ++ + L+Q Sbjct: 172 PQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTQAK 223 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++LG TA Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F + + R+ VE + I+G + A A+FD +P V+ Sbjct: 284 LEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVN 341 Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304 I+ D G TR N+G+ + + + + Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVNGVEKDVPVQTFKEEKKII 401 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + Q+ + +I+G + LA +LRAG L + EER +G LG+D+I KG Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 A + G++ + LF++ +Y +GL+A ++ LN+++ LAL+SLLGATLTLP IAGIVL + Sbjct: 462 IDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTM 521 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+N+T L+ +LF G G Sbjct: 522 GMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 156 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + + Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.9 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|119505403|ref|ZP_01627477.1| protein export protein SecD [marine gamma proteobacterium HTCC2080] gi|119458858|gb|EAW39959.1| protein export protein SecD [marine gamma proteobacterium HTCC2080] Length = 633 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 171/526 (32%), Positives = 274/526 (52%), Gaps = 38/526 (7%) Query: 30 SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDL GG H LEVD L+ Y ++ L++ I Sbjct: 107 NLAPTTPEWLKRGGAQPMKLGLDLSGGVHFKLEVDVAAAKERRLETYESGIKRGLREARI 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R +I +SF V + + + L + + + + E+ Sbjct: 167 RGL-VRLQGQRIGMSFLSEA--------VREDARKITADLYPELLLDRVDGVDKWELFAE 217 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + +V+ +A++Q++ IR R++++G+SE +Q+ GS+RI+++LPG QD + +++L Sbjct: 218 VTDATMKEVVDYAVDQNLTTIRNRVNELGVSEPLVQKQGSNRIVVELPGIQDTAEAKRIL 277 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRD-SDGNQYLVEDKVEISGIHLNGATANFDPKT 265 G A + F V N+ + D +G +E ++ I+G ++ A A FD Sbjct: 278 GKVANLEFRLVAETNAPVTERQRFEYRSDAREGMTEWLERELIITGERVSNAAAGFDQNN 337 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301 +P V I+ D G TR NI + + V D + Sbjct: 338 -QPNVSITLDGEGGMLMSRATRSNIKRRMGVLFIERKYRTRYEQDENGEEVVVRVPYDEK 396 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + Q+ QI+G + A LA MLRAG+L + VEER VG LG+++I Sbjct: 397 KLLTAPVIQSALGASFQITGLDSPGEASELALMLRAGALAAPITFVEERTVGPSLGAENI 456 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 G ++ GL L+V+FMI+ Y +G+ A ++ N++L LA +SLLGATLTLP IAGIV Sbjct: 457 ALGVKSVQIGLALVVIFMILYYRVFGIAAVVALTTNLVLLLAFMSLLGATLTLPGIAGIV 516 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ RIREE + S ++D GF RA +TI D+NIT LI V+L+ G Sbjct: 517 LTVGMAVDANVLIFARIREELARRMSPQMAIDAGFERAVATILDANITTLIVAVILYAVG 576 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 G ++GFA+T+ L IL SMFTAI RA++ I +++ S+ I P Sbjct: 577 TGPIKGFAVTLSLGILTSMFTAILGTRALVNLIYGGRRVDSLSIGP 622 Score = 155 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 5/277 (1%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 SI L+ + G + + + + D Sbjct: 342 SITLDGEGGMLMSRATRSNIKRRMGVLFIERKYRTRYEQDENGEEVVVRVPYDEKKLLTA 401 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + +Q + E + + + T VGP + E I G+ Sbjct: 402 PVIQSALGASFQITGLDSPGEASELALMLRAGALAAPITFVEERTVGPSLGAENIALGVK 461 Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731 V I ++I++ + ++ F + A+ L ++ L F +L G L +A ++ +G Sbjct: 462 SVQIGLALVVIFMILYYRV-FGIAAVVALTTNLVLLLAFMSLLGATLTLPGIAGIVLTVG 520 Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791 +V+ V+++ R+R+ + +S + ID + + ++ I + + G Sbjct: 521 MAVDANVLIFARIREELA---RRMSPQMAIDAGFERAVATILDANITTLIVAVILYAVGT 577 Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 I FA+ ++ GI+ + ++I ++ IY R Sbjct: 578 GPIKGFAVTLSLGILTSMFTAILGTRALVNLIYGGRR 614 >gi|161525836|ref|YP_001580848.1| preprotein translocase subunit SecF [Burkholderia multivorans ATCC 17616] gi|189349443|ref|YP_001945071.1| preprotein translocase subunit SecF [Burkholderia multivorans ATCC 17616] gi|221202266|ref|ZP_03575300.1| protein-export membrane protein SecF [Burkholderia multivorans CGD2M] gi|221209144|ref|ZP_03582137.1| protein-export membrane protein SecF [Burkholderia multivorans CGD2] gi|221214470|ref|ZP_03587441.1| protein-export membrane protein SecF [Burkholderia multivorans CGD1] gi|160343265|gb|ABX16351.1| protein-export membrane protein SecF [Burkholderia multivorans ATCC 17616] gi|189333465|dbj|BAG42535.1| preprotein translocase SecF subunit [Burkholderia multivorans ATCC 17616] gi|221165727|gb|EED98202.1| protein-export membrane protein SecF [Burkholderia multivorans CGD1] gi|221170962|gb|EEE03416.1| protein-export membrane protein SecF [Burkholderia multivorans CGD2] gi|221177840|gb|EEE10253.1| protein-export membrane protein SecF [Burkholderia multivorans CGD2M] Length = 316 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 95/306 (31%), Positives = 161/306 (52%), Gaps = 6/306 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L L D QNF +N L+RLQ + G + AQ + V + P T Sbjct: 61 LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMTALKAQSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ IRF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA+L ++GYSVN+ VV++DR+R+ + ++ ++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMTVPEVINHAITTTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA-- 828 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 829 -KNARI 833 K ++ Sbjct: 298 IKEKKV 303 >gi|313109239|ref|ZP_07795207.1| protein-export membrane protein SecD [Pseudomonas aeruginosa 39016] gi|310881709|gb|EFQ40303.1| protein-export membrane protein SecD [Pseudomonas aeruginosa 39016] Length = 620 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 165/526 (31%), Positives = 279/526 (53%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + + LGLDL GG H +LEVD D V+ L++Y E++S L+KE + Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ I L F DS + + + D + + + + Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFR--------DFEVVPEERNGLQVLRVA 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G+SE +QR G++RI+++LPG QD + +++L Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F ++ K F +E V I+G + A+A+FD Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299 +P V+I D G TR+N+G+ + + Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+IV+Y +G++A ++ N+++ +AL+S+LGATLTLP IAG Sbjct: 455 NIAKGVDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE SV ++ GF+RA++ I D+N+T+L+ +L+ Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I+ SMFTAI + RAM+ I + K + I Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI 620 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KG+ + + + ++I + +++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGVDASLWGMLFVSLFIIVIYRF-FGVIATVALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ + ++ G L +A ++ +G +V+ V+++ R+R+ + +S + I Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + N + ++ + + + G + FA+ M+ GI+ + ++I + ++ Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVN 607 Query: 822 FIYDWRAKNA 831 I+ R Sbjct: 608 LIFGGRDFKK 617 >gi|167817323|ref|ZP_02449003.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 91] gi|167904195|ref|ZP_02491400.1| preprotein translocase subunit SecD [Burkholderia pseudomallei NCTC 13177] Length = 621 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|116051846|ref|YP_789311.1| preprotein translocase subunit SecD [Pseudomonas aeruginosa UCBPP-PA14] gi|296387663|ref|ZP_06877138.1| preprotein translocase subunit SecD [Pseudomonas aeruginosa PAb1] gi|115587067|gb|ABJ13082.1| protein-export membrane protein SecD [Pseudomonas aeruginosa UCBPP-PA14] Length = 620 Score = 208 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 165/526 (31%), Positives = 279/526 (53%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + + LGLDL GG H +LEVD D V+ L++Y E++S L+KE + Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ I L F DS + + + D + + + + Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFR--------DFEVVPEERNGLQVLRVA 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G+SE +QR G++RI+++LPG QD + +++L Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F ++ K F +E V I+G + A+A+FD Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299 +P V+I D G TR+N+G+ + + Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+IV+Y +G++A ++ N+++ +AL+S+LGATLTLP IAG Sbjct: 455 NIAKGVDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE SV ++ GF+RA++ I D+N+T+L+ +L+ Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I+ SMFTAI + RAM+ I + K + I Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI 620 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KG+ + + + ++I + +++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGVDASLWGMLFVSLFIIVIYRF-FGVIATVALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ + ++ G L +A ++ +G +V+ V+++ R+R+ + +S + I Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + N + ++ + + + G + FA+ M+ GI+ + ++I + ++ Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVN 607 Query: 822 FIYDWRAKNA 831 I+ R Sbjct: 608 LIFGGRDFKK 617 >gi|39997710|ref|NP_953661.1| preprotein translocase subunit SecF [Geobacter sulfurreducens PCA] gi|39984602|gb|AAR35988.1| protein-export membrane protein SecF [Geobacter sulfurreducens PCA] gi|298506644|gb|ADI85367.1| protein export membrane protein SecF [Geobacter sulfurreducens KN400] Length = 302 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 142/303 (46%), Gaps = 5/303 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSIC---LLFTHGLNYGIDFKGGIQLGVLANRP 588 I FM + IS + ++ + + N GIDF GG + + ++P Sbjct: 1 MQIIGKTNFDFMGKKKITFVISSIIALLGLIGVGQIALGTANMGIDFSGGTAVQLNFSQP 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + R L D + Q G LV++ +E +K Sbjct: 61 VAIDQARHALAKHGFKDANLQEVSGGNKLLVKVGKATHVQGPAADAIEDAFRK-EFTDNR 119 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I+++ +GP I +L + +V V+IS + ++IYI RF + F +GA+ + D+ Sbjct: 120 FVIESSTEIGPAIGDKLRKDTLVAVVISLVGIVIYIAWRFDFAFGVGALAATLHDVLAMF 179 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 F + E NL + AVLT+ GYS+ D VVV+DR+R+N+ S + + SINE Sbjct: 180 AVFFVMQKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKNVK-DSLTAICNFSINEV 238 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ T++ F++ + +GG VI FA + GI+V SS+F+A+PI++ Sbjct: 239 LSRTIITALTTFLATASLFFFGGEVIHDFAFALLVGIIVGVYSSVFVASPIVVIWGSRNK 298 Query: 829 KNA 831 + Sbjct: 299 ETK 301 >gi|330894477|gb|EGH27138.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. mori str. 301020] Length = 622 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 166/539 (30%), Positives = 275/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F D +E V + Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + LF++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+ VD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMGVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 156 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 92/250 (36%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + + Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMGVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.9 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W IL + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|15599016|ref|NP_252510.1| preprotein translocase subunit SecD [Pseudomonas aeruginosa PAO1] gi|218889895|ref|YP_002438759.1| preprotein translocase subunit SecD [Pseudomonas aeruginosa LESB58] gi|254242512|ref|ZP_04935834.1| secretion protein SecD [Pseudomonas aeruginosa 2192] gi|81540195|sp|Q9HXI1|SECD_PSEAE RecName: Full=Protein-export membrane protein secD gi|9949995|gb|AAG07208.1|AE004799_14 secretion protein SecD [Pseudomonas aeruginosa PAO1] gi|126195890|gb|EAZ59953.1| secretion protein SecD [Pseudomonas aeruginosa 2192] gi|218770118|emb|CAW25880.1| secretion protein SecD [Pseudomonas aeruginosa LESB58] Length = 620 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 165/526 (31%), Positives = 279/526 (53%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + + LGLDL GG H +LEVD D V+ L++Y E++S L+KE + Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ I L F DS + + + D + + + + Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFR--------DFEVVPEERNGLQVLRVA 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G+SE +QR G++RI+++LPG QD + +++L Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F ++ K F +E V I+G + A+A+FD Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299 +P V+I D G TR+N+G+ + + Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+IV+Y +G++A ++ N+++ +AL+S+LGATLTLP IAG Sbjct: 455 NIAKGIDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE SV ++ GF+RA++ I D+N+T+L+ +L+ Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I+ SMFTAI + RAM+ I + K + I Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI 620 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 92/250 (36%), Gaps = 5/250 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I + +++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIYRF-FGVIATVALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ + ++ G L +A ++ +G +V+ V+++ R+R+ + +S + I Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820 + N + ++ + + + G + FA+ M+ GI+ + ++I + ++ Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVN 607 Query: 821 LFIYDWRAKN 830 L K Sbjct: 608 LIFGGRDFKK 617 >gi|242309304|ref|ZP_04808459.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239524345|gb|EEQ64211.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 323 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 82/304 (26%), Positives = 168/304 (55%), Gaps = 4/304 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 F++ +G+ +S + + S+ L F G G+DF GG + + Sbjct: 1 MEFFRHNKIYDFVKWSNYGIILSAILFVGSLFLFFKPGFTLGVDFAGGTIVQIQYKEIAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ +R LES++ + + G ++ +V Q E+ ++ + Sbjct: 61 LAQIREKLESVESYKGAQVSEFGSPQEILIRLSVATSNVNQNIGEEI--AELLKDTGDLQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I+ ++VGPK+ EL KGI+ + ++ I++++Y+ R++W FAL +I L+ D+ G Sbjct: 119 IRRVDVVGPKVGNELKEKGILALTLALISIMVYVAYRYEWRFALASILALVHDVVIAAGA 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF ++ +L +AA+LTLIGYS+ND ++++DR+R+ M + ++ + +++++++ TL Sbjct: 179 VILFDVDLSLEVIAALLTLIGYSINDTIIIFDRIRETMSVKASN-DLKAVVNEALSATLS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY-DWRAK 829 R++ TS+ F VL + ++GG +I F++PM G +V + SSIF+A+ +++ + D + Sbjct: 238 RTMLTSLTVFFVVLTLYLFGGEIIKGFSLPMLVGSIVGSYSSIFVASKLVMLLGFDLKKY 297 Query: 830 NARI 833 + ++ Sbjct: 298 HQKL 301 >gi|167847219|ref|ZP_02472727.1| preprotein translocase subunit SecD [Burkholderia pseudomallei B7210] Length = 622 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|167837805|ref|ZP_02464688.1| preprotein translocase subunit SecD [Burkholderia thailandensis MSMB43] Length = 618 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 163/499 (32%), Positives = 267/499 (53%), Gaps = 16/499 (3%) Query: 29 QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 QS R+ +A+ + LGLDLRGG H +L+VD + L + + R+ L+ +GI Sbjct: 104 QSASPRWLTALRALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRD 163 Query: 89 FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148 + ++ + +FAD E + + + ++ + Sbjct: 164 GGVARVDQTVVANFADQDTAEQARTLLASSVSELQWATQPG--------GGGYQVVGTFT 215 Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 V A++Q++ + R++++G+SE +Q+ G+ RI+++LPG QD ++ + ++G Sbjct: 216 PAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGR 275 Query: 209 TAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 TA + P N G + L++ +V +G + A+A FD Sbjct: 276 TATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRIIDASAGFDEH 335 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQAIPSGKAQISG 321 +P V+I D G R V+R+NIGKP+A+VL + + Q+ + QI+G Sbjct: 336 Q-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITG 394 Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381 T + A LA +LRAGSL ++I+EER +G LG+D+I G +++ G V I +FMI Sbjct: 395 QPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAITVFMIA 454 Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441 Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+A+DSN+L+NERIREE Sbjct: 455 YYMLFGVVSVLGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREE 514 Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501 R+ S ++ G++ A++TI DSN+T LIA + L FG G VR FAI L IL SMF Sbjct: 515 LRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMF 574 Query: 502 TAISIVRAMMIFIIRYKKM 520 +A+ R ++ +K Sbjct: 575 SAVFFSRGLVNLWYGGRKK 593 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAITVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|107103341|ref|ZP_01367259.1| hypothetical protein PaerPA_01004410 [Pseudomonas aeruginosa PACS2] Length = 620 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 165/526 (31%), Positives = 279/526 (53%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + + LGLDL GG H +LEVD D V+ L++Y E++S L+KE + Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ I L F DS + + + D + + + + Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFR--------DFEVVPEERNGLQVLRVA 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G+SE +QR G++RI+++LPG QD + +++L Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F ++ K F +E V I+G + A+A+FD Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299 +P V+I D G TR+N+G+ + + Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+IV+Y +G++A ++ N+++ +AL+S+LGATLTLP IAG Sbjct: 455 NIAKGIDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE SV ++ GF+RA++ I D+N+T+L+ +L+ Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I+ SMFTAI + RAM+ I + K + I Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI 620 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I + +++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIYRF-FGVIATVALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ + ++ G L +A ++ +G +V+ V+++ R+R+ + +S + I Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + N + ++ + + + G + FA+ M+ GI+ + ++I + ++ Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVN 607 Query: 822 FIYDWRAKNA 831 I+ R Sbjct: 608 LIFGGRDFKK 617 >gi|298291857|ref|YP_003693796.1| protein-export membrane protein SecF [Starkeya novella DSM 506] gi|296928368|gb|ADH89177.1| protein-export membrane protein SecF [Starkeya novella DSM 506] Length = 319 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 117/299 (39%), Positives = 187/299 (62%), Gaps = 6/299 (2%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + ++PD FMR R IS + SI ++ T GLN+GIDFKGG L V Sbjct: 1 MRLLRIVPDDTNFDFMRFRRISFPISAVLSIVALVAFLTLGLNFGIDFKGGTLLEVRYPN 60 Query: 588 PV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 ++ VRS LE+L++G++ Q G+ L+R+ QPG AQ V+ V+ + Sbjct: 61 NTLNIGDVRSKLEALELGEVQIQEIGGDGEVLIRVAQQPGGEQAQQAVVGKVRTAL---G 117 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 + E+VGP++S+EL+ GIVG++++ +LIY+W RF+W FALGA DI Sbjct: 118 EGVEYRRVEVVGPRVSQELLSYGIVGLMLAVFCILIYLWFRFEWQFALGASIANFHDIVL 177 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T+GF ++F I+F+LT+VAA+LT++GYS+ND +V+YDR+R+ ++ Y + +L++ SIN Sbjct: 178 TIGFMSIFQIDFDLTSVAALLTILGYSLNDTIVIYDRIREMLRRY-KKMPTDELLNHSIN 236 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824 TL RSV T + +++L + ++GG I SF++ M FG ++V +SIFIA+P+L+++ Sbjct: 237 STLSRSVITHVTVTLALLALVLFGGRAIHSFSVTMMFGVVLVGTYTSIFIASPLLIYLG 295 >gi|187477346|ref|YP_785370.1| preprotein translocase subunit SecF [Bordetella avium 197N] gi|115421932|emb|CAJ48452.1| protein-export membrane protein [Bordetella avium 197N] Length = 311 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 153/302 (50%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ I ++ + T G + I+F GG + V + Sbjct: 1 MEFFRIHRTIPFMRHALVLNIISLVTFIAAVFFIITRGFHLSIEFTGGTVMEVSYAQTAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR + L D QNF ++ ++RL G + A E V + Sbjct: 61 LDQVRGVVGKLGYTDFQVQNFGTSRDVMIRLPVSAGQTSATQS--ETVLAALKAADNSVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL+ G++ ++ + ++IY+ IRF+W FAL + + D+ LGF Sbjct: 119 LRRVEFVGPQVGQELLNNGLMALLFVVVGIMIYLGIRFEWKFALAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +A VL ++GYSVN+ VV+ DR+R+N + Y ++I+ +I +T+ Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKYRK-ADVHEVINSAITQTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI SS+F+AA + ++ R Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPSLHYFALALTIGIWFGIYSSVFVAAALAMWFGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 Score = 45.1 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 93/196 (47%), Gaps = 5/196 (2%) Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GK 385 + + + + VG +G + + G A++ +V I++++ + + K Sbjct: 100 ATQSETVLAALKAADNSVELRRVEFVGPQVGQELLNNGLMALLFVVVGIMIYLGIRFEWK 159 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 + L + +V++ L + +L +AG++ +G +V+ ++++ +RIRE RK Sbjct: 160 FALAGVIANLHDVVIILGFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKY 219 Query: 446 Q--SVFCSLDMGFSRAYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 + V ++ ++ S TI T ++ +LFF GG ++ FA+ + + I +++ Sbjct: 220 RKADVHEVINSAITQTISRTIITHGSTQMMVLAMLFF-GGPSLHYFALALTIGIWFGIYS 278 Query: 503 AISIVRAMMIFIIRYK 518 ++ + A+ ++ + Sbjct: 279 SVFVAAALAMWFGVKR 294 >gi|262402873|ref|ZP_06079434.1| protein-export membrane protein SecD [Vibrio sp. RC586] gi|262351655|gb|EEZ00788.1| protein-export membrane protein SecD [Vibrio sp. RC586] Length = 606 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + LGLDLRGG H ++EVD D + + + R L+ E I Sbjct: 93 NLAPSTPNWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVTQQEEAFRGDLRDEKI 152 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D T + Sbjct: 153 RYRAIRPLPDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 204 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 205 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 264 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 265 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 323 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 324 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 383 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 443 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 444 GIQACIWGMVAVMLFTLLYYRKFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVL 503 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 563 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 564 GAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRINKLSI 606 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 360 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 419 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYR-KFGMIANVALMANL 478 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 535 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLM 595 Query: 824 YDWRAKNA 831 Y + N Sbjct: 596 YGGKRINK 603 >gi|237747210|ref|ZP_04577690.1| preprotein translocase subunit SecF [Oxalobacter formigenes HOxBLS] gi|229378561|gb|EEO28652.1| preprotein translocase subunit SecF [Oxalobacter formigenes HOxBLS] Length = 313 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 153/302 (50%), Gaps = 2/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ L+ GL+ ++F GG + V D Sbjct: 1 MEFFRIKKDIPFMRHALIFNIISLITFLAAVFFLWHKGLHLSVEFTGGTVMEVSYKNAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R+ + L G+ G V + + + E V + P + Sbjct: 61 LDRIRNTVRDLGFGNDFQVQNFGRAQD-VMINLPVQKDLTSAQQSEKVMTALLAQNPDAR 119 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ EL G++ + + I ++IY+ RF+W +A+ AI + DI LGF Sbjct: 120 LQRVEFVGPQVGDELTHDGLMALAMVVIGIIIYLAFRFEWKYAISAIIANLHDIVIILGF 179 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ V+++DR+R+N + S ++++ +I T+ Sbjct: 180 FAFFEWEFSLSVLAAVLAILGYSVNESVIIFDRIRENFRKMRK-ASVMEIVNHAITSTIS 238 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M ++GG + +FA+ + GI SS+F+AA + +++ R Sbjct: 239 RTIITHGSTQLMVLSMLIFGGPTLHNFALALTIGICFGIYSSVFVAAAVAMWLGIKREDL 298 Query: 831 AR 832 + Sbjct: 299 VK 300 >gi|124265470|ref|YP_001019474.1| preprotein translocase subunit SecD [Methylibium petroleiphilum PM1] gi|124258245|gb|ABM93239.1| export membrane protein SecD [Methylibium petroleiphilum PM1] Length = 626 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 166/519 (31%), Positives = 276/519 (53%), Gaps = 27/519 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + LL P +L + LGLDLRGG H +++VD + + Sbjct: 105 IVALNLLSRSPTWLRSLHA---------LPMYLGLDLRGGVHFLMQVDMKAALTKRADVL 155 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++RS L+ + I + + N +T++F D+ + + V ++ D + + Sbjct: 156 TGDIRSLLRDKSIRHAGIAREGNTVTIAFRDAATR--------TAARAVLTEPLPDLQWS 207 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 +E ++ L +V AI+Q++ + RI+++G++E IQ+ G+ R+++QL Sbjct: 208 EAARDSEFTLTGSLKAEAARRVQDQAIKQNITTLHNRINELGVAEPVIQQQGADRVVVQL 267 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------DGNQYLVEDK 246 PG QD ++ + ++G TA + V + G + G +V+ + Sbjct: 268 PGVQDTAKAKDIIGRTATLELRMVDDSAEAAAAATGSGPVPFGAERYVERGGAALIVKRQ 327 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VL 303 V ++G L A FD +T +P V ++ D GAR +V+RDN+GK +A++L + + Sbjct: 328 VILTGDSLTDAQPGFDGQTQEPAVHLTVDAKGARIMRDVSRDNVGKRMAILLFEKGKGEV 387 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 + + + QISG T + A A +LRAGSL + IVEER +G LG+++I K Sbjct: 388 VTAPVIRGELGSRFQISGRMTTQEASDTALLLRAGSLAAPMEIVEERTIGPSLGAENIDK 447 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G +++ G I FM Y +G+ + ++ +N++L +A+LS+L ATLTLP IA I L Sbjct: 448 GFNSVIYGFAAIAAFMCAYYLLFGVFSTIALAVNLLLLVAVLSMLQATLTLPGIAAIALT 507 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+A+D+N+L+NER+REE R S ++ G+ RA++TIFDSNIT LIA V L FG G Sbjct: 508 LGMAIDANVLINERVREELRAGASPQAAIHTGYERAWATIFDSNITTLIAGVALLAFGSG 567 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 VRGFA+ L IL SMF+A+ R ++ +K Sbjct: 568 PVRGFAVVHCLGILTSMFSAVLFSRGLVNLWYGRRKKLK 606 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 80/207 (38%), Gaps = 4/207 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + E I KG VI A+ ++ Sbjct: 404 SGRMTTQEASDTALLLRAGSLAAPMEIVEERTIGPSLGAENIDKGFNSVIYGFAAIAAFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + + L +++ + ++ L +AA+ +G +++ V++ +R+ Sbjct: 464 CAYY-LLFGVFSTIALAVNLLLLVAVLSMLQATLTLPGIAAIALTLGMAIDANVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I +++ I+ + + +G + FA+ G Sbjct: 523 REELRA---GASPQAAIHTGYERAWATIFDSNITTLIAGVALLAFGSGPVRGFAVVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831 I+ + S++ + ++ Y R K Sbjct: 580 ILTSMFSAVLFSRGLVNLWYGRRKKLK 606 Score = 40.8 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 25/120 (20%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W + ++ +GL+ LPNF ++ ++V Sbjct: 3 RYPWWKYAILAIALLVGLVYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + L+ G+ ++ I F D+ + D + L Sbjct: 38 SGKATLKVDATVVPRVEQALQAAGLQADFVQLDGASIKARFRDTDAQIKAKDAIAKALNP 97 >gi|226198382|ref|ZP_03793951.1| protein-export membrane protein SecD [Burkholderia pseudomallei Pakistan 9] gi|225929565|gb|EEH25583.1| protein-export membrane protein SecD [Burkholderia pseudomallei Pakistan 9] Length = 665 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 100 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 151 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 206 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 207 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 262 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 263 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 322 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 323 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 381 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 382 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 441 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 442 SVIWGFVAIAVFMIAYYMLFGVVSVLGLLVNLLLLVAVLSLMQATLTLPGIAAIALALGM 501 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 502 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 561 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 562 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 595 Score = 129 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 89/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 395 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 454 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L++++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 455 IAYY-MLFGVVSVLGLLVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 513 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 514 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 570 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 571 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 599 >gi|167564032|ref|ZP_02356948.1| preprotein translocase subunit SecF [Burkholderia oklahomensis EO147] gi|167571178|ref|ZP_02364052.1| preprotein translocase subunit SecF [Burkholderia oklahomensis C6786] Length = 316 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 159/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L +L D QNF +N L+RL + G + AQ + V + T Sbjct: 61 LEPVRATLGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMGALKAQSADVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ +++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|289208480|ref|YP_003460546.1| protein exporter SecF [Thioalkalivibrio sp. K90mix] gi|288944111|gb|ADC71810.1| protein-export membrane protein SecF [Thioalkalivibrio sp. K90mix] Length = 315 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 160/297 (53%), Gaps = 1/297 (0%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L + F+ R + +S++ + S+ LL T GLN+GIDF GG + V V+L Sbjct: 4 HLNFAESNLDFLGKRKITITVSLILILISVALLATRGLNFGIDFTGGTLVEVGYPEAVEL 63 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 +R L Q F ++ L+RL D T ++ + Sbjct: 64 DPIRETLAEGGFAGAQVQTFGTSRDVLIRLPPSEDDDDPATLSNRVLNALQDGGPDDPDL 123 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + E VGP + EL +G + +I + +LIY+ +RF+W F++GA+ LI D+ TLG F Sbjct: 124 RRVEFVGPAVGEELREQGGLAMIYALAGILIYVAVRFEWRFSIGAVFALIYDVVITLGIF 183 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +L +EF+L +AAVL +IGYS+ND +VVYDR+R+N ++ + ++++ ++N+TL R Sbjct: 184 SLLQLEFDLGVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKKGT-EEVMNIAVNKTLAR 242 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ TS + + +A GG+ + +F+I + G++V SSIFIAA L + R Sbjct: 243 TIITSTTTLLVLFALAFLGGAALQNFSIALIIGVIVGTYSSIFIAATAALLLGVDRQ 299 >gi|71737751|ref|YP_276144.1| multidrug/solvent transporter [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558304|gb|AAZ37515.1| multidrug/solvent tranporter [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325503|gb|EFW81565.1| multidrug/solvent transporter [Pseudomonas syringae pv. glycinea str. B076] gi|320327209|gb|EFW83223.1| multidrug/solvent transporter [Pseudomonas syringae pv. glycinea str. race 4] Length = 1044 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ + F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + V+ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 67.4 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + V S S + +S N + L Sbjct: 778 RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGE 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + + + Sbjct: 1009 ITAVILAIFWVPLFFVSVSGLFKSKKK 1035 >gi|298488622|ref|ZP_07006652.1| Inner membrane efflux transporter of RND family multidrug efflux pump [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156963|gb|EFH98053.1| Inner membrane efflux transporter of RND family multidrug efflux pump [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1044 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 70/687 (10%), Positives = 184/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ K+ F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + V+ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 67.0 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + V S S + +S N + L Sbjct: 778 RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGE 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + + + Sbjct: 1009 ITAVILAIFWVPLFFVSVSGLFKSKKK 1035 >gi|66047235|ref|YP_237076.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv. syringae B728a] gi|63257942|gb|AAY39038.1| Hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv. syringae B728a] Length = 1044 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKDAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ + F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + V+ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + A V S S S +S N + L Sbjct: 778 RMTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSSGD 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMNEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + + + Sbjct: 1009 ITAVILAIFWVPLFFVTVSGLFKSKQK 1035 >gi|257462582|ref|ZP_05626992.1| protein translocase subunit secF [Fusobacterium sp. D12] gi|317060234|ref|ZP_07924719.1| translocase subunit secF [Fusobacterium sp. D12] gi|313685910|gb|EFS22745.1| translocase subunit secF [Fusobacterium sp. D12] Length = 313 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 151/284 (53%), Gaps = 3/284 (1%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 + +G++++ I S+ + F GLNYGIDF GG L + + V L + +L+ + Sbjct: 7 KHSKRYLGLALMMVILSLGVFFAKGLNYGIDFSGGNLLQIRYEKEVTLHDINKSLDQI-- 64 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663 DI + K + + + V + + I + VG + + Sbjct: 65 KDIPQIGTNSRKVQTSEDNTVIIRTQEISEEDKKVILNQLKTIGNYQIDKEDKVGASVGK 124 Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723 EL I + I A+ ++IYI RF++ FA+GAI L+ D+ +G +L E N + Sbjct: 125 ELKTSAIYALGIGAVLIIIYITFRFEFIFAIGAIIALLHDLILAIGCISLLYYEINTPFI 184 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 AA+LT++GYS+ND +VV+DR+R+N+ + T++S + + KS+N+ + RS+ TS+ + Sbjct: 185 AAILTILGYSINDTIVVFDRIRENLKRRGKTNMSIEECLTKSVNQVMIRSINTSVTTLFA 244 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 ++ + + GG + +F + + GI+ SS+FIA P++ F++ Sbjct: 245 IVAILLLGGDSLRTFIVTLLVGILAGTYSSVFIATPVVYFLHKK 288 >gi|163749707|ref|ZP_02156953.1| protein-export membrane protein SecF [Shewanella benthica KT99] gi|161330520|gb|EDQ01478.1| protein-export membrane protein SecF [Shewanella benthica KT99] Length = 315 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 169/299 (56%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F ++ + F+R +S++ I S+ L T G+N+G+DF GGI + + + Sbjct: 1 MFQILSIKGTVNFLRHAVPISILSLILVIASLTSLATKGINWGLDFTGGIVVELEFSSTA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R+ L S + + Q+F ++ + RL + G + + + ++ P Sbjct: 61 NLQALRAELTSEETEGVVVQHFGSSRDVITRLPIKEGVKSETQ--VAQIMEAAIKLDPQV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E+VGP+I +EL +G + V+++ I +LIY+ RF+W ALGA+T L D+ TLG Sbjct: 119 IQKRVEMVGPQIGQELAEQGGLAVLVALICILIYVSFRFEWRLALGAVTALAHDVIITLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L ++F+LT +A +LT++GYS+ND +VV+DR+R+N S ++I+ SI +T+ Sbjct: 179 VFSLLQLDFDLTVLAGILTVVGYSLNDTIVVFDRIRENFLKMRKG-SPEEIINISITQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T+ + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296 >gi|218961312|ref|YP_001741087.1| protein-export membrane protein secF, accessory membrane protein [Candidatus Cloacamonas acidaminovorans] gi|167729969|emb|CAO80881.1| protein-export membrane protein secF, accessory membrane protein [Candidatus Cloacamonas acidaminovorans] Length = 327 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 98/318 (30%), Positives = 165/318 (51%), Gaps = 18/318 (5%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN----- 586 I IQF+++R+W GISI + S+C + GLN+ IDF GI V Sbjct: 1 MRILKNPNIQFVKSRYWFYGISIALLLISLCGIIFKGLNWSIDFTSGIAATVNLKALDPK 60 Query: 587 -RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ------PGDSVAQTRVLEMVK 639 V + +R+ L + N +++ + + +T++LE+++ Sbjct: 61 VPAVPIENLRTVLTKNGFPEAEITYIGNPANSTFQIKIKSVGKGTDLSTETRTKLLEIIQ 120 Query: 640 KKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + E V + VGPK+ EL + V+++ IAM+IYIW RF++ F L Sbjct: 121 QNFPEYVQGRDLNKEVIEEIYEVGPKVGSELRSQAFWAVMLALIAMIIYIWFRFEFTFGL 180 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 I L D+ +GFFAL G E + +AA+LT++GYS+ND +V++DR+R++MK Sbjct: 181 MGILALFHDVFLIVGFFALTGKEITMQIIAALLTIVGYSINDTIVIFDRIREDMKKNRK- 239 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 + + ++SIN+TL R+V T F++ + +WGGSVI FA+ + GI+ SSIF Sbjct: 240 DPIQVVFNRSINDTLSRTVITGGTTFLTSACLFLWGGSVIHDFALAICLGILFGTYSSIF 299 Query: 815 IAAPILLFIYDWRAKNAR 832 +A+ +++ + K + Sbjct: 300 VASNLVIDLNLITHKERK 317 >gi|157803299|ref|YP_001491848.1| preprotein translocase subunit SecF [Rickettsia canadensis str. McKiel] gi|166977669|sp|A8EXI0|SECF_RICCK RecName: Full=Protein-export membrane protein secF gi|157784562|gb|ABV73063.1| protein export protein SecF [Rickettsia canadensis str. McKiel] Length = 310 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 173/298 (58%), Gaps = 2/298 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + L+P+ I FM + SI+ S+ S+ + + N+GIDF GGI + V Sbjct: 1 MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISVISIGIYKFNFGIDFVGGIVIEVRL 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 ++ DL +R L L IG++ QNF E++ +RL ++ + + Sbjct: 61 DQTPDLPKMRQILGELGIGEVVLQNFGSERDLSIRL-GSSSEANLMENIELIKASLHNNF 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 + + VGP++ R+LI G + ++ S +A+++YIW+RF+WYF LG + L+ D+ Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGTMAMLFSFLAIMVYIWVRFEWYFGLGILIALMHDLI 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 LGF ++ ++ NL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y + ++I+ SI Sbjct: 180 LALGFMSMTKLDCNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYYKK-NITEIINLSI 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 NETL R++ T + ++ L + ++GG I SF++ + FGI+ SSIFI+APIL Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMF 296 >gi|323499865|ref|ZP_08104824.1| preprotein translocase subunit SecD [Vibrio sinaloensis DSM 21326] gi|323315106|gb|EGA68158.1| preprotein translocase subunit SecD [Vibrio sinaloensis DSM 21326] Length = 607 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 150/524 (28%), Positives = 277/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L++ I Sbjct: 93 NLAPATPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 152 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + ++ + + + D + ++ Sbjct: 153 RYRAIRPSGKEGVEVLLRNAEQLAEAEALLK--------QNHPDMIFVDSDSNGRFALTA 204 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 205 TFTEQRLTEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264 Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V + G +D DG +++ +V + G + ++ Sbjct: 265 LGATATLEFREVDASADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILGGQSITD-ASS 323 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + ++ NIGK +A V Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILSKHEE 383 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A + G+V ++LF ++ Y K+G +A+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 444 MGIQACIWGMVAVMLFTLLYYRKFGFIANMALMANLVLIIGVMSMIPGATMTLPGIAGIV 503 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 LTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIVGTRCVVNLMYGGKRINKLSI 607 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 90/213 (42%), Gaps = 5/213 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G A + + ++ +I +GP + ++ I GI I +A Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++++ + ++ F A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMLFTLLYYR-KFGFIANMALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ + + I + ++ I+ + + G I FA Sbjct: 515 LIFERIREELRE---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ GI+ + ++I ++ +Y + N Sbjct: 572 VTLSIGILTSMFTAIVGTRCVVNLMYGGKRINK 604 >gi|171320044|ref|ZP_02909114.1| protein-export membrane protein SecD [Burkholderia ambifaria MEX-5] gi|171094703|gb|EDT39747.1| protein-export membrane protein SecD [Burkholderia ambifaria MEX-5] Length = 673 Score = 208 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 159/516 (30%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ I + ++ + ++F+D++ E+ + + + Sbjct: 160 ASDARALLRDRNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLAASVTELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ GS RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKEVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRSVRTVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+++ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608 Score = 41.2 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + + + ++ LD Sbjct: 3 RYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQ----VSSGKATVKLD------------ 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + L L S K F I + D+ + + D + L Sbjct: 47 -----STTLTQVESALASAQIKPDDITFENTASNANIRVRLKDTDTQLRVKDLLQKSLNA 101 >gi|330957508|gb|EGH57768.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 622 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 166/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F D +E V + Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVN 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + +F++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 154 bits (388), Expect = 5e-35, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 R + V + + + ++ L G + + + Sbjct: 374 TTTYTRQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + I+I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 42.4 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W IL + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALTDA----------GIAVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|21957737|gb|AAM84575.1|AE013703_5 protein secretion, membrane protein [Yersinia pestis KIM 10] gi|45435449|gb|AAS61008.1| protein-export membrane protein SecF [Yersinia pestis biovar Microtus str. 91001] Length = 344 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 86/301 (28%), Positives = 168/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + G+S+L + SI ++ T G N+G+DF GG + + Sbjct: 27 YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLEN 86 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R L++ QNF ++ +VR+ G Q +++ + Sbjct: 87 PADLDQLRDTLQNAGFESPILQNFGSSRDVMVRMPPATGT-AGQELGNKIISVINESVDK 145 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + ++++ +++L+Y+ RF+W ALGA+ +L D+ T Sbjct: 146 NASVKRIEFVGPSVGSDLAQAGALALLVALLSILVYVGFRFEWRLALGAVISLAHDVVIT 205 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 206 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 264 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 265 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVTIGTVSSIYVASALALKLGMKR 324 Query: 828 A 828 Sbjct: 325 E 325 >gi|288555357|ref|YP_003427292.1| preprotein translocase subunit SecF [Bacillus pseudofirmus OF4] gi|288546517|gb|ADC50400.1| preprotein translocase subunit SecF [Bacillus pseudofirmus OF4] Length = 314 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 7/305 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I F++ R S+ + + LL T GLN GIDF+ G Q+ +LA P+ Sbjct: 1 MSFNFQNREIDFVQHRKKFFTFSLAAMLIGVILLLTMGLNLGIDFESGSQVEILAEEPLT 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 V + + G G + G A Sbjct: 61 AEQVEAEFAQIGSGYTPDDITLGGDRNEMATARFIGVLDASEIAEIQSYF----SENFGA 116 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 N V P + +EL R ++ V+I+++ ++IY+ IRF++ + + AI L+ D + Sbjct: 117 EPNIGTVSPTVGQELARNALISVLIASVGIIIYVTIRFEFLYGVAAIVALLHDAFFIIAV 176 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINE 767 F+L I+ N+ +AAVLT++GYS+ND +V +DR+R+NMKL F D +++KS+ + Sbjct: 177 FSLLQIQVNVPFIAAVLTIVGYSINDTIVTFDRIRENMKLTKRVKDFNDLAAVVNKSLVQ 236 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL RS+ T + + + ++GG I SFA+ + G+V SS+F+A+ + L + Sbjct: 237 TLARSINTVLTVVFAAAALFIFGGEAIRSFALALLIGLVAGTYSSMFLASQLWLIWKSKQ 296 Query: 828 AKNAR 832 K + Sbjct: 297 LKKQK 301 >gi|221202265|ref|ZP_03575299.1| protein-export membrane protein SecD [Burkholderia multivorans CGD2M] gi|221209145|ref|ZP_03582138.1| protein-export membrane protein SecD [Burkholderia multivorans CGD2] gi|221170963|gb|EEE03417.1| protein-export membrane protein SecD [Burkholderia multivorans CGD2] gi|221177839|gb|EEE10252.1| protein-export membrane protein SecD [Burkholderia multivorans CGD2M] Length = 673 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 160/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + RS L+ + I + ++ + ++F+D++ E+ + + + Sbjct: 160 AADARSLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLASSITELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQVPVLLKKDVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+++ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + I+ Y R K + Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608 Score = 41.6 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 29/124 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ ++V Sbjct: 3 RYPLWKYVVMVVALAIGFLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIADKVTL 117 ++ + L I + I + D+ + + D + Sbjct: 38 SGKATVKLDANTLTQVETALAAAQIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQK 97 Query: 118 FLQG 121 L Sbjct: 98 TLNA 101 >gi|167618753|ref|ZP_02387384.1| preprotein translocase subunit SecD [Burkholderia thailandensis Bt4] Length = 624 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 164/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 IVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQVPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|255744550|ref|ZP_05418501.1| protein-export membrane protein SecD [Vibrio cholera CIRS 101] gi|262161316|ref|ZP_06030427.1| protein-export membrane protein SecD [Vibrio cholerae INDRE 91/1] gi|255737581|gb|EET92975.1| protein-export membrane protein SecD [Vibrio cholera CIRS 101] gi|262029066|gb|EEY47719.1| protein-export membrane protein SecD [Vibrio cholerae INDRE 91/1] Length = 606 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 93 NLAPSTPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 152 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + ++ D+ + + D + + Sbjct: 153 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 204 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 205 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 264 Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D +G +++ +V + G + ++ Sbjct: 265 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 323 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303 + +P V+IS D G + ++ NIGK +A V + Sbjct: 324 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 383 Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 443 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422 G A + G+V ++LF ++ Y K+G++A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 444 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 503 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 563 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 564 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 606 Score = 145 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + + Sbjct: 360 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 419 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I +A++++ + ++ F + A L+ ++ Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 478 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 535 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I I+ + Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 595 Query: 824 YDWRAKNA 831 Y + N Sbjct: 596 YGGKRINK 603 >gi|298486006|ref|ZP_07004080.1| protein-export membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159483|gb|EFI00530.1| protein-export membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 622 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 167/539 (30%), Positives = 277/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F+D +E V + Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFSDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + LF++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 155 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + + Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.5 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W IL + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALADA----------GISVKASSLAENGMGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|85716183|ref|ZP_01047158.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A] gi|85697016|gb|EAQ34899.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A] Length = 346 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 118/307 (38%), Positives = 188/307 (61%), Gaps = 6/307 (1%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 L ++PD F R R IS + SI +I L FTHGLN+GIDFKGG L V Sbjct: 22 FGLLPSLRIVPDDTHFDFTRFRRISFPISAVLSIVAIALFFTHGLNFGIDFKGGTLLEVQ 81 Query: 585 ANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A D++ +R+ L L +G++ Q F G L+R+ QPG AQ ++ V+ + Sbjct: 82 AKSGEADIASMRTTLSKLDLGEVQLQQFGGPTEVLIRVAEQPGGDAAQQAAVQKVRGAL- 140 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + E+VGP++S EL+ G+VG++++ + +L+Y+W RF+W FALGA+ + D Sbjct: 141 --GDSVNYRRVEVVGPRVSGELLAYGMVGLMLAILGILMYLWFRFEWQFALGAMVANVHD 198 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I T+GF ++ ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y + DL+++ Sbjct: 199 IVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPDLLNE 257 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822 SIN TL RS+ T +++L + ++GG I SF M FG ++V +SIFIAAPIL++ Sbjct: 258 SINSTLSRSIITHATVTLALLALLLFGGPAIHSFTAVMTFGVVLVGTYTSIFIAAPILIY 317 Query: 823 IYDWRAK 829 + + Sbjct: 318 LGVGENR 324 >gi|254480060|ref|ZP_05093308.1| protein-export membrane protein SecD [marine gamma proteobacterium HTCC2148] gi|214039622|gb|EEB80281.1| protein-export membrane protein SecD [marine gamma proteobacterium HTCC2148] Length = 625 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 156/525 (29%), Positives = 268/525 (51%), Gaps = 37/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ PS + + LGLDLRGG H LEVD + + ++ Y + + L++ I Sbjct: 107 NLAPTTPSWLSDFGAQPVKLGLDLRGGVHFKLEVDVNAAIERRMEYYLNATKRALREARI 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + ++ F + + + ++ + + + + + Sbjct: 167 RGYVNVDDKGRLETKFKSES--------LREQARTIIAENHPELVLDRVDEEDSWNLYGA 218 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ ++ +A+ Q++ +R R++++G+SE +QR G +RI+++L G QD + +++L Sbjct: 219 MADATRKELADYAVSQNLTTLRNRVNELGVSEPLVQRQGQNRIVVELAGIQDTAEAKRIL 278 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-DSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 G A + F V + + D G +E ++ ++G + A A+FD Sbjct: 279 GKVANLEFRMVAKLEAASSEKQRFEYRSTDRAGMSEWLERELILTGERVTNAQASFDQNG 338 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301 +P V IS D G TRDNI + + V D + Sbjct: 339 -QPNVQISLDSEGGLLMNRATRDNIKRRMGVLFIERKYRTHYERGEDGEEVAVKVPYDEK 397 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + Q+ + QI+G + A LA MLRAG+L + VEER VG LG+++I Sbjct: 398 KLLTAPVIQSALGAQFQITGLDSPLEASELALMLRAGALAAPITFVEERTVGPSLGAENI 457 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 G ++ GL L+VLFM++ Y +G+ A ++ N++L +A +S++GATLTLP IAGIV Sbjct: 458 RLGVKSVQMGLALVVLFMVLYYRVFGIAAVVALSCNLVLMIAFMSMIGATLTLPGIAGIV 517 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ RIREE R S ++ GF RA +TI D+NIT LI ++L+ G Sbjct: 518 LTVGMAVDANVLIFSRIREELRNGMSPQMAIHSGFERAVATILDANITTLIVAIILYAVG 577 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 G V+GFA+T+ + I+ SMFTAI RA++ I ++++ + I Sbjct: 578 TGPVKGFAVTLSVGIVTSMFTAILGTRALINLIYGGRRVEKLSIG 622 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 97/256 (37%), Gaps = 5/256 (1%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 G + + + + D + Q+Q + Sbjct: 364 RRMGVLFIERKYRTHYERGEDGEEVAVKVPYDEKKLLTAPVIQSALGAQFQITGLDSPLE 423 Query: 634 VLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 E + + + T VGP + E IR G+ V + +++++ + ++ F Sbjct: 424 ASELALMLRAGALAAPITFVEERTVGPSLGAENIRLGVKSVQMGLALVVLFMVLYYRV-F 482 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 + A+ L ++ + F ++ G L +A ++ +G +V+ V+++ R+R+ ++ Sbjct: 483 GIAAVVALSCNLVLMIAFMSMIGATLTLPGIAGIVLTVGMAVDANVLIFSRIREELR--- 539 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 +S + I + + ++ I + + G + FA+ ++ GIV + ++ Sbjct: 540 NGMSPQMAIHSGFERAVATILDANITTLIVAIILYAVGTGPVKGFAVTLSVGIVTSMFTA 599 Query: 813 IFIAAPILLFIYDWRA 828 I ++ IY R Sbjct: 600 ILGTRALINLIYGGRR 615 >gi|330965897|gb|EGH66157.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 622 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 166/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F D +E V + Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + +F++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIASGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 94/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + + Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + I+I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---SGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.5 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALTDA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|291301294|ref|YP_003512572.1| protein-export membrane protein SecF [Stackebrandtia nassauensis DSM 44728] gi|290570514|gb|ADD43479.1| protein-export membrane protein SecF [Stackebrandtia nassauensis DSM 44728] Length = 416 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 69/305 (22%), Positives = 138/305 (45%), Gaps = 16/305 (5%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT----HGLNYGIDFKGGIQLGVLANRPVDLSV 593 + F++ R GIS++ + S+ L + +N+GI+F GG Q V L+ Sbjct: 27 TTVDFIKRRLLWYGISLVLMLVSLSGLGLAIGSNHMNWGIEFVGGTQFQGAVKEGVSLTE 86 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 V + +E+ + ++ Q + V ++ + + Q + E + + + Sbjct: 87 VEAAVEADGVEVVTAQTAGTGDDATVVVRTESLPNKEQQEIQEAMSAALGGEEV-----S 141 Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 V + K + +S ++ Y+W R++ A+ AI LI D+ T G +A+ Sbjct: 142 ISNVSESWGASVSTKAYWALGVSLALIMGYLWWRYERKMAIAAILALIHDLILTAGIYAI 201 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGR 771 G E + V +LT++GYS+ D VVV+D++ +N + L ++ + + +IN+TL R Sbjct: 202 VGFEITPSTVIGMLTILGYSLYDTVVVFDKVHENTRGVLSQQRYTYGESANLAINQTLMR 261 Query: 772 SVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 S+ T++ + V + G + A+ + G+ A SS+F+A P+++ Sbjct: 262 SINTTLIGLLPVGGLLFVGAGLLGVGTLKDLALVLFVGMATGAYSSLFLATPLVVDFKLR 321 Query: 827 RAKNA 831 Sbjct: 322 EKDYK 326 >gi|254243524|ref|ZP_04936846.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexB [Pseudomonas aeruginosa 2192] gi|126196902|gb|EAZ60965.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexB [Pseudomonas aeruginosa 2192] Length = 1046 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 72/686 (10%), Positives = 182/686 (26%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L ++++P+ P + Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + + + IT++F + +V LQ Sbjct: 54 AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + S I+ D + ++ Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 DP++L T +S G Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQIVQISSGQLGGLPAVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++G Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + A L + S Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L++ ++ + ++ T +L+ G ++ G+V Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLISTIAVPVVLLGTFGVLAAFGLLDHTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 LS +A + + ++ + + +G + V Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++S++ + ++ F V G + M+K Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 +++ + Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q I+ Q + + +++ + + + + Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + + Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLISTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG+ + + ++ IG V+D +VV + + + +S R+ KS+ Sbjct: 378 GTFGVLAAFGLLDHTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M LPMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + + G + ++G + + PG S K Sbjct: 790 VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + + L Sbjct: 850 LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L ++ G+ ++ +LT IG S + +++ + ++ L+ + Sbjct: 907 GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814 ++ L V TS+A + V+P+A+ G + + G+V A +IF Sbjct: 964 EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018 >gi|330987791|gb|EGH85894.1| multidrug/solvent transporter [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1044 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ + F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + V+ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + V S S + +S N + L Sbjct: 778 RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGE 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + + + Sbjct: 1009 ITAVILAIFWVPLFFVSVSGLFKSKKK 1035 >gi|107021796|ref|YP_620123.1| preprotein translocase subunit SecD [Burkholderia cenocepacia AU 1054] gi|116688743|ref|YP_834366.1| preprotein translocase subunit SecD [Burkholderia cenocepacia HI2424] gi|254246282|ref|ZP_04939603.1| SecD/SecF/SecDF export membrane protein [Burkholderia cenocepacia PC184] gi|105891985|gb|ABF75150.1| protein-export membrane protein SecD [Burkholderia cenocepacia AU 1054] gi|116646832|gb|ABK07473.1| protein-export membrane protein SecD [Burkholderia cenocepacia HI2424] gi|124871058|gb|EAY62774.1| SecD/SecF/SecDF export membrane protein [Burkholderia cenocepacia PC184] Length = 673 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 162/516 (31%), Positives = 269/516 (52%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + RS L+ + I + +++ + ++F+D++ E+ + + + Sbjct: 160 ASDARSLLRDKNIRDGGVSRVEQSVVVNFSDAQTAEDARKVLAASITELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ GS RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKDVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608 Score = 41.2 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 29/124 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IGLL LPNF ++ ++V Sbjct: 3 RYPLWKYVVMVVALAIGLLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ----NKITLSFADSRFKENIADKVTL 117 ++ S L I + I + D+ + + D + Sbjct: 38 SGKATVKLDSTTLTQVESALASAQIKPDDVTFENTATSANIRVRLKDTDTQLRVKDLLQK 97 Query: 118 FLQG 121 L Sbjct: 98 SLNA 101 >gi|289648231|ref|ZP_06479574.1| multidrug/solvent tranporter [Pseudomonas syringae pv. aesculi str. 2250] Length = 1011 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 70/687 (10%), Positives = 184/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ K+ F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + V+ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666 Score = 74.7 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 13/243 (5%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + V S S + +S N + L Sbjct: 778 RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTSAPGYSSGE 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVA 808 + A Sbjct: 1009 ITA 1011 >gi|51103033|gb|AAT96179.1| SecD [Pseudomonas viridiflava] Length = 622 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 163/521 (31%), Positives = 271/521 (52%), Gaps = 40/521 (7%) Query: 35 FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 P+ + + LGLDL GG H +LEVD D ++ L++Y E+++ L+KE + S+ Sbjct: 112 TPNWLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL 171 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ N I L F D +E V + ++ + L+ Sbjct: 172 PQLGNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTPAK 223 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++LG TA Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F + + R+ VE + I+G + A A+FD +P V+ Sbjct: 284 LEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVN 341 Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304 I+ D G TR N+G+ + + + + Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKII 401 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + Q+ + +I+G + LA +LRAG L + EER +G LG+D+I KG Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 A + G++ + LF++ +Y +GL+A ++ N+++ LAL+SLLGATLTLP IAGIVL + Sbjct: 462 VDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTM 521 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ RIREE +V ++ GF RAY+ I D+N+T L+ +LF G G Sbjct: 522 GMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 91/250 (36%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 R + V + D + ++ L G + + + Sbjct: 374 TTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KG+ + + + ++I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 FNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 SEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 40.4 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVT-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALTDA----------GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|289677853|ref|ZP_06498743.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv. syringae FF5] Length = 1044 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 70/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ + F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + D G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPDEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + V+ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + A V S S S +S N + L Sbjct: 778 RMTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSSGD 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMNEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + + + Sbjct: 1009 ITAVILAIFWVPLFFVTVSGLFKSKQK 1035 >gi|160896286|ref|YP_001561868.1| preprotein translocase subunit SecF [Delftia acidovorans SPH-1] gi|160361870|gb|ABX33483.1| protein-export membrane protein SecF [Delftia acidovorans SPH-1] Length = 316 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 160/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS + ++ L T GL+ ++F GG + V + D Sbjct: 1 MEFFRIRKDIPFMKYALVLNAISFITFALAVFFLLTRGLHLSVEFTGGTVMEVAYTQTAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ VR + L D++ QNF ++ ++RL Q S AQ E V + + T Sbjct: 61 IAKVRDTVSKLGYSDVTVQNFGTSRDVMIRLPVQKDVSSAQQS--EQVLTALKKEDAEVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL+ G++ + + ++IY+ +RF+W F + A+ + D+ LGF Sbjct: 119 LRRTEFVGPQVGDELMHNGLMALGFVVLGIVIYLAMRFEWKFGVAAVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +A VL ++GYSVN+ VV++DR+R+ + + +S ++ID +I T+ Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LSTTEVIDHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + VL M +GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|66044478|ref|YP_234319.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. syringae B728a] gi|63255185|gb|AAY36281.1| SecD/SecF/SecDF export membrane protein:SecD export membrane protein [Pseudomonas syringae pv. syringae B728a] Length = 622 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 166/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F D +E V + Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKSFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVD 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + +F++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 R + V + D + ++ L G + + + Sbjct: 374 TTTYTRQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + I+I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.9 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|170703130|ref|ZP_02893946.1| protein-export membrane protein SecD [Burkholderia ambifaria IOP40-10] gi|170131963|gb|EDT00475.1| protein-export membrane protein SecD [Burkholderia ambifaria IOP40-10] Length = 673 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 160/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ I + ++ + ++F+D++ E+ + + + Sbjct: 160 ASDARALLRDRNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLAASVTELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ GS RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKEVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRSVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+++ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQVAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606 Score = 134 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQVAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608 Score = 41.2 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + + + ++ LD Sbjct: 3 RYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQ----VSSGKATVKLD------------ 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + L L S K F I + D+ + + D + L Sbjct: 47 -----STTLTQVESALASAQIKPDDITFENTASNANIRVRLKDTDTQLRVKDLLQKSLNA 101 >gi|237800022|ref|ZP_04588483.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022877|gb|EGI02934.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 622 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 166/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE + S+ Q+ N I L F D +E V + Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNAIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + +F++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 156 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + + Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + I+I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.9 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|307259394|ref|ZP_07541119.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306866330|gb|EFM98193.1| Protein-export membrane protein secD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 556 Score = 207 bits (526), Expect = 7e-51, Method: Composition-based stats. Identities = 163/523 (31%), Positives = 280/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 45 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 104 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD + V++ L ++ + E + Sbjct: 105 QYKAVKKGENFATVIEFADEETANKAIRYIR----RVHTALEAASISPTEISFSPSETGL 160 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 V S AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 161 VTS-------RDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 213 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DGN ++ K + G H+ + Sbjct: 214 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 272 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G ++T+ +GKP+A + Sbjct: 273 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 332 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 333 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 392 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +G+ A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 393 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 452 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 453 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 512 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 513 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 555 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F + A T L ++ T+G +L G Sbjct: 381 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 439 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 440 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 496 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 497 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 554 >gi|221214469|ref|ZP_03587440.1| protein-export membrane protein SecD [Burkholderia multivorans CGD1] gi|221165726|gb|EED98201.1| protein-export membrane protein SecD [Burkholderia multivorans CGD1] Length = 673 Score = 207 bits (526), Expect = 7e-51, Method: Composition-based stats. Identities = 160/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + RS L+ + I + ++ + ++F+D++ E+ + + + Sbjct: 160 AADARSLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLASSITELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQVPVLLKKDVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+++ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + I+ Y R K + Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608 Score = 41.6 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 29/124 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ ++V Sbjct: 3 RYPLWKYVVMVVALAIGFLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIADKVTL 117 ++ + L I + I + D+ + + D + Sbjct: 38 SGKATVKLDANTLTQVETALAAAQIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQK 97 Query: 118 FLQG 121 L Sbjct: 98 TLNA 101 >gi|167721141|ref|ZP_02404377.1| preprotein translocase subunit SecD [Burkholderia pseudomallei DM98] Length = 616 Score = 207 bits (526), Expect = 7e-51, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|161525835|ref|YP_001580847.1| preprotein translocase subunit SecD [Burkholderia multivorans ATCC 17616] gi|189349444|ref|YP_001945072.1| preprotein translocase subunit SecD [Burkholderia multivorans ATCC 17616] gi|160343264|gb|ABX16350.1| protein-export membrane protein SecD [Burkholderia multivorans ATCC 17616] gi|189333466|dbj|BAG42536.1| preprotein translocase SecD subunit [Burkholderia multivorans ATCC 17616] Length = 673 Score = 207 bits (526), Expect = 7e-51, Method: Composition-based stats. Identities = 160/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + RS L+ + I + ++ + ++F+D++ E+ + + + Sbjct: 160 AADARSLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLASSITELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQVPVLLKKDVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+++ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGSRKKLK 606 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + I+ Y R K + Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGSRKKLKSL 608 Score = 41.6 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 29/124 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ ++V Sbjct: 3 RYPLWKYVVMVVALAIGFLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIADKVTL 117 ++ + L I + I + D+ + + D + Sbjct: 38 SGKATVKLDANTLTQVETALAAAQIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQK 97 Query: 118 FLQG 121 L Sbjct: 98 TLNA 101 >gi|257094093|ref|YP_003167734.1| preprotein translocase subunit SecF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046617|gb|ACV35805.1| protein-export membrane protein SecF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 314 Score = 207 bits (526), Expect = 7e-51, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 165/302 (54%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS+L + ++ LF+ GL+ ++F GG + + ++ + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVISLLTFLLAVFFLFSRGLHLSVEFTGGTLIELNYSQAAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R L D S QNF ++ L+RL + TR+ E V + + P ++ Sbjct: 61 LEKLREGLGKAGYSDFSVQNFGSSQDVLIRLPLRA--DQNTTRIGESVLQALNAETPGAS 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL G + +++ I +++Y+ RF+W F++ AI + D+ LGF Sbjct: 119 LRRVEFVGPQVGKELAENGALALLLVVIGIVVYLAFRFEWRFSVSAIIANLHDVIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VVV+DR+R+ + ++ ++D +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVVFDRVRETFRK-VRGLTTPQVLDHAITSTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M ++GG + FA+ + GI SS+ +A+P+++++ R + Sbjct: 238 RTIITHGSTQMMVLSMLLFGGETLYYFALALTIGICFGIYSSVLVASPLVMWLGVSREQF 297 Query: 831 AR 832 R Sbjct: 298 VR 299 >gi|78065284|ref|YP_368053.1| preprotein translocase subunit SecD [Burkholderia sp. 383] gi|77966029|gb|ABB07409.1| SecD export membrane protein [Burkholderia sp. 383] Length = 674 Score = 207 bits (525), Expect = 7e-51, Method: Composition-based stats. Identities = 159/516 (30%), Positives = 269/516 (52%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ + I + ++ + ++F+D++ E+ + L + + Sbjct: 160 ASDARTLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLALSITELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ GS RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKEVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A F +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGF-DDHQRPSVNIRLDSAGGRSVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+D+N+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDANVLINERVREELRAGQPPQTAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDANVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQTAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + I+ Y R K + Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608 >gi|317052998|ref|YP_004119352.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea sp. At-9b] gi|316953325|gb|ADU72796.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea sp. At-9b] Length = 1046 Score = 207 bits (525), Expect = 7e-51, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 189/689 (27%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G + L + ++++P P + + + Sbjct: 8 RPIFAWVLAIIVMLAGGISIL-----KLPVEQYPDVAP-------------TSVQIRATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 LQ + + G+ S + ++TLSF + + +V Sbjct: 50 PGADATTLQNSVTQVIEQNMSGLDGLMYMSSTSDSSGTLQLTLSFENGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + + ++ D + + + D I Sbjct: 110 KLQLATPLLPQEVQQQGITVRKSSSVFFLVPGFVDDTGRMSMEDIADYVAANLKDPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L T + N G Sbjct: 170 NGVGDTTLFGSQ-YAMRIWLDPNKLNNYQLTPVDVMNMIETQNAQIAAGQLGGAPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I + Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGNILLKVNSDGSQVRLHDVARIERGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + A + T L+ + Sbjct: 276 NFVVKINGKPASALGIQLAAGANALDTANAIRAKIDELKPYFPQGLKVVYPYDTTPFISI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ Sbjct: 336 SIHEVVKTLFEAIVLVFLVMYLFLQSFRATLIPTIAVPVVLLGTFGILAAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLKPKAATRKSMGQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + I Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVLVALILTPALCVTILKPVKPGSHGQHRGLFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + +A R+ + + +L + ++ + + +G + Sbjct: 516 NRKFDQSAHHYTNSVARMLHRSGRYLLIYGVLVAGMAVLFMRLPTSFLPSEDQGVLATQA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + ++ L+ + + + + E V G +K Sbjct: 576 ILPAGATQERTQAVLDQVNDYYLKNEKNNVENVLTVNGFGFAGRGQNVGIAFIGLKDWSQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + K ++ +V Sbjct: 636 RPGEENKVDGIVSRAAKAFSNIMDGNVVA 664 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 80/203 (39%), Gaps = 8/203 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + A ++ +K + + + +T E+++ +++ + M +++ Sbjct: 301 DTANAIRAKIDELKPYFPQGLKVVYPYDTTPFISISIHEVVKTLFEAIVLVFLVMYLFLQ 360 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 + L + + + T G A FG N + ++ IG V+D +VV + + Sbjct: 361 ---SFRATLIPTIAVPVVLLGTFGILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV- 416 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 + + + KS+ + G V ++ +PMA +GGS F+I + Sbjct: 417 -ERVMAEEGLKPKAATRKSMGQIQGALVGIALVLSAVFVPMAFFGGSTGVIYRQFSITIV 475 Query: 803 FGIVVAASSSIFIAAPILLFIYD 825 +V++ ++ + + + I Sbjct: 476 SAMVLSVLVALILTPALCVTILK 498 Score = 64.3 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 70/194 (36%), Gaps = 7/194 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G A E + L + G + + + +S I + + + Sbjct: 828 GQPAAGKSSGEAMALMEQLAKQLPPGVGYDWTGMSYQERMTGEQAPALYALSLIVVFLCL 887 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L L G+ ++ V +LT IG S + +++ + Sbjct: 888 AALYESWSIPFSVMLVVPLGVFGALVATLLRGLNNDVYFVVGLLTTIGLSAKNAILIVEF 947 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + ++ + ++ L + TS+A + VLP+A+ G + Sbjct: 948 AKDQIEKEGKG--VVEATLEAARMRLRPILMTSLAFILGVLPLALSSGAGSGAQNAVGTG 1005 Query: 801 MAFGIVVAASSSIF 814 + G+V A +I+ Sbjct: 1006 VIGGMVAATLLAIY 1019 >gi|51102889|gb|AAT96039.1| SecD [Pseudomonas viridiflava] gi|51102918|gb|AAT96067.1| SecD [Pseudomonas viridiflava] gi|51102972|gb|AAT96119.1| SecD [Pseudomonas viridiflava] Length = 622 Score = 207 bits (525), Expect = 7e-51, Method: Composition-based stats. Identities = 163/521 (31%), Positives = 271/521 (52%), Gaps = 40/521 (7%) Query: 35 FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 P+ + + LGLDL GG H +LEVD D ++ L++Y E+++ L+KE + S+ Sbjct: 112 TPNWLRNIGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL 171 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 Q+ N I L F D +E V + ++ + L+ Sbjct: 172 PQLGNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTPAK 223 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++LG TA Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 + F + + R+ VE + I+G + A A+FD +P V+ Sbjct: 284 LEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVN 341 Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304 I+ D G TR N+G+ + + + + Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTFTKQMVNGVEKDVPVQTFKEDKKII 401 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 + Q+ + +I+G + LA +LRAG L + EER +G LG+D+I KG Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 A + G++ + LF++ +Y +GL+A ++ N+++ LAL+SLLGATLTLP IAGIVL + Sbjct: 462 VDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTM 521 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ RIREE +V ++ GF RAY+ I D+N+T L+ +LF G G Sbjct: 522 GMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 91/250 (36%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + D + ++ L G + + + Sbjct: 374 TTTFTKQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KG+ + + + ++I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 FNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 SEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 40.4 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVT-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALTDA----------GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|260773396|ref|ZP_05882312.1| protein-export membrane protein SecD [Vibrio metschnikovii CIP 69.14] gi|260612535|gb|EEX37738.1| protein-export membrane protein SecD [Vibrio metschnikovii CIP 69.14] Length = 606 Score = 207 bits (525), Expect = 7e-51, Method: Composition-based stats. Identities = 145/522 (27%), Positives = 264/522 (50%), Gaps = 34/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D + + + RS L+ E I Sbjct: 93 NLAPSTPRWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMERLVSQQEEAFRSELRDEKI 152 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++R + + + D+ E + + D + Sbjct: 153 RYRAIRSQADSVEIILRDAAQLEETRRLLEANHR--------DMNFTASDRDGRFLLVAK 204 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + + ++ ++A+EQ++ I+R R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 205 FTDARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEIL 264 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F +V G D DG +++ +V + G + A+++ Sbjct: 265 GATATLEFREVDATADLAAAAAGRVPAGSEIKLDRDGRPVVLKRRVILGGSSITDASSSA 324 Query: 262 DPKTHKPVVDISFDEMGARR-----------------FFEVTRDNIGKPLAVVLDGRVLT 304 D V E G++ + + + ++ + Sbjct: 325 DEYGRPQVNISLDSEGGSKMSAFSRNNIGKLMATVFAEYRDSGERTDDGRVILEKHEEVI 384 Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I G Sbjct: 385 NQATIQSALGRNFRITGINSAAEAQNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMG 444 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A + GL +++F + Y +GL+A+ ++ N++L + ++S++ AT+TLP IAGIVL Sbjct: 445 IQACIWGLFAVMIFTALYYRTFGLIANLALLTNLVLIIGIMSMIPGATMTLPGIAGIVLT 504 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ ERIREE R+ ++ ++ G++ A+STI D+NIT LI ++LF G G Sbjct: 505 VGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTG 564 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 A++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 565 AIKGFAVTLSIGILTSMFTAIIGTRCVVNLLYGGKRINKLSI 606 Score = 147 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 98/248 (39%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + + N ++ L R G + A + + Sbjct: 360 FAEYRDSGERTDDGRVILEKHEEVINQATIQSALGRNFRITGINSAAEAQNLALLLRAGA 419 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ +I +GP + ++ I GI I A++I+ + ++ F L A L+ ++ Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGLFAVMIFTALYYR-TFGLIANLALLTNL 478 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G ++ G L +A ++ +G +V+ V++++R+R+ ++ + + I + Sbjct: 479 VLIIGIMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRNPQQAIHQ 535 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ I+ + + G I FA+ ++ GI+ + ++I ++ + Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCVVNLL 595 Query: 824 YDWRAKNA 831 Y + N Sbjct: 596 YGGKRINK 603 >gi|332285323|ref|YP_004417234.1| preprotein translocase subunit SecF [Pusillimonas sp. T7-7] gi|330429276|gb|AEC20610.1| preprotein translocase subunit SecF [Pusillimonas sp. T7-7] Length = 311 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 155/302 (51%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + FMR IS+L I ++ + G + I+F GG + V V Sbjct: 1 MEFFRIHRTVPFMRHALVLNLISLLTFIAAVAFIVLKGFHLSIEFTGGTVMEVHYQESVQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR+ ++SL D QNF ++ ++RL + G + V + + + + Sbjct: 61 VDEVRTAIQSLGYTDFQVQNFGTSQDIMIRLPARDGQDAGAQS--QGVMQVLQQQHSDAE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL+ G++ ++ +LIY+ RF+W AL + D+ LGF Sbjct: 119 LRRVEFVGPQVGQELLHNGLMALLFVVAGILIYLAFRFEWKLALACAIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FALF EF+L+ +A VL ++GYSVN+ VVV DR+R+N + + ++ID SI + + Sbjct: 179 FALFQWEFSLSVLAGVLAVLGYSVNESVVVMDRIRENFRKQRK-MPVSEIIDLSITQNIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + +F++ + GI SS+F+AA + +++ R Sbjct: 238 RTIITHGSTQMMVLSMFFFGGPTLHNFSLALTIGIWFGIYSSVFVAAALSMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|240949467|ref|ZP_04753807.1| preprotein translocase subunit SecD [Actinobacillus minor NM305] gi|240296040|gb|EER46701.1| preprotein translocase subunit SecD [Actinobacillus minor NM305] Length = 604 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 163/523 (31%), Positives = 279/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + + GLDLRGG ++EVD + + D LR L+KE I Sbjct: 93 NLAPATPTWLTDIGGSPMKRGLDLRGGVRFLMEVDMKTAMEKQQESLQDALRLELRKEKI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FADS + V + + + E++ Sbjct: 153 QYKAVKKGENFATIIEFADSDAADKAVRYVKRMHTTLEASY-----------NSPTEVTF 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS + + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 202 ALSASGLSTTRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + + G+ D +++ K + G H+ + Sbjct: 262 LGATATLEFRLVNETVNAEAAARGIVPADSELQHTRDERPVVLKRKPALGGEHIID-ASA 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I D G + ++T+ +GK +A + Sbjct: 321 GKDERGLPQVSIKLDREGGDQMADMTKAAVGKAMATLYSEFKDSGRRDANGKVILEKHTE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER VGA LG+D++ Sbjct: 381 VINVATVNSRLGSQFQITGINSAAEAQNLAVLLRSGALIAPIVIVEERTVGASLGADNVQ 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L ++F +V Y +G+ A ++ +N+ILT+ L+SL+GATLT+P IAGIVL Sbjct: 441 KGMEAGMYGLILTIIFCLVYYKMFGIFASVALTVNMILTVGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +SV ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSVQQAISEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ L ++ISMFTAIS R ++ ++ K Sbjct: 561 GPVKGFAVTLALGVMISMFTAISGTRMLVNWVYGGNKRVKKLW 603 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 103/249 (41%), Gaps = 4/249 (1%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + D +N + + N + L G + A V + Sbjct: 358 YSEFKDSGRRDANGKVILEKHTEVINVATVNSRLGSQFQITGINSAAEAQNLAVLLRSGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I VG + + ++KG+ + I +I+ + +K F + A L +++ Sbjct: 418 LIAPIVIVEERTVGASLGADNVQKGMEAGMYGLILTIIFCLVYYKM-FGIFASVALTVNM 476 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 T+G +L G + +A ++ +G SV+ V++Y+R+++ ++ S + I + Sbjct: 477 ILTVGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSVQQAISEG 533 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 N +++ ++ L + G + FA+ +A G++++ ++I ++ ++Y Sbjct: 534 YNGAFTSIFDSNLTTILTSLVLYAVGTGPVKGFAVTLALGVMISMFTAISGTRMLVNWVY 593 Query: 825 DWRAKNARI 833 + ++ Sbjct: 594 GGNKRVKKL 602 >gi|170732041|ref|YP_001763988.1| preprotein translocase subunit SecD [Burkholderia cenocepacia MC0-3] gi|169815283|gb|ACA89866.1| protein-export membrane protein SecD [Burkholderia cenocepacia MC0-3] Length = 673 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 162/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + RS L+ + I + +++ + ++F+D++ E+ + + + Sbjct: 160 ASDARSLLRDKNIRDGGVSRVEQSVVVNFSDAQTAEDARKVLAASITELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ GS RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G L++ V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGSQAPVLLKKDVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608 Score = 41.2 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 29/124 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IGLL LPNF ++ ++V Sbjct: 3 RYPLWKYVVMVVALAIGLLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ----NKITLSFADSRFKENIADKVTL 117 ++ S L I + I + D+ + + D + Sbjct: 38 SGKATVKLDSTTLTQVESALASAQIKPDDVTFENTATSANIRVRLKDTDTQLRVKDLLQK 97 Query: 118 FLQG 121 L Sbjct: 98 SLNA 101 >gi|330973523|gb|EGH73589.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1044 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 68/687 (9%), Positives = 183/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKDAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ + F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + ++ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAIV 666 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + A V S S S +S N + L Sbjct: 778 RMTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEILGTPAPGYSSGD 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A T V + KK I T + E + + S + + + + ++ Sbjct: 838 AMTEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + + + Sbjct: 1009 ITAVILAIFWVPLFFVTVSGLFKSKQK 1035 >gi|24374630|ref|NP_718673.1| preprotein translocase subunit SecD [Shewanella oneidensis MR-1] gi|24349257|gb|AAN56117.1|AE015748_5 protein-export membrane protein SecD [Shewanella oneidensis MR-1] Length = 616 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 165/522 (31%), Positives = 283/522 (54%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + RS L++E I Sbjct: 104 NLAPATPKWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R I + F D+ + + D + + + + V Sbjct: 164 RYAGIRINAQGIEIKFRDAESLASAERFLKSRSN--------DMVFSDVSKGEDFALQAV 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S+ + QV A++Q++ IR R++++G+SE +QR G+ RI+++LPG QD +R +++L Sbjct: 216 MSETYLKQVKEEALQQNITTIRNRVNELGVSEPVVQRQGAERIIVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + FH V G + +G Q +++ +V ++G H+ GA +F Sbjct: 276 GATASIEFHMVDDKADANAAQAGRVPAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA---------------- 305 D + +P V I+ D G F VT+DNIGKP+A + + Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMLKIEEV 394 Query: 306 -PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 V G+ + + A LA +LRAG+L ++IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIASG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ + +VLFM++ Y +GL+A+ ++ +N+++ + ++S++ A LTLP IAG+VL Sbjct: 455 INAMLWSMGAVVLFMLIYYRAFGLIANIALTMNLVMIVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 IG+AVD N+L+ ERIR+E R +SV ++ G++ A+S+I DSNIT I ++LF G G Sbjct: 515 IGMAVDGNVLIYERIRDEIRAGRSVQQAIQEGYANAFSSIADSNITTFITALILFAVGSG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFTAI RA++ + K+++++ I Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKRIQTLSI 616 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 95/239 (39%), Gaps = 6/239 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S R+ S+++ I + + + + ++ + Sbjct: 376 DSGERNADGSVKMLKIEEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I +GP + E I GI ++ S A+++++ I ++ F L A L +++ +G Sbjct: 436 IVEERTIGPSLGAENIASGINAMLWSMGAVVLFMLIYYR-AFGLIANIALTMNLVMIVGV 494 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ IG +V+ V++Y+R+R ++ S + I + Sbjct: 495 MSMIPGAVLTLPGIAGMVLTIGMAVDGNVLIYERIRDEIRA---GRSVQQAIQEGYANAF 551 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWR 827 +++ FI+ L + G + FA+ + GI + ++I I+ R Sbjct: 552 SSIADSNITTFITALILFAVGSGAVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKR 610 >gi|58040825|ref|YP_192789.1| preprotein translocase subunit SecD [Gluconobacter oxydans 621H] gi|58003239|gb|AAW62133.1| Protein translocase subunit SecD [Gluconobacter oxydans 621H] Length = 513 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 193/524 (36%), Positives = 292/524 (55%), Gaps = 12/524 (2%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M + ++ + IC IG+L+ LPNFL +P +I LGLDLRGGS+L+L++ Sbjct: 1 MYYSRLRLLGVAGICLIGVLLCLPNFLRSPSPS-----LPWRQIHLGLDLRGGSYLLLQL 55 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + LQ D+ R L +G + +LSF E Sbjct: 56 DLKSLEHDRLQSLQDQARQTLLDRSLGYRDFARDDATASLSFMPRSDAE------RDAAL 109 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + + I + L + A+ QS+EI+R+RID G + + Sbjct: 110 KAMQSLPPVVPNEFTTSEKDGRIVLTLQHEAMLARAREAVAQSIEIVRRRIDATGAIDPS 169 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 I R G RI+++LPG DP R++ LLGTTA+++F + PN S +S Q Sbjct: 170 IAREGDDRIVVELPGVSDPERIKSLLGTTARLTFRLLAPNPSVAS-PGSTMLEDESVHTQ 228 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V+D V++ G L A A D ++ V + GA F VTR N+GK A+VLD Sbjct: 229 VAVQDHVDVDGTDLTNAGAVIDQQSGGWAVTFQLNSAGATAFANVTRANVGKRFAIVLDN 288 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 +V+ AP I I +G QI+G F +A LA +LRAG+LP L++VE+R +G LG+ S Sbjct: 289 KVIEAPNIINPITAGNGQITGGFDARSASDLALLLRAGALPAPLSVVEQRTIGPSLGAAS 348 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I+ G +++ GL+L++ FM++ YG++GL AD ++F N+IL +A+LSL ATLTLP +AG+ Sbjct: 349 IHAGVISLLTGLLLVIAFMVLFYGRFGLYADIALFANLILMVAILSLFQATLTLPGMAGM 408 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 +L +G+AVD+NIL+NERIREE ++ + +L GF RA TI DSN TA +A V+LF F Sbjct: 409 LLTLGMAVDANILINERIREEVKRGRGPLQALQAGFDRATGTIIDSNATAFLAHVMLFVF 468 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G G VR FA+T+ + I+ ++FT + + R +++ + K + Sbjct: 469 GTGPVRNFALTITIGIVTTLFTTLLLSRLLVVRWYALARPKELP 512 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 71/153 (46%), Gaps = 4/153 (2%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 +GP + I G++ ++ + ++ ++ + + F L A L ++ + +L Sbjct: 337 QRTIGPSLGAASIHAGVISLLTGLLLVIAFMVLFYG-RFGLYADIALFANLILMVAILSL 395 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 F L +A +L +G +V+ +++ +R+R+ +K + + G + Sbjct: 396 FQATLTLPGMAGMLLTLGMAVDANILINERIREEVK---RGRGPLQALQAGFDRATGTII 452 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++ AF++ + + V+G + +FA+ + GIV Sbjct: 453 DSNATAFLAHVMLFVFGTGPVRNFALTITIGIV 485 >gi|293607157|ref|ZP_06689499.1| protein-export membrane protein SecF [Achromobacter piechaudii ATCC 43553] gi|292814491|gb|EFF73630.1| protein-export membrane protein SecF [Achromobacter piechaudii ATCC 43553] Length = 311 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 153/302 (50%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ ++ + T G + I+F GG + V + Sbjct: 1 MEFFRIHRTIPFMRHALVLNIISLVTFALAVFFIITRGFHLSIEFTGGTVMEVNYAQTAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR + L D QNF ++ ++RL Q G + A E V + Sbjct: 61 LENVRGVVSKLGYSDFQVQNFGTSRDVMIRLPLQEGQTSATQS--ESVLAALKTADSSVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP+I +EL+ G++ +++ I +++Y+ RF+W FA+ + + D+ LGF Sbjct: 119 LRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGFRFEWKFAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +A VL ++GYSVN+ VV+ DR+R+N + Y ++I+ +I +T+ Sbjct: 179 FAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRK-ADVTEVINSAITQTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI SS+F+AA + +++ R Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPSLHYFAMALTIGIWFGIYSSVFVAAALAMWMGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 Score = 45.8 bits (106), Expect = 0.034, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 92/179 (51%), Gaps = 5/179 (2%) Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTL 402 + + VG +G + ++ G A++ ++ I++++ + K+ + + +V++ L Sbjct: 117 VELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGFRFEWKFAVAGVIANLHDVVIIL 176 Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAY 460 + +L +AG++ +G +V+ ++++ +RIRE RK + V ++ ++ Sbjct: 177 GFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKADVTEVINSAITQTI 236 Query: 461 S-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 S TI T ++ +LFF GG ++ FA+ + + I +++++ + A+ +++ + Sbjct: 237 SRTIITHGSTQMMVLAMLFF-GGPSLHYFAMALTIGIWFGIYSSVFVAAALAMWMGVKR 294 >gi|224437392|ref|ZP_03658363.1| preprotein translocase subunit SecF [Helicobacter cinaedi CCUG 18818] Length = 323 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 157/285 (55%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 F++ +G+ IS++ + S LL G N GIDF GG + + ++ L+ +R L Sbjct: 10 YDFVKYSSYGLVISLVLILASFMLLGVKGFNLGIDFAGGSVVQLQYSKDAPLAQIRELLA 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + S + G K ++ V + +++ + + ++ + VGP Sbjct: 70 KDERFKNSQVSEFGSKQEVLLKVPYIPTGVNENMAQDIIT--LLKPSGDFELRRLDSVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL + GIV + ++ +AM+IYI R++W F+L + L+ D+ G L G++FN Sbjct: 128 KVGDELKQNGIVALALALVAMMIYISFRYEWRFSLAGVLALMHDVIIVSGVVILVGVDFN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AA+LTLIGYS+ND ++++DR+R+ M L R +I+++++ TL R++ TS+ Sbjct: 188 LDVLAALLTLIGYSINDTIIIFDRIREQM-LIKRQKDMRYVINEAVSCTLSRTLLTSLTV 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 F VL + ++GG +I F++PM G++VA SSIF A + + Sbjct: 247 FFVVLTLYLFGGEIIVGFSLPMLVGVIVATCSSIFFAPRLAIMFG 291 >gi|117928547|ref|YP_873098.1| preprotein translocase subunit SecF [Acidothermus cellulolyticus 11B] gi|117649010|gb|ABK53112.1| protein translocase subunit secF [Acidothermus cellulolyticus 11B] Length = 414 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 74/312 (23%), Positives = 147/312 (47%), Gaps = 13/312 (4%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I+ F+ +S + + + L GL+ G++FKGG + ++ Sbjct: 9 HGLYTGQISFDFVGRWRRWFTLSAVVIVIGLIGLGVRGLHLGLEFKGGTEFTFP-DKGYS 67 Query: 591 LSVVRSNLESLQIGDISFQNFD--GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 S V + + D Q+ G ++Q + D A V++ + K+ Sbjct: 68 TSQVADVVSGAGVSDPVVQHLSRPGVGGATFQVQTKALDKSASDAVIKAITTKL---GVP 124 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + +T VG +++ K + +I+ +A+++Y+ + F+W A+ AI L+ D+ T+ Sbjct: 125 ADEVSTTTVGASWGKQITNKAVESLIVFLVAVVLYLTLFFEWKMAISAIIALLHDLIITV 184 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSIN 766 G +AL G + V +LT++GYS+ D VVV+D++R+N + + +++ + ++N Sbjct: 185 GIYALVGFDVTPATVIGLLTILGYSLYDTVVVFDKVRENTRGIAGGSRMTYSQAANLAVN 244 Query: 767 ETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 +TL RS+ TS+ A + V + G + A+ + G+ SSIF+A PIL Sbjct: 245 QTLVRSINTSVIALLPVASLLFVGAGLLGAGSLKDLALALFVGLATGTYSSIFVATPILT 304 Query: 822 FIYDWRAKNARI 833 + + + + Sbjct: 305 LLKEREPQFRAL 316 >gi|289628490|ref|ZP_06461444.1| multidrug/solvent tranporter [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868780|gb|EGH03489.1| multidrug/solvent transporter [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 1044 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 70/687 (10%), Positives = 184/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDFATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ K+ F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + V+ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L + + Q + L +++ + + + Sbjct: 258 SQVRLKDFATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 67.4 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + V S S + +S N + L Sbjct: 778 RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTSAPGYSSGE 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + + + Sbjct: 1009 ITAVILAIFWVPLFFVSVSGLFKSKKK 1035 >gi|198283823|ref|YP_002220144.1| protein-export membrane protein SecD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665217|ref|YP_002426460.1| protein-export membrane protein SecD [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248344|gb|ACH83937.1| protein-export membrane protein SecD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517430|gb|ACK78016.1| protein-export membrane protein SecD [Acidithiobacillus ferrooxidans ATCC 23270] Length = 594 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 186/505 (36%), Positives = 293/505 (58%), Gaps = 20/505 (3%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 S + P + ++LGLDLRGG +L+L VD D + LQ S LR+FL+ + Sbjct: 101 SQMSAEPDWLRSIGGKPVNLGLDLRGGVYLLLRVDTDAVIKHALQQDSGSLRTFLRHRNL 160 Query: 87 GVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++ + + ++ V L +SI Sbjct: 161 QYLAVNMTGPQSLAIEMENAAVAAQAQKAVAERYPDYAVVLQPHA-----------VLSI 209 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ A++Q++ +IR RID++G+SE IQR G+ I +QLPG QD R + + Sbjct: 210 SITPDAASKMKDDALQQAIVVIRNRIDELGVSEPVIQRQGADHIAVQLPGVQDTQRAKSI 269 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD-----GNQYLVEDKVEISGIHLNGATAN 260 +G+TA++ F V + + G + G Y++ ++G +L+ A+A Sbjct: 270 IGSTAQLEFKMVDDQANMTEALKGELPAGTALFYGVHGTPYVLYTNTVLTGRYLSNASAG 329 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320 D + + VV++SF+ G R F ++T N+GK +A++LD +V+TAPVI +AI G+AQI+ Sbjct: 330 VDNNSGQAVVNVSFNNEGTRIFGDLTTKNVGKRMAILLDNKVVTAPVIREAITEGRAQIT 389 Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380 G ++ A A LRAG+LP ++I EER VG LG DSI+ G A+V G+ +VLFM Sbjct: 390 GFSGLKDASNAAIELRAGALPAPVHISEERTVGPTLGQDSIHDGVMAVVFGMAFVVLFMT 449 Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440 + Y +GL+AD +I +N++ LA+LS++G TLTLP IAGIVL IGLAVD+N+LV ERIRE Sbjct: 450 LYYRAFGLIADVAILVNILAILAVLSIMGGTLTLPGIAGIVLKIGLAVDANVLVFERIRE 509 Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500 E R S ++D GF +A++TI DSNIT LIA +VLF FG GA++GFA+ + + ++ SM Sbjct: 510 ELRHGMSTRAAIDAGFKKAFATIVDSNITVLIAALVLFQFGTGAIKGFALVLTIGVITSM 569 Query: 501 FTAISIVRAMMIFIIRYKKMKSIDI 525 FTA + R ++ + ++++ + I Sbjct: 570 FTATMMSRGIIELALGKRRVQKLYI 594 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 86/179 (48%), Gaps = 4/179 (2%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I VGP + ++ I G++ V+ +++++ + ++ F L A ++++I L Sbjct: 414 HISEERTVGPTLGQDSIHDGVMAVVFGMAFVVLFMTLYYR-AFGLIADVAILVNILAILA 472 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ IG +V+ V+V++R+R+ ++ +S R ID + Sbjct: 473 VLSIMGGTLTLPGIAGIVLKIGLAVDANVLVFERIREELR---HGMSTRAAIDAGFKKAF 529 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V +++ I+ L + +G I FA+ + G++ + ++ ++ I+ R Sbjct: 530 ATIVDSNITVLIAALVLFQFGTGAIKGFALVLTIGVITSMFTATMMSRGIIELALGKRR 588 >gi|119945872|ref|YP_943552.1| protein-export membrane protein SecD [Psychromonas ingrahamii 37] gi|119864476|gb|ABM03953.1| protein-export membrane protein SecD [Psychromonas ingrahamii 37] Length = 620 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 159/520 (30%), Positives = 276/520 (53%), Gaps = 36/520 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + A+ + LGLDLRGG + ++EVD D+ V+ + +LR L+ E I + Sbjct: 110 PAWLEAIGAGPLKLGLDLRGGVYFLMEVDMDEAVSKAQEQMVQDLRGDLRTEKIRFRGIT 169 Query: 93 QIQN--KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 + + + ++F + ++ D + N + + V +SI +++ Sbjct: 170 KANSATGVLVTFTEQSILDSAIDYLK--------PNNPGYQFSESVDNGRYILSIEMTEQ 221 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 + +A++Q++ I+R R++++G++E +QR G+ RI++QLPG QD +R +++LG TA Sbjct: 222 KLQASKEYALQQNLTILRNRVNELGVAEPLVQRQGTDRIVVQLPGIQDTARAKEILGATA 281 Query: 211 KMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 + FH V + + G ++ DG +V+ ++ ++G H+ + Sbjct: 282 TLEFHAVDSETNINDALAGRLPSSSIVYKERDGRPVVVKKQIILTGNHIVD-AQSGSDDM 340 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------------VLTAPV 307 +P V IS D G T++NIGKP+A + + Sbjct: 341 GRPQVSISLDSQGGSMMSRFTKNNIGKPMATLFIEYLPTGKKKPNGKAIIEKREEVANVA 400 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 QA +I+G A LA +LRAG+L + IV+ER +G LG ++I G A Sbjct: 401 TIQAQLGRSFRITGLDNAAEAHNLALLLRAGALIAPIQIVQERTIGPSLGQENIDNGIKA 460 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGL 426 +V G++ +VLFM V Y K+G++A+ ++ N+++ + +S++ ATLTLP IAGIVL +G+ Sbjct: 461 MVYGMLAVVLFMFVYYRKFGVIANTALLFNIVMIIGFMSMIPGATLTLPGIAGIVLTVGM 520 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 AVD+N+L+ ERIREE +S+ ++ G+S A+STI D+NIT I ++LF G G ++ Sbjct: 521 AVDANVLIFERIREELAAGKSIQQAIHEGYSNAFSTIADANITTFITALILFAVGTGPIK 580 Query: 487 GFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDI 525 GFA+T+ + I SMFT+I RA++ +K + I Sbjct: 581 GFAVTLAIGIATSMFTSIFGTRAIVNAVWGGRNDIKKLSI 620 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 99/220 (45%), Gaps = 5/220 (2%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 + L R G A + + ++ I +GP + +E I GI ++ Sbjct: 403 QAQLGRSFRITGLDNAAEAHNLALLLRAGALIAPIQIVQERTIGPSLGQENIDNGIKAMV 462 Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYS 733 +A+++++++ ++ F + A T L+ +I +GF ++ G L +A ++ +G + Sbjct: 463 YGMLAVVLFMFVYYR-KFGVIANTALLFNIVMIIGFMSMIPGATLTLPGIAGIVLTVGMA 521 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 V+ V++++R+R+ + S + I + + ++ FI+ L + G Sbjct: 522 VDANVLIFERIREELAA---GKSIQQAIHEGYSNAFSTIADANITTFITALILFAVGTGP 578 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 I FA+ +A GI + +SIF I+ ++ R ++ Sbjct: 579 IKGFAVTLAIGIATSMFTSIFGTRAIVNAVWGGRNDIKKL 618 >gi|172059696|ref|YP_001807348.1| preprotein translocase subunit SecD [Burkholderia ambifaria MC40-6] gi|171992213|gb|ACB63132.1| protein-export membrane protein SecD [Burkholderia ambifaria MC40-6] Length = 673 Score = 207 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 159/516 (30%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ I + ++ + ++F+D++ E+ + + + Sbjct: 160 ASDARALLRDRNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLAASVTELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ GS RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKEVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRSVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+++ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608 Score = 40.8 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + + + ++ LD Sbjct: 3 RYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQ----VSSGKATVKLD------------ 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + L L S K F I + D+ + + D + L Sbjct: 47 -----STTLTQVESALASAQIKPDDITFENTASNANIRVRLKDTDTQLRVKDLLQKSLNA 101 >gi|323143765|ref|ZP_08078433.1| export membrane protein SecD [Succinatimonas hippei YIT 12066] gi|322416478|gb|EFY07144.1| export membrane protein SecD [Succinatimonas hippei YIT 12066] Length = 625 Score = 207 bits (525), Expect = 9e-51, Method: Composition-based stats. Identities = 153/528 (28%), Positives = 276/528 (52%), Gaps = 44/528 (8%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ M + + LGLDLRGG H ++EVD D+ + + RS L+ + Sbjct: 103 NLAPATPAWMRSLGMHPLKLGLDLRGGVHFLMEVDMDEAMRKMKTQLVSDFRSELRNADL 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + R + + ++F D+ ++ ++ + + IS Sbjct: 163 RLAGARTEGDDVVVTFRDAATRDAAEKLLSDHHRDFVFQSYD--------RDGRYFISAK 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++Q + ++ ++A++Q++ IIR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 215 MTQQKLSEIRTNAVDQNINIIRNRVNELGVAEPLVQRQGADRIVVELPGIQDTARAKEIL 274 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFL-----RDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V + M G D + ++E +V ++G H+ ++ Sbjct: 275 GATATLEFRLVDSSADLNAAMQGRVPAGTELHFDKNNYPVVLEKRVILTGDHIVD-ASSS 333 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR-------------------- 301 + +P V+IS D G T+DN+GK +A Sbjct: 334 SDENGRPQVNISLDSRGGSIMSAFTKDNVGKSMATNFIEYKVIPNEDENAPKAGEEGYKP 393 Query: 302 ------VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 + Q +I+G +++ A LA +LRAG+L + IVEER +G Sbjct: 394 RFEKVEQIINVATIQTRLGSNFRITGIDSVKEAHNLALLLRAGALIAPIQIVEERTIGPS 453 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTL 414 LG +I G A+ G++ + +FM++ Y +G +A+ ++ N++L + ++SL+ AT+TL Sbjct: 454 LGQQNIDSGMQAMFYGVLFLAVFMLIYYKAFGFIANLALIFNLVLIVGVMSLIPGATMTL 513 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P IAGIVL +G+AVD+N+L+ ERIREE R ++V S+++G+ RA++TI DSNIT I Sbjct: 514 PGIAGIVLTLGMAVDANVLIYERIREELRAGRTVQQSINLGYERAFATIADSNITTFITA 573 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 ++LF G G+V+GFA+ + + + SMFTA++ RA++ I + Sbjct: 574 LILFMVGTGSVKGFALVLMVGLASSMFTAVTACRAIVNIIWGGRPNLK 621 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 94/253 (37%), Gaps = 5/253 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + N + L G + + + Sbjct: 375 VIPNEDENAPKAGEEGYKPRFEKVEQIINVATIQTRLGSNFRITGIDSVKEAHNLALLLR 434 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 ++ I +GP + ++ I G+ + + + +++ I +K F A LI Sbjct: 435 AGALIAPIQIVEERTIGPSLGQQNIDSGMQAMFYGVLFLAVFMLIYYK-AFGFIANLALI 493 Query: 702 LDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 ++ +G +L G L +A ++ +G +V+ V++Y+R+R+ ++ + + Sbjct: 494 FNLVLIVGVMSLIPGATMTLPGIAGIVLTLGMAVDANVLIYERIREELRA---GRTVQQS 550 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 I+ +++ FI+ L + + G + FA+ + G+ + +++ I+ Sbjct: 551 INLGYERAFATIADSNITTFITALILFMVGTGSVKGFALVLMVGLASSMFTAVTACRAIV 610 Query: 821 LFIYDWRAKNARI 833 I+ R ++ Sbjct: 611 NIIWGGRPNLKKL 623 Score = 39.7 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 27/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L ++I +G ALPN + + G+H ++ Sbjct: 4 KFPLWKNLLIAVIILLGFFYALPNLYGEDPALQI----------------SGTH---GIE 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D V+ +Q L + I ++ + FA++ + D V L Sbjct: 45 VDSTVSSQVQTL-------LDGKNIKG-DYELENGQLLIRFANTNDQILAKDIVAKAL 94 >gi|223042003|ref|ZP_03612186.1| preprotein translocase subunit SecD [Actinobacillus minor 202] gi|223017201|gb|EEF15630.1| preprotein translocase subunit SecD [Actinobacillus minor 202] Length = 604 Score = 207 bits (525), Expect = 9e-51, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 278/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + + GLDLRGG ++EVD + + D LR L+KE I Sbjct: 93 NLAPATPTWLTDIGGSPMKRGLDLRGGVRFLMEVDMKTAMEKQQESLQDALRLELRKEKI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FADS + V + + + E++ Sbjct: 153 QYKAVKKGENFATIIEFADSDAADKAVRYVKRMHTTLEASY-----------NSPTEVTF 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 202 ALSATGLSTTRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + + G+ D +++ K + G H+ + Sbjct: 262 LGATATLEFRLVNETVNAEAAARGIVPADSELQHTRDERPVVLKRKPALGGEHIID-ASA 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I D G + ++T+ +GK +A + Sbjct: 321 GKDERGLPQVSIKLDLEGGDQMADMTKAAVGKAMATLYSEFKDSGRRDANGKVILEKHTE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER VGA LG+D++ Sbjct: 381 VINVATVNSRLGSQFQITGINSAAEAQNLAVLLRSGALIAPIVIVEERTVGASLGADNVQ 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L ++F +V Y +G+ A ++ +N+ILT+ L+SL+GATLT+P IAGIVL Sbjct: 441 KGMEAGMYGLILTIIFCLVYYKMFGIFASVALTVNMILTVGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +SV ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSVQQAISEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ L ++ISMFTAI+ R ++ ++ K Sbjct: 561 GPVKGFAVTLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 103/249 (41%), Gaps = 4/249 (1%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + D +N + + N + L G + A V + Sbjct: 358 YSEFKDSGRRDANGKVILEKHTEVINVATVNSRLGSQFQITGINSAAEAQNLAVLLRSGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I VG + + ++KG+ + I +I+ + +K F + A L +++ Sbjct: 418 LIAPIVIVEERTVGASLGADNVQKGMEAGMYGLILTIIFCLVYYKM-FGIFASVALTVNM 476 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 T+G +L G + +A ++ +G SV+ V++Y+R+++ ++ S + I + Sbjct: 477 ILTVGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSVQQAISEG 533 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 N +++ ++ L + G + FA+ +A G++++ ++I ++ ++Y Sbjct: 534 YNGAFTSIFDSNLTTILTSLVLYAVGTGPVKGFAVTLALGVMISMFTAITGTRMLVNWVY 593 Query: 825 DWRAKNARI 833 + ++ Sbjct: 594 GGNKRVKKL 602 >gi|326329827|ref|ZP_08196147.1| protein-export membrane protein SecF [Nocardioidaceae bacterium Broad-1] gi|325952413|gb|EGD44433.1| protein-export membrane protein SecF [Nocardioidaceae bacterium Broad-1] Length = 412 Score = 207 bits (525), Expect = 9e-51, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 136/316 (43%), Gaps = 10/316 (3%) Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 S L + F+ R S + + + ++ G+N GIDF GG + Sbjct: 2 SKFSFSRLGKELYTGEKSFDFVGRRMVWYAASGVVLVAVVLGVWLQGINLGIDFTGGTRY 61 Query: 582 GVLANRPVD--LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 V + +R+ + + + + ++ + ++ +++ Sbjct: 62 TVTVAQADQKLADDLRTAVGDTAVEAADGATVRTSGSKSIVIETKAIADNSKADD-SIME 120 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698 + +GP + + K + + I + ++++IWI F+ W ++ A+ Sbjct: 121 AITKTADVAEDDVSRTGIGPSWGQRVASKAGLALGIFLVGVVLFIWIYFREWKMSVAAVV 180 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISF 757 L D+ T+G +A+ G E V LT++GYS+ D VVV+D++++N + + ++ Sbjct: 181 ALAHDVVITVGVYAIVGFEVTPATVTGFLTILGYSLYDTVVVFDKVKENTRNLSQKKQTY 240 Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSS 812 + +IN+TL RSV TS+ + V+ + G S + ++ + G+ V SS Sbjct: 241 ASAANLAINQTLVRSVNTSIIGLLPVVAILYVSTVQLGTSSLKDISLVLFVGMAVGTYSS 300 Query: 813 IFIAAPILLFIYDWRA 828 IFIA P+L+ + Sbjct: 301 IFIATPLLVHLKSKEK 316 >gi|297539528|ref|YP_003675297.1| protein-export membrane protein SecF [Methylotenera sp. 301] gi|297258875|gb|ADI30720.1| protein-export membrane protein SecF [Methylotenera sp. 301] Length = 322 Score = 207 bits (525), Expect = 9e-51, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 164/297 (55%), Gaps = 3/297 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+G+DF GG + V + + Sbjct: 1 MELFRIKKDIPFMSYGRLTTAISLVTFILAVVFLATRGLNFGVDFTGGTVMEVNYPQAAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR ++S+ + + + QNF + L+RL + G SVA ++ E VK + + Sbjct: 61 LESVRKAVDSIGLKEATVQNFGSSHDVLIRLPVKTGVSVA--KLSEEVKAALVAADSTAE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VG ++ EL G + + ++ +++Y+W+RF+W FA+ AI + D+ LGF Sbjct: 119 VRRVEAVGAQVGDELYENGGLALFFVSLGIMLYLWLRFEWRFAVAAIIANMHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EFNLT +AA+L ++GYSVN+ VVV+DR+R+N + S +ID +I T+ Sbjct: 179 FAFFQWEFNLTVLAAILAVLGYSVNESVVVFDRVRENFRKMRK-ASVVQVIDNAITRTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 R++ T V M ++GG V+ +FA+ + GI+ SS+ +A PI +++ R Sbjct: 238 RTIITHTMTQTMVGSMLLFGGEVLHNFALALTIGILFGIYSSVLVACPIAMWLGVNR 294 >gi|317128215|ref|YP_004094497.1| protein-export membrane protein SecF [Bacillus cellulosilyticus DSM 2522] gi|315473163|gb|ADU29766.1| protein-export membrane protein SecF [Bacillus cellulosilyticus DSM 2522] Length = 308 Score = 207 bits (525), Expect = 9e-51, Method: Composition-based stats. Identities = 80/305 (26%), Positives = 144/305 (47%), Gaps = 9/305 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + + F++ R S + + LL T GLN GIDF+ G + VL+N V Sbjct: 1 MNFDHEETKLDFVKHRKKFFVFSGTLLLLGVVLLATLGLNLGIDFRSGTTVDVLSNDSVT 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +++ E++ + V +++ Sbjct: 61 TAEIQAEFEAIGFEPDDITIAGNNNEIGRAVFIGGLTQDEGLAVQSHFEERYE------N 114 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 V P + EL R I+ V+I+A+ ++IY+ IRF++ + + AI L D L Sbjct: 115 RPTVNTVTPMVGEELARNAIISVLIAAVGIIIYVTIRFEFLYGISAIVALFHDALFILVV 174 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINE 767 F++ +E N+ +AAVLT++GYS+ND +V +DR+R+NM +F D +++KS+ + Sbjct: 175 FSILQMEVNIPFIAAVLTIVGYSINDTIVTFDRIRENMSYEKKVKNFDDVARVVNKSLVQ 234 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL RS+ T + + + V+GG + +F+ + G+V SS+FIAA + L + + Sbjct: 235 TLARSINTVLTVVFAAGALFVFGGEALRTFSFALVVGLVAGTYSSLFIAAQLWLVLKSRQ 294 Query: 828 AKNAR 832 + Sbjct: 295 LAKKK 299 >gi|118594456|ref|ZP_01551803.1| protein-export membrane protein SecD [Methylophilales bacterium HTCC2181] gi|118440234|gb|EAV46861.1| protein-export membrane protein SecD [Methylophilales bacterium HTCC2181] Length = 631 Score = 207 bits (525), Expect = 9e-51, Method: Composition-based stats. Identities = 157/526 (29%), Positives = 279/526 (53%), Gaps = 28/526 (5%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L+ P++L + LGLDLRGG H ++++D Sbjct: 100 VVALNLISNSPSWLTGIGA---------LPMYLGLDLRGGVHFLMQLDLSKVSEKKSDGL 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF---LQGVNSKLNVDP 130 + R L+ E + F+ ++I + I + F + D + ++ Sbjct: 151 LQDTRKLLRDEKVKYFASKKIGDTIEIKFRSADALSKAKDIIRSQGGGRGIFGGSISKTT 210 Query: 131 KKNLLVTTTEKEISIVLS---QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187 + + I+L + + +S A++Q++E + R++++G++E IQ+ G Sbjct: 211 EAYEFSEINNTDEFILLVKNNDISNEDTVSFALKQNLETLNNRVNELGVAEPIIQQQGKD 270 Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF---------MFGVRFLRDSDG 238 RI++QLPG QD ++ ++++G TA + V + S G +D G Sbjct: 271 RIVVQLPGVQDTAKAKEIIGRTAILEMRIVDEDQSSPENLETLNPDNLPLGTELYKDRFG 330 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 N LV+ + ++G + A D +T + +V I+ D GA F +VTR+N+GK +A++L Sbjct: 331 NPILVKKDIILTGERIINAGPGVDQQTGQSIVSITLDSAGANIFKQVTRENVGKRIALLL 390 Query: 299 DGRV----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 + +TAPVI I G+ QI+G + A +A +LRAGSL + IVEER VG Sbjct: 391 IEKNITEVITAPVIKSEIGGGRVQITGMRNAQEATDVALLLRAGSLATPMEIVEERTVGP 450 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414 +G ++I +G + + G + I + M Y +G+++ + +N++ +ALLS++ ATLTL Sbjct: 451 SMGKENIARGINSTIWGFLAIAIMMASYYMLFGVISVIGLSVNLLFLVALLSVIQATLTL 510 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 P +A I L +G+A+D+N+L+NERIR+E R + S+ +G+ +A+ TI DSNIT +IA Sbjct: 511 PGLAAIALTLGMAIDANVLINERIRDELRNGNTPQASIKIGYEKAWGTILDSNITTMIAG 570 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 + LF FG G ++GFA+ L I+ SM++AI + R+++ +I ++ Sbjct: 571 IALFMFGSGPIKGFAVVHVLGIITSMYSAIWVSRSIVNYIYGSRRK 616 Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 90/201 (44%), Gaps = 4/201 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 AQ + + + I VGP + +E I +GI I +A+ I + + Sbjct: 420 NAQEATDVALLLRAGSLATPMEIVEERTVGPSMGKENIARGINSTIWGFLAIAIMMASYY 479 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 F + ++ L +++ + ++ L +AA+ +G +++ V++ +R+R + Sbjct: 480 -MLFGVISVIGLSVNLLFLVALLSVIQATLTLPGLAAIALTLGMAIDANVLINERIRDEL 538 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + + + I + G + +++ I+ + + ++G I FA+ GI+ + Sbjct: 539 R---NGNTPQASIKIGYEKAWGTILDSNITTMIAGIALFMFGSGPIKGFAVVHVLGIITS 595 Query: 809 ASSSIFIAAPILLFIYDWRAK 829 S+I+++ I+ +IY R K Sbjct: 596 MYSAIWVSRSIVNYIYGSRRK 616 >gi|118617350|ref|YP_905682.1| preprotein translocase subunit SecF [Mycobacterium ulcerans Agy99] gi|183982135|ref|YP_001850426.1| protein-export membrane protein SecF [Mycobacterium marinum M] gi|118569460|gb|ABL04211.1| protein-export membrane protein SecF [Mycobacterium ulcerans Agy99] gi|183175461|gb|ACC40571.1| protein-export membrane protein SecF [Mycobacterium marinum M] Length = 446 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 67/296 (22%), Positives = 131/296 (44%), Gaps = 11/296 (3%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 R GIS +I + G +GIDFKGG + V + Sbjct: 64 GRRKLWYGISGAIMAIAILSIIVRGFTFGIDFKGGTTVSFPRGDSQVTQVEEVFHNVVGS 123 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659 S + V+++ + + ++ + + P + V Sbjct: 124 DPESVVTVGSGASATVQIRSETLSNEQTEKLRDALFDAFHPKGADGKPSKKAISDAAVSE 183 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ +K ++ +++ + + IYI +R++ Y + AI +I D+T T G ++L G E Sbjct: 184 TWGGQITKKAVIALVVFLVLVAIYITVRYERYMTISAIAAMIFDLTVTAGVYSLVGFEVT 243 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777 V +LT++G+S+ D V+V+D++ +N +TT +F + + ++N+T RS+ TS+ Sbjct: 244 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAVNQTFMRSINTSL 303 Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + + VL + + G + A+ GI+V SSIF A P+L+ + + Sbjct: 304 ISVLPVLSLMVVAVWLLGVGTLKDLALVQLIGIIVGTYSSIFFATPLLVTLRERTE 359 >gi|32267147|ref|NP_861179.1| preprotein translocase subunit SecF [Helicobacter hepaticus ATCC 51449] gi|32263200|gb|AAP78245.1| preprotein translocase subunits SecF [Helicobacter hepaticus ATCC 51449] Length = 323 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 155/285 (54%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 F+ +G+ IS L I S LL G N GIDF GG + + +P LS +R L Sbjct: 10 YDFVTYSSYGLVISTLLIIASFVLLGIKGFNLGIDFAGGSIVQIQYTKPAPLSKIRELLA 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + S + G K ++ SV + +V + E ++ + VGP Sbjct: 70 QDERFKNSQVSEFGSKEEVLLKIPYIPTSVNEDISHSIV--ALLEPSGHFELRRVDSVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL + GI+ + + IAM+IYI R++W F+L + L+ D+ G L G++FN Sbjct: 128 KVGDELKQNGIIALTFALIAMMIYISFRYEWRFSLAGVLALVHDVIIVSGVVILAGVDFN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AA+LT+IGYS+ND ++++DR+R+ M + + +I+++++ TL R++ TS+ Sbjct: 188 LDVLAALLTIIGYSINDTIIIFDRIREQM-MIKRQKDMKYVINEAVSCTLSRTILTSLTV 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 F VL + ++GG +I F++PM G+++A SS+F+A + L Sbjct: 247 FFVVLTLYLFGGEIIVGFSLPMLVGVIIATCSSMFVAPRLALMFG 291 >gi|296104104|ref|YP_003614250.1| aminoglycoside/multidrug efflux system [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058563|gb|ADF63301.1| aminoglycoside/multidrug efflux system [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1037 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G+L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGVLAI-----TSLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLSFTAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPNKLNSFQMTATDVTDAIKSQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L V Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAQLVLDRLDELSHYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRQATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCVTLLKPLHKGEQHGQKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W + +L L + +G V Sbjct: 516 NRMFNRSAARYETAVGKVLHRSLRWMMIYVVLLGGMVWLFLHLPTSFLPQEDRGMFITSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVQKVEQYFFTKEKDNVVSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K + + Sbjct: 636 RDTKTGTSFAIIERATKAFSRIKEARVFA 664 Score = 81.7 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ +++ P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATAQLVLDRLDELSHYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + +S R KS+ + Sbjct: 380 FAVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRQATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCVTLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 82/269 (30%), Gaps = 13/269 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 D + A V S S+ + N + Sbjct: 776 PYRMLPDDINRWYVRNNAGGMVPFSAFASSHWESGSPRLERYNGYSAVEIVGEAAPGVST 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + ++V++ T + + + + S + + + + Sbjct: 836 GTAMDTMEKLVQQLPAGFGLQWTAMSYQERLSGAQAP----ALYAL--SLLVVFLCLAAL 889 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W + + L + L + G+E ++ +LT+IG S + +++ + + Sbjct: 890 YESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE 949 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803 + + + L + TS+A VLPMA G+ + + Sbjct: 950 ---MNAKGHELMASTLHACRQRLRPILMTSLAFVFGVLPMATSSGAGSSSQHAVGTGVMG 1006 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G++ A +I+ + + R Sbjct: 1007 GMISATILAIYFVPLFFVLVRRRFPLKER 1035 >gi|329120264|ref|ZP_08248932.1| protein-export membrane protein SecF [Neisseria bacilliformis ATCC BAA-1200] gi|327462605|gb|EGF08928.1| protein-export membrane protein SecF [Neisseria bacilliformis ATCC BAA-1200] Length = 311 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 95/304 (31%), Positives = 171/304 (56%), Gaps = 3/304 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM+ IS+ I ++ L T GLNY ++F GG + V + D Sbjct: 1 MELFRFKRDIPFMKYGRLTTFISLATFILAVFFLATKGLNYSVEFTGGTVMEVEYAQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR +L++L +G++ Q + ++ ++RL +PG + AQ + + + + +T Sbjct: 61 VDKVRGSLDALNLGEVQVQTVNSNRHLMIRLPNKPGTTTAQ--LSNQTMEILKKNDASAT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + + ++IY+ +RF+W FA+ AI + D+ LG Sbjct: 119 LRQVEFIGPQVGDELVHNGLIALGMVVAGIIIYLSMRFEWRFAVSAIIANMHDVVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FALF EF+LT +A VL ++GYSVN+ VVV+DR+R+N + + + ++ID +I T+ Sbjct: 179 FALFQWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENFRKPNMRNHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M ++GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLLFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLLFGLSREN 298 Query: 830 NARI 833 AR+ Sbjct: 299 IARV 302 >gi|262042088|ref|ZP_06015264.1| inner membrane multidrug efflux protein BpeB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040569|gb|EEW41664.1| inner membrane multidrug efflux protein BpeB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 1037 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 81/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLNNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQMTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDAATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W + +L L ++ +G V Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ + ++ + + E F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDPQTGTSFAIIERATKAFNQINEARVIA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 85/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L + + D + + L + +A + ++ + P Sbjct: 260 VTLGDAATVEMGAEKYDYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 67.4 bits (162), Expect = 8e-09, Method: Composition-based stats. Identities = 31/253 (12%), Positives = 74/253 (29%), Gaps = 9/253 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + + G + ++G + + PG S + Sbjct: 789 VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ + + + W + + L Sbjct: 849 LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L + +E ++ +LT+IG S + +++ + + L Sbjct: 906 GVIGALLATWMRELENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 + + L + TS+A VLPMA G + + G++ A +IF Sbjct: 963 SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022 Query: 820 LLFIYDWRAKNAR 832 + + R Sbjct: 1023 FVLVRRRFPLKER 1035 >gi|115350664|ref|YP_772503.1| preprotein translocase subunit SecD [Burkholderia ambifaria AMMD] gi|115280652|gb|ABI86169.1| protein-export membrane protein SecD [Burkholderia ambifaria AMMD] Length = 673 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 159/516 (30%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ I + ++ + ++F+D++ E+ + + + Sbjct: 160 ASDARALLRDRNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLAASVTELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ GS RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ +V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKEVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRSVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+++ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608 Score = 40.8 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + + + ++ LD Sbjct: 3 RYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQ----VSSGKATVKLD------------ 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + L L S K F I + D+ + + D + L Sbjct: 47 -----STTLTQVESALASAQIKPDDITFENTASNANIRVRLKDTDTQLRVKDLLQKSLNA 101 >gi|71282618|ref|YP_267865.1| preprotein translocase subunit SecD [Colwellia psychrerythraea 34H] gi|71148358|gb|AAZ28831.1| protein-export membrane protein SecD [Colwellia psychrerythraea 34H] Length = 615 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 158/520 (30%), Positives = 278/520 (53%), Gaps = 38/520 (7%) Query: 33 DRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89 PS + + LGLDL GG ++EV+ + +N + R L+ E I Sbjct: 107 PNTPSWLAAIGGKPMKLGLDLSGGVSFLMEVNMKEAINKAKIGMVSDFRGDLRNEKIRYR 166 Query: 90 SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149 S++++ N + + F E + + + L ++ +++ Sbjct: 167 SVKEVNNSVVVVFRKIEDLEAGQSLLKQRYRDLL----------LSTDDDTLTLTAKMTE 216 Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209 + ++ +A++Q++ IIR R++++G++E +QR G I+I+LPG QD ++ +++L T Sbjct: 217 PKLKEIREYALQQNITIIRNRVNELGVAEPLVQRQGKKHIVIELPGVQDTAKAKEILNAT 276 Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATANFDPK 264 A + F V + G D DG L++ ++ ++G H+ A + FD Sbjct: 277 ATIEFRLVDTEGDLSNALNGRIPANSILLTDKDGRPSLLKKRIMLTGDHITDAKSGFDEY 336 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------LTAP 306 + +P V+IS D G + T+ NIGKP+A V + + Sbjct: 337 S-RPQVNISLDSAGGSKMSSGTKSNIGKPMATVFIEYKATDKKDAEGNIIFEKQQEIISV 395 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ +I+G + A LA +LRAG+L + IVEER VG LG++++ G Sbjct: 396 ATIQSRLGKTFRITGAGSAAEAHNLALLLRAGALIAPITIVEERTVGPTLGAENVRLGFE 455 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIG 425 AI+ G L+ +FM++ Y +G+VA+ ++ N++L + ++S++ ATLTLP +AGIVL +G Sbjct: 456 AILMGFGLVFIFMMIYYRAFGVVANLALGANLVLIVGVMSMIPGATLTLPGMAGIVLTVG 515 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +AVD+N+L+ ERIREE R+ +++ S+ G+ A+STI D+NIT LIA ++LF G G V Sbjct: 516 MAVDANVLIFERIREEIREGKTIQQSIHQGYDAAFSTIIDANITTLIAALILFAIGTGPV 575 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +GFA+T+ + I+ SMFT++ RA++ I K+++ + I Sbjct: 576 KGFAVTLSIGIITSMFTSVVGTRAVVNAIWGGKRLEKLPI 615 Score = 147 bits (369), Expect = 9e-33, Method: Composition-based stats. Identities = 43/327 (13%), Positives = 113/327 (34%), Gaps = 6/327 (1%) Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 + A+ I + + S A+ S S+ Sbjct: 290 LSNALNGRIPANSILLTDKDGRPSLLKKRIMLTGDHITDAKSGFDEYSRPQVNISLDSAG 349 Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 ++ G G + + + + + ++ L + Sbjct: 350 GSKMSSGTKSNIGKPMATVFIEYKATDKKDAEGNIIFEKQQEIISVATIQSRLGKTFRIT 409 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 G A + + ++ TI VGP + E +R G +++ + I++ Sbjct: 410 GAGSAAEAHNLALLLRAGALIAPITIVEERTVGPTLGAENVRLGFEAILMGFGLVFIFMM 469 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 I ++ F + A L ++ +G ++ G L +A ++ +G +V+ V++++R+ Sbjct: 470 IYYR-AFGVVANLALGANLVLIVGVMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERI 528 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + + I + + + ++ I+ L + G + FA+ ++ G Sbjct: 529 REEIRE---GKTIQQSIHQGYDAAFSTIIDANITTLIAALILFAIGTGPVKGFAVTLSIG 585 Query: 805 IVVAASSSIFIAAPIL-LFIYDWRAKN 830 I+ + +S+ ++ R + Sbjct: 586 IITSMFTSVVGTRAVVNAIWGGKRLEK 612 Score = 40.8 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ +MI IG L A P +S + LRG +E + Sbjct: 4 KYPLWKTLMVAMIVAIGALYATPMLYGESPAVQVSG------------LRG-----VEAN 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D +++ L++ + S+ ++ F ++ + D + L Sbjct: 47 AA---------TLDSIKAQLEESNLSFASIALENGQVLTRFNNTEDQLKARDVLDDNL 95 >gi|156935043|ref|YP_001438959.1| preprotein translocase subunit SecD [Cronobacter sakazakii ATCC BAA-894] gi|156533297|gb|ABU78123.1| hypothetical protein ESA_02894 [Cronobacter sakazakii ATCC BAA-894] Length = 604 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 170/538 (31%), Positives = 286/538 (53%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 88 FVVALNLAPATPRWLTAISAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 138 Query: 73 YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+++G+ ++R+ N +T+ F DS ++ +T + Sbjct: 139 NMDSLRSDLREKGLSWTNVRKADNYGVTIQFRDSDIRDAAVSYLTSRHR----------- 187 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 ++ + + + V+S + + +A++Q++ I+R R++Q+G++E +QR G+ RI++ Sbjct: 188 DMVISSQGDNSLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 247 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V + + G +G ++ + Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNSSVDRSAAAAGRVPGDSEVKMTREGQPVVLYKR 307 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T+ D V+IS D G T+DNI KP+A + + Sbjct: 308 VILTGDHITDSTSGVDQYNMPQ-VNISLDSAGGNIMSNFTKDNIHKPMATLFVEYKDSGK 366 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 QA I+G A L+ +LRAG+L + IVE Sbjct: 367 KDANGRSILVKQEEVINVATIQARLGQNFVITGIDNPNEARQLSLLLRAGALIAPIQIVE 426 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A +AGL + +LFMI+ Y K+GL+A ++ N++L + ++SLL Sbjct: 427 ERTIGPTLGMQNITQGLEACLAGLAVSILFMILFYKKFGLIATTALLANLVLIVGIMSLL 486 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE +SV ++D G+ A+S+IFD+N Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDAN 546 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T LI ++L+ G GA++GFAIT G+ + SMFTAI RA++ + K++ + I Sbjct: 547 VTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 132 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 77/177 (43%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + ++++ + +K F L A T L+ ++ +G +L Sbjct: 429 TIGPTLGMQNITQGLEACLAGLAVSILFMILFYK-KFGLIATTALLANLVLIVGIMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ + + S + ID+ Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYRGAFSSIFD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI G+ + ++I I+ +Y + N Sbjct: 545 ANVTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINK 601 >gi|73537922|ref|YP_298289.1| hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134] gi|72121259|gb|AAZ63445.1| Hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134] Length = 1050 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 73/686 (10%), Positives = 180/686 (26%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L + ++P+ P + Sbjct: 8 RPIFAWVIALVIMLAGVLSI-----RSLPISQYPAIAPPTI---------AISVNYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + L + + IT++F + +V L Sbjct: 54 AETVQDTVVQVIEQQLNGLDRLRYISSESNADGSMTITVTFEQGTNPDIAQVQVQNKLAL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T +++ + S I+ D + + Sbjct: 114 AQPLLPQEVQQQGIRVTKSVRNFLLIVGLISTDPKVTREDLSNYIVSNIQDPLSRTYGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T +S N G Sbjct: 174 DFQVFGSQ-YAMRVWIDPAKLNSYQLTPLDVSNAIKAQNVQVASGQLGGLPAVQGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V K + + + + + +G Sbjct: 233 SVIGKTRL-------------QTSEQFGNILLKVNPDGSQVRLKDVAEVGLGGQDYNINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + A + T+ L + GS Sbjct: 280 QYNGQPASGIAVRLAAGANALETVRAIRKTLDTLEPFFPAGMKVVYPYDTSPVISGSIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVKTLMEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGYTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEAARRSMGQIQGALVGIAMVLSAVFLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ S+++S+ A+ + A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVLVALILTPALCATMLQPIEKGDHGENKGGFFGWFNRK 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 +S ++ R + + + + +G + V Sbjct: 520 FISTTQGYERGVSTILKRRLPFVLIYVAILVAMGFLFTRIPTSFLPEEDQGVLYAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L ++ + + + F V G ++K Sbjct: 580 AGATAERTQKVLVQMREYLLKEEGGVVDSLFTVNGFNFAGRGQNSGLAFILLKPWEERTG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 +++ + + Sbjct: 640 DNTSVFDLAARAQRKFASFRDSMSFA 665 Score = 79.3 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q +I+ Q + + +++ R + + Sbjct: 258 SQVRLKDVAEVGLGGQDYNINAQYNGQPASGIAVRLAAGANALETVRAIRKTLDTLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + + + + +++ + + L + + + Sbjct: 318 PAGMKVVYPYDTSPVISGSIHEVVKTLMEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + + ++ +S+ Sbjct: 378 GTFGVLAAFGYTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEAARRSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M LPMA +GGS F+I + +V++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSSMVLSVLVALILTPAL 492 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 33/253 (13%), Positives = 76/253 (30%), Gaps = 9/253 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + G Q ++G V + G S + K Sbjct: 790 VRNDKGDMVPFSAFAEGKWGFGSPKLQRYNGVPAVEVLGEPAAGRSSGEAMKAIEEIMKQ 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ + + + W + + L Sbjct: 850 MPAGVGYAWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + Y D Sbjct: 907 GVIGALLATMARGLSNDVFFQVGLLTTIGLSAKNAILIVEFAK---SQYEHGKGLVDAAI 963 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L V TS+A + V P+A+ G + + G++ A +IF Sbjct: 964 EACRMRLRPIVMTSLAFMLGVFPLAISTGAGAGSQHAIGTGVIGGMITATVLAIFWVPLF 1023 Query: 820 LLFIYDWRAKNAR 832 + + A+ + Sbjct: 1024 FVAVNSLFARKRK 1036 >gi|325523863|gb|EGD02088.1| preprotein translocase subunit SecD [Burkholderia sp. TJI49] Length = 673 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 158/516 (30%), Positives = 267/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ + I + ++ + ++F+D++ E+ + + + Sbjct: 160 ASDARTLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKALAASITELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ GS RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQVPVLLKKDVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FM+ Y +G+++ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMVAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606 Score = 134 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 VAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + I+ Y R K + Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608 >gi|330504697|ref|YP_004381566.1| preprotein translocase subunit SecD [Pseudomonas mendocina NK-01] gi|328918983|gb|AEB59814.1| preprotein translocase subunit SecD [Pseudomonas mendocina NK-01] Length = 622 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 160/526 (30%), Positives = 270/526 (51%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD D ++ ++Y E++S L+KE + Sbjct: 107 NLAQTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSLLRKERV 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 SM + +I L FADS + + D + + ++ + + Sbjct: 167 RYRSMPESNGRIQLGFADSDSLDKAQRLIRKDYS--------DFELTTVERNGQQILQLG 218 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q I ++ ++I Q++ +R R++++G++E +QR G+ RI+++LPG QD + +++L Sbjct: 219 LTQAKIAEIREYSIRQNLTTVRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAEAKRIL 278 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F + R+ +E ++ I+G + A A+FD Sbjct: 279 GKTANLEFRLQADFD-APRGATEAFGFREEGRPPVQLERELIITGDQVTDAQASFDENG- 336 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+I D G TR+N+G+ +AV+ + + Sbjct: 337 RPQVNIRLDGHGGDLMNRATRNNVGRSMAVIFIEQKPVTRYVRQNVDGVEQEVAVSSFVE 396 Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ + +I+G + LA +LRAG L + EER +G LG++ Sbjct: 397 EKKIISLATIQSALGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAE 456 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG + +V + +F+I +Y +G++A ++ N++L + L+S +GATLTLP IAG Sbjct: 457 NIAKGIASTEWAMVFVAIFIIAIYRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAG 516 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE V ++ GF RAYS I DSN+T L+ +LF Sbjct: 517 IVLTLGMAVDANVLIFSRIREELANGLPVQRAIHEGFDRAYSAILDSNLTTLLVGGILFA 576 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I+ SMFTAI R ++ I + +K + I Sbjct: 577 MGTGPVKGFAVTMSLGIVTSMFTAIMFTRGLVNLIFGGRNVKKLWI 622 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 91/250 (36%), Gaps = 6/250 (2%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ V + + + Q++ Q E+ Sbjct: 374 VTRYVRQNVDGVEQEVAVSSFVEEKKIISLATIQSALGSQFRITGLNGQGESSELALLLR 433 Query: 643 TEIVPLSTIQNTE-IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + E +GP + E I KGI + + + I+I +++ F + A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGAENIAKGIASTEWAMVFVAIFIIAIYRF-FGVLATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ +G + G L +A ++ +G +V+ V+++ R+R+ + + + I Sbjct: 493 FNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELA---NGLPVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820 + + + +++ + + G + FA+ M+ GIV + ++I ++ Sbjct: 550 HEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIVTSMFTAIMFTRGLVN 609 Query: 821 LFIYDWRAKN 830 L K Sbjct: 610 LIFGGRNVKK 619 Score = 47.4 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 41/389 (10%), Positives = 95/389 (24%), Gaps = 34/389 (8%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + IGL+ ++PN P + A I + D Sbjct: 4 KYPLWKYLLILSVLAIGLVYSIPNLYPDDPAVQISGASSALSIQ-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 D + S+ + + + D V L Sbjct: 51 VDRASKALTDA----------GIAVKAASIDERGRGGLIRLIKQDDQLPAKDIVRRALGD 100 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174 LN+ + + + + + + A++ ++ I + Sbjct: 101 DYVVALNLAQTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSL 160 Query: 175 GISESTIQRLG---SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231 E R + RI + + ++L+ + N ++ G+ Sbjct: 161 LRKERVRYRSMPESNGRIQLGFADSDSLDKAQRLIRKDYSDFELTTVERNGQQILQLGLT 220 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + ++ +Y + + +N + I + G + E R Sbjct: 221 QAKIAEIREYSIRQNLTTVRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAEAKRILGK 280 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 AP + + +E I+ + + Sbjct: 281 TANLEFRLQADFDAPRGATEAFGFREEGRPPVQLERELIITGDQVTDAQASFDENGRPQV 340 Query: 352 VGADLGSDSIYKGTCA-IVAGLVLIVLFM 379 G G + V+F+ Sbjct: 341 NIRLDGHGGDLMNRATRNNVGRSMAVIFI 369 >gi|88703680|ref|ZP_01101396.1| Protein-export membrane protein secD [Congregibacter litoralis KT71] gi|88702394|gb|EAQ99497.1| Protein-export membrane protein secD [Congregibacter litoralis KT71] Length = 631 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 163/530 (30%), Positives = 270/530 (50%), Gaps = 37/530 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ + P + + LGLDL GG H LEVD + ++ Y + + L++E I Sbjct: 107 NLAETTPDWLTGVGGQPMKLGLDLSGGVHFKLEVDTAAAIERRMEYYLNATKRSLREERI 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 F + F +E + + + + L+ Sbjct: 167 RGFVGLDGDRAVLGRFRSEDLREQARSLIADAFPELLLDRVDEEDEFLIF--------AR 218 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ +D++I +++ Q++ +R R++++G+SE +QR G +RI+++LPG QD + +++L Sbjct: 219 MTDVTVDEIIDYSVSQNLTTLRNRVNELGVSEPLVQRQGRNRIVVELPGIQDTAEAKRIL 278 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF-LRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 G A + F V ++ + D G +E V I+G ++ A A+FD Sbjct: 279 GKVANLEFRLVANADAPAAERQRFEYRSEDRQGATEYLERDVIITGERVSNAQASFDQNG 338 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301 +P V IS D G TR+NI + + V D + Sbjct: 339 -RPNVQISLDSEGGTLMSRATRNNIKRRMGVLFIERKYRTRYEMDENGEEVAVKVPYDEK 397 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + Q+ + QI+G + LA MLRAG+L + VEER VG LG+++I Sbjct: 398 KLLTAPVIQSALGAQFQITGLDNPLESSELALMLRAGALAAPITFVEERTVGPSLGAENI 457 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 G ++ GL L+VLFM++ Y +GL A ++ N++L +A++SLLGATLTLP IAGIV Sbjct: 458 RLGVKSVQYGLALVVLFMVLYYRVFGLCAVTALTANLVLLVAIMSLLGATLTLPGIAGIV 517 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ RIREE S ++ GF RA +TI D+NIT LI V+L+ G Sbjct: 518 LTVGMAVDANVLIFSRIREELGNGLSPQMAIHSGFERAVATILDANITTLIVAVILYAVG 577 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 G V+GFA+T+ + I+ SMFTAI RA++ I ++++++ I + + Sbjct: 578 TGPVKGFAVTLSVGIITSMFTAIMGTRALVNLIYGGRRVETLAIGRIPKM 627 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 96/261 (36%), Gaps = 5/261 (1%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 N G + + ++ + D + Q+Q Sbjct: 359 RNNIKRRMGVLFIERKYRTRYEMDENGEEVAVKVPYDEKKLLTAPVIQSALGAQFQITGL 418 Query: 629 VAQTRVLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 E + + + T VGP + E IR G+ V +++++ + Sbjct: 419 DNPLESSELALMLRAGALAAPITFVEERTVGPSLGAENIRLGVKSVQYGLALVVLFMVLY 478 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F L A+T L ++ + +L G L +A ++ +G +V+ V+++ R+R+ Sbjct: 479 YRV-FGLCAVTALTANLVLLVAIMSLLGATLTLPGIAGIVLTVGMAVDANVLIFSRIREE 537 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + +S + I + + ++ I + + G + FA+ ++ GI+ Sbjct: 538 L---GNGLSPQMAIHSGFERAVATILDANITTLIVAVILYAVGTGPVKGFAVTLSVGIIT 594 Query: 808 AASSSIFIAAPILLFIYDWRA 828 + ++I ++ IY R Sbjct: 595 SMFTAIMGTRALVNLIYGGRR 615 Score = 38.9 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 13/43 (30%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44 R W ++ ++ G L A PN + I Sbjct: 4 RYPIWKYLIVLIVVIGGALYASPNLYAPDPALQIAGESSGTMI 46 >gi|261868465|ref|YP_003256387.1| preprotein translocase subunit SecD [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413797|gb|ACX83168.1| protein-export membrane protein SecD [Aggregatibacter actinomycetemcomitans D11S-1] Length = 616 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 164/524 (31%), Positives = 286/524 (54%), Gaps = 39/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + N + GLDLRGG ++EVD + ++ + D LR+ L+KE Sbjct: 104 NLAPATPKWLSSIGGNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRKEKY 163 Query: 87 GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +++ I N T ++ +S L V L + T+E +S+ Sbjct: 164 QYSAIKSIDNFSTGVTLTNSEQ-----------LSDVQRYLRKQHPNLDVSVTSENTLSL 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS + +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+++LPG QD +R +++ Sbjct: 213 GLSDSVLNEARESAIEQNLSILRKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + + + G+ D + ++ + + G H+ A++ Sbjct: 273 LGATATLEFRIVNASANLEAAARGMVPSDSEVKYDRNNRPVVLYKRAVLGGEHITNASSG 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D T P V ++ D G + TR N+ KP+A + + Sbjct: 333 VDQNTSLPQVSVTLDSEGGEIMSQTTRLNLKKPMATLYVEYKDSGKKDENGKTILQKHEE 392 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q + QI+G + A LA +LR+G+L + IVEER +G LG+ ++ Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVE 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A GL+++V FM++ Y K+G++A+ ++ N++L + L+SLL ATLT+P IAGIV Sbjct: 453 QGLQASFWGLMIVVAFMVIYYRKFGIIANIALIANIVLLVGLISLLPGATLTMPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G++VD+N+L+ ERI+EE R + + +++ G+S A+S+IFD+N+T ++ V L+ G Sbjct: 513 LAVGMSVDANVLIFERIKEEIRNGRPIQQAINEGYSGAFSSIFDANLTTILTAVALYAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G ++GFAIT+ L I ISMFTAI+ RA++ F+ K++ + I Sbjct: 573 TGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKRIDKLSI 616 Score = 147 bits (369), Expect = 9e-33, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 81/174 (46%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +G+ + ++ ++ I ++ F + A LI +I +G +L Sbjct: 441 TIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYR-KFGIIANIALIANIVLLVGLISLLP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ +G SV+ V++++R+++ ++ + I++ + Sbjct: 500 GATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIR---NGRPIQQAINEGYSGAFSSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ ++ + + G I FAI ++ GI ++ ++I I+ F+Y + Sbjct: 557 ANLTTILTAVALYAVGTGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKR 610 Score = 43.9 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG+L ALPN + + RG Sbjct: 4 RYPLWKNLMVIFVVAIGILYALPNLYGEDPAVQISGT------------RG--------- 42 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 +++S LK + S+ I + F ++ + DK+T L Sbjct: 43 -----QEANSAVLSDVQSVLKDNNLTTKSIVLESGSILVRFNNTDTQLLAKDKITEKL 95 >gi|254513991|ref|ZP_05126052.1| protein-export membrane protein SecD [gamma proteobacterium NOR5-3] gi|219676234|gb|EED32599.1| protein-export membrane protein SecD [gamma proteobacterium NOR5-3] Length = 631 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 161/525 (30%), Positives = 268/525 (51%), Gaps = 37/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ + P + + LGLDL GG H LEVD V ++ Y + + L++E + Sbjct: 107 NLAETTPPWLTGLGGQPMKLGLDLSGGVHFKLEVDTVAAVERRMEYYLNATKRALREERV 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 F + FA +E + + + + ++ Sbjct: 167 RGFVGLDGDRAVVGRFATEDLREQARSLIGDAFPELLLDRVDEEDEFMIY--------AR 218 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ +D++I +++ Q++ +R R++++G+SE +QR G +RI+++LPG QD + +++L Sbjct: 219 MTDQTVDEIIDYSVSQNLTTLRNRVNELGVSEPLVQRQGRNRIVVELPGIQDTAEAKRIL 278 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-DSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 G A + F V ++ + D G +E + I+G ++ A A+FD Sbjct: 279 GKVANLEFRLVANADAPAAERQRFEYRSADRQGMTEYLERDIIITGERVSNAQASFDQNG 338 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301 P V IS D G TR+N+ + + V D + Sbjct: 339 M-PNVQISLDSEGGSLMSRATRNNVKRRMGVLFIERKYRTRYEKDESGQEVAIKVPYDEK 397 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + Q+ + QI+G + LA MLRAG+L + VEER VG LG+++I Sbjct: 398 TLLTAPVIQSALGAQFQITGLDNPLESSELALMLRAGALAAPITFVEERTVGPSLGAENI 457 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 G ++ GL L+VLFM++ Y +GL A ++ N++L +A++SLLGATLTLP IAGIV Sbjct: 458 RLGVKSVQYGLALVVLFMVIYYRVFGLCAVTALTANLVLLVAIMSLLGATLTLPGIAGIV 517 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ RIREE S ++ GF RA +TI D+NIT LI V+L+ G Sbjct: 518 LTVGMAVDANVLIFSRIREELGNGLSPQMAIHSGFERAVATILDANITTLIVAVILYAVG 577 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 G V+GFA+T+ + I+ SMFTAI R+++ I +++K++ I Sbjct: 578 TGPVKGFAVTLSVGIITSMFTAIMGTRSLVNLIYGGRRVKTLSIG 622 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 95/261 (36%), Gaps = 5/261 (1%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 N G + + + + D + Q+Q Sbjct: 359 RNNVKRRMGVLFIERKYRTRYEKDESGQEVAIKVPYDEKTLLTAPVIQSALGAQFQITGL 418 Query: 629 VAQTRVLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 E + + + T VGP + E IR G+ V +++++ I Sbjct: 419 DNPLESSELALMLRAGALAAPITFVEERTVGPSLGAENIRLGVKSVQYGLALVVLFMVIY 478 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F L A+T L ++ + +L G L +A ++ +G +V+ V+++ R+R+ Sbjct: 479 YRV-FGLCAVTALTANLVLLVAIMSLLGATLTLPGIAGIVLTVGMAVDANVLIFSRIREE 537 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + +S + I + + ++ I + + G + FA+ ++ GI+ Sbjct: 538 L---GNGLSPQMAIHSGFERAVATILDANITTLIVAVILYAVGTGPVKGFAVTLSVGIIT 594 Query: 808 AASSSIFIAAPILLFIYDWRA 828 + ++I ++ IY R Sbjct: 595 SMFTAIMGTRSLVNLIYGGRR 615 Score = 39.3 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 13/43 (30%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44 R W ++ ++ G L A PN + I Sbjct: 4 RYPIWKYLIVLIVVLGGALYAAPNLYAPDPALQVAGESSGTLI 46 >gi|167629911|ref|YP_001680410.1| protein-export membrane protein secf [Heliobacterium modesticaldum Ice1] gi|167592651|gb|ABZ84399.1| protein-export membrane protein secf [Heliobacterium modesticaldum Ice1] Length = 292 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 148/288 (51%), Gaps = 7/288 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 ++ + R +S+L I + L GLN GIDF GG L + R V + VR L+ Sbjct: 1 MEIIGRRKIWYALSLLILIPGLISLLLQGLNLGIDFTGGSMLQLKFERAVTVENVRDVLD 60 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 +G + Q +G + + + + T++ E VGP Sbjct: 61 KANVGSSTIQLAEGN-------SVIVRTHTLEQSQRNELVGAMKTQLGDLTVERDENVGP 113 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 + +EL R ++ ++++ I M+ YI RF++ FA+ AI L+ DI G F++F IE + Sbjct: 114 VVGKELTRNALLALLLAIIGMVAYISFRFEFKFAVAAIIALLHDILVVTGLFSIFQIEVD 173 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 + VAA+LT+ GYS+ND +V++DR+R+N++ + L+++S+ ETL RS+ T + Sbjct: 174 SSFVAAILTVFGYSINDTIVIFDRIRENLRKKKKDENLDALVNRSVKETLTRSINTVLTV 233 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 ++ + WGG+ F + M G++ A SSIF A+P+ + W Sbjct: 234 IFVLVALLFWGGNTTKVFTLAMLLGVIAGAYSSIFNASPVWYDLKQWE 281 >gi|302187781|ref|ZP_07264454.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv. syringae 642] Length = 1044 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ + F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTARTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + V+ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPAL 492 Score = 68.6 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + A V S S S +S N + L Sbjct: 778 RMTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSSGD 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + + + Sbjct: 1009 ITAVILAIFWVPLFFVTVSGLFKSKQK 1035 >gi|309378987|emb|CBX22440.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 311 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS+L I ++ L T GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMGYGKLTTFISLLTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYRQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L++GDI Q K+ ++RL + G + AQ + V + + P Sbjct: 61 VNKMRDRLDTLKMGDIQVQALGTNKHIMIRLPNKEGVTSAQ--LSNRVMDLLKKDNPDVA 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + + +++Y+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGVVVAGIIVYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSREN 298 Query: 830 NAR 832 R Sbjct: 299 IGR 301 >gi|308185879|ref|YP_003930010.1| Protein-export membrane protein secD [Pantoea vagans C9-1] gi|308056389|gb|ADO08561.1| Protein-export membrane protein secD [Pantoea vagans C9-1] Length = 615 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 165/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + + LGLDLRGG H ++EVD D ++ + Sbjct: 100 VVALNLAPATPRWLT---------MLSAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQN 150 Query: 74 SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 +D LRS L+ + I ++ +I N + + F D+ ++ ++ Q Sbjct: 151 ADTLRSDLRTKNIPYTNVNKIANYGVEIRFRDAASRDAAISWLSSRHQ-----------D 199 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ ++ + +S + + +A++Q++ I+R R++Q+G++E +QR GS RI+++ Sbjct: 200 LVINSSGSDALRATMSDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V + G DG ++ +V Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTSVDPTAAASGRVPGDSEVKDMRDGQPVVLYKRV 319 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 ++G H+ +T++ + ++P V+IS D G T+DNIGKP+A + + Sbjct: 320 ILTGDHITDSTSS-MDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGKK 378 Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 Q+ +I+G A L+ +LRAG+L + IVEE Sbjct: 379 DANGRSILVKQEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEE 438 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R +G +G +I +G A + GL+ +LFM+V Y K+GL+A ++ +N++L + ++SLL Sbjct: 439 RTIGPTMGQQNITQGLEACLWGLLASILFMVVFYKKFGLIATSALLVNLVLIVGIMSLLP 498 Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+ Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANV 558 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LI ++L+ G G+++GFAIT + I SMFTAI RA++ + K++ + I Sbjct: 559 TTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIIGTRAIVNLVYGGKRINKLSI 615 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 82/177 (46%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + ++ I +G+ + +A ++++ + +K F L A + L++++ +G +L Sbjct: 440 TIGPTMGQQNITQGLEACLWGLLASILFMVVFYK-KFGLIATSALLVNLVLIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ ++ S + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI A GI + ++I I+ +Y + N Sbjct: 556 ANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIIGTRAIVNLVYGGKRINK 612 >gi|260913705|ref|ZP_05920181.1| protein-export membrane protein SecD [Pasteurella dagmatis ATCC 43325] gi|260632244|gb|EEX50419.1| protein-export membrane protein SecD [Pasteurella dagmatis ATCC 43325] Length = 616 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 158/524 (30%), Positives = 279/524 (53%), Gaps = 39/524 (7%) Query: 30 SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + GLDLRGG ++E+D + +N + D LR+ L+KE Sbjct: 104 NLAPATPKWLTSIGAYPMKWGLDLRGGVRFLMEIDMNSALNKRQEQLQDTLRTQLRKEKY 163 Query: 87 GVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S++ ++ ++ + +N + T + + + Sbjct: 164 QYTSIKAAEGFSTQITLLKPEQLDDAQRFLRKQHHDLN-----------ITTLSNNTLLL 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS N +++ AIEQ++ I+R+R+ ++G+SE+ IQR G+ RI+++LPG QD +R +++ Sbjct: 213 TLSDNALNEARESAIEQNLTILRKRVSELGVSEAVIQRQGAERIVVELPGVQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + G D G ++ + + G H+ A++ Sbjct: 273 LGATATLEFRLVNENVNLDSASRGFIPADSEVKLDRSGRPIVLYKRAVLGGEHITNASSG 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D +T +P V ++ D G + TR N+ KP+A + + Sbjct: 333 LDQQTSRPQVSVTLDSEGGEIMSQTTRLNLKKPMATLYVEYKDSGKKDENGKSILEKHEE 392 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q + QI+G + A LA +LR+G+L + IVEER +G LG++++ Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVR 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A GLV +V+F+ Y K+G++A+ ++ N+IL + L+SLL ATL++P IAGIV Sbjct: 453 QGLEASFWGLVAVVIFVAFYYRKFGMIANVALIANIILVVGLMSLLPGATLSMPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+++D+N+L+ ERI+EE R + V +++ G+S A+++IFD+N+T ++ ++L+ G Sbjct: 513 LSVGMSIDANVLIFERIKEEIRNGRPVQQAINEGYSGAFTSIFDANLTTILTAIILYAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L + ISMFTAI RA++ F+ K++ + I Sbjct: 573 AGPVKGFAITLALGVAISMFTAIVGTRAIVNFLYGGKRINKLSI 616 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 85/177 (48%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + E +R+G+ +A++I++ ++ F + A LI +I +G +L Sbjct: 441 TIGPSLGAENVRQGLEASFWGLVAVVIFVAFYYR-KFGMIANVALIANIILVVGLMSLLP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G S++ V++++R+++ ++ + I++ + Sbjct: 500 GATLSMPGIAGIVLSVGMSIDANVLIFERIKEEIR---NGRPVQQAINEGYSGAFTSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G + FAI +A G+ ++ ++I I+ F+Y + N Sbjct: 557 ANLTTILTAIILYAVGAGPVKGFAITLALGVAISMFTAIVGTRAIVNFLYGGKRINK 613 Score = 38.9 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 15/34 (44%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF 35 R W IL + +G+L +LPN + + Sbjct: 4 RYPLWKNILVILTIIVGVLYSLPNLYGEDPAVQI 37 >gi|237798655|ref|ZP_04587116.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021508|gb|EGI01565.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 1044 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 68/687 (9%), Positives = 184/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKSAITAQNVQVSSGQLGGLPAISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ K+ F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ +L + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYVLICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERTS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + ++ Sbjct: 640 ENSVFELAKRAQGYFFSLRDAMVFAIV 666 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 67.0 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + V S S S +S N + L Sbjct: 778 RMKPEDLKKWYVRNSSGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEILGTPAPGYSSGD 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLTDSAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + I + Sbjct: 1009 ITAVILAIFWVPLFFVSISGLFKSKQK 1035 >gi|304395471|ref|ZP_07377354.1| protein-export membrane protein SecD [Pantoea sp. aB] gi|304356765|gb|EFM21129.1| protein-export membrane protein SecD [Pantoea sp. aB] Length = 604 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 163/518 (31%), Positives = 283/518 (54%), Gaps = 37/518 (7%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 R+ S + + LGLDLRGG H ++EVD D ++ + +D LRS L+ + I ++ Sbjct: 99 PRWLSMLSAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNADTLRSDLRTKNIPYTTVN 158 Query: 93 QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 +I N + + F D+ ++ ++ Q ++ ++ + +S Sbjct: 159 KIANYGVEIRFRDAASRDAAISWLSSRHQ-----------DLVINSSGSDALRATMSDAR 207 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++LG TA Sbjct: 208 LSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATAT 267 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V + G DG ++ +V ++G H+ +T++ + + Sbjct: 268 LEFRLVNTSVDPTAAASGRVPGDSEVKDMRDGQPVVLYKRVILTGDHITDSTSS-MDEYN 326 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 +P V+IS D G T+DNIGKP+A + + Sbjct: 327 QPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVAN 386 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q+ +I+G A L+ +LRAG+L + IVEER +G +G +I +G A Sbjct: 387 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNITQGLEAC 446 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GL+ +LFM+V Y K+GL+A ++ +N++L + ++SLL ATLT+P IAGIVL + +A Sbjct: 447 LWGLLASILFMVVFYKKFGLIATSALLVNLVLIVGVMSLLPGATLTMPGIAGIVLTLAVA 506 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI ++L+ G G+++G Sbjct: 507 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 566 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 FAIT + I SMFTAI RA++ + K++ + I Sbjct: 567 FAITTAIGIATSMFTAIIGTRAIVNLVYGGKRINKLSI 604 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 82/177 (46%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + ++ I +G+ + +A ++++ + +K F L A + L++++ +G +L Sbjct: 429 TIGPTMGQQNITQGLEACLWGLLASILFMVVFYK-KFGLIATSALLVNLVLIVGVMSLLP 487 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ ++ S + I + V Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 544 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + G I FAI A GI + ++I I+ +Y + N Sbjct: 545 ANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIIGTRAIVNLVYGGKRINK 601 >gi|193222221|emb|CAL60533.2| Protein-export membrane protein SecF [Herminiimonas arsenicoxydans] Length = 315 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 91/304 (29%), Positives = 159/304 (52%), Gaps = 3/304 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 I FMR IS+L + ++ L GL+ I+F GG + + +P Sbjct: 1 MMEFFRIKKDIPFMRHALIFNVISVLTFVAAVFFLVHKGLHLSIEFTGGTVMEITYPKPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 ++ VR+ L L D+ Q+F ++ L+RL Q + AQ V E V + Sbjct: 61 NIEGVRTKLGELGYTDMQVQSFGTAQDVLIRLPVQQNVNTAQ--VSERVMTALKAQDETV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 +++ E VGP++ EL G++ + + I ++IY+ IRF+W +A+ AI + D+ LG Sbjct: 119 SLKRVEFVGPQVGEELTHDGLMAMGMLVIGVMIYLAIRFEWKYAVAAIFANLHDVVIILG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINET 768 FFA F EF+LT +A +L ++GYSVN+ V+V+DR+R+ + ++ D+++ +I T Sbjct: 179 FFAFFQWEFSLTVLAGILAVLGYSVNESVIVFDRVRETFRDRKHGKMAVADVMNHAITGT 238 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + R++ T + + VL M GG + FA+ + GI SS+F+AA + +++ R Sbjct: 239 ISRTLITHGSTQLMVLSMFFLGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKRE 298 Query: 829 KNAR 832 + Sbjct: 299 DLIK 302 >gi|291277219|ref|YP_003516991.1| protein-export membrane protein [Helicobacter mustelae 12198] gi|290964413|emb|CBG40263.1| protein-export membrane protein [Helicobacter mustelae 12198] Length = 323 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 89/294 (30%), Positives = 158/294 (53%), Gaps = 3/294 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 F+ +G+ S L + ++ L+F G GIDF GG + ++P Sbjct: 1 MEFFKKVRIFDFVAYSTYGLIFSTLVILGALALIFFKGFVPGIDFAGGSTAQIRYDKPAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 +S +R L+ + S + G K P + L + ++ + Sbjct: 61 ISQIRERLDRAEGFRGSQVSEYGSK--FEVQIKIPYTETLLGKNLNTMLVEVLKDTGNFE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ + VGPK+ EL +KGI+ +I++AIAM++Y+ R++W FAL +I L+ D+ T Sbjct: 119 LRKLDTVGPKVGNELKQKGILSLILAAIAMMLYVSFRYEWRFALASILALLHDVIITAAS 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 +F I+ NL VAA+LTL+GYS+ND ++V+DR+R+ M L S +++I+++I+ TL Sbjct: 179 VIVFHIDLNLEVVAALLTLLGYSINDTIIVFDRIRERM-LVDKSNDIQEVINEAISHTLS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R++ TS+ F +L + ++GG I F++PM G+V SS+F+A + + + Sbjct: 238 RTLLTSLTVFFVLLTLYLFGGENIIGFSLPMLVGVVFGTYSSMFLAPKLTILLG 291 >gi|297584749|ref|YP_003700529.1| protein-export membrane protein SecF [Bacillus selenitireducens MLS10] gi|297143206|gb|ADH99963.1| protein-export membrane protein SecF [Bacillus selenitireducens MLS10] Length = 320 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 9/304 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + F++ R S + I LL T GLN GIDF G + +LA+ PV Sbjct: 1 MNFEHWNTRLDFVKHRKKFFIASASTLLAGIILLMTVGLNLGIDFTSGTTIDILADEPVT 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 V + E++ + Sbjct: 61 EQEVMAEFENIGYIPDDLTLAGDTNEIGRAQFIGDLSQEETLSIQAHFM------DVYGN 114 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 V P + EL R ++ V+I+++ ++IY+ RF+ + + AI L D L Sbjct: 115 EPTVSTVTPIVGEELARNAVISVLIASVGIIIYVTFRFELLYGISAIVALFHDALLILVI 174 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINE 767 F++ +E N+ +AAVLT++GYS+ND +V +DR+R+NM F D +++KS+ + Sbjct: 175 FSILQMEVNIPFIAAVLTIVGYSINDTIVTFDRIRENMSYEKKLKGFEDVARVVNKSLVQ 234 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL RS+ T + + + ++GG + +F++ + G++ SS+FIAA + L + + Sbjct: 235 TLARSINTVLTVLFAAGALFIFGGEGLRTFSLALVVGLLAGTYSSLFIAAQVFLELKTRQ 294 Query: 828 AKNA 831 K Sbjct: 295 IKKR 298 >gi|256391552|ref|YP_003113116.1| protein-export membrane protein SecF [Catenulispora acidiphila DSM 44928] gi|256357778|gb|ACU71275.1| protein-export membrane protein SecF [Catenulispora acidiphila DSM 44928] Length = 389 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 78/319 (24%), Positives = 143/319 (44%), Gaps = 12/319 (3%) Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + L ++ F+ + IS + S L GLN+ +DF+GG Q + Sbjct: 2 SASNSWGNRLYRGEVSYDFIGKQKRWYTISGALLLISALSLLVFGLNFTLDFRGGSQFDI 61 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ + S + D + Q + + V ++ P + +V + + Sbjct: 62 VSP--TASTQTIQKSVSSIVKDPTVQTSNDSQGRHVVVKTTPLSTDQLQKVRQAIATDAG 119 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +V E+ +K I G+++ +++Y+ + ++W AL I L+ D Sbjct: 120 KT-KDPNAVTVTLVSGSWGHEITQKAITGLVVFVALVMLYLAVFYEWKMALSGIIALVHD 178 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI---SFRDL 760 + T G +AL G E + V LT++GYS+ D VVV+D++R+N K T+ S+ Sbjct: 179 LVITAGIYALIGFEVSPATVIGFLTILGYSLYDTVVVFDKVRENTKGLGTTKTDLSYTQS 238 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGG------SVIGSFAIPMAFGIVVAASSSIF 814 + ++N+TL RS+ TS+ A I V + G V+ A+ + GI V SSIF Sbjct: 239 ANLAVNQTLIRSLNTSLIALIPVAALLFAGTVVSGGAGVLQDLALALLVGIAVGTYSSIF 298 Query: 815 IAAPILLFIYDWRAKNARI 833 IA P+L + + + + Sbjct: 299 IATPLLADLKEREPEMRAL 317 >gi|302135102|ref|ZP_07261092.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 622 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 166/539 (30%), Positives = 275/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE S+ Q+ N I L F D +E V + Sbjct: 154 EGEVKSLLRKEKARYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVN 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + +F++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 155 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 R + V + + + ++ L G + + + Sbjct: 374 TTTYTRQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + I+I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 42.4 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 29/118 (24%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVGGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALTDA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|194332866|ref|YP_002014726.1| preprotein translocase subunit SecF [Prosthecochloris aestuarii DSM 271] gi|194310684|gb|ACF45079.1| protein-export membrane protein SecF [Prosthecochloris aestuarii DSM 271] Length = 309 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 153/309 (49%), Gaps = 11/309 (3%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 + I F+R R GIS++ + + L GLN+GIDFKGG + + ++ + + Sbjct: 1 MHLFKNTNIDFLRHRKIAYGISLVLILAGMVSLAIRGLNFGIDFKGGTEAVLRFDQDISI 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 VRS L + + + V +Q V Q + + + Sbjct: 61 GDVRSVLREAGVRGMVKSY---GTDRSVLIQTDFEGDVNQLKTIVSTALNDRFSDNPHEM 117 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + VGP I+ +L + ++ + +A+LIY+ IRF++ FA ++ + D+ LG F Sbjct: 118 LRIDAVGPSIASDLKWAALKALLGALVAILIYVGIRFEFRFAAASVVAIFHDVFIVLGLF 177 Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 +L G ++ + + +AA LT+ GYS+ND VVVYDR+R+N+ L + + + S Sbjct: 178 SLLGGVFDFMPLDVDQSIIAAFLTIAGYSINDTVVVYDRIRENV-LGRKPSEYSSIFNAS 236 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +N+TL R++ TS ++V + ++ G I F+ + GI V SSIFIAAPI+L Sbjct: 237 LNQTLSRTIITSGTTLLTVAVLFIFAGPAIRGFSFAILIGIAVGTYSSIFIAAPIVLDWQ 296 Query: 825 DWRAKNARI 833 + ++ Sbjct: 297 LKSKRPIKL 305 >gi|119713613|gb|ABL97664.1| protein-export membrane protein SecD [uncultured marine bacterium EB0_39H12] Length = 615 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 156/521 (29%), Positives = 262/521 (50%), Gaps = 38/521 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + N + LGLDLRGG H +++VD + + +LR ++E I Sbjct: 103 NLAPTTPKWLMDIGANPMKLGLDLRGGVHFLMQVDTETAIKNRQDGTLQDLRRRFREEKI 162 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 + I L F + + + ++ N L D + + Sbjct: 163 RYSQAGVESDASIYLKFNNPDVLQKAEEFISDNYSQFNFPLISDA----------MSLRL 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 VLS I+Q+ S AI+Q++ +R R++++G+SE +QR G RI++QLPG QD + + + Sbjct: 213 VLSDLEIEQIESDAIDQNLTTLRNRVNELGVSEPIVQRQGKKRIVVQLPGIQDTAEAKNI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 LG TA + FH + R+ G ++D + + G + A A+FD Sbjct: 273 LGKTATLEFHLEAQMD-TPRSRKTSYPYRNGMGAPAFLQDAIILGGDQVATAQASFDENG 331 Query: 266 HKPVVDISFDEMGARR-----------------------FFEVTRDNIGKPLAVVLDGRV 302 V E G++ +E + P+ + + Sbjct: 332 LPQVNITLDGEGGSKMHRATRGNIGKRLGVLFVEQKTRTVYERDVEGKQIPVQESYEVKE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + +A +I+G + + LA +LRAG+L + VEER VG LG+D+I Sbjct: 392 IISLATIRAALGTTFRITGLDSPSESSELALLLRAGALAAPMTFVEERTVGPSLGADNIQ 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 G +++ GL+L+++F++ Y +G+ A ++ N++L +A++S+L ATLTLP IAGIVL Sbjct: 452 AGIFSMILGLLLVLVFILFYYRVFGIAASLALTFNIVLLVAVMSILSATLTLPGIAGIVL 511 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ RIREE K + ++D G++RA+ TI+D+N+T LI V+L +G Sbjct: 512 TVGMAVDANVLIFSRIREELNKGREPLEAIDAGYNRAFLTIWDANVTTLIVAVILLSYGT 571 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 G V+GFAIT+ + I+ SMFTAI RA + I +K Sbjct: 572 GPVKGFAITLSIGIITSMFTAIMGTRAFVNLIYGSRKNLER 612 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 82/206 (39%), Gaps = 4/206 (1%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + T VGP + + I+ GI +I+ + +L++I Sbjct: 412 DSPSESSELALLLRAGALAAPMTFVEERTVGPSLGADNIQAGIFSMILGLLLVLVFILFY 471 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F + A L +I + ++ L +A ++ +G +V+ V+++ R+R+ Sbjct: 472 YRV-FGIAASLALTFNIVLLVAVMSILSATLTLPGIAGIVLTVGMAVDANVLIFSRIREE 530 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + + ID N ++ I + + +G + FAI ++ GI+ Sbjct: 531 L---NKGREPLEAIDAGYNRAFLTIWDANVTTLIVAVILLSYGTGPVKGFAITLSIGIIT 587 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + ++I + IY R RI Sbjct: 588 SMFTAIMGTRAFVNLIYGSRKNLERI 613 >gi|256822294|ref|YP_003146257.1| protein-export membrane protein SecD [Kangiella koreensis DSM 16069] gi|256795833|gb|ACV26489.1| protein-export membrane protein SecD [Kangiella koreensis DSM 16069] Length = 639 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 170/526 (32%), Positives = 275/526 (52%), Gaps = 38/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG- 85 ++ P + + LGLDLRGG H +++VD + + + + L E Sbjct: 121 NLAPATPDWLSSLGGKPMKLGLDLRGGIHFLMQVDMEQAMARQQEQLRRDFIESLTAEKP 180 Query: 86 IGVFSMRQIQNKITLSFADSRFKENIADKV-TLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144 + I N + +SF + E + ++ ++ L + ++ Sbjct: 181 SIRGRVETIDNGLVISFRNQDDAERAFSVLYQNYIDRIDINLAEQNNRPVV--------R 232 Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204 +Q + + +AI+Q+ I+ R++ +G++E IQR GS RI++QLPG QD + ++ Sbjct: 233 ATFNQTKLQAIQDNAIDQNRLILSNRVNSLGVAEPLIQRQGSDRIVVQLPGVQDSALAKR 292 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFL----RDSDGNQYLVEDKVEISGIHLNGATAN 260 +LG TA + F V G +S+ +V D+V++SG HL A ++ Sbjct: 293 ILGATATLEFRLVNHEADIVAAQQGRVPAGSKLFESERGPIVVFDEVQVSGDHLTDAFSS 352 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 F P+T++P+V + D G R T N G LA++L V Sbjct: 353 FHPQTNQPIVSVRLDGEGGARMLRTTTANRGNSLAMILKESVPVFEIKDGKRELVKSSVV 412 Query: 303 ---LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 ++AP IN A + +FT LA LR+G+L IVEER +GA LG++ Sbjct: 413 ETLVSAPRINGAFGTDFFIEGPDFTPANTKDLATQLRSGALIAPTFIVEERTIGASLGAE 472 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG +++ G L+VLFM++ Y +G+VA+ ++ NV+ +A++S++GATLTLP IAG Sbjct: 473 NIEKGINSVIIGFSLVVLFMLLYYKAFGVVANIALIFNVVTIVAVMSIMGATLTLPGIAG 532 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+++ ERIREE R V ++D G+S+A STI D+NIT IA ++L+ Sbjct: 533 IVLTVGMAVDANVIIFERIREELRHGTGVAQAIDKGYSQALSTIADANITTAIAAIILYA 592 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G ++GFAIT+ + IL SMFTAI + R ++ I K S Sbjct: 593 VGTGPIKGFAITLFIGILTSMFTAILVSRGIINLIYGRGKKPSKLW 638 Score = 163 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 86/178 (48%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + E I KGI VII +++++ + +K F + A LI ++ + ++ G Sbjct: 464 TIGASLGAENIEKGINSVIIGFSLVVLFMLLYYK-AFGVVANIALIFNVVTIVAVMSIMG 522 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++R+R+ ++ IDK ++ L Sbjct: 523 ATLTLPGIAGIVLTVGMAVDANVIIFERIREELR---HGTGVAQAIDKGYSQALSTIADA 579 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I+ + + G I FAI + GI+ + ++I ++ I+ IY K +++ Sbjct: 580 NITTAIAAIILYAVGTGPIKGFAITLFIGILTSMFTAILVSRGIINLIYGRGKKPSKL 637 Score = 40.1 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 27/120 (22%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 W +L + I LL A PN + + SA+ IS Sbjct: 16 YPKWKYVLILFVVAISLLYAAPNIYGEDPAVQL-SALRDATIS----------------- 57 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL-SFADSRFKENIADKVTLFLQG 121 + +++ + ++EG+ ++ + K+ + F + + + L Sbjct: 58 --------EQQVEQIEAAWQQEGLASKAIERDGEKLVIARFQSNEEQLQAQEIANKILNP 109 >gi|261401411|ref|ZP_05987536.1| protein-export membrane protein SecF [Neisseria lactamica ATCC 23970] gi|269208539|gb|EEZ74994.1| protein-export membrane protein SecF [Neisseria lactamica ATCC 23970] Length = 311 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 165/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS+L I ++ L T GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMGYGKLTTFISLLTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYRQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L++GDI Q K+ ++RL + G + AQ + V + + P Sbjct: 61 VNKMRDRLDTLKMGDIQVQALGTNKHIMIRLPNKEGVTSAQ--LSNRVMDLLKKDNPDVA 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + +++Y+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIVYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSREN 298 Query: 830 NAR 832 R Sbjct: 299 IGR 301 >gi|19110414|gb|AAL82790.1| export membrane protein SecD [Rickettsia typhi] Length = 518 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 198/533 (37%), Positives = 319/533 (59%), Gaps = 28/533 (5%) Query: 1 MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59 M+N W ++ + + ALPNF+ + +P + ++LGLDLRGG++L+L+ Sbjct: 1 MQNLPKWKIVPSIICTVFATICALPNFIQIN-----WKFLPHDSVNLGLDLRGGANLLLD 55 Query: 60 VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 VD D ++N ++ +D LR ++ IG ++ N I L + +++ + Sbjct: 56 VDFDTYLNDSMENIADTLRKNFREHKIGYKNLLVRHNNIQLEVRSTEVLKSLKKIIHK-- 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 +++ + +I + S++ ++ +++ +EQS+EI+R RID G E Sbjct: 114 ----------IDPEIIIEVNKNKIKLRYSESRLNDLLNKVVEQSIEIVRMRIDSTGTKEP 163 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 +QR G+ IL+Q+PG +PS L+ +LG TAK++FH V N + + + G L Sbjct: 164 ILQRQGNKHILLQVPGVDNPSYLKNILGKTAKLTFHLVDENANIEEAIKGHIPLDSMLIK 223 Query: 240 ---------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 +++ KV +SG HL A+A+FD + +P+V SF+ +G++ F E+T++N Sbjct: 224 GDSEHHGEYYIVIKKKVLLSGTHLTKASASFDQNS-QPMVAFSFNNLGSKIFTEITKNNT 282 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 GK LA+VLD ++L+AP+IN AI G I+GNFTIE+A LA +LR GSLP L I+EER Sbjct: 283 GKRLAIVLDNKLLSAPMINGAIIGGDGIITGNFTIESANELALLLRVGSLPTPLKIIEER 342 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 ++G +LG+DSI G A + G + +FMI+ YG GL A+ ++ L ++ LALLSL A Sbjct: 343 SIGPNLGADSIESGKKAGLIGFTAVCIFMILSYGVIGLFANIALILALLYILALLSLFQA 402 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAGI+L +G+AVD+N+L+ ERI+EE K S ++ GF A++TI DSN+T Sbjct: 403 TLTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATIIDSNLTT 462 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 LI L+ FG GA++GFA+ + + I+ SMF+AI I + ++ ++Y K K + Sbjct: 463 LIVAFALYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFKPKKL 515 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 5/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP + + I G +I A+ I++ + + L A LIL + L +LF Sbjct: 343 SIGPNLGADSIESGKKAGLIGFTAVCIFMILSYGVI-GLFANIALILALLYILALLSLFQ 401 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++Y+R+++ + +S I + + Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATIIDS 458 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ I + ++G I FA+ + GI+ + S+I I +L+ I+ K ++ Sbjct: 459 NLTTLIVAFALYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVKYFKPKKL 515 >gi|170726112|ref|YP_001760138.1| preprotein translocase subunit SecF [Shewanella woodyi ATCC 51908] gi|169811459|gb|ACA86043.1| protein-export membrane protein SecF [Shewanella woodyi ATCC 51908] Length = 315 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 171/299 (57%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + ++ I F+R +S+L + S+ L T G+N+G+DF GG + + + P+ Sbjct: 1 MYQILSIKGTINFLRHALPISMLSLLLVLGSLTSLATKGINWGLDFTGGTVVELEFSSPI 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL ++R L S++ QNF ++ L RL + G A + V + T + P Sbjct: 61 DLEILRGKLTSVETDGAVVQNFGSSRDVLTRLPVKEGV--ATDTQVAQVMEAATALDPQV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + E+VGP+I +EL +G + V+++ I +LIY+ RF+W ALG++ L D+ TLG Sbjct: 119 IQKRVEVVGPQIGKELAEQGGLAVLVALICILIYVSFRFEWRLALGSVAALAHDVIITLG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L ++F+LT +A VLT++GYS+ND +VV+DR+R+N S S ++++ SI +T+ Sbjct: 179 VFSLLQLDFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKS-SPEEVVNTSITQTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T+ + V+ + + GG++I FA + GI V SSI++A+ + + + R Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296 >gi|167580649|ref|ZP_02373523.1| preprotein translocase subunit SecD [Burkholderia thailandensis TXDOH] Length = 621 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 164/514 (31%), Positives = 266/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 IVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A+ Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALRQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQVPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|206561644|ref|YP_002232409.1| preprotein translocase subunit SecD [Burkholderia cenocepacia J2315] gi|198037686|emb|CAR53629.1| putative protein-export membrane protein SecD [Burkholderia cenocepacia J2315] Length = 673 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 162/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + RS L+ + I + +++ + ++F+D++ E+ + + + Sbjct: 160 ASDARSLLRDKNIRDGGVSRVEQSVVVNFSDAQTAEDARKVLAASITELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ GS RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G L++ V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGIQAPVLLKKDVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + I+ Y R K + Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608 Score = 41.2 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 29/124 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IGLL LPNF ++ ++V Sbjct: 3 RYPLWKYVVMVVALAIGLLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIADKVTL 117 ++ S L I + I + D+ + + D + Sbjct: 38 SGKATVKLDSTTLTQVESALASAQIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQK 97 Query: 118 FLQG 121 L Sbjct: 98 SLNA 101 >gi|78222075|ref|YP_383822.1| preprotein translocase subunit SecF [Geobacter metallireducens GS-15] gi|78193330|gb|ABB31097.1| protein translocase subunit secF [Geobacter metallireducens GS-15] Length = 302 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 89/300 (29%), Positives = 143/300 (47%), Gaps = 5/300 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSIC---LLFTHGLNYGIDFKGGIQLGVLANRP 588 I FM + + ISI+ +I I + N GIDF GG + + +P Sbjct: 1 MEFIGKTHIDFMGMKKFSFAISIVIAILGIIGIVRIALGTANMGIDFSGGTAVQLKFAQP 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + R L I D + Q LV++ +++ +K Sbjct: 61 VHIDRAREALAKHGIHDANLQELKTGNKLLVKVGKTSLPQGNAADLIQTAFQKEL-TGNT 119 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 ++++ +GP I +L + +V V IS I +LIYI RF + F +GA+ + D+ Sbjct: 120 FVVESSTEIGPAIGDKLRKDTLVAVAISMIGILIYIAWRFDFTFGVGALVATLHDVLAMF 179 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 F L E NL + AVLT+ GYS+ D VVV+DR+R+N+ T S + + SINE Sbjct: 180 AVFFLLDKEVNLLFITAVLTIAGYSLTDTVVVFDRIRENLHKNTK-DSLETIFNFSINEV 238 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ T++ F++ + +GG VI FA+ + GI+V SS+F+A+PI+ Sbjct: 239 LSRTIITALTTFLAAGSLYFFGGEVIHDFALALVVGILVGVYSSVFVASPIVEVWGRRPK 298 >gi|152980440|ref|YP_001352043.1| preprotein translocase SecD subunit [Janthinobacterium sp. Marseille] gi|151280517|gb|ABR88927.1| preprotein translocase SecD subunit [Janthinobacterium sp. Marseille] Length = 619 Score = 206 bits (523), Expect = 2e-50, Method: Composition-based stats. Identities = 166/511 (32%), Positives = 276/511 (54%), Gaps = 19/511 (3%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 + N LP + + ++ + LGLDLRGG H +++VD +N + RS Sbjct: 108 YLVAFNLLPNTP--GWLQSLNAAPMYLGLDLRGGVHFLMQVDTKAVMNKRVLGLQASARS 165 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+ + I + + + + + F D+ + +T L+ + + Sbjct: 166 ILRDKNIRHAGISRSGDSVEILFRDADTRNKARTVLTNELR--------ELVLTDAGSGE 217 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 + ++ L+ + Q + A++Q++ + +R++++G++E IQR G+ RI++Q+PG QD Sbjct: 218 DLKLVGALNPTALKQTVEDAVQQNITTLSKRVNELGVTEPLIQRQGADRIVVQMPGVQDV 277 Query: 200 SRLRQLLGTTAKMSFHKVLPN-----NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254 SR + ++G TA + V FG + ++ I+G ++ Sbjct: 278 SRAKDIIGKTATLEVRLVDETVTRGTEETAAIPFGSELFKVGKNAPVVLYKDPIITGEYI 337 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV---LTAPVINQA 311 + A+A+FD H+P V I + G RR E TR +GK +A+VL + + + Sbjct: 338 SSASASFDQN-HQPSVSIDLNGDGGRRMREATRTRVGKAMAIVLFEKNKGEVLTVATIRD 396 Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371 + QI+G + E A LA +LRAGSL + I+EER +G LG+++I KG A + G Sbjct: 397 ELGARFQITGMGSAEAASDLALLLRAGSLAAPMEIIEERTIGPQLGAENITKGFDATLYG 456 Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431 + I +FMI+ Y +G + F++ +N++L +ALLSLL ATLTLP IA I L +G+A+D+N Sbjct: 457 FIAIGIFMIIYYRAFGFFSVFALAVNLMLLIALLSLLQATLTLPGIAAIALTLGMAIDAN 516 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +L+NERIREE R S ++ MGF RA++TI DSN+T +IA + L FG GAVRGFA+ Sbjct: 517 VLINERIREELRAGHSPQTAISMGFERAWATILDSNVTTMIAGLALLIFGSGAVRGFAVV 576 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 L IL S+F+A+ + R ++ KK + Sbjct: 577 HCLGILTSIFSAVFVSRGVVNLWYGRKKKLT 607 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 88/201 (43%), Gaps = 4/201 (1%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A+ + + + I +GP++ E I KG + IA+ I++ I + Sbjct: 409 SAEAASDLALLLRAGSLAAPMEIIEERTIGPQLGAENITKGFDATLYGFIAIGIFMIIYY 468 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + F ++ L +++ + +L L +AA+ +G +++ V++ +R+R+ + Sbjct: 469 R-AFGFFSVFALAVNLMLLIALLSLLQATLTLPGIAAIALTLGMAIDANVLINERIREEL 527 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 + S + I + +++ I+ L + ++G + FA+ GI+ + Sbjct: 528 RA---GHSPQTAISMGFERAWATILDSNVTTMIAGLALLIFGSGAVRGFAVVHCLGILTS 584 Query: 809 ASSSIFIAAPILLFIYDWRAK 829 S++F++ ++ Y + K Sbjct: 585 IFSAVFVSRGVVNLWYGRKKK 605 Score = 42.8 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 29/124 (23%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I+ ++ +G+L LPNF +S +++ Sbjct: 3 RYPLWKYIIIAVALLLGVLYTLPNFFGESPA-------------------------VQIS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI----QNKITLSFADSRFKENIADKVTL 117 ++ LKK+GI + Q + + F ++ + + Sbjct: 38 SAKATVKVDSSLMSQVEQALKKDGIQYDGIVYETIGTQGTVRVRFPNTDIQFKAKGILEK 97 Query: 118 FLQG 121 L Sbjct: 98 DLNT 101 >gi|87200088|ref|YP_497345.1| protein translocase subunit secF [Novosphingobium aromaticivorans DSM 12444] gi|87135769|gb|ABD26511.1| protein translocase subunit secF [Novosphingobium aromaticivorans DSM 12444] Length = 325 Score = 206 bits (523), Expect = 2e-50, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 171/302 (56%), Gaps = 6/302 (1%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L+PD I F++ R ISI+ S L+ T GLN G+DF GG + V R Sbjct: 1 MKLLKLVPDHTNIHFLKWRVPFYVISIILMAASWGLVLTKGLNLGVDFIGGQMIRVTFER 60 Query: 588 PVD--LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG---DSVAQTRVLEMVKKKI 642 + + +R + L G+ Q + +R++ G D+ ++ + I Sbjct: 61 SAEAPVGELREQVGRLGYGEPIIQRYGKPNEISIRMKLPEGADHDAALADKMARTITADI 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + I + V K+S+EL + ++++A+ YIW+RF+W F +GA+ L+ Sbjct: 121 KKNHGDARIDGVDSVSGKVSKELGWDAFKALGLASLAVAAYIWLRFEWQFGVGALFALVH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+T TLG FAL G+EF+L VAA+LTLIGYS+ND +VVYDR+R+NMK + + +L+D Sbjct: 181 DVTLTLGLFALTGMEFDLNIVAALLTLIGYSLNDTIVVYDRIRENMKKFRK-MPMPELLD 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 S+NETL R++ TS++ I+++ + + G VI F + GI V SSI++AAPIL++ Sbjct: 240 LSVNETLARTIVTSLSMLITLVALLLLGPDVIFGFTAAITLGIFVGTYSSIYMAAPILIW 299 Query: 823 IY 824 + Sbjct: 300 LK 301 >gi|206889268|ref|YP_002248127.1| protein-export membrane protein SecF [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741206|gb|ACI20263.1| protein-export membrane protein SecF [Thermodesulfovibrio yellowstonii DSM 11347] Length = 301 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 90/292 (30%), Positives = 157/292 (53%), Gaps = 8/292 (2%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSVV 594 I F+ ++ + +S + I I +F N G+DF GG+ L + ++PV L+ V Sbjct: 8 TNIDFLGKKYIALALSCIMIILGIFAIFQIHAGKANLGVDFAGGLSLQIRFSQPVTLAEV 67 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R+ L+ I D Q + ++ + Q + + +K+ +T P I++ Sbjct: 68 RTVLDKAGIKDADIQEL--PTEKKILIKLKKQQEGIQDTIEKALKENLTAKEP--IIESV 123 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 +GPKI R + ++ + +LIYI IRFK++F++GA D+ LG F + Sbjct: 124 TEIGPKIGERTKRDALFAILAATAGILIYIAIRFKFHFSIGATVATFHDVMAVLGIFYIL 183 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRSV 773 E NL ++A+LT+ GYS+ D VVV+DR+R+N+ ++ L++KSINE L R++ Sbjct: 184 DKEINLIFISALLTIAGYSLTDTVVVFDRIRENLGKVAKGTMTLEALMNKSINEVLSRTI 243 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 TS+ ++ + + +GG V+ FA+ M GI+V SSIF+A+P++L + Sbjct: 244 VTSLTTLMAAVALFFFGGEVLHDFALAMILGILVGTYSSIFVASPVVLLLGK 295 >gi|313668905|ref|YP_004049189.1| protein-export membrane protein [Neisseria lactamica ST-640] gi|313006367|emb|CBN87830.1| putative protein-export membrane protein [Neisseria lactamica 020-06] Length = 311 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 164/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS+L I ++ L GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMGYGKLTTFISLLTFIAAVFFLVAKGLNFSVEFTGGTVMEVQYRQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L++GDI Q K+ ++RL + G + AQ + V + + P Sbjct: 61 VNKMRDRLDTLKMGDIQVQALGTNKHIMIRLPNKEGVTSAQ--LSNRVMDLLKKDNPDVA 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSREN 298 Query: 830 NAR 832 R Sbjct: 299 IGR 301 >gi|331009938|gb|EGH89994.1| multidrug/solvent transporter [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1044 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ + F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALISTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + V+ Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 10/242 (4%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAI----PMAFGIVVAASSSIFIAAP 818 + G V ++ +LPMA +GGS F+I MA +VVA S+ + A Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALISTPALCAT 495 Query: 819 IL 820 +L Sbjct: 496 ML 497 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + V S S + +S N + L Sbjct: 778 RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGE 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + + + Sbjct: 1009 ITAVILAIFWVPLFFVSVSGLFKSKKK 1035 >gi|326794835|ref|YP_004312655.1| protein-export membrane protein SecF [Marinomonas mediterranea MMB-1] gi|326545599|gb|ADZ90819.1| protein-export membrane protein SecF [Marinomonas mediterranea MMB-1] Length = 304 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 164/287 (57%), Gaps = 5/287 (1%) Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 I FM R S+L + SI L T GL +G+DF GG + V + +L V Sbjct: 1 MKVTNIPFMAMRKIVAMFSVLLILISIGSLATKGLQFGLDFTGGTLVEVKYDEAPNLDDV 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R+ L D+ QNF + +VR+ ++ E++ ++Q + Sbjct: 61 RAVLAQNNYSDVVVQNFGSPTDVVVRMANSYTATLGD----EVLVALKENGKVGVSLQRS 116 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 E VG ++ EL +G +G++++ +++Y+ +RF++ F++ ++ L D+ TLG F+LF Sbjct: 117 EFVGAQVGEELREQGGLGMLLALAIVMLYVAVRFQFKFSIASVAALAHDVVITLGVFSLF 176 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 IEF+LT +AA+L +IGYS+ND +VV DR+R+N ++ + +LI++SIN+TLGR++ Sbjct: 177 EIEFDLTVLAALLAVIGYSLNDTIVVCDRIRENFRIMRETEP-EELINESINQTLGRTII 235 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 TSM ++ + ++GG I +F+ + GIV+ SSIF+AA +LL Sbjct: 236 TSMTTLFVLVVLFLFGGEAINNFSFALLVGIVIGTYSSIFVAANLLL 282 >gi|126461219|ref|YP_001042333.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides ATCC 17029] gi|126102883|gb|ABN75561.1| protein translocase subunit secF [Rhodobacter sphaeroides ATCC 17029] Length = 324 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 177/312 (56%), Gaps = 7/312 (2%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 R L P+ I F A G S+ S+ T GLN+GIDF+GG + + Sbjct: 1 MAFRLKLCPEKTNIDFFWAAPVTFGFSVFLMAASLVAWLTLGLNFGIDFRGGTTIRTEST 60 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKK 640 + VD++ R+ LE +GDIS +VR+ Q + V++ Sbjct: 61 QAVDVAAYRAALEGQDLGDISITEVFDPGFRADQHVAMVRIGAQDATQSITPEQIGQVEE 120 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + P T + E VGPK+S ELIR I+ V + + +YIW+RF+W FALG++ L Sbjct: 121 ALKTVDPSITFPSVESVGPKVSGELIRSAILAVAAACAGIAVYIWLRFEWQFALGSVAAL 180 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 I D+ T+G FALF I+F+LT VAA+LT++GYS+ND VVV+DR+R+N+ Y ++ RD+ Sbjct: 181 IHDVLVTIGVFALFQIKFDLTTVAALLTVLGYSINDTVVVFDRLRENLVKY-KTMPLRDV 239 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ++ S+NETL R++ T M I+++ + V+GG VI F + FG+V+ SS+++A I+ Sbjct: 240 MNLSVNETLSRTIMTLMTTLIALVSLLVFGGDVIRGFVFAITFGVVIGTYSSVYMAKNIV 299 Query: 821 LFIYDWRAKNAR 832 L++ R + Sbjct: 300 LYLGVDRGGPKK 311 >gi|254253198|ref|ZP_04946516.1| Preprotein translocase subunit SecD [Burkholderia dolosa AUO158] gi|124895807|gb|EAY69687.1| Preprotein translocase subunit SecD [Burkholderia dolosa AUO158] Length = 673 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 158/516 (30%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ + I + ++ + ++F+D++ E+ + + + Sbjct: 160 ASDARTLLRDKNIRDGGVSRVDKSVVINFSDAQTAEDARKALAASITELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQVPVLLKKDVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FMI Y +G+++ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + I+ Y R K + Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608 Score = 40.1 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 21/120 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L LPNF ++ + + + ++ LD Sbjct: 3 RYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQ----VSSGKATVKLD------------ 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + L L S K F I + D+ + + D + L Sbjct: 47 -----STTLTQVESALASAHIKPDDITFENTATNANIRVRLKDTDTQLRVKDLLQKSLNA 101 >gi|330872898|gb|EGH07047.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 622 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 166/539 (30%), Positives = 275/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE S+ Q+ N I L F D +E V + Sbjct: 154 EGEVKSLLRKEKARYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + +F++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 156 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + V + + + ++ L G + + + Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + I+I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.5 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALTDA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|126725448|ref|ZP_01741290.1| protein-export membrane protein SecF [Rhodobacterales bacterium HTCC2150] gi|126704652|gb|EBA03743.1| protein-export membrane protein SecF [Rhodobacterales bacterium HTCC2150] Length = 321 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 111/304 (36%), Positives = 177/304 (58%), Gaps = 6/304 (1%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P+ F R G SI+ + SI + F GLN+GIDF+GG + ++ Sbjct: 1 MRLRLVPENTKWDFFRVAPITFGASIVVFLASIAIYFVVGLNFGIDFRGGTSIRTVSENS 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGE-----KNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 VD++ R LE L +GD+S VR++ Q G+ A +++E + + Sbjct: 61 VDVAAYRRALEELNLGDVSISQVFDPARPDINVAQVRIEDQGGEEAASAKMIENAEIALK 120 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 I + E VGPK+S ELI ++ V+ + A+ +Y+W+RF+W FA+GAI +L+ D Sbjct: 121 AIDETIVFSSVESVGPKVSGELIVSAMISVLSALAAVCVYVWLRFEWQFAVGAIASLVHD 180 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + T+G F+L I+F+LT +AA+LT++GYS+ND VVV+DR+R+N++ + + DL++ Sbjct: 181 VVITIGLFSLLQIQFDLTIIAALLTIVGYSLNDTVVVFDRVRENLRKF-KKLVLSDLLNV 239 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 S+NETL R+ TS +++ + GG VI F M +GIV+ SS+F+AA IL F+ Sbjct: 240 SVNETLSRTTMTSFTTLLALFALFYLGGDVIHGFVFAMIWGIVIGTYSSVFVAATILNFL 299 Query: 824 YDWR 827 R Sbjct: 300 GVKR 303 >gi|94497997|ref|ZP_01304561.1| acriflavin resistance protein B [Sphingomonas sp. SKA58] gi|94422580|gb|EAT07617.1| acriflavin resistance protein B [Sphingomonas sp. SKA58] Length = 1058 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 86/681 (12%), Positives = 180/681 (26%), Gaps = 43/681 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GLL + +FP P + ++ Sbjct: 8 RPIFAWVIAIVVMLAGLLAI-----RSLPVAQFPEIAPPA-------------VTIQTSY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 L+ + + LK + FS + ITL+F + +V Sbjct: 50 PGANAQTLESTTTQIIEQQLKGIDNLRYFSSTSDGSGNLSITLTFEQGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ L ++++ D I + + I D + Sbjct: 110 KLSQATPLLPQEVQQQGLRVGKSTSSFLLIAAVYTDDGIHDQEDAADFIAATLQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP ++ L TT + N G + Sbjct: 170 TGVGDTQLFGSQ-YAMRIWLDPYKMANLRITTGDVKSAIQAQNAQVSAGQIGGAPAPEGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + Sbjct: 229 ALNATVTAQSRL-------------RTAEEFEKIRLRSNSDGSVVLLSDVARVELGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 G + + T+E L N Sbjct: 276 GFGVKFNGHPASGFGIKLAPGANALDTVEAVKDRVNELSKNFPTWVKYDFPVDNSKFVTL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + L+ ++ + ++ LA+L G T+ ++ Sbjct: 336 SVEQVIHTLFEAILLVFVVMFIFLQNWRATLIPTIAVPVVLLGALAVLYAAGFTINTLTL 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERLIQDEGLTPKEAARRSMDEISGALIGIGLVLSAVFLP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ S+++S+ A+ + A+ I+ K RF Sbjct: 456 MAFFGGSTGVIFRQFSITIVSSMILSVLVALILTPALCAAIL--KPASHGHDQWSGRFGS 513 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 I F R GV L Y + G + + Sbjct: 514 IFGRFFGWFNRTFDKGVARYGQGVEKVERRWVRTMLLYLLIVIGMAFIFLRLPSGFLPEE 573 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + + + + E++ ++ D + + + + Sbjct: 574 DQGIIIAQLSLPAGSTLEETERSLTRMRRHYLVDEKSNVEAVFTIAGFGFVGQGQNVGIA 633 Query: 654 TEIVGPKISRELIRKGIVGVI 674 + R+ + + Sbjct: 634 FARMKDWADRKGAENAVPAIA 654 Score = 82.4 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 86/235 (36%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V LS V + + + +++ ++ ++++ P Sbjct: 260 VLLSDVARVELGAENYGFGVKFNGHPASGFGIKLAPGANALDTVEAVKDRVNELSKNFPT 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + K + + I + + + + + ++I + W L + + + Sbjct: 320 WVKYDFPVDNSKFVTLSVEQVIHTLFEAILLVFVVMFIFLQNWRATLIPTIAVPVVLLGA 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 L G N + ++ IG V+D +VV + + + ++ ++ +S++E Sbjct: 380 LAVLYAAGFTINTLTLFGMVLAIGLLVDDAIVVVENV--ERLIQDEGLTPKEAARRSMDE 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G + + LPMA +GGS F+I + ++++ ++ + + Sbjct: 438 ISGALIGIGLVLSAVFLPMAFFGGSTGVIFRQFSITIVSSMILSVLVALILTPAL 492 Score = 58.9 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 69/208 (33%), Gaps = 9/208 (4%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + F+G + ++ PG S + + Sbjct: 822 ERFNGVPSMNIQGGAAPGVSSGTAMQAMEEHAAKLPAGIGFSWNGISYEEQTSGGQAPYV 881 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + ++I + + + W + + + L + + L G+ ++ ++T Sbjct: 882 YALSMLIVFLCLA---ALYESWSVPIAVMLVVPLGVLGAVIAATLAGLNNDIYLQVGLIT 938 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 IG S + +++ + + M+ +S ++ L + TS A VLP+A+ Sbjct: 939 TIGVSAKNAILIVEFAEEKMRE---GLSPARAALEAGKLRLRPILMTSFAFIFGVLPLAL 995 Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSI 813 G + + G++ A +I Sbjct: 996 STGAGAGGQNAIGWAVVGGMLSATVLAI 1023 >gi|325577686|ref|ZP_08147961.1| protein-export membrane protein SecD [Haemophilus parainfluenzae ATCC 33392] gi|325160431|gb|EGC72557.1| protein-export membrane protein SecD [Haemophilus parainfluenzae ATCC 33392] Length = 616 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 149/524 (28%), Positives = 280/524 (53%), Gaps = 39/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE I Sbjct: 104 NLAPATPAWLSSIGANPMKWGLDLRGGVRFLMEVDMNSALAKRQEQLQDTLRNELRKEKI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +++ T++ ++ A + + + +++ Sbjct: 164 QFTAIKNGDKFGTTVTLENADQMSKAARIIRQL-----------HPTLDVSDIGDNTLNL 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS+ ++ + + AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++ Sbjct: 213 ALSEASLTESRNLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + + G+ D G + + + G H+ +++ Sbjct: 273 LGATATLEFRIVNSLVNPESAARGMLPSDTEIKYDRQGRPVALYKRAVLGGEHIINSSSG 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D T P V ++ D G + T+ KP+A + Sbjct: 333 LDQHTSTPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKSEE 392 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q S QI+G + A L+ +L++G+L + IVEER +G LG+ ++ Sbjct: 393 VINVATIQGRFSSNFQITGVSSSAEAQNLSMLLKSGALIAPVQIVEERTIGPSLGAQNVE 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A GL+ +++FM+V Y +G++A F++ +N++L + L+S+L ATLT+P IAGIV Sbjct: 453 QGIDASFWGLIAVIVFMLVYYKVFGIIASFALVINIVLLVGLMSILPGATLTMPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G++VD+N+L+ ERI+EE R + + +++ G++ A+++IFD+N+T ++ ++L+ G Sbjct: 513 LTLGMSVDANVLIFERIKEEIRNGRPIQQAINEGYNGAFTSIFDANLTTILTAIILYAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G ++GFA+T+ L + ISMFTAI+ RA++ F+ K+++ + I Sbjct: 573 TGPIQGFAVTLALGVAISMFTAITGTRAIVNFLYGGKRLEKLSI 616 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +GI IA+++++ + +K F + A L+++I +G ++ Sbjct: 441 TIGPSLGAQNVEQGIDASFWGLIAVIVFMLVYYKV-FGIIASFALVINIVLLVGLMSILP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ +G SV+ V++++R+++ ++ + I++ N Sbjct: 500 GATLTMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRPIQQAINEGYNGAFTSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G I FA+ +A G+ ++ ++I I+ F+Y + Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAVTLALGVAISMFTAITGTRAIVNFLYGGKRLEK 613 Score = 42.8 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ IG L +LPN + + + + D Sbjct: 4 RYPLWKNLMVILVVAIGALYSLPNIYGEDPAVQISGTRGQ-----------------QAD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 E+++ LK+ + S+ I F ++ + DK+ L Sbjct: 47 ---------TTALTEVQNVLKENNLSTKSIVLENGSILARFNNTDDQLLAKDKIAEKL 95 >gi|329897045|ref|ZP_08271817.1| Protein-export membrane protein SecD (TC 3.A.5.1.1) [gamma proteobacterium IMCC3088] gi|328921485|gb|EGG28871.1| Protein-export membrane protein SecD (TC 3.A.5.1.1) [gamma proteobacterium IMCC3088] Length = 627 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 166/525 (31%), Positives = 269/525 (51%), Gaps = 36/525 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDL GG H LEVD D + + Y ++ L++ I Sbjct: 107 NLAPTTPKWLTDLGAQPMKLGLDLSGGVHFKLEVDVDAALERRHEYYLTAVKKLLRENRI 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 Q + + + +E+ + ++ L + + + Sbjct: 167 RGLVDLDEQGAVVSQYGSEQEREDAR-------GAIADEMPELMLDRLDEQEGQFGLKVS 219 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +++ Q+I +A+ Q++ +R R++++G+SE +QR G +RI+++LPG QD + +++L Sbjct: 220 MTEQAKAQLIDYAVAQNLTTLRNRVNELGVSEPLVQRQGRNRIVVELPGIQDTAEAKRIL 279 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF-LRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 G A + F V +N++ + D G +E V I+G ++ A A FD Sbjct: 280 GKVANLEFRLVASSNARPSEKQRFEYRSEDRLGMSEWLERDVIITGERVSNAAAGFDQNG 339 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301 +P V IS D G TR+N+ + + + D + Sbjct: 340 -RPNVSISLDSEGGTLMSRATRNNVKRRMGVLFIERKYKTSYDVAADGSDVITKIPYDEK 398 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + Q + QI+G + A LA MLRAG+L ++ VEER VG LG+++I Sbjct: 399 RILTAPVIQQALGAQFQITGLDSPLEASELALMLRAGALAAPISFVEERTVGPSLGAENI 458 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 G ++ GL L+V+FM+V Y +G VA ++ N++L LA +SLLGATLTLP IAGIV Sbjct: 459 ELGVKSVQIGLALVVIFMLVYYRAFGAVAVVALGCNLVLLLAFMSLLGATLTLPGIAGIV 518 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ RIREE S ++ GF +A STI D+NIT LI V+L+ G Sbjct: 519 LTVGMAVDANVLIFSRIREELNGGSSAQMAIHKGFEQALSTILDANITTLIVAVILYAVG 578 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 G ++GFA+T+ L IL SMFTAI RA++ I +K+K++ I Sbjct: 579 TGPIKGFAVTLSLGILTSMFTAIIGTRALINLIYGGRKVKTLSIG 623 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 105/277 (37%), Gaps = 5/277 (1%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 SI L+ N G + + D++ S++ + D Sbjct: 344 SISLDSEGGTLMSRATRNNVKRRMGVLFIERKYKTSYDVAADGSDVITKIPYDEKRILTA 403 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + Q+Q + E + + + + VGP + E I G+ Sbjct: 404 PVIQQALGAQFQITGLDSPLEASELALMLRAGALAAPISFVEERTVGPSLGAENIELGVK 463 Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731 V I ++I++ + ++ F A+ L ++ L F +L G L +A ++ +G Sbjct: 464 SVQIGLALVVIFMLVYYR-AFGAVAVVALGCNLVLLLAFMSLLGATLTLPGIAGIVLTVG 522 Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791 +V+ V+++ R+R+ + S + I K + L + ++ I + + G Sbjct: 523 MAVDANVLIFSRIREELNG---GSSAQMAIHKGFEQALSTILDANITTLIVAVILYAVGT 579 Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 I FA+ ++ GI+ + ++I ++ IY R Sbjct: 580 GPIKGFAVTLSLGILTSMFTAIIGTRALINLIYGGRK 616 >gi|254504242|ref|ZP_05116393.1| protein-export membrane protein SecF [Labrenzia alexandrii DFL-11] gi|222440313|gb|EEE46992.1| protein-export membrane protein SecF [Labrenzia alexandrii DFL-11] Length = 302 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 120/284 (42%), Positives = 181/284 (63%), Gaps = 3/284 (1%) Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 M R +SI+ + S+ FT G+NYGIDFKGG + + + P D+ +RS L SLQ Sbjct: 1 MWLRKISFPLSIVLVVASLAGFFTVGMNYGIDFKGGTIIEIKTDGPADIGFIRSELSSLQ 60 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 +GDI Q F + L+R++ QPG +AQ V+ V+ + + E+VGP++S Sbjct: 61 LGDIQVQEFGAPDDILIRIEEQPGGELAQQAVVAKVRTIFADDNVDF--RRVEVVGPRVS 118 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 EL R G + V S +A++ YIW RF+W+FA+GAI T D+ T+G F L ++F+L++ Sbjct: 119 SELARAGAIAVAASLLAIMFYIWFRFEWHFAVGAILTTANDVVVTIGLFVLLQLDFSLSS 178 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 +AAVLT+IGYS+ND VVVYDR+R+N++ Y +++D+SINETL R+ TS+ ++ Sbjct: 179 IAAVLTIIGYSLNDTVVVYDRIRENLRKYKKR-PLTEILDQSINETLSRTTMTSVTTLLA 237 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +L + ++GG VI SF + M FGIV+ SSIF+AAP L+ + Sbjct: 238 LLALYIFGGEVIQSFTLAMIFGIVIGTYSSIFLAAPFLILLNLR 281 >gi|293390419|ref|ZP_06634753.1| protein-export membrane protein SecD [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950953|gb|EFE01072.1| protein-export membrane protein SecD [Aggregatibacter actinomycetemcomitans D7S-1] Length = 616 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 164/524 (31%), Positives = 285/524 (54%), Gaps = 39/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + N + GLDLRGG ++EVD + ++ + D LR+ L+KE Sbjct: 104 NLAPATPKWLSSIGGNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRKEKY 163 Query: 87 GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +++ I N T ++ +S L V L + T+E +S+ Sbjct: 164 QYSAIKSIDNFSTGVTLTNSEQ-----------LSDVQRYLRKQHPNLDVRATSENTLSL 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS + +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+++LPG QD +R +++ Sbjct: 213 GLSDSVLNEARESAIEQNLSILRKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + + + G+ D + ++ + + G H+ A+ Sbjct: 273 LGATATLEFRIVNASANLEAAARGMVPSDSEVKYDRNNRPVVLYKRAVLGGEHITNASYG 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D T P V ++ D G + TR N+ KP+A + + Sbjct: 333 VDQNTSLPQVSVTLDSEGGEIMSQTTRLNLKKPMATLYVEYKDSGKKDENGKTILQKHEE 392 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q + QI+G + A LA +LR+G+L + IVEER +G LG+ ++ Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVE 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A GL+++V FM++ Y K+G++A+ ++ N++L + L+SLL ATLT+P IAGIV Sbjct: 453 QGLQASFWGLMIVVAFMVIYYRKFGIIANIALIANIVLLVGLISLLPGATLTMPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G++VD+N+L+ ERI+EE R + + +++ G+S A+S+IFD+N+T ++ V L+ G Sbjct: 513 LAVGMSVDANVLIFERIKEEIRNGRPIQQAINEGYSGAFSSIFDANLTTILTAVALYAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G ++GFAIT+ L I ISMFTAI+ RA++ F+ K++ + I Sbjct: 573 TGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKRIDKLSI 616 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 81/174 (46%), Gaps = 5/174 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +G+ + ++ ++ I ++ F + A LI +I +G +L Sbjct: 441 TIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYR-KFGIIANIALIANIVLLVGLISLLP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ +G SV+ V++++R+++ ++ + I++ + Sbjct: 500 GATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIR---NGRPIQQAINEGYSGAFSSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ ++ + + G I FAI ++ GI ++ ++I I+ F+Y + Sbjct: 557 ANLTTILTAVALYAVGTGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKR 610 Score = 44.7 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG+L ALPN + + RG Sbjct: 4 RYPLWKNLMVIFVVAIGILYALPNLYGEDPAVQISGT------------RG--------- 42 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 +++S LK + S+ I + F ++ + DK+T L Sbjct: 43 -----QEANSAVLSDVQSMLKDNNLTTKSIVLENGSILVRFNNTDTQLLAKDKITEKL 95 >gi|87307750|ref|ZP_01089893.1| protein-export membrane protein secD [Blastopirellula marina DSM 3645] gi|87289364|gb|EAQ81255.1| protein-export membrane protein secD [Blastopirellula marina DSM 3645] Length = 1276 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 16/225 (7%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 ++ S A+ ++ E+ ++ +G +++ ++ + I +++S + + Sbjct: 1051 TEWTVQLSGAKENASKIFDSIRNELSSTPVWPSSSNIGAQVAGDMQQMAIFALVLSLVGV 1110 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLG----------FFALFGIE---FNLTAVAAV 726 + YIW RF+ F L A+ L+ D+ TLG F I+ +L VAA Sbjct: 1111 VAYIWFRFQNLAFGLAAVVALVHDVLITLGALALTTWLQYVFGFLQIDEMKISLPVVAAF 1170 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 LTLIGYS+ND +VV+DR+R+ ++ + ++ D+++ SIN+TLGR++ TS+ FI V+ + Sbjct: 1171 LTLIGYSLNDTIVVFDRIRE-VRGKSHELTI-DMVNASINQTLGRTILTSLTTFIVVVIL 1228 Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 GG + SF+ + GI V SSIFIA+P+L+++ + K Sbjct: 1229 FFLGGEGVHSFSFALVVGIFVGTYSSIFIASPVLVWLMNREKKRG 1273 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 139/655 (21%), Positives = 255/655 (38%), Gaps = 87/655 (13%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M W + + IG+ + + P G+DL+GG L+ E+ Sbjct: 115 MPTYGWRLAVIFCTMVIGVTAVVRYWPP----------------KFGIDLQGGVILIYEI 158 Query: 61 DEDD---FVNGF-------------------------LQMYSDELRSFLKKEGIGVFSMR 92 DED+ ++ + L++ + G+ +R Sbjct: 159 DEDETKIYLAEQKKTGEDQKPSETESTADQDGGTAYNMNELLANLKNRVNPSGVREVVIR 218 Query: 93 QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + ++ + ++ + + + + ++V ++++ Sbjct: 219 AYGSKQVEVIIPNAESADLAV--IKDKITTA------GMLEFMIVANANDHVTLLNRARE 270 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 Q R + G +E + Sbjct: 271 SKQRGE----------RYVVSSTGRAEGKWVGIRKDEEGEYQWPNFGSFTASTDG----- 315 Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271 P + GF+ + + ++G +L A +D V+ Sbjct: 316 ------SPVQTSAGFLVRGGQSTGQPLQVLMKMEPKPLTGGYLTAARRTYDTNNGSLAVE 369 Query: 272 ISFDEMGARRFFEVTRDN----IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 + + GA ++TRDN + ++ + + Q + + I+G FT Sbjct: 370 FNLNSTGASLMSKLTRDNLPDDTRERQLGIVMDDYIVSAPSVQGVIGDRGIITGRFTEAD 429 Query: 328 AGILAAMLRAGSLPI--KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 L +L+AG LP+ + + E+ + A LG D+I KG A+ L L+++FM + Y Sbjct: 430 IEKLTGVLQAGKLPVVLRKEPISEQTISATLGDDTIRKGQWAVGISLSLVLVFMAIYYRV 489 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 GLVA ++ LN++L LA + L A LTLP IAG+VL +G++VD+N+L+ ERIREE Sbjct: 490 AGLVACAAVLLNLVLILAAMILFNADLTLPGIAGLVLTVGMSVDANVLIYERIREELNHG 549 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505 S+ +L GFS+A +TI D+N+T LI +VL+ G VRGFA+T+ L I++SMFTAI Sbjct: 550 ASLRMALVNGFSKATTTIVDANLTTLITALVLYRIGTDQVRGFAVTLVLGIVMSMFTAIF 609 Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565 R + + + ++ + P + F+ R + IS++ + + + Sbjct: 610 CSRVFFDIAEKKRWLTTLKMMPTASG------AKFDFLGKRQMAMSISLVLIVIGVIAVG 663 Query: 566 THGLN-YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 G + IDF GG + V + ++ VR + K + Sbjct: 664 ARGKTIFDIDFNGGSSVQVYLKEALPIATVREMVSEKLPDVSISSVTLEGKENQI 718 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 97/255 (38%), Gaps = 4/255 (1%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 ++ G + L + L + I + Sbjct: 372 LNSTGASLMSKLTRDNLPDDTRERQLGIVMDDYIVSAPSVQGVIGDRGIITGRFTEADIE 431 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 ++ +++ +V + + + + + IRKG V IS +L+++ I ++ Sbjct: 432 KLTGVLQAGKLPVVLRKEPISEQTISATLGDDTIRKGQWAVGISLSLVLVFMAIYYRV-A 490 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L A ++L++ L LF + L +A ++ +G SV+ V++Y+R+R+ + Sbjct: 491 GLVACAAVLLNLVLILAAMILFNADLTLPGIAGLVLTVGMSVDANVLIYERIREEL---N 547 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812 S R + ++ V ++ I+ L + G + FA+ + GIV++ ++ Sbjct: 548 HGASLRMALVNGFSKATTTIVDANLTTLITALVLYRIGTDQVRGFAVTLVLGIVMSMFTA 607 Query: 813 IFIAAPILLFIYDWR 827 IF + R Sbjct: 608 IFCSRVFFDIAEKKR 622 >gi|121611002|ref|YP_998809.1| preprotein translocase subunit SecF [Verminephrobacter eiseniae EF01-2] gi|121555642|gb|ABM59791.1| protein translocase subunit secF [Verminephrobacter eiseniae EF01-2] Length = 321 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 157/301 (52%), Gaps = 4/301 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS + ++ L T GL+ ++F GG + + + D Sbjct: 1 MEFFRIRKDIPFMKQALVFNAISFITFALAVVFLLTRGLHLSVEFTGGTVMELAYGQSAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647 L+ +R + +L ++ QNF ++ ++RL D R E V + + P Sbjct: 61 LAKIRQTVSALGYPEVQVQNFGTARDVMIRLPTLNKDMDKSLTSARQSEQVLAALQAVDP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++ TE VGP++ EL+ G++ + + I ++IY+ +RF+W F + AI + D+ Sbjct: 121 QVKLRRTEFVGPQVGEELVHGGLMALAMVVIGIVIYLALRFEWKFGVAAIIANLHDVVII 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGFFA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + Y + +ID +I Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MDTAAVIDHAITS 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + VL M +GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 240 TMSRTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKR 299 Query: 828 A 828 Sbjct: 300 E 300 >gi|146283379|ref|YP_001173532.1| preprotein translocase subunit SecD [Pseudomonas stutzeri A1501] gi|145571584|gb|ABP80690.1| secretion protein SecD [Pseudomonas stutzeri A1501] Length = 575 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 150/526 (28%), Positives = 266/526 (50%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD + + L + E++S L+KE + Sbjct: 60 NLAPTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMEKAIETRLNVSEGEVKSLLRKERV 119 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ +++ + L FAD + D + + + + Sbjct: 120 RYRSLPNLKDAVQLGFADQETLSAAQSLIRKNF--------TDFELTTSERNGQFVLRLT 171 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L++ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 172 LTEAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 231 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F ++ R+ +E + I+G + A A++D Sbjct: 232 GKTANLEFRLAAESD-APRASTETFEFREEGRPPVQLERTLIITGDQVTDAQASYDENG- 289 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA--------------- 311 +P V+I D G TR N+G+ +AV+ + + Q Sbjct: 290 RPQVNIRLDGHGGDLMNRATRSNVGRSMAVIFIEQRPLTRYVRQMVDGVEQEVRVETFQE 349 Query: 312 ------------IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + +I+G + LA +LRAG L + EER +G LG++ Sbjct: 350 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAE 409 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I G A + G + + +FM+++Y +G++A ++ N++ AL+S+L ATLTLP IAG Sbjct: 410 NIKLGVQAAMWGFLFVAIFMVLIYKFFGVLATIALLFNMVALTALMSMLNATLTLPGIAG 469 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE S+ ++ GF RA+S I D N+T L+ +LF Sbjct: 470 IVLTMGMAVDANVLIFSRIREEIANGMSIQRAIHEGFDRAFSAILDGNLTTLLVGGILFA 529 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G ++GFA+T+ + IL SMFTAI + R M+ I + +K + I Sbjct: 530 MGTGPIKGFAVTLSIGILTSMFTAIIVTRGMVNLIYGGRDLKKLWI 575 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 82/204 (40%), Gaps = 4/204 (1%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + + +GP + E I+ G+ + + + I++ + Sbjct: 373 NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIKLGVQAAMWGFLFVAIFMVLI 432 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +K+ F + A L+ ++ ++ L +A ++ +G +V+ V+++ R+R+ Sbjct: 433 YKF-FGVLATIALLFNMVALTALMSMLNATLTLPGIAGIVLTMGMAVDANVLIFSRIREE 491 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + +S + I + + + ++ + + G I FA+ ++ GI+ Sbjct: 492 IA---NGMSIQRAIHEGFDRAFSAILDGNLTTLLVGGILFAMGTGPIKGFAVTLSIGILT 548 Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831 + ++I + ++ IY R Sbjct: 549 SMFTAIIVTRGMVNLIYGGRDLKK 572 >gi|28868622|ref|NP_791241.1| protein-export membrane protein SecD [Pseudomonas syringae pv. tomato str. DC3000] gi|213971536|ref|ZP_03399647.1| protein-export membrane protein SecD [Pseudomonas syringae pv. tomato T1] gi|301386141|ref|ZP_07234559.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. tomato Max13] gi|302060703|ref|ZP_07252244.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. tomato K40] gi|28851860|gb|AAO54936.1| protein-export membrane protein SecD [Pseudomonas syringae pv. tomato str. DC3000] gi|213923728|gb|EEB57312.1| protein-export membrane protein SecD [Pseudomonas syringae pv. tomato T1] gi|331019398|gb|EGH99454.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 622 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 166/539 (30%), Positives = 275/539 (51%), Gaps = 46/539 (8%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L P +L + LGLDL GG H +LEVD D ++ L++Y Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 E++S L+KE S+ Q+ N I L F D +E V + Sbjct: 154 EGEVKSLLRKEKARYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + L+ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++L Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 PG QD + +++LG TA + F + + R+ VE + I+G Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294 + A A+FD +P V+I+ D G TR N+G+ + Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVN 383 Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 + + + + Q+ + +I+G + LA +LRAG L + Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 EER +G LG+D+I KG A + G++ + +F++ +Y +GL+A ++ LN+++ LAL+S Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LLGATLTLP IAGIVL +G+AVD+N+L+ RIREE +V +++ GF RAY+ I D+ Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 N+T L+ +LF G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 R + V + + + ++ L G + + + Sbjct: 374 TTTYTRQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + I+I +++ F L A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDFKK 619 Score = 43.5 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + S+ + L + + D V L Sbjct: 51 VDRAAKALTDA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98 >gi|113969727|ref|YP_733520.1| preprotein translocase subunit SecF [Shewanella sp. MR-4] gi|117919886|ref|YP_869078.1| preprotein translocase subunit SecF [Shewanella sp. ANA-3] gi|113884411|gb|ABI38463.1| protein translocase subunit secF [Shewanella sp. MR-4] gi|117612218|gb|ABK47672.1| protein translocase subunit secF [Shewanella sp. ANA-3] Length = 315 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 166/287 (57%), Gaps = 3/287 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + F+R +S + S+ L T G+N+G+DF GG + + +PVDL+V+R+ Sbjct: 9 RTVNFLRHALPISIMSAILVFGSLVSLATKGINWGLDFTGGTVVEMEFTQPVDLNVLRTK 68 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + ++ QNF ++ LVRL + G S ++ V ++ + E V Sbjct: 69 LSAPELDGAVVQNFGSSRDVLVRLSVKEGVSSDVQ--VKSVMAAAQQVDAGVQQKRVEFV 126 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ +EL +G + V+++ I ++IY+ RF+W A G++ L D+ TLG F++F +E Sbjct: 127 GPQVGKELAEQGGLAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSVFQLE 186 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +A VLT++GYS+ND +VV+DR+R+N S ++++ SI +T+ R++ T+ Sbjct: 187 FDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKSEP-EEVVNVSITQTMSRTIITTG 245 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 ++V+ + + GG++I FA + GI V SSI++A+ + + + Sbjct: 246 TTLVTVVALFLKGGTMIHGFATALLLGIFVGTYSSIYVASYLAIKLG 292 >gi|329298301|ref|ZP_08255637.1| preprotein translocase subunit SecD [Plautia stali symbiont] Length = 615 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 162/538 (30%), Positives = 284/538 (52%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 99 FVVALNLAPATPRWLT---------MLAAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 149 Query: 73 YSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 +D LRS L+++ I ++ +I N T + F D ++ S L + Sbjct: 150 NADGLRSDLREKNIPYTNVSKIANYGTEIRFRDGASRDAAI-----------SYLTPRHR 198 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 ++ + + ++ + + +A++Q++ I+R R++Q+G++E +QR G+ RI++ Sbjct: 199 DLVITSAGSDTLRAMMIDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 258 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V + G + +G ++ + Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNTSVDPSAAASGRVPGDSEVKKTREGQPVVLYKR 318 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T++ + ++P V+IS D G T+DNIGKP+A + + Sbjct: 319 VILTGDHITDSTSS-MDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGK 377 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 Q+ +I+G A L+ +LRAG+L + IVE Sbjct: 378 KDANGRAILVKQEEVINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVE 437 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G +G +I +G A + GL+ ++FM+V Y K+GL+A ++ N++L + ++SLL Sbjct: 438 ERTIGPTMGQQNITQGLEACLCGLIASIIFMVVFYKKFGLIATSALLCNLVLIVGIMSLL 497 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDAN 557 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T LI ++L+ G+++GFAIT + I SMFTAI RA++ + K++ + I Sbjct: 558 VTTLIKVIILYAVSTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLVYSGKRINKLSI 615 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + ++ I +G+ + IA +I++ + +K F L A + L+ ++ +G +L Sbjct: 440 TIGPTMGQQNITQGLEACLCGLIASIIFMVVFYK-KFGLIATSALLCNLVLIVGIMSLLP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ ++ S + I + V Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I V+ + I FAI A GI + ++I I+ +Y + N Sbjct: 556 ANVTTLIKVIILYAVSTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLVYSGKRINK 612 >gi|15613800|ref|NP_242103.1| preprotein translocase subunit SecF [Bacillus halodurans C-125] gi|10173853|dbj|BAB04956.1| protein-export membrane protein [Bacillus halodurans C-125] Length = 311 Score = 206 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 9/287 (3%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I F++ R IS LF++ I +L T GLN GIDF+ G ++ V + V++ E Sbjct: 8 IDFVKHRKKFFLISGLFTLIGIIVLLTFGLNLGIDFESGSRIEVQGESTLTSEEVQAEFE 67 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 ++ + + + + N V P Sbjct: 68 AIGFEPDDITLAGNNNELAYATFSRDLSEEEISTIQNHF------NDAYGLMPNISTVSP 121 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 + +EL R ++ V+I+ I ++IY+ IRF+ + + AI L D + F+L IE N Sbjct: 122 TVGKELARNALISVLIALIGIIIYVTIRFELLYGVAAIVALFHDAFFIIAIFSLLQIEVN 181 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTS 776 + +AAVLT++GYS+ND +V +DR+R+NMK D+++KS+ +TL RS+ Sbjct: 182 VPFIAAVLTIVGYSINDTIVTFDRIRENMKYAKRVKGFDDLADIVNKSLVQTLARSINMV 241 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + + + V+GG I SFA + G+V SS+F+A+ + L Sbjct: 242 LTVMFAAAAIFVFGGEAIRSFAFALLIGLVAGTYSSMFLASQLWLVW 288 >gi|94501958|ref|ZP_01308466.1| protein-export membrane protein SecD [Oceanobacter sp. RED65] gi|94425900|gb|EAT10900.1| protein-export membrane protein SecD [Oceanobacter sp. RED65] Length = 623 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 149/524 (28%), Positives = 262/524 (50%), Gaps = 36/524 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + ++LGLDL GG H ++EVD F+ + Y D L+ ++E + Sbjct: 106 NLAPTTPQWLVDMGAGPMTLGLDLSGGVHFLMEVDMQQFLTQRIDGYRDTLKRNFREERL 165 Query: 87 GVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 + + +I F D ++ + V + + + + Sbjct: 166 RYKRAVLDEEKRIKYEFIDEETRDKAENFVRREYAEFLTDTRDE--------EGRHWLVL 217 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ I ++ +A++Q++ IR R++++G++E +QR G +RI+I+LPG QD + +++ Sbjct: 218 TMTPAKIKELEDYALKQNLTTIRNRVNELGVAEPMVQRQGRNRIVIELPGVQDTAAAKKI 277 Query: 206 LGTTAKMSFHK-VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 LG A + F P S+ + +E V ++G +++ A FD Sbjct: 278 LGKAANLEFRLEAKPGASRFSSEEFEFKNPERGRTSARLEKSVIVTGDNVSNAQPAFDEN 337 Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI---------------- 308 +P V+I+ D G +VT+ I + + V+ + Sbjct: 338 G-QPQVNITLDSTGGALMGKVTKKAIKRRMGVLFIEHKTRTRYVERDGVEVPVEDKYTEK 396 Query: 309 ------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 G + A LA +LRAG+L + VEER VG +G ++I Sbjct: 397 KIISLATIQSALGSSFRITGLQAAEASELALLLRAGALAAPMYFVEERTVGPSMGKENID 456 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 G ++ GL L+++FMI Y +GL+A+ ++ +N+ L A++S LGATLTLP IAGIVL Sbjct: 457 LGVTSVKLGLALVLIFMIAYYRVFGLIANVALAVNLTLLTAVMSALGATLTLPGIAGIVL 516 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ RI+EE + +V ++ G+ +A+ TI D+NIT LI ++LF G Sbjct: 517 TVGMAVDANVLIFARIKEELKSGMNVQQAIHSGYDKAFLTILDANITTLIVAIILFAVGT 576 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 G V+GFA+T+ + I+ SMFTAI + RA++ I ++++ I I Sbjct: 577 GPVKGFAVTLSIGIITSMFTAIMVTRALVNLIYGGRRLQKIAIG 620 Score = 153 bits (386), Expect = 9e-35, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 88/216 (40%), Gaps = 4/216 (1%) Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675 + ++ A + + + VGP + +E I G+ V + Sbjct: 405 QSALGSSFRITGLQAAEASELALLLRAGALAAPMYFVEERTVGPSMGKENIDLGVTSVKL 464 Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 +LI++ ++ F L A L +++T + G L +A ++ +G +V+ Sbjct: 465 GLALVLIFMIAYYRV-FGLIANVALAVNLTLLTAVMSALGATLTLPGIAGIVLTVGMAVD 523 Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795 V+++ R+++ +K + ++ + I ++ + ++ I + + G + Sbjct: 524 ANVLIFARIKEELK---SGMNVQQAIHSGYDKAFLTILDANITTLIVAIILFAVGTGPVK 580 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 FA+ ++ GI+ + ++I + ++ IY R Sbjct: 581 GFAVTLSIGIITSMFTAIMVTRALVNLIYGGRRLQK 616 Score = 40.1 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 15/34 (44%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF 35 + W L +I +G++ ALPN P + Sbjct: 4 KYPLWKYCLILVISVLGVVYALPNLYPPDPAVQI 37 >gi|134294793|ref|YP_001118528.1| preprotein translocase subunit SecD [Burkholderia vietnamiensis G4] gi|134137950|gb|ABO53693.1| protein-export membrane protein SecD [Burkholderia vietnamiensis G4] Length = 673 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 158/516 (30%), Positives = 268/516 (51%), Gaps = 25/516 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 109 VVALNLQSASPRWLTAIHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ + I + ++ + ++F+D++ E+ + + + Sbjct: 160 ATDARALLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDALKALAASITELQWATQP----- 214 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ GS RI+++L Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N+ G + L++ V Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKDVIF 331 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRSVRAVSRENIGKPMAMVLFEKGKGEVLTV 390 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G I +FM+ Y +G+++ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 451 SVIWGFCAIAVFMVAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NER+REE R Q ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 FAI L IL SMF+A+ R ++ +K Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606 Score = 134 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + I+ G+ VI A+ +++ Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L +++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 464 VAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ + I + +++ I+ L + +G + +FAI G Sbjct: 523 REELRA---GQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + I+ Y R K + Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608 >gi|292487440|ref|YP_003530312.1| protein-export membrane protein SecD [Erwinia amylovora CFBP1430] gi|292898682|ref|YP_003538051.1| protein-export membrane protein [Erwinia amylovora ATCC 49946] gi|291198530|emb|CBJ45638.1| protein-export membrane protein [Erwinia amylovora ATCC 49946] gi|291552859|emb|CBA19904.1| Protein-export membrane protein secD [Erwinia amylovora CFBP1430] gi|312171543|emb|CBX79801.1| Protein-export membrane protein secD [Erwinia amylovora ATCC BAA-2158] Length = 615 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 156/518 (30%), Positives = 280/518 (54%), Gaps = 37/518 (7%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + + + + LGLDLRGG H ++EVD D + D LRS L+++ + ++R Sbjct: 110 PAWLATLSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSVPYVNVR 169 Query: 93 QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + N + + F D + ++ +T + ++ ++ ++ V+S Sbjct: 170 KTGNYGLEIRFRDDKTRDEAVSYLTTRHR-----------DMVINSSGSNALTAVMSDER 218 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++LG TA Sbjct: 219 MREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATAT 278 Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V + G +G ++ +V ++G H+ +T++ D Sbjct: 279 LEFRLVNTSVDATAAANGRVPGDSEVKDTREGQPVVLYKRVILTGDHITDSTSSNDEYN- 337 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 +P V+IS D G T+D++GK +A + + Sbjct: 338 QPQVNISLDSAGGNIMSNFTKDSVGKAMATLFVEYKDSGKKDANGRAILEKHEEVINVAN 397 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q+ +I+G A L+ +LRAG+L + IVEER +G +G+ +I +G A Sbjct: 398 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEAC 457 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GL+ ++FM+V Y K+GLVA ++ N++L + ++SLL ATLT+P IAGIVL + +A Sbjct: 458 LWGLIASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA 517 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI ++L+ G G+++G Sbjct: 518 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 577 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 FAIT + + SMFTAI RA++ + K++ + I Sbjct: 578 FAITTAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI 615 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 96/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ N ++ L G + + + Sbjct: 369 FVEYKDSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 428 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ + +K F L A + L+ ++ Sbjct: 429 LIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK-KFGLVATSALLANL 487 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ S + I + Sbjct: 488 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 V ++ I V+ + G I FAI A G+ + ++I I+ + Sbjct: 545 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLM 604 Query: 824 YDWRAKNA 831 Y + N Sbjct: 605 YGGKRINK 612 >gi|261822532|ref|YP_003260638.1| preprotein translocase subunit SecD [Pectobacterium wasabiae WPP163] gi|261606545|gb|ACX89031.1| protein-export membrane protein SecD [Pectobacterium wasabiae WPP163] Length = 604 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 164/538 (30%), Positives = 287/538 (53%), Gaps = 46/538 (8%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + + L A P +L + + LGLDLRGG H ++EVD D + + Sbjct: 88 FVVALNLAPATPTWLRLLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 138 Query: 73 YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 D LRS L+++ I ++R+I N + + F D++ +++ +T + + Sbjct: 139 TMDSLRSDLREKNIPYAAVRKIDNYGVEIRFRDAQTRDDGLSYLTSRHRNL--------- 189 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 +L ++ + V+S + + +A++Q++ I+R R++Q+G++E +QR GS RI++ Sbjct: 190 --VLSSSGGNLMRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVV 247 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246 +LPG QD +R +++LG TA + F V + G DG+ ++ + Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNSDADATAAANGRVPGDSEVKNMRDGSPVVLFKR 307 Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306 V ++G H+ +T++ D +P V+IS D G T+D+IGK +A + + Sbjct: 308 VILTGDHITDSTSSNDEYN-RPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGK 366 Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 Q+ +I+G A L+ +LRAG+L + IVE Sbjct: 367 KDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 426 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG +I +G A + GL+ +LFM+ Y K+G++A ++ N++L + ++SLL Sbjct: 427 ERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIVGVMSLL 486 Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 ATLT+P IAGIVL + +AVD+N+L+NERI+EE +S+ ++ G+ A+S+I D+N Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSIQQAIHEGYKGAFSSIVDAN 546 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T LI ++L+ G G+++GFAIT + I SMFTAI RA++ + K++ + I Sbjct: 547 VTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI 604 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D + S+ N ++ L G + + Sbjct: 358 FVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ +K F + A + L+ ++ Sbjct: 418 LIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK-KFGVIATSALVANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ + + S + I + Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSIQQAIHE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 V ++ I V+ + G I FAI A GI + ++I I+ + Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLL 593 Query: 824 YDWRAKNA 831 Y + N Sbjct: 594 YGGKRINK 601 >gi|229592459|ref|YP_002874578.1| preprotein translocase subunit SecD [Pseudomonas fluorescens SBW25] gi|229364325|emb|CAY52076.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Pseudomonas fluorescens SBW25] Length = 623 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 163/526 (30%), Positives = 273/526 (51%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + LGLDL GG H +LEVD D ++ L++Y +++S L+KE + Sbjct: 108 NLAQTTPAWLRSIGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKL 167 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q+ I L FAD +E + + D ++ + Sbjct: 168 RYRSLPQLNGAIQLGFADEASREQARALIRKNFND-FDIVPADLNGQAVLR-------LA 219 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S I ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 220 MSPAKIAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRIL 279 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F + + R+ + L+E + I+G + A A F Sbjct: 280 GKTANLEFRLAAEPGATRA-TSEEFEFREGNRPPALIERGLIITGDQVTDAKAGFGEHGT 338 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299 P V+I D G TR N+G+ + + Sbjct: 339 -PEVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQRPVTTYTKQMVNGVEKDVPVQTFKE 397 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 398 EKKIISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 457 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+I +Y +G++A ++ N+++ LAL+SLLGATLTLP IAG Sbjct: 458 NITKGVDAALWGMLFVSLFIIAIYRFFGIIATVALAGNMVMLLALMSLLGATLTLPGIAG 517 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE +V +++ GF RA++ I DSN+T L+ +LF Sbjct: 518 IVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFA 577 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 578 MGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 623 Score = 150 bits (378), Expect = 8e-34, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 94/250 (37%), Gaps = 5/250 (2%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ V ++ + + Q++ Q E+ Sbjct: 375 VTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGLNGQGESSELALLLR 434 Query: 643 TEIVPLSTIQNTE-IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + E +GP + + I KG+ + + + ++I +++ F + A L Sbjct: 435 AGGLAAPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAIYRF-FGIIATVALA 493 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 494 GNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMTVQRAI 550 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + +++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 551 NEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 610 Query: 822 FIYDWRAKNA 831 I+ R Sbjct: 611 LIFGGRDFKK 620 >gi|253574930|ref|ZP_04852270.1| protein-export membrane protein SecF [Paenibacillus sp. oral taxon 786 str. D14] gi|251845976|gb|EES73984.1| protein-export membrane protein SecF [Paenibacillus sp. oral taxon 786 str. D14] Length = 301 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 88/305 (28%), Positives = 160/305 (52%), Gaps = 9/305 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + + ++ + +SI+ +I I L GLNY +DFK G + + ++P+ Sbjct: 1 MTFVSFKKNLDYIHLSKYFYTLSIVLTIAGIICLAFFGLNYSVDFKAGSNVDISLSKPLT 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 VR L+++ I + G+ +R + + K + Sbjct: 61 ADQVRPILKNMGIEENEASISPGQDRMNIRFT------QVLSEENDAKLKAEIAKLDDKA 114 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 V P++++EL R I V+IS I ++IY+ IRF+W FA+ AI L+ D + Sbjct: 115 SFEVNTVDPEMAKELARNAIYAVLISCIGIIIYVGIRFEWRFAVAAIIALLHDAFMVISV 174 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINET 768 F++F +E +LT + AVLT+IGYS+ND +V++DR+R+N++ T +L++ S+++T Sbjct: 175 FSIFRLEVDLTFIVAVLTIIGYSINDTIVIFDRIRENLRFAKTKTRQDLINLVNVSVSQT 234 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + RS+YT++ F++ + + GG I F++ M G++ A SSIFIA+P+ + + Sbjct: 235 IMRSLYTALTVFVAAFFLLILGGESIRMFSLAMVIGLLFGAYSSIFIASPLWFLLKSKQK 294 Query: 829 -KNAR 832 K A+ Sbjct: 295 HKPAK 299 >gi|253681545|ref|ZP_04862342.1| protein-export membrane protein SecF [Clostridium botulinum D str. 1873] gi|253561257|gb|EES90709.1| protein-export membrane protein SecF [Clostridium botulinum D str. 1873] Length = 289 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 144/286 (50%), Gaps = 5/286 (1%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS++ + + L GLNYGIDFKGG + + + ++ +++ Sbjct: 7 KTKLWFTISLILILIGMSFLGIKGLNYGIDFKGGTIVTIEMGNNFN-QKIKEQADNIIKK 65 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 + + ++ DS + ++ +K K + + VGP + E Sbjct: 66 YDKTASSYIANKTQLEIKSNNLDSDSINKMFGELKTKYKLKDK--ALISQNKVGPSVGNE 123 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L +K + +II+ IAMLIYI RF+ F + AI L+ DI TLG +A+ I N +A Sbjct: 124 LKKKSLGALIIATIAMLIYIGFRFEIKFGIAAILGLVHDILITLGVYAITQIPVNTPFIA 183 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT++GYS+ND +V++DR+R+N + ++++ SI +T+ RS+ T + +++ Sbjct: 184 AMLTIVGYSINDTIVIFDRIRENKRKL-RGRDMVEIVNLSITQTMSRSINTVLTTLFTIV 242 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + V+ + F P+ GIV A SSIFI++PI + + + Sbjct: 243 AVYVF-VPAVRDFTFPLIIGIVCGAYSSIFISSPIWILLRKFGKNK 287 >gi|224418272|ref|ZP_03656278.1| preprotein translocase subunit SecF [Helicobacter canadensis MIT 98-5491] gi|253827596|ref|ZP_04870481.1| protein export protein SecF [Helicobacter canadensis MIT 98-5491] gi|253511002|gb|EES89661.1| protein export protein SecF [Helicobacter canadensis MIT 98-5491] Length = 323 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 85/304 (27%), Positives = 167/304 (54%), Gaps = 4/304 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 F++ +G+ +S++ I S+ L G G+DF GG + + ++ Sbjct: 1 MDFFKHNKIYDFVKMSNYGIVLSLILFIGSLILFVKPGFTLGVDFAGGTIIQIQYSKEAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ +R LES++ + + G ++ SV Q E+ + + Sbjct: 61 LADIRQKLESVEDFKGAQVSEFGSPQEILIRLATATSSVNQDIGEEV--TNLLKDTGDFQ 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I+ +IVGPK+ EL KGI+ + ++ I+++ Y+ R++W FAL +I LI D+ G Sbjct: 119 IRRVDIVGPKVGDELREKGILALTLAIISIMAYVAYRYEWRFALASILALIHDVVIAAGA 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF ++ +L +AA+LTLIGYS+ND ++++DR+R+ + S + +++++++++ TL Sbjct: 179 VVLFDVDLSLEVIAALLTLIGYSINDTIIIFDRIRETIG-MRASNNLKEVVNEALSATLS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY-DWRAK 829 R++ TS+ F VL + ++GG +I F++PM G +V + SSIF+A+ +++ + D Sbjct: 238 RTMLTSLTVFFVVLTLYLFGGEIIKGFSLPMLIGSIVGSYSSIFVASKLVMILGFDLEKY 297 Query: 830 NARI 833 + ++ Sbjct: 298 HKKL 301 >gi|119897195|ref|YP_932408.1| preprotein translocase subunit SecD [Azoarcus sp. BH72] gi|119669608|emb|CAL93521.1| protein-export membrane protein SecD [Azoarcus sp. BH72] Length = 624 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 174/520 (33%), Positives = 277/520 (53%), Gaps = 32/520 (6%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + LL A P++L + LGLDLRGG H +L++D + L Sbjct: 106 VVALNLLSASPSWLTSIHA---------LPMYLGLDLRGGVHFLLQLDMPGALLKRLDAL 156 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 S +LR+ ++ + + + + + + F ++ +E + Sbjct: 157 SGDLRTLMRDKNVRHAGITREGTTVVIRFREAAQREAARSAIQ----------GSTADLQ 206 Query: 134 LLVTTTEKEI---SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 L+ E L+ + +AI+Q++ + RI+++G++E IQ+ G+ RI+ Sbjct: 207 LVDRDDGSEDLKLIATLTPQAQQTMREYAIKQNISTLHNRINELGVAEPVIQQQGAERIV 266 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLP------NNSKKGFMFGVRFLRDSDGNQYLVE 244 +QLPG QD ++ + +LG TA + V FG R+ LV+ Sbjct: 267 VQLPGVQDVAKAKDILGRTATLEVRMVDDTPGALEQALTGNVPFGTELYRERGRGPLLVK 326 Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDG 300 +V ++G L A FD +T++ V ++ D GAR F ++TR+N+GK + G Sbjct: 327 KQVVLTGERLTDAQPGFDGQTNEAAVHLTLDAAGARIFRDLTRENVGKRMAILLIEKGKG 386 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 V+TAPVI I G+ QISG+ A +A +LRAGSL + I+EER VG LG+++ Sbjct: 387 EVVTAPVIRTEIGGGRVQISGSMNTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAEN 446 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I KG + + G V I +FM V Y +GLV+ ++ N++L +ALLSLL ATLTLP IA + Sbjct: 447 IAKGFHSTLWGFVAIAVFMCVYYAVFGLVSTLALAANLLLLVALLSLLQATLTLPGIAAM 506 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L +G+A+D+N+L+NERIREE R S ++ G+ RA+STI DS++T+LIA + L F Sbjct: 507 ALALGMAIDANVLINERIREELRNGVSPQAAIAAGYDRAFSTILDSSVTSLIAGIALLVF 566 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 G G VRGFA+ L +L SMF+AI + R ++ I ++ Sbjct: 567 GSGPVRGFAVVHCLGLLTSMFSAILVSRMLINLIYGRRRK 606 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 89/212 (41%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I VGP + E I KG + +A+ Sbjct: 403 VQISGSMNTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAENIAKGFHSTLWGFVAIA 462 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + + F L + L ++ + +L L +AA+ +G +++ V++ Sbjct: 463 VFMCVYYAV-FGLVSTLALAANLLLLVALLSLLQATLTLPGIAAMALALGMAIDANVLIN 521 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ +S + I + + +S+ + I+ + + V+G + FA+ Sbjct: 522 ERIREELR---NGVSPQAAIAAGYDRAFSTILDSSVTSLIAGIALLVFGSGPVRGFAVVH 578 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 G++ + S+I ++ ++ IY R K ++ Sbjct: 579 CLGLLTSMFSAILVSRMLINLIYGRRRKIDKL 610 Score = 39.3 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 26/121 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W IL + GL+ LPNF + ++V Sbjct: 3 RYPLWKNILIGLALLWGLIYTLPNFYGEVPA-------------------------VQVS 37 Query: 62 EDDFV-NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 +D + + L+ GI + N + FA + + D + Sbjct: 38 SAKATLKLEPASVTDRVAAILQGAGIEHDGIFADANSVRARFASTELQLRAKDAIERAFN 97 Query: 121 G 121 Sbjct: 98 T 98 >gi|268680240|ref|YP_003304671.1| protein-export membrane protein SecF [Sulfurospirillum deleyianum DSM 6946] gi|268618271|gb|ACZ12636.1| protein-export membrane protein SecF [Sulfurospirillum deleyianum DSM 6946] Length = 323 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 162/292 (55%), Gaps = 3/292 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM+ V ++ + S+ L+ T G +YG+DF GG + + L +R +L Sbjct: 10 YNFMKYGRSFVLSTLFLAAISLVLIVTKGFDYGVDFAGGTVVQIKYEAKAPLDKIREDLA 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 ++ + G +V S + + + + + + I+ +IVGP Sbjct: 70 KDKMFAGAQITEFGSDEEIVIRFSTV--SESVGQDIGDHIRTLLKDTGSFDIRKIDIVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 KI EL KGI+ I++ I +LIY+ +RF+W FA+ +I TL+ DIT TLG LF IE + Sbjct: 128 KIGSELREKGIISAILAVIGILIYVAVRFEWKFAVASIITLVHDITITLGAIILFNIEIS 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AAVLTLIGYS+ND ++++DR+R+ ++ T +++F ++I+ +++TL R+ TS+ Sbjct: 188 LDVLAAVLTLIGYSLNDTIIIFDRIREELEE-TKNMNFSEIINICVSKTLSRTTITSLLV 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 F VL + ++GG +I F+ M G+++ SSIFI+AP L I K Sbjct: 247 FFVVLTLYIFGGEIIHGFSFTMLLGVIIGTYSSIFISAPFLTLIGFSVEKYK 298 >gi|152978723|ref|YP_001344352.1| preprotein translocase subunit SecD [Actinobacillus succinogenes 130Z] gi|150840446|gb|ABR74417.1| protein-export membrane protein SecD [Actinobacillus succinogenes 130Z] Length = 616 Score = 205 bits (521), Expect = 3e-50, Method: Composition-based stats. Identities = 152/524 (29%), Positives = 282/524 (53%), Gaps = 39/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + + + GLDLRGG ++EVD + ++ + D +++ L+KE I Sbjct: 104 NLAPATPAWLSSIGGSPMKWGLDLRGGVRFLMEVDMNTALSKRQEQLQDSIKTELRKEKI 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +++ +N ++ + + + + T + IS+ Sbjct: 164 QYAAVQNGENFSSIVTLVNPEQRFPALQLLRKA-----------HPNLTVTDTNDTTISL 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS + + AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+++LPG QD +R +++ Sbjct: 213 ALSDAALIEARDSAIEQNLNILRKRVGELGVAEAVIQRQGAERIVVELPGIQDTARAKEI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + + + DG + K + G H+ ++A Sbjct: 273 LGATATLEFRLVNTNVTPEAMRRNIVPSDTEIQYQPDGTPVALFKKSMLGGEHIINSSAG 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D +T V ++ D G ++T+ N+ KP+A + + Sbjct: 333 IDNQTGGTQVSVTLDAEGGDIMSQITKLNLKKPMATLYVEYKDSGKKDANGKVVLEKHAE 392 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q QI+G+ T+ A L+ +LR+G+L + IVEER VG LG+ ++ Sbjct: 393 VISVATIQGRFGSNFQITGSGTMAEAQNLSVLLRSGALIAPIQIVEERTVGPSLGAQNVE 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A + GL ++++F ++ Y +G +A ++ +N+IL + L+SLL ATLT+P IAGI+ Sbjct: 453 QGLKAGLWGLAIVIVFCLIYYKLFGFIACLALCVNMILVVGLMSLLPGATLTMPGIAGII 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G++VD+N+L+ ERI+EE R + + ++D G++ A+++IFD+N+T ++ ++VL+ G Sbjct: 513 LSVGMSVDANVLIFERIKEEIRNGRPIQQAIDEGYNGAWTSIFDANLTTILTSIVLYAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L + ISMFTAI+ R ++ +I K+++ + I Sbjct: 573 TGPVKGFAITLSLGVAISMFTAITGTRMLVNWIYGGKRVEKLSI 616 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 79/172 (45%), Gaps = 5/172 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716 GP + + + +G+ + ++++ I +K F A L +++ +G +L G Sbjct: 443 GPSLGAQNVEQGLKAGLWGLAIVIVFCLIYYKL-FGFIACLALCVNMILVVGLMSLLPGA 501 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 + +A ++ +G SV+ V++++R+++ ++ + ID+ N + Sbjct: 502 TLTMPGIAGIILSVGMSVDANVLIFERIKEEIR---NGRPIQQAIDEGYNGAWTSIFDAN 558 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ + + G + FAI ++ G+ ++ ++I ++ +IY + Sbjct: 559 LTTILTSIVLYAVGTGPVKGFAITLSLGVAISMFTAITGTRMLVNWIYGGKR 610 Score = 40.1 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L ALPN + + RG Sbjct: 4 RFPLWKNLMVIFMIAIGALYALPNIYGEDPAVQISGT------------RG--------- 42 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + ++++ L + S+ I F ++ + DK+ L Sbjct: 43 -----HEANEDTLSDVQNLLAGNRLTTKSIVLENGTILARFNNTNDQLLAKDKIVEKL 95 >gi|59712574|ref|YP_205350.1| preprotein translocase subunit SecD [Vibrio fischeri ES114] gi|59480675|gb|AAW86462.1| SecYEG protein translocase auxillary subunit [Vibrio fischeri ES114] Length = 618 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 150/524 (28%), Positives = 275/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D ++ + + R+ L++ I Sbjct: 104 NLAPLTPDWLTSIGAAPMKLGLDLRGGVHFLMEVDMDAAMSKLIGQQEESFRTDLREAKI 163 Query: 87 GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + + ++ + D + + ++ Sbjct: 164 RYRAIRDSGKDSVEVVLRNEEQLAEAKKVLSDAHR--------DMTFVESESNGQFKLIA 215 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ IIR R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 216 TFTEQRLQEIRNYAVEQNITIIRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275 Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G D +G +++ ++ + G + ++ Sbjct: 276 LGATATLEFREVDDKADLAAAASGRAPAGSEIKEDRNGRPVVLKKRIILGGASITD-ASS 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + +R NIGK +A V Sbjct: 335 SADEYGRPQVNISLDSEGGSKMTAFSRKNIGKLMATVFTEYKDSGRRTPEGRVILSKTEE 394 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 395 VINQATIQSALGRSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A + G+V +++F +V Y +GLVA+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 455 MGIQACIWGMVAVMIFTLVYYRGFGLVANLALMANLVLIIGVMSMIPGATMTLPGIAGIV 514 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 575 TGAIKGFAVTLSIGILTSMFTAIVGTRCVINLVYGGKRVDKLSI 618 Score = 142 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 89/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G + + ++ +I +GP + ++ I GI I +A Sbjct: 407 RSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 466 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++I+ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 467 VMIFTLVYYR-GFGLVANLALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ + + I + ++ I+ + + G I FA Sbjct: 526 LIFERIREELRD---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 582 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I ++ +Y + Sbjct: 583 VTLSIGILTSMFTAIVGTRCVINLVYGGKR 612 Score = 43.1 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + I L ALPN + + G+ + + Sbjct: 4 RFPLWKYLMVVSVLLISALYALPNLYGEDPAVQITG-------------SRGTEV--QAS 48 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D V L+ I S+ + + F D+ + + D + L Sbjct: 49 TLDVVAENLKN-----------NDIAYKSIAFENGSVLVRFNDTDAQISARDIINESL 95 >gi|257455239|ref|ZP_05620474.1| preprotein translocase subunit SecF [Enhydrobacter aerosaccus SK60] gi|257447201|gb|EEV22209.1| preprotein translocase subunit SecF [Enhydrobacter aerosaccus SK60] Length = 416 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 5/307 (1%) Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 I F++ +S + +I ++ + T GLN G+DF GG+ Sbjct: 82 EFSAEDFGGEKFFAGRRIINFLKVSKPFAILSAILTILALVAILTKGLNLGLDFTGGVSA 141 Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 V+ +PV + V+S L S +I D Q K LVRL Q + + Sbjct: 142 TVVYEQPVQQAQVQSALSSHKINDSVVQYLGSNKEILVRLPPQ----KQIEGLSNSLDAA 197 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +TI+N ++VG ++ E+ + ++ + M IY+ +RF+ ALGA+ L Sbjct: 198 LDLPNNNATIKNIDVVGSQVGNEIYISSLGATALALVCMFIYVMVRFQAKLALGAVLALF 257 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 D T+G FALFG F+LT +AAVL+LIGYS+ND +VV+DR+R+N + S ++ Sbjct: 258 HDSIITVGIFALFGWPFDLTVLAAVLSLIGYSINDTIVVFDRIRENFRR-VRGASPTQIV 316 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + S+ ETL R++ T + V+ M + GG + F++ + G+++ SS++IA+ I L Sbjct: 317 NLSLTETLRRTIMTISTVLLVVVAMLLLGGESLHWFSVALLIGLILGTFSSVYIASAIPL 376 Query: 822 FIYDWRA 828 ++ R Sbjct: 377 WLGMSRK 383 >gi|237749369|ref|ZP_04579849.1| preprotein translocase SecD subunit [Oxalobacter formigenes OXCC13] gi|229380731|gb|EEO30822.1| preprotein translocase SecD subunit [Oxalobacter formigenes OXCC13] Length = 623 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 159/511 (31%), Positives = 279/511 (54%), Gaps = 22/511 (4%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 N LP + ++ ++ + LGLDLRGG H +++VD D +N + R+ Sbjct: 108 YSIAFNLLPNTP--QWLQSLHALPMYLGLDLRGGVHFLMQVDVDAALNSRIAGMQTSARN 165 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+++ I + ++++ I + F D++ ++ + V + Sbjct: 166 LLREKNIRYSGLIRVRDTIEMQFTDAQTRQQAEKIFKGQMSDVTLR-----------EDG 214 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 ++ + LS + QV ++++Q++ + +R++++G++E IQ+ G+ RI++QLPG QD Sbjct: 215 GNKLILSLSPEAVKQVKENSVKQNIATLSKRVNELGVNEPVIQQQGADRIVVQLPGVQDV 274 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKK-----GFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254 SR + ++G TA + V + ++ G R G ++ I+G ++ Sbjct: 275 SRAKDIIGRTATLEVRMVDESVTRGTEESVAVPLGSELFRLGKGAPVVLYKDPVITGDYI 334 Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQA 311 + A+A+FD +P V I + G R+ + TR IGK +A+VL + + + Sbjct: 335 SNASASFDQYQ-QPAVSIDLNGDGGRKMRQATRGKIGKLMAIVLFEKGKGEVLTVASIRD 393 Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371 K QI+G T E A LA +LRAGSL + I+EER +G LG+++I KG + + G Sbjct: 394 ELGSKFQITGMNTPEAATDLALLLRAGSLAAPMQIIEERTIGPQLGAENITKGFLSTLYG 453 Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431 ++ +FMI+ Y +GL + ++ +N++L +A+LSL+ TLTLP IA I L +G+A+DSN Sbjct: 454 FAVVSIFMILYYMVFGLFSVIALSVNLLLLIAILSLMQITLTLPGIAAIALALGMAIDSN 513 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +L+NERIREE R + S ++ GF+ A++TI DSN+T LIA + L FG G +RGFA+ Sbjct: 514 VLINERIREELRMDHSPQTAISNGFAHAWATILDSNVTTLIAGLALLIFGSGPIRGFAVV 573 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 + IL S+F+A+ + R + +K + Sbjct: 574 HVIGILTSLFSAVFVSRGIANLWYGRRKKLT 604 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 89/205 (43%), Gaps = 4/205 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G + + + + + I +GP++ E I KG + + + I++ Sbjct: 402 TGMNTPEAATDLALLLRAGSLAAPMQIIEERTIGPQLGAENITKGFLSTLYGFAVVSIFM 461 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + + F L ++ L +++ + +L I L +AA+ +G +++ V++ +R+ Sbjct: 462 ILYY-MVFGLFSVIALSVNLLLLIAILSLMQITLTLPGIAAIALALGMAIDSNVLINERI 520 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ +++ S + I + +++ I+ L + ++G I FA+ G Sbjct: 521 REELRM---DHSPQTAISNGFAHAWATILDSNVTTLIAGLALLIFGSGPIRGFAVVHVIG 577 Query: 805 IVVAASSSIFIAAPILLFIYDWRAK 829 I+ + S++F++ I Y R K Sbjct: 578 ILTSLFSAVFVSRGIANLWYGRRKK 602 Score = 40.8 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44 R W ++ ++ G++ LPNF +S + S +I Sbjct: 3 RYPLWKYLVIAVAIVFGIIYTLPNFFGESPAVQISSVRSTVKI 45 >gi|51595281|ref|YP_069472.1| preprotein translocase subunit SecF [Yersinia pseudotuberculosis IP 32953] gi|108808674|ref|YP_652590.1| preprotein translocase subunit SecF [Yersinia pestis Antiqua] gi|108811064|ref|YP_646831.1| preprotein translocase subunit SecF [Yersinia pestis Nepal516] gi|145600082|ref|YP_001164158.1| preprotein translocase subunit SecF [Yersinia pestis Pestoides F] gi|149364966|ref|ZP_01887001.1| protein-export membrane protein SecF [Yersinia pestis CA88-4125] gi|153948560|ref|YP_001402080.1| preprotein translocase subunit SecF [Yersinia pseudotuberculosis IP 31758] gi|161484854|ref|NP_668324.2| preprotein translocase subunit SecF [Yersinia pestis KIM 10] gi|161511433|ref|NP_992131.2| preprotein translocase subunit SecF [Yersinia pestis biovar Microtus str. 91001] gi|162421217|ref|YP_001607724.1| preprotein translocase subunit SecF [Yersinia pestis Angola] gi|165926657|ref|ZP_02222489.1| protein-export membrane protein SecF [Yersinia pestis biovar Orientalis str. F1991016] gi|165935926|ref|ZP_02224496.1| protein-export membrane protein SecF [Yersinia pestis biovar Orientalis str. IP275] gi|166011128|ref|ZP_02232026.1| protein-export membrane protein SecF [Yersinia pestis biovar Antiqua str. E1979001] gi|166212914|ref|ZP_02238949.1| protein-export membrane protein SecF [Yersinia pestis biovar Antiqua str. B42003004] gi|167398817|ref|ZP_02304341.1| protein-export membrane protein SecF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421562|ref|ZP_02313315.1| protein-export membrane protein SecF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423396|ref|ZP_02315149.1| protein-export membrane protein SecF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025478|ref|YP_001721983.1| preprotein translocase subunit SecF [Yersinia pseudotuberculosis YPIII] gi|186894298|ref|YP_001871410.1| preprotein translocase subunit SecF [Yersinia pseudotuberculosis PB1/+] gi|218930218|ref|YP_002348093.1| preprotein translocase subunit SecF [Yersinia pestis CO92] gi|229838793|ref|ZP_04458952.1| SecYEG protein translocase auxillary subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896053|ref|ZP_04511223.1| SecYEG protein translocase auxillary subunit [Yersinia pestis Pestoides A] gi|229899361|ref|ZP_04514504.1| SecYEG protein translocase auxillary subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229901292|ref|ZP_04516414.1| SecYEG protein translocase auxillary subunit [Yersinia pestis Nepal516] gi|270489481|ref|ZP_06206555.1| protein-export membrane protein SecF [Yersinia pestis KIM D27] gi|294504916|ref|YP_003568978.1| protein export protein SecF [Yersinia pestis Z176003] gi|51588563|emb|CAH20171.1| preprotein translocase, IISP family, membrane subunit [Yersinia pseudotuberculosis IP 32953] gi|108774712|gb|ABG17231.1| protein translocase subunit secF [Yersinia pestis Nepal516] gi|108780587|gb|ABG14645.1| protein translocase subunit secF [Yersinia pestis Antiqua] gi|115348829|emb|CAL21783.1| protein-export membrane protein SecF [Yersinia pestis CO92] gi|145211778|gb|ABP41185.1| protein translocase subunit secF [Yersinia pestis Pestoides F] gi|149291379|gb|EDM41453.1| protein-export membrane protein SecF [Yersinia pestis CA88-4125] gi|152960055|gb|ABS47516.1| protein-export membrane protein SecF [Yersinia pseudotuberculosis IP 31758] gi|162354032|gb|ABX87980.1| protein-export membrane protein SecF [Yersinia pestis Angola] gi|165916071|gb|EDR34678.1| protein-export membrane protein SecF [Yersinia pestis biovar Orientalis str. IP275] gi|165921585|gb|EDR38782.1| protein-export membrane protein SecF [Yersinia pestis biovar Orientalis str. F1991016] gi|165990128|gb|EDR42429.1| protein-export membrane protein SecF [Yersinia pestis biovar Antiqua str. E1979001] gi|166205701|gb|EDR50181.1| protein-export membrane protein SecF [Yersinia pestis biovar Antiqua str. B42003004] gi|166960481|gb|EDR56502.1| protein-export membrane protein SecF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051321|gb|EDR62729.1| protein-export membrane protein SecF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057566|gb|EDR67312.1| protein-export membrane protein SecF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752012|gb|ACA69530.1| protein-export membrane protein SecF [Yersinia pseudotuberculosis YPIII] gi|186697324|gb|ACC87953.1| protein-export membrane protein SecF [Yersinia pseudotuberculosis PB1/+] gi|229681221|gb|EEO77315.1| SecYEG protein translocase auxillary subunit [Yersinia pestis Nepal516] gi|229687763|gb|EEO79836.1| SecYEG protein translocase auxillary subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229695159|gb|EEO85206.1| SecYEG protein translocase auxillary subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700976|gb|EEO89005.1| SecYEG protein translocase auxillary subunit [Yersinia pestis Pestoides A] gi|262362981|gb|ACY59702.1| protein export protein SecF [Yersinia pestis D106004] gi|262366902|gb|ACY63459.1| protein export protein SecF [Yersinia pestis D182038] gi|270337985|gb|EFA48762.1| protein-export membrane protein SecF [Yersinia pestis KIM D27] gi|294355375|gb|ADE65716.1| protein export protein SecF [Yersinia pestis Z176003] gi|320016375|gb|ADV99946.1| SecYEG protein translocase auxillary subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 322 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 86/301 (28%), Positives = 168/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR + G+S+L + SI ++ T G N+G+DF GG + + Sbjct: 5 YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLEN 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R L++ QNF ++ +VR+ G Q +++ + Sbjct: 65 PADLDQLRDTLQNAGFESPILQNFGSSRDVMVRMPPATGT-AGQELGNKIISVINESVDK 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 ++++ E VGP + +L + G + ++++ +++L+Y+ RF+W ALGA+ +L D+ T Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGALALLVALLSILVYVGFRFEWRLALGAVISLAHDVVIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+ND +VV DR+R+N + + ++++ S+ + Sbjct: 184 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++A+ + L + R Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVTIGTVSSIYVASALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 >gi|301063411|ref|ZP_07203947.1| export membrane protein SecF [delta proteobacterium NaphS2] gi|300442484|gb|EFK06713.1| export membrane protein SecF [delta proteobacterium NaphS2] Length = 351 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 98/348 (28%), Positives = 163/348 (46%), Gaps = 48/348 (13%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLL-FTHGLNYGIDFKGGIQLGVLANRPV 589 I + + F+ R +S + +I LL + G NYG+DF GG+ + + + V Sbjct: 1 MQFIKPGVNVNFIGKRKIAFILSSFMILATIFLLVWRGGPNYGVDFSGGVLVQIKMAQKV 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 S ++ L+ + + D Q F ++ + + + + K Sbjct: 61 SPSEIKKALKVVDLEDSIVQEFGEAGQLEYLIRIRKTEVELSSLGDRVEKALKAAFGDKV 120 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY------------------ 691 I+ E+VGPK+ ++L +K + + S + + IYI RF+ Sbjct: 121 EIRRVEMVGPKVGKDLRQKALFAIFYSILFIAIYISGRFELKWLMSIIMALCLAFVVYIT 180 Query: 692 ----------------------------FALGAITTLILDITKTLGFFALFGIEFNLTAV 723 +ALGAI +I D+T T+GFFAL E +L+ + Sbjct: 181 SGLGISVTWLILIALIVTLTLCLFLNLKYALGAIIAIIHDVTITVGFFALTEREISLSII 240 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 AA LT++GYS+ND ++V+DR+R+N++ + F + +++SINETL R++ TS I + Sbjct: 241 AAFLTIVGYSLNDTIIVFDRIRENVRHFRRK-PFEETMNQSINETLSRTILTSGTTLIVI 299 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 L + V GG VI FA + G+VV SSIF+A+PIL+ K A Sbjct: 300 LALFVLGGGVIHDFAFALLVGVVVGTYSSIFVASPILMIWEGRFGKKA 347 >gi|114046956|ref|YP_737506.1| preprotein translocase subunit SecF [Shewanella sp. MR-7] gi|113888398|gb|ABI42449.1| protein translocase subunit secF [Shewanella sp. MR-7] Length = 315 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 165/287 (57%), Gaps = 3/287 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + F+R +S + S+ L T G+N+G+DF GG + + +PVDL+V+R+ Sbjct: 9 RTVNFLRHALPISIMSAILVFGSLVSLATKGINWGLDFTGGTVVEMEFTQPVDLNVLRTK 68 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + ++ QNF ++ LVRL + G S ++ V ++ + E V Sbjct: 69 LSAPELDGAVVQNFGSSRDVLVRLSVKEGVSSDVQ--VKSVMAAAQQVDAGVQQKRVEFV 126 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ +EL +G + V+++ I ++IY+ RF+W A G++ L D+ TLG F++ +E Sbjct: 127 GPQVGKELAEQGGLAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSVLQLE 186 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +A VLT++GYS+ND +VV+DR+R+N S ++++ SI +T+ R++ T+ Sbjct: 187 FDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKSEP-EEVVNVSITQTMSRTIITTG 245 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 ++V+ + + GG++I FA + GI V SSI++A+ + + + Sbjct: 246 TTLVTVVALFLKGGTMIHGFATALLLGIFVGTYSSIYVASYLAIKLG 292 >gi|319941717|ref|ZP_08016039.1| translocase subunit secF [Sutterella wadsworthensis 3_1_45B] gi|319804650|gb|EFW01517.1| translocase subunit secF [Sutterella wadsworthensis 3_1_45B] Length = 310 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 84/302 (27%), Positives = 149/302 (49%), Gaps = 4/302 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM R IS + I ++ +FTHGL I+F GG QL V + Sbjct: 1 MEFFRIHRTIPFMHYRHVLNAISFVSFIVAVYWIFTHGLALSIEFTGGTQLEVKYPSAAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 +R +L + + V ++ + +V V K + P Sbjct: 61 TEQIREDLGQVSKEVLVQTFGTASD---VVIRVPTKEGQTSGQVAAEVMKVLQAKTPDVQ 117 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +++TE VGP++ EL R G + + + ++IY+ RF+W F++ AI + DI +G Sbjct: 118 LKSTEFVGPQVGDELARDGGTALALVVVGIMIYLAFRFEWKFSVAAIIANLHDIVIVVGI 177 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 F++ EF L +AAVL ++GYSVN+ V+++DR+R++ + + S ++++ +I T+ Sbjct: 178 FSVMHWEFTLPVLAAVLAVLGYSVNESVIIFDRVREHFRTMRRADSM-EIVNSAITATIS 236 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R+V T + L M +GG + F++ + GI++ SS+F+AA I L++ R Sbjct: 237 RTVITHTSTLCMTLSMFFFGGPALHYFSLALTIGILLGVYSSVFVAAAIALYLGVKREDL 296 Query: 831 AR 832 + Sbjct: 297 VK 298 >gi|197118809|ref|YP_002139236.1| preprotein translocase subunit SecF [Geobacter bemidjiensis Bem] gi|197088169|gb|ACH39440.1| protein export membrane protein SecF [Geobacter bemidjiensis Bem] Length = 301 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 90/296 (30%), Positives = 146/296 (49%), Gaps = 9/296 (3%) Query: 536 DCIAIQFMRARFWGVGISILFSICSI---CLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 I FM R IS + +I I + N GIDF GGI + V N+PV Sbjct: 5 RNTNIDFMGLRKISFIISGIVAIVGILGVIAIGRGTANMGIDFSGGIAMQVKFNQPVTTQ 64 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 VR L I ++ Q G LV++ + L+ T++ Sbjct: 65 GVRDALSKGGIHEVELQEITGGNQILVKMHKSEKSAQNVEDALKQNLA-----GNAFTVE 119 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 ++ +GP I +L + ++ V +S + +++YI RF + F +GA+ + D+ + F Sbjct: 120 SSTEIGPSIGEKLKKDTLIAVALSMLGIILYIAWRFDFKFGVGAVVATMHDVLAMIAVFY 179 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 + E N+ + AVLT+ GYS+ D VVV+DR+R+NM + ++SINETL R+ Sbjct: 180 VLHKEVNILLITAVLTIAGYSLTDTVVVFDRIRENMHKSLK-DPMFVIFNRSINETLSRT 238 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + TS+ F+S + + ++GG VI FA + G++VA SSIF+A+PI+ Sbjct: 239 IITSVTTFLSAVSLYLFGGEVINDFAFALVIGVLVATYSSIFVASPIVALWEKSSE 294 >gi|254463097|ref|ZP_05076513.1| protein-export membrane protein SecF [Rhodobacterales bacterium HTCC2083] gi|206679686|gb|EDZ44173.1| protein-export membrane protein SecF [Rhodobacteraceae bacterium HTCC2083] Length = 298 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 102/283 (36%), Positives = 164/283 (57%), Gaps = 7/283 (2%) Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQ 609 + GLNYGIDFKGG + + P+D+ R + L++GD Sbjct: 3 LMVVGFASFLYQGLNYGIDFKGGTTIRTESTTPIDVGAYRDAIAPLELGDISISEVFDPT 62 Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669 + +VR++ Q G ++ ++ V+ + I + E VGPK+S ELI+ Sbjct: 63 FEADQNVAMVRIEAQEGQEAVKSDIIAEVQTALQVIAADIKFVSVESVGPKVSGELIQTA 122 Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 + VI++ A+LIYIW+RF+W FALGA+ L+ D+ T+G F+ I+F+L +AA+LT+ Sbjct: 123 AIAVILAIAAVLIYIWLRFEWQFALGAVAALVHDVILTIGIFSELQIKFDLAIIAALLTI 182 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 +GYS+ND VVV+DR+R+N++ Y +D+++ SINETL R+ TS+ ++++ + V Sbjct: 183 VGYSLNDTVVVFDRVRENLRKYKKK-DLKDVLNISINETLSRTFMTSVTTLLALIALFVL 241 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 GG VI F M +G++V SSIF+A+ ILLF+ R + Sbjct: 242 GGDVIRGFVFAMIWGVIVGTYSSIFVASAILLFLGVKRDWTNK 284 >gi|327481771|gb|AEA85081.1| preprotein translocase subunit SecD [Pseudomonas stutzeri DSM 4166] Length = 622 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 150/526 (28%), Positives = 266/526 (50%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD + + L + E++S L+KE + Sbjct: 107 NLAPTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMEKAIETRLNVSEGEVKSLLRKERV 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ +++ + L FAD + D + + + + Sbjct: 167 RYRSLPNLKDAVQLGFADQETLSAAQSLIRKNF--------TDFELTTSERNGQFVLRLT 218 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L++ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 219 LTEAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 278 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F ++ R+ +E + I+G + A A++D Sbjct: 279 GKTANLEFRLAAESD-APRASTETFEFREEGRPPVQLERTLIITGDQVTDAQASYDENG- 336 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA--------------- 311 +P V+I D G TR N+G+ +AV+ + + Q Sbjct: 337 RPQVNIRLDGHGGDLMNRATRSNVGRSMAVIFIEQRPLTRYVRQMVDGVEQEVRVETFQE 396 Query: 312 ------------IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + +I+G + LA +LRAG L + EER +G LG++ Sbjct: 397 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAE 456 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I G A + G + + +FM+++Y +G++A ++ N++ AL+S+L ATLTLP IAG Sbjct: 457 NIKLGVQAAMWGFLFVAIFMVLIYKFFGVLATIALLFNMVALTALMSMLNATLTLPGIAG 516 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE S+ ++ GF RA+S I D N+T L+ +LF Sbjct: 517 IVLTMGMAVDANVLIFSRIREEIANGMSIQRAIHEGFDRAFSAILDGNLTTLLVGGILFA 576 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G ++GFA+T+ + IL SMFTAI + R M+ I + +K + I Sbjct: 577 MGTGPIKGFAVTLSIGILTSMFTAIIVTRGMVNLIYGGRDLKKLWI 622 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 82/204 (40%), Gaps = 4/204 (1%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + + +GP + E I+ G+ + + + I++ + Sbjct: 420 NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIKLGVQAAMWGFLFVAIFMVLI 479 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +K+ F + A L+ ++ ++ L +A ++ +G +V+ V+++ R+R+ Sbjct: 480 YKF-FGVLATIALLFNMVALTALMSMLNATLTLPGIAGIVLTMGMAVDANVLIFSRIREE 538 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + +S + I + + + ++ + + G I FA+ ++ GI+ Sbjct: 539 IA---NGMSIQRAIHEGFDRAFSAILDGNLTTLLVGGILFAMGTGPIKGFAVTLSIGILT 595 Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831 + ++I + ++ IY R Sbjct: 596 SMFTAIIVTRGMVNLIYGGRDLKK 619 >gi|304398341|ref|ZP_07380215.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea sp. aB] gi|304354207|gb|EFM18580.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea sp. aB] Length = 1038 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 78/689 (11%), Positives = 187/689 (27%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L + ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLCGTLSII-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +ITL+F + +V Sbjct: 50 PGASAETLENTVTQVIEQNMTGIDNLMYMSSNSSNTGQAQITLTFTAGTNPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I++ + S + D + Sbjct: 110 QLQSALRKLPQAVQSQGVTVNKTGDSNILMVAFVSTDGSMDKQDISDYVASNIQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + Q + DP++L TT + N G + Sbjct: 170 DGVGQVDAYGSQ-YAMRIWLDPNKLIAYALTTDDVVNAIQSQNTQVAVGQVGGLPSVEKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 ALNATVNAQSML-------------QTPEQFRAITLKNNPDGSVVTLGDVATVALGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRYNGQPASGLGVKLASGANEMNTDKLVRARIEELSHYFPHGLEAKIAYETSPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV V+++ + + L+ ++ + + T ++L G ++ ++ Sbjct: 336 SITDVVKTLLEAIVLVFGVMYLFMQNFRATLIPTIAVPVVLFGTFSVLYAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMHEEGLSPRAATRKSMGQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + R Sbjct: 456 MAFFGGTVGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPAAQGEVHERRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + +A W + + + + L ++ +G V Sbjct: 516 NRHFNRNADRYERGVAGILRTGGRWLLVYVAIIGLMAFLFLRLPTSFLPLEDRGVFLTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L S + ++ ++ + + F G+ R+ +K Sbjct: 576 QLPAGATLEQTASVVAKVENYYLTKEKANVLSVFSTIGAGPGGNGQNVARLFVRLKDWEA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K +++ ++ Sbjct: 636 RPGADRTSFAIIDRATKAFQKIKEGRVIA 664 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 89/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + + +++ ++++ P Sbjct: 260 VTLGDVATVALGAEKYDYLSRYNGQPASGLGVKLASGANEMNTDKLVRARIEELSHYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETSPFVKASITDVVKTLLEAIVLVFGVMYLFMQNFRATLIPTIAVPVVLFGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + ++ +S R KS+ + Sbjct: 380 FSVLYAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMHEEGLSPRAATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +G G++ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTVGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 68/185 (36%), Gaps = 8/185 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS + + + + ++ W + + L + L Sbjct: 854 GFQWTGASYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVVGALIA 913 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+E ++ +LT++G S + +++ + + + + + ++ + L Sbjct: 914 TWLRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---INSKGRELVESTLEASRQRLR 970 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 971 PILMTSLAFIFGVLPMAISSGAGSGSQHAVGTGVMGGMISATLLAIFFVPLFFVLVRRRF 1030 Query: 828 AKNAR 832 + Sbjct: 1031 PLKEK 1035 >gi|120554045|ref|YP_958396.1| preprotein translocase subunit SecF [Marinobacter aquaeolei VT8] gi|120323894|gb|ABM18209.1| protein translocase subunit secF [Marinobacter aquaeolei VT8] Length = 316 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 152/289 (52%), Gaps = 6/289 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM R +SI+ + SI LL GLN G+DF GG + + L +R+ L Sbjct: 9 FDFMGLRKIASVLSIVLVVVSIALLGVRGLNLGMDFTGGTSVELEYAEAPSLDGIRNTLT 68 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + QNF + L+R+ + V + + ++E VG Sbjct: 69 EAGYEQFAVQNFGADTTVLIRMA-----EAGNDELALEVAGVLAADGADLELVSSEFVGS 123 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ EL +G++I+ +LIY+ +RF++ F + ++ L D+ LG FALF F+ Sbjct: 124 QVGEELKEDSGLGLLIALAVVLIYVGMRFQFKFGIASVIPLAHDVIIVLGVFALFQWTFD 183 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AA+L +IGYS+ND +VV DR+R+N + ++ D+I++SI+ET+ R++ TS Sbjct: 184 LTVLAALLAVIGYSLNDTIVVADRIRENFRKMRVGEAW-DIINQSIHETITRTINTSGTT 242 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +L + GG I +FA+ + G+VV SSI+++A +L+ + R Sbjct: 243 LVVLLALYFLGGEAINNFALALIIGVVVGTYSSIYVSANMLMVMGVTRE 291 >gi|312795158|ref|YP_004028080.1| protein translocase subunit secF [Burkholderia rhizoxinica HKI 454] gi|312166933|emb|CBW73936.1| Protein translocase subunit secF [Burkholderia rhizoxinica HKI 454] Length = 316 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 158/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ IS++ + ++ L GL+ ++F GG L + + Sbjct: 1 MEFFRIRKDIPFMQRALIFNVISLVTFLLAVFFLLHRGLHLSVEFTGGTVLEIHTPQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R L+ + D Q F ++ L+RL + G S AQ + V + E+ Sbjct: 61 VDPIRGALDKIGYADAQVQTFGTSRDVLIRLPLKGGLSSAQQS--DQVMAALNELDAQIK 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ +EL G++ + + ++IY+ RF+W +A+ I + D+ LGF Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVVGIVIYLSFRFEWKYAIAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ ++I+ +I T+ Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVTEVINHAITSTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M ++GG + FA+ + GI+ SS+F+AA + +++ R Sbjct: 238 RTIITHGSTQMMVLSMLLFGGLTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|261340776|ref|ZP_05968634.1| inner membrane multidrug efflux protein BpeB [Enterobacter cancerogenus ATCC 35316] gi|288317200|gb|EFC56138.1| inner membrane multidrug efflux protein BpeB [Enterobacter cancerogenus ATCC 35316] Length = 1037 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 75/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G+L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGVLAI-----TSLPVEQYPELAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLSFTAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSALRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L + T ++ N G D+ Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPNKLTSVQMTAKDVTDAIESQNAQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELSHFFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRQATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCCTLLKPLHKGEQHGQKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W V +L L ++ +G V Sbjct: 516 NRMFNRNAARYETGVGKVLHRSVRWMVVYVLLLGGMVFLFLRLPTSFLPLEDRGMFITSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVQKVENYFHTQEKDNVVSIFSTVGSGPGGNGQNVARMFIRLKDWEQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K + + Sbjct: 636 RDSKTGSSFAIIERATKAFSHIKEARVFA 664 Score = 79.3 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ +++ P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELSHFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + +S R KS+ + Sbjct: 380 FAVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRQATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCCTLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 33/268 (12%), Positives = 82/268 (30%), Gaps = 13/268 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 D + A V S ++ + N + Sbjct: 777 YRMLPDDINRWYVRNNAGGMVPFSAFATSRWETGSPRLERYNGYSALEIVGEAAPGVSTG 836 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + ++V++ T + + + + S + + + + + Sbjct: 837 TAMDVMEKLVQQLPAGFGLEWTAMSYQERLSGAQAP----ALYAL--SLLVVFLCLAALY 890 Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + W + + L + L + G+E ++ +LT+IG S + +++ + + Sbjct: 891 ESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE- 949 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFG 804 + + + L + TS+A VLPMA G+ + + G Sbjct: 950 --MNAKGHDLMAATLHACRQRLRPILMTSLAFVFGVLPMATSSGAGSSSQHAVGTGVMGG 1007 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ A +I+ + + R Sbjct: 1008 MISATILAIYFVPLFFVLVRRRFPLKER 1035 >gi|163749708|ref|ZP_02156954.1| protein export protein SecD [Shewanella benthica KT99] gi|161330521|gb|EDQ01479.1| protein export protein SecD [Shewanella benthica KT99] Length = 610 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 166/536 (30%), Positives = 277/536 (51%), Gaps = 37/536 (6%) Query: 18 GLLIALPNFLPQ--SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 + AL + ++ P + + + LGLDLRGG + ++EV D+ V + Sbjct: 84 AIAAALGDKYTVALNLAPATPKWLEAMGGSPMKLGLDLRGGVYFLMEVKMDEAVRKMTES 143 Query: 73 YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 + R+ L+ E I +R+ I + F D+ + D Sbjct: 144 KMADFRTDLRGERIRYAGIRESAKGIEIKFRDAENLAKAERFLKSRDN--------DMVF 195 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + + LS N + Q+ A++Q++ IR R++++G++E +QR G+ RI++Q Sbjct: 196 TDTSSGGNYFLIANLSDNYLKQIKEDALQQNITTIRNRVNELGVAEPVVQRQGAERIIVQ 255 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKV 247 LPG QD +R +++LG TA + F V G + G + + +V Sbjct: 256 LPGVQDTARAKKILGATASIEFRMVDEKADAAAIASGRVSPNSQVYDRRQGGKVALYKEV 315 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306 +SGIH+ GA +FD + +P V I+ D G F VT+DNIGKP+A + Sbjct: 316 MLSGIHIQGAQPSFDEYS-RPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGAK 374 Query: 307 ----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 V G+ + + LA +LRAG+L + IVEER Sbjct: 375 NPDGSIKLEKIEEVISVATIQARLGRNFVITGLDHSESQNLALLLRAGALIAPVVIVEER 434 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG- 409 +G LG+++I G A++ GL ++++FM+V Y +GL+A+ ++ N+++ + ++S++ Sbjct: 435 TIGPSLGAENIQNGVQAMIWGLAVVLIFMLVYYRAFGLIANLALTANLVMVVGVMSMIPG 494 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 A LTLP IAG+VL +G+AVD N+L+ ERIREE R +SV ++ G++ A+STI D+NIT Sbjct: 495 AVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHDGYANAFSTIADANIT 554 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 + ++LF G GAV+GFA+T+ + I SMFTAI RA++ + K++K + I Sbjct: 555 TFMTALILFSVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKRVKKLSI 610 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 89/234 (38%), Gaps = 6/234 (2%) Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 S+++ I + + + + ++ I +G Sbjct: 378 GSIKLEKIEEVISVATIQARLGRNFVITGLDHSESQNLALLLRAGALIAPVVIVEERTIG 437 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIE 717 P + E I+ G+ +I +LI++ + ++ F L A L ++ +G ++ G Sbjct: 438 PSLGAENIQNGVQAMIWGLAVVLIFMLVYYR-AFGLIANLALTANLVMVVGVMSMIPGAV 496 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ +G +V+ V++Y+R+R+ ++ S + I ++ Sbjct: 497 LTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHDGYANAFSTIADANI 553 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830 F++ L + G + FA+ + GI + ++I I+ R K Sbjct: 554 TTFMTALILFSVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKRVKK 607 >gi|312962923|ref|ZP_07777410.1| preprotein translocase SecD subunit [Pseudomonas fluorescens WH6] gi|311282950|gb|EFQ61544.1| preprotein translocase SecD subunit [Pseudomonas fluorescens WH6] Length = 622 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 161/526 (30%), Positives = 268/526 (50%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDL GG H +LEVD D ++ L++Y +++S L+KE + Sbjct: 107 NLAQTTPQWLRSIGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKL 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q+ I L F D +E + + D ++ + Sbjct: 167 RYRSLPQLNGAIQLGFTDEASREQARALIRKNFND-FDIVPADLNGQAVLR-------LA 218 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S I ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 219 MSPAKIAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRIL 278 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F R+ + L+E + I+G + A A F Sbjct: 279 GKTANLEFRLAAEP-GASRATSEEFEFREGNRPPALIERGLIITGDQVTDAKAGFGEHGT 337 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299 P V+I D G TR N+G+ + + Sbjct: 338 -PEVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQRPVTTYTKQMVNGVEKDVPVQTFKE 396 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 397 EKKIISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 456 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+I + +G++A ++ N+++ LAL+SLLGATLTLP IAG Sbjct: 457 NITKGVDAALWGMLFVSLFIIAISRFFGVIATVALAGNMVMLLALMSLLGATLTLPGIAG 516 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE +V +++ GF RA++ I DSN+T L+ +LF Sbjct: 517 IVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFA 576 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 577 MGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 622 Score = 149 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 93/250 (37%), Gaps = 5/250 (2%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ V ++ + + Q++ Q E+ Sbjct: 374 VTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGLNGQGESSELALLLR 433 Query: 643 TEIVPLSTIQNTE-IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + E +GP + + I KG+ + + + ++I ++ F + A L Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAISRF-FGVIATVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 493 GNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMTVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + +++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 550 NEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609 Query: 822 FIYDWRAKNA 831 I+ R Sbjct: 610 LIFGGRDFKK 619 Score = 42.8 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + IG + + PN P + A +++ + D Sbjct: 4 KYPLWKYVLILAVLAIGFIYSAPNLYPDDPAIQISGASTSLQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + ++ L + D V + Sbjct: 51 LERASKALNDA----------GIQVKAATLAAGSKGGLLRLTKQEDQLPAKDVVRKAM 98 >gi|187778357|ref|ZP_02994830.1| hypothetical protein CLOSPO_01949 [Clostridium sporogenes ATCC 15579] gi|187771982|gb|EDU35784.1| hypothetical protein CLOSPO_01949 [Clostridium sporogenes ATCC 15579] Length = 287 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 147/287 (51%), Gaps = 8/287 (2%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS++ + + L GLNYGIDFKGG + + + V ++ Sbjct: 7 KTKIWFSISLIIILTGMFFLMKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 ++ + N + ++ ++ VK K + + + +GP + +E Sbjct: 67 SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L RK ++ +II+ IAMLIY+ IRF++ F L AI L+ DI T+ +A+F + + + +A Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFKFGLAAILGLVHDILITISVYAIFKLPVSSSFIA 180 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT++GYS+ND +V++DR+R+N K ++ + SI +T+ RS+ T + +++ Sbjct: 181 AILTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANISITQTMSRSINTVLTTLFTIV 239 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + V+ I FA P+ GI+ SSIFI++P+ + + N Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKSKLANK 285 >gi|77462343|ref|YP_351847.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides 2.4.1] gi|332560226|ref|ZP_08414548.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides WS8N] gi|6647841|sp|O33568|SECF_RHOS4 RecName: Full=Protein-export membrane protein secF gi|2228684|gb|AAB61904.1| protein-export membrane protein [Rhodobacter sphaeroides] gi|77386761|gb|ABA77946.1| protein translocase subunit secF [Rhodobacter sphaeroides 2.4.1] gi|332277938|gb|EGJ23253.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides WS8N] Length = 324 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 177/312 (56%), Gaps = 7/312 (2%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 R L P+ I F A G S+ S+ T GLN+GIDF+GG + + Sbjct: 1 MAFRLKLCPEKTNIDFFWAAPVTFGFSVFLMAASLVAWLTLGLNFGIDFRGGTTIRTEST 60 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKK 640 + VD++ R+ LE +GDIS +VR+ Q + V++ Sbjct: 61 QAVDVAAYRAALEGQDLGDISITEVFDPGFRADQHVAMVRIGAQDATQSITPEQIGQVEE 120 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + P T + E VGPK+S ELIR I+ V + + +YIW+RF+W FALG++ L Sbjct: 121 ALKTVDPSITFPSVESVGPKVSGELIRSAILAVAAACAGIAVYIWLRFEWQFALGSVAAL 180 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 I D+ T+G FALF I+F+LT VAA+LT++GYS+ND VVV+DR+R+N+ Y ++ RD+ Sbjct: 181 IHDVLVTIGVFALFQIKFDLTTVAALLTVLGYSINDTVVVFDRLRENLVKY-KTMPLRDV 239 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ++ S+NETL R++ T M I+++ + V+GG VI F + FG+V+ SS+++A I+ Sbjct: 240 MNLSVNETLSRTIMTLMTTLIALVSLLVFGGDVIRGFVFAITFGVVIGTYSSVYMAKNIV 299 Query: 821 LFIYDWRAKNAR 832 L++ R + Sbjct: 300 LYLGVDRGGPKK 311 >gi|304413739|ref|ZP_07395183.1| preprotein translocase subunit SecD [Candidatus Regiella insecticola LSR1] gi|304283830|gb|EFL92224.1| preprotein translocase subunit SecD [Candidatus Regiella insecticola LSR1] Length = 617 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 160/542 (29%), Positives = 289/542 (53%), Gaps = 41/542 (7%) Query: 11 YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70 M G + N P + + +A+ + + LGLDLRGG H ++EVD D ++ Sbjct: 90 VLMTALGGKYVIALNLAPATP--AWLAALGADPMKLGLDLRGGVHFLMEVDMDTALSKLQ 147 Query: 71 QMYSDELRSFLKKEGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSKLN 127 + D LR+ L+++ I S + + + FAD + ++ ++ + Sbjct: 148 EHNIDSLRADLRQKNIPYLSAAKQDQTNYAVFIRFADDKLRDTAISYLSSRHR------- 200 Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187 ++ T ++ ++S + + +A++Q++ I+R R++Q+G++E +Q+ G+ Sbjct: 201 ----DLVINTDGNNQLKALISDERLREARGYALQQNITILRNRVNQLGVAEPLVQKQGAD 256 Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYL 242 RI+++LPG QD +R +++LG TA + F N G S+G + Sbjct: 257 RIVVELPGIQDTARAKEILGATASLEFRLQNTNIDPSAAAAGRVPGDSEVKLTSEGRPVV 316 Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302 + +V ++G H+ +T++ D + V+IS D G T+DNIGKP+A + Sbjct: 317 LYKRVILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSIMSNFTKDNIGKPMATLFVEYK 375 Query: 303 LTAP------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344 + Q+ +I+G A L+ +LRAG+L + Sbjct: 376 DSGKKDINGKTIFVKQEEVINVATIQSRLGNNFRITGIANPVEARQLSLLLRAGALIAPI 435 Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404 IVEER +G LG+ +I +G A + GL+ ++FM++ Y K+GL+A ++ +N++L + + Sbjct: 436 QIVEERTIGPTLGAQNITQGLAACLWGLIASIIFMVIYYRKFGLIASSALLVNLVLIVGI 495 Query: 405 LSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463 +SLL ATLT+P IAGIVL + +AVD+N+L+NERI+EE R +S+ ++ G+ A+S+I Sbjct: 496 MSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSIQQAIHQGYQGAFSSI 555 Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 D+N+T LI ++L+ G G+++GFAIT + ++ SMFTAI RA++ + K++ + Sbjct: 556 VDANVTTLITAIILYAIGTGSIKGFAITTVIGVITSMFTAIVGTRAIVNLLYGGKRINKL 615 Query: 524 DI 525 I Sbjct: 616 SI 617 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 81/177 (45%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + I +G+ + IA +I++ I ++ F L A + L++++ +G +L Sbjct: 442 TIGPTLGAQNITQGLAACLWGLIASIIFMVIYYR-KFGLIASSALLVNLVLIVGIMSLLP 500 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ + +V+ V++ +R+++ ++ S + I + V Sbjct: 501 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSIQQAIHQGYQGAFSSIVD 557 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ I+ + + G I FAI G++ + ++I I+ +Y + N Sbjct: 558 ANVTTLITAIILYAIGTGSIKGFAITTVIGVITSMFTAIVGTRAIVNLLYGGKRINK 614 Score = 38.9 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 14/37 (37%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA 38 R W ++ IGLL ALPN + + Sbjct: 4 RYPLWKYLMLIFFILIGLLYALPNLYGEDPAVQITGV 40 >gi|218961313|ref|YP_001741088.1| protein-export membrane protein secD, accessory membrane protein [Candidatus Cloacamonas acidaminovorans] gi|167729970|emb|CAO80882.1| protein-export membrane protein secD, accessory membrane protein [Candidatus Cloacamonas acidaminovorans] Length = 528 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 162/536 (30%), Positives = 263/536 (49%), Gaps = 21/536 (3%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ W + + C+ P ++ PS K+ + LGLDLRGG ++LEV Sbjct: 1 MKKFSWRGLFIIIFFCVTAFFLAP-----MVIPNLPSWWSKHHLKLGLDLRGGMQILLEV 55 Query: 61 DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKV 115 D + + + +R + + G+ S+++ +N+I + + + + Sbjct: 56 DTSELSAADARNAVEQNIKIIRERIDQFGVAEPSIQKLGENRIMVQLPGVSDYKAAENLI 115 Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 + + ++ T ++S+ D + Sbjct: 116 KQTAMLEFKLVAPQDEAKRVIE-TIDRNISSNLDKFPVLAEMAKKDKSIMADTTSTDSLK 174 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235 E L + D ++ LL A F +++P + Sbjct: 175 TGEGIFSSLIRPGEMDFEVQYSDVRLIQDLL---ADTLFAQMVPMGYQLALDKADTENPR 231 Query: 236 SDGNQYLVEDKVEISGIHLNGATANF-------DPKTHKPVVDISFDEMGARRFFEVTRD 288 +D N Y++ +++G L A + +KP + I GAR+F VT D Sbjct: 232 ADRNLYVLSSAAQLTGGDLAKAKVEYGSATSTDPRIANKPYISIEMKREGARKFERVTAD 291 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 N+GK LA+VLDG V +AP I + I G+AQI+G FT A LA +L G+L + V Sbjct: 292 NVGKRLAIVLDGVVYSAPNIQERIAGGRAQITGRFTATEANELAIVLNTGNLIAPIKPVS 351 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 +GA LG+DSI KGT A + GL+++VLFMI+ Y G +AD ++ LNV LA+L+ Sbjct: 352 TSIIGATLGADSIRKGTMAGLIGLIIVVLFMIIYYKLCGFIADIALVLNVGFILAMLTAF 411 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GATLTLP IAGI+L IG+AVD+N+L+ ERIREE ++ +++ GF RA T++DSN+ Sbjct: 412 GATLTLPGIAGIILTIGMAVDANVLIFERIREELDLGKTPRSAVEAGFKRALVTVWDSNL 471 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 T +IA ++L++ G G +RGFA+T+ + I+ SMFTAI +VR+++ I+ K + Sbjct: 472 TTVIAGIILYYLGTGPIRGFAVTLVIGIMGSMFTAIVVVRSILDNIVLTGKRTKLS 527 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 89/203 (43%), Gaps = 6/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + ++ +T I+G + + IRKG + +I I +++++ I + Sbjct: 327 TATEANELAIVLNTGNLIAPIKPVSTSIIGATLGADSIRKGTMAGLIGLIIVVLFMIIYY 386 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 K A L+L++ L FG L +A ++ IG +V+ V++++R+R+ + Sbjct: 387 KLC-GFIADIALVLNVGFILAMLTAFGATLTLPGIAGIILTIGMAVDANVLIFERIREEL 445 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 L + R ++ L +++ I+ + + G I FA+ + GI+ + Sbjct: 446 DL---GKTPRSAVEAGFKRALVTVWDSNLTTVIAGIILYYLGTGPIRGFAVTLVIGIMGS 502 Query: 809 ASSSIFIAAPIL--LFIYDWRAK 829 ++I + IL + + R K Sbjct: 503 MFTAIVVVRSILDNIVLTGKRTK 525 >gi|307293128|ref|ZP_07572974.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Sphingobium chlorophenolicum L-1] gi|306881194|gb|EFN12410.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Sphingobium chlorophenolicum L-1] Length = 1057 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 77/575 (13%), Positives = 154/575 (26%), Gaps = 41/575 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + +FP P + + Sbjct: 8 RPIFAWVIAIVIMLAGVLA-----LRSLAVAQFPEIAPPA-------------VTVTTSY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + LK S ITL+F + +V Sbjct: 50 PGANAQTLESTTTQIIEQQLKGIDRLRYFSSSSDSAGNLTITLTFEQGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ L T +++ + I ++ + D I Sbjct: 110 KLAQATPLLPQEVQQQGLRVTKSSSTFLMVMAVYSEDGIHDQLDAGDFVASTLQDPISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP ++ L TT + N G Sbjct: 170 DGVGDTQLFGSQ-YAMRIWLDPYKMANLGITTGDVKSAIRAQNAQVSAGQIGAAPSPKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + D + + Sbjct: 229 ALNATVTAQSRL-------------KTPEEFRQIRLRDNGDGSVVYLSDVARVEMGADTY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T+E A L N Sbjct: 276 SFAARFNGHPAAGFAIKLAPGANALDTVEGVKSRVAELSKSFPSWVKYDFPVDNSTFVKL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + L+ ++ + ++ +LA+L G T+ ++ Sbjct: 336 SVEQVISTLFEAILLVFVVMFIFLQNWRATLIPTIAVPVVLLGSLAVLYAAGFTINTLTL 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERIIQEEGLSPREAAKKSMDEISGALIGIGLVLSAVFLP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + A+ I++ + I F Sbjct: 456 MAFFGGSTGVIFRQFSITIVSAMVLSVLVALILTPALCATILQPRGQSHIWTGFFGSRFG 515 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 + G S+ Sbjct: 516 RFFDWFNRTFDRSVVRYGKSVEKVERRWGRTMLVY 550 Score = 81.3 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 86/235 (36%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V LS V + + +++ ++ ++++ P Sbjct: 260 VYLSDVARVEMGADTYSFAARFNGHPAAGFAIKLAPGANALDTVEGVKSRVAELSKSFPS 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + + + I + + + + + ++I + W L + + + + Sbjct: 320 WVKYDFPVDNSTFVKLSVEQVISTLFEAILLVFVVMFIFLQNWRATLIPTIAVPVVLLGS 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 L G N + ++ IG V+D +VV + + + +S R+ KS++E Sbjct: 380 LAVLYAAGFTINTLTLFGMVLAIGLLVDDAIVVVENV--ERIIQEEGLSPREAAKKSMDE 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G + + LPMA +GGS F+I + +V++ ++ + + Sbjct: 438 ISGALIGIGLVLSAVFLPMAFFGGSTGVIFRQFSITIVSAMVLSVLVALILTPAL 492 Score = 52.4 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 61/204 (29%), Gaps = 6/204 (2%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + V + G + F+G + + PG S + Sbjct: 795 VRGSGGVMAPISSFATTEWIHGPAKLERFNGVPSMQIMGAPAPGVSTGEAMKAMEEMAAK 854 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + ++I + + + W + + + L Sbjct: 855 LPAGVGYEWNGISYEEKTSGGQAAPLYALSMLIVFLCLA---ALYESWSVPIAVMLVVPL 911 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + L G+ ++ ++T IG S + +++ + + M+ + Sbjct: 912 GVFGAVLAAMLVGLNNDIYLQVGLITTIGVSAKNAILIVEFAEEKMRE---GLPPAQAAL 968 Query: 763 KSINETLGRSVYTSMAAFISVLPM 786 ++ L + TS A VLP+ Sbjct: 969 EAGKLRLRPILMTSFAFIFGVLPL 992 >gi|300717903|ref|YP_003742706.1| Acriflavine resistance protein B [Erwinia billingiae Eb661] gi|299063739|emb|CAX60859.1| Acriflavine resistance protein B [Erwinia billingiae Eb661] Length = 1038 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 79/689 (11%), Positives = 190/689 (27%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++C G L L + ++++P P ++ + + Sbjct: 8 RPIFAWVIAILLCLTGTLAIL-----KLPIEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITL+F + +V Sbjct: 50 PGASAETLENTVTQVIEQNMTGIDNMMYMSSQSSNTGQATITLTFTAGTNPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D + + T + +I++ + S + D + Sbjct: 110 QLQAALRKLPQDVQTQGVTVTKTGDTNILMVAFVSTDGSMDKQDISDYVASNVQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP+++ TT+ + N+ G D Sbjct: 170 DGVGEVDAYGSQ-YAMRIWLDPNKMINYALTTSDIVSAIESQNSQVAVGQLGGLPSVDRQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + ++ Sbjct: 229 ALNATINSQSLL-------------NTPQQFRDITLRVNQDGSEVKLGDVADVALGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DFLSQYNGQAASGLGIKLASGANELQTDELVRARIEELSHFFPHGLKAEVAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +LS G ++ ++ Sbjct: 336 SIEDVVKTLIEAVILVFVVMYLFMQNFRATLIPTIAVPVVLLGTFTILSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRDATRKSMGQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ ++++S+ A+ + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCATLLKPIAKGHHHGRRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + +A W V +L + + L ++ +G V Sbjct: 516 NRMFNRNAERYERGVGKILAKAGRWMVLYVLLIAGMAFMFLRLPTSFLPLEDRGVFTTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L + ++ ++ + + F G+ R+ +K Sbjct: 576 QLPPGSTLQETNKVVNKVEQYYLTEEKNNVLSVFSTIGAGPGGNGQNVARMFVRLKDWGD 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 +T ++ ++ Sbjct: 636 RPGAENTSFAIIERATAAFKKFKEGRVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D Q + L + + ++ ++++ P Sbjct: 260 VKLGDVADVALGAEKYDFLSQYNGQAASGLGIKLASGANELQTDELVRARIEELSHFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + +I + I + + +++ + + L + + + T Sbjct: 320 GLKAEVAYETTPFVKASIEDVVKTLIEAVILVFVVMYLFMQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + +S RD KS+ + Sbjct: 380 FTILSAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRDATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +GG+ F++ + +V++ ++ + + + Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 70.9 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 69/189 (36%), Gaps = 11/189 (5%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 + G + + IS + + + + ++ W + + L + L Sbjct: 853 FGLQWTGASYQERMSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGALV 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 G+E ++ +LT+IG S + +++ + + + + + ++ + L Sbjct: 913 ATWARGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---INSKGRDLLESTLEASKQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPM + G S + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMVISNGAGSSSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029 Query: 827 ---RAKNAR 832 + K + Sbjct: 1030 FPVQEKPGK 1038 >gi|317049078|ref|YP_004116726.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Pantoea sp. At-9b] gi|316950695|gb|ADU70170.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea sp. At-9b] Length = 1038 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 190/689 (27%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L + ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLCGTLAII-----SLPIEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +ITL+F + +V Sbjct: 50 PGASAETLENTVTQVIEQNMTGIDNLMYMSSNSSNTGQAQITLTFTAGTDPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L + + + +I++ + S + D + Sbjct: 110 QLQTALRQLPSAVQSQGVTVNKTGDSNILMIAFVSTDGSMDKQDISDYVASNIEDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L TT + N G + Sbjct: 170 DGVGEVDAYGSQYSM-RIWLDPNKLNAYALTTDDVVSAIESQNAQVAVGQLGGLPSVEKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + ++ Sbjct: 229 ALNATVNAQSML-------------QTPEQFKAITLKTNSDGSVVTVGDVADVAMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + A L V Sbjct: 276 DYLSRYNGQAASGLGIKLASGANEMNTDKLVRARIAELSQYFPHGLEAKVAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFMQNFRATLIPTIAVPVVLLGTFAVLYACGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 VL IGL VD I+V E + + + S + + + + V Sbjct: 396 FATVLAIGLLVDDAIVVVENVERLMSEEGLSPRAATRKSMGQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + R Sbjct: 456 MAFFGGTVGAIYRQFSITIVSAMILSVLVALILTPALCATLLKPLEKGQHHGRRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + +A +++ W + + + + + + +G V Sbjct: 516 NRHFNANAARYERGVARILVKSGRWMLLYLAIIGVMAFMFIHLPTSFLPQEDRGVFLTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L + + ++ ++ + + F G+ R+ +K Sbjct: 576 QLPAGATLQQTSNVVAKVEEYYMTAEKDNVLSVFSTIGAGPGGNGQNVARMFIRLKDWED 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RPGSDRTSFAIIDRATKAFNKIREARVIA 664 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + D + + L + + +++ ++++ P Sbjct: 260 VTVGDVADVAMGAEKYDYLSRYNGQAASGLGIKLASGANEMNTDKLVRARIAELSQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKVAYETTPFVKASITDVVKTLLEAILLVFLVMYLFMQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A + IG V+D +VV + + + +S R KS+ + Sbjct: 380 FAVLYACGYSINTLTMFATVLAIGLLVDDAIVVVENV--ERLMSEEGLSPRAATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +G G++ F+I + ++++ ++ + + + Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTVGAIYRQFSITIVSAMILSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 71/202 (35%), Gaps = 8/202 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 + + L + G L + IS + + + + ++ W Sbjct: 837 TAMDAMEKLVSQLPMGIGFQWTGASYQERLSGSQAPALYAISLLVVFLSLAALYESWSIP 896 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L L G+E ++ +LT+IG S + +++ + + + + Sbjct: 897 FSVMLVVPLGVVGALLATWLRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---INSK 953 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ + L + TS+A VLPMA+ G + + G++ A Sbjct: 954 GRELIESTLEASRQRLRPILMTSLAFIFGVLPMAISAGAGSGSQHAVGTGVMGGMISATV 1013 Query: 811 SSIFIAAPILLFIYDWRAKNAR 832 +IF + + + Sbjct: 1014 LAIFFVPLFFVLVRRRFPLKEK 1035 >gi|301166848|emb|CBW26425.1| protein-export membrane protein [Bacteriovorax marinus SJ] Length = 307 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 90/304 (29%), Positives = 154/304 (50%), Gaps = 3/304 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F +I + I F+ IS+L S+ + T +NYG+DF+GG ++ + + Sbjct: 1 MFEIISNNTKINFVNKFSITTVISLLLVSVSLFGIIT-KMNYGVDFRGGAEIQLKFKESI 59 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R L I+ Q ++ Q ++ ++ + + Sbjct: 60 NLDGLRKELADAGFKGIAAQTIGERSQNEFLVKVQGDETNLNQITEKVSETLLASYASKG 119 Query: 650 TIQNT-EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +IVGPK +L G ++ + IA++IYI +RF + ++ GAI L D+T L Sbjct: 120 VEVRKVDIVGPKAGAQLRISGFQAMLWALIAIMIYIGLRFDFKYSPGAIVALFHDVTIIL 179 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G FA F +EF L VAA+L +IGYSVND V+VYDR+R+ + +++ I+ ++NET Sbjct: 180 GVFAFFNVEFTLQTVAALLAVIGYSVNDTVIVYDRVRE-HEEKNSALDLASHINNAVNET 238 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L R++ TS+ + M +GG I F + ++ G+++ SSIF+AAP+ LF + Sbjct: 239 LSRTIMTSLTTLFVSVVMYFFGGLAIRDFFLAISLGVLIGTYSSIFVAAPVTLFFDRVKG 298 Query: 829 KNAR 832 + Sbjct: 299 SQEK 302 >gi|257468003|ref|ZP_05632099.1| protein translocase subunit secF [Fusobacterium ulcerans ATCC 49185] gi|317062289|ref|ZP_07926774.1| translocase subunit SecF [Fusobacterium ulcerans ATCC 49185] gi|313687965|gb|EFS24800.1| translocase subunit SecF [Fusobacterium ulcerans ATCC 49185] Length = 314 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 144/284 (50%), Gaps = 2/284 (0%) Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608 VG+S++ + S+ FT GLNYGIDF GG + P+ L+ + +NL+ + Sbjct: 12 FVGLSLVIVVLSLGAFFTKGLNYGIDFSGGNLFQLRFENPITLNDINNNLDEISKEINQV 71 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + V + +I + E VG + EL Sbjct: 72 NPNSRKVQISEDNTVIIRTPELTETEKTEVLDSLKKIGNF-DVNKEEKVGASVGEELKTS 130 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 I + I A +++YI RF++ FA+ A+ L D+ +G +L G E + +AA+LT Sbjct: 131 AIYALGIGAFLIILYITFRFEFTFAVAAVAALFHDLIIAVGVISLLGYEVDTPFIAAILT 190 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 ++GYS+ND +VV+DR+R+NMK ISF +DKS+N+ + RS+ TS+ +++ + V Sbjct: 191 ILGYSINDTIVVFDRIRENMKRKNK-ISFEACLDKSVNQVMIRSINTSVTTLFAIIAILV 249 Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +GG + +F + + GI+ SS+FIA P++ F+ + + Sbjct: 250 FGGDSLKTFIVTLLIGILAGTYSSVFIATPLVYFLDKNKKGPNK 293 >gi|126736001|ref|ZP_01751745.1| protein-export membrane protein SecD, putative [Roseobacter sp. CCS2] gi|126714558|gb|EBA11425.1| protein-export membrane protein SecD, putative [Roseobacter sp. CCS2] Length = 553 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 193/546 (35%), Positives = 307/546 (56%), Gaps = 31/546 (5%) Query: 7 LVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNRI 44 +++ + +GL A+PN ++ ++PS +P N + Sbjct: 8 KLVMIWLTVIVGLTFAMPNGFYGRVETHNDAMAEIETGVTNAELEADAAQWPSFLPSNLV 67 Query: 45 SLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLS 101 +LGLDLRGG+HL++EV +D F+ + +R L+ E + Q+ + ++ + Sbjct: 68 NLGLDLRGGAHLLVEVQVEDVHVSFIDGFWPTVRDALRLETQTIGFFEQLDSPPTELRIR 127 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 ++ + V V + N+ V ++I LS+ I + I Sbjct: 128 ISEPAGAARAFEIVRGLATPV-ASFTGAASTNIDVRLNGAVLTITLSEAEIAAMNERTIM 186 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221 Q++EIIR+RID++G E TIQR GS RIL+Q+PG + + +LLGTTA+++F+ V+ Sbjct: 187 QTLEIIRRRIDEVGTREPTIQRQGSERILVQVPGVGSANEIIELLGTTAQLTFNPVISPT 246 Query: 222 SKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 S G D+ G Y+V+ + ++G L A +FD +P V F+ Sbjct: 247 SDPDARPGTGNIILPSLDTPGQYYIVQRRPVVTGEDLENAQLDFDQNG-RPAVAFRFNTS 305 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337 AR F + T +NIG+P A+VLD V++AP I IP G I+GNFT+E A LA +LRA Sbjct: 306 AAREFGDYTLENIGRPFAIVLDSEVISAPTIQSHIPGGSGIITGNFTVEEATNLAVLLRA 365 Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397 G+LP +L +EER VG +LG+DSI G A + + I+++MI+ YG +G+ A+ ++ +N Sbjct: 366 GALPAELEFLEERTVGPELGADSIAAGQIACIVAGIAILVYMILSYGLFGVFANIALVIN 425 Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457 V L LLS++GATLTLP IAGIVL IG+AVD+N++V ERIREE + + ++++G+ Sbjct: 426 VALIFGLLSIVGATLTLPGIAGIVLTIGMAVDANVIVFERIREELKTAKGPARAIELGYE 485 Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 +A S+I D+NIT I V+L G G V+GFA T+ I+ S+FTAI + R++++ Sbjct: 486 KALSSIIDANITTFITAVILLVMGSGPVQGFAWTLMFGIMTSVFTAIFVTRSLIVIWFSR 545 Query: 518 KKMKSI 523 + K+I Sbjct: 546 TRPKTI 551 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 87/173 (50%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ + I G + I++ IA+L+Y+ + + F + A L++++ G ++ G Sbjct: 381 GPELGADSIAAGQIACIVAGIAILVYMILSYGL-FGVFANIALVINVALIFGLLSIVGAT 439 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A ++ IG +V+ V+V++R+R+ +K T+ I+ + L + ++ Sbjct: 440 LTLPGIAGIVLTIGMAVDANVIVFERIREELK---TAKGPARAIELGYEKALSSIIDANI 496 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 FI+ + + V G + FA + FGI+ + ++IF+ +++ + Sbjct: 497 TTFITAVILLVMGSGPVQGFAWTLMFGIMTSVFTAIFVTRSLIVIWFSRTRPK 549 >gi|221638201|ref|YP_002524463.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides KD131] gi|221158982|gb|ACL99961.1| Protein-export membrane protein secF [Rhodobacter sphaeroides KD131] Length = 324 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 176/312 (56%), Gaps = 7/312 (2%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 R L P+ I F A G S+ S+ T GLN+GIDF+GG + + Sbjct: 1 MAFRLKLCPEKTNIDFFWAAPVTFGFSVFLMAASLVAWLTLGLNFGIDFRGGTTIRTEST 60 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKK 640 + VD++ R+ LE +GDIS +VR+ Q + V++ Sbjct: 61 QTVDVAAYRAALEGQDLGDISITEVFDPGFRADQHVAMVRIGAQDATQSITPEQIGQVEE 120 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + P T + E VGPK+S ELI I+ V + + +YIW+RF+W FALG++ L Sbjct: 121 ALKTVDPSITFPSVESVGPKVSGELIWSAIMAVAAACAGIAVYIWLRFEWQFALGSVAAL 180 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 I D+ T+G FALF I+F+LT VAA+LT++GYS+ND VVV+DR+R+N+ Y ++ RD+ Sbjct: 181 IHDVLVTIGVFALFQIKFDLTTVAALLTVLGYSINDTVVVFDRLRENLVKY-KTMPLRDV 239 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ++ S+NETL R++ T M I+++ + V+GG VI F + FG+V+ SSI++A I+ Sbjct: 240 MNLSVNETLSRTIMTLMTTLIALVSLLVFGGDVIRGFVFAITFGVVIGTYSSIYMAKNIV 299 Query: 821 LFIYDWRAKNAR 832 L++ R + Sbjct: 300 LYLGVDRGGPKK 311 >gi|4996614|dbj|BAA78559.1| protein-export membrane protein [Prevotella ruminicola] Length = 383 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 163/364 (44%), Gaps = 38/364 (10%) Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561 TA+ + R + ++ K ++ L FM + I I+F+I Sbjct: 12 TAVYLTRVVYDAMLSKDKWTNLTFVTGYSKNL-MQNAKFNFMSSYKKSYTIWIVFAIICC 70 Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK------ 615 + GL+ IDF GG V ++ + VR + I I + Sbjct: 71 ISFYVRGLSRSIDFTGGRNYVVTLDKQTPVEDVRKAMVGAFINTIGEKANQEANTSVIAL 130 Query: 616 -----------NFLVRLQYQPGDSVAQTRVLEMVKKK------------ITEIVPLSTIQ 652 N+ + D A+T + +KK ++ +I Sbjct: 131 GTDGKTVRISTNWDIESNNPEVDDKAETILFNSLKKAGLVSQESADKFKNPDVREGGSII 190 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 ++ VGP +++++ R + V I+ A+ YI +RF+ W F++GA+ L LD +G + Sbjct: 191 SSAKVGPSVAKDITRGAYISVAIALFAIFFYILLRFRNWAFSVGAVVALALDALLVIGIY 250 Query: 712 AL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 +L +E + + A+LT++GYS+NDKVVV+DR+R+N+ LY + L + S+ Sbjct: 251 SLCWGIVPMSLEIDQVFIGAILTVVGYSINDKVVVFDRIRENLGLYGKR-DRQQLFNDSL 309 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 N+TL R++ TS+ I +L + + GG I SF++ M G+V SS+FIAAP Sbjct: 310 NQTLARTINTSVTTLIVLLAIFILGGDSIRSFSLAMILGVVFGTLSSLFIAAPTAFLWMG 369 Query: 826 WRAK 829 K Sbjct: 370 RTIK 373 >gi|194335196|ref|YP_002016990.1| protein-export membrane protein SecF [Pelodictyon phaeoclathratiforme BU-1] gi|194307673|gb|ACF42373.1| protein-export membrane protein SecF [Pelodictyon phaeoclathratiforme BU-1] Length = 311 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 148/309 (47%), Gaps = 11/309 (3%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 I + F+R R G S++ + + L GLNYGIDF+GG ++ + + D+ Sbjct: 1 MRIFHNTSFNFIRYRKIAYGFSLVLLVSGLVSLAVKGLNYGIDFRGGSEVVIRFEKDADV 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 +RS L++ + Q + + + L I Sbjct: 61 GQIRSILDAAGVSGTLKQY---GMDRSFLFSTVFQGDTGELKSLVSNALNDRIKDNRHEI 117 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + VGP I+ +L + ++ + IA+LIY+ IRF+ FA + ++ D+ LG F Sbjct: 118 VRIDAVGPSIASDLKWSAVKALVAALIAILIYVGIRFETKFAATGVLAILHDVLTVLGIF 177 Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 ++ G +E + + +AA LT+ GYS+ D VVVYDR+R+ ++ + + ++S Sbjct: 178 SILGGLFAFMPLEMDQSIIAAFLTIAGYSITDTVVVYDRIRERIR-GQKPSEYERIFNES 236 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +N+TL R++ TS ISV + ++ G I FA + GI++ SSIF+AAP++ Sbjct: 237 MNQTLNRTIITSGTTLISVFVLFIFAGPAIRGFAFAVFIGILIGTYSSIFVAAPLVYDWL 296 Query: 825 DWRAKNARI 833 + R+ Sbjct: 297 RITKSSVRL 305 >gi|197335292|ref|YP_002156795.1| protein-export membrane protein SecD [Vibrio fischeri MJ11] gi|197316782|gb|ACH66229.1| protein-export membrane protein SecD [Vibrio fischeri MJ11] Length = 607 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 150/524 (28%), Positives = 274/524 (52%), Gaps = 37/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H ++EVD D ++ + + R+ L++ I Sbjct: 93 NLAPLTPDWLTSIGAAPMKLGLDLRGGVHFLMEVDMDAAMSKLIGQQEESFRTDLREAKI 152 Query: 87 GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++R + + + ++ + D + + ++ Sbjct: 153 RYRAIRDSGKDSVEVVLRSEEQLAEAKKVLSDAHR--------DMTFVESESNGQFKLIA 204 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + ++ ++A+EQ++ IIR R++++G++E +QR G+ RI+++LPG QD +R +++ Sbjct: 205 TFTEQRLQEIRNYAVEQNITIIRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264 Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F +V G D +G +++ ++ + G + ++ Sbjct: 265 LGATATLEFREVDDKADLAAAASGRAPAGSEIKEDRNGRPVVLKKRIILGGASITD-ASS 323 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + +P V+IS D G + +R NIGK +A V Sbjct: 324 SADEYGRPQVNISLDSEGGSKMTAFSRKNIGKLMATVFTEYKDSGRRTPEGRVILSKTEE 383 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q+ +I+G + A LA +LRAG+L ++IVEER +G +G +I Sbjct: 384 VINQATIQSALGRSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 G A + G+V +++F +V Y +GLVA+ ++ N++L + ++S++ AT+TLP IAGIV Sbjct: 444 MGIQACIWGMVAVMIFTLVYYRGFGLVANLALMANLVLIIGVMSMIPGATMTLPGIAGIV 503 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R ++ ++ G++ A+STI D+NIT LI ++LF G Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GA++GFA+T+ + IL SMFTAI R ++ + K++ + I Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIVGTRCVINLVYGGKRVDKLSI 607 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 89/210 (42%), Gaps = 5/210 (2%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 R G + + ++ +I +GP + ++ I GI I +A Sbjct: 396 RSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455 Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738 ++I+ + ++ F L A L+ ++ +G ++ G L +A ++ +G +V+ V Sbjct: 456 VMIFTLVYYR-GFGLVANLALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798 ++++R+R+ ++ + + I + ++ I+ + + G I FA Sbjct: 515 LIFERIREELRD---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571 Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ GI+ + ++I ++ +Y + Sbjct: 572 VTLSIGILTSMFTAIVGTRCVINLVYGGKR 601 >gi|167462403|ref|ZP_02327492.1| preprotein translocase subunit SecF [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382944|ref|ZP_08056776.1| preprotein translocase subunit SecF-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153064|gb|EFX45522.1| preprotein translocase subunit SecF-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 326 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 4/301 (1%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 D I F+ R IS + + + +LF +N+G+DFK G + + + Sbjct: 16 HHAIHDADNIKFDFVNHRKIFFWISTIIIVIGVIVLFWKQMNFGVDFKAGTSMDINVGQS 75 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + + + G + D ++ ++ E Sbjct: 76 ITQEQAKDVFAKSAVDPQPAAVSVGGEGNQRISAR--FDKDLPDADIKKIQAAFKEAYGD 133 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 Q V P+I++E+ K I+ V+I+++ + IY+ IRF+W FAL AI ++ D + Sbjct: 134 KVSQEVNTVSPEIAQEMGIKAIIAVLIASVFISIYVSIRFEWRFALAAIIAILHDAMIVI 193 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSIN 766 FA+F E +L VAAV+T +GYS+NDK+V++DR+R+NM+ T L++ SI Sbjct: 194 CMFAIFRFEVDLPFVAAVMTTVGYSINDKIVIFDRIRENMRFSKLKTEQDVVYLVNHSIW 253 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 T+ RS+ T + + L + ++G I FA+ G+ A SSI IA+P+ Sbjct: 254 STMARSINTVVTVLFAALCLFIFGSESIKLFALAKLIGLASGAYSSICIASPLWFMFKRK 313 Query: 827 R 827 Sbjct: 314 S 314 >gi|251772532|gb|EES53098.1| SecD export membrane protein [Leptospirillum ferrodiazotrophum] Length = 523 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 175/520 (33%), Positives = 277/520 (53%), Gaps = 32/520 (6%) Query: 20 LIALPNFLP-QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78 + LP+ S+ +P ISLGLDLRGG + L+V E+ ++G L Sbjct: 22 VFLLPSLPVWNSLPPGVKKVLPDGAISLGLDLRGGMSVTLQVMEEKAISGTLTEIVA--- 78 Query: 79 SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT 138 IT SF K+ + D + + Sbjct: 79 ----GLSEKGVHAEVQGTSITASFDTPAKKKEVLDYIASRAPFMKK-----------TQE 123 Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198 T +++ LS+ ++ HA+ Q++E+IR RIDQ G+SE I++ G RILIQLPG D Sbjct: 124 TSGTLTLSLSEAEAARIRKHAMTQAIEVIRNRIDQFGVSEPVIEQQGRDRILIQLPGVTD 183 Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY-------------LVED 245 P R L+G TA++ F + ++ G L D Y + Sbjct: 184 PERAMALIGRTARLEFKLADDSTDPALYISGKTPLPPGDEILYGNASARSGGSRIPYLLK 243 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305 V + G + ++P V ++F+ GA+ F +T+D++ + LA+VLD V +A Sbjct: 244 SVPLMGGDTISDARVAFGQFNEPYVSLTFNSTGAKLFDRITKDHVKERLAIVLDKTVYSA 303 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 PVI + I G+AQI+G+F+++ A LA +LR+G+LP + I++ VG LG DSI G Sbjct: 304 PVIQEEISGGQAQITGSFSLKEAKDLAIVLRSGALPAPVRILQNVTVGPSLGKDSIRAGL 363 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 A + L+L++ FM V Y G+VADF++ LN++ L ++ L ATLTLP IAG++L +G Sbjct: 364 HATLIALLLVLAFMAVYYRLSGVVADFALMLNMLFLLGAMAALHATLTLPGIAGVILTVG 423 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 + VDSN+L+ ERIREE R + V S+D G+ +A+ TI DS++T LI ++LF FG G + Sbjct: 424 MGVDSNVLIFERIREELRAGKPVRSSIDSGYDKAFLTIVDSHVTTLITAIILFIFGTGPI 483 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +GFA+T+ + I I++FT+++ R + + R K++ + I Sbjct: 484 KGFAVTLTVGIAINLFTSLAGTRIVFDLLARRSKLERLSI 523 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 85/181 (46%), Gaps = 5/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 VGP + ++ IR G+ +I+ + +L ++ + ++ + A L+L++ LG A Sbjct: 346 QNVTVGPSLGKDSIRAGLHATLIALLLVLAFMAVYYRLS-GVVADFALMLNMLFLLGAMA 404 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L +A V+ +G V+ V++++R+R+ ++ R ID ++ Sbjct: 405 ALHATLTLPGIAGVILTVGMGVDSNVLIFERIREELRA---GKPVRSSIDSGYDKAFLTI 461 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 V + + I+ + + ++G I FA+ + GI + +S+ I+ + R+K R Sbjct: 462 VDSHVTTLITAIILFIFGTGPIKGFAVTLTVGIAINLFTSLA-GTRIVFDLLARRSKLER 520 Query: 833 I 833 + Sbjct: 521 L 521 >gi|323697901|ref|ZP_08109813.1| protein-export membrane protein SecF [Desulfovibrio sp. ND132] gi|323457833|gb|EGB13698.1| protein-export membrane protein SecF [Desulfovibrio desulfuricans ND132] Length = 353 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 162/347 (46%), Gaps = 47/347 (13%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVD 590 +I + F+ R +S + + + L G YGIDF GG+ + V ++ VD Sbjct: 4 QIIKPDTNLDFIGIRKIAFILSAVLILAGLGSLLIKGGPKYGIDFAGGMIVQVKVDKAVD 63 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + ++ +++L++ + Q+ E + ++ + ++ ++ + Sbjct: 64 VGAIKDAVDTLKLPGLVVQSLGLEGDHEYLIRTSSSNISSEEVRGKINTALTDNLGASFE 123 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--------------------- 689 IQ E+VGPK+ +L + + + + + + +YI RF+ Sbjct: 124 IQRLEMVGPKVGADLRSQALEALFYAVLLIAVYISGRFEQRWTAAAVMAAALAGGVYGIG 183 Query: 690 -------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 +ALGA+ LI D+ T+G F++ EF+LT +A Sbjct: 184 LLGLDMGWLILVALIITVGLCWYLKLNYALGAVVALIHDVIITVGLFSIMNKEFDLTIIA 243 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT++GYS+ND ++V+DR+R+N +SF +I+ S+N+TL R++ TS + VL Sbjct: 244 ALLTIVGYSLNDTIIVFDRIRENTHAKQGKMSFGRIINLSVNQTLSRTIMTSATTLLVVL 303 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + V GGSVI FA+ + GI V SSIF+A+PIL A Sbjct: 304 CLYVMGGSVIHDFALALLIGITVGTYSSIFVASPILYGFGPSEQPEA 350 >gi|114705192|ref|ZP_01438100.1| Acriflavin resistance protein:Hydrophobe/amphiphile efflux-1 HAE1 [Fulvimarina pelagi HTCC2506] gi|114539977|gb|EAU43097.1| Acriflavin resistance protein:Hydrophobe/amphiphile efflux-1 HAE1 [Fulvimarina pelagi HTCC2506] Length = 1055 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 83/685 (12%), Positives = 179/685 (26%), Gaps = 46/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I GL L ++++P +P + + Sbjct: 9 RPIFAAVISILIVLGGLAS-----LTSLPIEQYPQLVPP-------------QVQVRATY 50 Query: 63 DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + + + + + IT++FA + V Sbjct: 51 PGASAETIAQTVSAPIEQQINGVEDMLYMQSTNSSTGTATITVTFAAGTDPDQATINVNN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q ++ L ++ + + + + + + + A S + +D++ Sbjct: 111 RVQQASASLPEQVQRLGVTVSKQNSSILAVLTMSSNDPRYDATYVSNYTLLNVLDELKRL 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q + P L Q T ++ N FG Sbjct: 171 PGIGQAQLFGARDYSMRIWLRPDALAQYGLTPGDVASAIRDQNAQFAAGQFGGEPNGSDL 230 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y V + P I + + Sbjct: 231 AFTYSVTTAGRL-------------PDAKAFENIILRSDENGSSLLLKDVARVELGAQDY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T+ L + Sbjct: 278 GFNATYNGTPTVPIGIYLQPGANALDTLAVTRERMDELSQSFPDGIDYAIPYDTTKFIEA 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ +++I T +L G ++ L ++ Sbjct: 338 SIEEVILTFIEAMILVFLVVYLFLQSFRATLIPMLAVPVSIIGTFGVLLAFGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + S + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEGLSPKEATAKAMSEVAGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G R FAIT+ +S+ IS A+S+ A+ +++ K K Sbjct: 458 VAFLGGLAGTMYRQFAITIAVSVSISGIVALSLTPALCSVLLKNKHSKPFLPFRWFNAAF 517 Query: 534 IPDCI------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 A RA + L G + +G + + Sbjct: 518 DRLTRGYGAGVAFVMRRAAMALLLFCGLIGGSYYFFQTLPGSLVPEEDQGVNFVIAILPP 577 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 LS ++ + D F + +K P Sbjct: 578 AASLSRTTEVMDQVYQNLSQHPAVDDVTAFAGFDLLSGSQKSSAGVAFVSLKDWEERTDP 637 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 +N ++ + I+ Sbjct: 638 SLDARNLVGPFIGMNSGIQDGMILA 662 Score = 81.3 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 90/243 (37%), Gaps = 7/243 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V Q + + +++ V ++++ P Sbjct: 266 DVARVELGAQDYGFNATYNGTPTVPIGIYLQPGANALDTLAVTRERMDELSQSFPDGIDY 325 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711 K I + I+ I + I + + +++ + L + + + I T G Sbjct: 326 AIPYDTTKFIEASIEEVILTFIEAMILVFLVVYLFLQSFRATLIPMLAVPVSIIGTFGVL 385 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 FG NL + ++ IG V+D +VV + + + T +S ++ K+++E G Sbjct: 386 LAFGFSINLLTLFGLVLAIGIVVDDAIVVLENV--ERIMTTEGLSPKEATAKAMSEVAGP 443 Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWR 827 + + +P+A G G++ FAI +A + ++ ++ + + + + + Sbjct: 444 VIAIVLVLCAVFIPVAFLGGLAGTMYRQFAITIAVSVSISGIVALSLTPALCSVLLKNKH 503 Query: 828 AKN 830 +K Sbjct: 504 SKP 506 Score = 74.3 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 65/169 (38%), Gaps = 7/169 (4%) Query: 668 KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 G+ + + + + + ++ +W + + + + L L GI+ ++ + Sbjct: 869 TGLFAIGFGILMVFLILAAQYERWSLPIAVLLAVPFAMFGALLAIFLRGIDNDVYFQIGL 928 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 +TL+G + + +++ + + +S D + V TS+A + V+P+ Sbjct: 929 VTLVGLAAKNAILIVEFA---VLKREEGLSAFDAALEGAKLRFRPIVMTSLAFILGVVPL 985 Query: 787 AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 A+ G + S + G++ A +IF + A+ Sbjct: 986 AISTGAGSASRHSIGTGVIGGMLFATFVAIFFIPLFYKLLSPSDKAMAK 1034 >gi|90414615|ref|ZP_01222588.1| protein export protein SecF [Photobacterium profundum 3TCK] gi|90324331|gb|EAS40900.1| protein export protein SecF [Photobacterium profundum 3TCK] Length = 315 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 167/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F L+ AI FMR + S++ +I + T LN+G+DF GG + V +P Sbjct: 1 MFQLLKVDNAIDFMRWSKFAFVFSLMMIAVAIGTVATKKLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL +R +LE+ GD QNF ++ LVRLQ + ++ + +++ Sbjct: 61 DLLKIRDSLEAAGFGDAIVQNFGTARDVLVRLQPRE-NAKGEVLGNQIIDALKVGTGQSV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +IIS I +L+Y+ +RF+W A GA+ L D+ T+G Sbjct: 120 EMRRIEFVGPNVGDELAEAGGLAIIISLICILLYVSMRFEWRLAAGAVLALAHDVIITIG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L +E +LT VAA+LT++GYS+ND +VV+DR+R+N + + D+I+ SI +TL Sbjct: 180 IFSLLQVEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-DVINNSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + + GG++I FA+ + GI V SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVIALFMKGGTMIHGFALALLIGITVGTYSSIYVASALALKLGITRE 297 >gi|77460840|ref|YP_350347.1| preprotein translocase subunit SecD [Pseudomonas fluorescens Pf0-1] gi|77384843|gb|ABA76356.1| preprotein translocase [Pseudomonas fluorescens Pf0-1] Length = 623 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 162/522 (31%), Positives = 273/522 (52%), Gaps = 36/522 (6%) Query: 31 MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90 ++ + + + LGLDL GG H +LEVD D ++ L++Y +++S L+KE + S Sbjct: 111 TTPQWLRNLAAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKLRYRS 170 Query: 91 MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 + Q+ I L F+D+ +E + + D ++ + ++ Sbjct: 171 LPQLNGAIQLGFSDADSREQARALIRKNFND-FDIVPADLNGQPVLR-------LAMTPA 222 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++LG TA Sbjct: 223 KLAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTA 282 Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 + F R+ +E + I+G + A A FD + P V Sbjct: 283 NLEFRLAAEP-GASKATSETFEFREGKRPPAQIERGLIITGDQVTDAKAGFDSQHGTPEV 341 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI---------------------- 308 +I D G TR N+G+ +AV+ + + Sbjct: 342 NIRLDGHGGDLMNRATRSNVGRSMAVIFIEQRPVTTYVKQVVDGVEKDVPVQTFKEEKKI 401 Query: 309 -----NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363 Q+ + +I+G + LA +LRAG L + EER +G LG+D+I K Sbjct: 402 ISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITK 461 Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 G A + G++ + LF+I +Y +GL+A ++ +N++L LAL+SLLGATLTLP IAGIVL Sbjct: 462 GIDASLWGMLFVSLFIIAIYRFFGLIATVALAVNMVLLLALMSLLGATLTLPGIAGIVLT 521 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD+N+L+ RIREE +V +++ GF RA++ I D+N+T L+ +LF G G Sbjct: 522 MGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAILDANLTTLLVGGILFAMGTG 581 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 582 PVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 623 Score = 141 bits (354), Expect = 6e-31, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 92/250 (36%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V V + + + ++ L G + + + Sbjct: 375 VTTYVKQVVDGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGLNGQGESSELALLLR 434 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I +++ F L A L Sbjct: 435 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRF-FGLIATVALA 493 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 +++ L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I Sbjct: 494 VNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMTVQRAI 550 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 ++ + ++ + + G + FA+ M+ GI + ++I + ++ Sbjct: 551 NEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 610 Query: 822 FIYDWRAKNA 831 I+ R Sbjct: 611 LIFGGRDFKK 620 Score = 45.8 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 23/118 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W IL + IGL+ + PN P + A +++ + D Sbjct: 4 KYPLWKYILILAVLAIGLIYSAPNLYPDDPAIQISGASTALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D + + S+ + + + D V L Sbjct: 51 LDRVSTALKES----------GINVKASSLAANGKGGLIRLTKAEDQLPAKDVVRKAL 98 >gi|89053576|ref|YP_509027.1| preprotein translocase subunit SecF [Jannaschia sp. CCS1] gi|88863125|gb|ABD54002.1| protein translocase subunit secF [Jannaschia sp. CCS1] Length = 328 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 112/306 (36%), Positives = 176/306 (57%), Gaps = 8/306 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+P + F + G SI+ I S+ + + GLN+GIDF GG + + Sbjct: 1 MRLRLVPQETSFDFFKYARVTFGASIVAVIASLVIWLSVGLNFGIDFLGGTTIRTDSTVQ 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V+++ R+ LE L +GD+ VR+Q Q G ++ ++ + Sbjct: 61 VEVAEYRAALEPLGLGDVVISEVFDPNFAADQHVVTVRIQAQEGAEAVTPEIILAIETAL 120 Query: 643 TEI-VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 E P T + E VGPK+S ELI+ I+ V+ S A+L+YIW+RF+W F++GA+ LI Sbjct: 121 LEAVDPAMTFPSVESVGPKVSGELIQTAIIAVLASLGAILVYIWLRFEWQFSVGAVAALI 180 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 DI T+G F+LF I F+L +AA+LT++GYS+ND VV++DR+R+N+ Y + RD++ Sbjct: 181 HDIILTIGVFSLFQIRFDLATIAALLTIVGYSINDTVVIFDRLRENLIKY-KQKALRDVM 239 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + S NETL R++ TS I+++ + V GG VI F +A+G+VV SSI++A ++L Sbjct: 240 NLSANETLSRTLMTSGTTLIALIALIVLGGDVIRGFVFAIAWGVVVGTYSSIYVAKNVVL 299 Query: 822 FIYDWR 827 I R Sbjct: 300 MIGVKR 305 >gi|16125060|ref|NP_419624.1| AcrB/AcrD/AcrF family protein [Caulobacter crescentus CB15] gi|221233787|ref|YP_002516223.1| cation/multidrug efflux pump AcrB2 [Caulobacter crescentus NA1000] gi|13422054|gb|AAK22792.1| AcrB/AcrD/AcrF family protein [Caulobacter crescentus CB15] gi|220962959|gb|ACL94315.1| cation/multidrug efflux pump acrB2 [Caulobacter crescentus NA1000] Length = 1051 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 72/691 (10%), Positives = 179/691 (25%), Gaps = 51/691 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + ++P + + + Sbjct: 9 RPIFAWVIAIVIMLAGALAI-----RTLPIAQYPEIALP-------------QVSISANY 50 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ L + + +TL+F + +V Sbjct: 51 PGASAKTVEDSVTQVIEQKMKGLDGLDYMSSTSDGSGSATVTLTFKAGTDIDIAQVQVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L + ++ L +++ + + + + + D + Sbjct: 111 KLQTATALLPQEVQQQGLTVAKSARNFMMVIGLYSEDPKTTGADLADYMASNLQDPLSRV 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L T A ++ N G Sbjct: 171 DGVGDIQLFGSQ-YAMRIWLDPQKLASFSLTPADVAAAIRAQNAQVSAGQIGGTPNLPGT 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 G + + + + I + G + Sbjct: 230 GLNATITAQSRL-------------QTPEQFRQIIVKNTSGGATVRLSDVARVELGAESY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L ++ + Sbjct: 277 ASIAKFNGYQAAGMAIKLAPGANALDTAAAVNARMAQLEKNFPANYKYVIPYDSTPFVKL 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + L+ ++ + ++ T +L+ G ++ ++ Sbjct: 337 SIEEVVKTLVEAIILVFIVMFLFLQNWRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTM 396 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + S + + + + V Sbjct: 397 FGLVLAIGLLVDDAIVVVENVERVMSEEGLSPKEATRKSMNEITGALIGIALVLAAVFVP 456 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 457 MAFFGGSQGVIYRQFSITIVSAMALSVVVALVLTPALTATMLKPVKAGHHEEKTGFFGWF 516 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + + W + + + + + +G + V Sbjct: 517 NRSFNDMSSRYQGSVRKILGKRGRWMAIYAAIIVAMGLLFVRLPSAFLPEEDQGTMFTLV 576 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ ++ + + + F V G +K Sbjct: 577 QLPAGATEEKTLAVLDQVRDHFLVGEKEAVQSVFTVSGFSFAGAGQNAGLAFVRLKDFEH 636 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 Q + + ++ Sbjct: 637 RKSANLKAQAVAGRAMGAFSQFRDAMVFAIV 667 Score = 86.7 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 90/241 (37%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V LS V + + + + +++ + ++ + P Sbjct: 261 VRLSDVARVELGAESYASIAKFNGYQAAGMAIKLAPGANALDTAAAVNARMAQLEKNFPA 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + I + + ++ + I + I +++ + W L + + + T Sbjct: 321 NYKYVIPYDSTPFVKLSIEEVVKTLVEAIILVFIVMFLFLQNWRATLIPTIAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G A FG N + ++ IG V+D +VV + + + +S ++ KS+NE Sbjct: 381 FGVLAAFGYSINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATRKSMNE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + ++ +PMA +GG VI F+I + + ++ ++ + + + Sbjct: 439 ITGALIGIALVLAAVFVPMAFFGGSQGVIYRQFSITIVSAMALSVVVALVLTPALTATML 498 Query: 825 D 825 Sbjct: 499 K 499 Score = 57.4 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W L I + L + L G+ ++ +LT +G + + +++ + + Sbjct: 893 SWSIPLAVIMVIPLGVIGALLATFARGLSNDIYFQVGLLTTMGLAAKNAILIVEFAKD-- 950 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 LY + + +++ L + TS+A VLP+A+ G + + G+ Sbjct: 951 -LYEKGMGLIEATLEAVRLRLRPIIMTSLAFVFGVLPLAISNGAGSGAQHAIGTGVIGGM 1009 Query: 806 VVAASSSI 813 + A +I Sbjct: 1010 ISATLLAI 1017 >gi|238788101|ref|ZP_04631896.1| Acriflavine resistance protein B [Yersinia frederiksenii ATCC 33641] gi|238723688|gb|EEQ15333.1| Acriflavine resistance protein B [Yersinia frederiksenii ATCC 33641] Length = 1048 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 67/558 (12%), Positives = 157/558 (28%), Gaps = 41/558 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S ITL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSSAGTASITLTFQAGTNPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + ++++ + + + D + Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT + N+ G D+ Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQNVVAAIQSQNSQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQAQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + A L + Sbjct: 276 DYLSRFNGQAASGMSIKLASGANELQTDKLVKARIAELSPFFPHGLEAKIAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSVFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + + + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + A+ +++ K + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIKQGHHHAKRGFFGWF 515 Query: 534 IPDCIAIQFMRARFWGVG 551 + R Sbjct: 516 NRTFDSSARRYERGVAHV 533 Score = 87.1 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 89/235 (37%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + ++++ +++ P Sbjct: 260 VTLGDVAKIEMGAEKYDYLSRFNGQAASGMSIKLASGANELQTDKLVKARIAELSPFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 ++FG N + A++ IG V+D +VV + + + + R+ KS+ + Sbjct: 380 FAILSVFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ +PMA +GG+ F+I + +V++ ++ + + Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ + L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029 >gi|167825733|ref|ZP_02457204.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 9] Length = 618 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 + + L A P +L + LGLDLRGG H +L+VD + L Sbjct: 98 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + + R+ L+ +GI + ++ + +FAD E + + + Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 ++ + V A++Q++ + R++++G+SE +Q+ G+ RI+++L Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249 PG QD ++ + ++G TA + P N G + L++ +V Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320 Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306 +G + A+A FD +P V+I D G R V+R+NIGKP+A+VL + + Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I G Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G V I +FMI Y +G+V+ + +N++L +A+LSL+ ATLTLP IA I L +G+ Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLLVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 A+DSN+L+NERIREE R+ S ++ G++ A++TI DSN+T LIA + L FG G VR Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 FAI L IL SMF+A+ R ++ +K Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593 Score = 127 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 89/209 (42%), Gaps = 4/209 (1%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G Q + + + I +GP + + IR G VI +A+ +++ Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + F + ++ L++++ + +L L +AA+ +G +++ V++ +R+ Sbjct: 453 IAYY-MLFGVVSVLGLLVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ ++ S + I + + +++ I+ L + +G + +FAI G Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + S++F + ++ Y R K + Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597 >gi|33592186|ref|NP_879830.1| preprotein translocase subunit SecF [Bordetella pertussis Tohama I] gi|33595817|ref|NP_883460.1| preprotein translocase subunit SecF [Bordetella parapertussis 12822] gi|33600345|ref|NP_887905.1| preprotein translocase subunit SecF [Bordetella bronchiseptica RB50] gi|33565896|emb|CAE36444.1| protein-export membrane protein [Bordetella parapertussis] gi|33567944|emb|CAE31857.1| protein-export membrane protein [Bordetella bronchiseptica RB50] gi|33571831|emb|CAE41344.1| protein-export membrane protein [Bordetella pertussis Tohama I] gi|332381603|gb|AEE66450.1| preprotein translocase subunit SecF [Bordetella pertussis CS] Length = 311 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 159/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ + T G + I+F GG + V + Sbjct: 1 MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEFTGGTVMEVSYAQTAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ + +L D QNF ++ ++RL G + A E V + P Sbjct: 61 LDQVRTAIGTLGYTDFQVQNFGTSRDVMIRLPIAEGQTSATQS--ETVMGALKAADPAVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP+I +EL+ G++ +++ I +++Y+ +RF+W FA+ + + D+ LGF Sbjct: 119 LRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKFAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +A VL ++GYSVN+ VV+ DR+R+N + Y S +++I+ +I +T+ Sbjct: 179 FAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRK-ASVQEVINSAITQTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + F++ + GI SS+F+AA + +++ R Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPTLHYFSLALTIGIWFGIYSSVFVAAALAMWMGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 Score = 44.3 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 93/183 (50%), Gaps = 5/183 (2%) Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNV 398 + + VG +G + ++ G A++ ++ I++++ + + K+ + + +V Sbjct: 113 ADPAVELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKFAVAGVIANLHDV 172 Query: 399 ILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGF 456 ++ L + +L +AG++ +G +V+ ++++ +RIRE RK + SV ++ Sbjct: 173 VIILGFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKASVQEVINSAI 232 Query: 457 SRAYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 ++ S TI T ++ +LFF GG + F++ + + I +++++ + A+ +++ Sbjct: 233 TQTISRTIITHGSTQMMVLAMLFF-GGPTLHYFSLALTIGIWFGIYSSVFVAAALAMWMG 291 Query: 516 RYK 518 + Sbjct: 292 VKR 294 >gi|30249130|ref|NP_841200.1| preprotein translocase subunit SecD [Nitrosomonas europaea ATCC 19718] gi|30180449|emb|CAD85054.1| SecD/SecF/SecDF export membrane proteins [Nitrosomonas europaea ATCC 19718] Length = 615 Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats. Identities = 155/520 (29%), Positives = 292/520 (56%), Gaps = 22/520 (4%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 I N LP S ++ + + LGLDLRGG H +L+VD + L Y+ +LRS Sbjct: 99 YIVALNLLPNSP--QWMRHIGALPMYLGLDLRGGVHFMLQVDMAGALTKALDRYNADLRS 156 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-QGVNSKLNVDPKKNLLVTT 138 L+++ I + + +++I + F D + +E ++ +V+ ++ L+ + Sbjct: 157 TLREQRIPSAGIDRDRSRIIIKFRDEQAREKAISELGKTFEDLAFRSEDVNGERRLVASI 216 Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198 + + + + A+++++ +R R++++G++E IQ+ G+ R+++QLPG QD Sbjct: 217 KPEALIRM---------QNTAVQRNITTLRNRVNELGVAEPIIQQAGADRVIVQLPGVQD 267 Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-----RDSDGNQYLVEDKVEISGIH 253 ++ + +LG TA + V + + G + G LV+ +V ++G Sbjct: 268 TAKAKDILGRTATLEVRMVDEDGDIDAALRGSVPSGTELLSERGGGHLLVKKQVLLTGDR 327 Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT----APVIN 309 + A FD + V ++ D G+R F ++TR+N+GK +A++L + +T APVI Sbjct: 328 ITDAQPGFDQDR-QAAVHVTLDNNGSRIFKQLTRNNVGKRMAILLVEKNVTEVVTAPVIR 386 Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369 + I G+ QISG A +A +LRAG+L + I+EER VG LG+++I +G + + Sbjct: 387 EEIGGGRVQISGQMNSIEARDVALLLRAGALAAPMEIIEERTVGPSLGAENIERGFNSTL 446 Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429 G +++ +F+++ Y G+++ ++ N++ + LLS+L ATLTLP +AG+ L +G+A+D Sbjct: 447 YGFLIVSVFIMIYYSAIGVISVVALATNLLFLIGLLSILQATLTLPGMAGMALTVGMAID 506 Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 +N+L+NERIR+E R + ++ G+ RA+ I D+N+T L+A + L FG G ++GFA Sbjct: 507 ANVLINERIRDELRHGATPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMMFGSGPIKGFA 566 Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529 + + L IL ++F+A+++ RAM+ +K+ + I + Sbjct: 567 VVLCLGILTTLFSAVTVSRAMVNLFYGNRKLTHVPIGAIK 606 Score = 125 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 81/207 (39%), Gaps = 4/207 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + + I VGP + E I +G + + + Sbjct: 394 VQISGQMNSIEARDVALLLRAGALAAPMEIIEERTVGPSLGAENIERGFNSTLYGFLIVS 453 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++I I + + ++ L ++ +G ++ L +A + +G +++ V++ Sbjct: 454 VFIMIYYS-AIGVISVVALATNLLFLIGLLSILQATLTLPGMAGMALTVGMAIDANVLIN 512 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R ++ + + I + T++ ++ L + ++G I FA+ + Sbjct: 513 ERIRDELR---HGATPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMMFGSGPIKGFAVVL 569 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRA 828 GI+ S++ ++ ++ Y R Sbjct: 570 CLGILTTLFSAVTVSRAMVNLFYGNRK 596 Score = 40.1 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I+ ++ +GLL LPNF +S + LR G + Sbjct: 3 RYPLWKYIVIAVSILLGLLYTLPNFFGESPAVQISP------------LRAGIQTDM--- 47 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 LK+ G+ I + F+D+ + D + + Sbjct: 48 ----------ALLQRAEQVLKQHGLPYNGTILESTGIKIRFSDTDTQIKARDILDAEV 95 >gi|163857963|ref|YP_001632261.1| preprotein translocase subunit SecF [Bordetella petrii DSM 12804] gi|163261691|emb|CAP43993.1| secF [Bordetella petrii] Length = 310 Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats. Identities = 86/302 (28%), Positives = 156/302 (51%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ + T G + I+F GG + V + Sbjct: 1 MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEFTGGTVMEVNYAQTAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VRS + L D QNF + ++RL G + A + V + + Sbjct: 61 LDSVRSAVSKLGYTDFQVQNFGTSHDVMIRLPLTEGQTSAAQS--DAVMGALKAADSTAE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL+ G++ ++ I +++Y+ +RF+W FA+ + + D+ LGF Sbjct: 119 LRRVEFVGPQVGQELLHNGLMALLFVVIGIMVYLGMRFEWKFAVAGVIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +A VL ++GYSVN+ VV+ DR+R+N + S +++I+ +I +T+ Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKQRK-ASVQEIINSAITQTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI SS+F+AA + +++ R Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPSLHYFALALTIGIWFGIYSSVFVAAALAMWMGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|146284251|ref|YP_001174404.1| multidrug/solvent RND transporter TtgB [Pseudomonas stutzeri A1501] gi|145572456|gb|ABP81562.1| multidrug/solvent RND transporter TtgB [Pseudomonas stutzeri A1501] Length = 1045 Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats. Identities = 69/547 (12%), Positives = 156/547 (28%), Gaps = 38/547 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLAGALSIL-----TLPVNQYPSIAPPAV---------GISVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + + +IT++F + +V LQ Sbjct: 54 AQTVQDTVVQVIEQQLNGIDGLRYISSASNSDGSMEITVTFDQGTNPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T +++ + + I+ D I ++ Sbjct: 114 ATPLLPQEVQQQGIRVTKAVRNFLIIIGLVSTDGRLDQRDLANYIVANMQDPISRTKGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T +S N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFSLTPVDVSAAIQAQNVQVSSGQLGGLPALPGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V K + + + + + Sbjct: 233 TVIGKTRL-------------QTPEQFRNILLKVNSDGSQVRLGDVAKVELGGENYSVSA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T+E L+ P + S + Sbjct: 280 HFNGKPAAGLALKLATGANALDTVEGVRKTIDELKPFFPPGVEVVYPYDTTPVISASITG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + LV ++ + ++ T +L++ G ++ ++ ++ Sbjct: 340 VMQTLLEAFVLVFLVMYLFLQNFRATLVPTLAVPVVLLGTFGVLAVFGFSINTLTMFAMI 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMREEGLSPLEATRKSMGQIQGALIGIGVVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG R F+IT+ ++++S+ A+ A+ + +K ID Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVLVALIFTPALCATL-----LKPIDKGEHHEKGGFFGW 514 Query: 538 IAIQFMR 544 F R Sbjct: 515 FNRTFDR 521 Score = 77.4 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 85/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +S L +++ + ++ Sbjct: 258 SQVRLGDVAKVELGGENYSVSAHFNGKPAAGLALKLATGANALDTVEGVRKTIDELKPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + ++ + + + + +++ + + L + + + Sbjct: 318 PPGVEVVYPYDTTPVISASITGVMQTLLEAFVLVFLVMYLFLQNFRATLVPTLAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A+FG N + A++ IG V+D +VV + + + +S + KS+ Sbjct: 378 GTFGVLAVFGFSINTLTMFAMILAIGLLVDDAIVVVENV--ERVMREEGLSPLEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G + + +LPMA +GGS F+I + +V++ ++ + Sbjct: 436 GQIQGALIGIGVVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMVLSVLVALIFTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 72/193 (37%), Gaps = 8/193 (4%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 + + + L G L + + +S + + + + ++ W Sbjct: 837 DAMAEVERIAAQLPPGVGYSWTGQSYEERLAGSQTLALYALSLLVVFLCLAALYESWSIP 896 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L I L F G+ + ++T IG S + +++ + + L+ Sbjct: 897 FSVMLVVPLGIVGALAFTLARGLSNEVFFQVGLVTTIGLSARNAILIVEFAK---ALHEQ 953 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810 +S+ D ++ L + TS+A + V+P+A+ G + + G++ AA Sbjct: 954 GMSYADAALRACRMRLRPIIMTSLAFILGVVPLAIASGAGAGSKHAIGTGVIGGMLTAAV 1013 Query: 811 SSIFIAAPILLFI 823 +IF + I Sbjct: 1014 LAIFWIPLFYVMI 1026 >gi|118602967|ref|YP_904182.1| protein translocase subunit secF [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567906|gb|ABL02711.1| protein translocase subunit secF [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 308 Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats. Identities = 102/293 (34%), Positives = 164/293 (55%), Gaps = 7/293 (2%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + I F+ R + V S+L SI L +G GIDF GG + V + VDLS +R Sbjct: 7 NIPTIDFIGKRTYAVIFSVLLVTASIVSLTMNGFKLGIDFTGGTLIEVGYQQDVDLSEIR 66 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + L + Q F L+ L+ Q S + + + + I+ E Sbjct: 67 AMLAKANFKGANVQYFGSINEVLIHLEPQSISSAKLSSKIIHL------LGDDVNIRRIE 120 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGPK+ EL G + ++ + I +LIY+ IRF++ F+LG+I TLI D+ LGFF+LF Sbjct: 121 FVGPKVGDELTNDGGLAMLYALIGILIYVTIRFEYRFSLGSIATLIHDVIIILGFFSLFQ 180 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IEF+LT +AA+L +IGYS+ND +VV+DR+R+N S + +I+ ++N+TL R++ T Sbjct: 181 IEFDLTVLAAILAVIGYSLNDTIVVFDRIRENFLSTRYVDSPK-IINDALNQTLSRTIMT 239 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 S+ + +L + GG +I +FA+ + G+VV SSI++A+ I+L + + Sbjct: 240 SLTTLLVLLALFFLGGEIIHNFALVLLIGVVVGTYSSIYVASSIILALGITKE 292 >gi|119509588|ref|ZP_01628735.1| protein export protein SecF [Nodularia spumigena CCY9414] gi|119465777|gb|EAW46667.1| protein export protein SecF [Nodularia spumigena CCY9414] Length = 325 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 138/250 (55%), Gaps = 10/250 (4%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++P+D++ VR ++ +GD S Q + ++ + D +T + + +KI Sbjct: 63 NCDQPIDINTVREVAQAQGLGDSSIQIVGENG---ISIRSKDLDVDQRTNLQTALTEKIG 119 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 P + VGP + EL R GI+ +I+S ++IY+ RF+ +AL AI L D Sbjct: 120 TFDP--QKNQIDTVGPTLGAELFRSGIIALIVSFAGIIIYLTFRFQLDYALFAIVALFHD 177 Query: 704 ITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 + TLG F++FG+ E + + ++LT+IG+SVND VV+YDR+R+ +K+ D Sbjct: 178 VLVTLGVFSIFGLVLGTEVDSLFIVSLLTIIGFSVNDTVVIYDRIRETIKVNPER-PIAD 236 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++D ++N+TLGRS+ TS+ + + + GG + +FA+ + G A SS+FIA+ + Sbjct: 237 IVDDAVNQTLGRSINTSLTTMLPLFAIYFLGGETLKNFALALIIGFTAGAYSSLFIASTL 296 Query: 820 LLFIYDWRAK 829 L + + K Sbjct: 297 LAWWRERTGK 306 >gi|170761742|ref|YP_001788382.1| preprotein translocase subunit SecF [Clostridium botulinum A3 str. Loch Maree] gi|169408731|gb|ACA57142.1| protein-export membrane protein SecF [Clostridium botulinum A3 str. Loch Maree] Length = 287 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 147/287 (51%), Gaps = 8/287 (2%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS++ + + L GLNYGIDFKGG + + + V ++ Sbjct: 7 KTKIWFSISLIIILTGMFFLMKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 ++ + N + ++ ++ VK K + + + +GP + +E Sbjct: 67 SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L RK ++ +II+ IAMLIY+ IRF++ F L AI L+ DI T+ +A+F + + + +A Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFKFGLAAILGLVHDILITVSIYAIFKLPVSSSFIA 180 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 AVLT++GYS+ND +V++DR+R+N K ++ + SI +T+ RS+ T + +++ Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANISITQTMSRSINTVLTTLFTIV 239 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + V+ I FA P+ GI+ SSIFI++P+ + + N Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKSKLANK 285 >gi|302038578|ref|YP_003798900.1| protein-export membrane protein SecF [Candidatus Nitrospira defluvii] gi|300606642|emb|CBK42975.1| Protein-export membrane protein SecF [Candidatus Nitrospira defluvii] Length = 305 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 79/289 (27%), Positives = 140/289 (48%), Gaps = 5/289 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSVV 594 I FM R IS + + + + N GIDF GG + + + + + Sbjct: 8 TNIDFMGKRSITFVISGILAFLGLIAVLQIARGAANLGIDFAGGTAVQLKFEQAMKIDEA 67 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R LE+ +G Q F + L+R++ + V K + Sbjct: 68 RRALENNGLGSAELQEFTQDNKLLIRVKASTTIEEKVAERVMAVFSKEFPANKFVVDSSM 127 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 E +GP I ++L ++ V+IS + +++YI +RF+ F + A D+ LG F L Sbjct: 128 E-IGPTIGKKLQEDAMIAVLISFVGIVLYIAVRFELRFGVAAALATFHDVLAVLGVFYLL 186 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 E L + A+LTL GYS+ D VVV+DR+R+N++ +I+++IN+ L R++ Sbjct: 187 DKEITLLVITALLTLAGYSLTDTVVVFDRIRENLRT-RRREDEETIINQAINQVLSRTIV 245 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 TS+ I ++P+ + G V+ F++ + G++ SS+F+A+P+LL Sbjct: 246 TSLTVVIVLIPLVLAGAEVLHDFSLALLGGVMFGTYSSVFVASPLLLLW 294 >gi|325981737|ref|YP_004294139.1| protein-export membrane protein SecF [Nitrosomonas sp. AL212] gi|325531256|gb|ADZ25977.1| protein-export membrane protein SecF [Nitrosomonas sp. AL212] Length = 312 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 97/298 (32%), Positives = 168/298 (56%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM+ R G ISI+ I ++ + T GLN G+DF GG L + ++ D Sbjct: 1 MELFRFQHNIPFMKWRRVGAVISIVTFILAVFFISTKGLNLGVDFTGGTVLEIGYSQTAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R L L++ D S Q+F + L+RL +P S AQ + E+V + E+ Sbjct: 61 LEKIRGVLTGLEMSDASVQSFGTSREVLIRLPIKPEFSSAQ--LSEIVLNALREVDSSVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL+ G + ++ ++ ++ Y+ +RF+W F + I + D+ LGF Sbjct: 119 MRRVEFVGPQVGQELLENGALALLFVSLGIVAYLAVRFEWKFGVAGIVANLHDVIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+LT +AAVL ++GYSVN+ VV++DR+R+N + S +ID +I +T+ Sbjct: 179 FAFFQWEFSLTVLAAVLAILGYSVNESVVIFDRIRENFRKLRK-ASVTQVIDGAITQTMS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T + + V+ + ++GG V+ F++ + GI+ SSI + + I++ + R Sbjct: 238 RTIITHGSTQMVVIAILIFGGEVLYYFSLALTIGILFGIYSSIMVGSSIIVLLGAKRE 295 >gi|258590881|emb|CBE67176.1| Protein-export membrane protein secD [NC10 bacterium 'Dutch sediment'] Length = 515 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 186/526 (35%), Positives = 285/526 (54%), Gaps = 27/526 (5%) Query: 16 CIGLLIALPNFLPQSMLDRFPSAM--PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I P +S L + R++LGLDL+GG HLVLEV + V + Sbjct: 1 MIAGYYLFPTLSGRSSLPSLLPPLLPRAERLNLGLDLQGGMHLVLEVVAEKAVENTIDRL 60 Query: 74 SDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 ELR K I V M + ++I + + E + + + Sbjct: 61 IAELRRETDKANILVEQMTREGIDRIRIKLQATEGLEGVRRILKNYSNL----------- 109 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 + E+ + L+ + ++ A+ QS+E IR RIDQ G++E I + G RI++Q Sbjct: 110 QESGGSGPTELILSLASGEMKRMQESAVRQSLETIRNRIDQFGVAEPHIVQEGDRRIVVQ 169 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------------DGN 239 LPG ++P R L+G TA + F V + + + G D + Sbjct: 170 LPGIKEPQRAINLIGKTALLEFKLVAEDANLAEAVAGRISENDQLLYLRSTDEQQKMNKV 229 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 +V+ + ++G L A D +T++PVV I FD+ G R F E T N+G+ LA+VLD Sbjct: 230 PIVVQKRAVLTGDLLTSAQVQIDSQTNQPVVSIEFDQEGTRLFGEATAANVGRRLAIVLD 289 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + +APVI + IP GKAQISG+FT+E A LA +LRAG+LP +NI+ VG LG D Sbjct: 290 DTIYSAPVIREKIPGGKAQISGSFTMEDARDLAIVLRAGALPAPVNIISNLTVGPSLGLD 349 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 SI KG A + G L++ FM + Y G++A+ ++ LN+I + L+ L ATLTLP IAG Sbjct: 350 SIQKGVQAAILGGALVIAFMAIYYKLSGVIANLALVLNLIWLVGALASLRATLTLPGIAG 409 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 I+LGIG+AVDSN+L+ ERIREE R + V +++ G+ +A+ TI DS++T LI LF Sbjct: 410 IILGIGMAVDSNVLILERIREELRSGKPVRSAIEGGYDKAFLTIIDSHVTTLITACALFL 469 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 FG G V+GFA+T+ L ++ ++ TA++ R + ++ + +K++ I Sbjct: 470 FGTGPVKGFAVTLSLGVIFNLVTALTGTRVVYDWMTQRWNLKTLSI 515 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 81/181 (44%), Gaps = 5/181 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + VGP + + I+KG+ I+ ++ ++ I +K + A L+L++ +G A Sbjct: 338 SNLTVGPSLGLDSIQKGVQAAILGGALVIAFMAIYYKLS-GVIANLALVLNLIWLVGALA 396 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L +A ++ IG +V+ V++ +R+R+ ++ + R I+ ++ Sbjct: 397 SLRATLTLPGIAGIILGIGMAVDSNVLILERIREELR---SGKPVRSAIEGGYDKAFLTI 453 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + + + I+ + ++G + FA+ ++ G++ +++ ++ R Sbjct: 454 IDSHVTTLITACALFLFGTGPVKGFAVTLSLGVIFNLVTAL-TGTRVVYDWMTQRWNLKT 512 Query: 833 I 833 + Sbjct: 513 L 513 >gi|301154787|emb|CBW14250.1| SecYEG protein translocase auxillary subunit [Haemophilus parainfluenzae T3T1] Length = 605 Score = 204 bits (518), Expect = 6e-50, Method: Composition-based stats. Identities = 149/524 (28%), Positives = 280/524 (53%), Gaps = 39/524 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P+ + N + GLDLRGG ++EVD + + + D LR+ L+KE I Sbjct: 93 NLAPATPAWLSSIGANPMKWGLDLRGGVRFLMEVDMNSALAKRQEQLQDTLRNELRKEKI 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +++ T++ ++ A + + + +++ Sbjct: 153 QFTAIKNGDKFGTTVTLENADQMSKAARIIRQL-----------HPTLDVSDIGDNTLNL 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 LS+ ++ + + AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++ Sbjct: 202 ALSEASLTESRNLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + + G+ D G + + + G H+ +++ Sbjct: 262 LGATATLEFRIVNSLVNPESAARGMLPSDTEIKYDRQGRPVALYKRAVLGGEHIINSSSG 321 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306 D T P V ++ D G + T+ KP+A + Sbjct: 322 LDQNTSTPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKSEE 381 Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q S QI+G + A L+ +L++G+L + IVEER +G LG+ ++ Sbjct: 382 VINVATIQGRFSSNFQITGVSSSAEAQNLSMLLKSGALIAPVQIVEERTIGPSLGAQNVE 441 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421 +G A GL+ +++FM+V Y +G++A F++ +N++L + L+S+L ATLT+P IAGIV Sbjct: 442 QGIDASFWGLIAVIVFMLVYYKVFGIIASFALVINIVLLVGLMSILPGATLTMPGIAGIV 501 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G++VD+N+L+ ERI+EE R + + +++ G++ A+++IFD+N+T ++ ++L+ G Sbjct: 502 LTLGMSVDANVLIFERIKEEIRNGRPIQQAINEGYNGAFTSIFDANLTTILTAIILYAVG 561 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G ++GFA+T+ L + ISMFTAI+ RA++ F+ K+++ + I Sbjct: 562 TGPIQGFAVTLALGVAISMFTAITGTRAIVNFLYGGKRLEKLSI 605 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +GI IA+++++ + +K F + A L+++I +G ++ Sbjct: 430 TIGPSLGAQNVEQGIDASFWGLIAVIVFMLVYYKV-FGIIASFALVINIVLLVGLMSILP 488 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G + +A ++ +G SV+ V++++R+++ ++ + I++ N Sbjct: 489 GATLTMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRPIQQAINEGYNGAFTSIFD 545 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G I FA+ +A G+ ++ ++I I+ F+Y + Sbjct: 546 ANLTTILTAIILYAVGTGPIQGFAVTLALGVAISMFTAITGTRAIVNFLYGGKRLEK 602 >gi|157144599|ref|YP_001451918.1| aminoglycoside/multidrug efflux system [Citrobacter koseri ATCC BAA-895] gi|157081804|gb|ABV11482.1| hypothetical protein CKO_00319 [Citrobacter koseri ATCC BAA-895] Length = 1037 Score = 204 bits (518), Expect = 6e-50, Method: Composition-based stats. Identities = 75/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATVTLSFVAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQMTAKDVTDAIESQNAQIAVGQLGGTPSVDRQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVKLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L V Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMETAKLVLNRLDELAEYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFDYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLHKGEHHGQKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L + L + +G V Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGAMVVLFLRLPTSFLPQEDRGMFITSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVQEVEKYYFTQEKDNVMSVFSTVGSGPGGNGQNVARMFVRLKDWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ + Sbjct: 636 RNATTGTSFAIIERATKAFNKIKEARVYA 664 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + + +++ ++ E P Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMETAKLVLNRLDELAEYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 F N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FSVLYAFDYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + D + + L + TS+A VLPMA+ Sbjct: 936 SAKNAILIVEFANE---MNEKGHDLLDATLHACRQRLRPILMTSLAFIFGVLPMAISNGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + + Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPK 1035 >gi|312897347|ref|ZP_07756773.1| protein-export membrane protein SecF [Megasphaera micronuciformis F0359] gi|310621565|gb|EFQ05099.1| protein-export membrane protein SecF [Megasphaera micronuciformis F0359] Length = 311 Score = 204 bits (518), Expect = 6e-50, Method: Composition-based stats. Identities = 76/297 (25%), Positives = 149/297 (50%), Gaps = 1/297 (0%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + ++ R W +S L + SI + +G N+GID+ GG L + + V +S VR Sbjct: 1 MKFSIVKHRKWWFTLSTLLVVASIVSIVMNGFNFGIDYTGGTILDLRFGKAVTVSEVRQV 60 Query: 598 LESLQIG-DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L++ + D S G + + + K + + S ++ TE Sbjct: 61 LDTSGMNLDNSVIQLTGVTEGDSSQDVMIRMRNLSSDETKALADKFSAQLGNSEVKRTES 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG I E+ + + + ++ IA+ YI RF++ A+ AI +++ D+ LG F+ F + Sbjct: 121 VGAVIGAEVTKNAVTSLAVAFIALAAYISFRFEYKIAVSAIVSILHDLIMVLGVFSFFRL 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 E + + +AA+LT++GYS+N+ VV++DR+R+N++ + + ++ L + SI +++ RS+YT Sbjct: 181 EIDASFLAAILTVVGYSMNEAVVIFDRVRENIRTHRRTDTYECLAEDSIAQSIHRSIYTL 240 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ + +GG +F++ M G + A SSI + + + K + Sbjct: 241 TTVLLACGSLHFFGGESTKNFSLVMLIGFISGAYSSICVDTSLWVVWKSRTDKRRGL 297 >gi|300922171|ref|ZP_07138308.1| putative ATP synthase F0, A subunit [Escherichia coli MS 182-1] gi|300421486|gb|EFK04797.1| putative ATP synthase F0, A subunit [Escherichia coli MS 182-1] Length = 1037 Score = 204 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGPTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 87/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGPTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|124514657|gb|EAY56169.1| SecD export membrane protein [Leptospirillum rubarum] Length = 524 Score = 204 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 171/513 (33%), Positives = 272/513 (53%), Gaps = 35/513 (6%) Query: 29 QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 + + + +P +ISLGLDL+GG + L+VD + V+G LQ + Sbjct: 31 KDLPEGLRKVLPSGKISLGLDLKGGMSVTLQVDREKAVDGTLQEIAT-------AMKTPA 83 Query: 89 FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148 I + + + L + ++ ++ LS Sbjct: 84 MQPSIQGATIHFPVPKGEQ----RETIKKRIARHYPYL-------TISSSDASGVTFSLS 132 Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 ++ +HA+ Q+ME+IR RIDQ G++E I+R G RIL++LPG DP R L+G Sbjct: 133 PAEQKRIRTHAMTQAMEVIRNRIDQFGVAEPLIERQGKDRILVELPGINDPERAMSLIGR 192 Query: 209 TAKMSFHKVLPNNSKKGFMFG----------------VRFLRDSDGNQYLVEDKVEISGI 252 TA++ F V N + YL+ +SG Sbjct: 193 TARLQFLLVDDKNPDADKILEKKAPVPSADEILFSHRTDANGQRIELPYLLVRGALMSGD 252 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312 ++ A F +P V ++F+ GA+ F +TR+++ + LA+VLD V +APVI + I Sbjct: 253 LISDARVAFGQFN-EPYVSLTFNSAGAKLFDTITREHVKERLAIVLDNVVYSAPVIQEEI 311 Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372 G+AQI+GNFT++ A L+ +LR+G+LP ++I++ VG LG DSI G A + Sbjct: 312 AGGQAQITGNFTLKEAKDLSIVLRSGALPAPVHILQNVTVGPSLGKDSIRAGIRATIFAG 371 Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432 +L++LFM V Y G++AD ++ LN+IL + ++ L ATLTLP IAGI+L IG+ VDSN+ Sbjct: 372 ILVLLFMAVYYRLSGMIADGALVLNLILLVGAMAALHATLTLPGIAGIILTIGMGVDSNV 431 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 L+ ERIREE R + V ++D G+ +A+ TI DS++T LI ++LF FG G ++GFA+T+ Sbjct: 432 LIFERIREELRLGKPVRSAIDSGYDKAFLTIVDSHVTTLITALILFIFGTGPIKGFAVTL 491 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 + I I++FTA+ R + + KK+ + I Sbjct: 492 SVGIAINLFTALVGTRVVFDAMTARKKLDRLSI 524 Score = 144 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 87/184 (47%), Gaps = 5/184 (2%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I VGP + ++ IR GI I + I +L+++ + ++ + A L+L++ +G Sbjct: 344 HILQNVTVGPSLGKDSIRAGIRATIFAGILVLLFMAVYYRLS-GMIADGALVLNLILLVG 402 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 A L +A ++ IG V+ V++++R+R+ ++L R ID ++ Sbjct: 403 AMAALHATLTLPGIAGIILTIGMGVDSNVLIFERIREELRL---GKPVRSAIDSGYDKAF 459 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 V + + I+ L + ++G I FA+ ++ GI + +++ + ++ R K Sbjct: 460 LTIVDSHVTTLITALILFIFGTGPIKGFAVTLSVGIAINLFTAL-VGTRVVFDAMTARKK 518 Query: 830 NARI 833 R+ Sbjct: 519 LDRL 522 >gi|333002254|gb|EGK21818.1| inner membrane protein [Shigella flexneri K-272] gi|333016076|gb|EGK35408.1| inner membrane protein [Shigella flexneri K-227] Length = 1037 Score = 204 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVIYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 80.1 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + I++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVIYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.6 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATRMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|56476206|ref|YP_157795.1| preprotein translocase subunit SecF [Aromatoleum aromaticum EbN1] gi|56312249|emb|CAI06894.1| probable-export membrane transmembrane protein [Aromatoleum aromaticum EbN1] Length = 310 Score = 204 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 159/302 (52%), Gaps = 2/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ L T GL+ ++F GG + V + Sbjct: 1 MEFFRIKKDIPFMRHALTFNIISLITFLLAVFFLATSGLHLSVEFTGGTLVEVTYPEAPE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R L D QNF ++ L+RL + A+ L + + P Sbjct: 61 LEPIREALGDAGYPDAQVQNFGSARDVLIRLPNRDDLDTARVSEL-TLATLQSVAGPTPE 119 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL G + +++ +++Y+ IRF+W FA+ AI + D+ LGF Sbjct: 120 LRRVEFVGPQVGKELATDGAMALLLVIFGIVVYLAIRFEWRFAVSAIIANLHDVIIILGF 179 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AAVL ++GYSVN+ VVV+DR+R+ K ++S ++D +I T+ Sbjct: 180 FAFFQWEFSLPVLAAVLAVLGYSVNESVVVFDRVRETFKK-RRNLSTPQVLDHAITSTIS 238 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R+V T + I VL M ++GG+ + FA+ + GI+ SS+ +A+P+++++ R + Sbjct: 239 RTVITHGSTQIMVLSMLLFGGATLHYFAMALTIGILFGIYSSVLVASPLVMWLGVSREQF 298 Query: 831 AR 832 + Sbjct: 299 VK 300 >gi|239617984|ref|YP_002941306.1| protein-export membrane protein SecF [Kosmotoga olearia TBF 19.5.1] gi|239506815|gb|ACR80302.1| protein-export membrane protein SecF [Kosmotoga olearia TBF 19.5.1] Length = 304 Score = 204 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 95/305 (31%), Positives = 160/305 (52%), Gaps = 9/305 (2%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL---- 591 F+ R + +S++ ++ ++FT G N G+DF GGI++ V + Sbjct: 1 MRYNFDFVGKRKGFLTLSLVLVALTLVMVFTKGFNLGVDFTGGIEISVTVSDLEMSVGEM 60 Query: 592 ----SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 S V ES +I +G + L R Q +++K ++ V Sbjct: 61 RGLLSSVNPIFESARIIKQKPLTQEGSSDQLARFSIVVNSENEQGLKEDIIKALTSKGVK 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 S I + + ++E+ VI++ +L+YI IRF++ F +GAI L+ DI T Sbjct: 121 SSNILSVNRISGFAAQEIKGYAWTAVIVAVALILLYITIRFRFSFGIGAIIALVHDILIT 180 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LGF+++FGIE N VAA+LTL+GYS+ND +VVYDR+R+N++ S +++++SINE Sbjct: 181 LGFYSIFGIEINAPVVAALLTLLGYSLNDTIVVYDRVRENLRKL-RGKSIEEIVNRSINE 239 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + RS+ TS+ F +VL + ++ G V+ FA + G+VV SS+ IAAP+++ Sbjct: 240 VIVRSLNTSLTTFTAVLMLFIFSGEVLRPFAFGIMVGVVVGTYSSLHIAAPVVITWLGRS 299 Query: 828 AKNAR 832 + Sbjct: 300 KVKIK 304 >gi|126668569|ref|ZP_01739523.1| protein export protein SecD [Marinobacter sp. ELB17] gi|126626974|gb|EAZ97617.1| protein export protein SecD [Marinobacter sp. ELB17] Length = 624 Score = 204 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 155/522 (29%), Positives = 271/522 (51%), Gaps = 37/522 (7%) Query: 32 LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 P + + LGLDLRGG H +LEVD + V+ ++ S +++ L++E I Sbjct: 107 AASTPGWLRSLGAGPMKLGLDLRGGVHFLLEVDMETAVSQRMEALSGQIKRELREERIRY 166 Query: 89 FSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147 ++ I LSF D + + E+ I++ L Sbjct: 167 RGGELEGDREIILSFRDDESRAEAFTLIRRQYLQFLMD--------ERTRGDERLIALTL 218 Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207 S + + +++EQ++ IR R++++G++E +QR GS RI+++LPG QD ++ +++LG Sbjct: 219 SDAEVRSIQEYSLEQNLTTIRNRVNELGVAEPLVQRQGSSRIIVELPGVQDTAQAKRVLG 278 Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 TA + F RD+ +E ++ +G ++ A FD + Sbjct: 279 ATANLEFRMEA-RPDTPAGSIEAFGFRDTPERTARLERELIATGNNVANAQQQFDENG-Q 336 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV-------------------- 307 P V I+ D +G TR+ +G+ +AV+ Sbjct: 337 PQVSITMDSVGGDLMNRATRNAVGRRMAVLFIEFRTETENRMVDGEVVTEEKRVVDKGII 396 Query: 308 ---INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 Q+ +I+G +I A LA +LRAG+L + V+ER +G LG +I G Sbjct: 397 SLATVQSALGASFRITGLDSIPEASELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAG 456 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424 +++ G VL++++M + Y +GL+A+ S+ LN++L +A +S+L ATLTLP IAGIVL + Sbjct: 457 MMSVLLGFVLVLIYMALYYRGFGLIANVSLTLNLMLLIACMSILSATLTLPGIAGIVLTV 516 Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484 G+AVD+N+L+ ERIREE + + +++ G+SRA+ +IFD+NIT L+ ++LF G G Sbjct: 517 GMAVDANVLIFERIREELKAGTAPQLAINAGYSRAFVSIFDANITTLLVALILFAMGSGP 576 Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 V+GFAIT+ L I+ SMF+ + + R+++ + ++++ + I Sbjct: 577 VKGFAITLSLGIMTSMFSGLLVSRSIVNVVYGGRRVEKLSIG 618 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 104/276 (37%), Gaps = 4/276 (1%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 SI L+ N + + + E ++ D + Sbjct: 340 SITMDSVGGDLMNRATRNAVGRRMAVLFIEFRTETENRMVDGEVVTEEKRVVDKGIISLA 399 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 ++ L G + + + +GP + ++ I G++ Sbjct: 400 TVQSALGASFRITGLDSIPEASELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMMS 459 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 V++ + +LIY+ + ++ F L A +L L++ + ++ L +A ++ +G Sbjct: 460 VLLGFVLVLIYMALYYR-GFGLIANVSLTLNLMLLIACMSILSATLTLPGIAGIVLTVGM 518 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 +V+ V++++R+R+ +K + + I+ + ++ + L + G Sbjct: 519 AVDANVLIFERIREELKA---GTAPQLAINAGYSRAFVSIFDANITTLLVALILFAMGSG 575 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + FAI ++ GI+ + S + ++ I+ +Y R Sbjct: 576 PVKGFAITLSLGIMTSMFSGLLVSRSIVNVVYGGRR 611 Score = 51.2 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 53/526 (10%), Positives = 130/526 (24%), Gaps = 38/526 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ + IG + ALPN P + Sbjct: 4 KYPLWKNLIILVALAIGFIYALPNLFPDDFA---------------------VQVTGARS 42 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 + L+ L S + S++ I ++ + V L Sbjct: 43 STEVDARVLERAVQALESQ--GIEVKSSSLQDRDALIRVT--SGEDQLQARPAVQAILGN 98 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174 LN+ + + + + + A+ Q ME + +I + Sbjct: 99 DYLVALNMAASTPGWLRSLGAGPMKLGLDLRGGVHFLLEVDMETAVSQRMEALSGQIKRE 158 Query: 175 GISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232 E R I L D SR + + + + Sbjct: 159 LREERIRYRGGELEGDREIILSFRDDESRAEAFTLIRRQYLQFLMDERTRGDERLIALTL 218 Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 + + ++ I + + Sbjct: 219 SDAEVRSIQEYSLEQNLTTIRNRVNELGVAEPLVQRQGSSRIIVELPGVQDTAQAKRVLG 278 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL----AAMLRAGSLPIKLNIVE 348 A + +I + + + T L + A + + Sbjct: 279 ATANLEFRMEARPDTPAGSIEAFGFRDTPERTARLERELIATGNNVANAQQQFDENGQPQ 338 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 +G D + + T V + ++ + +V + + + L Sbjct: 339 VSITMDSVGGDLMNRATRNAVGRRMAVLFIEFRTETENRMVDGEVVTEEKRVVDKGIISL 398 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 + + + G+ +++ L +G S I + Sbjct: 399 ATVQSALGASFRITGLDSIPEASELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMM 458 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 + L+ V++ + RGF + +S+ +++ I+ + + + Sbjct: 459 SVLLGFVLVLIYMALYYRGFGLIANVSLTLNLMLLIACMSILSATL 504 >gi|322513988|ref|ZP_08067063.1| protein-export membrane protein SecD [Actinobacillus ureae ATCC 25976] gi|322120214|gb|EFX92172.1| protein-export membrane protein SecD [Actinobacillus ureae ATCC 25976] Length = 604 Score = 204 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 166/523 (31%), Positives = 278/523 (53%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ PS + + + GLDLRGG ++EVD + + + D LRS L+KE + Sbjct: 93 NLAPATPSWLTDIGGSPMKRGLDLRGGVRFLMEVDMNTALTKQQESLQDSLRSELRKEKL 152 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N + FAD+ E A V + + +S Sbjct: 153 QYKAVKKGENFATVIEFADADTAEKAARFVRRQHTSLEASF-----------IDTTTVSF 201 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 202 APSAEGLSASRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V S + G+ DG ++ K + G H+ + Sbjct: 262 LGATATLEFRLVNAKASPESAARGIVPADSELKFSRDGGAVVLRRKPSLGGEHIID-ATS 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G E+T+ +GKP+A + Sbjct: 321 GKDERGLPQVSINLDAEGGHMMAEITKSAVGKPMATLYSEFKDSGRKDAKGKVILEKHEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 381 VINVATINSRLGSQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L + F ++ Y +GL A ++ +N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKVFGLFAAAALTVNMVLTIGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +SV ++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSVQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ ++ K Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603 Score = 147 bits (369), Expect = 9e-33, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ + I + + I +K F L A L +++ T+G +L G Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKV-FGLFAAAALTVNMVLTIGLMSLIG 487 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I + N + Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSVQQAIHEGYNGAFTSIFDS 544 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ ++ L + G + FAI +A G++++ ++I ++ ++Y + ++ Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602 >gi|74318098|ref|YP_315838.1| preprotein translocase subunit SecF [Thiobacillus denitrificans ATCC 25259] gi|74057593|gb|AAZ98033.1| preprotein translocase protein SecF [Thiobacillus denitrificans ATCC 25259] Length = 310 Score = 204 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 159/299 (53%), Gaps = 3/299 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 L P I FM IS+L + +I L+ GLN G+DF GG + + + Sbjct: 1 MLELFPFKKTIPFMSWGKATTAISLLTFLFAIWALWDKGLNLGVDFTGGTVIEITTSHAA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 +L +R LE + +IS Q F ++ L+RL + + A+T V + + P Sbjct: 61 NLPEIRGALEKTGLPEISVQTFGTSRDVLIRLPNKAHINAAETS--NRVLAAVRTVDPSV 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ + VGP++ +EL G + +++ A ++ Y+ IRF+W FA+ + + DI LG Sbjct: 119 ELRRVDFVGPQVGKELYDSGALALLVVAFGIMAYLAIRFEWRFAVAGMLANLHDIVIILG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 FA F EF LT +A VL ++GYSVN+ VVV+DR+R+N++ + +ID +I T+ Sbjct: 179 VFAFFQWEFTLTVLAGVLAVLGYSVNESVVVFDRIRENIRKM-RGATIPHIIDDAITRTM 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T + I VL M +GG + +FA+ + GI+ SS+ +A+P+LL R Sbjct: 238 SRTIITHGSTQIMVLSMLFFGGEALHNFALALTIGIMFGIYSSVLVASPLLLMFGVKRE 296 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 92/205 (44%), Gaps = 5/205 (2%) Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 + + ++ + + VG +G + G A++ I+ ++ Sbjct: 94 NKAHINAAETSNRVLAAVRTVDPSVELRRVDFVGPQVGKELYDSGALALLVVAFGIMAYL 153 Query: 380 IVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438 + + ++ + + ++++ L + + TL +AG++ +G +V+ +++V +RI Sbjct: 154 AIRFEWRFAVAGMLANLHDIVIILGVFAFFQWEFTLTVLAGVLAVLGYSVNESVVVFDRI 213 Query: 439 REE--NRKNQSVFCSLDMGFSRAYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495 RE + ++ +D +R S TI T ++ +LFF GG A+ FA+ + + Sbjct: 214 RENIRKMRGATIPHIIDDAITRTMSRTIITHGSTQIMVLSMLFF-GGEALHNFALALTIG 272 Query: 496 ILISMFTAISIVRAMMIFIIRYKKM 520 I+ +++++ + +++ ++ Sbjct: 273 IMFGIYSSVLVASPLLLMFGVKREH 297 >gi|226946084|ref|YP_002801157.1| preprotein translocase subunit SecD [Azotobacter vinelandii DJ] gi|226721011|gb|ACO80182.1| SecD membrane export protein [Azotobacter vinelandii DJ] Length = 622 Score = 204 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 163/526 (30%), Positives = 272/526 (51%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + N + LGLDL GG H +LEVD D ++ L++Y E++S L+KE Sbjct: 107 NLAPTTPGWLRALGANPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGEVKSLLRKERQ 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q I L FADS E + + + + + + Sbjct: 167 RYRSLPQQDGAIQLGFADSGQLEQAQASIRKNFSDFDLSAGERNGQPV--------LRLT 218 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+ + ++ ++I Q++ +R R++++G+SE +QR G++RI+++LPG QD + +++L Sbjct: 219 LTAAKLAEIREYSIRQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 278 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F ++ + R+ +E + I+G + A A++D Sbjct: 279 GKTASLEFRMAAESD-ASRAITETFEFREGGRPPVALERSLIITGDQVTDAQASYDENG- 336 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+I D G TR+++G+ +AV+ + + Sbjct: 337 RPQVNIRLDGHGGELMNRATRNSVGRAMAVLFIEQKPVTRYVKQTIDGVEKEVAVETFRE 396 Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ + +I+G + LA +LRAG L + EER +G LG++ Sbjct: 397 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTLGPSLGAE 456 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I G A + G + + LFM+++Y +GL+A ++ N++L +AL+SLLGATLTLP IAG Sbjct: 457 NIQLGIQASLWGFLFVTLFMLLIYKFFGLLAAVALAFNMVLLVALMSLLGATLTLPGIAG 516 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE SV ++ GF RA+S I D N+T L+ +LF Sbjct: 517 IVLTMGMAVDANVLIFSRIREEIANGLSVQRAIHEGFDRAFSAILDGNLTTLLVGGILFA 576 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I+ S+FTAI + R M+ I + +K + I Sbjct: 577 MGTGPVKGFAVTMSLGIVTSLFTAIIVTRGMVNLIYGGRDLKKLWI 622 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 92/250 (36%), Gaps = 4/250 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V + + + ++ L G + + + Sbjct: 374 VTRYVKQTIDGVEKEVAVETFREEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + E I+ GI + + + +++ + +K+ F L A L Sbjct: 434 AGGLAAPMYFAEERTLGPSLGAENIQLGIQASLWGFLFVTLFMLLIYKF-FGLLAAVALA 492 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ + +L G L +A ++ +G +V+ V+++ R+R+ + +S + I Sbjct: 493 FNMVLLVALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGLSVQRAI 549 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + + + ++ + + G + FA+ M+ GIV + ++I + ++ Sbjct: 550 HEGFDRAFSAILDGNLTTLLVGGILFAMGTGPVKGFAVTMSLGIVTSLFTAIIVTRGMVN 609 Query: 822 FIYDWRAKNA 831 IY R Sbjct: 610 LIYGGRDLKK 619 Score = 45.5 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLR 51 + W +L + +G++ + PN P + A +I G DL Sbjct: 4 KYPLWKYLLILAVLLVGIVYSAPNLFPDDPAIQISGASAARQIGQG-DLE 52 >gi|194437589|ref|ZP_03069685.1| acriflavine resistance protein D [Escherichia coli 101-1] gi|194423395|gb|EDX39386.1| acriflavine resistance protein D [Escherichia coli 101-1] Length = 1037 Score = 204 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQPLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|254497604|ref|ZP_05110390.1| hypothetical protein LDG_2014 [Legionella drancourtii LLAP12] gi|254353173|gb|EET11922.1| hypothetical protein LDG_2014 [Legionella drancourtii LLAP12] Length = 618 Score = 204 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 172/525 (32%), Positives = 281/525 (53%), Gaps = 38/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + GLDLRGG H +LEVD D ++ + + L++ G+ Sbjct: 103 NLAPSTPGWLRAIRAEPMKQGLDLRGGVHFLLEVDVDSVISRRYEGIMKNIGQSLREIGV 162 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +R + +K + L F D + E + + V + + + EI Sbjct: 163 RYSGIRYVADKGVNLRFRDPQSMERALAGLREKMPDVL----------FVKSKADNEIVG 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + ++ + + IEQ+M I+R R++++G+ E+ +Q+ G+ R+ + LPG QD +R +Q+ Sbjct: 213 SIPPAELNTMRQNTIEQTMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQI 272 Query: 206 LGTTAKMSFHKVLPNNSKK-GFMFGVRFLRD----SDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F+ V +N + G + D DG+ L++ +V +SG + A ++ Sbjct: 273 LGGTATLQFYLVDQDNDPQIAKQTGSVPVSDKLYMMDGHPILLKRQVVLSGDSITSAVSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGR 301 FD +T P V I G F +VTR+NIGK + V Sbjct: 333 FDQQTATPAVQIQLGGGGESLFTKVTRENIGKRMAIVYVETKNAIQTINGVDTRVTHKEE 392 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + Q QI+G + A LA +LRAG+LP + +EER VG LG ++I Sbjct: 393 RVISAPVIQNALGNNFQITGLTDSKEASNLALLLRAGALPAAIYPIEERTVGPTLGKENI 452 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 +G ++ G+ LI++ M+V Y +GL+AD ++ LN++L ALLS++ ATLTLP IAGIV Sbjct: 453 RRGIVSLEVGMGLILILMLVYYRVFGLIADIALMLNLVLLCALLSVIDATLTLPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R S ++ G+ RA+STI D+N+T LI ++LF G Sbjct: 513 LTVGMAVDANVLIYERIREELRHGLSPQAAIYAGYERAFSTILDANVTTLIVAIILFAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 G VRGFA+T+ L +L SM T I+ RA++ + + +K + I Sbjct: 573 TGPVRGFAVTLSLGLLTSMLTGITFTRAIVNWYYGGRTVKKLSIG 617 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 97/251 (38%), Gaps = 4/251 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 G V + + + + + +N L G + ++ Sbjct: 363 GKRMAIVYVETKNAIQTINGVDTRVTHKEERVISAPVIQNALGNNFQITGLTDSKEASNL 422 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + VGP + +E IR+GIV + + +LI + + ++ F L A Sbjct: 423 ALLLRAGALPAAIYPIEERTVGPTLGKENIRRGIVSLEVGMGLILILMLVYYRV-FGLIA 481 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 L+L++ ++ L +A ++ +G +V+ V++Y+R+R+ ++ +S Sbjct: 482 DIALMLNLVLLCALLSVIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELR---HGLS 538 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 + I + ++ I + + G + FA+ ++ G++ + + I Sbjct: 539 PQAAIYAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVTLSLGLLTSMLTGITFT 598 Query: 817 APILLFIYDWR 827 I+ + Y R Sbjct: 599 RAIVNWYYGGR 609 Score = 43.9 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 28/150 (18%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ +I IG + A+PN ++ V+++ Sbjct: 4 KYPLWKNLMLVVIAIIGFIYAIPNLYTENP-------------------------VVQIS 38 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 + V+ ++ L+K+ + S+ + + FA + + D + L Sbjct: 39 AETPVD--YDELKTQVEGILQKDKLSYKSVSAQNEGVEIIFASTDSQLLARDAIKNALGN 96 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 LN+ P + E Sbjct: 97 QYTVALNLAPSTPGWLRAIRAEPMKQGLDL 126 >gi|260770691|ref|ZP_05879621.1| inner membrane efflux transporter of RND family multidrug efflux pump [Vibrio furnissii CIP 102972] gi|260614272|gb|EEX39461.1| inner membrane efflux transporter of RND family multidrug efflux pump [Vibrio furnissii CIP 102972] Length = 1042 Score = 204 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 67/690 (9%), Positives = 182/690 (26%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L + + ++P P + L Sbjct: 8 RPIFAWVIAIIIMLAGVLSIM-----TLPVSQYPDIAPPA-------------VSLSGSY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S ITL+F + +V Sbjct: 50 PGASAETVENSVTQTIEQNMNGIDNLLYMSATSDSAGNFSITLTFESGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L + L + + + +++ + E + ++ Q D + Sbjct: 110 KLSLAEATLPTEVTQQGITVAKSSSSFLMVVGFISNDGSMDNTEIADFMVSQVKDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP++L T A++ N G + Sbjct: 170 QGVGEVQVFGAQ-HAMRIWLDPNKLNNFQLTPAQVKTAISAQNTQVSVGQLGATPALEGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + + + Sbjct: 229 QLNATITAQSRFT-------------TVKQFENILLKVDTDGAQIRLKDVARVELGAEDY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + A L+ + Sbjct: 276 QAVALYNGKYASGIAVKLATGANALETADAVKARLAELQPTFPSNIEVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +++ G ++ ++ Sbjct: 336 SIEEVVHTLMEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + S + + + + + Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQITGALVGIAMVLSAVFIP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFG G R F++T+ S+++S+ A+ + A+ + ++ + Sbjct: 456 MAFFGGAAGAIYRQFSLTIVSSMVLSVLVAMILTPALCATLLKPIKKGEAHHVKRGPLAW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + ++ + + + +G Sbjct: 516 FNTWFDRGTESYQNTVNRGVNHRVRYMLAYIVIVGVLATLWTRLPTSFVPEEDQGIFLSI 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + ++ + E F V G +K Sbjct: 576 VQLPVGATQEQTLEVMGKVRKHFQEDEKDAVESVFTVAGFSFAGQGQNMGMAFVRLKDWS 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 P ++ + I Sbjct: 636 ERTDPALSVDAVVGRSYPAFAPIKEAQIFS 665 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 80/204 (39%), Gaps = 6/204 (2%) Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 ++ ++ P + + I + + ++ + + + + +++ + Sbjct: 301 ETADAVKARLAELQPTFPSNIEVVYPYDTTPFVKISIEEVVHTLMEAIVLVFLVMYLFLQ 360 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + L + + + T G A FG N + ++ IG V+D +VV + + Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ER 418 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805 + +S R+ KS+ + G V +M +PMA +G G++ F++ + + Sbjct: 419 VMSEEGLSPREATRKSMGQITGALVGIAMVLSAVFIPMAFFGGAAGAIYRQFSLTIVSSM 478 Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829 V++ ++ + + + K Sbjct: 479 VLSVLVAMILTPALCATLLKPIKK 502 Score = 55.5 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 77/230 (33%), Gaps = 8/230 (3%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + ++ +F + E+ V G + + ++ + + L Sbjct: 791 ANADGDMVPFDAFATTKWTFGSPRLERFNGVPAVNIQGSAAPGKSTGDAMQAILDIVKQL 850 Query: 649 STIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706 E G + +S + + + + ++ W I + L + Sbjct: 851 PEGIGLEWTGASYQEVQTGSQAPFLYALSILIVFLSLAALYESWSVPFSIILVVPLGVFG 910 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 + + + ++ +LT IG S + +++ + + LY + ++ Sbjct: 911 AIAAATMKSLSNDIYFQVGLLTTIGLSAKNAILIVEFAKD---LYDDGMDLVHATVEACR 967 Query: 767 ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 L + TS A + VLP+A+ G + + + G++ A +I Sbjct: 968 MRLRPIMMTSFAFILGVLPLALSTGAGAASRNAIGWGVVGGMLAATILAI 1017 >gi|82776659|ref|YP_403008.1| putative multidrug-efflux transport protein [Shigella dysenteriae Sd197] gi|309789028|ref|ZP_07683623.1| acrB protein [Shigella dysenteriae 1617] gi|81240807|gb|ABB61517.1| putative multidrug-efflux transport protein [Shigella dysenteriae Sd197] gi|308923299|gb|EFP68811.1| acrB protein [Shigella dysenteriae 1617] Length = 1033 Score = 204 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L + + I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTRSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDLLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592 Q R + + + L L ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 42.0 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYD 825 + + Sbjct: 1020 FVLVKR 1025 >gi|108763901|ref|YP_632856.1| protein-export membrane protein SecF [Myxococcus xanthus DK 1622] gi|108467781|gb|ABF92966.1| protein-export membrane protein SecF [Myxococcus xanthus DK 1622] Length = 392 Score = 204 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 149/258 (57%), Gaps = 5/258 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 + A +P+D V+ +ES I + GE YQ S RV Sbjct: 125 PNGIIRFRAAQPMDSDAVKKAVESAGI-GVQEVRDLGEAQGGTGYDYQVVASGMADRVFA 183 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + P + + VGP++ ++L +GI+ ++ S +A+LIY+ RF + F GA Sbjct: 184 ALNAGLEK--PDFEQRRVDYVGPQVGKQLRNRGIMALLYSMVAILIYVAFRFDFKFGPGA 241 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 + +++ D+ G++ + EFNLTA+AA+LT++GYSVND +V+YDR+R++M Y Sbjct: 242 LLSMVHDVIMVAGYYLVSRREFNLTAIAALLTVVGYSVNDTIVIYDRIREDMAKY-KGKP 300 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 F ++I+ +IN+TLGR++ TS +S++ + ++G I FA+ M GIVV S+I+IA Sbjct: 301 FAEVINIAINDTLGRTILTSGTTALSLIGLLIFGVGEIFDFAMAMLVGIVVGVYSTIYIA 360 Query: 817 APILLFIYDW-RAKNARI 833 +P+ +++ + AK+AR+ Sbjct: 361 SPLTIWLDERAAAKDARL 378 >gi|300903475|ref|ZP_07121400.1| putative ATP synthase F0, A subunit [Escherichia coli MS 84-1] gi|301302817|ref|ZP_07208945.1| putative ATP synthase F0, A subunit [Escherichia coli MS 124-1] gi|300404507|gb|EFJ88045.1| putative ATP synthase F0, A subunit [Escherichia coli MS 84-1] gi|300841752|gb|EFK69512.1| putative ATP synthase F0, A subunit [Escherichia coli MS 124-1] gi|315256481|gb|EFU36449.1| putative ATP synthase F0, A subunit [Escherichia coli MS 85-1] Length = 1037 Score = 204 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVTAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.3 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVTAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|257452887|ref|ZP_05618186.1| protein translocase subunit secF [Fusobacterium sp. 3_1_5R] gi|257466748|ref|ZP_05631059.1| protein translocase subunit secF [Fusobacterium gonidiaformans ATCC 25563] gi|315917897|ref|ZP_07914137.1| translocase subunit secF [Fusobacterium gonidiaformans ATCC 25563] gi|317059429|ref|ZP_07923914.1| translocase subunit secF [Fusobacterium sp. 3_1_5R] gi|313685105|gb|EFS21940.1| translocase subunit secF [Fusobacterium sp. 3_1_5R] gi|313691772|gb|EFS28607.1| translocase subunit secF [Fusobacterium gonidiaformans ATCC 25563] Length = 313 Score = 204 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 82/274 (29%), Positives = 145/274 (52%), Gaps = 3/274 (1%) Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 + I S+ + FT GLNYGIDF GG L + + L + +L+++Q N Sbjct: 17 LTMVILSLGVFFTKGLNYGIDFSGGNLLQIKYENKITLHDINESLDNIQGIPQIGTNSRK 76 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 + +++ E++ + V I + VG + EL I + Sbjct: 77 VQISEDNTVIIRTQEISEDEKKEILNAL--QSVGAYQIDKEDKVGASVGEELKTSAIYAL 134 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 I A+ ++IYI RF++ FA+GAI L+ D+ LG +L E N +AA+LT++GYS Sbjct: 135 GIGAVLIIIYITFRFEFIFAVGAIVALLHDLILALGCISLLYYEINTPFIAAILTILGYS 194 Query: 734 VNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 +ND +VV+DR+R+N+ + T +S + + KS+N+ + RS+ TS+ +++ + + GG Sbjct: 195 INDTIVVFDRIRENLKRRAKTQMSIEECLAKSVNQVMIRSINTSVTTLFAIVAILLLGGD 254 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + +F + + GI+ SS+FIA P++ F++ Sbjct: 255 SLRTFIVTLLVGILAGTYSSVFIATPVVYFLHKK 288 >gi|315178553|gb|ADT85467.1| AcrB protein [Vibrio furnissii NCTC 11218] Length = 1042 Score = 204 bits (517), Expect = 8e-50, Method: Composition-based stats. Identities = 63/602 (10%), Positives = 169/602 (28%), Gaps = 41/602 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L + + ++P P + L Sbjct: 8 RPIFAWVIAIIIMLAGVLSIM-----TLPVSQYPDIAPPA-------------VSLSGSY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S ITL+F + +V Sbjct: 50 PGASAETVENSVTQTIEQNMNGIDNLLYMSATSDSAGNFSITLTFESGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L + L + + + +++ + E + ++ Q D + Sbjct: 110 KLSLAEATLPTEVTQQGITVAKSSSSFLMVVGFISNDGSMDNTEIADFMVSQVKDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP++L T A++ N G + Sbjct: 170 QGVGEVQVFGAQ-HAMRIWLDPNKLNNFQLTPAQVKTAISAQNTQVSVGQLGATPALEGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + + + Sbjct: 229 QLNATITAQSRFT-------------TVKQFENILLKVDTDGAQIRLKDVARVELGAEDY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + A L+ + Sbjct: 276 QAVALYNGKYASGIAVKLATGANALETADAVKARLAELQPTFPSNIEVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +++ G ++ ++ Sbjct: 336 SIEEVVHTLMEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + S + + + + + Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQITGALVGIAMVLSAVFIP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFG G R F++T+ S+++S+ A+ + A+ +++ K Sbjct: 456 MAFFGGAAGAIYRQFSLTIVSSMVLSVLVAMILTPALCATLLKPIKKGEAHHVKRGPLAW 515 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + + + G+ + + ++ + LS+ Sbjct: 516 FNTWFDRGTESYQNTVNRGVNHRVRYMLAYIVIIGVLATLWTRLPTSFVPEEDQGIFLSI 575 Query: 594 VR 595 V+ Sbjct: 576 VQ 577 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 80/204 (39%), Gaps = 6/204 (2%) Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 ++ ++ P + + I + + ++ + + + + +++ + Sbjct: 301 ETADAVKARLAELQPTFPSNIEVVYPYDTTPFVKISIEEVVHTLMEAIVLVFLVMYLFLQ 360 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + L + + + T G A FG N + ++ IG V+D +VV + + Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ER 418 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805 + +S R+ KS+ + G V +M +PMA +G G++ F++ + + Sbjct: 419 VMSEEGLSPREATRKSMGQITGALVGIAMVLSAVFIPMAFFGGAAGAIYRQFSLTIVSSM 478 Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829 V++ ++ + + + K Sbjct: 479 VLSVLVAMILTPALCATLLKPIKK 502 Score = 55.9 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 78/230 (33%), Gaps = 8/230 (3%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + ++ + +F + E+ V G + + ++ + + L Sbjct: 791 ANADGDMVPFDAFATTEWTFGSPRLERFNGVPAVNIQGSAAPGKSTGDAMQAILDIVKQL 850 Query: 649 STIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706 E G + +S + + + + ++ W I + L + Sbjct: 851 PEGIGLEWTGASYQEVQTGSQAPFLYALSILIVFLSLAALYESWSVPFSIILVVPLGVFG 910 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 + + + ++ +LT IG S + +++ + + LY + ++ Sbjct: 911 AIAAATMKSLSNDIYFQVGLLTTIGLSAKNAILIVEFAKD---LYDDGMDLVHATVEACR 967 Query: 767 ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 L + TS A + VLP+A+ G + + + G++ A +I Sbjct: 968 MRLRPIMMTSFAFILGVLPLALSTGAGAASRNAIGWGVVGGMLAATILAI 1017 >gi|239818076|ref|YP_002946986.1| preprotein translocase subunit SecF [Variovorax paradoxus S110] gi|239804653|gb|ACS21720.1| protein-export membrane protein SecF [Variovorax paradoxus S110] Length = 319 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 156/302 (51%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR +S + ++ L GL+ ++F GG + V + D Sbjct: 1 MEFFRIHKTIPFMRHALVLNIVSFVTFALAVFFLLHRGLHLSVEFTGGTVMEVAYQQSAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR + L D+ Q++ ++ +RL Q G S Q V + + + P +T Sbjct: 61 IGKVREAIGKLGYPDVQVQSYGTSRDVQIRLPAQKGMSSDQQS--AQVMQALKSVDPSAT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + E+VGP++ EL G+ + + + ++IY+ IRF+W FAL + + D+ LGF Sbjct: 119 QRGIEVVGPQVGEELTTNGLKALGMVVVGIMIYLAIRFEWKFALATVLANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AAVL ++GYSVN+ VV++DR+R+N + Y ++ ++ID +I T+ Sbjct: 179 FAFFQWEFSLAVLAAVLAVLGYSVNESVVIFDRVRENFRRYRK-MNTVEIIDNAITSTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI SS F+AA I +++ R Sbjct: 238 RTIITHGSTQLVVLSMFFFGGPTLHYFALALTIGICFGIYSSCFVAAAIAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|163746862|ref|ZP_02154219.1| SecF protein [Oceanibulbus indolifex HEL-45] gi|161379976|gb|EDQ04388.1| SecF protein [Oceanibulbus indolifex HEL-45] Length = 322 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 174/305 (57%), Gaps = 7/305 (2%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 R L+PD F G S++ I S+ GLN+GIDF+GG L A Sbjct: 1 MRLKLVPDNTNFDFFGYAKITFGASVVAMILSLIAWGVMGLNFGIDFRGGTTLRTEATEA 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKKKI 642 VD+ R L L++GD++ ++R+Q Q G A T ++ ++ + Sbjct: 61 VDVGAYRDALSVLELGDVTISEVFDPGFRDDQHVAMIRVQAQEGQEAATTDTIQTIQTAL 120 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 E+ P + E VGPK+S ELI+ + V + A+LIYIW+RF+W F++GA+ L Sbjct: 121 QEVSPDIKFTSVESVGPKVSGELIQTAFLAVGGALAAILIYIWLRFEWQFSVGAVVALFH 180 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 D+ T+G F+L I F+L VAA+LT+IGYS+ND VV++DR+R+N++ Y R++++ Sbjct: 181 DVVLTIGLFSLLQIRFDLPVVAAILTIIGYSINDTVVIFDRLRENLRKYKKR-PLREVMN 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 S+NETL R++ TS ++++ + + GG VI +F + +G++V SS+++A ++LF Sbjct: 240 LSVNETLSRTLMTSGTTLLALIALLILGGDVIRAFVFAITWGVIVGTYSSVYVAKNVVLF 299 Query: 823 IYDWR 827 + R Sbjct: 300 LGVKR 304 >gi|283954657|ref|ZP_06372175.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 414] gi|283793849|gb|EFC32600.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni 414] Length = 323 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 156/285 (54%), Gaps = 3/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FMR RF + +S + SI LL+ GL YGIDF GG + + ++ +R LE Sbjct: 10 YDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLIQLKYENAAPIAQIREILE 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 G + G + + + + + ++ ++VGP Sbjct: 70 KQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEYISTLLKDTGKFEVRRADVVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ + IS IA+LIYI +RF+W FAL AI + I D+ TLG +LF I+ N Sbjct: 128 KVGDELRNKGLMAIAISLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AAVLT++GYS+ND ++++DR+R+ +K + +I++S++ TL R+V TS Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKSELAPIINESVSATLSRTVLTSGLT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +V+ + +GG +I F++ + GI++ SSIF+A+P LL+ Sbjct: 247 LATVVILYFFGGEMIQGFSLTLIVGIIIGTLSSIFVASPTLLWFK 291 >gi|237654067|ref|YP_002890381.1| preprotein translocase subunit SecF [Thauera sp. MZ1T] gi|237625314|gb|ACR02004.1| protein-export membrane protein SecF [Thauera sp. MZ1T] Length = 310 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 155/302 (51%), Gaps = 2/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS+L ++ L T GL+ ++F GG + V + Sbjct: 1 MEFFRIKKDIPFMRHALVFNVISLLTFALAVFFLLTRGLHLSVEFTGGTLVEVSYAQAPQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R L D QNF ++ L+RL + D ++ P Sbjct: 61 LEPIREALAGSGYPDAQVQNFGSARDLLIRLPNRE-DLDTSRVSETVMNTLQQVGGPAPE 119 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL G + +++ + ++IY+ +RF+W FA+ AI + D+ LGF Sbjct: 120 LRRVEFVGPQVGKELAADGSMALLLVIVGIMIYLALRFEWRFAVSAIIANLHDVIIILGF 179 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AAVL ++GYSVN+ VVV+DR+R+ K +++ ++D +I T+ Sbjct: 180 FAFFQWEFSLPVLAAVLAVLGYSVNESVVVFDRVRETFKK-KRNMTTPQVLDHAITSTIS 238 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R+V T + + VL M V+GG + F++ + GI SS+ +A+P+++++ R + Sbjct: 239 RTVITHGSTQVMVLSMLVFGGETLYYFSLALTIGICFGIYSSVLVASPLVMWLGVSREQF 298 Query: 831 AR 832 + Sbjct: 299 IK 300 >gi|188496215|ref|ZP_03003485.1| acriflavine resistance protein D [Escherichia coli 53638] gi|188491414|gb|EDU66517.1| acriflavine resistance protein D [Escherichia coli 53638] Length = 1037 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|157158507|ref|YP_001463792.1| aminoglycoside/multidrug efflux system [Escherichia coli E24377A] gi|157080537|gb|ABV20245.1| acriflavine resistance protein D [Escherichia coli E24377A] Length = 1037 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLSIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|312967758|ref|ZP_07781973.1| inner membrane protein [Escherichia coli 2362-75] gi|312287955|gb|EFR15860.1| inner membrane protein [Escherichia coli 2362-75] Length = 1037 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVPQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|301022364|ref|ZP_07186254.1| putative ATP synthase F0, A subunit [Escherichia coli MS 69-1] gi|300397559|gb|EFJ81097.1| putative ATP synthase F0, A subunit [Escherichia coli MS 69-1] Length = 1037 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 64/186 (34%), Gaps = 8/186 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E L + IS + + + + ++ W + + L + L Sbjct: 853 FGLEWTEMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALL 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + + + + + L Sbjct: 913 ATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNQKGHDLFEATLHACRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA G + + G++ A +I+ + + Sbjct: 970 RPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRR 1029 Query: 827 RAKNAR 832 R Sbjct: 1030 FPLKPR 1035 >gi|33152765|ref|NP_874118.1| preprotein translocase subunit SecD [Haemophilus ducreyi 35000HP] gi|33148989|gb|AAP96507.1| Protein-export membrane protein SecD [Haemophilus ducreyi 35000HP] Length = 614 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 160/523 (30%), Positives = 286/523 (54%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + GLDLRGG ++EVD + + + D LR+ L+KE + Sbjct: 104 NLAPATPVWLSNIGGSPMKRGLDLRGGVRFLMEVDMNTALVKQQETLQDSLRTELRKEKL 163 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ N + FA++ E A + + +K T E++ Sbjct: 164 QYKAIKKGDNFTTQIEFANNDIAEKAARFIKRNHAYLETKF-----------ITASEVAF 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S+ + + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 213 TPSETALAKSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + + G+ DG ++ K + G H+ + Sbjct: 273 LGATATLEFRLVNAEANVESATRGIVPADSELKHTRDGRAVVLRRKPSLGGEHIVD-ATS 331 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I G ++T+ +G+P+A + Sbjct: 332 GKDERGLPQVSIHLYAKGGNMMADITKSAVGRPMATLYSEFKDSGRKDANGKVILEKHEE 391 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 392 VINVATINSRLGSQFQITGIDSTAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 KG A + GL+L ++F ++ Y +G+ A ++ +N++LT+ L+SL+GATLT+P IAGI+L Sbjct: 452 KGMEAGIYGLILTIVFCLIYYKVFGIFATAALLVNMVLTIGLMSLIGATLTMPGIAGIIL 511 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R +S+ +++ G++ A+++IFDSN+T ++ ++VL+ G Sbjct: 512 AVGMSVDANVLIYERIKEELRNGRSIQQAINEGYNGAFTSIFDSNLTTILTSLVLYSVGT 571 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFAIT+ L ++ISMFTAI+ R ++ +I K++K + I Sbjct: 572 GPVKGFAITLALGVMISMFTAITGTRMLVNWIYGGKRVKKLWI 614 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 85/176 (48%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + KG+ I I +++ I +K F + A L++++ T+G +L G Sbjct: 440 TIGASLGADNVAKGMEAGIYGLILTIVFCLIYYKV-FGIFATAALLVNMVLTIGLMSLIG 498 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ S + I++ N + Sbjct: 499 ATLTMPGIAGIILAVGMSVDANVLIYERIKEELR---NGRSIQQAINEGYNGAFTSIFDS 555 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ L + G + FAI +A G++++ ++I ++ +IY + Sbjct: 556 NLTTILTSLVLYSVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWIYGGKRVKK 611 Score = 41.2 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 30/133 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + IG L ALPN + + G+ Sbjct: 4 RFPLWKNLMIIFVIIIGGLYALPNLYGEDPSVQI----------------SGTR------ 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF----KENIADKVTL 117 + + L + L I + S I + + KE I++ + Sbjct: 42 GQEASSETLAHVQE----TLSSMNITLKSAVLENGSILVRLTNDEQQLPAKEKISEVLGD 97 Query: 118 FLQGVNSKLNVDP 130 + P Sbjct: 98 KFSVALNLAPATP 110 >gi|332530976|ref|ZP_08406899.1| preprotein translocase subunit SecF [Hylemonella gracilis ATCC 19624] gi|332039587|gb|EGI75990.1| preprotein translocase subunit SecF [Hylemonella gracilis ATCC 19624] Length = 318 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 154/302 (50%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR +S++ + + L T GL+ ++F GG + V + D Sbjct: 1 MEFFKIRRDIPFMRHALVLNAVSLVTFLLAAFFLVTRGLHLSVEFTGGTLMEVSYTQTAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R + L D+ QNF ++ L+RL G S ++ V + +T Sbjct: 61 LEAIRGGIAKLGYTDVQVQNFGTARDVLIRLPAVKGVSSSEQS--AQVLGVLQAADAGAT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ +E VGP++ EL G+ + I ++IY+ +RF+W F + I + D+ LGF Sbjct: 119 LRRSEFVGPQVGDELALDGLKALAFVVIGIVIYLAVRFEWKFGVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AAVL ++GYSVN+ VV++DR+R++ + + + ID +I T+ Sbjct: 179 FAFFQWEFSLPVLAAVLAVLGYSVNESVVIFDRIRESFRRQRK-MDVKATIDHAITSTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M ++GG + FA+ + GI SS+F+AA I +++ R Sbjct: 238 RTIITHGSTQLVVLSMLIFGGPTLHYFAMALTIGICFGIYSSVFVAASIAMWLGVKREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|82777847|ref|YP_404196.1| aminoglycoside/multidrug efflux system [Shigella dysenteriae Sd197] gi|309784802|ref|ZP_07679435.1| acriflavine resistance protein D [Shigella dysenteriae 1617] gi|81241995|gb|ABB62705.1| AcrD [Shigella dysenteriae Sd197] gi|308927172|gb|EFP72646.1| acriflavine resistance protein D [Shigella dysenteriae 1617] Length = 1037 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGGAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L ++ G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSIMLVVPLGVIGALLATSMLGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|85708079|ref|ZP_01039145.1| preprotein translocase subunit [Erythrobacter sp. NAP1] gi|85689613|gb|EAQ29616.1| preprotein translocase subunit [Erythrobacter sp. NAP1] Length = 556 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 177/558 (31%), Positives = 295/558 (52%), Gaps = 40/558 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN-------------------- 42 W I + A+P+ + P+ P + Sbjct: 4 TPLWKKISLWVFTLALAAAAIPSLISSFTSSDEPAPAPADDVTAEAPAFPEVDGEDEEES 63 Query: 43 ---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE--GIGVFSMRQIQNK 97 +I+LGLDL GGSHL+LE + D + L+ + + S L++ I + + Sbjct: 64 SLPQINLGLDLAGGSHLLLEANPADVASQRLENMEEAVESALRQAVPAIEFGDTSRSDGQ 123 Query: 98 ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157 ++ + + + G + ++ L + I + + ++ Sbjct: 124 LSFILDSVADIDRARAVLEPIMMGDGLR-----REWDLSVVDGQRIVLSPTDAGQATALN 178 Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 A+E ++E++R+RID +G E TI R G +RI++Q+PG QDP L++LLG TA++ F V Sbjct: 179 SAMEGAVEVVRRRIDLLGTREPTIIRQGENRIVVQVPGLQDPVALKRLLGETAELEFKLV 238 Query: 218 LPNNSKKGFMFGVR----------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 GV D G V+ I G L A A DP+T++ Sbjct: 239 DQQALPTNTAAGVANPGSQIYPYAPETDFAGQFEAVKRLGGIRGDSLINARAGVDPQTNE 298 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327 VV+I FD+ G ++F +++ +N+G+ A++LDG V++AP N+ I G AQISG FT +T Sbjct: 299 NVVNIQFDQQGGQKFAQLSTENVGERFAIILDGEVISAPFFNEPILGGSAQISGAFTPDT 358 Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387 A LA L++G+LP+ L +VEER VG DLG++SI G A++ G + ++ M+ YG++G Sbjct: 359 ANELAISLQSGALPVPLTVVEERTVGPDLGAESIRSGLIAMLIGSIAVIALMVATYGRFG 418 Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447 + A ++ NV++ L L+++ TLTLP IAG VL +G AVD+N+L+NERIREE ++ + Sbjct: 419 VYATAALVFNVLILLGLMAIGNFTLTLPGIAGFVLTVGAAVDANVLINERIREERKRGRK 478 Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507 V +++ G+ A I+D+N+T IA V+LF+FG G +RGFA+ + + + S+FTA+++ Sbjct: 479 VITAVENGYKEASRAIYDANVTNFIAGVLLFWFGSGPIRGFAVVLVIGLATSVFTALTLT 538 Query: 508 RAMMIFIIRYKKMKSIDI 525 + + + K+ K I I Sbjct: 539 KMWVSGYLAAKRPKDITI 556 Score = 127 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 71/156 (45%), Gaps = 4/156 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + E IR G++ ++I +IA++ + + F + A L+ ++ LG A+ Sbjct: 384 GPDLGAESIRSGLIAMLIGSIAVIALMVATYG-RFGVYATAALVFNVLILLGLMAIGNFT 442 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A + +G +V+ V++ +R+R+ K ++ E ++ Sbjct: 443 LTLPGIAGFVLTVGAAVDANVLINERIREERKRGRK---VITAVENGYKEASRAIYDANV 499 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 FI+ + + +G I FA+ + G+ + +++ Sbjct: 500 TNFIAGVLLFWFGSGPIRGFAVVLVIGLATSVFTAL 535 >gi|191167649|ref|ZP_03029459.1| acriflavine resistance protein D [Escherichia coli B7A] gi|209919942|ref|YP_002294026.1| aminoglycoside/multidrug efflux system [Escherichia coli SE11] gi|293446822|ref|ZP_06663244.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli B088] gi|300820871|ref|ZP_07101021.1| putative ATP synthase F0, A subunit [Escherichia coli MS 119-7] gi|301328988|ref|ZP_07222015.1| putative ATP synthase F0, A subunit [Escherichia coli MS 78-1] gi|307312540|ref|ZP_07592173.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli W] gi|331678450|ref|ZP_08379125.1| multidrug resistance protein [Escherichia coli H591] gi|190902329|gb|EDV62068.1| acriflavine resistance protein D [Escherichia coli B7A] gi|209913201|dbj|BAG78275.1| multidrug resistance protein [Escherichia coli SE11] gi|291323652|gb|EFE63080.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli B088] gi|300526624|gb|EFK47693.1| putative ATP synthase F0, A subunit [Escherichia coli MS 119-7] gi|300844622|gb|EFK72382.1| putative ATP synthase F0, A subunit [Escherichia coli MS 78-1] gi|306907463|gb|EFN37967.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli W] gi|315061785|gb|ADT76112.1| aminoglycoside/multidrug efflux system [Escherichia coli W] gi|323184477|gb|EFZ69852.1| inner membrane protein [Escherichia coli 1357] gi|323377634|gb|ADX49902.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli KO11] gi|331074910|gb|EGI46230.1| multidrug resistance protein [Escherichia coli H591] Length = 1037 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|323170272|gb|EFZ55925.1| inner membrane protein [Escherichia coli LT-68] Length = 1037 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|191172943|ref|ZP_03034478.1| acriflavine resistance protein D [Escherichia coli F11] gi|190906807|gb|EDV66411.1| acriflavine resistance protein D [Escherichia coli F11] gi|324011185|gb|EGB80404.1| putative ATP synthase F0, A subunit [Escherichia coli MS 60-1] Length = 1037 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|146276509|ref|YP_001166668.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides ATCC 17025] gi|145554750|gb|ABP69363.1| protein translocase subunit secF [Rhodobacter sphaeroides ATCC 17025] Length = 324 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 176/312 (56%), Gaps = 7/312 (2%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 R L P+ I F RA G S+ + S+ + T GLN+GIDF+GG + + Sbjct: 1 MAFRLKLCPEKTNINFFRAAPLTFGFSVFLMVASLVVWLTMGLNFGIDFRGGTTIRTEST 60 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKK 640 +PVD+ R+ L+ L++GDIS +VR+ Q + V+ Sbjct: 61 QPVDVGAYRTALQGLELGDISITEVFDPGFREDQHVAMVRIGAQDDTQSITPEQIATVEA 120 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + + P T + E VGPK+S ELI I V + + YIW+RF+W FA+G++ L Sbjct: 121 ALQTVDPTITFPSVESVGPKVSSELIWSAITAVAAACAGIAFYIWLRFEWQFAVGSVAAL 180 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + D+ T+G FALF I F+LT VAA+LT++GYS+ND VVV+DR+R+N+ Y S+ RD+ Sbjct: 181 VHDVLVTIGVFALFQIRFDLTTVAALLTVLGYSINDTVVVFDRLRENLVKY-KSMPLRDV 239 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ++ S+NETL R++ T M I++ + V+GG VI F + FG+V+ SSI++A I+ Sbjct: 240 MNLSVNETLSRTLMTLMTTLIALSALLVFGGDVIRGFVFAITFGVVIGTYSSIYMAKNIV 299 Query: 821 LFIYDWRAKNAR 832 L++ R + Sbjct: 300 LYLGVDRGGPKK 311 >gi|324009166|gb|EGB78385.1| putative ATP synthase F0, A subunit [Escherichia coli MS 57-2] Length = 1037 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 69.3 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLSEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|300817774|ref|ZP_07097989.1| putative ATP synthase F0, A subunit [Escherichia coli MS 107-1] gi|300529762|gb|EFK50824.1| putative ATP synthase F0, A subunit [Escherichia coli MS 107-1] Length = 1037 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATIGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|224826518|ref|ZP_03699619.1| protein-export membrane protein SecF [Lutiella nitroferrum 2002] gi|224601119|gb|EEG07301.1| protein-export membrane protein SecF [Lutiella nitroferrum 2002] Length = 311 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 164/299 (54%), Gaps = 3/299 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ + ++ LF GLN+ ++F GG + V + + Sbjct: 1 MELFRIKRDIPFMSYGRLTTTISLVTFLLAVFFLFAKGLNFSVEFTGGTVMEVQYRQAAN 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ +R +++L+ G+ + Q+ ++ L+RL + G S AQ + E V + P Sbjct: 61 LNDIRDRVDALKFGEATVQSLGTSRDVLIRLPSRQGVSSAQ--LSERVMGTLKAADPAVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP + EL+ G+ VII + +++Y+ +RF+W FA+ AI + D+ LG Sbjct: 119 LRKVEFVGPSVGEELVTHGLTAVIIVCLGIMLYLALRFEWRFAVAAIIANMHDVVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769 FA F EF+LT +A VL ++GYSVN+ VVV+DR+R+N + + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENFRKAAMRNKNVSEIIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T VL M V+GG + FAI + GIV SS+ +A+PI L++ R Sbjct: 239 SRTLITHGCTEAMVLSMLVFGGPALHGFAIALTIGIVFGIYSSVLVASPIALWLGVARE 297 >gi|323941275|gb|EGB37460.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli E482] Length = 1037 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|312973296|ref|ZP_07787468.1| AcrB/AcrD/AcrF family protein [Escherichia coli 1827-70] gi|310331891|gb|EFP99126.1| AcrB/AcrD/AcrF family protein [Escherichia coli 1827-70] Length = 1037 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|309794492|ref|ZP_07688915.1| putative ATP synthase F0, A subunit [Escherichia coli MS 145-7] gi|308121948|gb|EFO59210.1| putative ATP synthase F0, A subunit [Escherichia coli MS 145-7] Length = 1037 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|218705968|ref|YP_002413487.1| aminoglycoside/multidrug efflux system [Escherichia coli UMN026] gi|293405905|ref|ZP_06649897.1| multidrug efflux protein [Escherichia coli FVEC1412] gi|298381653|ref|ZP_06991252.1| multidrug efflux protein [Escherichia coli FVEC1302] gi|300897656|ref|ZP_07116058.1| putative ATP synthase F0, A subunit [Escherichia coli MS 198-1] gi|218433065|emb|CAR13960.1| aminoglycoside/multidrug efflux system [Escherichia coli UMN026] gi|291428113|gb|EFF01140.1| multidrug efflux protein [Escherichia coli FVEC1412] gi|298279095|gb|EFI20609.1| multidrug efflux protein [Escherichia coli FVEC1302] gi|300358605|gb|EFJ74475.1| putative ATP synthase F0, A subunit [Escherichia coli MS 198-1] Length = 1037 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|134093587|ref|YP_001098662.1| preprotein translocase subunit SecF [Herminiimonas arsenicoxydans] Length = 302 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 157/291 (53%), Gaps = 3/291 (1%) Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 MR IS+L + ++ L GL+ I+F GG + + +P ++ VR+ L L Sbjct: 1 MRHALIFNVISVLTFVAAVFFLVHKGLHLSIEFTGGTVMEITYPKPANIEGVRTKLGELG 60 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 D+ Q+F ++ L+RL Q + AQ V E V + +++ E VGP++ Sbjct: 61 YTDMQVQSFGTAQDVLIRLPVQQNVNTAQ--VSERVMTALKAQDETVSLKRVEFVGPQVG 118 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 EL G++ + + I ++IY+ IRF+W +A+ AI + D+ LGFFA F EF+LT Sbjct: 119 EELTHDGLMAMGMLVIGVMIYLAIRFEWKYAVAAIFANLHDVVIILGFFAFFQWEFSLTV 178 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRSVYTSMAAFI 781 +A +L ++GYSVN+ V+V+DR+R+ + ++ D+++ +I T+ R++ T + + Sbjct: 179 LAGILAVLGYSVNESVIVFDRVRETFRDRKHGKMAVADVMNHAITGTISRTLITHGSTQL 238 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 VL M GG + FA+ + GI SS+F+AA + +++ R + Sbjct: 239 MVLSMFFLGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKREDLIK 289 >gi|310821444|ref|YP_003953802.1| rnd multidrug efflux transporter [Stigmatella aurantiaca DW4/3-1] gi|309394516|gb|ADO71975.1| RND multidrug efflux transporter [Stigmatella aurantiaca DW4/3-1] Length = 1047 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 78/617 (12%), Positives = 172/617 (27%), Gaps = 46/617 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + + ++ +GL+ P + ++P P + + Sbjct: 8 RRPVFAAVCSIVLTLVGLIAI-----PTLPISQYPDLAPP-------------QVTVTST 49 Query: 62 EDDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVT 116 ++ L L EG+ S ++IT++F +R E A V Sbjct: 50 YVGASAEVVESAVTIPLEQELNGVEGMRYISSTSANDGTSQITITFEPTRDIEVAAVDVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + +++L + +V ++ + A S D I Sbjct: 110 NRVSRASARLPSQVNQTGIVVNKASSQMLLTLGLSSPDNRYDAKFLSNYADVNLKDAIKR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + DP+ + T + N G + Sbjct: 170 VRGVGEVRIFGERKFSMRLWLDPTSMASRGLTPQDVVRALQEQNLQVAAGQVGQPPSSEE 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q V + + + + R + Sbjct: 230 QPYQMAVRAHGRL-------------IEPEEFGEIVLQRSADGRLVRMKDVGRVELGAEN 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + L P A Sbjct: 277 YGTIMRFNGKTGVGIAIFQLPTANALDVRDGVVKEMDRLAQQFPPGLEYQTGNDTTLAVR 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S + T LV++V+F+ + + L+ ++ ++++ T A + L+G ++ + Sbjct: 337 ASVNEVIHTLIEAIALVILVIFLFLHGWRSVLITALTLPVSLVGTFAFVYLMGFSINTLT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALI 472 + G+ L GL VD I+V E I K S + G A I + I Sbjct: 397 LFGLTLATGLVVDDAIVVIENIERLMAEKGLSPLKAASEGMKEVSGAVVAISIVLVAVFI 456 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM---MIFIIRYKKMKSIDINPLS 529 + G R FA+T+ +S+ +S F A+++ A+ ++ +K + Sbjct: 457 PVALFPGTTGSIYRQFALTIAVSVGLSTFCALTLTPALSARLLRHHHGQKWIFFRKVDEA 516 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLAN 586 + + + ++ + + G + +G + + V Sbjct: 517 LDWTRDVYGRALHGLLKHPIIILAAFLLCIAGTVALFRAAPTGFIPDEDQGYMMITVQGP 576 Query: 587 RPVDLSVVRSNLESLQI 603 + L+ L ++ Sbjct: 577 EGMSLAQTEKVLIEVEN 593 Score = 83.2 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + ++ + ++ + T +T + E+I I + + + + +++ Sbjct: 306 DGVVKEMDRLAQQFPPGLEYQTGNDTTLAVRASVNEVIHTLIEAIALVILVIFLFL---H 362 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W L TL + + T F L G N + + G V+D +VV + + Sbjct: 363 GWRSVLITALTLPVSLVGTFAFVYLMGFSINTLTLFGLTLATGLVVDDAIVVIENI--ER 420 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGI 805 + +S + + E G V S+ +P+A++ G I FA+ +A + Sbjct: 421 LMAEKGLSPLKAASEGMKEVSGAVVAISIVLVAVFIPVALFPGTTGSIYRQFALTIAVSV 480 Query: 806 VVAASSSIFIAAPI 819 ++ ++ + + Sbjct: 481 GLSTFCALTLTPAL 494 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 59/147 (40%), Gaps = 6/147 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + I ++ L IT LG G ++ ++ L+G + + +++ + + + Sbjct: 890 SFSLPFVIILSVPLAITGALGLQMARGFANDVFCQVGLVMLVGLASKNAILIVE-FAEQL 948 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805 + S D + ++ + L + TS+A + V+P+ G + S + G+ Sbjct: 949 RE--KGKSTVDAVVEAASVRLRPILMTSIAFLLGVVPLMTASGAGAASRNSLGTAVFGGM 1006 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 +V+ + + + + R + R Sbjct: 1007 LVSTVVNFVFIPGLYVLMQRLRGEVKR 1033 >gi|168181752|ref|ZP_02616416.1| protein-export membrane protein SecF [Clostridium botulinum Bf] gi|237796518|ref|YP_002864070.1| preprotein translocase subunit SecF [Clostridium botulinum Ba4 str. 657] gi|182675021|gb|EDT86982.1| protein-export membrane protein SecF [Clostridium botulinum Bf] gi|229260816|gb|ACQ51849.1| protein-export membrane protein SecF [Clostridium botulinum Ba4 str. 657] Length = 287 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 146/287 (50%), Gaps = 8/287 (2%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS++ + + L GLNYGIDFKGG + + + V ++ Sbjct: 7 KTKIWFSISLIIILTGMFFLMKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 ++ + N + ++ ++ VK K + + + +GP + +E Sbjct: 67 SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L RK ++ +II+ IAMLIY+ IRF++ F L AI L+ DI T+ +A+F + + + +A Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFKFGLAAILGLVHDILITISIYAIFKLPVSSSFIA 180 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 AVLT++GYS+ND +V++DR+R+N K ++ + SI +T+ RS+ T + +++ Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANISITQTMSRSINTVLTTLFTIV 239 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + V+ I FA P+ GI+ SSIFI++P+ + N Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTELGNK 285 >gi|16130395|ref|NP_416965.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K-12 substr. MG1655] gi|89109275|ref|AP_003055.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K-12 substr. W3110] gi|170019246|ref|YP_001724200.1| aminoglycoside/multidrug efflux system [Escherichia coli ATCC 8739] gi|170082079|ref|YP_001731399.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K-12 substr. DH10B] gi|238901633|ref|YP_002927429.1| aminoglycoside/multidrug efflux system [Escherichia coli BW2952] gi|253772639|ref|YP_003035470.1| aminoglycoside/multidrug efflux system [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162444|ref|YP_003045552.1| aminoglycoside/multidrug efflux system [Escherichia coli B str. REL606] gi|260856562|ref|YP_003230453.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia coli O26:H11 str. 11368] gi|260869157|ref|YP_003235559.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia coli O111:H- str. 11128] gi|291283689|ref|YP_003500507.1| putative aminoglycoside efflux pump [Escherichia coli O55:H7 str. CB9615] gi|300930097|ref|ZP_07145522.1| putative ATP synthase F0, A subunit [Escherichia coli MS 187-1] gi|300951834|ref|ZP_07165645.1| putative ATP synthase F0, A subunit [Escherichia coli MS 116-1] gi|300957182|ref|ZP_07169417.1| putative ATP synthase F0, A subunit [Escherichia coli MS 175-1] gi|2506970|sp|P24177|ACRD_ECOLI RecName: Full=Probable aminoglycoside efflux pump; AltName: Full=Acriflavine resistance protein D gi|1788814|gb|AAC75523.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K-12 substr. MG1655] gi|1799893|dbj|BAA16344.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K12 substr. W3110] gi|169754174|gb|ACA76873.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli ATCC 8739] gi|169889914|gb|ACB03621.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K-12 substr. DH10B] gi|209763784|gb|ACI80204.1| aminoglycoside efflux pump [Escherichia coli] gi|238859979|gb|ACR61977.1| aminoglycoside/multidrug efflux system [Escherichia coli BW2952] gi|242378069|emb|CAQ32840.1| acrD, subunit of AcrAD-TolC multidrug efflux transport system [Escherichia coli BL21(DE3)] gi|253323683|gb|ACT28285.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974345|gb|ACT40016.1| aminoglycoside/multidrug efflux system [Escherichia coli B str. REL606] gi|253978512|gb|ACT44182.1| aminoglycoside/multidrug efflux system [Escherichia coli BL21(DE3)] gi|257755211|dbj|BAI26713.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia coli O26:H11 str. 11368] gi|257765513|dbj|BAI37008.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia coli O111:H- str. 11128] gi|260448452|gb|ACX38874.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli DH1] gi|290763562|gb|ADD57523.1| Probable aminoglycoside efflux pump [Escherichia coli O55:H7 str. CB9615] gi|300316026|gb|EFJ65810.1| putative ATP synthase F0, A subunit [Escherichia coli MS 175-1] gi|300448930|gb|EFK12550.1| putative ATP synthase F0, A subunit [Escherichia coli MS 116-1] gi|300461987|gb|EFK25480.1| putative ATP synthase F0, A subunit [Escherichia coli MS 187-1] gi|309702749|emb|CBJ02078.1| putative multidrug efflux pump [Escherichia coli ETEC H10407] gi|315137092|dbj|BAJ44251.1| putative aminoglycoside efflux pump [Escherichia coli DH1] gi|320657146|gb|EFX24955.1| aminoglycoside/multidrug efflux system [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662905|gb|EFX30233.1| aminoglycoside/multidrug efflux system [Escherichia coli O55:H7 str. USDA 5905] gi|323156069|gb|EFZ42228.1| inner membrane protein [Escherichia coli EPECa14] gi|323177413|gb|EFZ63001.1| inner membrane protein [Escherichia coli 1180] gi|323936361|gb|EGB32651.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli E1520] gi|323961262|gb|EGB56874.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H489] gi|323971011|gb|EGB66260.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli TA007] gi|332344288|gb|AEE57622.1| inner membrane protein BpeB [Escherichia coli UMNK88] Length = 1037 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|323967913|gb|EGB63325.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli M863] gi|323977353|gb|EGB72439.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli TW10509] gi|327252119|gb|EGE63791.1| inner membrane protein [Escherichia coli STEC_7v] Length = 1037 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKEFNKIKEARVIA 664 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 70.1 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L L G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWLRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|238756081|ref|ZP_04617403.1| Acriflavine resistance protein B [Yersinia ruckeri ATCC 29473] gi|238705687|gb|EEP98082.1| Acriflavine resistance protein B [Yersinia ruckeri ATCC 29473] Length = 1058 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 69/551 (12%), Positives = 157/551 (28%), Gaps = 46/551 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + + Sbjct: 20 RPIFAWVLAIILCLTGTLAIF-----SLPIEQYPNLAPP-------------NVRISANY 61 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S +TL+F +V Sbjct: 62 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNTGSASVTLTFQAGTNPNEAMQQVQN 121 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + ++++ + + + D + Sbjct: 122 QLQSAIKKLPQDVQQQGVSVSKSGDSTLMMLAFVSTDGSMDKQDIADYVASNLQDPLSRI 181 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DPS+L TT + N+ G D+ Sbjct: 182 EGVGSVDAFGSQ-YAMRIWLDPSKLNNYRLTTQDVVTAIRSQNSQIAVGQLGGTPSVDNQ 240 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 241 ALNATMNAQSQL-------------QTPEQFRDITLRVNQDGSLVTLGDVAKIELGAEKY 287 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + A L + Sbjct: 288 DYLSRFNGQPASGMGIKLASGANELQTDQRVKARIAELTPFFPHGLEAKIAYETTPFVQA 347 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 348 SIKDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTL 407 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + S + + + + + Sbjct: 408 FAIVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQIQGALVGIALVLSAVFIP 467 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + A+ + +K + Sbjct: 468 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATL-----LKPVTAGHHHGKRG 522 Query: 534 IPDCIAIQFMR 544 F R Sbjct: 523 FFGWFNRMFDR 533 Score = 86.7 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 89/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + + ++ ++T P Sbjct: 272 VTLGDVAKIELGAEKYDYLSRFNGQPASGMGIKLASGANELQTDQRVKARIAELTPFFPH 331 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 332 GLEAKIAYETTPFVQASIKDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 391 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 392 FAILSAFGFSINTLTLFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSMGQ 449 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 450 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATLL 509 Query: 825 D 825 Sbjct: 510 K 510 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 865 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 924 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ L Sbjct: 925 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNHKGKDLVEATLEASRLRL 981 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 982 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1041 >gi|54307941|ref|YP_128961.1| preprotein translocase subunit SecF [Photobacterium profundum SS9] gi|46912367|emb|CAG19159.1| Putative preprotein translocase subunit SecF [Photobacterium profundum SS9] Length = 315 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 167/299 (55%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 F L+ AI FMR + S++ +I + T LN+G+DF GG + V +P Sbjct: 1 MFQLLKVDNAIDFMRWSKFAFVFSLMMIAVAIGTVATKKLNWGLDFTGGTLIEVGFEQPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL +R +LE+ GD QNF ++ LVRLQ + ++ + +++ Sbjct: 61 DLLKIRDSLEAAGFGDAIVQNFGTARDVLVRLQPRE-NAKGEVLGNQIIDALKVGTGQSV 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP + EL G + +IIS I +L+Y+ +RF+W A GA+ L D+ T+G Sbjct: 120 EMRRIEFVGPNVGDELAEAGGLAIIISLICILLYVSMRFEWRLAAGAVLALAHDVIITIG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+L +E +LT VAA+LT++GYS+ND +VV+DR+R+N + + D+I+ SI +TL Sbjct: 180 IFSLLEVEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-DVINNSITQTL 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS V+ + + GG++I FA+ + GI V SSI++A+ + L + R Sbjct: 239 SRTLITSGTTLFVVVALFMKGGTMIHGFALALLIGITVGTYSSIYVASALALKLGISRE 297 >gi|282857442|ref|ZP_06266675.1| protein-export membrane protein SecF [Pyramidobacter piscolens W5455] gi|282584727|gb|EFB90062.1| protein-export membrane protein SecF [Pyramidobacter piscolens W5455] Length = 292 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 89/295 (30%), Positives = 147/295 (49%), Gaps = 3/295 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + I FMR R + I+ F + S+ L+ G N GIDF GG L + V++ VR Sbjct: 1 MRLNIPFMRYRKVWLAIAAFFVLGSLGLVAARGFNLGIDFTGGNLLQIEFPEAVEVGQVR 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + + G Q++ + + + + + N E Sbjct: 61 EAMAKVGYGSAVIQSYSDKGVMIRLQGSSELTPAELRDKIIKAVDALH--TGSVKLVNFE 118 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +VGP + EL + I I+ +L+YI IRF++ FAL ++ L+ D TLG F+L Sbjct: 119 MVGPTVGSELRNQAIFASAIALAGILLYITIRFRFRFALVSVLALVHDTVLTLGLFSLLH 178 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 +E +T +AA+LT IGYS+N+ +V+ DR+R+N + + L+D SIN+TL R++ T Sbjct: 179 VELGMTFIAAILTTIGYSLNNTIVILDRVRENWRTLPK-VGMPQLLDNSINQTLARTINT 237 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 S+ F VL +WGG V+ F++ + GI+V SS+ + IL ++ + Sbjct: 238 SLTTFFPVLAFYIWGGPVLAGFSLAIMAGIIVGGFSSVCVTTSILCLWHEISPEK 292 >gi|91211801|ref|YP_541787.1| aminoglycoside/multidrug efflux system [Escherichia coli UTI89] gi|117624666|ref|YP_853579.1| aminoglycoside/multidrug efflux system [Escherichia coli APEC O1] gi|193064776|ref|ZP_03045854.1| acriflavine resistance protein D [Escherichia coli E22] gi|218554993|ref|YP_002387906.1| aminoglycoside/multidrug efflux system [Escherichia coli IAI1] gi|218559405|ref|YP_002392318.1| aminoglycoside/multidrug efflux system [Escherichia coli S88] gi|218696096|ref|YP_002403763.1| aminoglycoside/multidrug efflux system [Escherichia coli 55989] gi|218700926|ref|YP_002408555.1| aminoglycoside/multidrug efflux system [Escherichia coli IAI39] gi|237704985|ref|ZP_04535466.1| aminoglycoside/multidrug efflux system [Escherichia sp. 3_2_53FAA] gi|256017389|ref|ZP_05431254.1| aminoglycoside/multidrug efflux system [Shigella sp. D9] gi|260845101|ref|YP_003222879.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia coli O103:H2 str. 12009] gi|293410863|ref|ZP_06654439.1| conserved hypothetical protein [Escherichia coli B354] gi|293415732|ref|ZP_06658375.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli B185] gi|300997925|ref|ZP_07181891.1| putative ATP synthase F0, A subunit [Escherichia coli MS 200-1] gi|306814453|ref|ZP_07448615.1| aminoglycoside/multidrug efflux system [Escherichia coli NC101] gi|331648124|ref|ZP_08349214.1| putative aminoglycoside efflux pump [Escherichia coli M605] gi|331653889|ref|ZP_08354890.1| putative aminoglycoside efflux pump [Escherichia coli M718] gi|332278388|ref|ZP_08390801.1| aminoglycoside/multidrug efflux system [Shigella sp. D9] gi|91073375|gb|ABE08256.1| probable aminoglycoside efflux pump [Escherichia coli UTI89] gi|115513790|gb|ABJ01865.1| aminoglycoside/multidrug efflux system [Escherichia coli APEC O1] gi|192927659|gb|EDV82275.1| acriflavine resistance protein D [Escherichia coli E22] gi|218352828|emb|CAU98616.1| aminoglycoside/multidrug efflux system [Escherichia coli 55989] gi|218361761|emb|CAQ99358.1| aminoglycoside/multidrug efflux system [Escherichia coli IAI1] gi|218366174|emb|CAR03920.1| aminoglycoside/multidrug efflux system [Escherichia coli S88] gi|218370912|emb|CAR18731.1| aminoglycoside/multidrug efflux system [Escherichia coli IAI39] gi|226901351|gb|EEH87610.1| aminoglycoside/multidrug efflux system [Escherichia sp. 3_2_53FAA] gi|257760248|dbj|BAI31745.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia coli O103:H2 str. 12009] gi|281179532|dbj|BAI55862.1| multidrug resistance protein [Escherichia coli SE15] gi|291433380|gb|EFF06359.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli B185] gi|291471331|gb|EFF13815.1| conserved hypothetical protein [Escherichia coli B354] gi|294491975|gb|ADE90731.1| acriflavine resistance protein D [Escherichia coli IHE3034] gi|300304096|gb|EFJ58616.1| putative ATP synthase F0, A subunit [Escherichia coli MS 200-1] gi|305851847|gb|EFM52299.1| aminoglycoside/multidrug efflux system [Escherichia coli NC101] gi|307625967|gb|ADN70271.1| aminoglycoside/multidrug efflux system [Escherichia coli UM146] gi|315300445|gb|EFU59675.1| putative ATP synthase F0, A subunit [Escherichia coli MS 16-3] gi|320196311|gb|EFW70935.1| putative aminoglycoside efflux pump [Escherichia coli WV_060327] gi|323188227|gb|EFZ73520.1| inner membrane protein [Escherichia coli RN587/1] gi|323949498|gb|EGB45386.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H252] gi|323955718|gb|EGB51476.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H263] gi|324118189|gb|EGC12086.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli E1167] gi|330912251|gb|EGH40761.1| putative aminoglycoside efflux pump [Escherichia coli AA86] gi|331042984|gb|EGI15124.1| putative aminoglycoside efflux pump [Escherichia coli M605] gi|331048738|gb|EGI20814.1| putative aminoglycoside efflux pump [Escherichia coli M718] gi|332100740|gb|EGJ04086.1| aminoglycoside/multidrug efflux system [Shigella sp. D9] Length = 1037 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|301023820|ref|ZP_07187555.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS 196-1] gi|299880693|gb|EFI88904.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS 196-1] Length = 1037 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKGVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|256021845|ref|ZP_05435710.1| aminoglycoside/multidrug efflux system [Escherichia sp. 4_1_40B] Length = 1037 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|189499012|ref|YP_001958482.1| preprotein translocase subunit SecF [Chlorobium phaeobacteroides BS1] gi|189494453|gb|ACE03001.1| protein-export membrane protein SecF [Chlorobium phaeobacteroides BS1] Length = 308 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 87/309 (28%), Positives = 152/309 (49%), Gaps = 11/309 (3%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 + + F++ R IS+ + + LF GLN+GIDFKGG ++ + V + Sbjct: 1 MQLIHKTNVDFLKNRKIAYVISLTLMLAGVLSLFVKGLNFGIDFKGGTEVVLRFEEEVTV 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 VRS L+ + + + + LQ ++ + L + Sbjct: 61 GEVRSVLKEAGVEGAVKRY---GADRSILLQTAFEGNLNDLKSLVNNALDDRIADNPHEV 117 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + VGP I+ +L + ++ + IA+LIY+ IRF++ FA+ ++ + D+ LG F Sbjct: 118 LRIDSVGPSIASDLKWAALKALLGAVIAILIYVGIRFEFSFAVASVMAIFHDVFIVLGLF 177 Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 ++FG + + +AA LT+ GYS+ND VV+YDR+R+N++ S + ++S Sbjct: 178 SIFGGLFDYMPLVIDQGVIAAFLTIAGYSINDTVVIYDRIRENIRSG-KSSEYTSTFNRS 236 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +NETL R+V TS + VL + + G I F + GIV+ SS+FIAAP++L Sbjct: 237 LNETLSRTVITSGTTLVVVLVLFFFAGPAIRGFTFAILLGIVIGTYSSLFIAAPLVLDWQ 296 Query: 825 DWRAKNARI 833 + ++ Sbjct: 297 KKTRRPIKL 305 >gi|225025677|ref|ZP_03714869.1| hypothetical protein EIKCOROL_02579 [Eikenella corrodens ATCC 23834] gi|224941570|gb|EEG22779.1| hypothetical protein EIKCOROL_02579 [Eikenella corrodens ATCC 23834] Length = 313 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 96/305 (31%), Positives = 165/305 (54%), Gaps = 4/305 (1%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP- 588 F I FM IS++ I ++ L T GLNY ++F GG + V + Sbjct: 1 MDFFHRLKHDIPFMSYGKITTLISLITFIAAVFFLVTKGLNYSVEFTGGTVIEVQYAKEG 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 D + VR+ L L++G+ Q+ K ++RL + + AQ + V + + + Sbjct: 61 ADPNQVRTRLNELKMGEAQVQSLGTNKQLMIRLPNRQDMTSAQ--LSNNVLELLRKDHAD 118 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 ++++ E +GP++ EL+ G++ + + I ++IY+ +RF+W FA+ AI + D+ L Sbjct: 119 ASLRKVEFIGPQVGEELVTHGLLALGMVVIGIIIYLSVRFEWRFAVSAIIANMHDVVVIL 178 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINE 767 G FALF EF+LT +A +L ++GYSVN+ VVV+DR+R+N+ + +ID +I Sbjct: 179 GCFALFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENIHKPAMRGKTIPQIIDNAITA 238 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 T+ R++ T + V+ M V+GG+ + FAI + GIV SS+ +A+P+LLF R Sbjct: 239 TMSRTIITHGSTEAMVVSMLVFGGAALHGFAIALTIGIVFGIYSSVLVASPLLLFFGLTR 298 Query: 828 AKNAR 832 + Sbjct: 299 ENIHK 303 >gi|332755110|gb|EGJ85475.1| inner membrane protein [Shigella flexneri 4343-70] gi|333002072|gb|EGK21638.1| inner membrane protein [Shigella flexneri K-218] Length = 1037 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|331684118|ref|ZP_08384714.1| putative aminoglycoside efflux pump [Escherichia coli H299] gi|331079070|gb|EGI50272.1| putative aminoglycoside efflux pump [Escherichia coli H299] Length = 1037 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|253990873|ref|YP_003042229.1| Acridine efflux pump [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782323|emb|CAQ85487.1| Acridine efflux pump [Photorhabdus asymbiotica] Length = 1049 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 70/692 (10%), Positives = 182/692 (26%), Gaps = 43/692 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ + GLL + + + ++P+ P + Sbjct: 8 RPIFAWVIAIITMLAGLLAIM-----KLPVAQYPTIAPPAI---------SISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + N ITL+F + +V LQ Sbjct: 54 ATTVQNTVTQVIEQNMNGIDNLVYMSSNSDSAGNMNITLTFEAGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ + + + + D + Sbjct: 114 AMPLLPQEVQQQGIHVDKSTNAFLMVAGFTSEDGSMSQEDIADYVGANVKDPLSRVTGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + +P +L TT + NN G Sbjct: 174 DAMLFGNQ-YAMRIWLNPDKLINYKMTTLDVINAIKAQNNQIAAGQLGGTPPVPGQRLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + + Sbjct: 233 SIIAQTRLT-------------SPEEFSKILLRVNTDGSQVRLKDVAKVELGSESYNLIG 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T + + + S Sbjct: 280 RFNGKPAAGIGIKLGTGANALDTSKAVKEALKNMEPFFPHGLKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ +V Sbjct: 340 VVKTLIEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + S + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPKEATKKSMGQIQSALVGIAMVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++++S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMVLSVLVALILTPALCASMLKPIAKGSHGKQTGIFGWFNRLF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + V +L + ++ + +G + V Sbjct: 520 DKSTHHYTDSVGRILRNTGRYLVIYVLLVAGMAVMFTRLPSSFLPEEDQGVLLTMVQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + + + F V G +K Sbjct: 580 GATQEQTQKVLDEVNHYFSTEEKDRVVSVFTVSGFGFSGQGQNTGLAFMSLKDWSERPGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 + + +++ + + AI Sbjct: 640 ENKVPAIVARASAHFQKIKEGMVFAFNVPAIV 671 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + ++ + + +++ ++ ++ K + Sbjct: 258 SQVRLKDVAKVELGSESYNLIGRFNGKPAAGIGIKLGTGANALDTSKAVKEALKNMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + + + + +++ + + L + + + Sbjct: 318 PHGLKIVYPYDTTPFVKISIHEVVKTLIEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + A++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFAILAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + V +M +PMA +GGS F+I + +V++ ++ + + Sbjct: 436 GQIQSALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 84/280 (30%), Gaps = 7/280 (2%) Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 F + V S + ++ + E+ Sbjct: 761 FIDRGRVKKVYIQSEAPYRMLPSDIYKLYVRNKQGEMVPFSAFADMSKEPWTYGSPRLER 820 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-I 674 + G++ + + L + G L + Sbjct: 821 YNGLPSMEILGEAAPGKSTGDAMALMEELASQLPNGIGFDWTGMSYQERLSGNQAPALYA 880 Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 +S I + + + ++ W + + L I L G++ ++ +LT IG S Sbjct: 881 LSLIVVFLCLAALYESWSIPFSVMLVVPLGIVGALLATTFRGLDNDVYFKVGLLTTIGLS 940 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790 + +++ + + M+ + ++ L + TS+A + V+P+ + G Sbjct: 941 AKNAILIVEFAKDLMEKEGKG--LIEATLDAVRMRLRPILMTSLAFMLGVIPLVLSNGAG 998 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + + G++ A S +IF + I +K Sbjct: 999 SGSQNAVGTGVLGGMIAATSLAIFFVPVFFVVIKRRFSKK 1038 >gi|215487773|ref|YP_002330204.1| aminoglycoside/multidrug efflux system [Escherichia coli O127:H6 str. E2348/69] gi|215265845|emb|CAS10254.1| aminoglycoside/multidrug efflux system [Escherichia coli O127:H6 str. E2348/69] Length = 1037 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + + G++ A +I+ + + R Sbjct: 993 GSGGLHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|301046354|ref|ZP_07193516.1| putative ATP synthase F0, A subunit [Escherichia coli MS 185-1] gi|300301671|gb|EFJ58056.1| putative ATP synthase F0, A subunit [Escherichia coli MS 185-1] Length = 1037 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNSERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 78.6 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 87/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PM +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESRSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|218690596|ref|YP_002398808.1| aminoglycoside/multidrug efflux system [Escherichia coli ED1a] gi|218428160|emb|CAR08934.1| aminoglycoside/multidrug efflux system [Escherichia coli ED1a] gi|222034189|emb|CAP76930.1| aminoglycoside efflux pump [Escherichia coli LF82] gi|312947054|gb|ADR27881.1| aminoglycoside/multidrug efflux system [Escherichia coli O83:H1 str. NRG 857C] Length = 1037 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNSERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|121634402|ref|YP_974647.1| preprotein translocase subunit SecF [Neisseria meningitidis FAM18] gi|120866108|emb|CAM09846.1| putative protein-export membrane protein [Neisseria meningitidis FAM18] gi|325127702|gb|EGC50613.1| protein-export membrane protein SecF [Neisseria meningitidis N1568] gi|325131939|gb|EGC54639.1| protein-export membrane protein SecF [Neisseria meningitidis M6190] gi|325137610|gb|EGC60187.1| protein-export membrane protein SecF [Neisseria meningitidis ES14902] gi|325203701|gb|ADY99154.1| protein-export membrane protein SecF [Neisseria meningitidis M01-240355] Length = 311 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L+IGD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + I ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298 Query: 830 NAR 832 + Sbjct: 299 IGK 301 >gi|90416763|ref|ZP_01224693.1| protein export protein SecD [marine gamma proteobacterium HTCC2207] gi|90331516|gb|EAS46752.1| protein export protein SecD [marine gamma proteobacterium HTCC2207] Length = 614 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 160/523 (30%), Positives = 271/523 (51%), Gaps = 40/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDL GG H +LEVD + L+ +++++ L++E I Sbjct: 105 NLAPTTPDWLRDLGGMPMKLGLDLSGGVHFLLEVDLASALATRLESDLEDVKTALREERI 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S N+I F D+ + L+ D + + + Sbjct: 165 RYRSFELSNNQIVGQFRDTEEVARAKALIRANLR--------DLQPQSQTGQNPLTLVLK 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS ++ +AI+Q++ +R R++++G+SE + R G +RI+++LPG QD + ++++ Sbjct: 217 LSDIASREIEDNAIKQNLTSLRNRVNELGVSEPMVSRQGKNRIVVELPGVQDTAEAKRII 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F + G +E K I+G ++ A A+FD Sbjct: 277 GKTANLEFRLEAS---GRVGEMFDFRDPKGQGPNARLESKTVITGENVTDARASFDENG- 332 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKP------------------------LAVVLDGRV 302 +P V+I+ D G + TRDNIG+ V Sbjct: 333 RPQVNITLDAKGGWQMGYATRDNIGRRLGVLFIEFKTKLEKSIDENGELVLTPVPFVEES 392 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + QA + +I+G + L+ +LRAG+L + IVEER +G LG+D+I Sbjct: 393 IISLATVQAQLGKQFRITGLE-QRESSELSLLLRAGALAAPMYIVEERTIGPSLGADNIA 451 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 G ++ GL L++LFM+V+Y +G+ A+ ++ +N++L +A +SLLGATLTLP IAGIVL Sbjct: 452 LGVKSVAVGLALVLLFMLVVYRGFGVFANIALAMNLVLLVAFMSLLGATLTLPGIAGIVL 511 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ RIREE S+ S+ G+ RA+ +I D+NIT LI ++LF G Sbjct: 512 TVGMAVDANVLIFSRIREELAAGASIQGSISAGYDRAFVSILDANITTLIVALILFLIGS 571 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ + IL SMFT+I + R ++ ++ + +K++ I Sbjct: 572 GPVQGFAVTLSIGILTSMFTSIVMTRGLVNLVVGGRNIKTLWI 614 Score = 152 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 98/275 (35%), Gaps = 4/275 (1%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 +I + + G + + + + + Sbjct: 337 NITLDAKGGWQMGYATRDNIGRRLGVLFIEFKTKLEKSIDENGELVLTPVPFVEESIISL 396 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + Q++ + + + + I +GP + + I G+ Sbjct: 397 ATVQAQLGKQFRITGLEQRESSELSLLLRAGALAAPMYIVEERTIGPSLGADNIALGVKS 456 Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 V + +L+++ + ++ F + A L +++ + F +L G L +A ++ +G Sbjct: 457 VAVGLALVLLFMLVVYR-GFGVFANIALAMNLVLLVAFMSLLGATLTLPGIAGIVLTVGM 515 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 +V+ V+++ R+R+ + S + I + + ++ I L + + G Sbjct: 516 AVDANVLIFSRIREELAA---GASIQGSISAGYDRAFVSILDANITTLIVALILFLIGSG 572 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + FA+ ++ GI+ + +SI + ++ + R Sbjct: 573 PVQGFAVTLSIGILTSMFTSIVMTRGLVNLVVGGR 607 >gi|323225486|gb|EGA09717.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 995 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.4 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 56.6 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 S + +++ + + + + D + + L + TS+A VLPMA G Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGG 992 Query: 793 VI 794 + Sbjct: 993 RL 994 >gi|21232113|ref|NP_638030.1| multidrug-efflux transporter [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767759|ref|YP_242521.1| multidrug-efflux transporter [Xanthomonas campestris pv. campestris str. 8004] gi|21113860|gb|AAM41954.1| multidrug-efflux transporter [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573091|gb|AAY48501.1| multidrug-efflux transporter [Xanthomonas campestris pv. campestris str. 8004] Length = 1044 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 70/688 (10%), Positives = 178/688 (25%), Gaps = 48/688 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L + ++PS P + + + Sbjct: 8 RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPA-------------VAITANY 49 Query: 63 DDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 + ++ L + ITL+F + + +V Sbjct: 50 PGASAQTLEDTVTQVIEQKMKGLDNLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L + L + ++ + T + + + + S + + I Sbjct: 110 KLSLATALLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + N G + Sbjct: 170 QGVGDTTLFGSQYSM-RIWLDPDKLNNFNLTPVDVRAAIQAQNAQVSAGQLGALPAVANQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + I Sbjct: 229 QLNATITAQTRL-------------KTAEEFENILLRTRTDGSQVRLRDVARIELGSESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T+ P Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +L++ G T+ ++ Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + Q S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEQLSPKEATRKSMDQITGALVGVALVLAAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDIN 526 + FFGG R F+IT+ ++ +S+ A+ + A+ +++ + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMTLSVLVAMVLTPALCATLLKPGHGMATTGFFGWFNRV 515 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + + + + ++ ++ + + T + +G + + V Sbjct: 516 FDRSNGRYQGVVRHMLGKGWRYMIAYVVIVALVVVGFMKTPVGFLPDEDQGTLFVLVQLP 575 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + + L+ ++ + Q F V G ++ Sbjct: 576 PGATDARTGAVLKQVEHHFLVDQKDSVAGIFAVSGFSFAGTGQNVGFAFVKLRPWDERTG 635 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674 ++ + L + V Sbjct: 636 KGQSVTDVAAKAGAFFATLRDAQVFAVA 663 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 91/248 (36%), Gaps = 6/248 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 V L V + + + L +++ R ++ ++ Sbjct: 253 TRTDGSQVRLRDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEE 312 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700 + P R I + + ++ + + + + +++ + + L + Sbjct: 313 QEKFFPPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAV 372 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + + T G A+FG N + A++ IG V+D +VV + + + +S ++ Sbjct: 373 PVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEQLSPKEA 430 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817 KS+++ G V ++ +PMA +GGS F+I + + ++ ++ + Sbjct: 431 TRKSMDQITGALVGVALVLAAVFVPMAFFGGSTGVIYRQFSITIVSAMTLSVLVAMVLTP 490 Query: 818 PILLFIYD 825 + + Sbjct: 491 ALCATLLK 498 Score = 68.2 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 63/170 (37%), Gaps = 9/170 (5%) Query: 668 KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 G G++ +++++ + W I + L + TL L ++ Sbjct: 866 TGQTGLLYGLSILIVFLCLAALYESWSIPFSVILVVPLGVFGTLVAAVLTWKMNDVYFQV 925 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 +LT IG + + +++ + ++ L+ S ++ L + TS+A + V+ Sbjct: 926 GLLTTIGLASKNAILIVEFAKE---LHEGGKSLVAAALEAARMRLRPILMTSLAFILGVV 982 Query: 785 PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 P+ + G + + G++ +IF + + + A Sbjct: 983 PLVLTSGAGAGAQHALGTAVIGGMISGTVLAIFFVPLFFVLVRGLFERRA 1032 >gi|332087910|gb|EGI93035.1| inner membrane protein [Shigella boydii 5216-82] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVPQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVTAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDRKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.3 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVTAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 65/186 (34%), Gaps = 8/186 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 + E L + IS + + + + ++ W + + L + L Sbjct: 853 FSLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALL 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + + + + + L Sbjct: 913 ATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNQKGHDLFEATLHACRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA G + + G++ A +I+ + + Sbjct: 970 RPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRR 1029 Query: 827 RAKNAR 832 R Sbjct: 1030 FPLKPR 1035 >gi|529013|gb|AAA20584.1| multidrug resistance protein [Escherichia coli] Length = 1038 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATGELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ + + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAEPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFG G R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGPTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATGELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAEPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +G G++ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGPTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 877 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 936 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 937 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 993 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 994 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1036 >gi|312173142|emb|CBX81397.1| Acriflavine resistance protein F Protein envD [Erwinia amylovora ATCC BAA-2158] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 79/689 (11%), Positives = 189/689 (27%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L + ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGGLAII-----SLPIEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ++L+F + +V Sbjct: 50 PGASAETLENTVTQVIEQNMTGLDNLMYMSSQSSHTGQATVSLTFEAGTNPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D + + + +I++ + S + D + Sbjct: 110 QLQTALRKLPQDVQSQGVNVNKTGDTNILMVAFVSTDGSMDKQDISDYVASHLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q + DP++L TT ++ N+ G + Sbjct: 170 NGVGQVDAYGSQ-YAMRIWLDPNKLINYALTTTEVIDAIKSQNSQVAVGQLGGLPSVERQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRAITLRVNADGSVVTLGQVAQVALGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRYNGMPASGLGIKLASGANELQTDKLVRARLDELSRFFPQGLKAEIAFETSPFVQA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + + T +L G ++ ++ Sbjct: 336 SIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPREATRKSMGQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ ++++S+ AI + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAIILTPALCSTLLKPLARGHHHGRRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + W V L ++ ++ + ++ +G V Sbjct: 516 NRTFNRNAERYKRSVGKMLAKGGRWLVVYLALIAVMALLYIRLPTSFLPLEDRGLFTTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L + +E ++ ++ + + + F G+ R+ +K Sbjct: 576 QLPPGSTLQQTMAVVEKVEHYYLTHEQNNVQSVFATVGAGPGGNGQNVARLFVRLKDWHD 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 I +T K R + +V Sbjct: 636 RIGGDNTSFAIIERATKAFRRINEAKVVA 664 Score = 82.4 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 86/235 (36%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + L + + +++ +++ P Sbjct: 260 VTLGQVAQVALGAEKYDYLSRYNGMPASGLGIKLASGANELQTDKLVRARLDELSRFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + +++ + + L + + + T Sbjct: 320 GLKAEIAFETSPFVQASIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G FG N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ +PMA +GG+ F++ + +V++ +I + + Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAIILTPAL 492 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 82/248 (33%), Gaps = 8/248 (3%) Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + S + + E+ G++ + + L Sbjct: 791 NASGAMVPFTAFAHSHWENGSPRLERYDGYPALEIVGEAATGVSNGAAMDTMEQLVSQLP 850 Query: 650 TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + G + + + +S + + + + ++ W + + L + Sbjct: 851 NGIGLQWTGASLQERMTGAQAPALYALSLLVVFLCLAALYESWSIPFSVMLVVPLGVLGA 910 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 L L G+E ++ +LT++G S + +++ + + + + ++ + Sbjct: 911 LIATWLRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---INSRGSELVAATLEASRQ 967 Query: 768 TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 L + TS+A VLPMA+ G S + + G++ A +IF +++ Sbjct: 968 RLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTGVLGGMISATVLAIFFVPLFFVWVR 1027 Query: 825 DWRAKNAR 832 + Sbjct: 1028 RRFPLKDK 1035 >gi|329848931|ref|ZP_08263959.1| putative aminoglycoside efflux pump [Asticcacaulis biprosthecum C19] gi|328843994|gb|EGF93563.1| putative aminoglycoside efflux pump [Asticcacaulis biprosthecum C19] Length = 1046 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 67/574 (11%), Positives = 158/574 (27%), Gaps = 42/574 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + ++++P + ++ + Sbjct: 9 RPIFAWVVALVIMLAGALSI-----TRLPVEQYPDIALP-------------QVRVQANY 50 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S +TL F + +V Sbjct: 51 PGASAKTVEDSVTQIIEQGMTGLDRLKYMTAQSSDNGGANVTLVFEAGTDIDVAQVQVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q V ++L D + + +++ + ++ D + Sbjct: 111 QIQSVINRLPQDVQAQGVRVNKASNNMLMVFSLYSSDGSLTNADLGDYLVSNVQDTLARV 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L T A + N + D Sbjct: 171 DGVGETNVFGSG-YAMRIWLDPDKLASFNLTPADVITAIRAQNAQVSAGQLAAQPATDDV 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I + + + Sbjct: 230 ALNATITSQSRLT-------------TAGEFASIIVKSDTTGATVYLRDVARVELGQQNY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L S + T E L + + Sbjct: 277 ESFSSLNGKPATGIAISLATGANALKTAELVKAKMEELSESFPSNIEYAIPNDSTDFIKL 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T+ +L+ G ++ L ++ Sbjct: 337 SIKEVIKTLIEAIVLVFVVMYLFLQSWRATLIPTIAVPIVLLGTMGILAAFGFSVNLLTM 396 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + S + + + V Sbjct: 397 FGLVLAIGLLVDDAIVVVENVERVMHEEGLSPKEATRKSMDEITGALVGIGLVLAAMFVP 456 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + + + L+ F Sbjct: 457 MAFFGGTQGIIYRQFSITIVSAMTLSVVVALVLTPPLCATL-LRPVNHEKRHKRLNLFDR 515 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 + F RA I L + Sbjct: 516 FFNGFNRNFDRASRGYRAGVGAMIHKPIRYLLVY 549 Score = 91.3 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 99/257 (38%), Gaps = 9/257 (3%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 V L V Q + + +++ +++ ++++ Sbjct: 256 TTGATVYLRDVARVELGQQNYESFSSLNGKPATGIAISLATGANALKTAELVKAKMEELS 315 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702 E P + + I++ I +I + + + + +++ W L + + Sbjct: 316 ESFPSNIEYAIPNDSTDFIKLSIKEVIKTLIEAIVLVFVVMYLFLQSWRATLIPTIAVPI 375 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T+G A FG NL + ++ IG V+D +VV + + ++ +S ++ Sbjct: 376 VLLGTMGILAAFGFSVNLLTMFGLVLAIGLLVDDAIVVVENV--ERVMHEEGLSPKEATR 433 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819 KS++E G V + +PMA +GG +I F+I + + ++ ++ + P+ Sbjct: 434 KSMDEITGALVGIGLVLAAMFVPMAFFGGTQGIIYRQFSITIVSAMTLSVVVALVLTPPL 493 Query: 820 LLFIYD---WRAKNARI 833 + ++ R+ Sbjct: 494 CATLLRPVNHEKRHKRL 510 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 6/148 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + + L I L L G++ ++ +LT IG S + +++ + R + Sbjct: 891 SWTIPFAVVLVIPLSILGALLATWLRGLDNDIFFQVGLLTTIGLSSKNAILIVEYAR--L 948 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805 + D ++ L + TS A VLP+A+ G + + G+ Sbjct: 949 LHQERGMPLLDATLEAARIRLRPILMTSFAFTFGVLPLALATGAGSGAQRAIGTGLIGGV 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833 + A +IF P+ + K+ + Sbjct: 1009 LTATFLAIFFV-PLFFMLVQKLFKHDNL 1035 >gi|331673926|ref|ZP_08374689.1| putative aminoglycoside efflux pump [Escherichia coli TA280] gi|331069199|gb|EGI40591.1| putative aminoglycoside efflux pump [Escherichia coli TA280] Length = 1035 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 75/687 (10%), Positives = 178/687 (25%), Gaps = 49/687 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDI 525 + FFGG R F+IT+ ++++S+ A+ + A+ + +K Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 N + + + R + + + + L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLRLPTSFLPLEDRGMFTTSVQL 575 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 +E ++ + + + F G+ R+ +K Sbjct: 576 PSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSERD 635 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 SKTGTSFAIIERATKAFNKIKEARVIA 662 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 874 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 933 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 934 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 990 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 991 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1033 >gi|299134928|ref|ZP_07028119.1| protein-export membrane protein SecF [Afipia sp. 1NLS2] gi|298589905|gb|EFI50109.1| protein-export membrane protein SecF [Afipia sp. 1NLS2] Length = 352 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 118/302 (39%), Positives = 193/302 (63%), Gaps = 6/302 (1%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + ++PD + FM R + IS + SI +I L FTHGLN+GIDFKGG L + Sbjct: 24 YGVIPALRVVPDDTTLHFMDLRRFSFPISAVLSIFAITLYFTHGLNFGIDFKGGTLLEIQ 83 Query: 585 ANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 P DL+ +R++L L +GD+ Q F G +N L+R+ QPG AQ ++ V+ + Sbjct: 84 EKSGPADLAKLRTDLGKLGLGDVQLQQFGGPQNVLIRIAEQPGGDAAQQAAVQKVRGAL- 142 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + E+VGP++S EL+ G +G++++ + +L+Y+W RF+W FALGA+ + D Sbjct: 143 --GDAVEYRRVEVVGPRVSGELLAYGTLGLMLAIVGILLYLWFRFEWQFALGAMVANVHD 200 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I T+GF ++ I+F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y + DL+++ Sbjct: 201 IVLTIGFMSITQIDFDLTSIAALLTILGYSLNDTVVIYDRIRELLRRY-KKMPMEDLLNQ 259 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822 S+N TL RS+ T + +++L + ++GG I SFA M FG ++V +SIFIAAP+L++ Sbjct: 260 SVNSTLSRSIITHVTVTLALLALLLFGGKAIHSFAATMMFGVVLVGTYTSIFIAAPMLIY 319 Query: 823 IY 824 + Sbjct: 320 LG 321 >gi|78188011|ref|YP_378349.1| preprotein translocase subunit SecF [Chlorobium chlorochromatii CaD3] gi|78170210|gb|ABB27306.1| protein translocase subunit secF [Chlorobium chlorochromatii CaD3] Length = 310 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 11/302 (3%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 I F+ AR IS++ + I L GLNYGIDF+GG ++ + + +D+ Sbjct: 1 MRIFHKTNFNFLAARKVAYIISLVLLLVGIGSLALRGLNYGIDFRGGSEVVIRFEKDIDV 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 S +RS L++ + Q + + + L I Sbjct: 61 SHIRSVLDAAGVSGTLKQY---GMDRSFLFSTVFQGDSGELKTLLENALNDRITSNKHEI 117 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + VGP I+ +L + + + A+L+Y+ RF+ FA + + DI LG F Sbjct: 118 VRIDAVGPSIATDLKWSALKALAGALFAILLYVGFRFEVKFAAAGVVAIFHDIIVVLGLF 177 Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 +L G +E + + +AA LT+ GYS+ D VVVYDR+R+ ++ + + ++S Sbjct: 178 SLLGGVFPFMPLEMDQSIIAAFLTIAGYSITDTVVVYDRIRERIR-NQKPSEYERIFNES 236 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +N+TL R+V TS I+VL + ++ G I FA + GI++ SSIF+AAP++ Sbjct: 237 MNQTLSRTVITSGTVLIAVLVLFLFAGPAIRGFAFAVFSGILIGTYSSIFVAAPLVFDWL 296 Query: 825 DW 826 Sbjct: 297 KR 298 >gi|225075073|ref|ZP_03718272.1| hypothetical protein NEIFLAOT_00072 [Neisseria flavescens NRL30031/H210] gi|224953557|gb|EEG34766.1| hypothetical protein NEIFLAOT_00072 [Neisseria flavescens NRL30031/H210] Length = 311 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 163/299 (54%), Gaps = 3/299 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + VD Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ R L++L++GD+ Q K+ ++RL + G + AQ + V + + P Sbjct: 61 VNKTRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDNPDVA 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T + V+ M V+GG+ + F+ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSTALTIGIVFGIYSSVLVASPLLLMFGLSRE 297 >gi|284922415|emb|CBG35502.1| putative multidrug efflux pump [Escherichia coli 042] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSILYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSILYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVSFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|320200028|gb|EFW74617.1| putative aminoglycoside efflux pump [Escherichia coli EC4100B] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPTKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|260548780|ref|ZP_05823002.1| protein-export membrane protein SecF [Acinetobacter sp. RUH2624] gi|260407948|gb|EEX01419.1| protein-export membrane protein SecF [Acinetobacter sp. RUH2624] Length = 321 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 4/310 (1%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 M + P ++ D I FM+ SIL ++ SI + T GLN G+DF GG Sbjct: 1 MMTKVTQQPSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + +P + S V L+ D Q K+ LVR+ Q + + Sbjct: 61 VSAELNYAQPANQSEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQEVKVE---DLNNAI 117 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 K + + + + VG ++ EL + V ++ I MLIY+ IRF++ A+GA+ Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 +L DI +G FALF F+LT +AAVL +IG+S+ND +VV DR+R+N + + R Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 +++D ++ ETL R+++TSM + VL M GG + F++ M G+ V SSI+I Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296 Query: 819 ILLFIYDWRA 828 L+ R Sbjct: 297 FALWRGLNRQ 306 >gi|157161929|ref|YP_001459247.1| aminoglycoside/multidrug efflux system [Escherichia coli HS] gi|157067609|gb|ABV06864.1| acriflavine resistance protein D [Escherichia coli HS] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGITGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 89/245 (36%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +G G++ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGITGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|205351783|ref|YP_002225584.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271564|emb|CAR36384.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626819|gb|EGE33162.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 1049 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + +P+ L + T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + I Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + P + S Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + + I+ + + + +G V Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ G + + G+V A Sbjct: 959 G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVSSSGAGSGAQNAVGTGVLGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|70732296|ref|YP_262052.1| preprotein translocase subunit SecD [Pseudomonas fluorescens Pf-5] gi|68346595|gb|AAY94201.1| protein-export membrane protein SecD [Pseudomonas fluorescens Pf-5] Length = 622 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 161/526 (30%), Positives = 273/526 (51%), Gaps = 40/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD D ++ L++Y +++S L+KE + Sbjct: 107 NLAQTTPQWLRNLGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKERL 166 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q+ I L F+D +E + + D ++ + Sbjct: 167 RYRSLPQLNGAIQLGFSDEDSREQARSLIRKNFND-FDIVPADLNGQPVLR-------LA 218 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 219 MTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 278 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F R+ + +E + I+G + A A +D Sbjct: 279 GKTANLEFRLAAEP-GASKATSESFEFREGNRPPAQIERGLIITGDQVTDAQAGYDEHG- 336 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299 +P V+I D G TR N+G+ + + Sbjct: 337 RPQVNIKLDGHGGELMNRSTRSNVGRSMAVIFIEQKPITTYTKQVVDGVEKDVPVQAFKE 396 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 397 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 456 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+I +Y +G++A ++ LN++L LAL+SLLGATLTLP IAG Sbjct: 457 NITKGIDASLWGMLFVSLFIIAIYRFFGVIATVALALNMVLLLALMSLLGATLTLPGIAG 516 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE +V +++ GF RA++ I DSN+T L+ +LF Sbjct: 517 IVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFA 576 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+TM L I SMFTAI + RAM+ I + K + I Sbjct: 577 MGTGPVKGFAVTMSLGIFTSMFTAIWLTRAMVNLIFGGRDFKKLWI 622 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 93/248 (37%), Gaps = 5/248 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + V V + + + ++ L G + + + Sbjct: 376 TYTKQVVDGVEKDVPVQAFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAG 435 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + +GP + + I KGI + + + ++I +++ F + A L L+ Sbjct: 436 GLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRF-FGVIATVALALN 494 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + L +L G L +A ++ +G +V+ V+++ R+R+ + ++ + I++ Sbjct: 495 MVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMTVQRAINE 551 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LF 822 + +++ + + G + FA+ M+ GI + ++I++ ++ L Sbjct: 552 GFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIWLTRAMVNLI 611 Query: 823 IYDWRAKN 830 K Sbjct: 612 FGGRDFKK 619 Score = 46.6 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 39/389 (10%), Positives = 90/389 (23%), Gaps = 34/389 (8%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + IG + + PN P + A +++ + D Sbjct: 4 KYPLWKYLLILAVLAIGFIYSAPNLYPDDPAIQVSGASTALQVT-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120 D + S+ L + + D V L Sbjct: 51 LDRASKALTDA----------GINVKASSIAANGKGGLLRLTNKEDQLPAKDVVRKALGD 100 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174 LN+ + + + + + A++ +++ + + Sbjct: 101 DYVVALNLAQTTPQWLRNLGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSL 160 Query: 175 GISESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231 E R + I + E + R L+ N + + Sbjct: 161 LRKERLRYRSLPQLNGAIQLGFSDEDSREQARSLIRKNFNDFDIVPADLNGQPVLRLAMT 220 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 + ++ +Y ++ + +N + I + G + E R Sbjct: 221 PAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGK 280 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 A + IE I+ + + Sbjct: 281 TANLEFRLAAEPGASKATSESFEFREGNRPPAQIERGLIITGDQVTDAQAGYDEHGRPQV 340 Query: 352 VGADLGSDSIYKGTCA-IVAGLVLIVLFM 379 G G + V+F+ Sbjct: 341 NIKLDGHGGELMNRSTRSNVGRSMAVIFI 369 >gi|26248839|ref|NP_754879.1| aminoglycoside/multidrug efflux system [Escherichia coli CFT073] gi|300981761|ref|ZP_07175725.1| putative ATP synthase F0, A subunit [Escherichia coli MS 45-1] gi|26109245|gb|AAN81447.1|AE016764_129 Probable aminoglycoside efflux pump [Escherichia coli CFT073] gi|300408946|gb|EFJ92484.1| putative ATP synthase F0, A subunit [Escherichia coli MS 45-1] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNSERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 78.6 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 87/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PM +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|315292412|gb|EFU51764.1| putative ATP synthase F0, A subunit [Escherichia coli MS 153-1] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVAKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNSERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 86/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVAKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PM +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|315288107|gb|EFU47507.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS 110-3] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDGSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|169794703|ref|YP_001712496.1| preprotein translocase subunit SecF [Acinetobacter baumannii AYE] gi|213157926|ref|YP_002320724.1| protein-export membrane protein SecF [Acinetobacter baumannii AB0057] gi|215482290|ref|YP_002324472.1| protein-export membrane protein SecF [Acinetobacter baumannii AB307-0294] gi|301347240|ref|ZP_07227981.1| preprotein translocase subunit SecF [Acinetobacter baumannii AB056] gi|301511794|ref|ZP_07237031.1| preprotein translocase subunit SecF [Acinetobacter baumannii AB058] gi|301595292|ref|ZP_07240300.1| preprotein translocase subunit SecF [Acinetobacter baumannii AB059] gi|332852196|ref|ZP_08434001.1| export membrane protein SecF [Acinetobacter baumannii 6013150] gi|332868164|ref|ZP_08438043.1| export membrane protein SecF [Acinetobacter baumannii 6013113] gi|169147630|emb|CAM85493.1| preprotein translocase, IISP family, membrane subunit [Acinetobacter baumannii AYE] gi|213057086|gb|ACJ41988.1| protein-export membrane protein SecF [Acinetobacter baumannii AB0057] gi|213985750|gb|ACJ56049.1| protein-export membrane protein SecF [Acinetobacter baumannii AB307-0294] gi|332729326|gb|EGJ60666.1| export membrane protein SecF [Acinetobacter baumannii 6013150] gi|332733508|gb|EGJ64676.1| export membrane protein SecF [Acinetobacter baumannii 6013113] Length = 321 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 4/310 (1%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 M + P ++ D I FM+ SIL ++ SI + T GLN G+DF GG Sbjct: 1 MMTKVTQQPSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + +P + + V L+ D Q K+ LVR+ Q + + Sbjct: 61 VSAELNYAQPANQAEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQDIKVE---DLNNAI 117 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 K + + + + VG ++ EL + V ++ I MLIY+ IRF++ A+GA+ Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVI 177 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 +L DI +G FALF F+LT +AAVL +IG+S+ND +VV DR+R+N + + R Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 +++D ++ ETL R+++TSM + VL M GG + F++ M G+ V SSI+I Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296 Query: 819 ILLFIYDWRA 828 L+ R Sbjct: 297 FALWRGLNRQ 306 >gi|237730184|ref|ZP_04560665.1| multidrug transporter acriflavin resistance protein F [Citrobacter sp. 30_2] gi|226908790|gb|EEH94708.1| multidrug transporter acriflavin resistance protein F [Citrobacter sp. 30_2] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 71/684 (10%), Positives = 187/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------AISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPQTTQDDISDYVASNVKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G + Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPNQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNSDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTANAIKAKLVELQPFFPQGMKVVYPYDTTPFVTISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIVLVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDHLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526 FGG R F+IT+ ++ +S+ A+ + A+ + R + Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKRSGFFGWFNAK 518 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + ++ + + V I+ ++ + + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRKTGRYLVVYLIIVIGMAVLFMRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 AGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERSG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 + +++ + ++ + Sbjct: 639 NENNVESIIARATRAFSQIRDGLV 662 Score = 74.3 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 78/203 (38%), Gaps = 8/203 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + A L ++ + + + +T E+++ +++ + M +++ Sbjct: 301 DTANAIKAKLVELQPFFPQGMKVVYPYDTTPFVTISIHEVVKTLFEAIVLVFLVMYLFLQ 360 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 L + + + T A FG N + ++ IG V+D +VV + + Sbjct: 361 ---NIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV- 416 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 + + ++ +KS+++ G V +M +PMA +GGS F+I + Sbjct: 417 -ERVMMEDHLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 803 FGIVVAASSSIFIAAPILLFIYD 825 + ++ ++ + + + Sbjct: 476 SAMALSVLVALILTPALCATLLK 498 Score = 60.9 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + + L + G L + IS I + + + ++ W Sbjct: 838 EAMALMESLAEKLPNGIGHDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M Sbjct: 898 FSVMLVVPLGVVGALLAASLRGMNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|53726173|ref|YP_103939.1| preprotein translocase subunit SecF [Burkholderia mallei ATCC 23344] gi|121601113|ref|YP_991651.1| preprotein translocase subunit SecF [Burkholderia mallei SAVP1] gi|124385393|ref|YP_001027147.1| preprotein translocase subunit SecF [Burkholderia mallei NCTC 10229] gi|126451077|ref|YP_001082096.1| preprotein translocase subunit SecF [Burkholderia mallei NCTC 10247] gi|167000540|ref|ZP_02266352.1| protein-export membrane protein SecF [Burkholderia mallei PRL-20] gi|238562007|ref|ZP_00441101.2| protein-export membrane protein SecF [Burkholderia mallei GB8 horse 4] gi|254178913|ref|ZP_04885567.1| protein-export membrane protein SecF [Burkholderia mallei ATCC 10399] gi|254207994|ref|ZP_04914344.1| protein-export membrane protein SecF [Burkholderia mallei JHU] gi|254355864|ref|ZP_04972142.1| protein-export membrane protein SecF [Burkholderia mallei 2002721280] gi|52429596|gb|AAU50189.1| protein-export membrane protein SecF [Burkholderia mallei ATCC 23344] gi|121229923|gb|ABM52441.1| protein-export membrane protein SecF [Burkholderia mallei SAVP1] gi|124293413|gb|ABN02682.1| protein-export membrane protein SecF [Burkholderia mallei NCTC 10229] gi|126243947|gb|ABO07040.1| protein-export membrane protein SecF [Burkholderia mallei NCTC 10247] gi|147751888|gb|EDK58955.1| protein-export membrane protein SecF [Burkholderia mallei JHU] gi|148024839|gb|EDK83017.1| protein-export membrane protein SecF [Burkholderia mallei 2002721280] gi|160694827|gb|EDP84835.1| protein-export membrane protein SecF [Burkholderia mallei ATCC 10399] gi|238523481|gb|EEP86919.1| protein-export membrane protein SecF [Burkholderia mallei GB8 horse 4] gi|243063594|gb|EES45780.1| protein-export membrane protein SecF [Burkholderia mallei PRL-20] Length = 313 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 156/302 (51%), Gaps = 6/302 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR +S++ + ++ LF GL+ ++F GG + V + Sbjct: 1 MEFFRIRKDIPFMRHALVFNVVSLVTFLSAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L VR+ L D QNF +N L+RL + G + AQ + V + Sbjct: 61 LEPVRATL---GYADSQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMAALKAQNADVA 115 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +Q E VGP++ REL G++ + I ++IY+ RF+W +A+ I + D+ LGF Sbjct: 116 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 175 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L+ +AAVL ++GYSVN+ VV++DR+R+ + ++ +++I+ +I T+ Sbjct: 176 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 234 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI+ SS+F+A + +++ R Sbjct: 235 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 294 Query: 831 AR 832 + Sbjct: 295 VK 296 >gi|110806402|ref|YP_689922.1| aminoglycoside/multidrug efflux system [Shigella flexneri 5 str. 8401] gi|110615950|gb|ABF04617.1| Probable aminoglycoside efflux pump [Shigella flexneri 5 str. 8401] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQSVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 65.1 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + +E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRVLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|161504349|ref|YP_001571461.1| hypothetical protein SARI_02459 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865696|gb|ABX22319.1| hypothetical protein SARI_02459 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1049 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVAANMKDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + +P+ L + T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPIDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + I Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + P + S Sbjct: 280 QFNGQPASGLGIKLATGANALDTAAAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEEKKGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + + I+ + + + +G V Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 DENKVEAITQRATAAFSQIKDAMVFA 665 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ Q + L +++ + KK+ Sbjct: 258 SQVRLRDVAKIELGGENYDVIAQFNGQPASGLGIKLATGANALDTAAAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.2 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEELASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|193068337|ref|ZP_03049300.1| acriflavine resistance protein D [Escherichia coli E110019] gi|192958289|gb|EDV88729.1| acriflavine resistance protein D [Escherichia coli E110019] gi|324020141|gb|EGB89360.1| putative ATP synthase F0, A subunit [Escherichia coli MS 117-3] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDDLAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 87/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ + + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDDLAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|161869540|ref|YP_001598707.1| preprotein translocase subunit SecF [Neisseria meningitidis 053442] gi|161595093|gb|ABX72753.1| protein-export membrane protein [Neisseria meningitidis 053442] gi|261393021|emb|CAX50613.1| preprotein translocase SecF subunit [Neisseria meningitidis 8013] Length = 311 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L+IGD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + I ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGTALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298 Query: 830 NAR 832 + Sbjct: 299 IGK 301 >gi|324114687|gb|EGC08655.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia fergusonii B253] gi|325498249|gb|EGC96108.1| multidrug efflux system protein [Escherichia fergusonii ECD227] Length = 1049 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKYQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|15676512|ref|NP_273652.1| preprotein translocase subunit SecF [Neisseria meningitidis MC58] gi|218767744|ref|YP_002342256.1| preprotein translocase subunit SecF [Neisseria meningitidis Z2491] gi|254804491|ref|YP_003082712.1| protein-export membrane protein SecF [Neisseria meningitidis alpha14] gi|7225838|gb|AAF41035.1| protein-export membrane protein SecF [Neisseria meningitidis MC58] gi|121051752|emb|CAM08056.1| putative protein-export membrane protein [Neisseria meningitidis Z2491] gi|254668033|emb|CBA04437.1| protein-export membrane protein SecF [Neisseria meningitidis alpha14] gi|254670809|emb|CBA07179.1| protein-export membrane protein SecF [Neisseria meningitidis alpha153] gi|254674007|emb|CBA09791.1| protein-export membrane protein SecF [Neisseria meningitidis alpha275] gi|308388794|gb|ADO31114.1| putative protein-export membrane protein [Neisseria meningitidis alpha710] gi|316985262|gb|EFV64213.1| protein-export membrane protein SecF [Neisseria meningitidis H44/76] gi|319409997|emb|CBY90326.1| preprotein translocase SecF subunit [Neisseria meningitidis WUE 2594] gi|325129754|gb|EGC52563.1| protein-export membrane protein SecF [Neisseria meningitidis OX99.30304] gi|325133876|gb|EGC56532.1| protein-export membrane protein SecF [Neisseria meningitidis M13399] gi|325135796|gb|EGC58408.1| protein-export membrane protein SecF [Neisseria meningitidis M0579] gi|325139840|gb|EGC62372.1| protein-export membrane protein SecF [Neisseria meningitidis CU385] gi|325144005|gb|EGC66315.1| protein-export membrane protein SecF [Neisseria meningitidis M01-240013] gi|325197821|gb|ADY93277.1| protein-export membrane protein SecF [Neisseria meningitidis G2136] gi|325200705|gb|ADY96160.1| protein-export membrane protein SecF [Neisseria meningitidis H44/76] gi|325202597|gb|ADY98051.1| protein-export membrane protein SecF [Neisseria meningitidis M01-240149] gi|325206543|gb|ADZ01996.1| protein-export membrane protein SecF [Neisseria meningitidis M04-240196] gi|325207653|gb|ADZ03105.1| protein-export membrane protein SecF [Neisseria meningitidis NZ-05/33] Length = 311 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTRGLNFSVEFTGGTVMEVQYQQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L+IGD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + I ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298 Query: 830 NAR 832 + Sbjct: 299 IGK 301 >gi|319778543|ref|YP_004129456.1| Protein-export membrane protein SecF [Taylorella equigenitalis MCE9] gi|317108567|gb|ADU91313.1| Protein-export membrane protein SecF [Taylorella equigenitalis MCE9] Length = 290 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 150/282 (53%), Gaps = 4/282 (1%) Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610 IS++ + ++ + T G N I+F GG + ++P +L +R ++ L D QN Sbjct: 1 MISLILFLLAVFFIATKGFNLSIEFTGGTLVEAKYDKPANLESIRKSISGL-YSDYQVQN 59 Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670 F ++ L+RL G + AQ E + + P + E VGP+I EL G+ Sbjct: 60 FGSAEDVLIRLPIVEGKNTAQQS--EEILSALKAQDPSVQLTRVEFVGPQIGNELYTNGL 117 Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 + + + +Y+ RF+W F++ + + D+ LGFFA F EF+LT +AA+L ++ Sbjct: 118 LAFFFVIVGICLYLAFRFEWKFSISGVVANVHDVIIILGFFAFFQWEFSLTVLAAILAVL 177 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 GYSVN+ VVV DR+R+N + + S +++I+ SI +T+ R++ T + I VL M G Sbjct: 178 GYSVNESVVVMDRIRENFRK-QRNSSVKEIINSSITQTISRTIITHGSTQIMVLAMYFLG 236 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + FA+ + GI SSIF+AA + +++ R + Sbjct: 237 GPSLHYFALALTIGIWFGIYSSIFVAAAVAMWLGIKREDMVK 278 >gi|33596109|ref|NP_883752.1| acriflavine resistance protein B [Bordetella parapertussis 12822] gi|33573112|emb|CAE36756.1| acriflavine resistance protein B [Bordetella parapertussis] Length = 1059 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 74/693 (10%), Positives = 186/693 (26%), Gaps = 43/693 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L L + ++P+ P ++ Sbjct: 8 RPVFAWVIAIVLMMAGALSIL-----SLPVAQYPNIAPPAI---------SINVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + ITL+F+ + +V L Sbjct: 54 AQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAV 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L ++ ++ + T + ++++ + + + D I + Sbjct: 114 AQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQDPISRTPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + P +L T + ++ N G + Sbjct: 174 DFQLFGAP-YAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + +I Sbjct: 233 TVIGPSRL-------------QTPEAFGRILLKVNSDGSQVRLKDVASIELGAQTYAIDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T + L+ P + S Sbjct: 280 YYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + S+ + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMSQITGALIGIAMVLAVVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ S+++S+ AI A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGRFNRTF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + +A R + + ++ + + + +G + V A Sbjct: 520 ERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQAPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ +++ + + F V G + ++ Sbjct: 580 GATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 R +R V + M Sbjct: 640 EHRAAAVAARANAKFRAELRDAQAAVFVPPAVM 672 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 85/268 (31%), Gaps = 16/268 (5%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + A V S S + ++ N N + Sbjct: 779 RMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGD 838 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A + + K I T + E + + S I + + + ++ Sbjct: 839 AMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAP----ALYAI--SLIVVFLCLAALYE 892 Query: 690 WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +++ L++ + A G+ ++ +LT IG + + +++ + ++ Sbjct: 893 -SWSIPTAVMLVVPLGVVGALLATLTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKE- 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 Y S + + + L + TS+A + V+P+A+ G + + G Sbjct: 951 --HYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGG 1008 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ +IF P+ + K R Sbjct: 1009 MLTGTFLAIFFV-PLFFVLTLRLFKVKR 1035 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 82/237 (34%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V S Q I + L +++ + + + Sbjct: 258 SQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P I + + + + + + +++ + L + + + Sbjct: 318 PPGMDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S R KS+ Sbjct: 378 GTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPRQATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G + +M + +PMA +GGS F+I + +V++ +I + Sbjct: 436 SQITGALIGIAMVLAVVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPAL 492 >gi|152991207|ref|YP_001356929.1| preprotein translocase subunit SecF [Nitratiruptor sp. SB155-2] gi|151423068|dbj|BAF70572.1| preprotein translocase subunit F [Nitratiruptor sp. SB155-2] Length = 324 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 165/295 (55%), Gaps = 3/295 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM + IS + + S L+ GLN+GIDF GG + V ++PVD++ +R L+ Sbjct: 10 YNFMGKAKLFMAISTILVLGSWALVVFKGLNFGIDFAGGTIVQVRYDKPVDIAAIRKALK 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 +I + G N + ++ + + + + + + I+ ++VGP Sbjct: 70 KSEIFQDASVTKFGSDN-EIVIRIKSSTKNLKKDIGDEARAALKGTGNF-EIRRVDMVGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL KG++ +I+ I +LIY+ IRF+W FAL ++ L+ D++ +G +LF + N Sbjct: 128 KVGGELREKGLMATVIAIIGILIYVSIRFEWRFALASVLALVHDVSIAMGAISLFNVPVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AA+LT++GYS+ND ++V+DR+R+ + +I++SI +TL R+ TS+ Sbjct: 188 LDILAAILTILGYSLNDTIIVFDRIREGIVESVKLKDLNAVINESITKTLSRTTLTSLTT 247 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY-DWRAKNARI 833 F VL + ++GG +I F+ + GIVV SSIFIA+P+L + D + A++ Sbjct: 248 FFVVLTLYLFGGEIIKGFSFTLLVGIVVGTYSSIFIASPMLTILGFDLQKYRAKL 302 >gi|300940290|ref|ZP_07154886.1| putative ATP synthase F0, A subunit [Escherichia coli MS 21-1] gi|300454854|gb|EFK18347.1| putative ATP synthase F0, A subunit [Escherichia coli MS 21-1] Length = 1037 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 76/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAQLVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 89/245 (36%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAQLVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|150021767|ref|YP_001307121.1| protein-export membrane protein SecF [Thermosipho melanesiensis BI429] gi|149794288|gb|ABR31736.1| protein-export membrane protein SecF [Thermosipho melanesiensis BI429] Length = 302 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 159/302 (52%), Gaps = 16/302 (5%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I F+ + + IS+L + S+ +F+ G N G++F GG ++ + VD S VR ++ Sbjct: 2 IDFIGKKNIFIVISLLLIVASLVSIFSKGFNLGVEFLGGSEIILSVQDNVDESFVRETIK 61 Query: 600 SLQIGDISFQNFD--------GEKNFLVRLQYQPGDSV-------AQTRVLEMVKKKITE 644 +L S + G F + + + + + +V + + E Sbjct: 62 NLAPEFESARVTQIKSIDDPKGITKFSIVVSPRDENGELRVYSGEEKEQVSNKIVELFKE 121 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 + + S+E+ V+ + +A+L+YI +RF++ F +GA+ LI D+ Sbjct: 122 KGKPAKVIGFNETSGYASQEIKNLTWKAVVFTLLAILLYITLRFQFVFGVGAVVALIHDV 181 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 TLGFF+ F E N+ A+AAVLTLIGYS+ND +VVYDR+R+N+K T S ++++ S Sbjct: 182 VITLGFFSFFNYELNVAAIAAVLTLIGYSLNDTIVVYDRIRENLKR-TRGKSIENIVNDS 240 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 IN+ + R++ TS+ FI + + ++ G+ I FA M G ++ SS++IA+P+++ Sbjct: 241 INQVIKRTINTSLTTFIVIFVLLLFSGNSIKPFAFGMTIGTIIGTYSSLYIASPVVIKWI 300 Query: 825 DW 826 Sbjct: 301 KK 302 >gi|24113798|ref|NP_708308.1| aminoglycoside/multidrug efflux system [Shigella flexneri 2a str. 301] gi|30063849|ref|NP_838020.1| aminoglycoside/multidrug efflux system [Shigella flexneri 2a str. 2457T] gi|24052882|gb|AAN44015.1| multidrug resistance protein [Shigella flexneri 2a str. 301] gi|30042104|gb|AAP17830.1| multidrug resistance protein [Shigella flexneri 2a str. 2457T] gi|281601873|gb|ADA74857.1| putative Cation/multidrug efflux pump [Shigella flexneri 2002017] gi|313650925|gb|EFS15325.1| acriflavine resistance protein D [Shigella flexneri 2a str. 2457T] gi|332755509|gb|EGJ85873.1| inner membrane protein [Shigella flexneri K-671] gi|332756613|gb|EGJ86964.1| inner membrane protein [Shigella flexneri 2747-71] gi|332766275|gb|EGJ96485.1| acrD [Shigella flexneri 2930-71] gi|333016335|gb|EGK35666.1| inner membrane protein [Shigella flexneri K-304] Length = 1037 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLTILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|62179087|ref|YP_215504.1| acridine efflux system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126720|gb|AAX64423.1| RND family, acridine efflux pump [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713548|gb|EFZ05119.1| acridine efflux system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 1049 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + +P+ L + T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + I Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + P + S Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + + I+ + + + +G V Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLDEVTDYHLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|194432053|ref|ZP_03064342.1| acriflavine resistance protein D [Shigella dysenteriae 1012] gi|194419582|gb|EDX35662.1| acriflavine resistance protein D [Shigella dysenteriae 1012] gi|332089703|gb|EGI94804.1| inner membrane protein [Shigella dysenteriae 155-74] Length = 1037 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 76/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVPQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ ++ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVSMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATIGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 81.3 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ S+ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVSMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + +E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRRLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|332704176|ref|ZP_08424264.1| protein-export membrane protein SecF [Desulfovibrio africanus str. Walvis Bay] gi|332554325|gb|EGJ51369.1| protein-export membrane protein SecF [Desulfovibrio africanus str. Walvis Bay] Length = 358 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 100/344 (29%), Positives = 160/344 (46%), Gaps = 49/344 (14%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANR 587 F +I I F+ R IS+ + + L G YGIDF GG+ + + ++ Sbjct: 1 MGFQIIKPNTNINFIGIRRIAYIISLTVILAGLGSLLVKGGPQYGIDFAGGMIVQIKFDQ 60 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IV 646 VD+ ++S L + + Q+F E ++ ++ D + T + ++ Sbjct: 61 QVDVDQLKSALGDTDLPGLVVQSFGQEDDYEFLVRTSASDIPSDTVRKRVSDALSSDLPG 120 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----------------- 689 +Q E+VGPK+ +L K + V + + + IYI RF+ Sbjct: 121 LGFEVQRLEMVGPKVGSDLRSKALEAVFYAVLIIAIYISGRFEQRWFAAIAMAAGLATGI 180 Query: 690 -----------------------------WYFALGAITTLILDITKTLGFFALFGIEFNL 720 FALGA+ L+ D+ T+G F++ G EF+L Sbjct: 181 YLLKLLGIPMAWLILAAMLITLGLCWFLKLSFALGAVIALVHDVLITVGVFSVLGKEFDL 240 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 T +AAVLT+IGYS+ND ++V+DR+R+NM F I+ SIN+TL R++ TS Sbjct: 241 TTIAAVLTIIGYSLNDTIIVFDRIRENM-KGRAREDFAATINASINQTLSRTILTSGTTL 299 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + +L + ++GG VI FA+ + GI SSIF+AAPILL Sbjct: 300 LVILCLWMFGGGVIHDFALALLVGIGTGTFSSIFVAAPILLSFG 343 >gi|332188486|ref|ZP_08390208.1| export membrane protein SecD [Sphingomonas sp. S17] gi|332011498|gb|EGI53581.1| export membrane protein SecD [Sphingomonas sp. S17] Length = 534 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 196/531 (36%), Positives = 313/531 (58%), Gaps = 14/531 (2%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W V + L+A+P+FLP+S+ +++ A+P R++LGLDL GGS+L+LE D Sbjct: 5 PRWKVASIIALLAALCLLAIPSFLPESVTNKW-GAIPHPRVNLGLDLAGGSYLLLEADTA 63 Query: 64 DFVNGFLQMYSDELRSFLK--KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D N L+ D++ + ++ I + + +++ D + +++ G Sbjct: 64 DLANSRLETMRDQVAAEMRRGNPRIDIGDISVRNGQLSFMLRDPTQVDAARERLLSITGG 123 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 ++ + + +Q ++Q I A++ + E++R+RID +G E TI Sbjct: 124 --GAGMTGQREWDIQVVDTSRFVLKPTQAGLNQAIDTAMKTATEVVRRRIDALGTKEPTI 181 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD---- 237 + GS+RI++Q+PG QDP +L+ L+G TAK+ F V + G Sbjct: 182 LQQGSNRIVVQVPGLQDPQQLKDLIGKTAKLEFKLVDTTANPVDVAKGNAPAGSQVLPYP 241 Query: 238 -----GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 V+ V ISG L A FD +T+ P V I+FD G R+F +T++N GK Sbjct: 242 GNPLGAPVIAVKRPVIISGDQLIDAQQTFDQQTNAPQVAITFDAQGGRKFARITQENTGK 301 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 P A++LDG+VL+AP IN+ I G+A ISGNFT++TA LA LR+G LPI L +VEER V Sbjct: 302 PFAIILDGQVLSAPNINEPILGGRASISGNFTVDTANQLAISLRSGKLPIDLKVVEERTV 361 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G DLG+DSI+ G A V +++FM + YG++G+ A+ ++ +NV++ LA++++L ATL Sbjct: 362 GPDLGADSIHAGILASAIAAVAVIVFMTLTYGRFGIYANIAVVINVLVILAVMAMLNATL 421 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAG VL IG AVD+N+L+NERIREE R+ +SV S+++G+ A TIF++N+T I Sbjct: 422 TLPGIAGFVLTIGTAVDANVLINERIREERRRGRSVVQSVELGYKEASRTIFEANVTHAI 481 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 + V++ G G V+GFA+ + + I S+FTA++ R ++ +R +K K+I Sbjct: 482 SGVIMLVLGSGPVKGFAVVLLIGIATSVFTAVTFTRMLVALWLRREKPKTI 532 Score = 96.7 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 71/173 (41%), Gaps = 4/173 (2%) Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP + + I GI+ I+A+A+++++ + + F + A +++++ L A+ Sbjct: 362 GPDLGADSIHAGILASAIAAVAVIVFMTLTYG-RFGIYANIAVVINVLVILAVMAMLNAT 420 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 L +A + IG +V+ V++ + + + S ++ E ++ Sbjct: 421 LTLPGIAGFVLTIGTAVDANVLINE---RIREERRRGRSVVQSVELGYKEASRTIFEANV 477 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 IS + M V G + FA+ + GI + +++ ++ Sbjct: 478 THAISGVIMLVLGSGPVKGFAVVLLIGIATSVFTAVTFTRMLVALWLRREKPK 530 >gi|218549870|ref|YP_002383661.1| multidrug efflux system protein [Escherichia fergusonii ATCC 35469] gi|218357411|emb|CAQ90050.1| multidrug efflux system protein [Escherichia fergusonii ATCC 35469] Length = 1049 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKYQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|325123439|gb|ADY82962.1| preprotein translocase subunit SecF [Acinetobacter calcoaceticus PHEA-2] Length = 321 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 4/310 (1%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 M + ++ D I FM+ SIL ++ SI + T GLN G+DF GG Sbjct: 1 MMTKVTQQDSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + +P + S V L+ D Q K+ LVR+ Q + + Sbjct: 61 VSAELNYAQPANQSEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQEVKVE---DLNNAI 117 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 K + + + + VG ++ EL + V ++ I MLIY+ IRF++ A+GA+ Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 +L DI +G FALF F+LT +AAVL +IG+S+ND +VV DR+R+N + + R Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 +++D ++ ETL R+++TSM + VL M GG + F++ M G+ V SSI+I Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296 Query: 819 ILLFIYDWRA 828 L+ R Sbjct: 297 FALWRGLNRQ 306 >gi|74312995|ref|YP_311414.1| aminoglycoside/multidrug efflux system [Shigella sonnei Ss046] gi|73856472|gb|AAZ89179.1| AcrD [Shigella sonnei Ss046] gi|323169093|gb|EFZ54770.1| inner membrane protein [Shigella sonnei 53G] Length = 1037 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGIGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|254525341|ref|ZP_05137396.1| protein-export membrane protein SecD [Stenotrophomonas sp. SKA14] gi|219722932|gb|EED41457.1| protein-export membrane protein SecD [Stenotrophomonas sp. SKA14] Length = 618 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 157/518 (30%), Positives = 271/518 (52%), Gaps = 35/518 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDL+GG H VL+VD+ ++ L Y++++RS L+ I Sbjct: 103 NLASTVPDWLANLGGRPMVLGLDLQGGVHFVLQVDQKAALDKRLDAYTEDVRSTLRDARI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ + + ++ ++ A L L D + I++ Sbjct: 163 AYQSVERRADNTIVANLSPSAGDDAAQLARTALVKAQPTLGYDV--------SGSRITVT 214 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + + I Q+ + AIEQ++ +R R++Q+G++E IQR G+ R+++QLPG QD + ++++ Sbjct: 215 IPEAEITQIANGAIEQNINTLRNRVNQLGVAEPIIQRQGADRVVVQLPGVQDTAEAKRMI 274 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATAN 260 G TA + + V+ N++ G G L+ +V ++G + GA A Sbjct: 275 GATATLEYRAVVDGNAQDAIASGRIPPEAKVYQRRDGGGPVLLNKRVIVTGDQMVGAQAV 334 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320 D + P V ++ + +G +R F+ T N+ KP+AVV RV T V++ G Sbjct: 335 TDSNSGSPAVSVTLNNVGGQRMFDFTSANVNKPMAVVYTERVPTVTVVDGQEVRGFKVNE 394 Query: 321 GNFTIE------------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 ++ A LA +L++GSL ++ VEER VG LG++++ Sbjct: 395 EVISVANINGVFGKNFQTTGLQKKEAEDLAKLLKSGSLAAPMDFVEERVVGPSLGAENVK 454 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 G A+V + ++F + Y +G++ ++ N+++ +A++S+ GAT+TLP AG+ L Sbjct: 455 NGMRAVVFAFLFTLVFFSIYYRMFGVITSIAMLFNLLIVVAVMSMFGATMTLPGFAGLAL 514 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ RA TI D+N+T LI V LF FG Sbjct: 515 SVGLSVDANVLINERIREELRAGVPGKTAIVTGYERASGTILDANLTGLIVGVALFAFGT 574 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 G ++GFA+TM + I SMFTAI++ RA+ I +K Sbjct: 575 GPLKGFALTMIIGIFASMFTAITVSRALATLIYGSRKK 612 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 91/254 (35%), Gaps = 4/254 (1%) Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635 + V+ V V E N + +Q + Sbjct: 363 NVNKPMAVVYTERVPTVTVVDGQEVRGFKVNEEVISVANINGVFGKNFQTTGLQKKEAED 422 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 K + +VGP + E ++ G+ V+ + + L++ I ++ F + Sbjct: 423 LAKLLKSGSLAAPMDFVEERVVGPSLGAENVKNGMRAVVFAFLFTLVFFSIYYRM-FGVI 481 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 ++ ++ + ++FG L A + +G SV+ V++ +R+R+ ++ Sbjct: 482 TSIAMLFNLLIVVAVMSMFGATMTLPGFAGLALSVGLSVDANVLINERIREELRAGVPGK 541 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 + I G + ++ I + + +G + FA+ M GI + ++I + Sbjct: 542 T---AIVTGYERASGTILDANLTGLIVGVALFAFGTGPLKGFALTMIIGIFASMFTAITV 598 Query: 816 AAPILLFIYDWRAK 829 + + IY R K Sbjct: 599 SRALATLIYGSRKK 612 Score = 45.8 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 26/119 (21%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W ++ ++ + L ALPN + + + RGG +V Sbjct: 2 LEFPRWKYVVILIVLALSALYALPNIYQKDPALQITAN------------RGG-----QV 44 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D D + + L K G+ + + + D + + +D + + Sbjct: 45 D---------DALRDRVMADLNKAGVTTIGAEKEGESLIVRLPDLKAQSAASDALRDTI 94 >gi|198242871|ref|YP_002216548.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937387|gb|ACH74720.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 1037 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQPLKVVEKVENYYFTHEKDNIVSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFTNE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|326624303|gb|EGE30648.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1037 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQPLKVVEKVENYYFTHEKDNIVSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 69.3 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|315452890|ref|YP_004073160.1| protein-export membrane protein SecF [Helicobacter felis ATCC 49179] gi|315131942|emb|CBY82570.1| protein-export membrane protein SecF [Helicobacter felis ATCC 49179] Length = 323 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 152/294 (51%), Gaps = 3/294 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L + FM + + S + + + L+F G N G+DF GG + V + V Sbjct: 1 MELFKRVRVLDFMSYARFTLPFSGVLVLVCVFLMFFKGFNLGVDFAGGSVVQVRFEKVVS 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ VR + + + F + ++++ + + + + + + Sbjct: 61 VAKVREVVSTQ-FKGVQVSEFGAPEEMVIKIPLLATQQNTKQDLGVQISQLLHPLGKF-E 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I+ + VGP++ EL KG++ ++++ IAM++Y+ R++W FAL + L D T Sbjct: 119 IRRLDSVGPRVGDELKEKGVLSLVLAIIAMMLYVSFRYEWRFALAGVLALAHDTLVTAVS 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 +F I+ NL +AA+LTL+GYS+ND ++++DR+R+ M L LI+++I+ TL Sbjct: 179 VIVFNIDLNLEVIAALLTLLGYSINDTIIIFDRIREGM-LARKQQDLNPLINQAISNTLS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R++ TS+ F ++ + ++G ++ F++PM G +V SSIF+A + + + Sbjct: 238 RTLLTSLTVFFVLVVLYLFGSKILIGFSLPMLVGTIVGTYSSIFLAPKLAVLLG 291 >gi|153938161|ref|YP_001392340.1| preprotein translocase subunit SecF [Clostridium botulinum F str. Langeland] gi|152934057|gb|ABS39555.1| protein-export membrane protein SecF [Clostridium botulinum F str. Langeland] gi|295320332|gb|ADG00710.1| protein-export membrane protein SecF [Clostridium botulinum F str. 230613] Length = 287 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 147/287 (51%), Gaps = 8/287 (2%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS++ + + L GLNYGIDFKGG + + + V ++ Sbjct: 7 KTKIWFSISLIIILTGMFFLIKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 ++ + N + ++ ++ VK K + + + +GP + +E Sbjct: 67 SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L RK ++ +II+ IAMLIY+ IRF++ F L AI L+ DI T+ +A+F + + + +A Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFKFGLAAILGLVHDILITVSIYAIFKLPVSSSFIA 180 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 AVLT++GYS+ND +V++DR+R+N K ++ + SI +T+ RS+ T + +++ Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANISITQTMSRSINTVLTTLFTIV 239 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + V+ I FA P+ GI+ SSIFI++P+ + + N Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTQLGNK 285 >gi|304388152|ref|ZP_07370276.1| protein-export membrane protein SecF [Neisseria meningitidis ATCC 13091] gi|304337861|gb|EFM04006.1| protein-export membrane protein SecF [Neisseria meningitidis ATCC 13091] Length = 311 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTRGLNFSVEFTGGTVMEVQYQQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L+IGD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + I ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGTALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298 Query: 830 NAR 832 + Sbjct: 299 IGK 301 >gi|292900116|ref|YP_003539485.1| aminoglycoside efflux pump [Erwinia amylovora ATCC 49946] gi|291199964|emb|CBJ47088.1| probable aminoglycoside efflux pump (acriflavine resistance protei D) [Erwinia amylovora ATCC 49946] Length = 1037 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 78/689 (11%), Positives = 189/689 (27%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L + ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGGLAII-----SLPIEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ++L+F + +V Sbjct: 50 PGASAETLENTVTQVIEQNMTGLDNLMYMSSQSSHTGQATVSLTFEAGTNPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D + + + +I++ + S + D + Sbjct: 110 QLQTALRKLPQDVQSQGVNVNKTGDTNILMVAFVSTDGSMDKQDISDYVASHLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q + DP++L TT ++ N+ G + Sbjct: 170 NGVGQVDAYGSQ-YAMRIWLDPNKLINYALTTTEVIDAIKSQNSQVAVGQLGGLPSVERQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRAITLRVNADGSVVTLGQVAQVALGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRYNGMPASGLGIKLASGANELQTDKLVRARLDELSRFFPQGLKAEIAFETSPFVQA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + + T +L G ++ ++ Sbjct: 336 SIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPREATRKSMGQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ ++++S+ AI + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAIILTPALCSTLLKPLARGHHHGRRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + W + L ++ ++ + ++ +G V Sbjct: 516 NHTFNRNAERYKRSVGKMLAKGGRWLLVYLALIAVMALLYIRLPTSFLPLEDRGLFTTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L + +E ++ ++ + + + F G+ R+ +K Sbjct: 576 QLPPGSTLQQTMAVVEKVEHYYLTHEQNNVQSVFATVGAGPGGNGQNVARLFVRLKDWHD 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 I +T K R + +V Sbjct: 636 RIGGDNTSFAIIERATKAFRRINEAKVVA 664 Score = 82.4 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 86/235 (36%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + L + + +++ +++ P Sbjct: 260 VTLGQVAQVALGAEKYDYLSRYNGMPASGLGIKLASGANELQTDKLVRARLDELSRFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + +++ + + L + + + T Sbjct: 320 GLKAEIAFETSPFVQASIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G FG N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ +PMA +GG+ F++ + +V++ +I + + Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAIILTPAL 492 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 82/248 (33%), Gaps = 8/248 (3%) Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + S + + E+ G++ + + L Sbjct: 791 NASGAMVPFTAFAHSHWENGSPRLERYDGYPALEIVGEAATGVSNGAAMDTMEQLVSQLP 850 Query: 650 TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + G + + + +S + + + + ++ W + + L + Sbjct: 851 NGIGLQWTGASLQERMTGAQAPALYALSLLVVFLCLAALYESWSIPFSVMLVVPLGVLGA 910 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 L L G+E ++ +LT++G S + +++ + + + + ++ + Sbjct: 911 LIATWLRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---INSRGSELVAATLEASRQ 967 Query: 768 TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 L + TS+A VLPMA+ G S + + G++ A +IF +++ Sbjct: 968 RLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTGVLGGMISATVLAIFFVPLFFVWVR 1027 Query: 825 DWRAKNAR 832 + Sbjct: 1028 RRFPLKDK 1035 >gi|241760395|ref|ZP_04758490.1| protein-export membrane protein SecF [Neisseria flavescens SK114] gi|319637696|ref|ZP_07992462.1| protein-export membrane protein SecF [Neisseria mucosa C102] gi|241319273|gb|EER55751.1| protein-export membrane protein SecF [Neisseria flavescens SK114] gi|317400851|gb|EFV81506.1| protein-export membrane protein SecF [Neisseria mucosa C102] Length = 311 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 165/299 (55%), Gaps = 3/299 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + VD Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ R L++L++GD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKTRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDNPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRE 297 >gi|171057035|ref|YP_001789384.1| preprotein translocase subunit SecD [Leptothrix cholodnii SP-6] gi|170774480|gb|ACB32619.1| protein-export membrane protein SecD [Leptothrix cholodnii SP-6] Length = 633 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 165/512 (32%), Positives = 274/512 (53%), Gaps = 22/512 (4%) Query: 20 LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79 I N + +S ++ +AM + LGLDLRGG H +++VD + + + +LR+ Sbjct: 104 YIVALNLISRSP--QWLTAMRALPMYLGLDLRGGVHFLMQVDMKAALTKKAESLTGDLRA 161 Query: 80 FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139 L+ + I + + + + + D+ + + D T Sbjct: 162 LLRDKSIRHAGIVRNGDGVEVRLRDAPTQARALALLREQ--------QPDLLWVESTDGT 213 Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199 E +++ L +V A+ Q++ + RI+++G++E IQ+ G R+++QLPG QD Sbjct: 214 EFKLAGTLKPEAARKVQEQAVTQNINTLHNRINELGVAEPVIQQQGLDRVVVQLPGVQDV 273 Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------DGNQYLVEDKVEISGI 252 ++ + ++G TA + V + + + G + +V+ +V ++G Sbjct: 274 AKAKDIIGRTATLEVRLVDDSTEAQAALSGGGPVPFGTERYTERGARAIIVKRQVILTGE 333 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308 +L A A FD +P V ++ D GAR F +VTR+NI K + G V+TAPVI Sbjct: 334 NLTDAQAGFDENQ-QPAVHLTLDARGARIFRDVTRENINKRMAILLFEKGKGEVVTAPVI 392 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 I G+ QISG+ + + A +LRAGSL + I+EER +G LG+++I KG ++ Sbjct: 393 RSEIGGGRVQISGSMSPVESADTALLLRAGSLAAPMEIIEERLIGPSLGAENIAKGFDSV 452 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428 + G V I +FM Y +G+ + S+ +N++L +A+LS++ ATLTLP IA I L +G+A+ Sbjct: 453 LYGFVAIAIFMCCYYLLFGVFSTLSLGVNLLLLVAVLSMMQATLTLPGIAAIALVLGMAI 512 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 D+N+L+NER+REE R S ++ G+ RA++TI DSN+T LIA + L FG G VRGF Sbjct: 513 DANVLINERVREELRAGASPQMAIHTGYERAFATILDSNVTTLIAGLALLAFGSGPVRGF 572 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 A+ L IL SMF+A+ R ++ KK Sbjct: 573 AVVHCLGILTSMFSAVMFSRGLVNLWYGRKKK 604 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 87/212 (41%), Gaps = 4/212 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I ++GP + E I KG V+ +A+ Sbjct: 401 VQISGSMSPVESADTALLLRAGSLAAPMEIIEERLIGPSLGAENIAKGFDSVLYGFVAIA 460 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 I++ + F + + +L +++ + ++ L +AA+ ++G +++ V++ Sbjct: 461 IFMCCYY-LLFGVFSTLSLGVNLLLLVAVLSMMQATLTLPGIAAIALVLGMAIDANVLIN 519 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ S + I + +++ I+ L + +G + FA+ Sbjct: 520 ERVREELRA---GASPQMAIHTGYERAFATILDSNVTTLIAGLALLAFGSGPVRGFAVVH 576 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 GI+ + S++ + ++ Y + K ++ Sbjct: 577 CLGILTSMFSAVMFSRGLVNLWYGRKKKLQKV 608 Score = 38.5 bits (87), Expect = 4.3, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 25/120 (20%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ +G L LPNF ++ ++V Sbjct: 3 RYPWWKYLILAIAVLVGSLYTLPNFFGEAPA-------------------------VQVS 37 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 ++ L G+ ++ + F D+ + D V L Sbjct: 38 SGKATVKVDASLVPRVQQALAGAGLSPDFVQLEGLSVRARFGDTDTQLKARDAVVKALNP 97 >gi|310768297|gb|ADP13247.1| Acriflavine resistance protein B [Erwinia sp. Ejp617] Length = 1037 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 76/689 (11%), Positives = 189/689 (27%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L + ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGGLAIV-----SLPIEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TL+F + +V Sbjct: 50 PGASAETLENTVTQVIEQNMTGLDNLMYMSSQSSHTGQATVTLTFEAGTNPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D + + + +I++ + + + D + Sbjct: 110 QLQTALRKLPQDVQAQGVNVNKTGDTNILMVAFVSTDGSMDKQDIADYVASHLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q + DP++L TT ++ N+ G D Sbjct: 170 NGVGQVDAYGSQ-YAMRIWLDPNKLINYALTTTEVVDAIKSQNSQVAVGQLGGLPSVDRQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRAITLKVNADGSVVTLGQVAQVALGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRYNGMAASGLGIKLASGANELQTDKLVRARLDELSRFFPHGLQAEIAFETSPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + + T +L G ++ ++ Sbjct: 336 SIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPRDATRKSMGQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCCTLLKPLAMGHHHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + ++ W V L ++ ++ + ++ +G V Sbjct: 516 NRTFNHNAERYKRGVGRMLVKGGRWLVVYLALIAVMALLFMRLPTSFLPLEDRGLFTTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L + +E ++ ++ + + + F G+ R+ +K Sbjct: 576 QLPPGSTLQQTMTVVEKVEHYYLTHEQDNVQSVFATVGAGPGGNGQNVARLFVRLKDWQN 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + +T K + +V Sbjct: 636 RLGSDNTSFAIIDRATKAFSRINEAKVVA 664 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + L + + +++ +++ P Sbjct: 260 VTLGQVAQVALGAEKYDYLSRYNGMAASGLGIKLASGANELQTDKLVRARLDELSRFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + +++ + + L + + + T Sbjct: 320 GLQAEIAFETSPFVKASIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G FG N + A++ IG V+D +VV + + + +S RD KS+ + Sbjct: 380 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPRDATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +GG+ F++ + +V++ ++ + + + Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCCTLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 72.8 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 76/212 (35%), Gaps = 8/212 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G+S A + + L + G + + + +S + + + + Sbjct: 827 GESAAGVSNGAAMDMMEKLVSQLPNGIGLQWTGASLQERMTGAQAPALYALSLLVVFLCL 886 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L L G+E ++ +LT++G S + +++ + Sbjct: 887 AALYESWSIPFSVMLVVPLGVLGALIATWLRGLENDVYFQVGLLTVVGLSAKNAILIVEF 946 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + + + ++ + L + TS+A VLPMA+ G S + Sbjct: 947 ANE---INSRGSELMAATLEAARQRLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTG 1003 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + G++ A +IF + + + Sbjct: 1004 VLGGMISATVLAIFFVPLFFVLVRRRFPLKDK 1035 >gi|238759422|ref|ZP_04620586.1| Acriflavine resistance protein B [Yersinia aldovae ATCC 35236] gi|238702319|gb|EEP94872.1| Acriflavine resistance protein B [Yersinia aldovae ATCC 35236] Length = 1038 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 80/685 (11%), Positives = 194/685 (28%), Gaps = 47/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G+L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIILCLTGVLAI-----STLPIEQYPNLAPP-------------NVRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S ITL+F +V Sbjct: 50 PGASAKTLENTVTQVIEQSMTGLDSLLYMSSQSSNSGSASITLTFQAGTDPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + ++++ + + + D + Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT + N+ G D+ Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E A L + Sbjct: 276 DYLSRFNGQAASGMSIKLASGANELQTDERVKARIAELSPFFPHGLEAKIAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIKDVVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + + + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531 + FFGG R F+IT+ ++++S+ A+ + A+ + F Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAPGHHHAKRGFFGWF 515 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG----VLANR 587 + D A ++ + + S F + + LL L + + L +A Sbjct: 516 NRMFDRNAHRYEKGVARVLHHSARFMLLYLLLLGGLALLFLKLPTSFLPLEDRGVFMAQV 575 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + ++ + N L + + + ++ + Sbjct: 576 QLPVGSTQQQTLKVVENVENYFLTQEQNNVLSVFSTVGSGPGGNGQNVARLFIRLADWDK 635 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + + K I Sbjct: 636 RTDSNDSSFAIIERATKAFNKIIEA 660 Score = 85.1 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 86/235 (36%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + ++ +++ P Sbjct: 260 VTLGDVAKIEMGAEKYDYLSRFNGQAASGMSIKLASGANELQTDERVKARIAELSPFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + +I + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + + R+ KS+ + Sbjct: 380 FAILSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ +PMA +GG+ F+I + +V++ ++ + + Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 71.6 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNGKGKDLVEATLEASRLRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPM + G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFAFGVLPMTISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029 >gi|188990876|ref|YP_001902886.1| RND superfamily export protein [Xanthomonas campestris pv. campestris str. B100] gi|167732636|emb|CAP50830.1| RND superfamily export protein [Xanthomonas campestris pv. campestris] Length = 1044 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 70/688 (10%), Positives = 178/688 (25%), Gaps = 48/688 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L + ++PS P + + + Sbjct: 8 RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPA-------------VAITANY 49 Query: 63 DDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 + ++ L + ITL+F + + +V Sbjct: 50 PGASAQTLEDTVTQVIEQKMKGLDNLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L + L + ++ + T + + + + S + + I Sbjct: 110 KLSLATALLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + N G + Sbjct: 170 QGVGDTTLFGSQYSM-RIWLDPDKLNNFNLTPVDVRAAIQAQNAQVSAGQLGALPAVANQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + I Sbjct: 229 QLNATITAQTRL-------------KTAEEFENILLRTRTDGSQVRLRDVARIELGSESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T+ P Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +L++ G T+ ++ Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + Q S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEQLSPKEATRKSMDQITGALVGVALVLAAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDIN 526 + FFGG R F+IT+ ++ +S+ A+ + A+ +++ + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMTLSVLVAMVLTPALCATLLKPGHGMATTGFFGWFNRV 515 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + + + + ++ ++ + + T + +G + + V Sbjct: 516 FDRSNGRYQGVVRHMLGKGWRYMIAYVVIVALVVVGFMKTPVGFLPDEDQGTLFVLVQLP 575 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + + L+ ++ + Q F V G ++ Sbjct: 576 PGATDARTGAVLKQVEHHFLVDQKDSVAGIFAVSGFSFAGTGQNVGFAFVKLRPWGERTG 635 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674 ++ + L + V Sbjct: 636 KGQSVTDVAAKAGAFFATLRDAQVFAVA 663 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 91/248 (36%), Gaps = 6/248 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 V L V + + + L +++ R ++ ++ Sbjct: 253 TRTDGSQVRLRDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEE 312 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700 + P R I + + ++ + + + + +++ + + L + Sbjct: 313 QEKFFPPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAV 372 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + + T G A+FG N + A++ IG V+D +VV + + + +S ++ Sbjct: 373 PVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEQLSPKEA 430 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817 KS+++ G V ++ +PMA +GGS F+I + + ++ ++ + Sbjct: 431 TRKSMDQITGALVGVALVLAAVFVPMAFFGGSTGVIYRQFSITIVSAMTLSVLVAMVLTP 490 Query: 818 PILLFIYD 825 + + Sbjct: 491 ALCATLLK 498 Score = 67.4 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 63/170 (37%), Gaps = 9/170 (5%) Query: 668 KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 G G++ +++++ + W I + L + TL L ++ Sbjct: 866 TGQTGLLYGLSILIVFLCLAALYESWSIPFSVILVVPLGVFGTLVAAVLTWKMNDVYFQV 925 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 +LT IG + + +++ + ++ L+ S ++ L + TS+A + V+ Sbjct: 926 GLLTTIGLASKNAILIVEFAKE---LHEGGKSLVVAALEAARMRLRPILMTSLAFILGVV 982 Query: 785 PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 P+ + G + + G++ +IF + + + A Sbjct: 983 PLVLTSGAGAGAQHALGTAVIGGMISGTVLAIFFVPLFFVLVRGLFERRA 1032 >gi|50123051|ref|YP_052218.1| aminoglycoside/multidrug efflux system [Pectobacterium atrosepticum SCRI1043] gi|49613577|emb|CAG77028.1| probable aminoglycoside efflux pump [Pectobacterium atrosepticum SCRI1043] Length = 1040 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 80/689 (11%), Positives = 191/689 (27%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L L+++P P + + Sbjct: 8 RPIFAWVLAILLSLCGMLAI-----KSLPLEQYPDLAPP-------------SVRITASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +I L+F + +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLMYMSSDSSNTGQARIMLTFEAGTDPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + +I++ + S + + I Sbjct: 110 QLQSATRKLPQDVQQQGVTVSKTGDTNILMVAFVSTDGSMDKQDISDYVATNIQEPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L TT+ + N+ G D+ Sbjct: 170 SGVGEVDSYGSQ-YAMRIWLDPAKLMDYSLTTSDVVRAIESQNSQVSVGQVGGVPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSAVTLANVAEVELGAERY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DFLSRFNGQAASGLGVKLASGANELETDKRVRERIEELSHYFPHGLEAKIAFETSPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G +L ++ Sbjct: 336 SITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGFSLNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQVQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--KKMKSIDINPLSRF 531 + FFGG R F+IT+ S+++S+ A+ + A+ +++ K F Sbjct: 456 MAFFGGTTGAIYRQFSITIVTSMILSVLVAMILTPALCATLLKPLAKGQHHGRKGFFGWF 515 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY--------GIDFKGGIQLGV 583 ++ + R + S + + + ++ + + +G V Sbjct: 516 NRSFTRTSLGYERGVGKILVNSGRWLLLYMGIIGIMAFLFFRLPTSFLPQEDRGVFTTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + ++ ++ + F G+ R+ +K Sbjct: 576 QLPPGATQQQTLQVVNKIEQYYLTQEKDTVTSVFSTIGSGPGGNGQNVARLFVSLKDWNE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 P S+ K R++ + Sbjct: 636 RTTPESSSFAVIERATKEFRKIKEARVFA 664 Score = 79.3 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L+ V + D + + L + + + + ++++ P Sbjct: 260 VTLANVAEVELGAERYDFLSRFNGQAASGLGVKLASGANELETDKRVRERIEELSHYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAFETSPFVKASITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FAVLYAFGFSLNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +GG+ F+I + ++++ ++ + + + Sbjct: 438 VQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSITIVTSMILSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 65.9 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 68/187 (36%), Gaps = 8/187 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G + L + IS + + + + ++ W + + + + L Sbjct: 853 FGVEWTGMSLQERLSGAQAPALYAISLLVVFLCLAALYESWTVPFSVMLVVPMGVLGALV 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 G+E ++ +LT++G S + +++ + + + + ++ + L Sbjct: 913 ATWARGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---MNQKGKDLVEATLEASRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA G + + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVIGGMLAATFLAIFFVPLFFVVVRRR 1029 Query: 827 RAKNARI 833 ++ Sbjct: 1030 FPLKEKV 1036 >gi|107099412|ref|ZP_01363330.1| hypothetical protein PaerPA_01000424 [Pseudomonas aeruginosa PACS2] Length = 1033 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 73/680 (10%), Positives = 183/680 (26%), Gaps = 44/680 (6%) Query: 9 ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68 ++ +I G L L ++++P+ P + + V Sbjct: 1 MIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGASAETVQD 46 Query: 69 FLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLN 127 + ++ + + + IT++F + +V LQ L Sbjct: 47 TVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQLATPLLP 106 Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187 + ++ + T + +++ + S I+ D + ++ Sbjct: 107 QEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVGDFQVFG 166 Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247 DP++L T +S N G + K Sbjct: 167 SQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNATIIGKT 225 Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307 + + + + ++G Sbjct: 226 RL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINAQFNGSP 272 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 + + T + A L + S T Sbjct: 273 ASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHEVVKTLG 332 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427 LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+VL IGL Sbjct: 333 EAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVLAIGLL 392 Query: 428 VDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG--- 483 VD I+V E + + S + + + + + + FFGG Sbjct: 393 VDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGSTGV 452 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDINPLSRFF 532 R F+IT+ ++ +S+ A+ + A+ + + + LS Sbjct: 453 IYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRMFLSTTH 512 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 +A + + ++ + + +G + V Sbjct: 513 GYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAE 572 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 + ++S++ + ++ F V G + M+K +++ Sbjct: 573 RTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPGGENSVF 632 Query: 653 NTEIVGPKISRELIRKGIVG 672 + Sbjct: 633 ELAKRAQMHFFSFKDAMVFA 652 Score = 79.3 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q I+ Q + + +++ + + + + Sbjct: 245 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 304 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + Sbjct: 305 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 364 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S R+ KS+ Sbjct: 365 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 422 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M LPMA +GGS F+I + + ++ ++ + + Sbjct: 423 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 479 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + + G + ++G + + PG S K Sbjct: 777 VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 836 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + + L Sbjct: 837 LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 893 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L ++ G+ ++ +LT IG S + +++ + ++ L+ + Sbjct: 894 GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 950 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814 ++ L V TS+A + V+P+A+ G + + G+V A +IF Sbjct: 951 EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1005 >gi|330503889|ref|YP_004380758.1| acriflavin resistance protein [Pseudomonas mendocina NK-01] gi|328918175|gb|AEB59006.1| acriflavin resistance protein [Pseudomonas mendocina NK-01] Length = 1022 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 73/584 (12%), Positives = 165/584 (28%), Gaps = 39/584 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ +GL+ + + +P+ + Sbjct: 9 RRPVFATVLSLIVVLLGLMA-----YDRLNVREYPNIDVPIVT---------VQVTYPGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + +++ S ++ R +IT F R + A+ V L Sbjct: 55 SPEIMESQVAQPVEDVLSGIEGLDFVTSISRAENTQITAQFRLGRSADEAANDVRDRLGR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 V S L + + ++ ++ + A+E + + R D++ Sbjct: 115 VRSLLPDEVDEPIVQKVEADAQPVIWIAFHSQ--QHSAMEITDLLERVIKDRLQTIPGVS 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP +L T + N R S ++ Sbjct: 173 EVQVRGARTFSMRIWLDPEKLAAHNLTVQDVEDALRRQNVEIPAGRIESREREFSVLSET 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ D+ Sbjct: 233 DLRTP--------------------QQFNELILDDSQGYLLRLSDVGRAEIGPRDERSVV 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +A + + ++A V N S Sbjct: 273 RFNGLPAVTLGLVKQATANPLDISDGLQAAWPEIKALLPDGMKMTVANDNSQFIRESIDN 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++++F+ + + L+ +I +++I AL+SL+G T+ ++ +V Sbjct: 333 VFTTIWEAVALVILIIFIFLRSLRATLIPLVTIPVSLIGAFALMSLMGFTINTLTLLAMV 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480 L IGL VD I++ E I + G + +T + F Sbjct: 393 LAIGLVVDDAIVMLENIHRHIEAGMKPMQAAFKGSREIAFAVIAMTLTLAAVFAPIGFMQ 452 Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G FA T+ S+L+S F A+++ M ++R + + + + + Sbjct: 453 GTTGKLFTEFAWTLAGSVLVSGFVALTLTPMMCAVLLRSHQQEPRHGRVYNLIEGFLNSL 512 Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + L + +G Sbjct: 513 TYSYKHSLERALQAWPLVLGVLLAAFVLCAWLFGGLRSELAPTE 556 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 72/212 (33%), Gaps = 12/212 (5%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 S +K + + + ++ + + + V + + + I++ Sbjct: 296 SDGLQAAWPEIKALLPDGMKMTVANDNSQFIRESIDNVFTTIWEAVALVILIIFIFL--- 352 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 L + T+ + + +L G N + A++ IG V+D +V+ + + Sbjct: 353 RSLRATLIPLVTIPVSLIGAFALMSLMGFTINTLTLLAMVLAIGLVVDDAIVMLENIH-- 410 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804 + + K E + ++ P+ G+ FA +A Sbjct: 411 -RHIEAGMKPMQAAFKGSREIAFAVIAMTLTLAAVFAPIGFMQGTTGKLFTEFAWTLAGS 469 Query: 805 IVVAASSSIFIAA---PILLFIYDWRAKNARI 833 ++V+ ++ + +LL + ++ R+ Sbjct: 470 VLVSGFVALTLTPMMCAVLLRSHQQEPRHGRV 501 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 69/166 (41%), Gaps = 7/166 (4%) Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 ++ ++ + + + +F+ + L + ++ L + L LFG +N+ + ++T Sbjct: 852 LLIFALALAFIFLVLAAQFESFSDPLIILFSVPLSMAGALLALKLFGGTWNIYSQIGLVT 911 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 LIG +++ + L + R+ + ++ + L + T+ A + LP+A+ Sbjct: 912 LIGLITKHGILIVEFAN---HLLREGKALRESVIEASVQRLRPILMTTGAMVLGSLPLAI 968 Query: 789 ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G + + G++V ++++ + L + W Sbjct: 969 ATGAGAESRQQIGLVIVGGLLVGTFFTLYVIPTLYLLLRRWAPLRK 1014 >gi|15802992|ref|NP_289022.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7 EDL933] gi|168748479|ref|ZP_02773501.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4113] gi|168756234|ref|ZP_02781241.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4401] gi|168768554|ref|ZP_02793561.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4486] gi|168773624|ref|ZP_02798631.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4196] gi|168778428|ref|ZP_02803435.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4076] gi|168787808|ref|ZP_02812815.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC869] gi|168798833|ref|ZP_02823840.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC508] gi|195936611|ref|ZP_03081993.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7 str. EC4024] gi|208807883|ref|ZP_03250220.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4206] gi|208814105|ref|ZP_03255434.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4045] gi|208819992|ref|ZP_03260312.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4042] gi|209398035|ref|YP_002271938.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4115] gi|254794414|ref|YP_003079251.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7 str. TW14359] gi|261223098|ref|ZP_05937379.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7 str. FRIK2000] gi|261259350|ref|ZP_05951883.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7 str. FRIK966] gi|12516848|gb|AAG57579.1|AE005476_4 sensitivity to acriflavine, integral membrane protein, possible efflux pump [Escherichia coli O157:H7 str. EDL933] gi|187770716|gb|EDU34560.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4196] gi|188017113|gb|EDU55235.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4113] gi|189003570|gb|EDU72556.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4076] gi|189356565|gb|EDU74984.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4401] gi|189362336|gb|EDU80755.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4486] gi|189372363|gb|EDU90779.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC869] gi|189378628|gb|EDU97044.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC508] gi|208727684|gb|EDZ77285.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4206] gi|208735382|gb|EDZ84069.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4045] gi|208740115|gb|EDZ87797.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4042] gi|209159435|gb|ACI36868.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4115] gi|209763778|gb|ACI80201.1| aminoglycoside efflux pump [Escherichia coli] gi|209763780|gb|ACI80202.1| aminoglycoside efflux pump [Escherichia coli] gi|209763782|gb|ACI80203.1| aminoglycoside efflux pump [Escherichia coli] gi|209763786|gb|ACI80205.1| aminoglycoside efflux pump [Escherichia coli] gi|254593814|gb|ACT73175.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7 str. TW14359] gi|320188801|gb|EFW63460.1| putative aminoglycoside efflux pump [Escherichia coli O157:H7 str. EC1212] gi|320640973|gb|EFX10457.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7 str. G5101] gi|320646255|gb|EFX15182.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H- str. 493-89] gi|320651761|gb|EFX20141.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H- str. H 2687] gi|320667792|gb|EFX34703.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7 str. LSU-61] gi|326340264|gb|EGD64068.1| putative aminoglycoside efflux pump [Escherichia coli O157:H7 str. 1125] Length = 1037 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATAEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATAEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|240122867|ref|ZP_04735823.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID332] gi|268681490|ref|ZP_06148352.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID332] gi|268621774|gb|EEZ54174.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID332] Length = 311 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 167/303 (55%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTRGLNFSVEFTGGTVMEVQYQQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L++GD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKMRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + I ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVNNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALRGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298 Query: 830 NAR 832 A+ Sbjct: 299 IAK 301 >gi|16763855|ref|NP_459470.1| acridine efflux pump [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161615329|ref|YP_001589294.1| hypothetical protein SPAB_03099 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167990460|ref|ZP_02571560.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231464|ref|ZP_02656522.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237590|ref|ZP_02662648.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240305|ref|ZP_02665237.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168465570|ref|ZP_02699452.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818910|ref|ZP_02830910.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446686|ref|YP_002039718.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449416|ref|YP_002044509.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470936|ref|ZP_03076920.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736378|ref|YP_002113506.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249604|ref|YP_002145456.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264579|ref|ZP_03164653.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198246140|ref|YP_002214428.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390115|ref|ZP_03216726.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207855954|ref|YP_002242605.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238911395|ref|ZP_04655232.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16418982|gb|AAL19429.1| RND family, acridine efflux pump [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161364693|gb|ABX68461.1| hypothetical protein SPAB_03099 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405349|gb|ACF65571.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407720|gb|ACF67939.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457300|gb|EDX46139.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711880|gb|ACF91101.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631676|gb|EDX50196.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213307|gb|ACH50704.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242834|gb|EDY25454.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289507|gb|EDY28870.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940656|gb|ACH77989.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602560|gb|EDZ01106.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205330914|gb|EDZ17678.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334152|gb|EDZ20916.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340025|gb|EDZ26789.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343984|gb|EDZ30748.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206707757|emb|CAR32042.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245757|emb|CBG23554.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992191|gb|ACY87076.1| acridine efflux pump [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157085|emb|CBW16569.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320084749|emb|CBY94539.1| Toluene efflux pump membrane transporter ttgB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226052|gb|EFX51103.1| RND efflux system, inner membrane transporter CmeB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614751|gb|EFY11680.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618858|gb|EFY15746.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623565|gb|EFY20404.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629136|gb|EFY25915.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631857|gb|EFY28611.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637406|gb|EFY34108.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642091|gb|EFY38701.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322652347|gb|EFY48702.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653250|gb|EFY49583.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660601|gb|EFY56837.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664753|gb|EFY60946.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669194|gb|EFY65344.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670739|gb|EFY66872.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679022|gb|EFY75077.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682051|gb|EFY78076.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685120|gb|EFY81117.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323128794|gb|ADX16224.1| acridine efflux pump [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192986|gb|EFZ78209.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196932|gb|EFZ82074.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203917|gb|EFZ88934.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206998|gb|EFZ91951.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214201|gb|EFZ98959.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214475|gb|EFZ99226.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219183|gb|EGA03680.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226981|gb|EGA11162.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230201|gb|EGA14321.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233939|gb|EGA18028.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238367|gb|EGA22425.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244054|gb|EGA28063.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246640|gb|EGA30614.1| multidrug efflux system protein AcrB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251841|gb|EGA35704.1| multidrug efflux system protein AcrB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257837|gb|EGA41516.1| multidrug efflux system protein AcrB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261149|gb|EGA44741.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264921|gb|EGA48420.1| multidrug efflux system protein AcrB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272484|gb|EGA55891.1| multidrug efflux system protein AcrB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622175|gb|EGE28520.1| acridine efflux pump [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987424|gb|AEF06407.1| acridine efflux pump [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 1049 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + +P+ L + T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + I Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + P + S Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + + I+ + + + +G V Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|167991784|ref|ZP_02572883.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205329869|gb|EDZ16633.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|267994591|gb|ACY89476.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|332989409|gb|AEF08392.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 1037 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFPHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 69.3 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIRRRFPLKPR 1035 >gi|224582312|ref|YP_002636110.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466839|gb|ACN44669.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 1049 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + +P+ L + T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + I Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + P + S Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + + I+ + + + +G V Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGIFLTMVQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|312911507|dbj|BAJ35481.1| acriflavine resistance protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 1049 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + +P+ L + T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + I Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + P + S Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRL 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + + I+ + + + +G V Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|258404974|ref|YP_003197716.1| protein-export membrane protein SecF [Desulfohalobium retbaense DSM 5692] gi|257797201|gb|ACV68138.1| protein-export membrane protein SecF [Desulfohalobium retbaense DSM 5692] Length = 359 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 160/338 (47%), Gaps = 48/338 (14%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVD 590 LI A+ F+ R + +S L + + L G YGIDF GGI + V Sbjct: 4 QLIKPGTAVNFIGRRKIALVVSALVLLLGLGSLLLKGGPKYGIDFAGGITVQTQFAADVS 63 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +++ L + ++ ++ Q F E + D + + + E+ Sbjct: 64 LKDIKAALATAELPSLNVQKFGTEGGNEYLFRVAAVDISSSEVRQAVQEALSAEMDTGFE 123 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--------------------- 689 I+ E+VGPK+ +L K + + + + + IYI RF+ Sbjct: 124 IRRLEMVGPKVGADLRAKALEALFYAILIISIYISGRFEHRWLASALMAGGLAGGLYVLQ 183 Query: 690 -------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 FALGA+ LI D+ T+G F+L EF+L+ VA Sbjct: 184 IAGFPLSALVVAALVIAVGMCWYLKLNFALGAVIALIHDVLVTVGVFSLLNKEFDLSIVA 243 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMK-LYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 A+LT+IGYS+ND ++V+DR+R+N++ S ++ I+ SIN+TL R++ TS + V Sbjct: 244 ALLTIIGYSLNDTIIVFDRIRENLRGKAAKHRSLKETINISINQTLSRTILTSGTTLLVV 303 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + + ++GG VI +FA + G++V SSIF+A+P+LL Sbjct: 304 ISLFLFGGGVIHNFAFALLVGVIVGTYSSIFVASPLLL 341 >gi|261379740|ref|ZP_05984313.1| protein-export membrane protein SecF [Neisseria subflava NJ9703] gi|284797416|gb|EFC52763.1| protein-export membrane protein SecF [Neisseria subflava NJ9703] Length = 311 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 165/299 (55%), Gaps = 3/299 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + VD Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLITKGLNFSVEFTGGTVMEVQYQQGVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ R L++L++GD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKTRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDNPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRE 297 >gi|170683475|ref|YP_001744652.1| aminoglycoside/multidrug efflux system [Escherichia coli SMS-3-5] gi|170521193|gb|ACB19371.1| acriflavine resistance protein D [Escherichia coli SMS-3-5] Length = 1037 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 78/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + I Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATIEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGMPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATIEMGAEKYDYLSRFNGMPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|24372776|ref|NP_716818.1| preprotein translocase subunit SecD [Shewanella oneidensis MR-1] gi|24346857|gb|AAN54263.1|AE015563_3 protein-export membrane protein SecD [Shewanella oneidensis MR-1] Length = 618 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 163/526 (30%), Positives = 275/526 (52%), Gaps = 23/526 (4%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 + ++ P L +++ PS + I LGLDLRGG +L+VD Sbjct: 99 TLVSSMVIEPKELTLALVSAAPSWLQNLGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQAD 158 Query: 72 MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 + LR FL+++ I S+R + ++ + + A + + Sbjct: 159 ALVESLRQFLREQQIRGASVRIDNTRDDVALQIAIALSDAAQ-ADNSARAAVRQFIQQSY 217 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 +T + + I LSQ+ ++ + ++Q+++I+R RI+++GI+E+ +QR G HRI I Sbjct: 218 PTWQLTNADNGLVIKLSQDEQSKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRI 277 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251 +LPG QDP+ + ++G TA ++F +V + L+D GN V + G Sbjct: 278 ELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAQVLKDKSGNPVYVARSPVLGG 332 Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP----- 306 H+ A AN V+I D +G ++ E +R NIGKP+A Sbjct: 333 DHIVDARANIGEMGM-AEVNIHLDRIGGQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQ 391 Query: 307 -------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ + +I+G T + A LA +LRAGS+ + IVEER +G LG++ Sbjct: 392 TQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAE 451 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIA 418 +I G A+ G+ + +LFM + Y + G VA+ ++ N+++ LL+L+ A LTLP IA Sbjct: 452 NIENGFAALGLGMGITLLFMALWYRRLGWVANVALISNMVILFGLLALIPGAVLTLPGIA 511 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 G+VL +G+AVD+N+L+ ERI+++ ++ +S ++D GF A+STIFD+N T +I VVL+ Sbjct: 512 GLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLY 571 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G G ++GFA+T+GL +L SMFT I RA++ + + + Sbjct: 572 SIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVR 617 Score = 122 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 92/260 (35%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G + + S + + + ++ L G Q Sbjct: 359 GQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 418 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I G + + L+++ + ++ Sbjct: 419 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 477 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R++ +K Sbjct: 478 LGWVANVALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 537 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID + + I+ + + G I FA+ + G++ + Sbjct: 538 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 594 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + ++ +Y A+ Sbjct: 595 TGIFASRALINLVYGRDARR 614 >gi|145640163|ref|ZP_01795747.1| preprotein translocase subunit SecD [Haemophilus influenzae R3021] gi|145274749|gb|EDK14611.1| preprotein translocase subunit SecD [Haemophilus influenzae 22.4-21] Length = 616 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + S N + GLDLRGG ++EVD + + + D LR L+KE I +++ Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169 Query: 93 QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + ++ A+ + + + I++ LS Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278 Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V N + D G+ + + + G H+ +++ D + Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 P V ++ D G + T+ KP+A + Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q QI+G +I A L+ +L++G+L + IVEER +G LG+ ++ +G A Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GLV ++ FM+ Y +G++A F++ +N++L + L+S+L ATL++P IAGIVL +G++ Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ ERI+EE R +S+ +++ G++ A+++IFD+N+T ++ ++L+ G G ++G Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 578 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 FAIT+ L + ISMFTAI+ RA++ + K++K + Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +GI + +A++ ++ +K F + A L+++I +G ++ Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G SV+ V++++R+++ ++ S + I++ N Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G I FAI ++ G+ ++ ++I ++ +Y + Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613 Score = 40.8 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ I IG+L +LPN + + G+ Sbjct: 4 RYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQI----------------SGTR------ 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + L D L++ + S+ I F ++ + DK+T L Sbjct: 42 GQEANTSVLGQVQDVLKT----NNLPTKSIVLENGSILARFTNTDDQLLAKDKITERL 95 >gi|68248848|ref|YP_247960.1| preprotein translocase subunit SecD [Haemophilus influenzae 86-028NP] gi|145631086|ref|ZP_01786861.1| preprotein translocase subunit SecD [Haemophilus influenzae R3021] gi|145632484|ref|ZP_01788218.1| preprotein translocase subunit SecD [Haemophilus influenzae 3655] gi|145635146|ref|ZP_01790851.1| preprotein translocase subunit SecD [Haemophilus influenzae PittAA] gi|229844943|ref|ZP_04465080.1| preprotein translocase subunit SecD [Haemophilus influenzae 6P18H1] gi|229846328|ref|ZP_04466436.1| preprotein translocase subunit SecD [Haemophilus influenzae 7P49H1] gi|68057047|gb|AAX87300.1| protein-export membrane protein SecD [Haemophilus influenzae 86-028NP] gi|144983371|gb|EDJ90853.1| preprotein translocase subunit SecD [Haemophilus influenzae R3021] gi|144986679|gb|EDJ93231.1| preprotein translocase subunit SecD [Haemophilus influenzae 3655] gi|145267567|gb|EDK07566.1| preprotein translocase subunit SecD [Haemophilus influenzae PittAA] gi|229810421|gb|EEP46139.1| preprotein translocase subunit SecD [Haemophilus influenzae 7P49H1] gi|229812077|gb|EEP47769.1| preprotein translocase subunit SecD [Haemophilus influenzae 6P18H1] gi|309972615|gb|ADO95816.1| General secretory pathway component SecD [Haemophilus influenzae R2846] Length = 616 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + S N + GLDLRGG ++EVD + + + D LR L+KE I +++ Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169 Query: 93 QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + ++ A+ + + + I++ LS Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278 Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V N + D G+ + + + G H+ +++ D + Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 P V ++ D G + T+ KP+A + Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q QI+G +I A L+ +L++G+L + IVEER +G LG+ ++ +G A Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GLV ++ FM+ Y +G++A F++ +N++L + L+S+L ATL++P IAGIVL +G++ Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ ERI+EE R +S+ +++ G++ A+++IFD+N+T ++ ++L+ G G ++G Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 578 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 FAIT+ L + ISMFTAI+ RA++ + K++K + Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +GI + +A++ ++ +K F + A L+++I +G ++ Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G SV+ V++++R+++ ++ S + I++ N Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G I FAI ++ G+ ++ ++I ++ +Y + Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613 >gi|293611111|ref|ZP_06693410.1| predicted protein [Acinetobacter sp. SH024] gi|292826763|gb|EFF85129.1| predicted protein [Acinetobacter sp. SH024] Length = 321 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 4/310 (1%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 M + ++ D I FM+ SIL ++ SI + T GLN G+DF GG Sbjct: 1 MMTKVTQQDSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + +P + S V L+ D Q K+ LVR+ Q + + Sbjct: 61 VSAELNYAQPANQSEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQEVKVE---DLSNAI 117 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 K + + + + VG ++ EL + V ++ I MLIY+ IRF++ A+GA+ Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 +L DI +G FALF F+LT +AAVL +IG+S+ND +VV DR+R+N + + R Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 +++D ++ ETL R+++TSM + VL M GG + F++ M G+ V SSI+I Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296 Query: 819 ILLFIYDWRA 828 L+ R Sbjct: 297 FALWRGLNRQ 306 >gi|110642642|ref|YP_670372.1| aminoglycoside/multidrug efflux system [Escherichia coli 536] gi|110344234|gb|ABG70471.1| probable aminoglycoside efflux pump [Escherichia coli 536] Length = 1037 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIIAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSV 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 80.1 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIIAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|16759455|ref|NP_455072.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142773|ref|NP_806115.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162899|ref|ZP_03348609.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|25318730|pir||AF0561 acriflavin resistance protein B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501747|emb|CAD04960.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Typhi] gi|29138405|gb|AAO69975.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 1049 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + +P+ L + T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + I Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + P + S Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + + I+ + + + +G V Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LVEAMLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|254521358|ref|ZP_05133413.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14] gi|219718949|gb|EED37474.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14] Length = 1040 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 78/702 (11%), Positives = 185/702 (26%), Gaps = 42/702 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + +P+ P Sbjct: 8 RPIFAWVIAIIIMLAGGLALF-----KLPVSMYPNVAPPAVE---------ISATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 V + ++ L + ITL+F + +V LQ Sbjct: 54 AKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + + + + A + + + +D++ Sbjct: 114 AMPLLPQEVQRQGINVAKSSSGFLNVIAFVSENGSMDANDIADYVGSNVVDRLSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L + A+++ N G Sbjct: 174 NIQVFG-GKYAMRIWLDPNKLHTYGLSVAEVTAAVKAQNAQVAIGQLGGAPSVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I + Sbjct: 233 TINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESYDFVT 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T +++ + S Sbjct: 280 RYNGQPASGLAVTLATGANALDTAAGVDAALQDMKSFFPAGLKAEIPYDTTPFVRVSIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L++LG ++ + ++ +V Sbjct: 340 VVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAMLGFSVNMLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + V + F Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G R F+ T+ ++ +S+ AI + A+ +++ + Sbjct: 460 SGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLK-------PLKKGEHHVAHKGW 512 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 F S + ++ GI + +GVL R + + Sbjct: 513 SGRFFNGFNHGFDRTSESYQRGVRGIIHRPWRFMGIVAALFVLMGVLFVRLPSSFLPNED 572 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTIQNTE 655 L + E+ + + +E V + Sbjct: 573 QGVLMALVQAPVGATQERTLESITALENHFLQNEKDAVESVFSVQGFSFAGMGQNAGMAF 632 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 + S G++ + A+A L I F + F AI Sbjct: 633 VKLKDWSERDADNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 6/241 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + D + + L +++ ++ + + P Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVDAALQDMKSFFPAGLKA 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 R I+ + +I + + + + +++ + + L + + + T G Sbjct: 324 EIPYDTTPFVRVSIKGVVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A+ G N+ + A++ IG V+D +VV + + + +S + KS+ + G Sbjct: 384 AMLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V + +PMA GS F+ + + ++ +I + + + Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501 Query: 829 K 829 K Sbjct: 502 K 502 Score = 64.7 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 31/247 (12%), Positives = 78/247 (31%), Gaps = 13/247 (5%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + + V S + + N Sbjct: 779 QPFRMVPEDFDLWSVKNDKGEMVPFSAFATKHWDYGSPRLERYNGVSAMEIQGEPAPGVA 838 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 A + ++ K+ T + + L+ +S + + + + Sbjct: 839 SGDAMAEIEQLAKQLPAGFGIEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAA 892 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 ++ W + L I + G+E ++ A+LT +G + + +++ + + Sbjct: 893 MYESWSVPTAVLLAAPLGILGAVLANTFKGLERDIYFQVAMLTTVGLTSKNAILIVEFAK 952 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802 +N+ S + I ++ + L V TS+A + V+P+A+ G + + Sbjct: 953 ENL---EKGASLIESIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVL 1009 Query: 803 FGIVVAA 809 G++V Sbjct: 1010 GGMIVGT 1016 >gi|59800645|ref|YP_207357.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae FA 1090] gi|194097899|ref|YP_002000944.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae NCCP11945] gi|239998372|ref|ZP_04718296.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae 35/02] gi|240013498|ref|ZP_04720411.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae DGI18] gi|240080077|ref|ZP_04724620.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae FA19] gi|240115031|ref|ZP_04729093.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID18] gi|240120570|ref|ZP_04733532.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID24-1] gi|254493096|ref|ZP_05106267.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae 1291] gi|260441153|ref|ZP_05794969.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae DGI2] gi|268594233|ref|ZP_06128400.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae 35/02] gi|268596231|ref|ZP_06130398.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae FA19] gi|268600710|ref|ZP_06134877.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID18] gi|291044481|ref|ZP_06570190.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae DGI2] gi|293397617|ref|ZP_06641823.1| preprotein translocase SecF subunit [Neisseria gonorrhoeae F62] gi|59717540|gb|AAW88945.1| putative protein-export membrane protein [Neisseria gonorrhoeae FA 1090] gi|193933189|gb|ACF29013.1| protein export protein SecF [Neisseria gonorrhoeae NCCP11945] gi|226512136|gb|EEH61481.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae 1291] gi|268547622|gb|EEZ43040.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae 35/02] gi|268550019|gb|EEZ45038.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae FA19] gi|268584841|gb|EEZ49517.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID18] gi|291011375|gb|EFE03371.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae DGI2] gi|291611563|gb|EFF40632.1| preprotein translocase SecF subunit [Neisseria gonorrhoeae F62] gi|317163661|gb|ADV07202.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae TCDC-NG08107] Length = 311 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVARGLNFSVEFTGGTVMEVQYQQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L++GD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKMRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + I ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVNNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298 Query: 830 NAR 832 A+ Sbjct: 299 IAK 301 >gi|168243253|ref|ZP_02668185.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449255|ref|YP_002046544.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407559|gb|ACF67778.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337673|gb|EDZ24437.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 1037 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 69.3 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIRRRFPLKPR 1035 >gi|299768779|ref|YP_003730805.1| preprotein translocase subunit SecF [Acinetobacter sp. DR1] gi|298698867|gb|ADI89432.1| preprotein translocase subunit SecF [Acinetobacter sp. DR1] Length = 321 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 4/310 (1%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 M + ++ D I FM+ SIL ++ SI + T GLN G+DF GG Sbjct: 1 MMTKVTQQDSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIVTKGLNLGLDFTGG 60 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + +P + S V L+ D Q K+ LVR+ Q + + Sbjct: 61 VSAELNYAQPANQSDVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQEVKVE---DLNNAI 117 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 K + + + + VG ++ EL + V ++ I MLIY+ IRF++ A+GA+ Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 +L DI +G FALF F+LT +AAVL +IG+S+ND +VV DR+R+N + + R Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 +++D ++ ETL R+++TSM + VL M GG + FA+ M G+ V SSI+I Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFAVAMFVGVFVGTYSSIYIGTA 296 Query: 819 ILLFIYDWRA 828 L+ R Sbjct: 297 FALWRGLNRQ 306 >gi|253700408|ref|YP_003021597.1| preprotein translocase subunit SecF [Geobacter sp. M21] gi|251775258|gb|ACT17839.1| protein-export membrane protein SecF [Geobacter sp. M21] Length = 301 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 87/296 (29%), Positives = 144/296 (48%), Gaps = 9/296 (3%) Query: 536 DCIAIQFMRARFWGVGISILFSICSI---CLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 I FM R IS + ++ I + N GIDF GGI + V +PV Sbjct: 5 RNTNIDFMSLRKISFIISGIVAVVGILGVIAIGRGTANMGIDFSGGIAMQVKFAQPVTTQ 64 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 VR L I ++ Q G LV++ + L T++ Sbjct: 65 GVRDALGKGGINEVELQEITGGNQILVKMHKSEKSAQNVEDALTQQMA-----GNAFTVE 119 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 ++ +GP I +L + +V V +S + +++YI RF + F +GA+ + D+ + F Sbjct: 120 SSTEIGPSIGEKLKKDTLVAVALSMLGIILYIAWRFDFKFGVGAVVATMHDVLAMIAVFY 179 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 + E N+ + AVLT+ GYS+ D VVV+DR+R+NM + ++SINETL R+ Sbjct: 180 VLHKEVNILLITAVLTIAGYSLTDTVVVFDRIRENMHKSLK-DPLFVIFNRSINETLSRT 238 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + TS+ F++ + + ++GG VI FA + G++VA SS+F+A+PI+ Sbjct: 239 IITSVTTFLAAISLYLFGGEVIHDFAFALVVGVLVATYSSVFVASPIVALWEKSSE 294 >gi|323965148|gb|EGB60607.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli M863] gi|327254789|gb|EGE66405.1| inner membrane protein [Escherichia coli STEC_7v] Length = 1049 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKYQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|333001602|gb|EGK21170.1| inner membrane protein [Shigella flexneri VA-6] Length = 1037 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNAAINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKAEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFIHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|260582875|ref|ZP_05850660.1| protein-export membrane protein SecD [Haemophilus influenzae NT127] gi|260094088|gb|EEW77991.1| protein-export membrane protein SecD [Haemophilus influenzae NT127] Length = 616 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + S N + GLDLRGG ++EVD + + + D LR L+KE I +++ Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169 Query: 93 QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + ++ A+ + + + I++ LS Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278 Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V N + D G+ + + + G H+ +++ D + Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEIKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 P V ++ D G + T+ KP+A + Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q QI+G +I A L+ +L++G+L + IVEER +G LG+ ++ +G A Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GLV ++ FM+ Y +G++A F++ +N++L + L+S+L ATL++P IAGIVL +G++ Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ ERI+EE R +S+ +++ G++ A+++IFD+N+T ++ ++L+ G G ++G Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 578 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 FAIT+ L + ISMFTAI+ RA++ + K++K + Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +GI + +A++ ++ +K F + A L+++I +G ++ Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G SV+ V++++R+++ ++ S + I++ N Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G I FAI ++ G+ ++ ++I ++ +Y + Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613 Score = 40.4 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ I IG+L +LPN + + G+ Sbjct: 4 RYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQI----------------SGTR------ 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + L D L++ + S+ I F ++ + DK+ L Sbjct: 42 GQEANTSVLGQVQDVLKT----NNLPTKSIVLENGSILARFTNTDDQLLAKDKIAERL 95 >gi|331664024|ref|ZP_08364934.1| putative aminoglycoside efflux pump [Escherichia coli TA143] gi|331059823|gb|EGI31800.1| putative aminoglycoside efflux pump [Escherichia coli TA143] Length = 1037 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 178/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + ++ + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVMVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|145628558|ref|ZP_01784358.1| preprotein translocase subunit SecD [Haemophilus influenzae 22.1-21] gi|145639848|ref|ZP_01795449.1| preprotein translocase subunit SecD [Haemophilus influenzae PittII] gi|144979028|gb|EDJ88714.1| preprotein translocase subunit SecD [Haemophilus influenzae 22.1-21] gi|145271066|gb|EDK10982.1| preprotein translocase subunit SecD [Haemophilus influenzae PittII] gi|309750343|gb|ADO80327.1| General secretory pathway component SecD [Haemophilus influenzae R2866] Length = 616 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + S N + GLDLRGG ++EVD + + + D LR L+KE I +++ Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169 Query: 93 QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + ++ A+ + + + I++ LS Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278 Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V N + D G+ + + + G H+ +++ D + Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRTVLGGEHIINSSSGLDQHSS 338 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 P V ++ D G + T+ KP+A + Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q QI+G +I A L+ +L++G+L + IVEER +G LG+ ++ +G A Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GLV ++ FM+ Y +G++A F++ +N++L + L+S+L ATL++P IAGIVL +G++ Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ ERI+EE R +S+ +++ G++ A+++IFD+N+T ++ ++L+ G G ++G Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 578 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 FAIT+ L + ISMFTAI+ RA++ + K++K + Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +GI + +A++ ++ +K F + A L+++I +G ++ Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G SV+ V++++R+++ ++ S + I++ N Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G I FAI ++ G+ ++ ++I ++ +Y + Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613 >gi|91792761|ref|YP_562412.1| preprotein translocase subunit SecD [Shewanella denitrificans OS217] gi|91714763|gb|ABE54689.1| protein-export membrane protein SecD [Shewanella denitrificans OS217] Length = 616 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 156/516 (30%), Positives = 273/516 (52%), Gaps = 32/516 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + A+ + + LGLDLRGG H ++EVD + V + + RS L++E I +R Sbjct: 110 PEWLEALGGSPMKLGLDLRGGVHFLMEVDMSEAVRKMEEAKIADFRSQLREEKIRYAGVR 169 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 + I + F D+ + D + +S+ + Sbjct: 170 KTPKGIEIKFRDADTVAKAEAYLKTRGN--------DMTFADASEGDNFVLRANMSEVYV 221 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 Q+ A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++LG TA + Sbjct: 222 KQIKEEALQQNIITIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASI 281 Query: 213 SFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 FH + G + +G +++ ++ ++G H+ GA +FD + + Sbjct: 282 EFHMLDDKADPSAAASGRVPAGSQVYPRREGGIAVLKKEIMLTGNHITGAQPSFDEYS-R 340 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA-----------------PVINQ 310 P V I+ D G F VT+DNIGKP+A + + V Sbjct: 341 PQVSINLDAQGGNIFSNVTKDNIGKPMATLFIEYKDSGLRNPNGTVKMTKIEEVISVATI 400 Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370 G+ + + LA +LRAG+L + IVEER +G LG+++I G A++ Sbjct: 401 QARLGRNFVINGLEHAESQNLALLLRAGALIAPVTIVEERTIGPSLGAENIQNGMQAMIW 460 Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVD 429 GL ++++FM++ Y +G++A+ ++ N+I+ + ++S++ A LTLP IAG+VL +G+AVD Sbjct: 461 GLAIVLIFMMIYYRAFGIIANIALLANIIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVD 520 Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 N+L+ ERIREE +SV ++ G++ A STI D+NIT + +++F G GAV+GFA Sbjct: 521 GNVLIYERIREEILAGRSVQQAIHEGYANALSTIADANITTFMTALIMFAVGTGAVKGFA 580 Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +T+ + I SMFTAI R+++ + K++K + I Sbjct: 581 VTLMIGIATSMFTAIVGTRSIVNAVWGGKRVKKLSI 616 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 96/242 (39%), Gaps = 6/242 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S +R+ ++++ I + + + + ++ T Sbjct: 376 DSGLRNPNGTVKMTKIEEVISVATIQARLGRNFVINGLEHAESQNLALLLRAGALIAPVT 435 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I +GP + E I+ G+ +I +LI++ I ++ F + A L+ +I +G Sbjct: 436 IVEERTIGPSLGAENIQNGMQAMIWGLAIVLIFMMIYYR-AFGIIANIALLANIIMVVGV 494 Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ++ G L +A ++ +G +V+ V++Y+R+R+ + S + I + L Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREEILA---GRSVQQAIHEGYANAL 551 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828 ++ F++ L M G + FA+ + GI + ++I I+ R Sbjct: 552 STIADANITTFMTALIMFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAVWGGKRV 611 Query: 829 KN 830 K Sbjct: 612 KK 613 >gi|327482634|gb|AEA85944.1| multidrug/solvent RND transporter TtgB [Pseudomonas stutzeri DSM 4166] Length = 1045 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 70/685 (10%), Positives = 184/685 (26%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + ++++PS G + Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----KLPVNQYPSIAAPAV---------GISVSYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT++F + +V LQ Sbjct: 54 AQTVQDTVVQVIEQQLNGIDGLRYISSESNSDGSMTITVTFDQGTNPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T +++ + + I+ D I ++ Sbjct: 114 ATPLLPQEVQQQGIRVTKAVRNFLIVIGLVSTDGSLDQRDLANYIVANMQDPISRTKGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T +S N G Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNNFSLTPVDVSSAIQAQNVQVSSGQLGGLPALPGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V K + + + + + Sbjct: 233 TVIGKTRL-------------QTPEQFRNILLKVNSDGSQVRLGDVAKVELGGETYAVSA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T+E L+ P + S + Sbjct: 280 HFNGKPAAGLALKLATGANALDTVEGVRKTIDELKPFFPPGVEVVYPYDTTPVISASITG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + LV ++ + ++ T +L++ G ++ ++ ++ Sbjct: 340 VMHTLLEAFVLVFLVMYLFLQNFRATLVPTLAVPVVLLGTFGVLAVFGFSINTLTMFAMI 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMREEGLSPLEATRKSMGQIQGALIGIGVVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++++S+ A+ A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVLMALIFTPALCATLLKPIDKDDHHEKRGFFGWFNRTF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + R + + ++ ++ + + +G + V+ Sbjct: 520 ERSVNGYERGVKAVLKRKAPFLLLYVLIVAVMVVLFNRIPTAFLPEEDQGVLFAQVMTPS 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + ++++++ + + F V G + +K Sbjct: 580 GSTAERTQQSIDAMRSYLLEEEGDIVRSVFTVTGFSFAGRGQSSGIAFIGLKPWSERTNK 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 ++ + + Sbjct: 640 DDSVFALAQRAQQHFASFRDAQVFA 664 Score = 76.7 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 85/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +S L +++ + ++ Sbjct: 258 SQVRLGDVAKVELGGETYAVSAHFNGKPAAGLALKLATGANALDTVEGVRKTIDELKPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + ++ + + + + +++ + + L + + + Sbjct: 318 PPGVEVVYPYDTTPVISASITGVMHTLLEAFVLVFLVMYLFLQNFRATLVPTLAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A+FG N + A++ IG V+D +VV + + + +S + KS+ Sbjct: 378 GTFGVLAVFGFSINTLTMFAMILAIGLLVDDAIVVVENV--ERVMREEGLSPLEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G + + +LPMA +GGS F+I + +V++ ++ + Sbjct: 436 GQIQGALIGIGVVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMVLSVLMALIFTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 84/239 (35%), Gaps = 8/239 (3%) Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + + G+ ++ + + V G+ + + + L Sbjct: 791 NADGEMVPFSAFATGEWTYGSPKLSRYNGVSAIEMLGEPAPGYSSGDAMAEVERIAAQLP 850 Query: 650 TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 G L + + +S + + + + ++ W + + L I Sbjct: 851 PGVGYSWTGQSYEERLAGSQTLALYALSLLVVFLCLAALYESWSIPFSVMLVVPLGIVGA 910 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 L F L G+ + ++T IG S + +++ + + L+ +S+ D ++ Sbjct: 911 LAFTLLRGLSNEVFFQVGLVTTIGLSARNAILIVEFAK---ALHEQGMSYADAALQACRM 967 Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 L + TS+A + V+P+A+ G + + G++ AA +IF + I Sbjct: 968 RLRPIIMTSLAFILGVVPLAIASGAGAGSKHAIGTGVIGGMLTAAVLAIFWIPLFYVMI 1026 >gi|28871441|ref|NP_794060.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28854692|gb|AAO57755.1| isothiocyanate resistance protein SaxB; isochorismatase family [Pseudomonas syringae pv. tomato str. DC3000] gi|331018027|gb|EGH98083.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 1044 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 67/687 (9%), Positives = 182/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------AIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVRDAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLLGTFGILAGFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ K+ F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ I+ + + + + G+ + Sbjct: 520 FDRSVVSYERGVGNMLKHKWLSYLGYIVIVAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + ++ Sbjct: 640 ENSVFKLAERAQGYFFSLRDAMVFAIV 666 Score = 74.3 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I+ + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESIKGVVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAGFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 68.2 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + A V S S + +S N + L Sbjct: 778 RMTPEDLKKWYVRNSAGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEILGTPAPGYSSGD 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLTDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + I + Sbjct: 1009 ITAVVLAIFWVPLFFVSISGLFKSKQK 1035 >gi|323976054|gb|EGB71147.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli TW10509] Length = 1049 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKYQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|40063326|gb|AAR38144.1| protein-export membrane protein SecD [uncultured marine bacterium 578] Length = 615 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 175/519 (33%), Positives = 291/519 (56%), Gaps = 36/519 (6%) Query: 32 LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ++ S + +SLGLDLRGG H +LEVD + ++ + Y +ELR+ L+K+ + + Sbjct: 108 IPQWLSGLGGKAMSLGLDLRGGVHFLLEVDMEAVISTSINRYYNELRTLLRKDKL-YKKI 166 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 R+ N + SF K + + L + + + +E E+S+ +S N Sbjct: 167 RKEDNMLVASFKTEEQKNDAKKLIKKNLADLI---------IVEGSESELEVSLEMSSNA 217 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 S A+ Q++ +R R++++G++E IQ+ G RI++QLPG QD +R +++LG A Sbjct: 218 QKAAKSSALNQNITTLRNRVNELGVAEPIIQQQGFERIVVQLPGVQDTARAKEILGAVAT 277 Query: 212 MSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 + F V N + G + + DG L++ V +G ++ ++ K Sbjct: 278 VEFRLVDEKNDVQTAIQSGKIPSGSKLYKFKDGRPLLLKTTVIATGENIVD-ASSGVDKD 336 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT-------------------AP 306 + P+V I+ D G R E T++ +G ++VV + Sbjct: 337 NNPMVSITLDNAGGRTMLETTKEFVGYRMSVVFIENQVETIIENGKTVKKRSKTQDIINA 396 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q S + QI+G + A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 397 ATIQGTFSNRFQITGLESSREARNLALLLRAGSLSAPIEIIEERTIGPSLGADNIQKGLI 456 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G L+++FM + Y +GLVA+ ++ LN+I +++LS++ ATLTLP IAGIVL +G+ Sbjct: 457 SVLVGFALVLVFMALRYRIFGLVANVALTLNLITIVSILSMIQATLTLPGIAGIVLTVGM 516 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 AVD+N+L+ ERI+EE R +++ ++ G+ +A TI D+NIT LIA++VLF FG GA++ Sbjct: 517 AVDANVLIFERIKEELRSTKNIQKAISAGYEKALLTIADANITTLIASLVLFSFGTGAIK 576 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GFA+T+ + I+ SMFTAI + RAM+ I KK++ I I Sbjct: 577 GFAVTLSIGIITSMFTAIIVSRAMINIIYGGKKIEEISI 615 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 105/254 (41%), Gaps = 4/254 (1%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 F G V V+ + + N + G ++ Sbjct: 360 FVGYRMSVVFIENQVETIIENGKTVKKRSKTQDIINAATIQGTFSNRFQITGLESSREAR 419 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + + + I +GP + + I+KG++ V++ +L+++ +R++ F L Sbjct: 420 NLALLLRAGSLSAPIEIIEERTIGPSLGADNIQKGLISVLVGFALVLVFMALRYRI-FGL 478 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A L L++ + ++ L +A ++ +G +V+ V++++R+++ ++ ++ Sbjct: 479 VANVALTLNLITIVSILSMIQATLTLPGIAGIVLTVGMAVDANVLIFERIKEELR---ST 535 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 + + I + L ++ I+ L + +G I FA+ ++ GI+ + ++I Sbjct: 536 KNIQKAISAGYEKALLTIADANITTLIASLVLFSFGTGAIKGFAVTLSIGIITSMFTAII 595 Query: 815 IAAPILLFIYDWRA 828 ++ ++ IY + Sbjct: 596 VSRAMINIIYGGKK 609 >gi|167549504|ref|ZP_02343263.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325305|gb|EDZ13144.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 1037 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 69.3 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIRRRFPLKPR 1035 >gi|184159487|ref|YP_001847826.1| preprotein translocase subunit SecF [Acinetobacter baumannii ACICU] gi|183211081|gb|ACC58479.1| Preprotein translocase subunit SecF [Acinetobacter baumannii ACICU] Length = 320 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 97/309 (31%), Positives = 156/309 (50%), Gaps = 4/309 (1%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 M + P ++ D I FM+ SIL ++ SI + T GLN G+DF GG+ Sbjct: 1 MTKVTQQPSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGGV 60 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + +P + + V L+ D Q K+ LVR+ Q + + Sbjct: 61 SAELNYAQPANQAEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQDIKVE---DLNNAIT 117 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 K + + + + VG ++ EL + V ++ I MLIY+ IRF++ A+GA+ + Sbjct: 118 KAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVMS 177 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L DI +G FALF F+LT +AAVL +IG+S+ND +VV DR+R+N + + R+ Sbjct: 178 LFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPRE 236 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++D ++ ETL R+++TSM + VL M GG + F++ M G+ V SSI+I Sbjct: 237 IVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTAF 296 Query: 820 LLFIYDWRA 828 L+ R Sbjct: 297 ALWRGLNRQ 305 >gi|226942352|ref|YP_002797425.1| Hydrophobe/amphiphile efflux-1 HAE1 [Azotobacter vinelandii DJ] gi|226717279|gb|ACO76450.1| Hydrophobe/amphiphile efflux-1 HAE1 [Azotobacter vinelandii DJ] Length = 1046 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 69/547 (12%), Positives = 148/547 (27%), Gaps = 38/547 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L ++++PS P + Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----GLPINQYPSIAPPAV---------SISVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + N IT +F + +V LQ Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYITSDSNSDGNMTITATFEPGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T +++ + + + I+ D + ++ Sbjct: 114 ATPLLPQEVQQQGIRVTKSVRNFLLIVGFVSEDGSMDRNDLANYIVSNIQDPLSRAKGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP+RL T + N FG Sbjct: 174 DFQVFGSQ-YAMRIWLDPARLNNFQLTPVDVRNAVESQNVQVSSGQFGGLPAVPDQQLSA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFRDILLKVNGDGSQVRLDDVAEVGLGGENYSITS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T + A L P + S Sbjct: 280 TYNGRPAAGMAIRLATDANALETAQAVRDTLAELEPFFPPGVKVVYPYDTTPVISASIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G T+ ++ +V Sbjct: 340 VVKTLGEAIVLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGFTINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEDGLPPREATRKSMGQIQGALVGIALVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG R F+IT+ ++ +S+ A+ A+ + +K + R Sbjct: 460 GGSTGVIYRQFSITIVAAMALSVLVALIFTPALCATL-----LKPVSRGEHHRKRGFFGW 514 Query: 538 IAIQFMR 544 F R Sbjct: 515 FNRSFER 521 Score = 82.0 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 83/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + I+ + +++ + + ++ Sbjct: 258 SQVRLDDVAEVGLGGENYSITSTYNGRPAAGMAIRLATDANALETAQAVRDTLAELEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + L + + + Sbjct: 318 PPGVKVVYPYDTTPVISASIEEVVKTLGEAIVLVFLVMYLFLQNVRATLIPTLAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + A++ IG V+D +VV + + + + R+ KS+ Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMVEDGLPPREATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA +GGS F+I + + ++ ++ + Sbjct: 436 GQIQGALVGIALVLSAVFVPMAFFGGSTGVIYRQFSITIVAAMALSVLVALIFTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 62.8 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 89/268 (33%), Gaps = 19/268 (7%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + G + A V S + + ++ N L Sbjct: 778 RMTPEDLGKWFVRNAAGTMVPFSAFANGEWTYGPPKLARYNGVSAMEILGEPAPGYSSGE 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + ++ I T + E + + S + + + + ++ Sbjct: 838 AMAEVERIAEELPPGIGYAWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + + L + L F +L G+ ++ +LT +G S + +++ + + Sbjct: 892 SWSIPFSVMLVVPLGVIGALCFTSLRGLSNDVYFQVGLLTTVGLSAKNAILIVEFAKD-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI-----GSFAIPMAF 803 L+ ++ + ++ L + TS+A + V+P+AV G+ + + Sbjct: 950 -LHEQGMALPEAAVEACRMRLRPIIMTSLAFILGVVPLAVSSGAGAGAGSQHAIGTGVIG 1008 Query: 804 GIVVAASSSIFIAAPILL----FIYDWR 827 G++ A +IF + D R Sbjct: 1009 GMLTATVLAIFWVPLFYVLVSSLFGDRR 1036 >gi|296314981|ref|ZP_06864922.1| protein-export membrane protein SecF [Neisseria polysaccharea ATCC 43768] gi|296838182|gb|EFH22120.1| protein-export membrane protein SecF [Neisseria polysaccharea ATCC 43768] Length = 311 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 167/303 (55%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L++GD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKMRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVIDLLKKDSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + I ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298 Query: 830 NAR 832 A+ Sbjct: 299 IAK 301 >gi|170767495|ref|ZP_02901948.1| acriflavine resistance protein D [Escherichia albertii TW07627] gi|170123829|gb|EDS92760.1| acriflavine resistance protein D [Escherichia albertii TW07627] Length = 1037 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 76/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVQVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVKLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVINRLDELSQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L ++ +G V Sbjct: 516 NQMFKRNAERYEKGVAKILRRSLRWIMIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQVEKYFFTHEKDNIMSVFATVGSGPGGNGQNVARMFVRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKEFNKIKEARVIA 664 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 89/245 (36%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++++ P Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVINRLDELSQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 70.1 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L I L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGIIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA+ Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMAISSGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|16765801|ref|NP_461416.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16421022|gb|AAL21375.1| RND family aminoglycoside/multidrug efflux pump [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261247681|emb|CBG25508.1| putative efflux pump [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159033|emb|CBW18546.1| putative efflux pump [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913469|dbj|BAJ37443.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222817|gb|EFX47888.1| putative aminoglycoside efflux pump [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130811|gb|ADX18241.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 1037 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIRRRFPLKPR 1035 >gi|325921779|ref|ZP_08183600.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Xanthomonas gardneri ATCC 19865] gi|325547740|gb|EGD18773.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Xanthomonas gardneri ATCC 19865] Length = 1047 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 71/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L + ++PS P + + + Sbjct: 8 RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPA-------------VAITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + +K + S ITL+F + + +V Sbjct: 50 PGASAQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFDNGTDPDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ + T + + + + S + + I Sbjct: 110 KLSLATPLLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L T + N G + Sbjct: 170 EGVGDTTLFGSQ-YAMRVWMDPNKLNNFSLTPVDVRTAIQAQNAQVSAGQLGALPAVANQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + + I Sbjct: 229 QLNATITAQTRL-------------KTAEQFENILLRTQSDGAQVRLRDVARIELGSESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T+ P Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +L++ G TL ++ Sbjct: 336 SIEQVVHTLIEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAVFGFTLNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMGEEHLSPKEATRKSMDQISGALVGVALVLAAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSI 523 + FFGG R F+IT+ ++ +S+ A+ + A+ +++ Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVEKGHGLATTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + + + + L ++ + + +G + + V Sbjct: 516 NRVFDRGNNRYQGVVRHMLGKGWGYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ ++ + Q F V G ++ Sbjct: 576 QLPPGATDARTGEVLKQVEHHFLVDQKDSVAGVFAVSGFSFAGSGQNTGLAFVKLRPWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 ++ + + + Sbjct: 636 RTGKGQSVTDVAAKAGAFFAGIRDARVFA 664 Score = 81.3 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 6/242 (2%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V L V + + + L +++ R ++ ++ + P Sbjct: 259 QVRLRDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFP 318 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706 R I + + +I + + + + +++ + + L + + + Sbjct: 319 PGMKVQKPYDTTPFVRISIEQVVHTLIEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLG 378 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T G A+FG N + A++ IG V+D +VV + + + +S ++ KS++ Sbjct: 379 TFGVLAVFGFTLNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMGEEHLSPKEATRKSMD 436 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + G V ++ +PMA +GGS F+I + + ++ ++ + + + Sbjct: 437 QISGALVGVALVLAAVFVPMAFFGGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATL 496 Query: 824 YD 825 Sbjct: 497 LK 498 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 63/169 (37%), Gaps = 9/169 (5%) Query: 668 KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 G G++ +++++ + W I + L + TL L ++ Sbjct: 869 TGQTGLLYGLSILIVFLCLAALYESWAIPFSVILVVPLGVFGTLLGAMLTWKMNDVYFQV 928 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 +LT IG + + +++ + ++ L+ + S D ++ L + TS+A + V+ Sbjct: 929 GLLTTIGLASKNAILIVEFAKE---LHESGKSLIDSALEAARMRLRPILMTSLAFILGVV 985 Query: 785 PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 P+ + G + + G++ +I + + + Sbjct: 986 PLVLGSGAGAGAQHALGTAVIGGMLSGTILAILFVPLFFVLVMGLFKRR 1034 >gi|319775889|ref|YP_004138377.1| Protein-export membrane protein SecD [Haemophilus influenzae F3047] gi|329123738|ref|ZP_08252298.1| protein-export membrane protein SecD [Haemophilus aegyptius ATCC 11116] gi|317450480|emb|CBY86697.1| Protein-export membrane protein SecD [Haemophilus influenzae F3047] gi|327469937|gb|EGF15402.1| protein-export membrane protein SecD [Haemophilus aegyptius ATCC 11116] Length = 616 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + S N + GLDLRGG ++EVD + + + D LR L+KE I +++ Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169 Query: 93 QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + ++ A+ + + + I++ LS Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278 Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V N + D G+ + + + G H+ +++ D + Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 P V ++ D G + T+ KP+A + Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q QI+G +I A L+ +L++G+L + IVEER +G LG+ ++ +G A Sbjct: 399 IQGRFGSNFQITGIDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GLV ++ FM+ Y +G++A F++ +N++L + L+S+L ATL++P IAGIVL +G++ Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ ERI+EE R +S+ +++ G++ A+++IFD+N+T ++ ++L+ G G ++G Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNSAFTSIFDANLTTILTAIILYAVGTGPIQG 578 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 FAIT+ L + ISMFTAI+ RA++ + K++K + Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +GI + +A++ ++ +K F + A L+++I +G ++ Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G SV+ V++++R+++ ++ S + I++ N Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNSAFTSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G I FAI ++ G+ ++ ++I ++ +Y + Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613 >gi|260557108|ref|ZP_05829324.1| protein-export membrane protein SecF [Acinetobacter baumannii ATCC 19606] gi|332873842|ref|ZP_08441783.1| export membrane protein SecF [Acinetobacter baumannii 6014059] gi|260409214|gb|EEX02516.1| protein-export membrane protein SecF [Acinetobacter baumannii ATCC 19606] gi|322509400|gb|ADX04854.1| secF [Acinetobacter baumannii 1656-2] gi|323519421|gb|ADX93802.1| preprotein translocase subunit SecF [Acinetobacter baumannii TCDC-AB0715] gi|332737946|gb|EGJ68832.1| export membrane protein SecF [Acinetobacter baumannii 6014059] Length = 321 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 4/310 (1%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 M + P ++ D I FM+ SIL ++ SI + T GLN G+DF GG Sbjct: 1 MMTKVTQQPSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + +P + + V L+ D Q K+ LVR+ Q + + Sbjct: 61 VSAELNYAQPANQAEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQDIKVE---DLNNAI 117 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 K + + + + VG ++ EL + V ++ I MLIY+ IRF++ A+GA+ Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 +L DI +G FALF F+LT +AAVL +IG+S+ND +VV DR+R+N + + R Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 +++D ++ ETL R+++TSM + VL M GG + F++ M G+ V SSI+I Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296 Query: 819 ILLFIYDWRA 828 L+ R Sbjct: 297 FALWRGLNRQ 306 >gi|240112287|ref|ZP_04726777.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae MS11] gi|240117316|ref|ZP_04731378.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID1] gi|240127577|ref|ZP_04740238.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae SK-93-1035] gi|268598354|ref|ZP_06132521.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae MS11] gi|268603016|ref|ZP_06137183.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID1] gi|268685961|ref|ZP_06152823.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae SK-93-1035] gi|268582485|gb|EEZ47161.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae MS11] gi|268587147|gb|EEZ51823.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID1] gi|268626245|gb|EEZ58645.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae SK-93-1035] Length = 311 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVARGLNFSVEFTGGTVMEVQYQQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L++GD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKMRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + I ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVNNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALRGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298 Query: 830 NAR 832 A+ Sbjct: 299 IAK 301 >gi|290967878|ref|ZP_06559428.1| protein-export membrane protein SecF [Megasphaera genomosp. type_1 str. 28L] gi|290782017|gb|EFD94595.1| protein-export membrane protein SecF [Megasphaera genomosp. type_1 str. 28L] Length = 319 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 74/289 (25%), Positives = 148/289 (51%), Gaps = 1/289 (0%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 ++ ++ R W +S + + S+ +F HG N+GID+ GG L + + V ++ VR+ Sbjct: 1 MSFDIVKHRKWWFSLSAILVLLSLISIFVHGFNFGIDYTGGTILDMQFKQEVTVAQVRTV 60 Query: 598 LESLQIG-DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 ++ I + G + + T + V +++ + + + ++ TE Sbjct: 61 VDHSSIKLGNTVIQLSGVTDQSASKEVMLRMRNLTTEESKTVAQELNDKLGGAEVKRTES 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG I E+ + I+ + ++ I + YI RF++ A+ AI +++ D+ LG F+ F + Sbjct: 121 VGAVIGSEVTKNAILNLAVAFIVLAAYISFRFEYKIAVSAIISILHDLIMVLGVFSFFHL 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 E + + +AA+LT+IGYS+N+ VV++DR+R+N + + + S+ L SI + + RS YT Sbjct: 181 EIDASFLAAILTVIGYSMNEAVVIFDRVRENTRTHRRTDSYEKLAHDSIAQNIHRSFYTL 240 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 + + +GG +F++ M G + A SSI + + + + Sbjct: 241 ATVLFACGALHFFGGESTKNFSLVMLIGFISGAYSSICVDTSLWVVWKN 289 >gi|16761398|ref|NP_457015.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140905|ref|NP_804247.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|207857892|ref|YP_002244543.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213649876|ref|ZP_03379929.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289828738|ref|ZP_06546528.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25318729|pir||AE0816 probable efflux pump STY2719 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503697|emb|CAD07711.1| putative efflux pump [Salmonella enterica subsp. enterica serovar Typhi] gi|29136530|gb|AAO68096.1| putative efflux pump [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|206709695|emb|CAR34045.1| putative efflux pump [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 1037 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKNNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|291282382|ref|YP_003499200.1| putative multidrug-efflux transport protein [Escherichia coli O55:H7 str. CB9615] gi|290762255|gb|ADD56216.1| putative multidrug-efflux transport protein [Escherichia coli O55:H7 str. CB9615] gi|320659210|gb|EFX26799.1| putative multidrug-efflux transport protein [Escherichia coli O55:H7 str. USDA 5905] Length = 1029 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + K + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDKGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFDRFYRRT 519 Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592 Q R + + + L L ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 80.9 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDKGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 >gi|168466776|ref|ZP_02700630.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630739|gb|EDX49331.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 1037 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|320653510|gb|EFX21615.1| putative multidrug-efflux transport protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 1029 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + K + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDKGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFDRFYRRT 519 Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592 Q R + + + L L ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 80.9 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDKGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 >gi|309786045|ref|ZP_07680674.1| acriflavine resistance protein B [Shigella dysenteriae 1617] gi|308926156|gb|EFP71634.1| acriflavine resistance protein B [Shigella dysenteriae 1617] Length = 1049 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVATNMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVIYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + I++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVIYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 58.2 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALHESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|168238214|ref|ZP_02663272.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738041|ref|YP_002115543.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713543|gb|ACF92764.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288912|gb|EDY28285.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 1037 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERTTKAFNQIKEARVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|284929230|ref|YP_003421752.1| protein translocase subunit secF [cyanobacterium UCYN-A] gi|284809674|gb|ADB95371.1| protein translocase subunit secF [cyanobacterium UCYN-A] Length = 311 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 83/311 (26%), Positives = 162/311 (52%), Gaps = 15/311 (4%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY----GIDFKGGIQLGVLAN----- 586 + I R +W + +I+ S L+ N G+DF GG +L + Sbjct: 1 MKLNIIKWRKAWWFISSTIILSSIIGILISYSKFNAPLKLGLDFVGGTRLQLQLECEIQK 60 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + + + + L +++ +N ++ +Q + D +T + + + K+ + Sbjct: 61 KCITPIDTKIVRDILSTRNLNDNTIQVLENNILSIQTKALDVEQRTELQKELNNKVGKFD 120 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 P + VGP I EL + GI+ +++S + ++ Y+ +RFK +A AI L+ D+ Sbjct: 121 PE--TIQIDTVGPTIGWELFKSGILALLVSFLGIVFYLSVRFKIDYAFFAILALVHDVLI 178 Query: 707 TLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 T+G F+ G IE N + ++LT+IG+SVND VV+YDR+R+N+ ++ + ++++ Sbjct: 179 TVGCFSFLGLFASIEVNSLFLVSLLTIIGFSVNDTVVIYDRIRENIDRFSEELPLSEIVN 238 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 KS+N+TL RS+ T+ + ++ + ++GG I FA+ + G V + SSIFIA+ +L + Sbjct: 239 KSVNQTLARSINTTATTLLPLISLFLFGGETIKYFALALILGFSVGSYSSIFIASTLLAW 298 Query: 823 IYDWRAKNARI 833 + + N ++ Sbjct: 299 WREPKLSNIKL 309 >gi|302389927|ref|YP_003825748.1| protein-export membrane protein SecF [Thermosediminibacter oceani DSM 16646] gi|302200555|gb|ADL08125.1| protein-export membrane protein SecF [Thermosediminibacter oceani DSM 16646] Length = 284 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 148/281 (52%), Gaps = 6/281 (2%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 ++ GIS+ + L T GLN+GIDF GG L +P L + +ES + Sbjct: 3 RKWLWFGISLAVIALGLFYLVTRGLNWGIDFTGGDILHYNIGQPYSLDEAKKLMESFNLR 62 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 + + ++ L+ + + + I + P + + E V I +E Sbjct: 63 TVEVREAGDDRQELIVRTVV-----LTADQQKKITEAIRQKWPQAQLIRAERVDAVIGKE 117 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L R+ ++ +II+ I +LIY+ RF++ + AI L+ D+ + F+A+F I + T +A Sbjct: 118 LQRQALIALIIANIGVLIYVAFRFEFKSGVAAILALVHDVLVMISFYAIFYIPVDTTFIA 177 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT++GYS+ND +V++DR+R+N+K+ SF ++ + SI +TL RS+ TS+ +S++ Sbjct: 178 AILTVVGYSINDTIVIFDRIRENLKIMGK-ASFNEIANTSIVQTLARSINTSITTLLSII 236 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 + GG I F + + GI+ S+IFIA+P+ Sbjct: 237 ALYFLGGETIKDFTLALIVGIMSGVYSTIFIASPLWSMFRG 277 >gi|269138317|ref|YP_003295017.1| preprotein translocase subunit SecD [Edwardsiella tarda EIB202] gi|267983977|gb|ACY83806.1| preprotein translocase subunit SecD [Edwardsiella tarda EIB202] gi|304558348|gb|ADM41012.1| Protein-export membrane protein SecD [Edwardsiella tarda FL6-60] Length = 618 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 160/527 (30%), Positives = 282/527 (53%), Gaps = 43/527 (8%) Query: 30 SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H +++VD D ++ + D LRS L+ +GI Sbjct: 104 NLAPATPKWLAMVGAEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLRDKGI 163 Query: 87 GVFSMR----QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142 ++R + ++F D+ ++ L+ + + + Sbjct: 164 PYSTIRKLPDPASGGVEINFRDA-----------AARDAASNYLSPRHRDLVFSNAGDTT 212 Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202 + V++ + + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R Sbjct: 213 LKAVMTDDRLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARA 272 Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGA 257 +++LG TA + F V N + G DG ++ +V ++G H+ + Sbjct: 273 KEILGATATLEFRLVNSNVDAQAAASGRVPGDSEVKYTRDGRPVVLYKRVILTGDHITDS 332 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP----------- 306 T++ + ++P V+IS D G T+DNIGKP+A + + Sbjct: 333 TSS-QDEFNRPQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKKDASGKPILEK 391 Query: 307 -------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ +I+G A L+ +LRAG+L + IVEER +G LG Sbjct: 392 QEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQ 451 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIA 418 +I +G A + GLV ++FM+V Y K+GL+A ++ N+++ + ++SLL ATLT+P IA Sbjct: 452 NIEQGLEACLWGLVASIIFMVVYYKKFGLIATTALLANLVMIVGIMSLLPGATLTMPGIA 511 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GIVL + +AVD+N+L+NERI+EE R ++V ++ G+ A+S+I D+N+T LI V+L+ Sbjct: 512 GIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILY 571 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 572 AVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 618 Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D ++ + + N ++ L G + + Sbjct: 372 FVEYKDSGKKDASGKPILEKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGA 431 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + +A +I++ + +K F L A T L+ ++ Sbjct: 432 LIAPIQIVEERTIGPTLGMQNIEQGLEACLWGLVASIIFMVVYYK-KFGLIATTALLANL 490 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ + + I + Sbjct: 491 VMIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHE 547 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++ I+ + + G I FAI A G+ + ++I I+ + Sbjct: 548 GYKGAFSSIIDANVTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLL 607 Query: 824 YDWRAKNA 831 Y + N Sbjct: 608 YGGKRINK 615 Score = 38.5 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 29/118 (24%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W I+ + IGLL ALPN + + Sbjct: 4 RYPLWKYIMLIVALVIGLLYALPNLYGEDPA---------------------VQIT-GAR 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 L D L I S+ I F D+ + + + L Sbjct: 42 GVAASESTLVQVRDVLEKQ----HIPSKSIALENGAILARFTDTDIQLRAREALVDTL 95 >gi|283780063|ref|YP_003370818.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pirellula staleyi DSM 6068] gi|283438516|gb|ADB16958.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pirellula staleyi DSM 6068] Length = 1098 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 72/689 (10%), Positives = 186/689 (26%), Gaps = 33/689 (4%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD- 61 + ++ +I G + + ++P P ++V Sbjct: 8 RPIFAAVISIIITLAGGIAVF-----ILPVAQYPEITPP---------------TVQVSC 47 Query: 62 -EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKV 115 + + + + + E + S + + +T++F + V Sbjct: 48 FYPGASSKVVADTVASPIEQQVIGVENMLYMSSQSTNDGGYNLTVTFEVGTNLDMAQVLV 107 Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 + L + K+ + + +++ + S Q D++ Sbjct: 108 QNRVNLALPSLPSEVKQTGVSVKKKSPNILLVVNLISPTGDYDQLYLSNYATIQIRDELA 167 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235 + ++ + DP+++ + + N G + Sbjct: 168 QIKGVGDVTYLGQLDYSMRVWLDPNKMASRNLAASDVVAALREQNVQVAAGALGRPPVPA 227 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 QY + ++ G + + + I Sbjct: 228 GQAFQYTLSTLGRLTQPEEFGDIIVKTGENGQLTRMRDLVTDPREDSTKRLFGGIQLGAK 287 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 L A + + T L+ + Sbjct: 288 NEDTSCALDAQPSIGLAIFQQPGSNALTTAALIRERMEELKKSFPKGLDFAIVYDTTPFI 347 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 S LV IV+ + + ++ ++ + +I T A++ LG +L Sbjct: 348 DESIKEVFKALRDAIILVAIVVLAFLQSWRATVIPLIAVPVAIIGTFAVMLGLGFSLNNL 407 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALI 472 S+ G+VL IG+ VD I+V E + S + I + + I Sbjct: 408 SLFGLVLAIGIVVDDAIVVVEAVEHHLEHGLSPKEAATKAMQEVTGPIIAISLVLMCVFI 467 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 + G R FA+T+ +S S ++++ A+ +++ K +S + Sbjct: 468 PCAFISGITGQFFRQFALTIAVSTFFSAVNSLTLSPALCGLLLKPKHEQSDPLT-RLINL 526 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 L+ + + S + + + G+ + + + + Sbjct: 527 LLGWFFKLFNLGFTSAANWYSKSVGMMLRVSVIVLAVYGGLLYLTYYEFTSVPTGFIPSQ 586 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 L +++ D + K + +++ + A + I Sbjct: 587 DKGYLLVDVRLPDSASLER--TKEVMAQVERIARGAGAAADAHDESHDHGHGESKSGGIP 644 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAML 681 + +++ I + +L Sbjct: 645 GVAHTITISGQSIVQNAIGSNFGTVYVIL 673 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 74/204 (36%), Gaps = 7/204 (3%) Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 Q +++ ++ +++ + P E I++ + + I Sbjct: 305 IFQQPGSNALTTAALIRERMEELKKSFPKGLDFAIVYDTTPFIDESIKEVFKALRDAIIL 364 Query: 680 MLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 + I + W + + + + I T G N ++ ++ IG V+D + Sbjct: 365 VAIVVLAFLQSWRATVIPLIAVPVAIIGTFAVMLGLGFSLNNLSLFGLVLAIGIVVDDAI 424 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIG 795 VV + + +S ++ K++ E G + S+ +P + G G Sbjct: 425 VVVEAV---EHHLEHGLSPKEAATKAMQEVTGPIIAISLVLMCVFIPCAFISGITGQFFR 481 Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819 FA+ +A +A +S+ ++ + Sbjct: 482 QFALTIAVSTFFSAVNSLTLSPAL 505 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 6/140 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L I + + + ++ G++ N+ + L+G + + +++ + ++ Sbjct: 937 SLTLPLAVILVVPMCLLCSVVGVDWAGLDINIFVQIGFVVLVGLASKNAILIVEFAKEKT 996 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805 S D ++ L + TS+A + V+P+A+ G + + I + G+ Sbjct: 997 AQ---GASPADATVEACRLRLRPIIMTSLAFILGVVPLAIAVGAGAEMRSTLGIAVFSGM 1053 Query: 806 VVAASSSIFIAAPILLFIYD 825 + IF+ + Sbjct: 1054 LGVTLFGIFLTPVFYYLVVK 1073 >gi|226946083|ref|YP_002801156.1| preprotein translocase subunit SecF [Azotobacter vinelandii DJ] gi|226721010|gb|ACO80181.1| SecF protein [Azotobacter vinelandii DJ] Length = 304 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 163/292 (55%), Gaps = 5/292 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM R +++ ++ S+ L GLN+G+DF GG + + RPV+LS VR Sbjct: 1 MKRVINFMGIRRVAFVATLVLTLLSLVSLAVRGLNFGLDFTGGTLIELSYERPVELSDVR 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + LE+ GD Q+F + LVRL+ Q + + T++ E Sbjct: 61 AGLETAGYGDALVQSFGATTDVLVRLK----GDDPQLGEKVASALRQSASDNPMTVKRAE 116 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL +G +G++++ +L+Y+ RF+W F GA+ +L D+ TLG F+ Sbjct: 117 FVGPAVGEELRDQGGLGMLLALGGILVYVAFRFQWKFGCGAVLSLFHDVIVTLGVFSFLQ 176 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 I F+LT +AAVL +IGYS+ND +VV+DR+R+N +L + I+ S +TL R++ T Sbjct: 177 IPFDLTVLAAVLAIIGYSLNDTIVVFDRIRENFRLLRK-ADLVENINISTTQTLLRTMAT 235 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 S++ +++L + ++GG + F++ + G++ SSI+IA +L+++ R Sbjct: 236 SISTLLAILALMLFGGEPLWGFSLALFIGVMAGTYSSIYIANVVLIWLKLTR 287 >gi|298370063|ref|ZP_06981379.1| protein-export membrane protein SecF [Neisseria sp. oral taxon 014 str. F0314] gi|298281523|gb|EFI23012.1| protein-export membrane protein SecF [Neisseria sp. oral taxon 014 str. F0314] Length = 311 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + D Sbjct: 1 MELFRIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYRQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ R LE+L++GD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKTREKLETLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNDVMNLLKQENPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + + +++Y+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGDELVTNGLMALGMVVAGIIVYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FALF EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + + +ID +I T+ Sbjct: 179 FALFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRNHTVPQVIDNAITSTM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R+ T + VL M ++GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTAITHGSTEAMVLSMLIFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLNREN 298 Query: 830 NAR 832 A+ Sbjct: 299 IAK 301 >gi|194445019|ref|YP_002041740.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403682|gb|ACF63904.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 1037 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|197250569|ref|YP_002147433.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263111|ref|ZP_03163185.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197214272|gb|ACH51669.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241366|gb|EDY23986.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|322613780|gb|EFY10719.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619477|gb|EFY16353.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624982|gb|EFY21811.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629575|gb|EFY26351.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633995|gb|EFY30732.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635567|gb|EFY32278.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639938|gb|EFY36612.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644379|gb|EFY40920.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652094|gb|EFY48456.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655257|gb|EFY51566.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658304|gb|EFY54570.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664304|gb|EFY60501.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669472|gb|EFY65621.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673199|gb|EFY69305.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676590|gb|EFY72658.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683341|gb|EFY79355.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685773|gb|EFY81766.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192549|gb|EFZ77778.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199595|gb|EFZ84686.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201247|gb|EFZ86315.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208077|gb|EFZ93022.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210200|gb|EFZ95101.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217066|gb|EGA01788.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220595|gb|EGA05044.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229245|gb|EGA13369.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235440|gb|EGA19524.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237374|gb|EGA21437.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245129|gb|EGA29130.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248832|gb|EGA32758.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253119|gb|EGA36951.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255918|gb|EGA39663.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260964|gb|EGA44561.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266400|gb|EGA49888.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269769|gb|EGA53219.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 1037 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|161612770|ref|YP_001586735.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362134|gb|ABX65902.1| hypothetical protein SPAB_00469 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 1037 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSAGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|110833365|ref|YP_692224.1| preprotein translocase subunit SecF [Alcanivorax borkumensis SK2] gi|110646476|emb|CAL15952.1| Preprotein translocase SecF subunit [Alcanivorax borkumensis SK2] Length = 307 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 153/292 (52%), Gaps = 3/292 (1%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 + I FM AR +S+ I S+ LL T GLN G+DF GG + V + V+LS R Sbjct: 5 PMNINFMAARKPLGVLSLALVIISVVLLLTRGLNLGLDFTGGTTVVVKSPTDVELSQARD 64 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 +L GD Q++ K +R+ P D +V + V + E + E Sbjct: 65 DLTEAGFGDAVVQHYGSPKEVNIRV--APKDDADADKVGQNVFNVLKEHNADLELLKVEF 122 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VGP++ EL + ++++ M++Y+W RF F + + L D+ LG FAL Sbjct: 123 VGPQVGDELRDESGTAMLLALGLMMLYVWFRFSNKFGVATVLALFHDVIIVLGLFALIQW 182 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 F+LT +AAVL LIGYS+ND +VV DR+R++ + T +I+ ++N+T R++ TS Sbjct: 183 PFDLTVLAAVLALIGYSLNDSIVVADRIREDFRS-TRETDPVAIINGAVNQTFTRTINTS 241 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + + ++ + +GG V+ +F+ + G++V SSI++ + IL + + Sbjct: 242 VTTLLVLVALYFFGGEVMRAFSEALLVGVLVGTYSSIYVVSNILFMMKVSKE 293 >gi|302343216|ref|YP_003807745.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Desulfarculus baarsii DSM 2075] gi|301639829|gb|ADK85151.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Desulfarculus baarsii DSM 2075] Length = 1055 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I GLL + ++P+ P + + ++ Sbjct: 8 RPIFAWVIAIVIMLAGLLAI-----GTLPVAQYPAIAP-------------TAVQIDATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + +K I S I L+F + +V Sbjct: 50 PGASAKTLEDTVTQVIEQKMKGIDHLSYISSTSDSAGSASIILTFDAGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ S L D +K + + +++ + I+ S + D + Sbjct: 110 KLQLAMSLLPQDVQKQGVRVSKASASFLMVVGFYSEDGSMSPIDLSDYVAAHVQDVLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L + + N G + Sbjct: 170 DGVGDVTLFGSQ-YAMRVWLDPNKLNNYKLMPSDIEAAIQAQNVQVSAGQLGGAPAVEGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + I Sbjct: 229 QLNATIAAQSRL-------------QTPEQFGDILLRVNTDGSKVLLRDVARIELGSENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A + + Sbjct: 276 ETIPRFNGKPSAGLAIKLTTGANALDTSTAVRQELAEMSKLFPAGMKVVYPYDTTPFVRV 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T A LV +V+F+ + + L+ ++ + ++ T +L+ G ++ ++ Sbjct: 336 SIEEVVKTLAEAIVLVFLVMFLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMRDEGLSPKEATRKSMDQITGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVVVALVLTPALCATMLKPLDGHDHQAKRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R + + +L S+ L + +G I V Sbjct: 516 NRSFQRGNQACQTVSGSIIRRWPRYMLLYVLLIGGMSLMFLRLPTSFLPDEDQGFIMTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ ++ + + + F V G K Sbjct: 576 QLPPGATQERTLEVMKEVERHYLQDEKDTVKCIFTVVGFSFAGQGQNMGMAFIDFKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 P + + + Sbjct: 636 RNSPELRADAVAGRAMQAFSGIRDAMVFA 664 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 8/180 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 S A + L + K + + +T E+++ +++ + M +++ Sbjct: 301 DTSTAVRQELAEMSKLFPAGMKVVYPYDTTPFVRVSIEEVVKTLAEAIVLVFLVMFLFLQ 360 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 + L + + + T G A FG N + A++ IG V+D +VV + + Sbjct: 361 ---NFRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV- 416 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 + +S ++ KS+++ G V +M +PMA +GGS F+I + Sbjct: 417 -ERVMRDEGLSPKEATRKSMDQITGALVGIAMVLSAVFVPMAFFGGSTGVIYRQFSITIV 475 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 73/202 (36%), Gaps = 9/202 (4%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E ++ L + G L + +S + + + + ++ W Sbjct: 837 EAMRAMEELASKLPAGIGYQWTGLSYQERLSGSQAPALYALSTLVVFLCLAALYESWSIP 896 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + L+ Sbjct: 897 FAVLLAVPLGVIGALLATSLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKD---LHEK 953 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TSMA + VLP+A+ G + + G++ A Sbjct: 954 GMDLVKATIEALRLRLRPIIMTSMAFILGVLPLAITTGAGAGSQNAIGTGVMGGMISATV 1013 Query: 811 SSIFIAAPILLFIYDWRAKNAR 832 + I P+ I + + Sbjct: 1014 LGV-ILVPLFFVIVRRFFGDKK 1034 >gi|283788091|ref|YP_003367956.1| acriflavin resistance protein F [Citrobacter rodentium ICC168] gi|282951545|emb|CBG91244.1| acriflavin resistance protein F [Citrobacter rodentium ICC168] Length = 1037 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 71/684 (10%), Positives = 188/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +L ++ G L L Q + ++P+ P Sbjct: 7 QRPIFAWVLAIILMLAGALAIL-----QLPVAQYPTIAPPAV---------SVSATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPQTTQDDISDYVASNVKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPDEFAKVTLRVNSDGSVVRLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T A L + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELEPFFPQGMKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIVLVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + +++ + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526 FGG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKGGFFGWFNAR 518 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + ++ + + V ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRKTGRYLVVYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 AGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERSG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 +++++ + ++ + Sbjct: 639 EENSVESVIARATRAFSQIRDGMV 662 Score = 74.3 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + + L +++ ++ ++ P Sbjct: 260 VRLKDVARIELGGENYNVVARINGKPASGLGIKLATGANALDTATAIKAKLAELEPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVVYPYDTTPFVKISIHEVVKTLFEAIVLVFLVMYLFLQNIRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 60.1 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMALMENLASKLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGR 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|200387973|ref|ZP_03214585.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605071|gb|EDZ03616.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 1037 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|204929544|ref|ZP_03220618.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321263|gb|EDZ06463.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 1037 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + ++L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYALLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|145637216|ref|ZP_01792878.1| preprotein translocase subunit SecD [Haemophilus influenzae PittHH] gi|145269661|gb|EDK09602.1| preprotein translocase subunit SecD [Haemophilus influenzae PittHH] Length = 605 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + S N + GLDLRGG ++EVD + + + D LR L+KE I +++ Sbjct: 99 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 158 Query: 93 QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + ++ A+ + + + I++ LS Sbjct: 159 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 207 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA Sbjct: 208 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 267 Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V N + D G+ + + + G H+ +++ D + Sbjct: 268 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 327 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 P V ++ D G + T+ KP+A + Sbjct: 328 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 387 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q QI+G +I A L+ +L++G+L + IVEER +G LG+ ++ +G A Sbjct: 388 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 447 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GLV ++ FM+ Y +G++A F++ +N++L + L+S+L ATL++P IAGIVL +G++ Sbjct: 448 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 507 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ ERI+EE R +S+ +++ G++ A+++IFD+N+T ++ ++L+ G G ++G Sbjct: 508 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 567 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 FAIT+ L + ISMFTAI+ RA++ + K++K + Sbjct: 568 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 603 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +GI + +A++ ++ +K F + A L+++I +G ++ Sbjct: 430 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 488 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G SV+ V++++R+++ ++ S + I++ N Sbjct: 489 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 545 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G I FAI ++ G+ ++ ++I ++ +Y + Sbjct: 546 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 602 >gi|118594455|ref|ZP_01551802.1| protein export protein SecF [Methylophilales bacterium HTCC2181] gi|118440233|gb|EAV46860.1| protein export protein SecF [Methylophilales bacterium HTCC2181] Length = 311 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 155/288 (53%), Gaps = 3/288 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I FM+ R IS L + +I L GLN G+DF GG + V ++ +R L Sbjct: 10 IPFMKYRGISAVISTLIFVLAIAFLSIKGLNLGVDFTGGTIMEVSYPEAANIENIRETLV 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 +L + D QNF + L+RL P ++ + E V + I E VG Sbjct: 70 TLDLTDTQVQNFGTANDVLIRLPIIP--DLSIAELSEKVAVALKAGNRDVEIMRVESVGA 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ EL G + ++ + +++Y+ +RF+W FA+ AI + D+ LGFFA F EFN Sbjct: 128 QVGDELYEDGALAILFVCLGIVLYLTMRFEWRFAIAAIVANLHDVIIILGFFAFFQWEFN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AAVL ++GYSVN+ VVV+DR+R+N + S D+I+ +I T+ R++ T ++ Sbjct: 188 LTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRK-ASVEDVINNAITRTMSRTIMTHLST 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 V+ M ++GG ++ +FA+ + GI+ SSI + P+ +++ + Sbjct: 247 QTVVISMLIFGGEILNNFALALTIGILFGIYSSIMVGCPLAMWLGTSQ 294 >gi|50085971|ref|YP_047481.1| acridine efflux pump [Acinetobacter sp. ADP1] gi|49531947|emb|CAG69659.1| putative RND family (AdeB-like) [Acinetobacter sp. ADP1] Length = 1059 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 67/552 (12%), Positives = 150/552 (27%), Gaps = 41/552 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPK-------------VTISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAQTVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIELNFEQGIDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVKVTKSGASFMQVIAFYSPDGSLSGSDIKDYVNSNISEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + +S N G D Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDISTALNAQNAQVAVGQLGGAPAVDGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + + Sbjct: 229 VLNATVNAQSLL-------------QTPEQFRNIFLKNTSTGAKVLLKDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + LR + + Sbjct: 276 QFDSKFDGKPAGGVAIKLATGANALDTAKAVEARLVELRKNYPAGLKDKLAYDTTPFIRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A+++L G T+ ++ Sbjct: 336 SIESVVHTLIEAIVLVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINLFGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL----DMGFSRAYSTIFDSNITALIA 473 +VL IGL VD I+V E + + + + S A I I Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATEQSMQQISGALIGITSVLSAVFIP 455 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 G R F+IT+ ++++S+ A++ A+ +++ + N + F Sbjct: 456 MAFFSGTTGVIYRQFSITLVTAMVLSLVIALTFTPALCATLLKQHDPNKKESNHIFARFF 515 Query: 534 IPDCIAIQFMRA 545 + Sbjct: 516 RWFNRTFDRLSH 527 Score = 80.9 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 86/254 (33%), Gaps = 8/254 (3%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 V L V + + +++ + +E ++ Sbjct: 255 STGAKVLLKDVARVELGSDNYQFDSKFDGKPAGGVAIKLATGANALDTAKAVEARLVELR 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 + P R I + +I + + + I +++ + W + + + Sbjct: 315 KNYPAGLKDKLAYDTTPFIRLSIESVVHTLIEAIVLVFIVMFLFLQNWRATIIPTLAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T LFG N + A++ IG V+D +VV + + + + Sbjct: 375 VVLGTFAVINLFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATE 432 Query: 763 KSINETLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAP 818 +S+ + G + TS+ + +PMA + G VI F+I + +V++ ++ Sbjct: 433 QSMQQISGALIGITSVLS-AVFIPMAFFSGTTGVIYRQFSITLVTAMVLSLVIALTFTPA 491 Query: 819 ILLFIYDWRAKNAR 832 + + N + Sbjct: 492 LCATLLKQHDPNKK 505 Score = 54.3 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 72/244 (29%), Gaps = 13/244 (5%) Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 E + + S + +E + K+ + + Sbjct: 810 EWTYGSPRLERYNGVSSVNIQGSPATGVSSGDSMKAMEEIVNKLPSMGLQGFDYEWTGLS 869 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL----DITKTLGFFALF 714 + + + + I L + W + + L + T + Sbjct: 870 LEERESGAQAPFLYALSLLIVFLCLAALYESWSIPFSVLLVVPLGVVGAVLLTYLGMVIK 929 Query: 715 G---IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 G + N+ A++ +IG S + +++ + ++ L + + L Sbjct: 930 GDPNLSNNIYFQVAMIAVIGLSAKNAILIVEFAKE---LQEKGEDLLEATLHAAKMRLRP 986 Query: 772 SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + T++A VLP+A+ G S + G++ + IF ++I Sbjct: 987 IIMTTLAFGFGVLPLALASGAGAGSQHSVGYGVLGGVITSTLLGIFFIPIFFVWIRGVFK 1046 Query: 829 KNAR 832 + Sbjct: 1047 YKPK 1050 >gi|87121908|ref|ZP_01077793.1| secretion protein SecD [Marinomonas sp. MED121] gi|86162706|gb|EAQ63986.1| secretion protein SecD [Marinomonas sp. MED121] Length = 615 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 156/523 (29%), Positives = 273/523 (52%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 +++ P + LGLDLRGG H +LEVD + +++ S E+++ L+++ + Sbjct: 105 NLVPTTPDWLASFGAGPAKLGLDLRGGVHFLLEVDTPAALEQRMEVASAEMKTLLRQQKV 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + + F F ++ + + Sbjct: 165 RYRKVSVDAGVLKIRFLQQAFLTRAETLLSEEFPEYIYSTQAQEGEFY--------LMAS 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 S+++ ++ ++A++Q++ +R R++++G++E +QR GS+RI+++LPG QD + ++++ Sbjct: 217 YSESSKAEIEAYALQQNLTTLRNRVNELGVAEPLVQRQGSNRIVVELPGVQDTAAAKRII 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F P + V RD G +E + I+G ++ A+++FD Sbjct: 277 GATANLEFRLEAP---LEADDVEVMTFRDGSGRTARLERDLIITGDSVSDASSSFDENGM 333 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 V+IS D G ++ +VTR ++G+ +AVV + + Sbjct: 334 PQ-VNISLDSKGGKQMAKVTRTSVGRNMAVVFIEHKSRSRFVEDENGKAQEVRQSYSEKG 392 Query: 309 ------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 Q +I+G + + LA +LRAG+L + VEER VG LG ++I Sbjct: 393 IISLATIQTTLGNAFRITGLDSSRESSELALLLRAGALAAPIYFVEERTVGPSLGEENIR 452 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 G + GL++++LFM+ Y +GL A+ S+ +N++L +A +SLLGATLTLP IAGIVL Sbjct: 453 LGVVSAQIGLLVVMLFMLAYYRVFGLFANISLAINIVLLMACMSLLGATLTLPGIAGIVL 512 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+AVD+N+L+ RI+EE ++ GF+RA++TI D+NIT L+ V+LF G Sbjct: 513 TMGMAVDANVLIFSRIKEELASGLPTQQAIYSGFNRAFTTILDANITTLLVAVILFAVGT 572 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G+V+GFA+T+ L I+ SMFTAI + RA + +K + I Sbjct: 573 GSVKGFAVTLSLGIITSMFTAIIVTRAQANLVYGGRKDARLSI 615 Score = 148 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 100/248 (40%), Gaps = 5/248 (2%) Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 +R V+ ++ + + + L G ++ + + + Sbjct: 371 SRFVEDENGKAQEVRQSYSEKGIISLATIQTTLGNAFRITGLDSSRESSELALLLRAGAL 430 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 VGP + E IR G+V I + +++++ ++ F L A +L ++I Sbjct: 431 AAPIYFVEERTVGPSLGEENIRLGVVSAQIGLLVVMLFMLAYYRV-FGLFANISLAINIV 489 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 + +L G L +A ++ +G +V+ V+++ R+++ + + + + I Sbjct: 490 LLMACMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIKEELA---SGLPTQQAIYSGF 546 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 N + ++ + + + G + FA+ ++ GI+ + ++I + +Y Sbjct: 547 NRAFTTILDANITTLLVAVILFAVGTGSVKGFAVTLSLGIITSMFTAIIVTRAQANLVYG 606 Query: 826 WRAKNARI 833 R K+AR+ Sbjct: 607 GR-KDARL 613 Score = 48.1 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 52/189 (27%), Gaps = 32/189 (16%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L + +GLL ALPN P L++ Sbjct: 4 KYPLWKYLLILFVLALGLLYALPNLYPDDPA-------------------------LQLS 38 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + L+K I + + N TL F + V L Sbjct: 39 TQKATVSIDENVISKAERALEKANIELKASELTSNGATLRFNSGIDQLAAKPVVAAALGE 98 Query: 122 ----VNSKLNVDPKKNLLVTTTEKEISIVL---SQNNIDQVISHAIEQSMEIIRQRIDQI 174 + + P ++ + L ++ A+EQ ME+ + + Sbjct: 99 NYVTALNLVPTTPDWLASFGAGPAKLGLDLRGGVHFLLEVDTPAALEQRMEVASAEMKTL 158 Query: 175 GISESTIQR 183 + R Sbjct: 159 LRQQKVRYR 167 >gi|239501674|ref|ZP_04660984.1| preprotein translocase subunit SecF [Acinetobacter baumannii AB900] Length = 321 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 4/310 (1%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 M + P ++ D I FM+ SIL ++ SI + T GLN G+DF GG Sbjct: 1 MMTKVTQQPSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + +P + + V L+ D Q K+ LVR+ Q + + Sbjct: 61 VSAELNYAQPANQAEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQDIKVE---DLNNTI 117 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 K + + + + VG ++ EL + V ++ I MLIY+ IRF++ A+GA+ Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 +L DI +G FALF F+LT +AAVL +IG+S+ND +VV DR+R+N + + R Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 +++D ++ ETL R+++TSM + VL M GG + F++ M G+ V SSI+I Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296 Query: 819 ILLFIYDWRA 828 L+ R Sbjct: 297 FALWRGLNRQ 306 >gi|82775807|ref|YP_402154.1| acridine efflux pump [Shigella dysenteriae Sd197] gi|81239955|gb|ABB60665.1| acridine efflux pump [Shigella dysenteriae Sd197] Length = 1049 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVATNMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVIYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + I++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVIYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 58.2 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALHESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|262281061|ref|ZP_06058843.1| protein-export membrane protein SecF [Acinetobacter calcoaceticus RUH2202] gi|262257292|gb|EEY76028.1| protein-export membrane protein SecF [Acinetobacter calcoaceticus RUH2202] Length = 321 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 99/310 (31%), Positives = 155/310 (50%), Gaps = 4/310 (1%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 M + ++ D I FM+ SIL ++ SI + T GLN G+DF GG Sbjct: 1 MMTKVTQQDSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + +P + S V L+ D Q K+ LVR+ Q + + Sbjct: 61 VSAELNYAQPANQSEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQEVKVE---DLTNTI 117 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 K + + + + VG ++ EL + V ++ I MLIY+ IRF++ A+GA+ Sbjct: 118 TKAVQLSNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 +L DI +G FALF F+LT +AAVL +IG+S+ND +VV DR+R+N + + R Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 ++ID ++ ETL R+++TSM + VL M GG + FA+ M G+ V SSI+I Sbjct: 237 EIIDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFAVAMFVGVFVGTYSSIYIGTA 296 Query: 819 ILLFIYDWRA 828 L+ R Sbjct: 297 FALWRGLNRQ 306 >gi|168239423|ref|ZP_02664481.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736548|ref|YP_002116340.1| AcrB protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204931225|ref|ZP_03222019.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712050|gb|ACF91271.1| AcrB protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287904|gb|EDY27292.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204319992|gb|EDZ05198.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322614532|gb|EFY11462.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618246|gb|EFY15137.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625959|gb|EFY22773.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626729|gb|EFY23526.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631297|gb|EFY28057.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635436|gb|EFY32150.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643436|gb|EFY40000.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647260|gb|EFY43758.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649724|gb|EFY46151.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655602|gb|EFY51908.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658368|gb|EFY54633.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664990|gb|EFY61180.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667372|gb|EFY63534.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674620|gb|EFY70712.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675749|gb|EFY71822.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682385|gb|EFY78408.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684750|gb|EFY80751.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193242|gb|EFZ78458.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196738|gb|EFZ81883.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205063|gb|EFZ90045.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207723|gb|EFZ92670.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209987|gb|EFZ94892.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214298|gb|EFZ99051.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219025|gb|EGA03531.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225157|gb|EGA09405.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230405|gb|EGA14524.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233381|gb|EGA17475.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239418|gb|EGA23468.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242331|gb|EGA26357.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247315|gb|EGA31280.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250405|gb|EGA34289.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256853|gb|EGA40568.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263863|gb|EGA47382.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264116|gb|EGA47624.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271625|gb|EGA55044.1| AcrB protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 1037 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 74/684 (10%), Positives = 186/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPQEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T A L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ S + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529 FGG R F+IT+ ++ +S+ A+ + A+ + KK Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518 Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + R + + ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 95/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T ++ ++ P + I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++S R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|167552896|ref|ZP_02346647.1| AcrB protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322548|gb|EDZ10387.1| AcrB protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 1037 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 74/684 (10%), Positives = 186/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T A L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ S + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529 FGG R F+IT+ ++ +S+ A+ + A+ + KK Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTK 518 Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + R + + ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T ++ ++ P + I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++S R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|50083823|ref|YP_045333.1| preprotein translocase subunit SecF [Acinetobacter sp. ADP1] gi|49529799|emb|CAG67511.1| preprotein translocase, IISP family, membrane subunit [Acinetobacter sp. ADP1] Length = 322 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 95/310 (30%), Positives = 160/310 (51%), Gaps = 3/310 (0%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 M + ++ + I FM+ S+L ++ SI + T GLN G+DF GG Sbjct: 1 MMTDMTQPKPKQYGRPDNERVIPFMKIAKPAAIFSVLLTLASIFFIVTKGLNLGLDFTGG 60 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + ++PV+ S V L+ D Q K+ +VR+ Q D + + + Sbjct: 61 VSAELNYSQPVNQSAVSQALDKAGFKDAVVQTLGSNKDLIVRMPVQ--DDLKVDDLSNAL 118 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 K + + + + VG ++ EL + V ++ I ML+Y+ IRF++ A+GA+ Sbjct: 119 TKAVQLPNNTAVVHKVDAVGGQVGNELYIRSAGAVALALILMLVYVTIRFEFKLAMGAVM 178 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 +L DI +G FALF +F+LT +AAVL +IG+S+ND +VV DR+R+N + + R Sbjct: 179 SLFHDIIIIIGAFALFQWQFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 237 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 +++D ++ ETL R+++TSM + VL M GG + F++ M G+ V SSI+I Sbjct: 238 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLKWFSVAMFVGVFVGTYSSIYIGTA 297 Query: 819 ILLFIYDWRA 828 L+ R Sbjct: 298 FALWRGLNRQ 307 >gi|261491627|ref|ZP_05988210.1| preprotein translocase subunit SecD [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312753|gb|EEY13873.1| preprotein translocase subunit SecD [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 613 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 165/523 (31%), Positives = 282/523 (53%), Gaps = 40/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + GLDL GG ++EVD + + D LRS +KE + Sbjct: 104 NLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKL 163 Query: 87 GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N T + FAD+ E V L + + ++++ Sbjct: 164 QYQAVKKGENFATEVEFADNDTAEKAVRLVRR------------SHPTLDILVNDNKVTL 211 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S + + + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 212 TPSAQALSESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 271 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + G+ DG ++ K + G H+ AT+ Sbjct: 272 LGATATLEFRLVNTEANVASAAKGIVPADSELQNTRDGEPVVLRRKPSLGGEHIIDATSG 331 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD------------------GRV 302 D + V I D G E+T+ I KP+A + + Sbjct: 332 TDERGLPQ-VSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQE 390 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 391 VINVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK 450 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A + GL L +LF + Y +G+ A ++ +N+ILT+ L+SL+GATLT+P IAGIVL Sbjct: 451 QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVL 510 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R + + ++ G++ A+S+IFDSN+T ++ ++VL+ G Sbjct: 511 AVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGT 570 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ L ++ISMFTAI+ R ++ ++ K++K + I Sbjct: 571 GPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI 613 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 83/176 (47%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + +++G+ I+ +++ +K F + A LI+++ T+G +L G Sbjct: 439 TIGASLGADNVKQGMEASILGLGLTILFCLAFYKV-FGIFASLALIVNMILTIGLMSLIG 497 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ + I + N + Sbjct: 498 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEEIR---NGRPIQQAIHEGYNGAFSSIFDS 554 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ L + G + FA+ +A G++++ ++I ++ ++Y + Sbjct: 555 NLTTILTSLVLYGVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKK 610 >gi|110833825|ref|YP_692684.1| AcrB/AcrD/AcrFa family protein [Alcanivorax borkumensis SK2] gi|110646936|emb|CAL16412.1| AcrB/AcrD/AcrFa family protein [Alcanivorax borkumensis SK2] Length = 1041 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 71/689 (10%), Positives = 187/689 (27%), Gaps = 50/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L ++++P+ P + + + Sbjct: 8 RPIFAWVIAIIMMMAGALAI-----YTLPIEQYPTVAPP-------------QVSIAGNY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S + L+FA + +V Sbjct: 50 PGASAKTVEDSVTQVIEQQMNGIDNLLYMSSSSDSFGNAAVNLTFAPGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + T + ++++ + + + + D + Sbjct: 110 KLQLATPLLPQEVQQQGMQVTKSSDSFLMVAGFTSEDGSLSRADLADYVASNVQDPVSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q + DP++L + T ++ + NN G + Sbjct: 170 PGVGQIQLFGSP-YAMRVWLDPNKLNKFDLTPQDVTQTIEVQNNQVASGQLGGAPAVEGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + R F + Sbjct: 229 QLNATIIAQTRLEDVD-------------QFENILLKVNPDGSRVFLKDVARVELAAQNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 S + T E A L+ + Sbjct: 276 DVQGRYNGQPAAGLAISLATGANALDTAEALRARLAELQPYFPDKMEMVFPYDTTPFVSI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIEEVVHTLFEAIILVFLVMYLFLQNFRATLIPTLAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMHEEGLPPKEATRKSMGQITGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524 + FF G R F+IT+ ++++S+ A+ + A+ + + + Sbjct: 456 MAFFPGSTGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKAKDSEHQTDHGFFGWFN 515 Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + R + ++ + + + +G + V Sbjct: 516 RTFDKSSRRYQGSVEKILGRRGRYLFIYVVIVGVLGFSFMRLPSSFLPEEDQGILFTLVT 575 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 LE ++ ++ + + F V G +K Sbjct: 576 LPAGSTQEQTVKVLEKMEDYYLNEEASAVDGLFTVAGFSFTGRGQNAGMAFVNLKDWSER 635 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGV 673 + + N + + + Sbjct: 636 DLSVDGADNVVARAMGYFSTIREAMMFAL 664 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 83/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + Q D+ + L +++ L ++ Sbjct: 258 SRVFLKDVARVELAAQNYDVQGRYNGQPAAGLAISLATGANALDTAEALRARLAELQPYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P I + + + + I + + +++ + + L + + + Sbjct: 318 PDKMEMVFPYDTTPFVSISIEEVVHTLFEAIILVFLVMYLFLQNFRATLIPTLAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + ++ + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMHEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +PMA + GS F+I + +V++ ++ + + Sbjct: 436 GQITGALVGIALVLSAVFVPMAFFPGSTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 64.7 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 28/248 (11%), Positives = 72/248 (29%), Gaps = 13/248 (5%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V N+ + G + ++G + ++ PG S Sbjct: 788 VRNNQGKMVPFSTFATGHWTYGSPKLERYNGVSSVNIQGNAAPGYSTGDAMDAMEELSAK 847 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + ++ +++ + + + W L++ Sbjct: 848 LPAGFGFEWTGMSYQERQSGDQAPALYVISLLVVFLCLA---ALYESWSIPFA--VMLVV 902 Query: 703 DITKTLGFFALFGIEFNLTAVA--AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + A + N +LT IG S + +++ + + L Sbjct: 903 PLGILGAVLAATFRDLNNDVFFQVGLLTTIGLSAKNAILIAEFALE---LEQKGEHLLKA 959 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817 +++ L + TS+A + V P+ + G + + G++ A +IF Sbjct: 960 TLEAVRMRLRPILMTSLAFMLGVTPLMISTGAGAGARNAIGTGVFGGMLTATVLAIFFIP 1019 Query: 818 PILLFIYD 825 + + Sbjct: 1020 LFYVAVRK 1027 >gi|168261485|ref|ZP_02683458.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349333|gb|EDZ35964.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 1037 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQTTITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|195939714|ref|ZP_03085096.1| putative multidrug-efflux transport protein [Escherichia coli O157:H7 str. EC4024] gi|254792882|ref|YP_003077719.1| putative efflux pump [Escherichia coli O157:H7 str. TW14359] gi|261224277|ref|ZP_05938558.1| putative efflux pump [Escherichia coli O157:H7 str. FRIK2000] gi|261257467|ref|ZP_05950000.1| putative efflux pump [Escherichia coli O157:H7 str. FRIK966] gi|254592282|gb|ACT71643.1| putative efflux pump [Escherichia coli O157:H7 str. TW14359] gi|320637189|gb|EFX07015.1| putative efflux pump [Escherichia coli O157:H7 str. G5101] gi|320642556|gb|EFX11804.1| putative efflux pump [Escherichia coli O157:H- str. 493-89] gi|320647909|gb|EFX16617.1| putative efflux pump [Escherichia coli O157:H- str. H 2687] gi|320664003|gb|EFX31190.1| putative efflux pump [Escherichia coli O157:H7 str. LSU-61] Length = 1029 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + K + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDKGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFDRFYRRT 519 Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592 Q R + + + L L ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 80.9 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDKGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 >gi|168232027|ref|ZP_02657085.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471270|ref|ZP_03077254.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457634|gb|EDX46473.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333669|gb|EDZ20433.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 1037 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFKVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|213970267|ref|ZP_03398397.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato T1] gi|301382925|ref|ZP_07231343.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato Max13] gi|302133534|ref|ZP_07259524.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924939|gb|EEB58504.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato T1] Length = 1044 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 69/687 (10%), Positives = 182/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------AIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVRDAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLRDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLLGTFGILAGFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ K+ F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ I+ I + + D G+ + Sbjct: 520 FDRSVVSYERGVGNMLKHKWLSYLGYIVIFAGMIFMFMRIPAAFLPDEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + ++ Sbjct: 640 ENSVFKLAERAQGYFFSLRDAMVFAIV 666 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLRDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I+ + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESIKGVVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAGFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 68.2 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + A V S S + +S N + L Sbjct: 778 RMTPEDLKKWYVRNSAGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEILGTPAPGYSSGD 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLTDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + I + Sbjct: 1009 ITAVVLAIFWVPLFFVSISGLFKSKQK 1035 >gi|56412637|ref|YP_149712.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361572|ref|YP_002141208.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126894|gb|AAV76400.1| putative efflux pump [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093048|emb|CAR58486.1| putative efflux pump [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 1037 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MTFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PM +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMTFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 67.8 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPM Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMTTSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|197363290|ref|YP_002142927.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197094767|emb|CAR60300.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 1049 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 67/686 (9%), Positives = 175/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIF-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + +P+ L + T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + I Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + P + S Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + + I+ + + + +G V Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|309388957|gb|ADO76837.1| protein translocase subunit secF [Halanaerobium praevalens DSM 2228] Length = 286 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 157/287 (54%), Gaps = 6/287 (2%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 R +S+ + + L +GLN GIDF GG + + VR L+S+ I Sbjct: 5 GKRKIWYILSLTIIVIGLGFLLINGLNLGIDFNGGTLMEFSFKEDIGTEAVRDVLQSIDI 64 Query: 604 G-DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 D Q+ +G + ++ +S + + + + + TE+VGP I Sbjct: 65 AADSKLQHSEGSGENGIIIRASSLESEEIIAIDDAIHSEFESAE----MLRTEMVGPTIG 120 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 REL ++ +I+++IA++ YI RF++ FA +I TL+ DI T+G FA+ G E N Sbjct: 121 RELRINALLAMIVASIAIVAYISFRFEFRFAAVSIITLMHDILITIGIFAMLGREVNTAF 180 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 VAA+LT++GYS+ND +V++DR+R+NMKL F + + ++ +TL RS+ TS+ I+ Sbjct: 181 VAALLTIVGYSINDTIVIFDRIRENMKLM-HKAPFIEQANTAVVDTLPRSINTSITTLIT 239 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 +L + +GG+ I +F + + G+ SSIF+A+P+L+ + +K Sbjct: 240 ILAIYFFGGASIQTFMLALFIGMFAGTYSSIFVASPLLVTWEEKISK 286 >gi|62181898|ref|YP_218315.1| multidrug transporter acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129531|gb|AAX67234.1| RND family, multidrug transport protein, acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 1037 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 74/684 (10%), Positives = 186/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T A L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ S + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529 FGG R F+IT+ ++ +S+ A+ + A+ + KK Sbjct: 459 FGGSTRAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518 Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + R + + ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T ++ ++ P + I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GS 796 V + + + ++S R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTRAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQEPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|310829084|ref|YP_003961441.1| hypothetical protein ELI_3519 [Eubacterium limosum KIST612] gi|308740818|gb|ADO38478.1| hypothetical protein ELI_3519 [Eubacterium limosum KIST612] Length = 314 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 143/282 (50%), Gaps = 4/282 (1%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 I+I+ + S+ L GLN+GIDF GG + + + + R + Sbjct: 9 KSKIWFSIAIVLVLISVGSLLIRGLNFGIDFVGGTIVTIDLHTQFNTDDARQ-ITDQYDK 67 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 ++ +V + D+ + + K K + + + + V + E Sbjct: 68 SAEITYAGDGQDRIVISTKESLDTDQRKELFNQFKDKYSLQDSD--LVSVDTVTATVGSE 125 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 R +V I+ + MLIYI RF++YF L AI L+ DIT +G +ALF I+ N +A Sbjct: 126 TARNAVVASAIAVLLMLIYITFRFEFYFGLSAIIALLYDITIVIGVYALFQIQVNAPFIA 185 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT++GYS+ND +VV+DR+R+N +L++ S+++TL RS+ T + +++L Sbjct: 186 AILTILGYSINDTIVVFDRIRENETRIGMR-DINELVNVSVSQTLKRSINTVVTTLLAIL 244 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + ++G I SFA+P+ GIV SSIF+A+P+ + Sbjct: 245 ALYIFGVEAIRSFALPLIVGIVSGCYSSIFVASPLWVQFQKR 286 >gi|188534662|ref|YP_001908459.1| preprotein translocase subunit SecD [Erwinia tasmaniensis Et1/99] gi|188029704|emb|CAO97583.1| Protein-export membrane protein [Erwinia tasmaniensis Et1/99] Length = 615 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 158/518 (30%), Positives = 280/518 (54%), Gaps = 37/518 (7%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + + + + LGLDLRGG H ++EVD D + D LRS L+++ I ++R Sbjct: 110 PAWLAMLSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYINVR 169 Query: 93 QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + N + + F D + ++ +T + ++ ++ ++ V+S Sbjct: 170 KTANYGLEIRFRDDKARDAAISYLTTRHR-----------DMVINSSGSNALTAVMSDER 218 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++LG TA Sbjct: 219 MREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATAT 278 Query: 212 MSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V + G +G ++ +V ++G H+ +T++ D Sbjct: 279 LEFRLVNTSVDATSAANGRIPGDSEVKDTREGQPVVLYKRVILTGDHITDSTSSTDEYN- 337 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 +P V+IS D G T+D++GK +A + + Sbjct: 338 QPQVNISLDSAGGNIMSNFTKDSVGKAMATLFVEYKDSGKKDANGRAILEKHEEVINVAN 397 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q+ +I+G A L+ +LRAG+L + IVEER +G +G+ +I +G A Sbjct: 398 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEAC 457 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GL+ ++FM+V Y K+GLVA ++ N++L + ++SLL ATLT+P IAGIVL + +A Sbjct: 458 LWGLIASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA 517 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI ++L+ G G+++G Sbjct: 518 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 577 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 FAIT + + SMFTAI RA++ + K++ + I Sbjct: 578 FAITTAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI 615 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 96/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ N ++ L G + + + Sbjct: 369 FVEYKDSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 428 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ + +K F L A + L+ ++ Sbjct: 429 LIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK-KFGLVATSALLANL 487 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ S + I + Sbjct: 488 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 V ++ I V+ + G I FAI A G+ + ++I I+ + Sbjct: 545 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLM 604 Query: 824 YDWRAKNA 831 Y + N Sbjct: 605 YGGKRINK 612 >gi|56415317|ref|YP_152392.1| multidrug transporter acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161616419|ref|YP_001590384.1| hypothetical protein SPAB_04228 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168233981|ref|ZP_02659039.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168245203|ref|ZP_02670135.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262581|ref|ZP_02684554.1| AcrB protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463368|ref|ZP_02697285.1| AcrB protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822705|ref|ZP_02834705.1| AcrB protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194451916|ref|YP_002047420.1| AcrB protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469230|ref|ZP_03075214.1| AcrB protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249559|ref|YP_002148316.1| AcrB protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197364247|ref|YP_002143884.1| acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224585189|ref|YP_002638988.1| RND family, multidrug transport protein, acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913529|ref|ZP_04657366.1| RND family, multidrug transport protein, acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56129574|gb|AAV79080.1| RND family, multidrug transport protein, acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161365783|gb|ABX69551.1| hypothetical protein SPAB_04228 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194410220|gb|ACF70439.1| AcrB protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455594|gb|EDX44433.1| AcrB protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633204|gb|EDX51618.1| AcrB protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095724|emb|CAR61294.1| RND family, multidrug transport protein,acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213262|gb|ACH50659.1| AcrB protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205332025|gb|EDZ18789.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336023|gb|EDZ22787.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340927|gb|EDZ27691.1| AcrB protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348406|gb|EDZ35037.1| AcrB protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469717|gb|ACN47547.1| RND family, multidrug transport protein, acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320087840|emb|CBY97604.1| Multidrug resistance protein mdtF [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 1037 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 74/684 (10%), Positives = 186/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T A L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ S + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529 FGG R F+IT+ ++ +S+ A+ + A+ + KK Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518 Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + R + + ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T ++ ++ P + I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++S R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|320353437|ref|YP_004194776.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Desulfobulbus propionicus DSM 2032] gi|320121939|gb|ADW17485.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Desulfobulbus propionicus DSM 2032] Length = 1048 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 72/689 (10%), Positives = 181/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++P P + + Sbjct: 8 RPIFAWVIAIVIMLAGALSIM-----RLPISQYPEIAPP-------------SVQITSKY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S Q ITL+F + +V Sbjct: 50 PGASAKTIEDSVTQIIEQNMNGLDNLLYMNSQSSSTGQVTITLTFEAGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ S L + + + T +++ + + S ++ D + + Sbjct: 110 KLQQALSLLPEEVQDEGVQVTKSNSTFLMIVGLISEDGSMDKNDLSDFMVSTLRDPLSRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + NN G Sbjct: 170 RGVGSIRIFGSQ-YAMRIWLDPHKLNSYQLTPVDIKAAIQAQNNQVAVGDLGGTPSTAGT 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 QVNA-------------SMMAQTKMSSPEQFAQILLKVNSDGSQIRLRDVARVEIGGETY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T + A L+ + Sbjct: 276 DSLTTFNGMPASGMAIMLATGANALDTAKAVRDKLADLQPYFPAGVSVVYPYDTTTFIKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +++ G ++ ++ Sbjct: 336 SIEEVAHTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERIMAEEGLSPLEATRKSMDQITGALIGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCATLLKPVKKGHHEQKRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + +A R +G+ +L + + +G V Sbjct: 516 NRTFERSADGYRNSVAYVLKRTGRFGLIYLLLIGGMAFLFTKLPTSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ L ++ + + + + F V G V ++ Sbjct: 576 QLPTGATQERTQAILNQVRDHYLVKEKENVKSAFTVAGFSFAGTGQNMGMVFAQLRDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 P ++ ++ + Sbjct: 636 RKRPEQSVSGVIQRAMGTFMQIKEAQVFA 664 Score = 81.7 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 85/241 (35%), Gaps = 6/241 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + D + + + +++ + + + P Sbjct: 264 DVARVEIGGETYDSLTTFNGMPASGMAIMLATGANALDTAKAVRDKLADLQPYFPAGVSV 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + ++ + I + + +++ + + L + + + T G Sbjct: 324 VYPYDTTTFIKISIEEVAHTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVM 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + +S + KS+++ G Sbjct: 384 AAFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ERIMAEEGLSPLEATRKSMDQITGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + ++ +PMA +GGS F++ + +V++ ++ + + + Sbjct: 442 LIGIALVLSAVFVPMAFFGGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCATLLKPVK 501 Query: 829 K 829 K Sbjct: 502 K 502 Score = 80.1 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 51/444 (11%), Positives = 120/444 (27%), Gaps = 24/444 (5%) Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L+ + S + N+ + + + + S+ RA T Sbjct: 597 YLVKEKENVKSAFTVAGFSFAGTGQNMGMVFAQLRDWSERKRPEQSVSGVIQRAMGTFMQ 656 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 + A + G GF + + I ++ + + + Sbjct: 657 IKEAQVFAFNLPSIPALGTSTGFDFFLQDRAGLGHEKLIEARNMLLGLAAKNPNLTRVRP 716 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG------------- 572 N + I + A V + + + + Sbjct: 717 NGMEDTPQYNVDIDFEKAMALGVTVSDINTTLSTAWGSSYVNDFVHQGRVKKVYVQADAP 776 Query: 573 --IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630 + + V + + G + F+G + + PG S Sbjct: 777 YRMQPEDLDHWYVRNANGEMVPFSTFSSGHWSFGSPRLERFNGNSAVEIVGEAAPGKSSG 836 Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690 L + + + +++ + + + W Sbjct: 837 DAMTLIGDLVAQLPAGIGYEWTGASFQEQQAGAQAPALYAISILVVFLCLA---ALYESW 893 Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 I + L + L G+E ++ +LT IG S + +++ + + + Sbjct: 894 SVPFSVILAVPLGVLGALSAAYFRGMENDVYFQVGLLTTIGLSAKNAILIVEFAK---RR 950 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807 Y + K+ L + TS+A + VLP+A+ G + + + G++ Sbjct: 951 YDKGRDLVEATVKACRLRLRPILMTSLAFMLGVLPLAISSGAGANSRHAIGTGVLGGMLS 1010 Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831 A +IF + + K Sbjct: 1011 ATVLAIFFIPLFFVVVLRLFTKKR 1034 >gi|300715617|ref|YP_003740420.1| Acriflavine resistance protein B [Erwinia billingiae Eb661] gi|299061453|emb|CAX58567.1| Acriflavine resistance protein B [Erwinia billingiae Eb661] Length = 1050 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 63/570 (11%), Positives = 157/570 (27%), Gaps = 38/570 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G+L L + ++++P+ P V + Sbjct: 8 RPIFAWVIAIIIMLMGVLSIL-----KLPIEQYPNVAPPAVQ---------IRAVYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + + ++TL+F + +V LQ Sbjct: 54 AKTLQDSVTQVIEQNMNGIDGLMYMSSNSDSSGTLQLTLTFQSGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ + + S + D I + Sbjct: 114 ATPLLPQEVQQQGIQVQKSSSSFLMVAGFVSKDGSMNQNDISDYVASNIKDPISRTLGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L T + N+ G Sbjct: 174 DTQIFGAQ-YAMRIWMDPHKLNNYQLTPVDVISAIDSQNSQVAAGQLGGSPPVPGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + R I Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNADGSRVLLKDVARIELGGENYEIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T L + S Sbjct: 280 RYNGKPASGIGIKLATGANALDTAAAVKDELKKLEPFFPSGMETVYPYDTTPFVKISIIE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV IV+++ + + L+ ++ + ++ T A++S G ++ ++ G+V Sbjct: 340 VVKTLIEAIVLVFIVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEGLPPKEATKKSMEQIQGALVGIALVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG R F+IT+ ++++S+ A+ + A+ +K + + Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVIVALVLTPALCAT-----MLKPVKKGDHGKTTGFFGW 514 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567 F ++ + L + Sbjct: 515 FNRMFDKSTNHYTNSVGHIIRSTGRYLVIY 544 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 86/242 (35%), Gaps = 7/242 (2%) Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 V R L I+ N ++L V + +KK Sbjct: 264 DVARIELGGENYEIIARYNGKPASGIGIKLATGANALDTAAAVKDELKKLEPFFPSGMET 323 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 P + +I + +I + + + I +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIIE-VVKTLIEAIVLVFIVMYLFLQNFRATLIPTIAVPVVLLGTFAI 382 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 + FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 383 ISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATKKSMEQIQG 440 Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 V ++ +PMA +GGS F+I + +V++ ++ + + + Sbjct: 441 ALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALVLTPALCATMLKPV 500 Query: 828 AK 829 K Sbjct: 501 KK 502 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMGLMEQIASQLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L F + G+ ++ V +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVIGALIFTTVRGLSNDVYFVVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + VLP+ + G + + G+V A Sbjct: 958 G--LVESTLEAVRMRLRPILMTSLAFILGVLPLTISTGAGSGAQNAVGTGVMGGMVTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 FAI 1018 >gi|156934958|ref|YP_001438874.1| hypothetical protein ESA_02808 [Cronobacter sakazakii ATCC BAA-894] gi|156533212|gb|ABU78038.1| hypothetical protein ESA_02808 [Cronobacter sakazakii ATCC BAA-894] Length = 1049 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 67/686 (9%), Positives = 174/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++PS P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLSIM-----KLPVAQYPSIAPPAVT---------INATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDGLMYMSSTSDSSGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVLGLINTDGSMKQEDIADYAGANIKDPISRTTGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DVQLFGSQ-YAMRIWLDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + R + Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSRVLLRDVAKVELGGENYDIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T E A L + S Sbjct: 280 RYNGQPAAGLGIKLATGANALDTAEAVRKTIAGLEPFFPSGLKVVYPYDTTPFVKISIFE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIALVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++++S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMVLSVIVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + + ++ + + + +G Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLLIVVAMAFLFIRLPSSFLPDEDQGVFLTMAQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + F V G +K Sbjct: 580 AGATQERTQKVLDEVTDYYLTQEKDNVNSVFTVNGFGFSGRGQNTGLAFVSLKNWDERPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 640 AENKVPAITGRAMGRFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 81/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + L +++ + + P Sbjct: 264 DVAKVELGGENYDIIARYNGQPAAGLGIKLATGANALDTAEAVRKTIAGLEPFFPSGLKV 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + + + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIFEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V ++ +PMA +GGS F+I + +V++ ++ + + Sbjct: 442 LVGIALVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMVLSVIVALILTPAL 492 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L T + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEQLASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 899 FSVMLVVPLGVIGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|254361839|ref|ZP_04977974.1| preprotein translocase subunit SecD [Mannheimia haemolytica PHL213] gi|153093374|gb|EDN74370.1| preprotein translocase subunit SecD [Mannheimia haemolytica PHL213] Length = 613 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 166/523 (31%), Positives = 283/523 (54%), Gaps = 40/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + GLDL GG ++EVD + + D LRS +KE + Sbjct: 104 NLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKL 163 Query: 87 GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N T + FAD+ E V L L + + ++++ Sbjct: 164 QYQAVKKGENFATEVEFADNDTAEKAVRLVRL------------SHPTLDILVNDNKVTL 211 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S + + + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 212 TPSAQALSESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 271 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + G+ DG ++ K + G H+ AT+ Sbjct: 272 LGATATLEFRLVNTEANVASAAKGIVPADSGLQNTRDGEPVVLRRKPSLGGEHIIDATSG 331 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD------------------GRV 302 D + V I D G E+T+ I KP+A + + Sbjct: 332 TDERGLPQ-VSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQE 390 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 391 VINVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK 450 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A + GL L +LF + Y +G+ A ++ +N+ILT+ L+SL+GATLT+P IAGIVL Sbjct: 451 QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVL 510 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R + + ++ G++ A+S+IFDSN+T ++ ++VL+ G Sbjct: 511 AVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGT 570 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ L ++ISMFTAI+ R ++ ++ K++K + I Sbjct: 571 GPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI 613 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 83/176 (47%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + +++G+ I+ +++ +K F + A LI+++ T+G +L G Sbjct: 439 TIGASLGADNVKQGMEASILGLGLTILFCLAFYKV-FGIFASLALIVNMILTIGLMSLIG 497 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ + I + N + Sbjct: 498 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEEIR---NGRPIQQAIHEGYNGAFSSIFDS 554 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ L + G + FA+ +A G++++ ++I ++ ++Y + Sbjct: 555 NLTTILTSLVLYGVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKK 610 >gi|301025629|ref|ZP_07189151.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 196-1] gi|299880035|gb|EFI88246.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 196-1] Length = 1049 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGPPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|326341045|gb|EGD64838.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli O157:H7 str. 1125] Length = 1029 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + K + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDKGLPAREATEKSMGEISGALVAIVLVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFDRFYRRT 519 Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592 Q R + + + L L ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 85/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDKGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V + LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIVLVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 >gi|78485674|ref|YP_391599.1| SecF protein [Thiomicrospira crunogena XCL-2] gi|78363960|gb|ABB41925.1| protein translocase subunit secF [Thiomicrospira crunogena XCL-2] Length = 338 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 168/299 (56%), Gaps = 2/299 (0%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + + FM R + +S+ F + SI LF GLN+GIDF GG + + ++P Sbjct: 1 MSTSMENQKEYNFMGHRKLAMSVSLFFIVASIIGLFVKGLNFGIDFTGGTIVELSYDKPA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 ++ +R++L+ QNF ++ L+R+ + G + AQ ++++ Sbjct: 61 EVDTIRTSLQDSGFERAVVQNFGSAEDVLIRIAPKEGVNSAQIS-NQVMEALRENHSEDF 119 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E VGP++ EL G + VI + I +LIY+ +RF++ F++G++ L+ D+ TLG Sbjct: 120 ELRRVEFVGPQVGDELTEDGALAVIYALIGVLIYVALRFEFRFSIGSVAALVHDVVITLG 179 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 F+ +F+LT +AA+L +IGYS+ND +VV+DR+R+N + S + + ++N+ L Sbjct: 180 VFSWTQAQFDLTVLAAILAVIGYSLNDTIVVFDRVRENFRTVRDG-SPETVTNLAVNQML 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ TS+ + ++ + V GG +I +FA+ + G+VV SS F+A+ I L + + Sbjct: 239 ARTLMTSLTTLLVLVALFVLGGEIIHNFALALIVGVVVGTYSSTFVASSIALALGVSKE 297 >gi|953226|gb|AAA74741.1| 1037 amino acids, 113 kDa protein [Escherichia coli] Length = 1037 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYDFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 78.2 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYDFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|168179556|ref|ZP_02614220.1| protein-export membrane protein SecF [Clostridium botulinum NCTC 2916] gi|226950491|ref|YP_002805582.1| preprotein translocase subunit SecF [Clostridium botulinum A2 str. Kyoto] gi|182669763|gb|EDT81739.1| protein-export membrane protein SecF [Clostridium botulinum NCTC 2916] gi|226841817|gb|ACO84483.1| protein-export membrane protein SecF [Clostridium botulinum A2 str. Kyoto] Length = 287 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 148/287 (51%), Gaps = 8/287 (2%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS++ + + L GLNYGIDFKGG + + + V ++ Sbjct: 7 KTKIWFSISLIIILTGMFFLIKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 ++ + N + ++ ++ VK K + + + +GP + +E Sbjct: 67 SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L RK ++ +II+ IAMLIY+ IRF++ FAL AI L+ DI T+ +A+F + + + +A Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFNFALAAILGLVHDILITVSIYAIFKLPVSSSFIA 180 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 AVLT++GYS+ND +V++DR+R+N K ++ + SI +T+ RS+ T + +++ Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANTSITQTMSRSINTVLTTLFTIV 239 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + V+ I FA P+ GI+ SSIFI++P+ + + N Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTQLGNK 285 >gi|161502368|ref|YP_001569480.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863715|gb|ABX20338.1| hypothetical protein SARI_00401 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1037 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 75/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIASQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVQLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DHLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLRKGEQHGQTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKSVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ I Sbjct: 636 RDPTTGTSFAIIERATKAFSQIKEARIFA 664 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 89/245 (36%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VQLGDVATVEMGAEKYDHLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLRK 502 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + S D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHSLLDATLHASRQRLRPILMTSLAFIFGVLPMATSNGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|330877821|gb|EGH11970.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1044 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 69/687 (10%), Positives = 182/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------AIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKTAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLLGTFGILAGFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ K+ F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ I+ I + + D G+ + Sbjct: 520 FDRSVVSYERGVGNMLKHKWLSYLGYIVIFAGMIFMFMRIPAAFLPDEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ L + ++ Sbjct: 640 ENSVFKLAARAQGYFFSLRDAMVFAIV 666 Score = 74.3 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I+ + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESIKGVVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAGFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 Score = 68.2 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + A V S S + +S N + L Sbjct: 778 RMTPEDLKKWYVRNSAGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEILGTPAPGYSSGD 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + KK I T + E + + S + + + + ++ Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + I + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S D ++ L + TSMA + V+P+A+ G S + G+ Sbjct: 950 -LHEQGKSLTDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + I + Sbjct: 1009 ITAVVLAIFWVPLFFVSISGLFKSKQK 1035 >gi|330504947|ref|YP_004381816.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas mendocina NK-01] gi|328919233|gb|AEB60064.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas mendocina NK-01] Length = 1047 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 71/695 (10%), Positives = 183/695 (26%), Gaps = 55/695 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + ++++PS P + ++V Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----KLPINQYPSIAPPA-------------VSIQVSY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + + L + S +I ++F + +V Sbjct: 50 PGASAQTVQDTVVQVIEQQLNGIDGLRYVSSASNSDGSMEIVVTFEQGVNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + T + +++ + S I+ D I + Sbjct: 110 KLQLATPLLPQEVQQQGIRVTKSVKNFLMVIGVVSKDGSMTREDLSDYIVSNLQDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + N FG + Sbjct: 170 KGVGDFQVFGAQ-YAMRIWLDPAKLNSFQLTPVDVRSAIQAQNVQISSGQFGGLPASPGN 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + K + + + + + + Sbjct: 229 QLNATIIGKTRL-------------QTPEEFRKILLKVQADGSQVRLGDIAKVELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T + A L + Sbjct: 276 AINAQFNGLPASGLAIRLATGANALDTAKAVRETIANLEPFFPAGMEVVFPYDTTPVISA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + ++ ++ + ++ T +L+ G ++ ++ Sbjct: 336 SIEGVVHTLFEAIVLVFLVMFLFLQNLRATIIPTMAVPVVLLGTFGVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMREEGLSPKEATKKSMGQIQGALVGIALVLSAVFLP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++ +S+ A+ A+ + + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMSLSVLVALVFTPALCATLLKPIDSDHHEAKRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R + + ++ +I + + +G + V Sbjct: 516 NRTFERGSIAYQRGVAGMIKRKAPYLILYLVIVAIMAWMFTRIPTAFLPEEDQGVLFAQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + ++ + D + + + M + Sbjct: 576 QTPSGSSAERTQVVVDE----MREYLLNDEASTVKSVFTVTGFNFAGRGQSSGMAFIMLK 631 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 +N + ++ ++ + Sbjct: 632 PWGERPGEENGVAALAQRAQMHFFSFRDAMVFAFA 666 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 84/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L + + I+ Q + L +++ + + + Sbjct: 258 SQVRLGDIAKVELGGENYAINAQFNGLPASGLAIRLATGANALDTAKAVRETIANLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + +++ + + + + + Sbjct: 318 PAGMEVVFPYDTTPVISASIEGVVHTLFEAIVLVFLVMFLFLQNLRATIIPTMAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + A++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFGVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMREEGLSPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ LPMA +GGS F+I + + ++ ++ + Sbjct: 436 GQIQGALVGIALVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMSLSVLVALVFTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 8/201 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWYFA 693 + + L G L + + + + + L + W Sbjct: 837 DAMAAVEEIASQLPQGVGYSWTGLSYEERLAGSQTLALFVISAIVVFLCLAALYESWSIP 896 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L I L F L G+ ++ +LT IG S + +++ + + Y Sbjct: 897 FSVMLVVPLGIIGALLFTELRGLSNDVFFKVGLLTTIGLSARNAILIVEFAK---AQYEQ 953 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810 ++F + ++ L + TS+A + LP+A+ G + + G++ A Sbjct: 954 GMTFAEAAIEACRMRLRPIIMTSLAFILGCLPLAIASGAGAGSKHAIGTGVIGGMLSAMV 1013 Query: 811 SSIFIAAPILLFIYDWRAKNA 831 +IF + + K Sbjct: 1014 LAIFWIPLFYVVVCSIFEKKR 1034 >gi|146312606|ref|YP_001177680.1| aminoglycoside/multidrug efflux system [Enterobacter sp. 638] gi|145319482|gb|ABP61629.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Enterobacter sp. 638] Length = 1037 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 78/689 (11%), Positives = 179/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L L ++++P P ++ + + Sbjct: 8 RPIFAWVLAIILCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLSFTAGSDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + S + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDSNILTIAFVSTDGSMDKQDISDYVASNIQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L + T ++ N G D+ Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSVQMTATDVTNAIKSQNAQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINSQSLL-------------QTPQQFRDITLRVNPDGSEVRLGDVAKVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + + T + L V Sbjct: 276 DNLSRFNGNQASGLGVKLASGANEMATAKLVIDRLDELAPYFPHGLEYKVAFETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPRDATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCSTLLKPLHKGEQHGQKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NRMFNRNAARYEAGVANILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFITSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ ++ + + + F G+ R+ +K Sbjct: 576 QLPSGATQQQTLKVVQKVEQYFFTHEKDNIVSVFSTVGSGPGGNGQNVARMFVRLKGWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K + + Sbjct: 636 RDSKTGSSFAIIERATKAFTRIKEARVFA 664 Score = 80.1 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 86/235 (36%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + L + +A +++ ++ P Sbjct: 260 VRLGDVAKVEMGAEKYDNLSRFNGNQASGLGVKLASGANEMATAKLVIDRLDELAPYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAFETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + +S RD KS+ + Sbjct: 380 FAVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPRDATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 33/269 (12%), Positives = 83/269 (30%), Gaps = 13/269 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 D + A V S ++ + N + Sbjct: 776 PYRMLPDDINLWYVRNNAGGMVPFSAFATSHWESGSPRLERYNGYSALEIVGEAAPGVST 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + ++V++ T + + + + S + + + + Sbjct: 836 GTAMDTMEKLVQQLPAGFGLEWTAMSYQERLSGAQAP----ALYAL--SLLVVFLCLAAL 889 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W + + L + L + G+E ++ +LT+IG S + +++ + + Sbjct: 890 YESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE 949 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803 + + + + L + TS+A VLPMA G+ + + Sbjct: 950 ---MNSKGHDLLSSTLHACRQRLRPILMTSLAFVFGVLPMATSSGAGSSSQHAVGTGVMG 1006 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G++ A +I+ + + R Sbjct: 1007 GMISATVLAIYFVPLFFVLVRRRFPLKER 1035 >gi|294012029|ref|YP_003545489.1| hydrophobic/amphiphilic exporter-1 [Sphingobium japonicum UT26S] gi|292675359|dbj|BAI96877.1| hydrophobic/amphiphilic exporter-1 [Sphingobium japonicum UT26S] Length = 1057 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 77/575 (13%), Positives = 152/575 (26%), Gaps = 41/575 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + +FP P + + Sbjct: 8 RPIFAWVIAIVIMLAGALA-----LRSLSVAQFPEIAPPA-------------VTVSTSY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117 L+ + + LK + + ITL+F +V Sbjct: 50 PGANAQTLESTTTQVIEQQLKGLDHLRYFSSSSDSAGNLTITLTFEQGTDPNIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ L T +++ D I ++ I D I Sbjct: 110 KLAQATPLLPQEVQQQGLRVTKSTATFLMVMAVYSDDGIHDQLDAGDFIASSLQDPISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP ++ L T + N G Sbjct: 170 DGVGDTQLFGSQ-YAMRIWLDPYKMANLGITAGDVKSAIRAQNAQVSAGQIGGAPSPRGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 AMNATVTAQSRL-------------KTPEEFRQIRLRSNGNGSVVYLSDVAKVELGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T+E L N Sbjct: 276 SFRSRFNGHPAAGFAIKLAPGANALDTVEGVKSRVKELSKTFPAWVRYDFPVDNSTFVKL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + L+ ++ + ++ +LA+L G T+ ++ Sbjct: 336 SVEQVIHTLFEAILLVFVVMFLFLQNWRATLIPTIAVPVVLLGSLAILYAAGFTINTLTL 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERIIQEEGLSPREAARKSMDEISGALVGIGLVLSAVFLP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + A+ I+R K + PL F Sbjct: 456 MAFFGGSTGVIFRQFSITIVSAMVLSVLIALILTPALCATILRPKGQSHVWTGPLGSRFG 515 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 + G ++ Sbjct: 516 RFFDWFNRTFDRNVARYGATVEKVERHWGRTMLVY 550 Score = 81.7 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 87/235 (37%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V LS V + + +++ ++ K++++ P Sbjct: 260 VYLSDVAKVELGAENYSFRSRFNGHPAAGFAIKLAPGANALDTVEGVKSRVKELSKTFPA 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + + + I + + + + + +++ + W L + + + + Sbjct: 320 WVRYDFPVDNSTFVKLSVEQVIHTLFEAILLVFVVMFLFLQNWRATLIPTIAVPVVLLGS 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 L G N + ++ IG V+D +VV + + + +S R+ KS++E Sbjct: 380 LAILYAAGFTINTLTLFGMVLAIGLLVDDAIVVVENV--ERIIQEEGLSPREAARKSMDE 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V + LPMA +GGS F+I + +V++ ++ + + Sbjct: 438 ISGALVGIGLVLSAVFLPMAFFGGSTGVIFRQFSITIVSAMVLSVLIALILTPAL 492 Score = 51.2 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 61/214 (28%), Gaps = 6/214 (2%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 L V + + G + F+G + + PG S + Sbjct: 785 TTPDSIGVLHVRGSSGAMAPISSFATTEWTRGPAKLERFNGVPSMQIMGAPAPGVSTGEA 844 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + + ++I + + + W Sbjct: 845 MKAMEEIAAKLPAGVGYEWNGISYEEQTSGGQAPALYALSMLIVFLCLA---ALYESWSV 901 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 + + + L + + L G+ ++ ++T IG S + +++ + + M+ Sbjct: 902 PIAVMLVVPLGVFGAVLAAMLVGLNNDIYLQVGLITTIGVSAKNAILIVEFAEEKMRE-- 959 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 + ++ L + TS A VLP+ Sbjct: 960 -GLPPARAALEAGKLRLRPILMTSFAFVFGVLPL 992 >gi|168817768|ref|ZP_02829768.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344686|gb|EDZ31450.1| acriflavine resistance protein D [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 1037 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|167993983|ref|ZP_02575076.1| AcrB protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328081|gb|EDZ14845.1| AcrB protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|267995602|gb|ACY90487.1| multidrug transport protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|332990249|gb|AEF09232.1| multidrug transport protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 1037 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 74/684 (10%), Positives = 187/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSNSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T + A L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ S + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529 FGG R F+IT+ ++ +S+ A+ + A+ + KK Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518 Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + R + + ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 97/269 (36%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680 + G + T VK + ++ ++ I + + + + I + Sbjct: 292 KLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++S R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|329296806|ref|ZP_08254142.1| multidrug efflux system protein AcrB [Plautia stali symbiont] Length = 1049 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 65/574 (11%), Positives = 155/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I G L + + ++++P+ P + ++ Sbjct: 8 RPIFAWVLAIIIMLAGALSII-----KLPIEQYPNVAPPA-------------VEIQASY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L + + + + S +TL+F + +V Sbjct: 50 PGADAKTLQDSVTQVIEQNMNGIDRLMYMSSSSDSSGTLTLTLTFQSGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++L+ + + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGIQVKKSSSSFLMLAGFVSEDGSMTQNDISDYVASNIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + N G Sbjct: 170 PGVGDTQVFGAQ-YAMRIWLDPHKLNNYQLTPVDVISALQTQNTQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGNIMLKVNQDGSQVRLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T + L+ + Sbjct: 276 ESIVRYNGKPASGIGVKLATGANALDTADAVKAELTKLKPFFPAGMKTVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A++S G ++ ++ Sbjct: 336 SIFEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +K I + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPIKKGEHGKTTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F ++ V + L + Sbjct: 511 FFGWFNRLFDKSTNHYVDSVGHIVRSTGRYLLIY 544 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 80/227 (35%), Gaps = 8/227 (3%) Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665 + + G L + A L +K + +T E+ Sbjct: 281 YNGKPASGIGVKLATGANALDTADAVKAELTKLKPFFPAGMKTVYPYDTTPFVKISIFEV 340 Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 ++ +++ + M +++ + L + + + T + FG N + Sbjct: 341 VKTLFEAIVLVFLVMYLFLQ---NFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFG 397 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 ++ IG V+D +VV + + + + ++ +S+ + G V ++ +P Sbjct: 398 MVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIP 455 Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 MA +GGS F+I + + ++ ++ + + + K Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCATMLKPIKK 502 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 + + + L + G L + IS I + + + ++ W Sbjct: 838 DAMNLMESLASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L F L G+ ++ V +LT IG S + +++ + + M+ Sbjct: 898 FAVMLVVPLGVIGALLFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + VLP+A+ G + + G+V A + Sbjct: 958 G--LVESTLEASRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTGVMGGMVTATA 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|238913618|ref|ZP_04657455.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 1037 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|261248554|emb|CBG26392.1| acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 1037 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 75/684 (10%), Positives = 187/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + N ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGNVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T + A L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ S + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529 FGG R F+IT+ ++ +S+ A+ + A+ + KK Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518 Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + R + + ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 97/269 (36%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680 + G + T VK + ++ ++ I + + + + I + Sbjct: 292 KLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++S R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|170767931|ref|ZP_02902384.1| acriflavine resistance protein B [Escherichia albertii TW07627] gi|170123419|gb|EDS92350.1| acriflavine resistance protein B [Escherichia albertii TW07627] Length = 1049 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 70/686 (10%), Positives = 176/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + +P+ L + T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMNPNELNKYQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + R I Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T A + + S Sbjct: 280 EFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + I+ + + + +G V Sbjct: 520 FDKSTHHYTDSVGGILRSTGRYLALYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLNEVTDYYLTKEKKNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 640 DENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAANGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMALMEELASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|89902624|ref|YP_525095.1| preprotein translocase subunit SecF [Rhodoferax ferrireducens T118] gi|89347361|gb|ABD71564.1| protein translocase subunit secF [Rhodoferax ferrireducens T118] Length = 317 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 98/302 (32%), Positives = 168/302 (55%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR +S++ + ++ LF+ GL+ ++F GG + V +P D Sbjct: 1 MEFFKIKRDIPFMRHAIIFNVVSLVTFLAAVFFLFSRGLHLSVEFTGGTLMEVTYTQPAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L++VRS + L + D+ QNF ++ L+RL Q G + AQ V V + + Sbjct: 61 LNLVRSTVAKLGLNDVQVQNFGTARDVLIRLPVQKGVTSAQQSVQ--VMAALKAADASAV 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL G+ + + +++Y+ IRF+W FA+ AI + D+ LGF Sbjct: 119 MRRTEFVGPQVGDELAADGLKALASVVVGIMLYLSIRFEWKFAVAAIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AAVL ++GYSVN+ VV++DR+R+N + Y ++ +ID +I T+ Sbjct: 179 FAFFQWEFSLPVLAAVLAVLGYSVNESVVIFDRIRENFRRYRK-MNTMQIIDSAITSTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M ++GG+ + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHGSTQMMVLSMLLFGGATLHYFALALTIGILFGIYSSVFVAAAIAMWLGIQREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|254262186|emb|CAZ90514.1| Probable aminoglycoside efflux pump acrD [Enterobacter turicensis] Length = 1038 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 79/689 (11%), Positives = 179/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G + ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLGGSMAIF-----SLPVEQYPDLAPP-------------NVRISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSSTGQMTVTLSFEAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGRMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D+ Sbjct: 170 SGVGDIDAYGSQYSM-RIWLDPNKLNSYQLTTQDVTDAISSQNAQIAVGQLGGTPSVDTQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPAQFRDITLRVNQDGSVVTLGDVAQVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L A V Sbjct: 276 DYLSRYNGKAASGLGVKLASGANEMATADAVLKRLDELSAYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A L G ++ ++ Sbjct: 336 SITDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFATLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLHKGEQHGQKGFFGAF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L + +G V Sbjct: 516 NRVFNRSAARYERGVANILHRSLRWVVIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ L+ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVQQLEAYYFTHEKENVASLFATIGSGPGGNGQNVARMFVRLKDWDD 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ + Sbjct: 636 RDPHTGTSFAIIERATKAFSKINEARVFA 664 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + L + +A + +++ P Sbjct: 260 VTLGDVAQVEMGAEKYDYLSRYNGKAASGLGVKLASGANEMATADAVLKRLDELSAYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FATLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 8/187 (4%) Query: 651 IQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708 E L + +S + + + + ++ W + + L + L Sbjct: 852 NFGLEWTAMSYQERLSGSQAPALYALSLLVVFLCLAALYESWSVPFSVMLVVPLGVIGAL 911 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + G+E ++ +LT+IG S + +++ + + + Sbjct: 912 LATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFAND---ANARGQELVSATLDACRQR 968 Query: 769 LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 L + TS+A VLPMA G + + G++ A +IF + + Sbjct: 969 LRPILMTSLAFVFGVLPMATSSGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRR 1028 Query: 826 WRAKNAR 832 R Sbjct: 1029 RFPLKER 1035 >gi|48927349|emb|CAG34250.1| RND protein [Stenotrophomonas maltophilia] Length = 1040 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 79/702 (11%), Positives = 188/702 (26%), Gaps = 42/702 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + +P+ P Sbjct: 8 RPIFAWVIAIIIMLAGGLALF-----KLPVSMYPNVAPPAVE---------ISATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 V + ++ L + ITL+F + +V LQ Sbjct: 54 AKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + + + + A + + + +D++ Sbjct: 114 AMPLLPQEVQRQGINVAKSSSGFLNVIAFVSENGSMDANDIADYVGSNVVDRLSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L + A+++ N G Sbjct: 174 NIQVFG-GKYAMRIWLDPNKLHTYGLSVAEVTAAIKAQNAQVAIGQLGGAPSIKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I + Sbjct: 233 TINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESYDFVT 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T +++ + S Sbjct: 280 RYNGQPASGLAVTLATGANALDTAAGVDAALQDMKSFFPAGLKAEIPYDTTPFVRVSIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L++LG ++ + ++ +V Sbjct: 340 VVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAMLGFSVNMLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + V + F Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G R F+ T+ ++ +S+ AI + A+ +++ K + + Sbjct: 460 SGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLKKGEHHVAHKGWSGRFFNG 519 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 F R S + ++ GI + +GVL R + + Sbjct: 520 FNRGFDR-------TSESYQRGVRGIIHRPWRFMGIVAALFVLMGVLFVRLPSSFLPNED 572 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTIQNTE 655 L + E+ + + ++ V + Sbjct: 573 QGVLMALVQAPVGATQERTLESIAALENHFLQNEKDAVDSVFSVQGFSFAGMGQNAGMAF 632 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 + S G++ + A+A L I F + F AI Sbjct: 633 VKLKDWSERDANNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 6/241 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + D + + L +++ ++ + + P Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVDAALQDMKSFFPAGLKA 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 R I+ + +I + + + + +++ + + L + + + T G Sbjct: 324 EIPYDTTPFVRVSIKGVVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A+ G N+ + A++ IG V+D +VV + + + +S + KS+ + G Sbjct: 384 AMLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V + +PMA GS F+ + + ++ +I + + + Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501 Query: 829 K 829 K Sbjct: 502 K 502 Score = 64.7 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 31/247 (12%), Positives = 78/247 (31%), Gaps = 13/247 (5%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + + V S + + N Sbjct: 779 QPFRMVPEDFDLWSVKNDKGEMVPFSAFATKHWDYGSPRLERYNGVSAMEIQGEPAPGVA 838 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 A + ++ K+ T + + L+ +S + + + + Sbjct: 839 SGDAMAEIEQLAKQLPAGFGIEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAA 892 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 ++ W + L I + G+E ++ A+LT +G + + +++ + + Sbjct: 893 MYESWSVPTAVLLAAPLGILGAVLANTFKGLERDIYFQVAMLTTVGLTSKNAILIVEFAK 952 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802 +N+ S + I ++ + L V TS+A + V+P+A+ G + + Sbjct: 953 ENL---EKGASLIESIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVL 1009 Query: 803 FGIVVAA 809 G++V Sbjct: 1010 GGMIVGT 1016 >gi|240171978|ref|ZP_04750637.1| preprotein translocase subunit SecF [Mycobacterium kansasii ATCC 12478] Length = 436 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 67/294 (22%), Positives = 133/294 (45%), Gaps = 11/294 (3%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 R GIS +I + G +GIDFKGG + V ++L Sbjct: 56 GRRKLWYGISGGIVTIAILSIIVRGFTFGIDFKGGTTVSFPRGDVKVTEVEEVFHKTLGS 115 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659 S + V+++ + + ++ + + P + V Sbjct: 116 DPESVVTVGNGASATVQIRSKTLSNAQTEKLRDALFDAFHPKGADGKPSKKAISDAAVSE 175 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ +K ++ +++ + + IYI +R++ Y + AI ++ D+T T G +AL G E Sbjct: 176 TWGGQITKKAVIALVVFLVLVAIYITVRYERYMTISAIAAMVFDLTVTAGVYALVGFEVT 235 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777 V +LT++G+S+ D V+V+D++ +N +TT +F + + ++N+T RS+ TS+ Sbjct: 236 PATVIGLLTILGFSIYDTVIVFDKVEENTNGFQHTTRRTFAEQANLAVNQTFMRSINTSL 295 Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + + V+ + + G + A+ GI+V SSIF A P+L+ + + Sbjct: 296 ISVLPVVALMVVAVWLLGVGTLKDLALVQLIGIIVGTYSSIFFATPLLVTLRER 349 >gi|240015937|ref|ZP_04722477.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae FA6140] gi|240125123|ref|ZP_04738009.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae SK-92-679] gi|268683721|ref|ZP_06150583.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae SK-92-679] gi|268624005|gb|EEZ56405.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae SK-92-679] Length = 311 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVARGLNFSVEFTGGTVMEVQYQQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L++GD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKMRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + I ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVNNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRNPAMRGHTVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298 Query: 830 NAR 832 A+ Sbjct: 299 IAK 301 >gi|146329873|ref|YP_001208975.1| preprotein translocase, SecF subunit [Dichelobacter nodosus VCS1703A] gi|146233343|gb|ABQ14321.1| preprotein translocase, SecF subunit [Dichelobacter nodosus VCS1703A] Length = 306 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 84/292 (28%), Positives = 152/292 (52%), Gaps = 4/292 (1%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 + I +M + +S + ++ + L+ G N+G+DF GG + + D+ Sbjct: 1 MQIKIPYIHYMNYARHALILSGILTVLCLLLMIFRGFNFGLDFTGGATIELQYTEAADIP 60 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 VR + + Q V++++ + +++ V I P I Sbjct: 61 DVRKTVNQILPEATVLQYGSARD---VQIRFADDGRGSIDNLMQEVVTTIKARYPDVKIN 117 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 +G + ELI KGI +++S + ++IY+ +RF+ FA+GA+ + + D+ T F+ Sbjct: 118 GQSKIGGQYKSELIEKGITALVLSCVGLVIYLAVRFEMKFAIGAVLSQLHDVIATAAMFS 177 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L G +LT +AA+L ++GYSVND VVVYDR+R+N + +++ID SIN+T+ R+ Sbjct: 178 LAGWTMDLTVLAALLAVLGYSVNDTVVVYDRIRENFLKTPHK-TAKEVIDASINQTMART 236 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + T + ++V+ + +GGS + F+ M GIV + SSIF+A+ I L + Sbjct: 237 IVTGLTTALAVISLLFFGGSTLFGFSAAMLVGIVFGSYSSIFVASAIALKLG 288 Score = 44.3 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 4/162 (2%) Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTL 414 S+ I KG A+V V +V+++ V + K+ + A S +VI T A+ SL G T+ L Sbjct: 126 YKSELIEKGITALVLSCVGLVIYLAVRFEMKFAIGAVLSQLHDVIATAAMFSLAGWTMDL 185 Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAY-STIFDSNITAL 471 +A ++ +G +V+ ++V +RIRE +++ +D ++ TI TAL Sbjct: 186 TVLAALLAVLGYSVNDTVVVYDRIRENFLKTPHKTAKEVIDASINQTMARTIVTGLTTAL 245 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513 +LFF G A + + S + + Sbjct: 246 AVISLLFFGGSTLFGFSAAMLVGIVFGSYSSIFVASAIALKL 287 >gi|261494987|ref|ZP_05991456.1| preprotein translocase subunit SecD [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309396|gb|EEY10630.1| preprotein translocase subunit SecD [Mannheimia haemolytica serotype A2 str. OVINE] Length = 602 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 165/523 (31%), Positives = 282/523 (53%), Gaps = 40/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + GLDL GG ++EVD + + D LRS +KE + Sbjct: 93 NLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKL 152 Query: 87 GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N T + FAD+ E V L + + ++++ Sbjct: 153 QYQAVKKGENFATEVEFADNDTTEKAVRLVRR------------SHPTLDILVNDNKVTL 200 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 S + + + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L Sbjct: 201 TPSAQALSESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 260 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V + G+ DG ++ K + G H+ AT+ Sbjct: 261 LGATATLEFRLVNTEANVASAAKGIVPADSELQNTRDGEPVVLRRKPSLGGEHIIDATSG 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD------------------GRV 302 D + V I D G E+T+ I KP+A + + Sbjct: 321 TDERGLPQ-VSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQE 379 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + Q + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 380 VINVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK 439 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A + GL L +LF + Y +G+ A ++ +N+ILT+ L+SL+GATLT+P IAGIVL Sbjct: 440 QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVL 499 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G++VD+N+L+ ERI+EE R + + ++ G++ A+S+IFDSN+T ++ ++VL+ G Sbjct: 500 AVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGT 559 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ L ++ISMFTAI+ R ++ ++ K++K + I Sbjct: 560 GPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI 602 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 83/176 (47%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + +++G+ I+ +++ +K F + A LI+++ T+G +L G Sbjct: 428 TIGASLGADNVKQGMEASILGLGLTILFCLAFYKV-FGIFASLALIVNMILTIGLMSLIG 486 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G SV+ V++Y+R+++ ++ + I + N + Sbjct: 487 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEEIR---NGRPIQQAIHEGYNGAFSSIFDS 543 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ L + G + FA+ +A G++++ ++I ++ ++Y + Sbjct: 544 NLTTILTSLVLYGVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKK 599 >gi|33601507|ref|NP_889067.1| acriflavine resistance protein B [Bordetella bronchiseptica RB50] gi|33575943|emb|CAE33022.1| acriflavine resistance protein B [Bordetella bronchiseptica RB50] Length = 1059 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 74/693 (10%), Positives = 184/693 (26%), Gaps = 43/693 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L L + ++P+ P ++ Sbjct: 8 RPVFAWVIAIVLMMAGALSIL-----SLPVAQYPNIAPPAI---------SINVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + ITL+F+ + +V L Sbjct: 54 AQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAV 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L ++ ++ + T + ++++ + + + D I + Sbjct: 114 AQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQDPISRTPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + P +L T + ++ N G + Sbjct: 174 DFQLFGAP-YAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + +I Sbjct: 233 TVIGPSRL-------------QTPEAFGRILLKVNSDGSQVRLKDVASIELGAQTYAIDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T + L+ P + S Sbjct: 280 YYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + S+ + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMSQITGALIGIAMVLAAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ S+++S+ AI A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGWFNRTF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + +A R + + ++ + + + +G + V A Sbjct: 520 ERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQAPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ +++ + + F V G + ++ Sbjct: 580 GATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 R +R V M Sbjct: 640 EHRAAAVAARANAKFRAELRDAQAAVFAPPAVM 672 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 85/268 (31%), Gaps = 16/268 (5%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + A V S S + ++ N N + Sbjct: 779 RMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGD 838 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A + + K I T + E + + S I + + + ++ Sbjct: 839 AMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAP----ALYAI--SLIVVFLCLAALYE 892 Query: 690 WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +++ L++ + A G+ ++ +LT IG + + +++ + ++ Sbjct: 893 -SWSIPTAVMLVVPLGVVGALLATLTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKE- 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 Y S + + + L + TS+A + V+P+A+ G + + G Sbjct: 951 --HYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGG 1008 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ +IF P+ + K R Sbjct: 1009 MLTGTFLAIFFV-PLFFVLTLRLFKVKR 1035 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 81/237 (34%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V S Q I + L +++ + + + Sbjct: 258 SQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P I + + + + + + +++ + L + + + Sbjct: 318 PPGMDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S R KS+ Sbjct: 378 GTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPRQATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G + +M +PMA +GGS F+I + +V++ +I + Sbjct: 436 SQITGALIGIAMVLAAVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPAL 492 >gi|333008152|gb|EGK27627.1| inner membrane protein [Shigella flexneri VA-6] Length = 1049 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 58.9 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E ++ L T + G L + +S I + + + ++ W Sbjct: 839 EAMELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAVSLIVVFLCLAALYESWSTP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|254429775|ref|ZP_05043482.1| RND transporter, HAE1 family [Alcanivorax sp. DG881] gi|196195944|gb|EDX90903.1| RND transporter, HAE1 family [Alcanivorax sp. DG881] Length = 1041 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 69/689 (10%), Positives = 187/689 (27%), Gaps = 50/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L ++++P+ P + + + Sbjct: 8 RPIFAWVIAIIMMMAGALAI-----YTLPIEQYPTVAPP-------------QVSIAGNY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S + L+FA + +V Sbjct: 50 PGASAKTVEDSVTQVIEQQMNGIDNLLYMSSSSDSFGNAAVNLTFAPGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + T + ++++ + + + I D + Sbjct: 110 KLQLATPLLPQEVQQQGMQVTKSSDSFLMVAAFTSEDGSLSRADLADYIASNVQDPVSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q + DP++L + T ++ + NN G + Sbjct: 170 PGVGQIQLFGSP-YAMRIWLDPNKLNKFDLTPQDITQTIQVQNNQVASGQLGGAPAVEGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + + F + Sbjct: 229 QLNATIIAQTRLEDVD-------------QFKNILLKVNPDGSQVFLKDVARVELAAQNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T E A L + Sbjct: 276 DVQGRYNGQPAAGLAINLATGANALDTAEALRARLAELEPYFPDKMEMVFPYDTTPFVSI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIEEVVHTLFEAIILVFLVMYLFLQNFRATLIPTLAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMHEEGLPPKEATRKSMGQITGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524 + FF G R F+IT+ ++++S+ A+ + A+ + + + Sbjct: 456 MAFFPGSTGAIYRQFSITIVSAMVLSVLVAMILTPALCATMLKAKDSEHQTDHGFFGWFN 515 Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + R + I+ + + + +G + V Sbjct: 516 RTFDRGTRRYQGSVEKILGRRGRYLFIYVIIVGVLGFSFMRLPSSFLPEEDQGILFTLVT 575 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 L+ ++ ++ ++ + F V G +K Sbjct: 576 LPAGSTQEQTVDVLKKMEDYYLNEESSAVDGLFTVAGFSFTGQGQNAGMAFVNLKDWSER 635 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGV 673 + + N + + + Sbjct: 636 DLSVDGANNVVGRAMGYFSTIREAMMFAL 664 Score = 80.1 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 43/320 (13%), Positives = 102/320 (31%), Gaps = 8/320 (2%) Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563 + M + K+ D+ P I G ++ + + Sbjct: 177 LFGSPYAMRIWLDPNKLNKFDLTPQDITQTIQVQNNQVASG--QLGGAPAVEGQQLNATI 234 Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 + L FK + V L V + Q D+ + L Sbjct: 235 IAQTRLEDVDQFKNILLKVNPDGSQVFLKDVARVELAAQNYDVQGRYNGQPAAGLAINLA 294 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683 +++ L ++ P I + + + + I + + Sbjct: 295 TGANALDTAEALRARLAELEPYFPDKMEMVFPYDTTPFVSISIEEVVHTLFEAIILVFLV 354 Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 +++ + + L + + + T A FG N + ++ IG V+D +VV + Sbjct: 355 MYLFLQNFRATLIPTLAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAI 799 + ++ + ++ KS+ + G V ++ +PMA + GS F+I Sbjct: 415 NV--ERVMHEEGLPPKEATRKSMGQITGALVGIALVLSAVFIPMAFFPGSTGAIYRQFSI 472 Query: 800 PMAFGIVVAASSSIFIAAPI 819 + +V++ ++ + + Sbjct: 473 TIVSAMVLSVLVAMILTPAL 492 Score = 65.1 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 29/248 (11%), Positives = 72/248 (29%), Gaps = 13/248 (5%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V N+ + G + ++G + ++ PG S Sbjct: 788 VRNNQGEMVPFSTFATGHWTYGSPKLERYNGVSSVNIQGNAAPGYSTGDAMDAMEELSAK 847 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + I+ +++ + + + W L++ Sbjct: 848 LPAGFGFEWTGMSYQERQSGDQAPALYIISLLVVFLCLA---ALYESWSIPFA--VMLVV 902 Query: 703 DITKTLGFFALFGIEFNLTAVA--AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + A + N +LT IG S + +++ + + L Sbjct: 903 PLGILGAVLAATFRDLNNDVFFQVGLLTTIGLSAKNAILIAEFALE---LEQKGEHLLKA 959 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817 +++ L + TS+A + V P+ + G + + G++ A +IF Sbjct: 960 TLEAVRMRLRPILMTSLAFMLGVTPLMISTGAGAGARNAIGTGVFGGMLTATVLAIFFIP 1019 Query: 818 PILLFIYD 825 + + Sbjct: 1020 LFYVAVRK 1027 >gi|118589131|ref|ZP_01546538.1| probable protein-export membrane protein [Stappia aggregata IAM 12614] gi|118438460|gb|EAV45094.1| probable protein-export membrane protein [Stappia aggregata IAM 12614] Length = 316 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 125/297 (42%), Positives = 185/297 (62%), Gaps = 3/297 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 ++PD I+FM R +SI+ I SI FT GLNYGIDFKGG + + + P D+ Sbjct: 4 RIVPDNTKIKFMWLRKVSFPLSIVLVIASITAFFTVGLNYGIDFKGGTIIEIKTDGPADV 63 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + +RS+L SL +GD+ Q F G + L+R++ QPG +AQ V+ V+ Sbjct: 64 ASIRSDLSSLNLGDVQVQEFGGSDDILIRVEEQPGGELAQQAVVGKVRTIFE--GQEVDF 121 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + E+VGP++S EL + G + V S +A+L YIW RF+W FA+GAI T D+ T+G F Sbjct: 122 RRVEVVGPRVSGELAQAGAIAVAASLLAILFYIWFRFEWQFAVGAILTTANDVVITIGLF 181 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 L ++F+L+++AAVLT+IGYS+ND VVVYDR+R+N++ Y +++D SINETL R Sbjct: 182 VLLQLDFSLSSIAAVLTIIGYSLNDTVVVYDRIRENLRKYKKR-PLTEVLDMSINETLSR 240 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + TS+ +++ + ++GG VI SF + M FGIV+ SSIF+AAP L+ Sbjct: 241 TTMTSLTTLLALFALYIFGGEVIQSFTLAMIFGIVIGTYSSIFLAAPFLILFNLRAE 297 >gi|16766686|ref|NP_462301.1| multidrug transport protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197263078|ref|ZP_03163152.1| AcrB protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16421952|gb|AAL22260.1| RND family multidrug transport protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241333|gb|EDY23953.1| AcrB protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|301159940|emb|CBW19459.1| acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914419|dbj|BAJ38393.1| multidrug transport protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225186|gb|EFX50245.1| RND efflux system, inner membrane transporter CmeB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131754|gb|ADX19184.1| multidrug transport protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 1037 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 74/684 (10%), Positives = 187/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T + A L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ S + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529 FGG R F+IT+ ++ +S+ A+ + A+ + KK Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518 Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + R + + ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 97/269 (36%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680 + G + T VK + ++ ++ I + + + + I + Sbjct: 292 KLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++S R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|307139103|ref|ZP_07498459.1| aminoglycoside/multidrug efflux system [Escherichia coli H736] gi|331643084|ref|ZP_08344219.1| aminoglycoside/multidrug efflux system [Escherichia coli H736] gi|315615712|gb|EFU96344.1| inner membrane protein [Escherichia coli 3431] gi|331039882|gb|EGI12102.1| aminoglycoside/multidrug efflux system [Escherichia coli H736] Length = 1037 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEHNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|319896575|ref|YP_004134768.1| protein-export membrane protein secd [Haemophilus influenzae F3031] gi|317432077|emb|CBY80427.1| protein-export membrane protein SecD [Haemophilus influenzae F3031] Length = 616 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 147/516 (28%), Positives = 269/516 (52%), Gaps = 36/516 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + S N + GLDLRGG ++EVD + + + D LR L+KE I +++ Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169 Query: 93 QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + ++ A+ + + + I++ LS Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278 Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V N + D G+ + + + G H+ +++ D + Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 P V ++ D G + T+ KP+A + Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q QI+G +I A + +L++G+L + IVEER +G LG+ ++ +G A Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNFSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GLV ++ FM+ Y +G++A F++ +N++L + L+S+L ATL++P IAGIVL +G++ Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ ERI+EE R +S+ +++ G++ A+++IFD+N+T ++ ++L+ G G ++G Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNSAFTSIFDANLTTILTAIILYAVGTGPIQG 578 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 FAIT+ L + ISMFTAI+ RA++ + K++K + Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +GI + +A++ ++ +K F + A L+++I +G ++ Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G SV+ V++++R+++ ++ S + I++ N Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNSAFTSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G I FAI ++ G+ ++ ++I ++ +Y + Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613 >gi|33592135|ref|NP_879779.1| acriflavine resistance protein B [Bordetella pertussis Tohama I] gi|33571779|emb|CAE41286.1| acriflavine resistance protein B [Bordetella pertussis Tohama I] gi|332381551|gb|AEE66398.1| acriflavine resistance protein B [Bordetella pertussis CS] Length = 1059 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 73/693 (10%), Positives = 183/693 (26%), Gaps = 43/693 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L L + ++P+ P ++ Sbjct: 8 RPVFAWVIAIVLMMAGALSIL-----SLPVAQYPNIAPPAI---------SINVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + ITL+F+ + +V L Sbjct: 54 AQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAV 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L ++ ++ + T + ++++ + + + D I + Sbjct: 114 AQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQDPISRTPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + P +L T + ++ N G + Sbjct: 174 NFQLFGAP-YAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + +I Sbjct: 233 TVIGPSRL-------------QTPEAFGRILLKVNRDGSQVRLKDVASIELGAQTYAIDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T + L+ P + S Sbjct: 280 YYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMGQITGALIGIAMVLAAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ S+++S+ AI A+ + + + Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGWFNRTF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + +A R + + ++ + + + +G + V A Sbjct: 520 ERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQAPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ +++ + + F V G + ++ Sbjct: 580 GATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 R +R V M Sbjct: 640 EHRAAAVAARANAKFRAELRDAQAAVFAPPAVM 672 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 85/268 (31%), Gaps = 16/268 (5%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + A V S S + ++ N N + Sbjct: 779 RMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGD 838 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A + + K I T + E + + S I + + + ++ Sbjct: 839 AMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAP----ALYAI--SLIVVFLCLAALYE 892 Query: 690 WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +++ L++ + A G+ ++ +LT IG + + +++ + ++ Sbjct: 893 -SWSIPTAVMLVVPLGVVGALLATMTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKE- 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 Y S + + + L + TS+A + V+P+A+ G + + G Sbjct: 951 --HYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGG 1008 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ +IF P+ + K R Sbjct: 1009 MLTGTFLAIFFV-PLFFVLTLRLFKVKR 1035 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 80/240 (33%), Gaps = 6/240 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 V L V S Q I + L +++ + + + Sbjct: 255 RDGSQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLK 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P I + + + + + + +++ + L + + Sbjct: 315 PYFPPGMDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T G A FG N + ++ IG V+D +VV + + + +S R Sbjct: 375 VLLGTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPRQATR 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+ + G + +M +PMA +GGS F+I + +V++ +I + Sbjct: 433 KSMGQITGALIGIAMVLAAVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPAL 492 >gi|54025660|ref|YP_119902.1| preprotein translocase subunit SecF [Nocardia farcinica IFM 10152] gi|54017168|dbj|BAD58538.1| putative protein exporter membrane protein [Nocardia farcinica IFM 10152] Length = 414 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 140/313 (44%), Gaps = 11/313 (3%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 L AI + R I+ L + S+ + G N+GIDF+GG ++ A Sbjct: 36 RHGFFNRLYTGTGAIDVIGKRRMWYAITALIVLISLASMLVRGFNFGIDFEGGSRIQFPA 95 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 V +L +S Q + ++ + + ++ + + + Sbjct: 96 GDATTSEVETVYHNTLGTDPVSVQTVGSGSTATMLIRSEALSTEQADQLASALFTEFQPL 155 Query: 646 VPLSTIQN----TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 T V ++ RK ++ +++ + + +YI +RF+ A+ A+ L+ Sbjct: 156 GNDGQPSRAAISTSDVSETWGDQITRKALIALLVFLVIVSVYIAVRFERDMAIAAMAALV 215 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRD 759 D+ T G ++L G+E V +LT++G+S+ D VVV+D++ +N + L+ ++ + Sbjct: 216 FDVGVTAGIYSLVGLEVTPATVIGILTILGFSLYDSVVVFDKVEENTRGILHLNRRTYAE 275 Query: 760 LIDKSINETLGRSVYTSMAAFIS-----VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 + ++N+TL RS+ T++ + V+ + + G + A+ G++V SSIF Sbjct: 276 QANLAVNQTLMRSINTALIGILPIVGLIVIAVWMLGVGTLKDLALVQLVGLLVGTYSSIF 335 Query: 815 IAAPILLFIYDWR 827 A P+L+ + + Sbjct: 336 FATPLLVSLKERW 348 >gi|206602539|gb|EDZ39020.1| SecD export membrane protein [Leptospirillum sp. Group II '5-way CG'] Length = 524 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 176/535 (32%), Positives = 275/535 (51%), Gaps = 42/535 (7%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPS-------AMPKNRISLGLDLRGGSHLVLEVDEDDFV 66 +G L L L + +P +ISLGLDL+GG + L+VD + V Sbjct: 9 FTLLGGAALLSFLLLLPSLPVWKDLPQGLRKVLPSGKISLGLDLKGGMSVTLQVDREKAV 68 Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126 +G LQ + I + + + + L Sbjct: 69 DGTLQEIAT-------AMKTPDMQPSIQGPAIHFPVPEGEQ----RETIKKRIARHYPYL 117 Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186 L ++ ++ LS ++ HA+ Q+ME+IR RIDQ G++E I+R G Sbjct: 118 -------TLSSSDASGVTFSLSPAEQKRIRKHAMTQAMEVIRNRIDQFGVAEPLIERQGK 170 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG----------------V 230 RIL++LPG DP R L+G TA++ F V N + Sbjct: 171 DRILVELPGINDPERAMSLIGRTARLQFLLVDDKNPDADKILEKKAPVPTADEILFSHRT 230 Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 YL+ +SG ++ A F +P V ++F+ GA+ F +TR+++ Sbjct: 231 DTNGQRIELPYLLVHGALMSGDLISDARVAFGQFN-EPYVSLTFNSAGAKLFDTITREHV 289 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 + LA+VLD V +APVI + I G+AQI+GNFT++ A L+ +LR+G+LP ++I++ Sbjct: 290 KERLAIVLDNVVYSAPVIQEEIAGGQAQITGNFTLKEAKDLSIVLRSGALPAPVHILQNV 349 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 VG LG DSI G A + +L++LFM V Y G++AD ++ LN+IL + ++ L A Sbjct: 350 TVGPSLGKDSIRAGIRATIFAGILVLLFMAVYYRLSGMIADGALVLNLILLVGAMAALHA 409 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAGI+L IG+ VDSN+L+ ERIREE R + V ++D G+ +A+ TI DS++T Sbjct: 410 TLTLPGIAGIILTIGMGVDSNVLIFERIREELRLGKPVRSAIDSGYDKAFLTIVDSHVTT 469 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 LI ++LF FG G ++GFA+T+ + I I++FTA+ R + + KK+ + I Sbjct: 470 LITALILFIFGTGPIKGFAVTLSVGIAINLFTALVGTRVVFDAMTARKKLDRLSI 524 Score = 145 bits (364), Expect = 3e-32, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 87/184 (47%), Gaps = 5/184 (2%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 I VGP + ++ IR GI I + I +L+++ + ++ + A L+L++ +G Sbjct: 344 HILQNVTVGPSLGKDSIRAGIRATIFAGILVLLFMAVYYRLS-GMIADGALVLNLILLVG 402 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 A L +A ++ IG V+ V++++R+R+ ++L R ID ++ Sbjct: 403 AMAALHATLTLPGIAGIILTIGMGVDSNVLIFERIREELRL---GKPVRSAIDSGYDKAF 459 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 V + + I+ L + ++G I FA+ ++ GI + +++ + ++ R K Sbjct: 460 LTIVDSHVTTLITALILFIFGTGPIKGFAVTLSVGIAINLFTAL-VGTRVVFDAMTARKK 518 Query: 830 NARI 833 R+ Sbjct: 519 LDRL 522 >gi|194443851|ref|YP_002042648.1| AcrB protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402514|gb|ACF62736.1| AcrB protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 1037 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 73/684 (10%), Positives = 185/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T A L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529 FGG R F+IT+ ++ +S+ A+ + A+ + KK Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518 Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + R + + ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 95/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T ++ ++ P + I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++ R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 60.9 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|15832586|ref|NP_311359.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7 str. Sakai] gi|168761071|ref|ZP_02786078.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4501] gi|217327886|ref|ZP_03443969.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. TW14588] gi|13362802|dbj|BAB36755.1| aminoglycoside efflux pump [Escherichia coli O157:H7 str. Sakai] gi|189368385|gb|EDU86801.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. EC4501] gi|217320253|gb|EEC28678.1| acriflavine resistance protein D [Escherichia coli O157:H7 str. TW14588] gi|326344949|gb|EGD68693.1| putative aminoglycoside efflux pump [Escherichia coli O157:H7 str. 1044] Length = 1037 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 78/689 (11%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + L + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGLTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATAEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 80.1 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATAEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|110804489|ref|YP_688009.1| acriflavin resistance protein [Shigella flexneri 5 str. 8401] gi|110614037|gb|ABF02704.1| acridine efflux pump [Shigella flexneri 5 str. 8401] Length = 1049 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSTPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|291281368|ref|YP_003498186.1| acriflavine resistance protein B [Escherichia coli O55:H7 str. CB9615] gi|209778468|gb|ACI87546.1| acridine efflux pump [Escherichia coli] gi|209778474|gb|ACI87549.1| acridine efflux pump [Escherichia coli] gi|290761241|gb|ADD55202.1| Acriflavine resistance protein B [Escherichia coli O55:H7 str. CB9615] gi|320638456|gb|EFX08170.1| multidrug efflux system protein AcrB [Escherichia coli O157:H7 str. G5101] gi|320643837|gb|EFX12960.1| multidrug efflux system protein AcrB [Escherichia coli O157:H- str. 493-89] gi|320649188|gb|EFX17766.1| multidrug efflux system protein AcrB [Escherichia coli O157:H- str. H 2687] gi|320656081|gb|EFX23997.1| multidrug efflux system protein AcrB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661231|gb|EFX28662.1| multidrug efflux system protein AcrB [Escherichia coli O55:H7 str. USDA 5905] gi|320665207|gb|EFX32300.1| multidrug efflux system protein AcrB [Escherichia coli O157:H7 str. LSU-61] Length = 1049 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|198244653|ref|YP_002217361.1| AcrB protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939169|gb|ACH76502.1| AcrB protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326625140|gb|EGE31485.1| AcrB protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1037 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 73/684 (10%), Positives = 185/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T A L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529 FGG R F+IT+ ++ +S+ A+ + A+ + KK Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518 Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + R + + ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 95/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T ++ ++ P + I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++ R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 60.9 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|74311041|ref|YP_309460.1| acridine efflux pump [Shigella sonnei Ss046] gi|73854518|gb|AAZ87225.1| acridine efflux pump [Shigella sonnei Ss046] Length = 1049 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|283836185|ref|ZP_06355926.1| acriflavine resistance protein F [Citrobacter youngae ATCC 29220] gi|291067536|gb|EFE05645.1| acriflavine resistance protein F [Citrobacter youngae ATCC 29220] Length = 1037 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 69/684 (10%), Positives = 187/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPQTTQDDISDYVASNVKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G + Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLQVQNDQIAAGQLGGTPALPNQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNSDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTANAIKAKLVELQPFFPQGMKVVYPYDTTPFVTISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526 FGG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNAK 518 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + ++ + + + I+ ++ + + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRKTGRYLIVYLIIVIGMAVLFMRLPTSFLPDEDQGVFMTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 AGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGLAFVSLKPWDERSG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 KENSVEAVIARATRAFSQIRDGLV 662 Score = 74.0 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 79/203 (38%), Gaps = 8/203 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + A L ++ + + + +T E+++ +I+ + M +++ Sbjct: 301 DTANAIKAKLVELQPFFPQGMKVVYPYDTTPFVTISIHEVVKTLFEAIILVFLVMYLFLQ 360 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 L + + + T A FG N + ++ IG V+D +VV + + Sbjct: 361 ---NIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV- 416 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 + ++ ++ +KS+++ G V +M +PMA +GGS F+I + Sbjct: 417 -ERVMMEDNLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 803 FGIVVAASSSIFIAAPILLFIYD 825 + ++ ++ + + + Sbjct: 476 SAMALSVLVALILTPALCATLLK 498 Score = 60.1 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + + L + G L + IS I + + + ++ W Sbjct: 838 EAMALMESLAEKLPNGIGHDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L ++ G+ ++ +LT IG S + +++ + + M Sbjct: 898 FSVMLVVPLGVVGALLAASIRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|169831514|ref|YP_001717496.1| preprotein translocase subunit SecF [Candidatus Desulforudis audaxviator MP104C] gi|169638358|gb|ACA59864.1| protein-export membrane protein SecF [Candidatus Desulforudis audaxviator MP104C] Length = 293 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 90/293 (30%), Positives = 153/293 (52%), Gaps = 7/293 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 F+R R + IS+L + I L GLN GIDF GG + V + V + VR+ L Sbjct: 2 FHFVRQRKYWYLISLLIIVPGIISLLFRGLNLGIDFTGGSLVEVQFQKQVSVQEVRAVLT 61 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + Q Q V + + + + + V T+ E VGP Sbjct: 62 GHGLERSVIQLSGD-------RQVLIRTGVITETQNQAMIESLGKEVGTLTVLRNEAVGP 114 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 I +EL ++ I+ ++ +A+A+++YI RF++ L AI L+ D T+G F+LF I+ + Sbjct: 115 VIGKELAQRAILALLAAAVAIVVYISWRFEFKQGLAAIVALLHDALITIGIFSLFWIQVD 174 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 VAAVLT++GYS+N +V++DR+R+N K + D++++S+ +T+ RS+ TS+ Sbjct: 175 SAFVAAVLTILGYSINATIVIFDRIRENAKAAKKTEPLEDVVNRSLWDTMARSINTSVTV 234 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +L + GG+ + +F + + G+V SSIFIA P+ L + ++ R Sbjct: 235 MFMLLALFFLGGATLKAFVLALMIGVVSGTWSSIFIAGPVWLDLRKRLPRSKR 287 >gi|200387366|ref|ZP_03213978.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207858639|ref|YP_002245290.1| acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|199604464|gb|EDZ03009.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|206710442|emb|CAR34800.1| acriflavin resistance protein F [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 1037 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 73/684 (10%), Positives = 185/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T A L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529 FGG R F+IT+ ++ +S+ A+ + A+ + KK Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518 Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + R + + ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 95/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T ++ ++ P + I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++ R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 958 G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|120597889|ref|YP_962463.1| preprotein translocase subunit SecD [Shewanella sp. W3-18-1] gi|146293939|ref|YP_001184363.1| preprotein translocase subunit SecD [Shewanella putrefaciens CN-32] gi|120557982|gb|ABM23909.1| protein-export membrane protein SecD [Shewanella sp. W3-18-1] gi|145565629|gb|ABP76564.1| protein-export membrane protein SecD [Shewanella putrefaciens CN-32] Length = 604 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 161/527 (30%), Positives = 275/527 (52%), Gaps = 34/527 (6%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 + ++ P L S+ PS + I LGLDLRGG +L+VD + + Sbjct: 94 TLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVEPVYQTQAE 153 Query: 72 MYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 D LR F++++ I S+ +++ ++ D+ + + + S Sbjct: 154 ALVDSLRQFIREQNIRGASVHLDQSSQLNVTLPDNDARAAVRQMMKQSYPNWQS------ 207 Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 + + I LSQ ++ + ++Q+++++R RI+++GI+E+ +QR G HRI Sbjct: 208 -----SNADDAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGEHRIR 262 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 I+LPG QDP+ + ++G TA ++F +V L+D GN V + Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLKDKSGNSVYVGRTPVLG 317 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306 G H+ A A+ V+I+ D +G ++ E +R NIGKP+A Sbjct: 318 GDHIVDARASIGEMGM-AEVNINLDRVGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAK 376 Query: 307 --------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 Q+ + +I+G T + A LA +LRAGS+ + IVEER +G LG+ Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417 ++I G A+ G+ + +LFM + Y + G VA+ ++ N+++ LL+L+ A LTLP I Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG+VL +G+AVD+N+L+ ERI+++ ++ +S ++D GF A+STIFD+N T +I VVL Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 + G G ++GFA+T+GL +L SMFT I RA++ + + + Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G + + S + + + ++ L G Q Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I G + + L+++ + ++ Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R++ +K Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID + + I+ + + G I FA+ + G++ + Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + ++ +Y A Sbjct: 581 TGIFASRALINLVYGRDASR 600 >gi|148381013|ref|YP_001255554.1| protein-export membrane protein SecF [Clostridium botulinum A str. ATCC 3502] gi|153931377|ref|YP_001385384.1| preprotein translocase subunit SecF [Clostridium botulinum A str. ATCC 19397] gi|153937085|ref|YP_001388791.1| preprotein translocase subunit SecF [Clostridium botulinum A str. Hall] gi|148290497|emb|CAL84625.1| protein-export membrane protein [Clostridium botulinum A str. ATCC 3502] gi|152927421|gb|ABS32921.1| protein-export membrane protein SecF [Clostridium botulinum A str. ATCC 19397] gi|152932999|gb|ABS38498.1| protein-export membrane protein SecF [Clostridium botulinum A str. Hall] Length = 287 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 148/287 (51%), Gaps = 8/287 (2%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS++ + + L GLNYGIDFKGG + + + V ++ Sbjct: 7 KTKIWFSISLIIILTGMFFLMKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 ++ + N + ++ ++ +K K + + + +GP + +E Sbjct: 67 SVTNKV----NNTQIEIRSNSLTDEEINKLFSDIKSKYNLKDKD--LVSQQRIGPSVGKE 120 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L RK ++ +II+ IAMLIY+ IRF++ FAL AI L+ DI T+ +A+F + + + +A Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFNFALAAILGLVHDILITISVYAIFKLPVSSSFIA 180 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 AVLT++GYS+ND +V++DR+R+N K ++ + SI +T+ RS+ T + +++ Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DISEIANISITQTMSRSINTVLTTLFTIV 239 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + V+ I FA P+ GI+ SSIFI++P+ + + N Sbjct: 240 SVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTKLGNK 285 >gi|260853684|ref|YP_003227575.1| multidrug efflux system protein AcrB [Escherichia coli O26:H11 str. 11368] gi|260866622|ref|YP_003233024.1| multidrug efflux system protein AcrB [Escherichia coli O111:H- str. 11128] gi|257752333|dbj|BAI23835.1| multidrug efflux system protein AcrB [Escherichia coli O26:H11 str. 11368] gi|257762978|dbj|BAI34473.1| multidrug efflux system protein AcrB [Escherichia coli O111:H- str. 11128] gi|323153501|gb|EFZ39755.1| inner membrane protein [Escherichia coli EPECa14] gi|323178267|gb|EFZ63845.1| inner membrane protein [Escherichia coli 1180] Length = 1049 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|167037437|ref|YP_001665015.1| preprotein translocase subunit SecF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040103|ref|YP_001663088.1| preprotein translocase subunit SecF [Thermoanaerobacter sp. X514] gi|256752580|ref|ZP_05493434.1| protein-export membrane protein SecF [Thermoanaerobacter ethanolicus CCSD1] gi|300914187|ref|ZP_07131503.1| protein-export membrane protein SecF [Thermoanaerobacter sp. X561] gi|307724578|ref|YP_003904329.1| protein-export membrane protein SecF [Thermoanaerobacter sp. X513] gi|320115850|ref|YP_004186009.1| protein-export membrane protein SecF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854343|gb|ABY92752.1| protein-export membrane protein SecF [Thermoanaerobacter sp. X514] gi|166856271|gb|ABY94679.1| protein-export membrane protein SecF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748518|gb|EEU61568.1| protein-export membrane protein SecF [Thermoanaerobacter ethanolicus CCSD1] gi|300889122|gb|EFK84268.1| protein-export membrane protein SecF [Thermoanaerobacter sp. X561] gi|307581639|gb|ADN55038.1| protein-export membrane protein SecF [Thermoanaerobacter sp. X513] gi|319928941|gb|ADV79626.1| protein-export membrane protein SecF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 303 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 73/297 (24%), Positives = 143/297 (48%), Gaps = 4/297 (1%) Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 I + IS + + + +F +G N+GIDF GG + + D + + Sbjct: 3 QHRFHIDVIGKTKIWFAISGIVILIGVIAMFVNGFNWGIDFTGGTIMEFQIGKSFDTADI 62 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 L + ++ D Q + + + + + + ++ + + + + Sbjct: 63 IKILNNYKVKDFQVQKIGTKGDTVSIKTSPISNETRLSIIKDIES---KYNLTENDLIMS 119 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 + VGP + E+ I +++++ M IY+ RF++ + A+ L+ D+ + +A+F Sbjct: 120 QQVGPSLGAEIKFGMIRALLLASAVMFIYLGFRFEFEMSGAAVIALLHDVIILISIYAIF 179 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 I N +AAVLT+ GYSVN VV++DR+R N+K+ S + + + S+N+TL RS+ Sbjct: 180 HITVNAPFIAAVLTVFGYSVNATVVIFDRIRDNLKIMRRS-DYAKIANVSVNQTLTRSIN 238 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 T++ I ++ M G + FA+P+ GI+ SSIFI+ P+ + I + + Sbjct: 239 TTLTTLIILVLMYFLGPKALKDFALPLLIGIISGTYSSIFISTPLWVLIKNREKRRK 295 >gi|169632424|ref|YP_001706160.1| preprotein translocase subunit SecF [Acinetobacter baumannii SDF] gi|169151216|emb|CAO99899.1| preprotein translocase, IISP family, membrane subunit [Acinetobacter baumannii] Length = 321 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 97/310 (31%), Positives = 157/310 (50%), Gaps = 4/310 (1%) Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 M + P ++ + D I FM+ SIL ++ SI + T GLN G+DF GG Sbjct: 1 MMTKVTQQPSKQYGRLVDAKIIPFMKIAKPAAIFSILITLASIFFIGTKGLNLGLDFTGG 60 Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 + + +P + + V L+ D Q K+ LVR+ Q + + Sbjct: 61 VSAELNYAQPANQAEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQDIKVE---DLNNAI 117 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698 K + + + + VG ++ EL + V ++ I MLIY+ IRF++ A+GA+ Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 +L DI +G FALF F+LT +AAVL +IG+S+ND +VV DR+R+N + + R Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 +++D ++ ETL R+++TSM + VL M GG + F++ M G+ V SSI+I Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296 Query: 819 ILLFIYDWRA 828 L+ R Sbjct: 297 FALWRGLNRQ 306 >gi|110611192|gb|ABG77966.1| AcrB [Enterobacter cloacae] Length = 1048 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 68/685 (9%), Positives = 176/685 (25%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLSIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + + Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + S Sbjct: 280 KFNGKPASGLGIKLATGANALDTATAIRAELKKMEPYFPSGLKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T A LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGGHGEHKGFFGWFNRMF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + + I+ + +I + + +G Sbjct: 520 DKSTHHYTDSVGNILRSTGRYLLLYIIIVAGMAILFVRLPSSFLPDEDQGVFLTMAQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + ++ + + E F V G +K Sbjct: 580 GASQERTQKVLDEVTDYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGK 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 ENKVEAITGRAMGTFSQIKDAMVFA 664 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 84/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + DI + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGKPASGLGIKLATGANALDTATAIRAELKKMEPYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMNLMEELASKLPSGVGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + VLP+ + G + + G++ A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|16128446|ref|NP_414995.1| multidrug efflux system protein [Escherichia coli str. K-12 substr. MG1655] gi|82542955|ref|YP_406902.1| acridine efflux pump [Shigella boydii Sb227] gi|89107331|ref|AP_001111.1| multidrug efflux system protein [Escherichia coli str. K-12 substr. W3110] gi|91209535|ref|YP_539521.1| acridine efflux pump [Escherichia coli UTI89] gi|117622720|ref|YP_851633.1| acridine efflux pump [Escherichia coli APEC O1] gi|157156955|ref|YP_001461647.1| acriflavine resistance protein B [Escherichia coli E24377A] gi|157159988|ref|YP_001457306.1| acriflavine resistance protein B [Escherichia coli HS] gi|170021150|ref|YP_001726104.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Escherichia coli ATCC 8739] gi|170080047|ref|YP_001729367.1| multidrug efflux system protein [Escherichia coli str. K-12 substr. DH10B] gi|170680127|ref|YP_001742606.1| acriflavine resistance protein B [Escherichia coli SMS-3-5] gi|188496392|ref|ZP_03003662.1| acriflavine resistance protein B [Escherichia coli 53638] gi|191167501|ref|ZP_03029314.1| acriflavine resistance protein B [Escherichia coli B7A] gi|193064202|ref|ZP_03045286.1| acriflavine resistance protein B [Escherichia coli E22] gi|193067539|ref|ZP_03048506.1| acriflavine resistance protein B [Escherichia coli E110019] gi|194429033|ref|ZP_03061565.1| acriflavine resistance protein B [Escherichia coli B171] gi|194437486|ref|ZP_03069583.1| acriflavine resistance protein B [Escherichia coli 101-1] gi|209917678|ref|YP_002291762.1| acridine efflux pump protein AcrB [Escherichia coli SE11] gi|218557372|ref|YP_002390285.1| multidrug efflux system protein [Escherichia coli S88] gi|218693924|ref|YP_002401591.1| multidrug efflux system protein [Escherichia coli 55989] gi|237707542|ref|ZP_04538023.1| acriflavine resistance protein B [Escherichia sp. 3_2_53FAA] gi|238899749|ref|YP_002925545.1| multidrug efflux system protein [Escherichia coli BW2952] gi|253774548|ref|YP_003037379.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|256020433|ref|ZP_05434298.1| multidrug efflux system protein [Shigella sp. D9] gi|256023920|ref|ZP_05437785.1| multidrug efflux system protein [Escherichia sp. 4_1_40B] gi|260842662|ref|YP_003220440.1| multidrug efflux system protein AcrB [Escherichia coli O103:H2 str. 12009] gi|293408610|ref|ZP_06652449.1| multidrug efflux protein [Escherichia coli B354] gi|293413716|ref|ZP_06656365.1| acriflavin resistance protein B [Escherichia coli B185] gi|293418532|ref|ZP_06660967.1| acriflavin resistance protein B [Escherichia coli B088] gi|300818205|ref|ZP_07098416.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 107-1] gi|300820292|ref|ZP_07100444.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 119-7] gi|300903267|ref|ZP_07121196.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 84-1] gi|300918153|ref|ZP_07134761.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 115-1] gi|300924190|ref|ZP_07140182.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 182-1] gi|300930235|ref|ZP_07145648.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 187-1] gi|300947882|ref|ZP_07162032.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 116-1] gi|300958031|ref|ZP_07170195.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 175-1] gi|301301615|ref|ZP_07207750.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 124-1] gi|301330670|ref|ZP_07223272.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 78-1] gi|301647390|ref|ZP_07247201.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 146-1] gi|307137105|ref|ZP_07496461.1| multidrug efflux system protein AcrB [Escherichia coli H736] gi|307312161|ref|ZP_07591797.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli W] gi|309794803|ref|ZP_07689224.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 145-7] gi|312970560|ref|ZP_07784741.1| acriflavine resistance protein B [Escherichia coli 1827-70] gi|331640984|ref|ZP_08342119.1| acriflavine resistance protein B [Escherichia coli H736] gi|331651401|ref|ZP_08352426.1| acriflavine resistance protein B [Escherichia coli M718] gi|331656519|ref|ZP_08357481.1| acriflavine resistance protein B [Escherichia coli TA206] gi|331666820|ref|ZP_08367694.1| acriflavine resistance protein B [Escherichia coli TA271] gi|331676135|ref|ZP_08376847.1| acriflavine resistance protein B [Escherichia coli H591] gi|331681856|ref|ZP_08382489.1| acriflavine resistance protein B [Escherichia coli H299] gi|332281612|ref|ZP_08394025.1| multidrug efflux system protein [Shigella sp. D9] gi|399001|sp|P31224|ACRB_ECOLI RecName: Full=Acriflavine resistance protein B gi|31615949|pdb|1OY6|A Chain A, Structural Basis Of The Multiple Binding Capacity Of The Acrb Multidrug Efflux Pump gi|31615950|pdb|1OY8|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The Acrb Multidrug Efflux Pump gi|31615951|pdb|1OY9|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The Acrb Multidrug Efflux Pump gi|31615952|pdb|1OYD|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb Multidrug Efflux Pump gi|31615953|pdb|1OYE|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb Multidrug Efflux Pump gi|146386527|pdb|2I6W|A Chain A, Crystal Structure Of The Multidrug Efflux Transporter Acrb gi|162330120|pdb|2RDD|A Chain A, X-Ray Crystal Structure Of Acrb In Complex With A Novel Transmembrane Helix. gi|193506820|pdb|3D9B|A Chain A, Symmetric Structure Of E. Coli Acrb gi|217035266|pdb|2W1B|A Chain A, The Structure Of The Efflux Pump Acrb In Complex With Bile Acid gi|290406|gb|AAA23411.1| acriflavine resistance protein [Escherichia coli] gi|532311|gb|AAA67135.1| 114 kDa protein [Escherichia coli] gi|1773144|gb|AAB40216.1| probable transmembrane protein AcrE [Escherichia coli] gi|1786667|gb|AAC73564.1| multidrug efflux system protein [Escherichia coli str. K-12 substr. MG1655] gi|81244366|gb|ABB65074.1| acridine efflux pump [Shigella boydii Sb227] gi|85674601|dbj|BAE76241.1| multidrug efflux system protein [Escherichia coli str. K12 substr. W3110] gi|91071109|gb|ABE05990.1| acridine efflux pump [Escherichia coli UTI89] gi|115511844|gb|ABI99918.1| acridine efflux pump [Escherichia coli APEC O1] gi|157065668|gb|ABV04923.1| acriflavine resistance protein B [Escherichia coli HS] gi|157078985|gb|ABV18693.1| acriflavine resistance protein B [Escherichia coli E24377A] gi|169756078|gb|ACA78777.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli ATCC 8739] gi|169887882|gb|ACB01589.1| multidrug efflux system protein [Escherichia coli str. K-12 substr. DH10B] gi|170517845|gb|ACB16023.1| acriflavine resistance protein B [Escherichia coli SMS-3-5] gi|188491591|gb|EDU66694.1| acriflavine resistance protein B [Escherichia coli 53638] gi|190902457|gb|EDV62193.1| acriflavine resistance protein B [Escherichia coli B7A] gi|192929231|gb|EDV82841.1| acriflavine resistance protein B [Escherichia coli E22] gi|192958951|gb|EDV89387.1| acriflavine resistance protein B [Escherichia coli E110019] gi|194412970|gb|EDX29260.1| acriflavine resistance protein B [Escherichia coli B171] gi|194423655|gb|EDX39645.1| acriflavine resistance protein B [Escherichia coli 101-1] gi|209910937|dbj|BAG76011.1| acridine efflux pump protein AcrB [Escherichia coli SE11] gi|218350656|emb|CAU96348.1| multidrug efflux system protein [Escherichia coli 55989] gi|218364141|emb|CAR01806.1| multidrug efflux system protein [Escherichia coli S88] gi|222032256|emb|CAP74995.1| acriflavine resistance protein B [Escherichia coli LF82] gi|226898752|gb|EEH85011.1| acriflavine resistance protein B [Escherichia sp. 3_2_53FAA] gi|238861810|gb|ACR63808.1| multidrug efflux system protein [Escherichia coli BW2952] gi|242376244|emb|CAQ30935.1| AcrB RND-type permease, subunit of AcrAB-TolC multidrug efflux transport system [Escherichia coli BL21(DE3)] gi|253325592|gb|ACT30194.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976642|gb|ACT42312.1| multidrug efflux system protein [Escherichia coli BL21(DE3)] gi|257757809|dbj|BAI29306.1| multidrug efflux system protein AcrB [Escherichia coli O103:H2 str. 12009] gi|260450352|gb|ACX40774.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli DH1] gi|291325060|gb|EFE64475.1| acriflavin resistance protein B [Escherichia coli B088] gi|291433774|gb|EFF06747.1| acriflavin resistance protein B [Escherichia coli B185] gi|291471788|gb|EFF14271.1| multidrug efflux protein [Escherichia coli B354] gi|300315298|gb|EFJ65082.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 175-1] gi|300404706|gb|EFJ88244.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 84-1] gi|300414663|gb|EFJ97973.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 115-1] gi|300419643|gb|EFK02954.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 182-1] gi|300452560|gb|EFK16180.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 116-1] gi|300461807|gb|EFK25300.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 187-1] gi|300527077|gb|EFK48146.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 119-7] gi|300529096|gb|EFK50158.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 107-1] gi|300843112|gb|EFK70872.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 124-1] gi|300843331|gb|EFK71091.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 78-1] gi|301074474|gb|EFK89280.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 146-1] gi|306907663|gb|EFN38165.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli W] gi|307628069|gb|ADN72373.1| multidrug efflux system protein AcrB [Escherichia coli UM146] gi|308121456|gb|EFO58718.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 145-7] gi|309700722|emb|CBJ00018.1| acriflavin resistance protein B [Escherichia coli ETEC H10407] gi|310337209|gb|EFQ02347.1| acriflavine resistance protein B [Escherichia coli 1827-70] gi|312945039|gb|ADR25866.1| multidrug efflux system protein AcrB [Escherichia coli O83:H1 str. NRG 857C] gi|315059741|gb|ADT74068.1| multidrug efflux system protein [Escherichia coli W] gi|315135143|dbj|BAJ42302.1| multidrug efflux system protein [Escherichia coli DH1] gi|315256291|gb|EFU36259.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 85-1] gi|315289915|gb|EFU49305.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 110-3] gi|315616596|gb|EFU97213.1| inner membrane protein [Escherichia coli 3431] gi|320184098|gb|EFW58917.1| RND efflux system, inner membrane transporter CmeB [Shigella flexneri CDC 796-83] gi|320201706|gb|EFW76282.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli EC4100B] gi|323160427|gb|EFZ46375.1| inner membrane protein [Escherichia coli E128010] gi|323184707|gb|EFZ70078.1| inner membrane protein [Escherichia coli 1357] gi|323379694|gb|ADX51962.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli KO11] gi|323938647|gb|EGB34896.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli E1520] gi|323943267|gb|EGB39423.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli E482] gi|323945245|gb|EGB41302.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H120] gi|323952927|gb|EGB48795.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H252] gi|323958655|gb|EGB54358.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H263] gi|323963451|gb|EGB59013.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H489] gi|324116950|gb|EGC10863.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli E1167] gi|331037782|gb|EGI10002.1| acriflavine resistance protein B [Escherichia coli H736] gi|331051142|gb|EGI23194.1| acriflavine resistance protein B [Escherichia coli M718] gi|331054767|gb|EGI26776.1| acriflavine resistance protein B [Escherichia coli TA206] gi|331066044|gb|EGI37928.1| acriflavine resistance protein B [Escherichia coli TA271] gi|331076193|gb|EGI47475.1| acriflavine resistance protein B [Escherichia coli H591] gi|331081058|gb|EGI52223.1| acriflavine resistance protein B [Escherichia coli H299] gi|332098506|gb|EGJ03472.1| inner membrane protein [Shigella boydii 3594-74] gi|332103964|gb|EGJ07310.1| multidrug efflux system protein [Shigella sp. D9] gi|332341828|gb|AEE55162.1| multidrug efflux system protein AcrB [Escherichia coli UMNK88] Length = 1049 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|89094741|ref|ZP_01167676.1| protein export protein SecF [Oceanospirillum sp. MED92] gi|89080995|gb|EAR60232.1| protein export protein SecF [Oceanospirillum sp. MED92] Length = 306 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 87/284 (30%), Positives = 159/284 (55%), Gaps = 5/284 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM R S++ + S+ L +GL +G+DF GG + + +P DL+ +R L+ Sbjct: 7 YNFMGFRKIAAICSVVLLVVSLGSLVVNGLKFGLDFTGGSLVEIGYEQPADLNKIRGQLK 66 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 D Q F + L+RL G +++ ++ E VG Sbjct: 67 GAGYDDAVVQTFGSPTDILIRL----GQDHDPKLGDKVLSALQEGETQQLNLRRNEFVGA 122 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ EL +G +G++++ +++Y+ RF+ F+LGA+ L D+ LGFF+L I+F+ Sbjct: 123 QVGEELREQGGMGMLLALFMIMVYVAFRFQIKFSLGAVAALAHDVLIVLGFFSLLQIDFD 182 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AA+L +IGYS+ND +VV DR+R+N + + ++++ S+ +TLGR++ TS+ Sbjct: 183 LTVLAAILAVIGYSLNDTIVVSDRIRENFRKMRKGTAI-EIMNASLTQTLGRTLVTSLTT 241 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++ +AV+GG +I FAI + G++V SSI+++A +L+ + Sbjct: 242 LLVLVALAVFGGEMIHGFAIALLVGVLVGTYSSIYVSANVLVAM 285 >gi|218885644|ref|YP_002434965.1| preprotein translocase subunit SecF [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756598|gb|ACL07497.1| protein-export membrane protein SecF [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 361 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 151/343 (44%), Gaps = 47/343 (13%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANR 587 F I F+ R ISI+ + + + G YGIDF GG + V +R Sbjct: 1 MGFSFIRHDTNYDFVGMRHKAYVISIVLILVGLLSIVFKGGLTYGIDFAGGAIVQVKFDR 60 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 PV ++ +LES + ++ Q F + + +S R Sbjct: 61 PVADDTLKKSLESASLPGLAVQRFGEGETDYLIRISHSDESAEAIRTAVTGALTANIKDA 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY---------------- 691 +Q E+VGPK+ +L K + + + + + IYI RF+ Sbjct: 121 TFEVQRLEMVGPKVGADLKSKAVEALYYAVLLIAIYISGRFERRWMASAVMAGTLAGGMY 180 Query: 692 ------------------------------FALGAITTLILDITKTLGFFALFGIEFNLT 721 FALGAI L+ D+ T+G +L E +L Sbjct: 181 LLGLVGVPRLWLVPFSLVLTLVLCWKLRLNFALGAIVALVHDVLITMGVLSLLNKEVDLN 240 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 VAA+LTL+GYS+ND ++VYDR+R+ ++ + ++ +I+ SIN+TL R++ T + Sbjct: 241 IVAAILTLVGYSLNDTIIVYDRIRETLRTHRKEWTYAHIINASINQTLSRTILTGGTTLV 300 Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +L + V GG VI FA+ M G+ V SSIF+A+P+LL Sbjct: 301 VILALYVLGGGVIHDFALTMLVGVFVGILSSIFVASPVLLHFG 343 >gi|75910042|ref|YP_324338.1| hydrophobe/amphiphile efflux-1 HAE1 protein [Anabaena variabilis ATCC 29413] gi|75703767|gb|ABA23443.1| Hydrophobe/amphiphile efflux-1 HAE1 [Anabaena variabilis ATCC 29413] Length = 1057 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 85/686 (12%), Positives = 193/686 (28%), Gaps = 43/686 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + + +I +G + P DR+P P + + Sbjct: 8 RRPVFTSVCAIIILLVGAISI-----PTLPTDRYPEISPTQIV---------VNANYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120 + V + + + ++ S + IT++F SR K+ A V + Sbjct: 54 SAEVVENTVTSILERQINGVQGMKYMTSSSSNDGTSTITVTFDPSRDKDIAAVDVQNRVS 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +L ++ + + + ++ +Q + S + +D + + Sbjct: 114 IAQPQLPEAVQRTGVTVSKQSNNILLAMGLYSEQQEYDTVFLSNYADQYIVDALKRLDGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + + DP+RL T + N G + Q Sbjct: 174 GEARIFGERRYAMRLWLDPNRLTSRKLTAQDVIDAINEQNIQVGVGQIGQQPSLPDQMYQ 233 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 ++ + +S + + + Sbjct: 234 IDLQARGRLS-------------EATEFADMVIKTGTDGTLIKLKDVGRAELGAENYSSF 280 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + A L P V S + Sbjct: 281 LRFRGNEGVGIGIFPTPGSNALEVSKAVKAEMARLAQSFPPGLKYQVAFDTTLFVEESLA 340 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV++V+F+ + + L+ +I L +I T A + + G ++ ++ G+ Sbjct: 341 EVVKTLIEALILVVLVIFLFLQDWRTTLIPVITIPLTLIGTFAFIKVFGFSINTLTLFGL 400 Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 L GL VD I+V E I + S + + + +++ + V + F Sbjct: 401 TLATGLVVDDAIIVVENISRLIEEEGMSPRQAASESMRELFGAVIATSLVLMAVFVPVAF 460 Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---------IDINP 527 F G + FA+T+ S+ IS F A+++ ++ ++R + I+ Sbjct: 461 FPGTTGQIYKQFALTIAFSMAISTFLALTLTPSLSALLLRRGQRPRGWLGKIFHQINRFL 520 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + I + ++ L + +G + Sbjct: 521 DWMRRGYERSLNILVKVRAIVVLLFLASIALTGWVYLSVPTAFIPDEDQGYFITIIQGPE 580 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V L+ + + ++ + G F + G+S + ++ P Sbjct: 581 GVSLNYTSNVMAQVEKEILKLPEVTG--TFAIGGFSFSGNSANSGVIFTTLQPWDERQQP 638 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673 + + + I V Sbjct: 639 GQSAPEIIGKLAGVFANITEARIFPV 664 Score = 93.6 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 92/247 (37%), Gaps = 6/247 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L V + + E + +++ ++ ++ ++ + P Sbjct: 262 IKLKDVGRAELGAENYSSFLRFRGNEGVGIGIFPTPGSNALEVSKAVKAEMARLAQSFPP 321 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707 E + + + +I + I +++ I++ W L + T+ L + T Sbjct: 322 GLKYQVAFDTTLFVEESLAEVVKTLIEALILVVLVIFLFLQDWRTTLIPVITIPLTLIGT 381 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 F +FG N + + G V+D ++V + + + + +S R +S+ E Sbjct: 382 FAFIKVFGFSINTLTLFGLTLATGLVVDDAIIVVENI--SRLIEEEGMSPRQAASESMRE 439 Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + TS+ +P+A + G + FA+ +AF + ++ ++ + + + Sbjct: 440 LFGAVIATSLVLMAVFVPVAFFPGTTGQIYKQFALTIAFSMAISTFLALTLTPSLSALLL 499 Query: 825 DWRAKNA 831 + Sbjct: 500 RRGQRPR 506 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 78/207 (37%), Gaps = 11/207 (5%) Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 S T +E + K++ + + V + + + + + Sbjct: 834 SSGQATTAMEKLAKEVLPASMGYEWSGITAEEQESGG----QAPVIFGLGLVFVFLVLAA 889 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 +++ + L + ++ L I L L G+ ++ ++ LIG + + +++ + Sbjct: 890 QYENYVDPLIIMLSVPLAILGALSAQWLRGLSNDVFCQVGLVMLIGLASKNAILIVEFAN 949 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMA 802 +L + ++ E L + TS++ + V P+ G + S +A Sbjct: 950 ---QLRERGLPIIKATVQASQERLRPILMTSLSFILGVWPLINPIGAGAASRKSLGTAVA 1006 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829 G++V+ S+F+ + + I R + Sbjct: 1007 GGMIVSTVLSLFVVPILYIVISKIRDR 1033 >gi|322807363|emb|CBZ04937.1| protein-export membrane protein SecF (TC 3.A.5.1.1) [Clostridium botulinum H04402 065] Length = 287 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 148/287 (51%), Gaps = 8/287 (2%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS++ + + L GLNYGIDFKGG + + + V ++ Sbjct: 7 KTKIWFSISLIIILTGMFFLMKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 ++ + N + ++ ++ +K K + + + +GP + +E Sbjct: 67 SVTNKV----NNTQIEIRSNSLTDEEINKLFSDIKSKYNLKDKD--LVSQQRIGPSVGKE 120 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L RK ++ +II+ IAMLIY+ IRF++ FAL AI L+ DI T+ +A+F + + + +A Sbjct: 121 LKRKALLALIIADIAMLIYVGIRFEFNFALAAILGLVHDILITISVYAIFKLPVSSSFIA 180 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 AVLT++GYS+ND +V++DR+R+N K ++ + SI +T+ RS+ T + +++ Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DISEIANISITQTMSRSINTVLTTLFTIV 239 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + V+ I FA P+ GI+ SSIFI++P+ + + N Sbjct: 240 SVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTKLGNK 285 >gi|331645647|ref|ZP_08346750.1| acriflavine resistance protein B [Escherichia coli M605] gi|281177632|dbj|BAI53962.1| acridine efflux pump protein AcrB [Escherichia coli SE15] gi|330910257|gb|EGH38767.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli AA86] gi|331044399|gb|EGI16526.1| acriflavine resistance protein B [Escherichia coli M605] Length = 1049 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|320181095|gb|EFW56015.1| RND efflux system, inner membrane transporter CmeB [Shigella boydii ATCC 9905] gi|332094149|gb|EGI99200.1| inner membrane protein [Shigella boydii 5216-82] Length = 1049 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELIEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|94987436|ref|YP_595369.1| acriflavin resistance protein D [Lawsonia intracellularis PHE/MN1-00] gi|94731685|emb|CAJ55048.1| acriflavin resistance protein D [Lawsonia intracellularis PHE/MN1-00] Length = 1049 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 75/553 (13%), Positives = 161/553 (29%), Gaps = 39/553 (7%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 +R + ++ I IG+L ++++P+ P + ++ Sbjct: 16 LRRPIFSTVISLFITFIGILAIF-----SLPIEQYPNLTPP-------------QVEIKT 57 Query: 61 DEDDFVNGFL-QMYSDELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKV 115 + + + + L + + + +T++F E V Sbjct: 58 TYNGASANTVSESVASVLEEQVNGVDNMSYMNSVSAGTGTMTLTVTFDVGTDPEEATINV 117 Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175 +Q KL D ++ + + + + I S + +D + Sbjct: 118 NNRVQLATPKLPQDVQRTGISVLKKSPAILQIVFLTSPDERYDTIFLSNYALLNIVDDLK 177 Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235 + P R+ QL T + N G + Sbjct: 178 RVPGVGDVQNFAGQDYAIRVWLKPDRMEQLKITPNDVINAINDQNIQIGAGRIGDEPVSS 237 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 S G + + K + + I E I Sbjct: 238 SIGVTWQIITKGRL-------------ETPEQFENIILRTEPDGSILRLKDIARIELGAQ 284 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 V + T E + L + Sbjct: 285 VYNFTGRQDGLAAIPIGIFLAPGANALTTAEAVRVKMKELSTQFPVGVAYDIPYDTTTFV 344 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 + T LV +V+++ + + L+ ++ ++++ T A + LLG ++ Sbjct: 345 NIAIKEVVKTLCEAMFLVFLVVYLFLQNWRATLIPCLAVPVSIVGTFAGMHLLGFSINTL 404 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 ++ G+VL IG+ VD I+V E + + Q V + S S I + + Sbjct: 405 TMFGLVLAIGIVVDDAIVVLENVERHISEGQPVHIATAKAMSEVTSAIIAIVLVLCAVFI 464 Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 + F G G + FAIT+ +S++IS A++ A+ I ++R + + + Sbjct: 465 PVAFIGGLAGRMYQQFAITIAVSVVISGVVALTFTPALCIVLLRNYEPTTSSFFKNFNDW 524 Query: 533 LIPDCIAIQFMRA 545 + Sbjct: 525 FANITGKYIHIVK 537 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 72/200 (36%), Gaps = 7/200 (3%) Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 + + K+++ P+ + I++ + + + + + +++ + Sbjct: 312 TTAEAVRVKMKELSTQFPVGVAYDIPYDTTTFVNIAIKEVVKTLCEAMFLVFLVVYLFLQ 371 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W L + + I T L G N + ++ IG V+D +VV + + Sbjct: 372 NWRATLIPCLAVPVSIVGTFAGMHLLGFSINTLTMFGLVLAIGIVVDDAIVVLENV---E 428 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805 + + K+++E + + +P+A GG FAI +A + Sbjct: 429 RHISEGQPVHIATAKAMSEVTSAIIAIVLVLCAVFIPVAFIGGLAGRMYQQFAITIAVSV 488 Query: 806 VVAASSSIFIAAPILLFIYD 825 V++ ++ + + + Sbjct: 489 VISGVVALTFTPALCIVLLR 508 Score = 64.7 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 75/171 (43%), Gaps = 10/171 (5%) Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727 G +++S I + + + +++ W L +T + + L GI ++ A++ Sbjct: 878 GSFVLLLSLIMVFLILAAQYESWSLPLTILTAVPFAAFGAILAIWLRGIANDVYFQVALI 937 Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787 TL+G S + +++ + + +L ++ D I+++ + TS+A + +P+A Sbjct: 938 TLVGLSAKNAILIVEFAVEKYRL--DGMNIIDAIEEASRLRFRPIIMTSLAFILGCVPLA 995 Query: 788 VW---GGSVIGSFAIPMAFGIVVAASSS----IFIAAPILLFIYDWRAKNA 831 + G + + + G+++A + F I++ + +K + Sbjct: 996 ISTGAGAASRHAIGTSVIGGMLLATIIAPLFIPFFFRWIMVISEKFSSKKS 1046 >gi|260596861|ref|YP_003209432.1| multidrug efflux system protein AcrB [Cronobacter turicensis z3032] gi|260216038|emb|CBA28742.1| Acriflavine resistance protein B [Cronobacter turicensis z3032] Length = 1049 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 67/686 (9%), Positives = 174/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++PS P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLSIM-----KLPVAQYPSIAPPAVT---------INATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDGLMYMSSTSDSSGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVLGLINTDGSMKQEDIADYAGANIKDPISRTTGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DVQLFGSQ-YAMRIWLDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + R + Sbjct: 233 SIIAQTRLTSAE-------------EFSKILLKVNQDGSRVLLRDVAKVELGGENYDIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T E A L + S Sbjct: 280 RYNGQPAAGLGIKLATGANALDTAEAVRKTIAGLEPFFPSGLKVVYPYDTTPFVKISIFE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEGLPPKEATRKSMGQIQGALVGIALVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++++S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMVLSVIVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + + ++ + + + +G Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLLIVVAMAFLFIRLPSSFLPEEDQGVFLTMAQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + F V G +K Sbjct: 580 AGATQERTQKVLDEVTNYYLTQEKANVNSVFTVNGFGFSGRGQNTGLAFVSLKNWDERSG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 640 AENKVPAITGRAMARFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 81/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + L +++ + + P Sbjct: 264 DVAKVELGGENYDIIARYNGQPAAGLGIKLATGANALDTAEAVRKTIAGLEPFFPSGLKV 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + + + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIFEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V ++ +PMA +GGS F+I + +V++ ++ + + Sbjct: 442 LVGIALVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMVLSVIVALILTPAL 492 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L T + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEQLASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 899 FSVMLVVPLGVIGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|217968941|ref|YP_002354175.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Thauera sp. MZ1T] gi|217506268|gb|ACK53279.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Thauera sp. MZ1T] Length = 1051 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 68/547 (12%), Positives = 149/547 (27%), Gaps = 34/547 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L Q + ++PS P + + Sbjct: 8 RPIFAWVIAIVIMLGGALSI-----RQLPVSQYPSIAPPAIV---------INAKYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L + TL+F+ + +V +Q Sbjct: 54 AKAVEDSVTQIIEQKLTGLDGLLYMKSTSDAYGNASTTLTFSADTDPDIAQVQVQNKMQT 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L ++ + +++ + S ++ D + + Sbjct: 114 ALPLLPQAVQQQGVTVAKSAMNFLMVVGFVSADGSMDGTDLSDFLVSSVQDPLSRVDGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP+RL T + + N G G Sbjct: 174 EVQVFGAQ-YAMRVWIDPARLTNYRLTPGDVRTALMAQNTQVSAGQLGGAPAVPGQGFTA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + I Sbjct: 233 TITAQSRL-------------QTVAEFEDILLRSSQQGGEVRLKDVARIEIGAENYGTVA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T ++ +V S Sbjct: 280 RFNGQPAAGVGIRLASGANALDTATAVRARLDEMKRYFPEGVQYVVPYDTTPFVKISIES 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ +I + ++ T L++ G ++ ++ G+V Sbjct: 340 VVMTLIEAVALVFLVMYLFLQNFRATLIPTMAIPVVLLGTFGLMAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + S + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATKRSMDQITSALVGIGLVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG R F+IT+ ++ +S+ AI A+ I K + F Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVLVAIVFTPALCASI-LKPVEKGHEHGEGGLFGRFFHW 518 Query: 538 IAIQFMR 544 ++F R Sbjct: 519 FNVKFER 525 Score = 80.1 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 79/240 (32%), Gaps = 6/240 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 V L V + + + +++ + ++ Sbjct: 255 QQGGEVRLKDVARIEIGAENYGTVARFNGQPAAGVGIRLASGANALDTATAVRARLDEMK 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I ++ +I + + + +++ + + L + + Sbjct: 315 RYFPEGVQYVVPYDTTPFVKISIESVVMTLIEAVALVFLVMYLFLQNFRATLIPTMAIPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T G A FG N + ++ IG V+D +VV + + + + ++ Sbjct: 375 VLLGTFGLMAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATK 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 +S+++ V + +PMA +GGS F+I + + ++ +I + Sbjct: 433 RSMDQITSALVGIGLVLSAVFVPMAFFGGSTGVIYRQFSITIVSAMALSVLVAIVFTPAL 492 Score = 60.1 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 77/267 (28%), Gaps = 13/267 (4%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + A V S + + + N L + Sbjct: 782 RMTPEDLDKWYVRNKAGDMVPFSAFATAHWTYGSPRLERFNGQPSMELLGQAAPGLSSGE 841 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V E++ K I + + E + + S + + + + ++ Sbjct: 842 AMQAVEEIMAKLPPGIGYDWSGTSYEERRSGSQAP----ALYAL--SLLVVFLCLAALYE 895 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + + L + L + G+ ++ +L IG S + +++ + + Sbjct: 896 SWSVPFAVMLVVPLGVLGALLAASGRGLSNDVYFQVGLLATIGLSSKNAILIVEFAK--- 952 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805 ++ L + TS+A VLP+A+ G + + G Sbjct: 953 AQMEEGKDLISATLTAVRMRLRPIIMTSLAFGFGVLPLAIATGAGAGSQNAIGTGVLGGT 1012 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +F + I + Sbjct: 1013 IGATLLGLFFVPLFYVVIKRIFPDKPK 1039 >gi|194432772|ref|ZP_03065057.1| acriflavine resistance protein B [Shigella dysenteriae 1012] gi|194419034|gb|EDX35118.1| acriflavine resistance protein B [Shigella dysenteriae 1012] gi|332096991|gb|EGJ01975.1| inner membrane protein [Shigella dysenteriae 155-74] Length = 1049 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELIEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|297182390|gb|ADI18555.1| preprotein translocase subunit secd [uncultured gamma proteobacterium HF4000_23L14] Length = 615 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 166/518 (32%), Positives = 278/518 (53%), Gaps = 34/518 (6%) Query: 32 LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ++ S + +SLGLDLRGG H +LEVD + V+ + Y +ELR+ L+++ + S+ Sbjct: 108 VPQWLSNVGGKAMSLGLDLRGGVHFLLEVDMEAVVSMAIDRYYNELRTVLREDRL-YKSI 166 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 R+ N + +SF K + L + + L + + Sbjct: 167 RKEGNLLVVSFKTENLKTEAKKLIKDELSDLMIVGGSETDLQLSLKISSG---------A 217 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 S A++Q++ +R R++++G++E IQ+ GS RI++QLPG QD +R +++LG A Sbjct: 218 QSAAKSSALKQNIITLRNRVNELGVAEPIIQQQGSERIVVQLPGVQDTARAKEILGAVAT 277 Query: 212 MSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 + F V N + G + + DG L++ V ++G ++ A++ D Sbjct: 278 VEFRLVDEKNDLQTAVQSGKIPVGSKLYKFRDGRPLLLKTSVIVTGENIVDASSGVDNSN 337 Query: 266 HKPVVDISFDEMGARRFFEV------------------TRDNIGKPLAVVLDGRVLTAPV 307 V G T G + + + Sbjct: 338 SPMVSITLDSAGGRTMLETTKEFLHHRMAVVYIENKVETIVEDGNIVKKRSKTQDIINAA 397 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 Q S + QI+G + A LA +LRAGSL + I+EER +G LG+D+I KG + Sbjct: 398 TIQGNFSNRFQITGIDSAREARNLALLLRAGSLSAPIEIIEERTIGPSLGADNIQKGLLS 457 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427 ++ G L++LFM Y +GLVA+ ++ LN+++ +++LS+L ATLTLP IAGIVL +G+A Sbjct: 458 VLVGFALVLLFMGWRYRVFGLVANLALTLNLVIIVSILSMLQATLTLPGIAGIVLTVGMA 517 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ ERI+EE + N+++ ++ G+++A TI D+NIT LIA++VLF FG GAV+G Sbjct: 518 VDANVLIFERIKEELQLNKNIQKAISGGYAKALLTIADANITTLIASLVLFSFGTGAVKG 577 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 FA+T+ + I+ SMFTAI + RA++ I +K++ + I Sbjct: 578 FAVTLSIGIITSMFTAIVVSRAVINLIYGGRKVEELAI 615 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 104/254 (40%), Gaps = 4/254 (1%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 F V V+ V N+ + N + G A+ Sbjct: 360 FLHHRMAVVYIENKVETIVEDGNIVKKRSKTQDIINAATIQGNFSNRFQITGIDSAREAR 419 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + + + I +GP + + I+KG++ V++ +L+++ R++ F L Sbjct: 420 NLALLLRAGSLSAPIEIIEERTIGPSLGADNIQKGLLSVLVGFALVLLFMGWRYRV-FGL 478 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A L L++ + ++ L +A ++ +G +V+ V++++R+++ ++L Sbjct: 479 VANLALTLNLVIIVSILSMLQATLTLPGIAGIVLTVGMAVDANVLIFERIKEELQLNK-- 536 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 + + I + L ++ I+ L + +G + FA+ ++ GI+ + ++I Sbjct: 537 -NIQKAISGGYAKALLTIADANITTLIASLVLFSFGTGAVKGFAVTLSIGIITSMFTAIV 595 Query: 815 IAAPILLFIYDWRA 828 ++ ++ IY R Sbjct: 596 VSRAVINLIYGGRK 609 >gi|30061962|ref|NP_836133.1| acriflavine resistance protein [Shigella flexneri 2a str. 2457T] gi|30040206|gb|AAP15939.1| acriflavine resistance protein [Shigella flexneri 2a str. 2457T] gi|281599801|gb|ADA72785.1| Acriflavine resistance protein [Shigella flexneri 2002017] gi|313646908|gb|EFS11365.1| acriflavine resistance protein B [Shigella flexneri 2a str. 2457T] gi|332761495|gb|EGJ91777.1| inner membrane protein [Shigella flexneri 2747-71] gi|332763764|gb|EGJ94002.1| inner membrane protein [Shigella flexneri K-671] gi|332768387|gb|EGJ98571.1| acrB RND-type permease [Shigella flexneri 2930-71] gi|333021881|gb|EGK41129.1| inner membrane protein [Shigella flexneri K-304] Length = 1049 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 179/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 ++ D + + V I+ + + + +G Sbjct: 516 LNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSTPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|161506051|ref|YP_001573163.1| hypothetical protein SARI_04238 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867398|gb|ABX24021.1| hypothetical protein SARI_04238 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1037 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 74/684 (10%), Positives = 186/684 (27%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L + Q + ++P+ P Sbjct: 7 RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + + ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + + S + D I Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFISDNPNTTQDDISDYVASNIKDSISRLNGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + L + T + + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVISQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KDPQEFGKVTLRVNTNGSVVHLKDVARIELGGENYNVV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + T A L+ + S Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMQVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + ++ S + + S+ + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529 FGG R F+IT+ ++ +S+ A+ + A+ + KK Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTK 518 Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + R + + ++ ++ L + +G + Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 ++++ + ++ + Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 95/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + G + L V N V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNTNGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T ++ ++ P + I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMQVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++S R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 60.1 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 +L G+ ++ +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGRG--LIEATLEASRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G++ A +I Sbjct: 973 PILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATLLAI 1018 >gi|58582105|ref|YP_201121.1| preprotein translocase subunit SecD [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624007|ref|YP_451379.1| preprotein translocase subunit SecD [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58426699|gb|AAW75736.1| protein-export membrane protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367947|dbj|BAE69105.1| protein-export membrane protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 614 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 144/520 (27%), Positives = 253/520 (48%), Gaps = 39/520 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDL GG H ++VD+ + L +++++R+ L+ I Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I +S + + + + L + + I++ Sbjct: 163 AYRSVERRADNSIQVSLGEGADADAARVTLAK------------AQPTLTYDVSGQNIAV 210 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + Q+ S AIEQ++ +R R++ +G+SE TIQR G RI+++LPG QD + ++L Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + F V+ N++ G G L+ + ++G + A+ Sbjct: 271 IGATASLEFRAVVDGNAEDAVRSGNIPPEAKVYRVRDTGAPVLLNKRALVTGDQMVSASV 330 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302 + D V + G R F T + + + Sbjct: 331 SNDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 P A GK + A LA +L++GSL ++ VEE +G LG++++ Sbjct: 391 EALPATRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A+V + ++F + Y +G + ++ N+++ +A++SL GAT+TLP AG+ L Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG Sbjct: 511 SVGLSVDANVLINERIREELRLGVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G ++GFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + G + V+ + + E + + +Q Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALPATRIAGVFGKNFQTT 409 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 K + ++GP + E + +G+ V+ S + L++ I Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F L+ ++ + +LFG L A + +G SV+ V++ +R+R+ Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++L + + I + G + ++ I + + +G + FA+ M GI Sbjct: 529 ELRL---GVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585 Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833 + ++I ++ + + IY R K + Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612 Score = 41.2 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 30/121 (24%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59 + W L ++ + L ALPN + + Sbjct: 2 LEFPRWKYFLILLVLAVSALYALPNIYQKDPS---------------------VQITASR 40 Query: 60 -VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 DD + + + LK GI ++ + + + + + + D + Sbjct: 41 GAQLDDALRSRID-------ADLKAAGITPKAVTKEGDSLMVRLPSLQAQTRANDVLRQQ 93 Query: 119 L 119 L Sbjct: 94 L 94 >gi|218553028|ref|YP_002385941.1| multidrug efflux system protein [Escherichia coli IAI1] gi|218359796|emb|CAQ97337.1| multidrug efflux system protein [Escherichia coli IAI1] Length = 1049 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 179/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I + Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGVENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 83/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V ++ DI + + L +++ + K+ P Sbjct: 264 DVAKIELGVENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|26246475|ref|NP_752514.1| acriflavin resistance protein B [Escherichia coli CFT073] gi|215485542|ref|YP_002327973.1| multidrug efflux system protein [Escherichia coli O127:H6 str. E2348/69] gi|218688325|ref|YP_002396537.1| multidrug efflux system protein [Escherichia coli ED1a] gi|218703745|ref|YP_002411264.1| multidrug efflux system protein [Escherichia coli UMN026] gi|227884526|ref|ZP_04002331.1| acridine efflux pump [Escherichia coli 83972] gi|293403582|ref|ZP_06647673.1| multidrug efflux protein [Escherichia coli FVEC1412] gi|298379192|ref|ZP_06989073.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli FVEC1302] gi|300900536|ref|ZP_07118703.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 198-1] gi|300935760|ref|ZP_07150725.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 21-1] gi|300987937|ref|ZP_07178453.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 45-1] gi|301049671|ref|ZP_07196619.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 185-1] gi|306813071|ref|ZP_07447264.1| multidrug efflux system protein [Escherichia coli NC101] gi|312964473|ref|ZP_07778767.1| inner membrane protein [Escherichia coli 2362-75] gi|331661843|ref|ZP_08362766.1| acriflavine resistance protein B [Escherichia coli TA143] gi|331672005|ref|ZP_08372801.1| acriflavine resistance protein B [Escherichia coli TA280] gi|26106873|gb|AAN79058.1|AE016756_241 Acriflavine resistance protein B [Escherichia coli CFT073] gi|215263614|emb|CAS07945.1| multidrug efflux system protein [Escherichia coli O127:H6 str. E2348/69] gi|218425889|emb|CAR06695.1| multidrug efflux system protein [Escherichia coli ED1a] gi|218430842|emb|CAR11716.1| multidrug efflux system protein [Escherichia coli UMN026] gi|227838612|gb|EEJ49078.1| acridine efflux pump [Escherichia coli 83972] gi|291429435|gb|EFF02455.1| multidrug efflux protein [Escherichia coli FVEC1412] gi|298280305|gb|EFI21809.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli FVEC1302] gi|300298564|gb|EFJ54949.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 185-1] gi|300356017|gb|EFJ71887.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 198-1] gi|300407607|gb|EFJ91145.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 45-1] gi|300459060|gb|EFK22553.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 21-1] gi|305853834|gb|EFM54273.1| multidrug efflux system protein [Escherichia coli NC101] gi|307552368|gb|ADN45143.1| acridine efflux pump [Escherichia coli ABU 83972] gi|312290950|gb|EFR18826.1| inner membrane protein [Escherichia coli 2362-75] gi|315294246|gb|EFU53597.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 153-1] gi|315299539|gb|EFU58787.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 16-3] gi|320197062|gb|EFW71681.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli WV_060327] gi|323191128|gb|EFZ76392.1| inner membrane protein [Escherichia coli RN587/1] gi|324010043|gb|EGB79262.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 57-2] gi|331060265|gb|EGI32229.1| acriflavine resistance protein B [Escherichia coli TA143] gi|331070994|gb|EGI42353.1| acriflavine resistance protein B [Escherichia coli TA280] Length = 1049 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|325141837|gb|EGC64282.1| protein-export membrane protein SecF [Neisseria meningitidis 961-5945] Length = 311 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 168/303 (55%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + D Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTRGLNFSVEFTGGTVMEVQYQQGAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R L++L+IGD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + AI ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVAIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + ++ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298 Query: 830 NAR 832 A+ Sbjct: 299 IAK 301 >gi|300717144|ref|YP_003741947.1| Acriflavine resistance protein B [Erwinia billingiae Eb661] gi|299062980|emb|CAX60100.1| Acriflavine resistance protein B [Erwinia billingiae Eb661] Length = 1043 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 73/685 (10%), Positives = 189/685 (27%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G + L + ++++P P + Sbjct: 8 RPIFAWVLAIIVMLAGGISIL-----KLPVEQYPDVAPTAVQ---------VRATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ S L + ++TLSF + + +V LQ Sbjct: 54 ATTLQNSVTQVIEQNMSGLDGLMYMSSTSDSSGTLQLTLSFQNGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + + ++ D + + + D I Sbjct: 114 ATPLLPQEVQQQGITVRKSSSVFFLVPGFVDDSGKMSMEDIADYVAANLKDPISRINGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DTTRFGSQ-YAMRVWLDPNKLNNYQLTPVDVINMIETQNAQVAAGQLGGAPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + I + Sbjct: 233 SIIAQTRLT-------------SPEEFGNILLKVNSDGSQVRLHDVSRIERGGENYNFVV 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T + L+ + S Sbjct: 280 KINGKPASALGIQLATGANALDTAKAIRAQIDELKPYFPQGLRVVYPYDTTPFISISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L++ G ++ ++ G+V Sbjct: 340 VVKTLLEAIVLVFLVMYLFLQSFRATLIPTIAVPVVLLGTFGILNVFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERIMAEEGLKPKAATRKSMEQIQGALVGIALVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++ +S+ A+ + A+ + I + + Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVLVALILTPALCVTILKPVKPGTHGQQRGLFGWFNRKF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 +A R+ + V +++ + ++ + + +G + L Sbjct: 520 DQSTDHYTHSVARMLQRSGRYLVIYAVIVAGMAVLFVRLPTSFLPSEDQGVLATQALLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ L+ + +S + + E V G +K Sbjct: 580 GATQERTQAVLDQVNDYYLSDEKNNVENVLTVNGFGFAGRGQNVGIAFIGLKDWSQRGGD 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + + K +++ +V Sbjct: 640 ENKVDGIVSRAAKTFSKIMDGNVVA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 84/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + + L +++ + + ++ Sbjct: 258 SQVRLHDVSRIERGGENYNFVVKINGKPASALGIQLATGANALDTAKAIRAQIDELKPYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705 P I + + ++ + + + + +++ + L + + + Sbjct: 318 PQGLRVVYPYDTTPFISISIHEVVKTLLEAIVLVFLVMYLFLQSFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G +FG N + ++ IG V+D +VV + + + + + KS+ Sbjct: 378 GTFGILNVFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERIMAEEGLKPKAATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA +GGS F+I + + ++ ++ + + + Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCVT 495 Query: 823 IYD 825 I Sbjct: 496 ILK 498 Score = 60.9 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 68/192 (35%), Gaps = 7/192 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G E + L + + G + + IS I + + + Sbjct: 828 GQPAEGKSSGEAMALMQQLAGQLPSGIGYDWTGMSYQERMSGDQAPALYAISLIVVFLCL 887 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L L G+ ++ V +LT IG + + +++ + Sbjct: 888 AALYESWAIPFSVMLVVPLGVFGALVATLLRGLNNDVYFVVGLLTTIGLAAKNAILIVEF 947 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 R +++ + ++ L + TS+A + VLP+A+ G + Sbjct: 948 ARDQIEIEGKG--VVEATLEAARMRLRPILMTSLAFILGVLPLALSSGAGSGAQNAVGTG 1005 Query: 801 MAFGIVVAASSS 812 + G+V A + Sbjct: 1006 VIGGMVAATLLA 1017 >gi|284920271|emb|CBG33330.1| acriflavin resistance protein B [Escherichia coli 042] Length = 1049 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGEHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQRVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|332760755|gb|EGJ91043.1| inner membrane protein [Shigella flexneri 4343-70] gi|333008083|gb|EGK27559.1| inner membrane protein [Shigella flexneri K-218] Length = 1049 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 179/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 ++ D + + V I+ + + + +G Sbjct: 516 LNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSTPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|90419075|ref|ZP_01226986.1| efflux protein [Aurantimonas manganoxydans SI85-9A1] gi|90337155|gb|EAS50860.1| efflux protein [Aurantimonas manganoxydans SI85-9A1] Length = 1054 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 76/685 (11%), Positives = 178/685 (25%), Gaps = 46/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I GLL ++++P +P + + Sbjct: 9 RPIFAAVISILITLGGLLSI-----SALPIEQYPQLVPP-------------QVQVRASY 50 Query: 63 DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + + + + + IT++FA + V Sbjct: 51 PGASAETIAQTVSAPIEQQINGVEDMLYMQSTNSSTGTATITVTFASGTDPDQATINVNN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q N+ L ++ + + + + + + A S + +D++ Sbjct: 111 RVQQANASLPEQVQRLGVTVAKQNSSILAVLTMSSEDPRYDATYVSNYALLNVLDELKRL 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + P L T ++ N FG Sbjct: 171 PGIGEAQLFGARNYSMRIWLRPDALASYGLTPGDVATAVRDQNAQFAAGQFGAPPTNTDL 230 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y V + P I + + Sbjct: 231 AFTYSVTTAGRL-------------PDAEAFENIILRSDENGSSLLLKDVARVELGAQDY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T+ L + Sbjct: 278 GFNATYNGTPTVPIGIYLQPGANALDTLSGVRTRMEELSGSFPDGISFAIPYDTTKFIEA 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + L+ ++ +++I T +L LG ++ L ++ Sbjct: 338 SIEEVIMTFIEAMALVFVVVFIFLQSFRATLIPMLAVPVSIIGTFGVLLALGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + + + + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEGLNAKDATAKAMTEVAGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINP 527 + F G G R FA+T+ +S++IS A+++ A+ + + + + Sbjct: 458 VAFLGGLAGTMYRQFAVTIAVSVVISGIVALTLTPALCGLLLKQGHSEPWAPFRWFNTGF 517 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 +A RA V + + G + +G + Sbjct: 518 DKLTNAYGAGVAFIMRRAVVALVLFAGIVGGSYYFFQTIPGSLVPDEDQGVNFAIAILPP 577 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 L+ +E + F + +K P Sbjct: 578 AASLARTTEVMEQVSANVREHPAVADVVAFAGFDLLAGTQKSSSGVAFVTLKDWSEREDP 637 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 +N ++ + ++ Sbjct: 638 SLDARNLTGPIMGMNAGIQDGMVLA 662 Score = 75.9 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 77/188 (40%), Gaps = 8/188 (4%) Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 +E + + + + +T E+I I + + + + I++ + L Sbjct: 312 MEELSGSFPDGISFAIPYDTTKFIEASIEEVIMTFIEAMALVFVVVFIFLQ---SFRATL 368 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 + + + I T G G NL + ++ IG V+D +VV + + + T Sbjct: 369 IPMLAVPVSIIGTFGVLLALGFSINLLTLFGLVLAIGIVVDDAIVVLENV--ERIMTTEG 426 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASS 811 ++ +D K++ E G + + +P+A G G++ FA+ +A +V++ Sbjct: 427 LNAKDATAKAMTEVAGPVIAIVLVLCAVFIPVAFLGGLAGTMYRQFAVTIAVSVVISGIV 486 Query: 812 SIFIAAPI 819 ++ + + Sbjct: 487 ALTLTPAL 494 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 64/168 (38%), Gaps = 7/168 (4%) Query: 668 KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 G+ + + + + + ++ +W + + + + L L G++ ++ + Sbjct: 869 TGLAAIGFGILMVFLILSAQYERWSLPIAVLLAVPFAMFGALLAIWLRGLDNDVYFQIGL 928 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 +TL+G + + +++ + + +S D + V TS+A + V+P+ Sbjct: 929 VTLVGLAAKNAILIVEFA---VLKREEGLSAFDAALQGAKLRFRPIVMTSLAFILGVVPL 985 Query: 787 AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 A+ G + S + G++ A +IF + + Sbjct: 986 AISTGAGSASRHSIGTGVIGGMLAATFVAIFFIPLFYKLLARKQPSRG 1033 >gi|45442442|ref|NP_993981.1| aminoglycoside/multidrug efflux system [Yersinia pestis biovar Microtus str. 91001] gi|162421005|ref|YP_001607186.1| aminoglycoside/multidrug efflux system [Yersinia pestis Angola] gi|45437307|gb|AAS62858.1| multidrug efflux protein [Yersinia pestis biovar Microtus str. 91001] gi|162353820|gb|ABX87768.1| acriflavine resistance protein D [Yersinia pestis Angola] Length = 1085 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 69/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 50 RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 91 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S +TL+F +V Sbjct: 92 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASVTLTFQAGTNPNEAMQQVQN 151 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L D ++ + + + ++++ + S + D + Sbjct: 152 QLQSAIKRLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDISDYVASNLQDPLSRI 211 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT+ + N G D+ Sbjct: 212 EGVGSVDAFGSQ-YAMRIWLDPNKLTNYQLTTSDIVSAIQSQNTQVAVGQLGGTPAVDNQ 270 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 271 ALNATINAQSQL-------------QTPEEFREITLRVNQDGSLVTLGDVAKIELGSEKY 317 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + A L + Sbjct: 318 DYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPHGLEAKIAYETTPFVQA 377 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 378 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGTFAVLSAFGFSINTLTM 437 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + + + + + Sbjct: 438 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALIGIALVLSAVFIP 497 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + AM + +K I Sbjct: 498 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATL-----LKPIAPGHHHAKRG 552 Query: 534 IPDCIAIQFMRARFWG 549 F R Sbjct: 553 FFGWFNRMFDRNSHRY 568 Score = 84.7 bits (207), Expect = 7e-14, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + + ++ ++ P Sbjct: 302 VTLGDVAKIELGSEKYDYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPH 361 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 362 GLEAKIAYETTPFVQASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGT 421 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + + R+ KS+ + Sbjct: 422 FAVLSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 479 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + ++ +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 480 IQGALIGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATLL 539 Query: 825 D 825 Sbjct: 540 K 540 Score = 78.6 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 895 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 954 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ + L Sbjct: 955 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNNRGKDLVEATLEASRQRL 1011 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 1012 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1071 >gi|52425619|ref|YP_088756.1| preprotein translocase subunit SecF [Mannheimia succiniciproducens MBEL55E] gi|52307671|gb|AAU38171.1| SecF protein [Mannheimia succiniciproducens MBEL55E] Length = 322 Score = 201 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 153/301 (50%), Gaps = 5/301 (1%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + FM+ R +G SI+ S+ +FT G N+G+DF GG+ + ++ Sbjct: 11 HEYKGIGLPFSLVHFMKYRKFGYLFSIIVIALSLFSIFTKGFNWGLDFTGGVIIDTHFSQ 70 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL VRS L++ I Q + +RL D+ + +T + Sbjct: 71 PADLEQVRSTLKTGGIESALVQTTGSANDVAIRLPASASDANIGNNIKN----MMTSLDK 126 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 I++ E VGP + EL + I + + I +L Y+ +RF+W LG I L D+ T Sbjct: 127 DIQIRSVEFVGPNVGEELTQGAIYATLATLILLLAYVGMRFEWRLGLGGILGLAHDVIVT 186 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G F+ IE +LT VAA+LT++GYS+ND +VV+DR+R+N + +S ++I+ S+ + Sbjct: 187 IGLFSFLQIEIDLTFVAAILTVVGYSLNDSIVVFDRVRENFRKI-RRLSSEEVINISLTQ 245 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS+ V + +GG I SF++ + GI SSIF+A + R Sbjct: 246 TLSRTLMTSVTTLFVVFSLLFFGGPSIYSFSLALLIGIGFGTYSSIFVAIALAFDFGLDR 305 Query: 828 A 828 Sbjct: 306 E 306 >gi|88799561|ref|ZP_01115137.1| protein-export membrane protein SecF [Reinekea sp. MED297] gi|88777646|gb|EAR08845.1| protein-export membrane protein SecF [Reinekea sp. MED297] Length = 315 Score = 201 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 161/284 (56%), Gaps = 5/284 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM R V S++ + S+ L GLN+G+DF GG Q+ + +P D+ +RS L+ Sbjct: 7 FDFMGKRRLAVAFSVILLLVSVVSLGVRGLNFGLDFTGGAQIELGFQQPADVEAIRSQLQ 66 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 D+ Q F + L+R+Q + E++ ++ E VGP Sbjct: 67 DAGYRDVDVQYFGTNTDVLIRMQ----EDNNPQLGEEVIALVQETRDDEIQLRRNEYVGP 122 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ EL G +G++++ ++IYI RF++ FA+GA+ L D+ LGFF+L + F+ Sbjct: 123 QVGEELANNGGIGMLVALALVMIYIAFRFQFKFAVGAVAALAHDVIIVLGFFSLTQMAFD 182 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AAVL +IGYS+ND +VV DR+R++ + LI+ S+ +TLGR++ TS+ Sbjct: 183 LTVLAAVLAVIGYSLNDTIVVSDRIRESFRTI-RRDDTEYLINISLTQTLGRTIITSLTT 241 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +L +AV+GG +I SFAI + G+ + SSI++AA IL+ + Sbjct: 242 LLVLLALAVFGGELIFSFAIALIVGVAIGTYSSIYVAANILMLM 285 >gi|324016738|gb|EGB85957.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 117-3] Length = 1049 Score = 201 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|225692171|gb|ACO06752.1| EmhB [Pseudomonas fluorescens] Length = 1054 Score = 201 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 68/692 (9%), Positives = 182/692 (26%), Gaps = 44/692 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L L + ++++PS P + Sbjct: 8 RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T +++ + S I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKSVRNFLMVIGVVSRDGSMTREDLSNYIVSNMQDPISRTAGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T +S N G Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNNFNLTPVDVSTAISAQNVQIASGQLGGLPAMPGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++ Sbjct: 233 TIIGKTRL-------------QTAEQFKAILLKVNPDGSQVRVGDVADVALGGENYSINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L+ + S Sbjct: 280 QFNGAPASGLAVRLATGANALDTAKALRKTVDDLKPFFPQGLEVVFPYDTTPVVSESIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+F+ + + ++ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVETLVEAVALVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG + F+IT+ ++ +S+ A+ A+ + + + Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVMVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRT 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + + + I+ + +G + V Sbjct: 520 FDRGVRSYERGVGNMLKHKAPYLLAYIIIVVGMVWLFTRIPTAFLPEEDQGVLFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++ ++ + GE + + + G + A + + + Sbjct: 580 AGSSAERTQVVVDKMREFLLRPGKDGGEGDGVASVFTVTGFNFAGRGQSSGLAFIMLKPW 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 N+ +++ ++ + Sbjct: 640 EERNADNSVFKIAGRAQQHFFTFRDAMVFAFA 671 Score = 74.3 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V + I+ Q + L +++ + L + Sbjct: 258 SQVRVGDVADVALGGENYSINAQFNGAPASGLAVRLATGANALDTAKALRKTVDDLKPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I+ + ++ + + + +++ + + + T+ + + Sbjct: 318 PQGLEVVFPYDTTPVVSESIKGVVETLVEAVALVFLVMFLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVMVALIFTPAL 492 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 66/162 (40%), Gaps = 7/162 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 +S + + + + ++ W + + + L I L +L G+ ++ +LT IG Sbjct: 881 ALSLLMVFLCLAALYESWSIPIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGL 940 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 + + +++ + ++ L+ + + ++ L + TS+A + V+P+A+ Sbjct: 941 AAKNAILIVEFAKE---LHEQGRTLVEAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGA 997 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G + + G++ A +IF + + + Sbjct: 998 GSGSQHAIGTGVIGGMLTATILAIFWVPLFFVTVSSIGRRKN 1039 >gi|16272200|ref|NP_438410.1| preprotein translocase subunit SecD [Haemophilus influenzae Rd KW20] gi|148827379|ref|YP_001292132.1| preprotein translocase subunit SecD [Haemophilus influenzae PittGG] gi|260580876|ref|ZP_05848701.1| protein-export membrane protein SecD [Haemophilus influenzae RdAW] gi|1173414|sp|P44591|SECD_HAEIN RecName: Full=Protein-export membrane protein secD gi|1573205|gb|AAC21908.1| protein-export membrane protein (secD) [Haemophilus influenzae Rd KW20] gi|148718621|gb|ABQ99748.1| protein export protein SecD [Haemophilus influenzae PittGG] gi|260092499|gb|EEW76437.1| protein-export membrane protein SecD [Haemophilus influenzae RdAW] Length = 616 Score = 201 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + S N + GLDLRGG ++EVD + + + D LR L+KE I +++ Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNATLVKRQEQLQDSLRGELRKEKIQYTAIK 169 Query: 93 QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + ++ A+ + + + I++ LS Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 +++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278 Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V N + D G+ + + + G H+ +++ D + Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 P V ++ D G + T+ KP+A + Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q QI+G +I A L+ +L++G+L + IVEER +G LG+ ++ +G A Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GLV ++ FM+ Y +G++A F++ +N++L + L+S+L ATL++P IAGIVL +G++ Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ ERI+EE R +S+ +++ G++ A+++IFD+N+T ++ ++L+ G G ++G Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 578 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 FAIT+ L + ISMFTAI+ RA++ + K++K + Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +GI + +A++ ++ +K F + A L+++I +G ++ Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G SV+ V++++R+++ ++ S + I++ N Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 556 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G I FAI ++ G+ ++ ++I ++ +Y + Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613 Score = 40.4 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 26/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ I IG+L +LPN + + G+ Sbjct: 4 RYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQI----------------SGTR------ 41 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + L D L++ + S+ I F ++ + DK+ L Sbjct: 42 GQEANTSVLGQVQDVLKT----NNLPTKSIVLENGSILARFTNTDDQLLAKDKIAERL 95 >gi|110640723|ref|YP_668451.1| acriflavine resistance protein B [Escherichia coli 536] gi|191173694|ref|ZP_03035218.1| acriflavine resistance protein B [Escherichia coli F11] gi|300997174|ref|ZP_07181670.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 200-1] gi|110342315|gb|ABG68552.1| acriflavine resistance protein B [Escherichia coli 536] gi|190906052|gb|EDV65667.1| acriflavine resistance protein B [Escherichia coli F11] gi|222355827|gb|ACM48571.1| acriflavine resistance protein B [Escherichia coli] gi|300304309|gb|EFJ58829.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 200-1] gi|324010633|gb|EGB79852.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 60-1] Length = 1049 Score = 201 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKNWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|237732455|ref|ZP_04562936.1| aminoglycoside/multidrug efflux system [Citrobacter sp. 30_2] gi|226907994|gb|EEH93912.1| aminoglycoside/multidrug efflux system [Citrobacter sp. 30_2] Length = 1037 Score = 201 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 75/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATVTLSFVAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPDEFRAITLRVNQDGSEVKLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T L V Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATATLVINRLNELSQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEHHGQTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L ++ +G V Sbjct: 516 NRMFNRNAERYEKGVARILHRSLRWILIYGLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEEVEKYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ + Sbjct: 636 RDTTTGTSFAIIERATKAFNKIKEARVFA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++++ P Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATATLVINRLNELSQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 64/186 (34%), Gaps = 8/186 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E L + IS + + + + ++ W + + L + L Sbjct: 853 FGLEWTAMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALL 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + + D + + L Sbjct: 913 ATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNEKGHDLLDATLHACRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPM + G + + G++ A +I+ + + Sbjct: 970 RPILMTSLAFIFGVLPMTISSGAGSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRR 1029 Query: 827 RAKNAR 832 R Sbjct: 1030 FPLKPR 1035 >gi|300921397|ref|ZP_07137758.1| putative ATP synthase F0, A subunit [Escherichia coli MS 115-1] gi|300411709|gb|EFJ95019.1| putative ATP synthase F0, A subunit [Escherichia coli MS 115-1] gi|323159317|gb|EFZ45302.1| inner membrane domain protein [Escherichia coli E128010] Length = 666 Score = 201 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 >gi|119476394|ref|ZP_01616745.1| protein-export membrane protein SecD [marine gamma proteobacterium HTCC2143] gi|119450258|gb|EAW31493.1| protein-export membrane protein SecD [marine gamma proteobacterium HTCC2143] Length = 622 Score = 201 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 165/537 (30%), Positives = 276/537 (51%), Gaps = 42/537 (7%) Query: 14 ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73 I + L PN+L + LGLDL GG H +LEVD + + ++ Y Sbjct: 103 IVALNLASTTPNWLAD---------FGAQGMKLGLDLSGGVHFLLEVDTNSAIAKRMEFY 153 Query: 74 SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133 + ++ L+++ I F + I F +E KV + + Sbjct: 154 TSGIKKSLREDKIRGFIRLEEDGSIRGKFKTEELREQANSKVRTEFS--------ELVRQ 205 Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193 + + + + +S+ I ++ ++A++Q++ +R R++++G+SE +QR G +RI+++L Sbjct: 206 SVDDDGDFYLYMTISEAKIKEIENYAVDQNLTTLRNRVNELGVSEPLVQRQGRNRIVVEL 265 Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-DSDGNQYLVEDKVEISGI 252 PG QD +R ++++G TA M F ++ F G +E + I+G Sbjct: 266 PGVQDTTRAKRIIGKTANMEFRLEAKYDALASAKEEFEFREAGRRGGSAFLERDIVITGE 325 Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP------------------- 293 + A+A FD +T +P V+I+ D G VTR NI + Sbjct: 326 RVASASAGFDSQTSQPQVNITLDSEGGAMMHRVTRHNIKRGLGVLFIERKSRTRYETNAA 385 Query: 294 -----LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 + V D + + + Q +I+G A LA +LRAG+L L V+ Sbjct: 386 GEEVVIKVPYDEKRIISLATIQDALGVSFRITGLGNPAEAAELALLLRAGALAAPLEFVQ 445 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG+++I G ++ GL L+ +FM+V Y +G+VA + +N++L +A +S+L Sbjct: 446 ERTIGPSLGAENIELGIMSVQIGLALVAVFMMVYYRLFGVVAMLGLSINLVLLIAAMSIL 505 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 ATLTLP IAGIVL +G+AVD+N+L+ RIREE R S +++ G+ RA+ TI D+NI Sbjct: 506 SATLTLPGIAGIVLTVGMAVDANVLIFARIREELRAGLSPQQAINAGYDRAFVTIMDANI 565 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T L+ ++L+ G G VRGFA+T+ L I+ SMFTAI RA++ I +K++ + I Sbjct: 566 TTLLVALILYAVGAGPVRGFAVTLSLGIITSMFTAIVGTRALINMIHGGRKIQKLSI 622 Score = 150 bits (379), Expect = 6e-34, Method: Composition-based stats. Identities = 32/280 (11%), Positives = 100/280 (35%), Gaps = 5/280 (1%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 +I ++ + G + + + + + + D Sbjct: 344 NITLDSEGGAMMHRVTRHNIKRGLGVLFIERKSRTRYETNAAGEEVVIKVPYDEKRIISL 403 Query: 613 GEKNFLVRLQYQPGD-SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + + ++ + + + +GP + E I GI+ Sbjct: 404 ATIQDALGVSFRITGLGNPAEAAELALLLRAGALAAPLEFVQERTIGPSLGAENIELGIM 463 Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731 V I + +++ + ++ F + A+ L +++ + ++ L +A ++ +G Sbjct: 464 SVQIGLALVAVFMMVYYRL-FGVVAMLGLSINLVLLIAAMSILSATLTLPGIAGIVLTVG 522 Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791 +V+ V+++ R+R+ ++ +S + I+ + + ++ + L + G Sbjct: 523 MAVDANVLIFARIREELRA---GLSPQQAINAGYDRAFVTIMDANITTLLVALILYAVGA 579 Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + FA+ ++ GI+ + ++I ++ I+ R Sbjct: 580 GPVRGFAVTLSLGIITSMFTAIVGTRALINMIHGGRKIQK 619 Score = 41.2 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 13/43 (30%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44 + W IL ++ +G A PN + I Sbjct: 4 QYPLWKYILILLVVVVGFFYAAPNLYSPDPAVQLSGESSATVI 46 >gi|315924145|ref|ZP_07920371.1| protein-export membrane protein SecDF [Pseudoramibacter alactolyticus ATCC 23263] gi|315622547|gb|EFV02502.1| protein-export membrane protein SecDF [Pseudoramibacter alactolyticus ATCC 23263] Length = 330 Score = 201 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 75/307 (24%), Positives = 137/307 (44%), Gaps = 5/307 (1%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + F+ + IS++ I ++ L GLN+GIDF GG + V Sbjct: 3 FKEAVMAKEQKQKRILPFIEHTKIWLSISLILVIIAVGALGVRGLNFGIDFAGGTTVTVN 62 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 ++ +RS + D + + + + + Sbjct: 63 LHQAFKTEDIRSITK---TFDKNADITYSGNAKQSAVISTKVSLNNLQQKKLLGDFQKRY 119 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 + + + + RE R I+ + + +L+Y+ IRF+++F L ++ L DI Sbjct: 120 PKVQQKDVSVDRITASVGRETTRNTILASLAAIALILVYVTIRFEFFFGLASVIALFHDI 179 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLID 762 +G +ALF I+ N +AA+LT++GYS+ND +VV+DR+R+N L+D Sbjct: 180 IVVIGVYALFQIQVNSPFIAAILTILGYSINDTIVVFDRIRENENEMGMANIAEMTKLVD 239 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SI +TL RS+ T ++++ + ++ I +FA+P+ GI SSIF+A+P+ + Sbjct: 240 ASITQTLKRSINTVATTLVAIIALYIFAVDAIRNFAMPLIVGIACGCYSSIFVASPLWVI 299 Query: 823 IYDWRAK 829 K Sbjct: 300 FQKHAKK 306 >gi|225851088|ref|YP_002731322.1| protein-export membrane protein SecD [Persephonella marina EX-H1] gi|225646333|gb|ACO04519.1| protein-export membrane protein SecD [Persephonella marina EX-H1] Length = 512 Score = 201 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 168/537 (31%), Positives = 263/537 (48%), Gaps = 46/537 (8%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 +++ I L I LGLDL+GG +VLEVD D Sbjct: 6 KLKLVVVFAILVASLYFIF-----------------TKPIKLGLDLQGGMSIVLEVDVDH 48 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 +N + ++ LK GI V S + + K +S D + V Sbjct: 49 VINTQYKQLVRDIEKKLKDNGIEVLSGKVVNGKAVVSLLDPTTVNRALKIIKDEFPQVK- 107 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 V T + + L +D++ ++Q++E +R RID+ G I ++ Sbjct: 108 -----------VETENGNLVVQLLPWELDRIKKMTVQQAVETLRNRIDEFGTLNPNIAKM 156 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244 G RIL++LPG DP R + ++G TA++ +V+ K + +G + L Sbjct: 157 GERRILVELPGVVDPERAKSIIGKTAQLELLEVVDTAFSKEELLKKYPDGLPEGTKILEG 216 Query: 245 DKVEISGIHLNGA----------------TANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 + I+G + ++ KP V+ GA F E T Sbjct: 217 PEEHINGQTVKEWFLVKDTPIVTGSMLKDARTTIDQSGKPAVNFELTSEGAEIFGEATAK 276 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 IGK LA+VLD +V++APV+ S QI+GNFT E A LA +LRAG+LP ++I+E Sbjct: 277 MIGKRLAIVLDNKVISAPVVRS-RISSAGQITGNFTPEEAADLAIVLRAGALPAPVHILE 335 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 ER +G LG DSI K A +A LVL+ LFM+ Y G ++ ++ N IL A++ L Sbjct: 336 ERVIGPTLGKDSIEKTVNAGIAALVLVGLFMLWRYAVSGFISIVALIFNGILLWAVMVFL 395 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 TLTLP IAGI+L IG+AVD+N+++ ERI+EE ++ +++ +++ GF RA+ I D+ I Sbjct: 396 DVTLTLPGIAGIILNIGMAVDANVIIFERIKEEMKRGRTLRVAVEEGFKRAWDAILDAQI 455 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 T LIA VLF FG G ++GFA T+ + + S+FTA+ + + + ++ +K Sbjct: 456 TTLIAAFVLFQFGTGPLKGFAATLSIGTITSIFTALFVTKLFLDIVLGGRKSLKYAF 512 Score = 132 bits (330), Expect = 4e-28, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 74/173 (42%), Gaps = 4/173 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 ++GP + ++ I K + I + + + +++ R+ +I LI + Sbjct: 338 VIGPTLGKDSIEKTVNAGIAALVLVGLFMLWRYAVS-GFISIVALIFNGILLWAVMVFLD 396 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + L +A ++ IG +V+ V++++R+++ MK + R +++ + Sbjct: 397 VTLTLPGIAGIILNIGMAVDANVIIFERIKEEMK---RGRTLRVAVEEGFKRAWDAILDA 453 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + I+ + +G + FA ++ G + + +++F+ L + R Sbjct: 454 QITTLIAAFVLFQFGTGPLKGFAATLSIGTITSIFTALFVTKLFLDIVLGGRK 506 >gi|330807999|ref|YP_004352461.1| acriflavine resistance protein B; SecD_SecF Protein export membrane protein, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376107|gb|AEA67457.1| acriflavine resistance protein B; SecD_SecF Protein export membrane protein, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1054 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 66/692 (9%), Positives = 182/692 (26%), Gaps = 44/692 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L L + ++++PS P + Sbjct: 8 RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTSSDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGVVSRDGSMTKDDLANYIVSNLQDPISRTAGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNNFNLTPVDVKNAIAAQNVQISSGQLGGLPALPGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFKAILLKVNPDGSQVRVGDVAEVGLGGENYSVSA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L+ + S Sbjct: 280 QFNGAPASGLAVKLANGANALDTAKALRKTIDDLKPFFPQGVEVVFPYDTTPVVSESIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+F+ + + ++ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVETLVEAVVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 G + F+IT+ ++ +S+ A+ A+ + + + N Sbjct: 460 SGSTGVIYKQFSITIVSAMALSVMVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRN 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + + + ++ + +G + V Sbjct: 520 FDRGVRSYERGVGNMLKHKAPYLLAYVLIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++ ++ + GE + + + G + A + + + Sbjct: 580 AGSSAERTQVVVDKMREFLLRPSKDGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPW 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 N+ +++ ++ + Sbjct: 640 EERNADNSVFKLAARAQQHFFTFRDAMVFAFA 671 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V + +S Q + L +++ + L + Sbjct: 258 SQVRVGDVAEVGLGGENYSVSAQFNGAPASGLAVKLANGANALDTAKALRKTIDDLKPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I+ + ++ + + + + +++ + + + T+ + + Sbjct: 318 PQGVEVVFPYDTTPVVSESIKGVVETLVEAVVLVFLVMFLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA + GS F+I + + ++ ++ + Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMALSVMVALIFTPAL 492 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 66/161 (40%), Gaps = 7/161 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 +S + + + + ++ W + + + L I L +L G+ ++ +LT IG Sbjct: 881 ALSLLMVFLCLAALYESWSIPIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGL 940 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 + + +++ + ++ L+ + + ++ L + TS+A + V+P+A+ Sbjct: 941 AAKNAILIVEFAKE---LHEQGRTLMEAAIEACRMRLRPIIMTSLAFILGVVPLAISTGA 997 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 G + + G++ A +IF + + + Sbjct: 998 GSGSQHAIGTGVIGGMLTATILAIFWVPLFFVTVSSMGRRK 1038 >gi|86749848|ref|YP_486344.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris HaA2] gi|86572876|gb|ABD07433.1| protein translocase subunit secF [Rhodopseudomonas palustris HaA2] Length = 367 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 114/336 (33%), Positives = 193/336 (57%), Gaps = 17/336 (5%) Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550 ++ A+ + ++ + ++ + D F + R Sbjct: 1 MTSTQWILIGLGALVVALTIVSIMGWLPSLRIVP-----------DDTHFDFTQFRRISF 49 Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DLSVVRSNLESLQIGDISFQ 609 IS L SI +I L FTHGLN+GIDFKGG L V A+ D+ +R L L +G++ Q Sbjct: 50 PISALLSIAAITLFFTHGLNFGIDFKGGTLLEVRAHSGAADIPGMRDTLSKLGLGEVQLQ 109 Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669 F G L+R+ QPG AQ ++ V+ + + E+VGP++S EL+ G Sbjct: 110 QFGGPSEVLIRVAEQPGGDAAQQEAVQKVRGAL---GNSVDYRRVEVVGPRVSSELLAYG 166 Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 ++G++++ + +L+Y+W RF+W FALGA+ + DI T+GF ++ ++F+LT++AA+LT+ Sbjct: 167 MLGLMLAILGILVYLWFRFEWQFALGAMIANVHDIVLTIGFMSISQVDFDLTSIAALLTI 226 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 +GYS+ND VV+YDR+R+ ++ Y + L+++SIN TL RS+ T + +++ + ++ Sbjct: 227 LGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLSRSIITHVTVTLALFALLLF 285 Query: 790 GGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824 GG+ I SF M FG ++V +SIFIAAPIL+++ Sbjct: 286 GGNAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 321 >gi|85058626|ref|YP_454328.1| preprotein translocase subunit SecD [Sodalis glossinidius str. 'morsitans'] gi|84779146|dbj|BAE73923.1| protein-export membrane protein SecD [Sodalis glossinidius str. 'morsitans'] Length = 615 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 159/518 (30%), Positives = 278/518 (53%), Gaps = 37/518 (7%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + + + + LGLDLRGG H ++EVD D +N + D LR L+ +GI ++R Sbjct: 110 PAWLAMLGAAPMKLGLDLRGGVHFLMEVDMDTALNKLQEQTMDTLRGDLRDKGIPYATVR 169 Query: 93 QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 +I+N + F D+ ++ S L + ++ + + + L+ Sbjct: 170 KIENYGSEIRFRDAETRDQAI-----------SWLTPRHRDLVINSQGDNALRATLADER 218 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + Q ++++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R +++LG TA Sbjct: 219 LRQARKYSVQQNITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATAT 278 Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + V + G DG ++ +V ++G H+ +T++ + + Sbjct: 279 LELRLVNSAVDQTAAANGRVPGDSEVKATRDGQPVVLYKRVILTGDHITDSTSS-ADEYN 337 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 +P V+IS D G T+DNIGK +A + + Sbjct: 338 RPQVNISLDGTGGTTMSNFTKDNIGKLMATLFVEYKDSGKKDANGRSILVKQEEVINVAT 397 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q+ +I+G A L+ +LRAG+L + IVEE +G LG +I +G A Sbjct: 398 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEESTIGPTLGLQNITQGLEAC 457 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GLV +LFM+V Y K+GL+A ++ +N++L + ++SLL ATLT+P IAGIVL + +A Sbjct: 458 LWGLVASILFMVVWYRKFGLIATMALIVNLVLIIGIMSLLPGATLTMPGIAGIVLTLAVA 517 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+NERI+EE R ++V ++ G+ A+S+I D+N+ LI ++L+ G G+++G Sbjct: 518 VDANVLINERIKEELRNGRTVQQAIHEGYRGAFSSIVDANVATLITAIILYAVGTGSIKG 577 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 FAIT + + SMFTAI RA++ + K++ + I Sbjct: 578 FAITTAIGVATSMFTAIIGTRAIVNLLYGGKRIDKLSI 615 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 80/175 (45%), Gaps = 5/175 (2%) Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 +GP + + I +G+ + +A ++++ + ++ F L A LI+++ +G +L Sbjct: 439 STIGPTLGLQNITQGLEACLWGLVASILFMVVWYR-KFGLIATMALIVNLVLIIGIMSLL 497 Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G + +A ++ + +V+ V++ +R+++ ++ + + I + V Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHEGYRGAFSSIV 554 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++A I+ + + G I FAI A G+ + ++I I+ +Y + Sbjct: 555 DANVATLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYGGKR 609 >gi|301168890|emb|CBW28484.1| SecYEG protein translocase auxillary subunit [Haemophilus influenzae 10810] Length = 615 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 149/515 (28%), Positives = 269/515 (52%), Gaps = 35/515 (6%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + S N + GLDLRGG ++EVD + + + D LR L+KE I +++ Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169 Query: 93 QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152 ++ TL + + + I++ LS + Sbjct: 170 NTEHFGTLITLAVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAAL 218 Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212 ++ AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA + Sbjct: 219 NEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATL 278 Query: 213 SFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267 F V N + D G+ + + + G H+ +++ D + Sbjct: 279 EFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSST 338 Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VIN 309 P V ++ D G + T+ KP+A + Sbjct: 339 PQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVATI 398 Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369 Q QI+G +I A L+ +L++G+L + IVEER +G LG+ ++ +G A + Sbjct: 399 QGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASL 458 Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAV 428 GLV ++ FM+ Y +G++A F++ +N++L + L+S+L ATL++P IAGIVL +G++V Sbjct: 459 WGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSV 518 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 D+N+L+ ERI+EE R +S+ +++ G++ A+++IFD+N+T ++ ++L+ G G ++GF Sbjct: 519 DANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGF 578 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 AIT+ L + ISMFTAI+ RA++ + K++K + Sbjct: 579 AITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 613 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 +GP + + + +GI + +A++ ++ +K F + A L+++I +G ++ Sbjct: 440 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 498 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G ++ +A ++ +G SV+ V++++R+++ ++ S + I++ N Sbjct: 499 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 555 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ + + G I FAI ++ G+ ++ ++I ++ +Y + Sbjct: 556 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 612 >gi|190575902|ref|YP_001973747.1| putative acriflavin resistance protein B [Stenotrophomonas maltophilia K279a] gi|48927366|emb|CAG34257.1| RND protein [Stenotrophomonas maltophilia] gi|190013824|emb|CAQ47462.1| putative acriflavin resistance protein B [Stenotrophomonas maltophilia K279a] Length = 1040 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 80/702 (11%), Positives = 188/702 (26%), Gaps = 42/702 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + +P+ P Sbjct: 8 RPIFAWVIAIIIMLAGGLALF-----KLPVSMYPNVAPPAVE---------ISATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 V + ++ L + ITL+F + +V LQ Sbjct: 54 AKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + + + + A + + + +D++ Sbjct: 114 AMPLLPQEVQRQGINVAKSSSGFLNVIAFVSENGSMDANDIADYVGSNVVDRLSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L + A+++ N G Sbjct: 174 NIQVFG-GKYAMRIWLDPNKLHTYGLSVAEVTAAIKAQNAQVAIGQLGGAPSIKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I + Sbjct: 233 TINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESYDFVT 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T +++ V S Sbjct: 280 RYNGQPASGLAVTLATGANALDTAAGVNAALEDMKSFFPAGLKAEVPYDTTPFVRVSIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L++LG ++ + ++ +V Sbjct: 340 VVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAMLGFSVNMLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + V + F Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G R F+ T+ ++ +S+ AI + A+ +++ K + + Sbjct: 460 SGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLKKGEHHVAHRGLAGRFFNG 519 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 F R S + ++ GI + +GVL R + + Sbjct: 520 FNRGFDR-------TSESYQRGVRGIIHRPWRFMGIVAALFVLMGVLFVRLPSSFLPNED 572 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTIQNTE 655 L + E+ + + ++ V + Sbjct: 573 QGVLMALVQAPVGATQERTLESIAALENHFLQNEKDAVDSVFSVQGFSFAGMGQNAGMAF 632 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 + S G++ + A+A L I F + F AI Sbjct: 633 VKLKDWSERDANNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 82/241 (34%), Gaps = 6/241 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + D + + L +++ + + + P Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVNAALEDMKSFFPAGLKA 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 R I+ + +I + + + + +++ + + L + + + T G Sbjct: 324 EVPYDTTPFVRVSIKGVVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A+ G N+ + A++ IG V+D +VV + + + +S + KS+ + G Sbjct: 384 AMLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V + +PMA GS F+ + + ++ +I + + + Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501 Query: 829 K 829 K Sbjct: 502 K 502 Score = 63.9 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 77/247 (31%), Gaps = 13/247 (5%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + + V S + + N Sbjct: 779 QPFRMVPEDFDLWSVKNDKGEMVPFSAFATKHWDYGSPRLERYNGVSAMEIQGEPAPGVA 838 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 A + ++ K+ T + + L+ +S + + + + Sbjct: 839 SGDAMAEIEQLAKQLPAGFGIEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAA 892 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 ++ W + L I + G+E ++ A+LT +G + + +++ + + Sbjct: 893 MYESWSVPTAVLLAAPLGILGAVLANTFKGLERDIYFQVAMLTTVGLTSKNAILIVEFAK 952 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802 +N+ + I ++ + L V TS+A + V+P+A+ G + + Sbjct: 953 ENL---EKGAGLIESIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVL 1009 Query: 803 FGIVVAA 809 G++V Sbjct: 1010 GGMIVGT 1016 >gi|48927356|emb|CAG34265.1| RND protein [Stenotrophomonas maltophilia] Length = 1040 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 79/702 (11%), Positives = 188/702 (26%), Gaps = 42/702 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + +P+ P Sbjct: 8 RPIFAWVIAIIIMLAGGLALF-----KLPVSMYPNVAPPAVE---------ISATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 V + ++ L + ITL+F + +V LQ Sbjct: 54 AKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + + + + A + + + +D++ Sbjct: 114 AMPLLPQEVQRQGINVAKSSSGFLNVIAFVSENGSMDANDIADYVGSNVVDRLSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L + A+++ N G Sbjct: 174 NIQVFG-GKYAMRIWLDPNKLHTYGLSVAEVTAAIKAQNAQVAIGQLGGAPSVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I + Sbjct: 233 TINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESYDFVT 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T +++ + S Sbjct: 280 RYNGQPASGLAVTLATGANALDTAAGVDAALDDMKSFFPAGLKAEIPYDTTPFVRVSIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L++LG ++ + ++ +V Sbjct: 340 VVQTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAMLGFSVNMLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + V + F Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G R F+ T+ ++ +S+ AI + A+ +++ K + + Sbjct: 460 SGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLKKGEHHVAHRGLAGRFFNG 519 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 F R S + ++ GI + +GVL R + + Sbjct: 520 FNRGFDR-------TSESYQRGVRGIIHRPWRFMGIVAALFVLMGVLFVRLPSSFLPNED 572 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTIQNTE 655 L + E+ + + ++ V + Sbjct: 573 QGVLMALVQAPVGATQERTLESIAALENHFLQNEKDAVDSVFSVQGFSFAGMGQNAGMAF 632 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 + S G++ + A+A L I F + F AI Sbjct: 633 VKLKDWSERDANNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 82/241 (34%), Gaps = 6/241 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + D + + L +++ ++ + P Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVDAALDDMKSFFPAGLKA 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 R I+ + ++ + + + + +++ + + L + + + T G Sbjct: 324 EIPYDTTPFVRVSIKGVVQTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A+ G N+ + A++ IG V+D +VV + + + +S + KS+ + G Sbjct: 384 AMLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V + +PMA GS F+ + + ++ +I + + + Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501 Query: 829 K 829 K Sbjct: 502 K 502 Score = 65.5 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 77/247 (31%), Gaps = 13/247 (5%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + + V S + + N Sbjct: 779 QPFRMVPEDFDLWSVKNDKGEMVPFSAFATKHWDYGSPRLERYNGVSAMEIQGEPAPGVA 838 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 A + ++ K+ T + + L+ +S + + + + Sbjct: 839 SGDAMAEIEQLAKQLPAGFGIEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAA 892 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 ++ W + L I + G+E ++ A+LT +G + + +++ + + Sbjct: 893 MYESWSVPTAVLLAAPLGILGAVLANTFKGLERDIYFQVAMLTTVGLTSKNAILIVEFAK 952 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802 +N+ + I ++ + L V TS+A + V+P+A+ G + + Sbjct: 953 ENL---EKGAGLIEAIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVL 1009 Query: 803 FGIVVAA 809 G++V Sbjct: 1010 GGMIVGT 1016 >gi|238783579|ref|ZP_04627600.1| Acriflavine resistance protein B [Yersinia bercovieri ATCC 43970] gi|238715457|gb|EEQ07448.1| Acriflavine resistance protein B [Yersinia bercovieri ATCC 43970] Length = 1050 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 69/689 (10%), Positives = 178/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIILMLAGALAIM-----KLPVAQYPTIAPPA-------------ITISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNVKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNYNLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVQLGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALDTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFG G R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D +A + V ++ + L + +G V Sbjct: 516 NRMFEKSTHHYTDSVANILRSTGRYLVIYLVIVIGMGVLFLRLPTSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L + + + F V G +K Sbjct: 576 QMPAGATQERTQKVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RPGEQNKVPAIVARASAAFSQIKDGLVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + +++ + ++ K+ Sbjct: 258 SQVRLKDVAIVQLGAESYNIIARYNGKPAAGIGIKLATGANALDTSAAVKAELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMDLMQELAGKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + VLP+ + G + + G++ A Sbjct: 958 G--LVESTLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|22124956|ref|NP_668379.1| multidrug efflux protein [Yersinia pestis KIM 10] gi|45440647|ref|NP_992186.1| multidrug efflux protein [Yersinia pestis biovar Microtus str. 91001] gi|108808619|ref|YP_652535.1| multidrug efflux protein [Yersinia pestis Antiqua] gi|108811122|ref|YP_646889.1| multidrug efflux protein [Yersinia pestis Nepal516] gi|145600027|ref|YP_001164103.1| multidrug efflux protein [Yersinia pestis Pestoides F] gi|149365021|ref|ZP_01887056.1| multidrug efflux protein [Yersinia pestis CA88-4125] gi|162421154|ref|YP_001607260.1| multidrug efflux protein [Yersinia pestis Angola] gi|165927622|ref|ZP_02223454.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis str. F1991016] gi|165935980|ref|ZP_02224550.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis str. IP275] gi|166011021|ref|ZP_02231919.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua str. E1979001] gi|166213071|ref|ZP_02239106.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua str. B42003004] gi|167399702|ref|ZP_02305226.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421552|ref|ZP_02313305.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423277|ref|ZP_02315030.1| acriflavine resistance protein B [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218930163|ref|YP_002348038.1| multidrug efflux protein [Yersinia pestis CO92] gi|229838735|ref|ZP_04458894.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896112|ref|ZP_04511282.1| multidrug efflux protein [Yersinia pestis Pestoides A] gi|229899303|ref|ZP_04514446.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901353|ref|ZP_04516475.1| multidrug efflux protein [Yersinia pestis Nepal516] gi|294504868|ref|YP_003568930.1| multidrug efflux protein [Yersinia pestis Z176003] gi|21957797|gb|AAM84630.1|AE013708_9 acridine efflux pump [Yersinia pestis KIM 10] gi|45435504|gb|AAS61063.1| multidrug efflux protein [Yersinia pestis biovar Microtus str. 91001] gi|108774770|gb|ABG17289.1| multidrug efflux protein [Yersinia pestis Nepal516] gi|108780532|gb|ABG14590.1| multidrug efflux protein [Yersinia pestis Antiqua] gi|115348774|emb|CAL21728.1| multidrug efflux protein [Yersinia pestis CO92] gi|145211723|gb|ABP41130.1| multidrug efflux protein [Yersinia pestis Pestoides F] gi|149291434|gb|EDM41508.1| multidrug efflux protein [Yersinia pestis CA88-4125] gi|162353969|gb|ABX87917.1| acriflavine resistance protein B [Yersinia pestis Angola] gi|165916125|gb|EDR34732.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis str. IP275] gi|165920376|gb|EDR37653.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis str. F1991016] gi|165990021|gb|EDR42322.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua str. E1979001] gi|166205858|gb|EDR50338.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua str. B42003004] gi|166960471|gb|EDR56492.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052206|gb|EDR63614.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057447|gb|EDR67193.1| acriflavine resistance protein B [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681282|gb|EEO77376.1| multidrug efflux protein [Yersinia pestis Nepal516] gi|229687705|gb|EEO79778.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695101|gb|EEO85148.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701035|gb|EEO89064.1| multidrug efflux protein [Yersinia pestis Pestoides A] gi|262366853|gb|ACY63410.1| multidrug efflux protein [Yersinia pestis D182038] gi|294355327|gb|ADE65668.1| multidrug efflux protein [Yersinia pestis Z176003] Length = 1050 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITIAANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 PGVGDVQLFGSQ-YAMRIWMDPHKLNNYKLTPVDVINAIKIQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPSGLTVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFG G R F+IT+ ++++S+ A+ + A+ +++ K + Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIKKGDHGPKTGFFGWF 515 Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + V + ++ + + +G V Sbjct: 516 NNMFEKSTHHYTDSVANILRSTGRYLVIYLAIVIGMAVLFMRLPSSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L + + + F V G +K Sbjct: 576 QLPAGATQERTQKVLNHVTDYYLDKEKNVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RKGEQNKVPAIVSRASAAFSKIKDGMVFA 664 Score = 78.2 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 88/247 (35%), Gaps = 6/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + +++ + ++ K+ Sbjct: 258 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + I + + +++ + + L + + + Sbjct: 318 PSGLTVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495 Query: 823 IYDWRAK 829 + K Sbjct: 496 MLKPIKK 502 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+E ++ +LT IG S + +++ + + M + +S+ L Sbjct: 915 ATLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLESVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G++ A +I Sbjct: 973 PILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018 >gi|170754258|ref|YP_001782697.1| preprotein translocase subunit SecF [Clostridium botulinum B1 str. Okra] gi|169119470|gb|ACA43306.1| protein-export membrane protein SecF [Clostridium botulinum B1 str. Okra] Length = 287 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 148/287 (51%), Gaps = 8/287 (2%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS++ + + L GLNYGIDFKGG + + + V ++ Sbjct: 7 KTKIWFSISLIIILTGMFFLIKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 ++ + N + ++ ++ VK K + + + +GP + +E Sbjct: 67 SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L RK ++ +II+ IAMLIY+ IRF++ FAL AI L+ DI T+ +A+F + + + +A Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFNFALAAILGLVHDILITVSIYAIFKLPVSSSFIA 180 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 AVLT++GYS+ND +V++DR+R+N K ++ + SI +T+ RS+ T + +++ Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANISITQTMSRSINTVLTTLFTIV 239 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + V+ I FA P+ GI+ SSIFI++P+ + + N Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTQLGNK 285 >gi|333009896|gb|EGK29331.1| inner membrane protein [Shigella flexneri K-272] gi|333020732|gb|EGK39992.1| inner membrane protein [Shigella flexneri K-227] Length = 1049 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTITPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVAVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|284048855|ref|YP_003399194.1| protein-export membrane protein SecF [Acidaminococcus fermentans DSM 20731] gi|283953076|gb|ADB47879.1| protein-export membrane protein SecF [Acidaminococcus fermentans DSM 20731] Length = 293 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 87/293 (29%), Positives = 151/293 (51%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 ++ I+ + I I +F G N GIDF GG L + ++PV ++ VR+ Sbjct: 1 MKKFSIVKHARIFFSITAVVLIVGIVSMFARGFNLGIDFTGGSILDIKFDQPVTVAQVRT 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L Q+G Q ++ + V ++ + + + E Sbjct: 61 VLSDHQLGSSVIQLGSSDQQVESSQSVLIRTGLISDSQRVDVMNDLSNRLGHNEVLRVEN 120 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG + +L++ + V++S + M+IYI IRF+ FAL AI LI+D+ TL +F++ + Sbjct: 121 VGATVGGDLVKSAVGAVVLSWVLMIIYITIRFELRFALAAIVALIIDVMVTLTWFSVLHL 180 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 E + + VAA+LT++GYSVN +VV+DR+R+N+ + + S DL+D SI +T+ RSVYT+ Sbjct: 181 EIDSSFVAALLTVVGYSVNGTIVVFDRIRENLHTHRRNESMGDLVDASIWQTMTRSVYTT 240 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + +V+ + ++GG I +F+ M G +S F+A + LF + Sbjct: 241 LTTLFAVVAIFLFGGETIHNFSFAMLVGFCSGFYTSTFLAGSMWLFFRKKLKR 293 >gi|115379874|ref|ZP_01466936.1| protein-export membrane protein SecF [Stigmatella aurantiaca DW4/3-1] gi|310822778|ref|YP_003955136.1| protein-export membrane protein secf [Stigmatella aurantiaca DW4/3-1] gi|115363111|gb|EAU62284.1| protein-export membrane protein SecF [Stigmatella aurantiaca DW4/3-1] gi|309395850|gb|ADO73309.1| Protein-export membrane protein SecF [Stigmatella aurantiaca DW4/3-1] Length = 385 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 132/246 (53%), Gaps = 4/246 (1%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + + + +++ +E G + + +A + + Sbjct: 129 INFRSATTLTPQAIKAAVEKSGTGVQEVRELGSAQGSSGFDYQVVASGMADKVFSALSQ- 187 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 + P + + VGP++ ++L +GI+ ++ + A+L+Y+ RF + F GA+ + Sbjct: 188 --GQASPDFEQRRVDYVGPQVGKQLRNRGIMALVYAMFAILVYVAFRFDFKFGPGALLAM 245 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + D+ GF+ + EFNLT++AA+LT++GYSVND +V+YDR+R++M Y ++ Sbjct: 246 LHDVVMVAGFYLVSRREFNLTSIAALLTIVGYSVNDTIVIYDRIREDMNKYQ-GKPLAEV 304 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 I+ +IN+TLGR++ TS +S++ + ++G I FA M GI+V SS++IA+P+ Sbjct: 305 INIAINDTLGRTILTSGTTALSLVGLLIFGVGEIWDFAAAMLVGILVGTYSSVYIASPLT 364 Query: 821 LFIYDW 826 +++ + Sbjct: 365 IWLDER 370 >gi|283781865|ref|YP_003372620.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pirellula staleyi DSM 6068] gi|283440318|gb|ADB18760.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pirellula staleyi DSM 6068] Length = 1079 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 73/544 (13%), Positives = 156/544 (28%), Gaps = 31/544 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++I +G++ ++P +P + Sbjct: 10 RPIFATVVSTVIVILGIIA-----YYDLPAAQYPDIVPPTIV---------VRASYPGAS 55 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 D + + ++ + ++ +T++F + V + Sbjct: 56 PDVIAETVATPIEQEVNGVEDMLYMSSQSTNDGAMTLTITFKLGTDLDKAQVLVQNRVAT 115 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 ++L D ++ + T +++ + + + Q D + + Sbjct: 116 AEARLPEDVRRLGVTTIKSSPDLLMVIHMVSPENRFDQLYIGNYALIQVRDALARVDGVG 175 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L L T + N + G + + Q Sbjct: 176 DVSAFGLREYSMRIWLDPDKLANLGLTAGDVVASLREQNVQVASGVIGQPPIPQGNDFQL 235 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + I G R I Sbjct: 236 TVNTLGRL-------------LTPEQFESIIVRSGSGGRVVRVKDVARIELGARDYSVNS 282 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + + + T + L + S Sbjct: 283 YLDNQPAVALAIAQRPGSNALETADGVEATIRELSRNFPKGLEYRIVYNPTEFVRESIDS 342 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV+IV+ + + + LV +I +++I T A +S G +L + S+ G+V Sbjct: 343 VIHTLYEAVVLVVIVVLVFLQNWRATLVPLVAIPVSLIGTFAAMSAFGFSLNMLSLFGLV 402 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478 L IG+ VD I+V E + S + S A I + T + Sbjct: 403 LAIGIVVDDAIVVVENVERHIADGLSPRDAAYKAMSEVTGAVIAIAVGLSAVFVPTAFIS 462 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G R FA+T+ +S L+S F ++++ A+ + +++ K L F Sbjct: 463 GISGQFFRQFALTIAVSTLLSAFNSLTLSPALCVILLQPHGAKKDWFGRLWDFCFGWFFR 522 Query: 539 AIQF 542 Sbjct: 523 LFNR 526 Score = 51.2 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 53/144 (36%), Gaps = 8/144 (5%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 A+ I + L LG L G++ NL + LIG + + V++ + + Sbjct: 904 SLPMAIILIAPVCLP-FALLGVH-LRGMDNNLITQIGFVVLIGLAAKNAVLIVEFA---V 958 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 +L + + +S L + TS A + V+P+A G + + G+ Sbjct: 959 QLEEQGRTAMEAAIESCRMRLRPIMMTSFAFILGVVPLARAEGPGSELRQVLGTAVFSGM 1018 Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829 + +F+ + + + Sbjct: 1019 LGVTILGLFLTPAFYVLLRGITDR 1042 Score = 46.6 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 9/136 (6%) Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 L AI + + T + FG N+ ++ ++ IG V+D +VV + + + Sbjct: 369 LVPLVAI---PVSLIGTFAAMSAFGFSLNMLSLFGLVLAIGIVVDDAIVVVENV---ERH 422 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVV 807 +S RD K+++E G + ++ +P + G G FA+ +A ++ Sbjct: 423 IADGLSPRDAAYKAMSEVTGAVIAIAVGLSAVFVPTAFISGISGQFFRQFALTIAVSTLL 482 Query: 808 AASSSIFIAAPILLFI 823 +A +S+ ++ + + + Sbjct: 483 SAFNSLTLSPALCVIL 498 >gi|153950197|ref|YP_001402028.1| acriflavine resistance protein B [Yersinia pseudotuberculosis IP 31758] gi|170025425|ref|YP_001721930.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Yersinia pseudotuberculosis YPIII] gi|152961692|gb|ABS49153.1| acriflavine resistance protein B [Yersinia pseudotuberculosis IP 31758] gi|169751959|gb|ACA69477.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia pseudotuberculosis YPIII] Length = 1050 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITIAANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 PGVGDVQLFGSQ-YAMRIWMDPHKLNNYKLTPVDVINAIKIQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPSGLTVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFG G R F+IT+ ++++S+ A+ + A+ +++ K + Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIKKGDHGPKTGFFGWF 515 Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + V + ++ + + +G V Sbjct: 516 NNMFEKSTHHYTDSVANILRSTGRYLVIYLAIVIGMAVLFMRLPSSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L + + + F V G +K Sbjct: 576 QLPAGATQERTQKVLNQVTDYYLDKEKNVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RKGEQNKVPAIVSRASAAFSKIKDGMVFA 664 Score = 78.2 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 88/247 (35%), Gaps = 6/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + +++ + ++ K+ Sbjct: 258 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + I + + +++ + + L + + + Sbjct: 318 PSGLTVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495 Query: 823 IYDWRAK 829 + K Sbjct: 496 MLKPIKK 502 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+E ++ +LT IG S + +++ + + M + +S+ L Sbjct: 915 ATLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLESVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G++ A +I Sbjct: 973 PILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018 >gi|194367239|ref|YP_002029849.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Stenotrophomonas maltophilia R551-3] gi|194350043|gb|ACF53166.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Stenotrophomonas maltophilia R551-3] Length = 1040 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 82/706 (11%), Positives = 187/706 (26%), Gaps = 50/706 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + +P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLALF-----KLPISMYPNVAPPA-------------VEISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + +K S Q ITL+F + +V Sbjct: 50 PGASAKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + + + + A + + + +D++ Sbjct: 110 KLQLAMPLLPQEVQRQGINVAKSSSGFLNVIAFVSEDGSMDANDIADYVGSNVVDRLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L + +++ N G Sbjct: 170 PGVGNIQVFG-GKYAMRIWLDPNKLHTYGLSVPEVTAAIKAQNAQVAIGQLGGAPSVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + I + Sbjct: 229 QLNATINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T L + Sbjct: 276 DFVTRYNGQPASGLAVTLATGANALDTAAGVDATLKELEGFFPAGLKAEIPYDTTPFVRV 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +LS+LG ++ + ++ Sbjct: 336 SIKGVVQTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLSVLGFSVNMLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G R F+ T+ ++ +S+ AI + A+ +++ K + Sbjct: 456 MAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLKKGEHHVAHKGWSGR 515 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + F R S + +L GI + +GVL R + Sbjct: 516 FFNGFNRGFDR-------TSESYQRGVRGILHRPWRFMGIVAALFLLMGVLFVRLPSSFL 568 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTI 651 + L + E+ + + +E V + Sbjct: 569 PNEDQGVLMALVQAPVGATQERTLESIAALEKHFMENEKDAVESVFSVQGFSFAGMGQNA 628 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 + G++ + A+A L I F + F AI Sbjct: 629 GMAFVKLKDWKDRDADNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 84/241 (34%), Gaps = 6/241 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + D + + L +++ ++ K++ P Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVDATLKELEGFFPAGLKA 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 R I+ + ++ + + + + +++ + + L + + + T G Sbjct: 324 EIPYDTTPFVRVSIKGVVQTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 ++ G N+ + A++ IG V+D +VV + + + +S + KS+ + G Sbjct: 384 SVLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V + +PMA GS F+ + + ++ +I + + + Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501 Query: 829 K 829 K Sbjct: 502 K 502 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 78/245 (31%), Gaps = 13/245 (5%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + V S S + N Sbjct: 781 FRMVPEDFDLWSVKNDKGEMVPFSAFASKRWDYGSPRLERYNGVSATEIQGEPAPGVASG 840 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + ++ K+ T + + L+ +S + + + + + Sbjct: 841 DAMAEIEQLAKQLPQGFGVEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAALY 894 Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + W + L I + G+E ++ A+LT +G + + +++ + ++N Sbjct: 895 ESWSVPTSVLLVAPLGILGAVLANTFRGMERDIYFQVAMLTTVGLTSKNAILIVEFAKEN 954 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + S + I ++ + L V TS+A + V+P+A+ G + + G Sbjct: 955 L---EKGASLIESIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVLGG 1011 Query: 805 IVVAA 809 ++V Sbjct: 1012 MIVGT 1016 >gi|296101597|ref|YP_003611743.1| AcrB protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056056|gb|ADF60794.1| AcrB protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1048 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 66/685 (9%), Positives = 174/685 (25%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + + Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + S Sbjct: 280 KFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFFPSGLKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L++ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAIFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGGHGEHKGFFGWFNRMF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + + I+ + + + +G Sbjct: 520 DKSTHHYTDSVGNILRSTGRYLLLYIIIVVGMAYLFVRLPSSFLPDEDQGVFLTMAQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + ++ + + E F V G +K Sbjct: 580 GASQERTQKVLDEVTDYYLTKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGE 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 ENKVEAITGRAMGTFSQIKDAMVFA 664 Score = 77.4 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + DI + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A+FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILAIFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMNLMEELASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + VLP+ + G + + G++ A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|163854938|ref|YP_001629236.1| AcrB/AcrD/AcrF family protein [Bordetella petrii DSM 12804] gi|163258666|emb|CAP40965.1| AcrB/AcrD/AcrF family protein [Bordetella petrii] Length = 1026 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 68/533 (12%), Positives = 163/533 (30%), Gaps = 39/533 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +L +I +GL+ + + +P+ + + + Sbjct: 9 KRPVFASVLSLIIVLVGLIS-----YSRLTVREYPNIDEPIV---------SVNTIYKGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + ++ + ++ + R +++I + F SR + A +V + Sbjct: 55 SPEVIESQVTKPLEDQLAGIEGVNVMTSRSRTERSQINIKFDLSRDPDAAAAEVRDKVSR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + ++ I+ AI+ S I R ++ + Sbjct: 115 ARRYLPDEIDEPIIGKVEADAYPIIYIAVES--GSLSAIQTSDYINRYIKTRLSVLPGAA 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + L + D +L T + N R S + Sbjct: 173 EVRVYGERLPSMRIYVDRDKLAAYNLTVQDVETALASQNVEIPAGRIESRDREFSVVSST 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 ++ + + I + + + A Sbjct: 233 DLQTPAQFAAIVVA--------------------NVKGYPVRLGDVAKVEIGAADDRILS 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + ++ + + A L + + S Sbjct: 273 RFNGRPAINIGLTRQSTANPLDLSKAVRAEVAQLNETLPAGMKLNIAYDSSVFIERSIQS 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++V+F + + ++ +I +++I L+ L G ++ ++ +V Sbjct: 333 VFRTIGEAIVLVVLVIFFFLRNLRASIIPIVTIPVSLIGACGLMYLFGFSVNTLTLLAMV 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IGL VD I+V E I + + G + +T + L F Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGMPRRQAAFQGAKEIGFAVVAMTLTLVTVYAPLAFAT 452 Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 G R FA+T+ ++L+S F A+++ M ++R++ + N + + Sbjct: 453 GRTGRLFIEFALTLAGAVLVSGFVALTLTPMMCSVLLRHEPRHNRWYNLVEGW 505 Score = 87.1 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 78/216 (36%), Gaps = 7/216 (3%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + + + ++ + ++ E +P N I+ + + + + Sbjct: 285 TRQSTANPLDLSKAVRAEVAQLNETLPAGMKLNIAYDSSVFIERSIQSVFRTIGEAIVLV 344 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 ++ I+ + ++ I T+ + + G LFG N + A++ IG V+D +V Sbjct: 345 VLVIFFFLRNLRASIIPIVTIPVSLIGACGLMYLFGFSVNTLTLLAMVLAIGLVVDDAIV 404 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---S 796 V + + + + R + E V ++ P+A G Sbjct: 405 VLENI---FRHIEEGMPRRQAAFQGAKEIGFAVVAMTLTLVTVYAPLAFATGRTGRLFIE 461 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 FA+ +A ++V+ ++ + + + ++ R Sbjct: 462 FALTLAGAVLVSGFVALTLTPMMCSVLLRHEPRHNR 497 Score = 46.6 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 9/139 (6%) Query: 668 KGIVGVIISAIAMLIY--IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 G + ++ + IY + +F+ W + ++ L +T L G ++ + Sbjct: 845 SGSIYLVFAMALAFIYLVMAAQFESWRNPFIIMLSVPLSMTGALLALWASGGTLSIYSQI 904 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 ++TL+G +++ + +L D + ++ L + T+ A + L Sbjct: 905 GLITLVGLITKHGILIVEFAN---QLRDQGRELVDAVVEASVLRLRPILMTTGAMVLGTL 961 Query: 785 PMAVW---GGSVIGSFAIP 800 P+AV G Sbjct: 962 PLAVSHGAGAESRQQIGWV 980 >gi|291616574|ref|YP_003519316.1| AcrB [Pantoea ananatis LMG 20103] gi|291151604|gb|ADD76188.1| AcrB [Pantoea ananatis LMG 20103] Length = 1049 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 66/565 (11%), Positives = 156/565 (27%), Gaps = 46/565 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L L + ++++P+ P + ++ + Sbjct: 8 RPIFAWVLAIIVMLAGALSIL-----KLPIEQYPNVAPPA-------------IEIQANY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L + + + + S +T+SF + +V Sbjct: 50 PGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSDSSGALTLTISFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ D + + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGIQVKKSSSSFLMVAGFISDDGSMNQNDISDYVASNIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DPS+L T + N G Sbjct: 170 PGVGDTQVFGAQ-YAMRIWMDPSKLNNYQLTPVDVINALKTQNAQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTST-------------KEFGNILLKVNADGSQVRLRDVAQIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T E A L+ + Sbjct: 276 EIIARYNGKPASGIGIKLATGANALNTAEAVKAELAKLQPTFPAGMKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A++S G ++ ++ Sbjct: 336 SIFEVVKTLMEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMVEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +K + + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPVKKGDHGKTTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F ++ V Sbjct: 511 FFGWFNRLFDKSTHHYVDSVGHIVR 535 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 87/247 (35%), Gaps = 6/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + + +++ ++ K+ Sbjct: 258 SQVRLRDVAQIELGGENYEIIARYNGKPASGIGIKLATGANALNTAEAVKAELAKLQPTF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + + + + +++ + + L + + + Sbjct: 318 PAGMKVVYPYDTTPFVKISIFEVVKTLMEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ +S+ Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATKRSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 EQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT 495 Query: 823 IYDWRAK 829 + K Sbjct: 496 MLKPVKK 502 Score = 64.3 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L T + G L + IS I + + + ++ W Sbjct: 838 EAMNLMEELASKLPTGIGFDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L F L G+ ++ V +LT +G S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLFTTLRGLSNDVYFVVGLLTTVGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + VLP+A+ G + + G+V A + Sbjct: 958 G--LVEATLEACRMRLRPILMTSLAFILGVLPLAISTGAGSGAQNAVGTGVMGGMVTATA 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|307298264|ref|ZP_07578068.1| protein-export membrane protein SecF [Thermotogales bacterium mesG1.Ag.4.2] gi|306916350|gb|EFN46733.1| protein-export membrane protein SecF [Thermotogales bacterium mesG1.Ag.4.2] Length = 306 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 88/305 (28%), Positives = 153/305 (50%), Gaps = 10/305 (3%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 F+ R + + +S++ + S+ +FT G N+G+DF GGI++ V Sbjct: 1 MTFKADFVGKRKYFIALSLVLIVVSVIFIFTKGFNFGVDFTGGIEISVSVQDVDMTVAEM 60 Query: 596 SNLESLQIGDI---------SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 L S + D + ++ +M+ + V Sbjct: 61 RELLSAEDPDFAAARIIKQRPLTEEGSSEQRSRFSIIVNTSESEESITAKMLAGLEVKDV 120 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 I + + ++E+ + V +S +L+YI IRFK+ F +GAI TLI D+ Sbjct: 121 TNDNILSVSTISGYAAQEIRGYAWIAVTVSMALLLLYITIRFKFSFGVGAILTLIHDVII 180 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 LGF+++FGIEFN VA++LTL+GYS+ND +VVYDR+R+N K + +++ SIN Sbjct: 181 VLGFYSIFGIEFNAPVVASLLTLVGYSLNDTIVVYDRIRENTKKM-RGKTIETVVNTSIN 239 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + + RS+ TS+ F++VL + ++ G V+ FA M G+VV SS++I++P+++ Sbjct: 240 DVIVRSINTSLTTFLAVLTLFIFSGEVLRPFAFGMLVGVVVGTYSSLYISSPVVIEWLKR 299 Query: 827 RAKNA 831 + Sbjct: 300 SESRS 304 >gi|311103922|ref|YP_003976775.1| AcrB/AcrD/AcrF family protein 1 [Achromobacter xylosoxidans A8] gi|310758611|gb|ADP14060.1| AcrB/AcrD/AcrF family protein 1 [Achromobacter xylosoxidans A8] Length = 1038 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 77/635 (12%), Positives = 186/635 (29%), Gaps = 41/635 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +L +I IGL+ + + +P + Sbjct: 9 KRPVFASVLSLIIVLIGLIS-----YSRLTVREYPKIDEPIV---------SVDTTYKGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + ++ + ++ + R ++ I + F SR + A +V + Sbjct: 55 SPEVIESQVTKPLEDQLAGIEGVDVMTSRSRSERSLINIKFNLSRNPDAAAAEVRDKVSR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + ++ I+ AI+ S I R ++ + Sbjct: 115 ARRFLPDEIDEPIIGKVEADSQPIIYIAVES--GTYSAIQTSDYINRYIKTRLSVLPGAA 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + L + D +L T + N R S + Sbjct: 173 EVRVFGERLPSMRIYVDRDKLAAYGLTVQDVEAALRSQNVEIPAGRIESRAREFSVVSST 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 ++ + ++ + N+ A Sbjct: 233 DLQTPAQFE--------------------NVIVANVKGYPVRMRDVANVEIAAASDRVLS 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + ++ + + A A L + + S Sbjct: 273 RFNGKPAINIGVTRQSTANPLELSKAAREEVARLNENLPAGMKLNIAYDSSVFIERSIDS 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++V+F + + ++ +I ++++ AL+ L G ++ ++ +V Sbjct: 333 VFHTIGEAIVLVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMV 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IGL VD I+V E I + + G + +T + L F Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGMPRKEAALRGSREIGFAVVAMTMTLVTVYAPLAFAT 452 Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G R FA+ + ++L+S F A+++ M ++R++ S N + + Sbjct: 453 GRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQSSHSRWYNMIEGWLNAMSNG 512 Query: 539 AIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 + + A R + + I ++ + + + + + + + + Sbjct: 513 YRRALGASLRHRWLVVVIGVAVAAASGVLFKVVKSELAPIEDRGVVFGIVSSPEGATLNY 572 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 LES+ + + V + + Sbjct: 573 TLESMLGIEKFYSEIPEASGSQVTVGFPTVTDGTA 607 Score = 84.4 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 84/244 (34%), Gaps = 7/244 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + + + + + + + + ++ ++ E +P Sbjct: 257 DVANVEIAAASDRVLSRFNGKPAINIGVTRQSTANPLELSKAAREEVARLNENLPAGMKL 316 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 N I + + + +++ I+ + ++ I T+ + + Sbjct: 317 NIAYDSSVFIERSIDSVFHTIGEAIVLVVLVIFFFLRNLRASIIPIVTIPVSLVGACALM 376 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 LFG N + A++ IG V+D +VV + + + + ++ + E Sbjct: 377 YLFGFSINTLTLLAMVLAIGLVVDDAIVVLENI---FRHIEEGMPRKEAALRGSREIGFA 433 Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V +M P+A G FA+ +A ++V+ ++ + + + ++ Sbjct: 434 VVAMTMTLVTVYAPLAFATGRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQS 493 Query: 829 KNAR 832 ++R Sbjct: 494 SHSR 497 Score = 49.3 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 62/170 (36%), Gaps = 9/170 (5%) Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 G + ++ + IY+ + W + ++ L +T L L G ++ + Sbjct: 845 SGSIYLVFAMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQI 904 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 ++TL+G +++ + +L + + ++ L + T+ A + + Sbjct: 905 GLITLVGLITKHGILIVEF---TNQLRDEGKELFEAVVEASVLRLRPILMTTGAMVLGTV 961 Query: 785 PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 P+A+ G + G+++ ++F+ I R K Sbjct: 962 PLALSTGAGAESRQQIGWVLVGGLMLGTLLTLFVVPVAYTLIATARKKPG 1011 >gi|311280626|ref|YP_003942857.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Enterobacter cloacae SCF1] gi|308749821|gb|ADO49573.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Enterobacter cloacae SCF1] Length = 1048 Score = 201 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 68/689 (9%), Positives = 173/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------IAITAMY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ITL+F + +V Sbjct: 50 PGADAETVQNTVTQVIEQNMNGIDNLMYMSSNGDSTGTATITLTFQSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKASSSFLMVVGVINTNGTMSQDDISDYVAANMKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L T + N G Sbjct: 170 NGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISALKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTNTE-------------EFGNILLKVNQDGSQVRLRDVAKIELGGESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T + + + Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALNTADAIRAELKRMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L++ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAIFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++ +S+ A+ + A+ + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIEKGGHGEHKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D + + + I+ + + + +G Sbjct: 516 NRMFDKSTHHYTDSVGNILRSTGRYLLLYIIIVVGMAYLFVRLPSSFLPDEDQGVFLSMA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + ++ + + E F V G +K Sbjct: 576 QLPAGATQERTQKVLDEMTDYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RPGEENKVAAITQRAMVRFSQIKDAMVFA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + K++ Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALNTADAIRAELKRMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A+FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILAIFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.2 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMALMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L + G+ ++ +LT IG S + +++ + + M Sbjct: 898 FSVMLVVPLGVVGALLAATMRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + VLP+ + G + + G+V A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMVTATI 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|169629963|ref|YP_001703612.1| preprotein translocase subunit SecF [Mycobacterium abscessus ATCC 19977] gi|169241930|emb|CAM62958.1| Probable protein-export membrane protein SecF [Mycobacterium abscessus] Length = 424 Score = 200 bits (508), Expect = 6e-49, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 134/294 (45%), Gaps = 11/294 (3%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 R GIS F + +I + G +GIDF+GG ++ ++L Sbjct: 64 GKRTLWFGISGAFMVVAILSIAIKGFVFGIDFEGGTKVWFPKGDATVQQTEDVFSQTLGH 123 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ----NTEIVGP 659 S + ++++ + D+ +++ + + + P + V Sbjct: 124 DAESIVVTGTGDSASIQIRTEKLDNEQSSKLHKALFDRFAPKGPDGKPSIDAISDSDVSE 183 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ K + + + + IYI +R++ Y +L A+ L+ D+ T G ++L G E Sbjct: 184 TWGSQITNKALWALGVFLVLAGIYIAVRYERYMSLAALAALVFDLLVTAGVYSLVGFEVT 243 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777 V +LT++G+S+ D V+V+D++ +N +T+ ++ + + ++N+T RS+ TS+ Sbjct: 244 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTSRRTYAEHANLAVNQTFMRSINTSL 303 Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + I VL + + G + A+ GI+V SSIF A P+L+ + + Sbjct: 304 ISAIPVLSLIVVAIWLLGVGTLKDLALVQLVGILVGTYSSIFFATPLLVALRER 357 >gi|41407142|ref|NP_959978.1| preprotein translocase subunit SecF [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395493|gb|AAS03361.1| SecF [Mycobacterium avium subsp. paratuberculosis K-10] Length = 435 Score = 200 bits (508), Expect = 6e-49, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 132/318 (41%), Gaps = 15/318 (4%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 L A + + R GIS +I + G +GIDF GG + + A Sbjct: 38 RHSFLSRLYTGTGAFEVVGRRRLWFGISGAIVAVAILSIALRGFTFGIDFNGGTTVSMPA 97 Query: 586 ---NRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEM 637 + V + V+ D G + + + + Sbjct: 98 AGTHGTVHTAQVQEVFRKTLGTDPESVVVVGNGAAATVQIRSETLTNDQTTKLRNALFDA 157 Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 K + P + V ++ K ++ +++ + +YI +R++ Y L AI Sbjct: 158 FGPKGADGKPSKQAISDSQVSETWGDQITDKALIALVVFLALVGLYITVRYERYMTLAAI 217 Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSI 755 + D+T T G ++L G E V +LT++G+S+ D V+V+D++ +N + +T Sbjct: 218 AAMFFDLTVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTRDFQHTNRR 277 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAAS 810 +F + + +IN+T RS+ TS+ + VL + + G + A+ GI+V Sbjct: 278 TFAEQANLAINQTFMRSINTSLIGVLPVLALMVVAVWLLGVGTLKDLALVQLVGILVGTY 337 Query: 811 SSIFIAAPILLFIYDWRA 828 SSIF+A P+L+ + + Sbjct: 338 SSIFVATPLLVTLRERTE 355 >gi|51595333|ref|YP_069524.1| acridine/multidrug efflux system protein [Yersinia pseudotuberculosis IP 32953] gi|186894351|ref|YP_001871463.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Yersinia pseudotuberculosis PB1/+] gi|51588615|emb|CAH20223.1| RND family, acridine/multidrug efflux pump [Yersinia pseudotuberculosis IP 32953] gi|186697377|gb|ACC88006.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia pseudotuberculosis PB1/+] Length = 1050 Score = 200 bits (508), Expect = 6e-49, Method: Composition-based stats. Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITIAANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 PGVGDVQLFGSQ-YAMRIWMDPHKLNNYKLTPVDVINAIKIQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPSGLTVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFG G R F+IT+ ++++S+ A+ + A+ +++ K + Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIKKGDHGPKTGFFGWF 515 Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + V + ++ + + +G V Sbjct: 516 NNMFEKSTHHYTDSVANILRSTGRYLVIYLAIVIGMAVLFMRLPSSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L + + + F V G +K Sbjct: 576 QLPAGATQERTQKVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RKGEQNKVPAIVSRASAAFSKIKDGMVFA 664 Score = 78.2 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 88/247 (35%), Gaps = 6/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + +++ + ++ K+ Sbjct: 258 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + I + + +++ + + L + + + Sbjct: 318 PSGLTVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495 Query: 823 IYDWRAK 829 + K Sbjct: 496 MLKPIKK 502 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+E ++ +LT IG S + +++ + + M + +S+ L Sbjct: 915 ATLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLESVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G++ A +I Sbjct: 973 PILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018 >gi|166711672|ref|ZP_02242879.1| preprotein translocase subunit SecD [Xanthomonas oryzae pv. oryzicola BLS256] Length = 614 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 144/520 (27%), Positives = 253/520 (48%), Gaps = 39/520 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDL GG H ++VD+ + L +++++R+ L+ I Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I +S + + + + L + + I++ Sbjct: 163 AYRSVERRADNSIQVSLGEGADADAARVALAK------------AQPTLTYDVSGQNIAV 210 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + Q+ S AIEQ++ +R R++ +G+SE TIQR G RI+++LPG QD + ++L Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + F V+ N++ G G L+ + ++G + A+ Sbjct: 271 IGATASLEFRAVVDGNAEDAVRSGNIPPEAKVYRVRDTGAPVLLNKRALVTGDQMVSASV 330 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302 + D V + G R F T + + + Sbjct: 331 SNDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 P A GK + A LA +L++GSL ++ VEE +G LG++++ Sbjct: 391 EALPATRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A+V + ++F + Y +G + ++ N+++ +A++SL GAT+TLP AG+ L Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG Sbjct: 511 SVGLSVDANVLINERIREELRLGVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G ++GFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + G + V+ + + E + + +Q Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALPATRIAGVFGKNFQTT 409 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 K + ++GP + E + +G+ V+ S + L++ I Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F L+ ++ + +LFG L A + +G SV+ V++ +R+R+ Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++L + + I + G + ++ I + + +G + FA+ M GI Sbjct: 529 ELRL---GVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585 Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833 + ++I ++ + + IY R K + Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612 Score = 41.2 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 30/121 (24%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59 + W L ++ + L ALPN + + Sbjct: 2 LEFPRWKYFLILLVLAVSALYALPNIYQKDPS---------------------VQITASR 40 Query: 60 -VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 DD + + + LK GI ++ + + + + + + D + Sbjct: 41 GAQLDDALRSRID-------ADLKAAGITPKAVTKEGDSLMVRLPSLQAQTRANDVLRQQ 93 Query: 119 L 119 L Sbjct: 94 L 94 >gi|126031026|pdb|2J8S|A Chain A, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors gi|126031027|pdb|2J8S|B Chain B, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors gi|126031028|pdb|2J8S|C Chain C, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 1055 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|116667260|pdb|2GIF|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia Coli gi|116667261|pdb|2GIF|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia Coli gi|116667262|pdb|2GIF|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia Coli gi|116667803|pdb|2HRT|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia Coli gi|116667804|pdb|2HRT|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia Coli gi|116667805|pdb|2HRT|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia Coli gi|116667806|pdb|2HRT|D Chain D, Asymmetric Structure Of Trimeric Acrb From Escherichia Coli gi|116667807|pdb|2HRT|E Chain E, Asymmetric Structure Of Trimeric Acrb From Escherichia Coli gi|116667808|pdb|2HRT|F Chain F, Asymmetric Structure Of Trimeric Acrb From Escherichia Coli Length = 1057 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|238898703|ref|YP_002924384.1| multidrug efflux pump [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466462|gb|ACQ68236.1| multidrug efflux pump [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 1046 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 67/689 (9%), Positives = 173/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ +G L + + ++P+ P +++ + Sbjct: 8 RPIFAWVIALIVMFLGALAI-----TKLPVAQYPAVAPPT-------------ILIVANY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117 V + ++ + + + ITL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNSIDNLLYMSSNSDSSGNANITLTFNLGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ V L + +K ++ ++ + E + + D + Sbjct: 110 KLQRVMPALPQEVQKQGVIVEKSTGNFLMFLAFISENGSMKQEEIADYVASHLKDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + NN G Sbjct: 170 NGVGDVQLFGAQ-HAMRIWLDPYKLNDFKLTPLDVMNAIQAENNQVAAGELGSAPTIAGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + N+ Sbjct: 229 QLNASIVAQTRLT-------------SAKEFSQILLKANPDGSQVRLKDVANVELGAEGY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + L + Sbjct: 276 KLNTLYNGKPATGVGIKLATGANALEASNALKEELIKLEPSFPAGFKVVHPYDTTPFIKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +LS+LG ++ ++ Sbjct: 336 SIQEVIKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLSVLGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIA 473 G+VL IGL VD I+V E + + S + + I + I Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMHEDGLSPKEASKKSMQQIQGALVGIALVLSSVFIP 455 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 L G R F++T+ ++++S+ A+ + A+ I++ + + Sbjct: 456 IAFLEGSTGEIYRQFSVTIVSAMVLSVLVALILTPALCATILKPIDKDKKNKVSAFLGWF 515 Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + + L + +G V Sbjct: 516 NHIFEKSSHHYTYSVKHILKGTGRYLIIYLFIVIGMCVLFLRLPTSFLPEEDQGVFVTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L + ++ + + + G V + Sbjct: 576 QLPVGASQERTDKVLSQVTDYFLTQEKDVIKSVLTLSGFGFNGQGQNMGLVFISLNDWSQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T+ + ++ + Sbjct: 636 RTEKKDTVSAVVARASRAFSQIKDGLVFA 664 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 92/250 (36%), Gaps = 6/250 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + ++ + +++ + L+ K+ Sbjct: 258 SQVRLKDVANVELGAEGYKLNTLYNGKPATGVGIKLATGANALEASNALKEELIKLEPSF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I++ I ++ + + + + +++ + + L + + + Sbjct: 318 PAGFKVVHPYDTTPFIKISIQEVIKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G ++ G N + ++ IG V+D +VV + + ++ +S ++ KS+ Sbjct: 378 GTFGVLSVLGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMHEDGLSPKEASKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +P+A G + F++ + +V++ ++ + + Sbjct: 436 QQIQGALVGIALVLSSVFIPIAFLEGSTGEIYRQFSVTIVSAMVLSVLVALILTPALCAT 495 Query: 823 IYDWRAKNAR 832 I K+ + Sbjct: 496 ILKPIDKDKK 505 Score = 62.8 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 83/251 (33%), Gaps = 12/251 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + + V S + + N + Sbjct: 777 PFRMLPEDINHWYVRNNQGQMVPFSSFSTTQWKYNSPRLERYNGFPSMKIQGQAAPGKST 836 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + E+ KK I T + + + IS I + + + Sbjct: 837 GEAMALMQELAKKLPNGIGYDWTGVSFQERMSANQSLFLY------AISLIFVFLCLAAL 890 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W I + + + +L L G++ ++ ++LT IG S + +++ + + Sbjct: 891 YESWSIPFSVIMVVPVGVLGSLLAAYLGGLDNDVYFQVSLLTTIGLSAKNAILIIEFSKN 950 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803 ++ + ++ L + TS+A + VLP+A+ G + + + Sbjct: 951 LIQKEGKG--LIEATLSAVRMRLRPILMTSLAFMLGVLPLAMSHGAGSGAQHALGVGVIG 1008 Query: 804 GIVVAASSSIF 814 G++ + +I+ Sbjct: 1009 GMIASTVLAIY 1019 >gi|319427316|gb|ADV55390.1| protein-export membrane protein SecD [Shewanella putrefaciens 200] Length = 604 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 162/527 (30%), Positives = 276/527 (52%), Gaps = 34/527 (6%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 + ++ P L S+ PS + I LGLDLRGG +L+VD + + Sbjct: 94 TLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVEPVYQTQAE 153 Query: 72 MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 D LR F++++ I S+ Q+ ++ ++ D+ + + + Sbjct: 154 ALVDSLRQFIREQNIRGASVHLDQSCQLNVTLPDNDARAAVRQMMKQSYPNWQ------- 206 Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 L + + I LSQ ++ + ++Q+++++R RI+++GI+E+ +QR G HRI Sbjct: 207 ----LSNADDAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGEHRIR 262 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 I+LPG QDP+ + ++G TA ++F +V L+D GN V + Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLKDKSGNSVYVGRTPVLG 317 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306 G H+ A A+ V+I+ D +G ++ E +R NIGKP+A Sbjct: 318 GDHIVDARASIGEMGM-AEVNINLDRVGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAK 376 Query: 307 --------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 Q+ + +I+G T + A LA +LRAGS+ + IVEER +G LG+ Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417 ++I G A+ G+ + +LFM + Y + G VA+ ++ N+++ LL+L+ A LTLP I Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG+VL +G+AVD+N+L+ ERI+++ ++ +S ++D GF A+STIFD+N T +I VVL Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 + G G ++GFA+T+GL +L SMFT I RA++ + + + Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G + + S + + + ++ L G Q Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I G + + L+++ + ++ Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R++ +K Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID + + I+ + + G I FA+ + G++ + Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + ++ +Y A Sbjct: 581 TGIFASRALINLVYGRDASR 600 >gi|152969016|ref|YP_001334125.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893431|ref|YP_002918165.1| acriflavine resistance protein B [Klebsiella pneumoniae NTUH-K2044] gi|330002951|ref|ZP_08304495.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3] gi|150953865|gb|ABR75895.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545747|dbj|BAH62098.1| acriflavine resistance protein B [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537107|gb|EGF63385.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3] Length = 1048 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 68/689 (9%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLSIL-----KLPVAQYPTIAPPA-------------ISITAMY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117 +Q + + ++ + ITL+F + +V Sbjct: 50 PGADAETVQNTVTQVIEQNMNGIDHLMYMSSNGDSTGTATITLTFESGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ + +++ + + S + D I + Sbjct: 110 KLALATPLLPQEVQQQGISVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISALKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTNTE-------------EFGNILLKVNQDGSQVRLRDVAKIELGGESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFFPSGMKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +++ + S + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGSHGATTGFFGWF 515 Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + V I+ + + + +G Sbjct: 516 NRMFDKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAWLFVRLPSSFLPDEDQGVFLSMA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + ++ + + E F V G +K Sbjct: 576 QLPAGATQERTQKVLDEMTNYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 636 RPGEENKVEAITARAMGYFSQIKDAMVFA 664 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + K+ Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMALMEELAGKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|188576289|ref|YP_001913218.1| preprotein translocase subunit SecD [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520741|gb|ACD58686.1| protein-export membrane protein SecD [Xanthomonas oryzae pv. oryzae PXO99A] Length = 614 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 144/520 (27%), Positives = 253/520 (48%), Gaps = 39/520 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDL GG H ++VD+ + L +++++R+ L+ I Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I +S + + + + L + + I++ Sbjct: 163 AYHSVERRADNSIQVSLGEGADADAARVTLAK------------AQPTLTYDVSGQNIAV 210 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + Q+ S AIEQ++ +R R++ +G+SE TIQR G RI+++LPG QD + ++L Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + F V+ N++ G G L+ + ++G + A+ Sbjct: 271 IGATASLEFRAVVDGNAEDAVRSGNIPPEAKVYRVRDTGAPVLLNKRALVTGDQMVSASV 330 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302 + D V + G R F T + + + Sbjct: 331 SNDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 P A GK + A LA +L++GSL ++ VEE +G LG++++ Sbjct: 391 EALPATRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A+V + ++F + Y +G + ++ N+++ +A++SL GAT+TLP AG+ L Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG Sbjct: 511 SVGLSVDANVLINERIREELRLGVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G ++GFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610 Score = 152 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + G + V+ + + E + + +Q Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALPATRIAGVFGKNFQTT 409 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 K + ++GP + E + +G+ V+ S + L++ I Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F L+ ++ + +LFG L A + +G SV+ V++ +R+R+ Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++L + + I + G + ++ I + + +G + FA+ M GI Sbjct: 529 ELRL---GVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585 Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833 + ++I ++ + + IY R K + Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612 Score = 41.6 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 30/121 (24%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59 + W L ++ + L ALPN + + Sbjct: 2 LEFPRWKYFLILLVLAVSALYALPNIYQKDPS---------------------VQITASR 40 Query: 60 -VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 DD + + + LK GI ++ + + + + + + D + Sbjct: 41 GAQLDDALRSRID-------ADLKAAGITPKAVTKEGDSLMVRLPSLQAQTRANDVLRQQ 93 Query: 119 L 119 L Sbjct: 94 L 94 >gi|330950117|gb|EGH50377.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae Cit 7] Length = 665 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 69/686 (10%), Positives = 182/686 (26%), Gaps = 43/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L ++++PS P G + Sbjct: 8 RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKDAITAQNVQVSSGQLGGLPSISGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + L P + S + Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G T+ ++ G+V Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG + F+IT+ ++ +S+ A+ A+ +++ + F Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519 Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 ++ ++ IL + + + + G+ + Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + K+ + + + ++ K E Sbjct: 580 AGSSTARTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673 +++ L + V Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAV 665 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S RD KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492 >gi|254160531|ref|YP_003043639.1| multidrug efflux system protein [Escherichia coli B str. REL606] gi|253972432|gb|ACT38103.1| multidrug efflux system protein [Escherichia coli B str. REL606] Length = 1049 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFTWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDIYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|331269247|ref|YP_004395739.1| protein-export membrane protein SecF [Clostridium botulinum BKT015925] gi|329125797|gb|AEB75742.1| protein-export membrane protein SecF [Clostridium botulinum BKT015925] Length = 289 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 145/286 (50%), Gaps = 5/286 (1%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 IS++ + + L GLNYGIDFKGG + + + ++ + + Sbjct: 7 KTKIWFAISLIVIVIGMSFLGVKGLNYGIDFKGGTIVTIEMGNSFN-QKIKEQADIIIKK 65 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 + + ++ DS + ++ +K K + + + + VGP + E Sbjct: 66 YDKTASSYIANKTQLEIKSNNLDSGSINKMFGELKTKYK--LKDNALVSQNKVGPSVGNE 123 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L +K + ++I+ IAMLIYI RF+ F + AI LI DI TLG +A+ I N +A Sbjct: 124 LKKKSLGALVIATIAMLIYIGFRFEIKFGVAAILGLIHDILITLGVYAVTQIPVNTPFIA 183 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT++GYS+ND +V++DR+R+N + ++++ SI +T+ RS+ T + +++ Sbjct: 184 AMLTIVGYSINDTIVIFDRIRENKRKL-RGKDMVEIVNLSITQTMSRSINTVLTTLFTIV 242 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + V+ + F P+ GIV A SSIF+++PI + + + Sbjct: 243 AVYVF-VPAVRDFTFPLIIGIVCGAYSSIFVSSPIWILLRKFGKNK 287 >gi|327393005|dbj|BAK10427.1| acriflavine resistance protein B AcrB [Pantoea ananatis AJ13355] Length = 1049 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 66/565 (11%), Positives = 156/565 (27%), Gaps = 46/565 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L L + ++++P+ P + ++ + Sbjct: 8 RPIFAWVLAIIVMLAGALSIL-----KLPIEQYPNVAPPA-------------IEIQANY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L + + + + S +T+SF + +V Sbjct: 50 PGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSDSSGALTLTISFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ D + + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGIQVKKSSSSFLMVAGFISDDGSMNQNDISDYVASNIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DPS+L T + N G Sbjct: 170 PGVGDTQVFGAQ-YAMRIWMDPSKLNNYQLTPVDVINALKTQNAQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTST-------------KEFGNILLKVNADGSQVRLRDVAQIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T E A L+ + Sbjct: 276 EIIARYNGKPASGIGIKLATGANALNTAEAVKAELAKLQPTFPAGMKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A++S G ++ ++ Sbjct: 336 SIFEVVKTLMEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMVEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +K + + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPVKKGDHGKTTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F ++ V Sbjct: 511 FFGWFNRLFDKSTHHYVDSVGHIVR 535 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 87/247 (35%), Gaps = 6/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + + +++ ++ K+ Sbjct: 258 SQVRLRDVAQIELGGENYEIIARYNGKPASGIGIKLATGANALNTAEAVKAELAKLQPTF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + + + + +++ + + L + + + Sbjct: 318 PAGMKVVYPYDTTPFVKISIFEVVKTLMEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ +S+ Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATKRSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 EQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT 495 Query: 823 IYDWRAK 829 + K Sbjct: 496 MLKPVKK 502 Score = 64.3 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L T + G L + IS I + + + ++ W Sbjct: 838 EAMNLMEELASKLPTGIGFDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L F L G+ ++ V +LT +G S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLFTTLRGLSNDVYFVVGLLTTVGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + VLP+A+ G + + G+V A + Sbjct: 958 G--LVEATLEACRMRLRPILMTSLAFILGVLPLAISTGAGSGAQNAVGTGVMGGMVTATA 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|332162560|ref|YP_004299137.1| aminoglycoside/multidrug efflux system [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666790|gb|ADZ43434.1| aminoglycoside/multidrug efflux system [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 1043 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 76/592 (12%), Positives = 164/592 (27%), Gaps = 46/592 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S ITL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + ++++ + + + D + Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT + N+ G D+ Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E A L + Sbjct: 276 DYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPHGLEAKIAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + S+ + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMSQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + A+ +K I Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIKPGHHHAKRG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 F R S+ + + L G I+L Sbjct: 511 FFGWFNRMFDRNAHRYERGVAQVLHRSVRYMLLYLLLLGGLALLFIKLPTSF 562 Score = 86.7 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 88/235 (37%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + +++ ++T P Sbjct: 260 VTLGDVAKIEMGAEKYDYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + + R+ KS+++ Sbjct: 380 FAILSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ +PMA +GG+ F+I + +V++ ++ + + Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 74.3 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRLRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029 >gi|15800191|ref|NP_286203.1| acridine efflux pump [Escherichia coli O157:H7 EDL933] gi|15829769|ref|NP_308542.1| acridine efflux pump [Escherichia coli O157:H7 str. Sakai] gi|168747862|ref|ZP_02772884.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4113] gi|168754567|ref|ZP_02779574.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4401] gi|168760383|ref|ZP_02785390.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4501] gi|168768417|ref|ZP_02793424.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4486] gi|168777158|ref|ZP_02802165.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4196] gi|168778955|ref|ZP_02803962.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4076] gi|168786313|ref|ZP_02811320.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC869] gi|168798026|ref|ZP_02823033.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC508] gi|195936025|ref|ZP_03081407.1| acridine efflux pump [Escherichia coli O157:H7 str. EC4024] gi|208806422|ref|ZP_03248759.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4206] gi|208814811|ref|ZP_03255990.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4045] gi|208823152|ref|ZP_03263470.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4042] gi|209396368|ref|YP_002269112.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4115] gi|217324468|ref|ZP_03440552.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. TW14588] gi|254791645|ref|YP_003076482.1| multidrug efflux system protein [Escherichia coli O157:H7 str. TW14359] gi|261223944|ref|ZP_05938225.1| multidrug efflux system protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256342|ref|ZP_05948875.1| multidrug efflux system protein [Escherichia coli O157:H7 str. FRIK966] gi|12513329|gb|AAG54811.1|AE005225_5 acridine efflux pump [Escherichia coli O157:H7 str. EDL933] gi|13359972|dbj|BAB33938.1| acridine efflux pump [Escherichia coli O157:H7 str. Sakai] gi|187767556|gb|EDU31400.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4196] gi|188017602|gb|EDU55724.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4113] gi|189003140|gb|EDU72126.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4076] gi|189357953|gb|EDU76372.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4401] gi|189362455|gb|EDU80874.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4486] gi|189369134|gb|EDU87550.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4501] gi|189373626|gb|EDU92042.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC869] gi|189379245|gb|EDU97661.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC508] gi|208726223|gb|EDZ75824.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4206] gi|208731459|gb|EDZ80147.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4045] gi|208737345|gb|EDZ85029.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4042] gi|209157768|gb|ACI35201.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. EC4115] gi|209778470|gb|ACI87547.1| acridine efflux pump [Escherichia coli] gi|209778472|gb|ACI87548.1| acridine efflux pump [Escherichia coli] gi|209778476|gb|ACI87550.1| acridine efflux pump [Escherichia coli] gi|217320689|gb|EEC29113.1| acriflavine resistance protein B [Escherichia coli O157:H7 str. TW14588] gi|254591045|gb|ACT70406.1| multidrug efflux system protein [Escherichia coli O157:H7 str. TW14359] gi|320192880|gb|EFW67520.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli O157:H7 str. EC1212] gi|326341228|gb|EGD65020.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli O157:H7 str. 1044] gi|326345997|gb|EGD69736.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli O157:H7 str. 1125] Length = 1049 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSIEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|310766812|gb|ADP11762.1| preprotein translocase subunit SecD [Erwinia sp. Ejp617] Length = 604 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 158/518 (30%), Positives = 278/518 (53%), Gaps = 37/518 (7%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + + + + LGLDLRGG H ++EVD D + D LRS L+++ I ++R Sbjct: 99 PAWLAMLSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYVNVR 158 Query: 93 QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + N + + F D + ++ +T + ++ + ++ V+S Sbjct: 159 KTANYGMEIRFRDDKARDEAVSYLTTRHR-----------DMVINGSGSNALTAVMSDER 207 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++LG TA Sbjct: 208 MREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATAT 267 Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V + G D ++ +V ++G H+ +T++ D Sbjct: 268 LEFRLVNTSVDATAAANGRVPGDSEVKNTRDKQPVVLYKRVILTGDHITDSTSSNDEYN- 326 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 +P V+IS D G T+D++GK +A + + Sbjct: 327 QPQVNISLDSAGGNIMSNFTKDSVGKAMATLFVEYKDSGKKDANGRAILEKHEEVINVAN 386 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q+ +I+G A L+ +LRAG+L + IVEER +G +G+ +I +G A Sbjct: 387 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEAC 446 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GL+ ++FM+V Y K+GLVA ++ N++L + ++SLL ATLT+P IAGIVL + +A Sbjct: 447 LWGLIASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA 506 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI ++L+ G G+++G Sbjct: 507 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 566 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 FAIT + + SMFTAI RA++ + K++ + I Sbjct: 567 FAITTAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI 604 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 96/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ N ++ L G + + + Sbjct: 358 FVEYKDSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ + +K F L A + L+ ++ Sbjct: 418 LIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK-KFGLVATSALLANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ S + I + Sbjct: 477 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 V ++ I V+ + G I FAI A G+ + ++I I+ + Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLM 593 Query: 824 YDWRAKNA 831 Y + N Sbjct: 594 YGGKRINK 601 >gi|294491588|gb|ADE90344.1| acriflavine resistance protein B [Escherichia coli IHE3034] Length = 1049 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLATFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 74.3 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 ATFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|157146913|ref|YP_001454232.1| hypothetical protein CKO_02689 [Citrobacter koseri ATCC BAA-895] gi|157084118|gb|ABV13796.1| hypothetical protein CKO_02689 [Citrobacter koseri ATCC BAA-895] Length = 1048 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 68/685 (9%), Positives = 173/685 (25%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMDPTKLNNFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + I Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNQDGSQVRLRDVARIELGGENYDIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + S Sbjct: 280 KFNGQPASGLGIKLATGANALDTANAIRAELKKMEPFFPSGMKIVYPYDTTPFVTISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLSAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGSHGSTKGFFGWFNNMF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + + I+ + + + +G Sbjct: 520 EKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLSMAQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + ++ + + E F V G +K Sbjct: 580 GATQERTQKVLDEMTDYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGD 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 640 ENKVDAITGRAMGAFSQIKDAMVFA 664 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + DI + + L +++ + KK+ Sbjct: 258 SQVRLRDVARIELGGENYDIIAKFNGQPASGLGIKLATGANALDTANAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGMKIVYPYDTTPFVTISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLSAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.9 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 898 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|320176564|gb|EFW51608.1| RND efflux system, inner membrane transporter CmeB [Shigella dysenteriae CDC 74-1112] Length = 1049 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 70/690 (10%), Positives = 177/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIF-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|126658187|ref|ZP_01729338.1| cation or drug efflux system protein [Cyanothece sp. CCY0110] gi|126620558|gb|EAZ91276.1| cation or drug efflux system protein [Cyanothece sp. CCY0110] Length = 1041 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 80/595 (13%), Positives = 178/595 (29%), Gaps = 42/595 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + + +I +GL+ LD+FP P + + +E Sbjct: 9 KRPVFSSVCALLILLVGLISLF-----NLPLDQFPEIAP-------------TRVQVEST 50 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 + ++ + L + I S + IT++F SR + A V Sbjct: 51 YNGASAEVVENAVTNILERQINGVEGLKYISSSSSNSGTSSITVTFDSSRDPDLAAVDVQ 110 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + V S+L ++ + + + + ++ D + S + +D + Sbjct: 111 NQVSVVQSQLPDAVQRTGVQVSRQSDSLLLGIGLYSDNNRYDNVFLSNYADQYLVDALKR 170 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + DP++L TT + N G + Sbjct: 171 LDGVGNVRIFGERRYAMRLWLDPNKLASRGLTTQDVVNALSEQNLQVGAGKIGAEPAPEG 230 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ + ++ + + + + + Sbjct: 231 QQFQFDLRAISQL-------------KEPKEFENLLLKTDENGGLVYFKDVGRAELGAED 277 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + + L P +V Sbjct: 278 YSSFLRFRGQEAVGMGIYQRTGSNALEVAKKVEQEMDRLSEFFPPDLQYVVAFDTTQFVE 337 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S S T + GLV+IV+ + + + L+ +I L ++ T A + L ++ + Sbjct: 338 ESLSEVVKTLIMAVGLVIIVILIFLQNWRTTLIPALTIPLALVGTFAFIKLFDFSINSLT 397 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL--DMGFSRAYSTIFDSNITALIAT 474 + G+ L G+ VD I+V E+I + + + I S + + Sbjct: 398 LFGLTLATGMVVDDAIIVVEQINRYIEDEDMSPQAAASKAMGELSSAVIATSLVLMAVFI 457 Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 V FF G R FA+T+ SI+IS F A+++ ++ ++ + + + F Sbjct: 458 PVAFFPGTTGALYRQFALTIAFSIVISTFLALTLTPSLCALLLEKGQQ--LPGFLGTIFN 515 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + R +S L + + + + K ++ Sbjct: 516 QFNHFLDWVKAQYRRSLHTLSNLRLVVVGVFVVLLLVTAWLYTKVPTAFTPEEDQ 570 Score = 87.4 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 8/223 (3%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 Q G + + + ++ + + + +T + E+++ Sbjct: 287 QEAVGMGIYQRTGSNALEVAKKVEQEMDRLSEFFPPDLQYVVAFDTTQFVEESLSEVVKT 346 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 I+ V + I +LI++ W L T+ L + T F LF N + + Sbjct: 347 LIMAVGLVIIVILIFLQ---NWRTTLIPALTIPLALVGTFAFIKLFDFSINSLTLFGLTL 403 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 G V+D ++V +++ N + +S + K++ E + TS+ +P+A Sbjct: 404 ATGMVVDDAIIVVEQI--NRYIEDEDMSPQAAASKAMGELSSAVIATSLVLMAVFIPVAF 461 Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + G+ FA+ +AF IV++ ++ + + + + Sbjct: 462 FPGTTGALYRQFALTIAFSIVISTFLALTLTPSLCALLLEKGQ 504 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 6/140 (4%) Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 I + L I L L G ++ ++ LIG + + +++ + +L Sbjct: 898 PFIIILAVPLAILGALTAQLLRGFANDVYCQIGLVMLIGLASKNAILIVEFAN---QLRD 954 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809 + ++ E L + T+++ + + P+ V G S + G++VA+ Sbjct: 955 EGLPLVKATIEAAQERLRPILMTAVSTLLGIFPLVVATGAGSGSRQSLGTAVFGGMLVAS 1014 Query: 810 SSSIFIAAPILLFIYDWRAK 829 S+F+ + + I K Sbjct: 1015 FLSLFVVPILYIVIKMTTEK 1034 >gi|171057036|ref|YP_001789385.1| preprotein translocase subunit SecF [Leptothrix cholodnii SP-6] gi|170774481|gb|ACB32620.1| protein-export membrane protein SecF [Leptothrix cholodnii SP-6] Length = 344 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 158/324 (48%), Gaps = 27/324 (8%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS L ++ L T GL+ I+F GG + + D Sbjct: 1 MEFFRFRRDIPFMRHALVFNVISFLTFAAAVFFLITRGLHLSIEFTGGTVIETEYAQSAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG------------------------ 626 ++ VR +E++ +G++ Q F ++ L+RL + G Sbjct: 61 IARVRGTIETMGLGEVQVQKFGTSRDVLIRLPLREGVKQNELVGRVFTQLCTAEQGTVSQ 120 Query: 627 --DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 + + + + + +E VGP++ +EL G + + ++IY+ Sbjct: 121 QQTTTDKGETISRQVCQTAAGAEPLKLSRSEFVGPQVGKELAEDGAKALAFVIVGIMIYL 180 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 +RF+W FA+ AI + D+ LGFFA F EF+L+ +AAVL ++GYSVN+ VV++DR+ Sbjct: 181 ALRFEWKFAVAAIIANLHDVIIILGFFAYFQWEFSLSVLAAVLAVLGYSVNESVVIFDRI 240 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804 R+ + Y ++ ++ID +I T+ R++ T + + VL M ++GG + FA+ + G Sbjct: 241 REAFRRYRK-MTTVEVIDHAITSTMSRTIITHGSTQMMVLSMLLFGGPTLHYFALALTIG 299 Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828 I+ SS+F+AA I +++ R Sbjct: 300 ILFGIYSSVFVAAAIAMWLGVKRE 323 >gi|332188473|ref|ZP_08390195.1| export membrane protein SecF [Sphingomonas sp. S17] gi|332011485|gb|EGI53568.1| export membrane protein SecF [Sphingomonas sp. S17] Length = 326 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 97/289 (33%), Positives = 165/289 (57%), Gaps = 2/289 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L+PD I F+R R W G+++ ++ ++ + F GLN G+DF GG+ + Sbjct: 1 MRLLKLVPDNTNIDFVRLRGWAFGLTLALTLLAVGVTFARGLNLGVDFVGGLMIEEKFPT 60 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG-DSVAQTRVLEMVKKKITEIV 646 P VRS ++ L +G+ + Q + +RL D A V+ V+ + + Sbjct: 61 PPSADRVRSVVDGLGVGEANIQTVGDGRTISIRLPVPESKDEGATNAVVRKVEAALGQQF 120 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 P +T + V K+S ELI+ G++ V+++ + + ++ RF+W F + I ++ D+ Sbjct: 121 PGATFSRYDTVSGKVSGELIKHGVLAVVLAILGIGLFAIFRFEWQFGVSTIVAIVHDLLV 180 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 TLGFFA+ E +LT +AA LT+IGYS+NDK+V+ DR+R+NM+ Y + R++I+ S+N Sbjct: 181 TLGFFAITQFELDLTIIAAFLTIIGYSINDKIVIDDRIRENMRRYRK-MDMREIINLSVN 239 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 ETL R+V TS+ +++ + + GG V+ F M GIVV SSI++ Sbjct: 240 ETLPRTVMTSVTILLALTALLLLGGHVLRGFTAAMILGIVVGTYSSIYV 288 >gi|261823345|ref|YP_003261451.1| aminoglycoside/multidrug efflux system [Pectobacterium wasabiae WPP163] gi|261607358|gb|ACX89844.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pectobacterium wasabiae WPP163] Length = 1036 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 78/689 (11%), Positives = 183/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L L+++P P + + Sbjct: 8 RPIFAWVLAILLSLCGMLAI-----KSLPLEQYPDLAPP-------------SVRITASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +I L+F + +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLMYMSSDSSNTGQARIMLTFEAGTDPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + +I++ + S + + I Sbjct: 110 QLQSATRKLPQDVQQQGVTVSKTGDTNILMVAFVSTDGSMDKQDISDYVATNIQEPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L TT+ + N+ G D+ Sbjct: 170 SGVGEVDSYGSQ-YAMRIWLDPAKLMDYALTTSDVVRAIESQNSQVSVGQVGGVPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSAVTLANVAEVELGSERY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DFLSRFNGQAASGLGVKLASGANELETDKRVRERIEELSQYFPHGLEAKIAFETSPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G +L ++ Sbjct: 336 SITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGFSLNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPRDATRKSMGQVQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F++T+ S+++S+ A+ + A+ +++ + Sbjct: 456 MAFFGGTTGAIYRQFSVTIVTSMILSVLVAMILTPALCATLLKPLAKGQHPGRKGFFGWF 515 Query: 534 IPDCIAIQFMRAR----------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 R W + + I + + +G V Sbjct: 516 NRSFTRTSLGYERGVGKILVNSGRWLLLYMGIIGIMAFLFFRLPTSFLPQEDRGVFTTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + ++ ++ + F G+ R+ +K Sbjct: 576 QLPPGSTQQQTLQVVNKIEQYYLTQEKDTVTSVFSTIGSGPGGNGQNVARLFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 P S+ K R + + Sbjct: 636 RTTPESSSFAVIERATKEFRAIKEARVFA 664 Score = 78.6 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L+ V + D + + L + + + + +++++ P Sbjct: 260 VTLANVAEVELGSERYDFLSRFNGQAASGLGVKLASGANELETDKRVRERIEELSQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAFETSPFVKASITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + +S RD KS+ + Sbjct: 380 FAVLYAFGFSLNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPRDATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +GG+ F++ + ++++ ++ + + + Sbjct: 438 VQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVTSMILSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 65.1 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 8/167 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G + L + IS + + + + ++ W + + + + L Sbjct: 853 FGVEWTGMSLQERLSGAQAPALYAISLLVVFLCLAALYESWTVPFSVMLVVPMGVLGALV 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 G+E ++ +LT++G S + +++ + + + + ++ + L Sbjct: 913 ATWARGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---MNQKGKDLVEATLEASRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A VLPMA G + + + G++ A +I Sbjct: 970 RPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVIGGMLAATFLAI 1016 >gi|218511369|gb|ACK77685.1| multidrug resistance efflux pump [uncultured bacterium] Length = 1048 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 66/574 (11%), Positives = 160/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIVMLAGVLAIM-----KLPIAQYPTIAPPA-------------VSISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQIIEQNMNGIDNLMYMSSTSDSSGSVTITLTFDSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ L ++++ D + + + D I S Sbjct: 110 KLSLATPLLPQEVQQQGLKVEKSSSSFLMVAGFVSDDPNMTQDDIADYVASNIKDPISRS 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L TT ++ NN G Sbjct: 170 SGVGEVQLFGAQ-YAMRIWLDPNKLNNYQLTTTDVTSAITEQNNQIAAGQLGGLPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + +I + Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGKILLKVNTDGSQVRLRDVAHIERGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A + + Sbjct: 276 AVTARYNGKPAAGLGIKLATGANALNTAKGVKDELAKMAPFFPQGMKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +K I Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPIPKGDHGVKTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F ++ + L + Sbjct: 511 FFGWFNRMFEKSTHHYTDSVGNILRSTGRYLIIY 544 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + ++ + L +++ + ++ K+ Sbjct: 258 SQVRLRDVAHIERGAESYAVTARYNGKPAAGLGIKLATGANALNTAKGVKDELAKMAPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + I + + +++ + + L + + + Sbjct: 318 PQGMKVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.2 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS + + + + ++ W Sbjct: 838 EAMNLMEQLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISILVVFLCLAALYESWSVP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + L L + L + G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVLPLGVIGALLAATMRGMNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + VLP+ + G + + G++ A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|17230635|ref|NP_487183.1| RND multidrug efflux transporter [Nostoc sp. PCC 7120] gi|17132238|dbj|BAB74842.1| RND multidrug efflux transporter [Nostoc sp. PCC 7120] Length = 1057 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 83/686 (12%), Positives = 195/686 (28%), Gaps = 43/686 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + + +I +G + P DR+P P + + Sbjct: 8 RRPVFTSVCAIIILLVGAISI-----PTLPTDRYPEISPTQIV---------VNANYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120 + V + + + ++ S + IT++F SR K+ A V + Sbjct: 54 SAEVVENTVTNILERQINGVQGMKYMTSSSSNDGTSTITITFDPSRDKDIAAVDVQNRVS 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +L ++ + + + ++ +Q + + S + +D + + Sbjct: 114 IAQPQLPEAVQRTGVTVSKQSNNILLAMGLYSEQQEYNTVFLSNYADQYIVDALKRLDGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + + DP+RL T + N G + Q Sbjct: 174 GEARIFGERRYAMRLWLDPNRLASRKLTAQDVIDAINEQNIQVGVGQIGQQPSLPDQMYQ 233 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 ++ + +S + + + Sbjct: 234 IDLQARGRLS-------------EATEFADMVIKTGSDGTLIKLKDVGRAELGAENYSSF 280 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + A L P V S + Sbjct: 281 LRFRGNEGVGIGIFPTPGSNALEVSKAVKTEMARLAQSFPPGLKYQVAFDTTLFVEESLA 340 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV++V+F+ + + L+ +I L +I T A + + G ++ ++ G+ Sbjct: 341 EVVKTLIEALILVVLVIFIFLQDWRTTLIPVITIPLTLIGTFAFIKVFGFSINTLTLFGL 400 Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 L GL VD I+V E I ++ S + + + +++ + V + F Sbjct: 401 TLATGLVVDDAIIVVENISRLIEQEGMSPRQAASESMRELFGAVIATSLVLMAVFVPVAF 460 Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---------IDINP 527 F G + FA+T+ S++IS F A+++ ++ ++R + ++ Sbjct: 461 FPGTTGQIYKQFALTIAFSMVISTFLALTLTPSLSALLLRRGQRPRGWLGKIFHQVNRFL 520 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + ++ L + +G + Sbjct: 521 DWMRRGYERSLNFLVKVRAIVVLLFLASIALTGWVYLSVPTAFIPEEDQGYFITIIQGPE 580 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V L+ + + ++ + G F + G+S + ++ P Sbjct: 581 GVSLNYTSNVMAQVEKEILKLPEVTG--TFAIGGFSFSGNSANSGVIFTTLQPWDERQQP 638 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673 + + + I V Sbjct: 639 GQSAPEIIGKLAGVFSNITEARIFPV 664 Score = 94.0 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 93/247 (37%), Gaps = 6/247 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L V + + E + +++ ++ ++ ++ + P Sbjct: 262 IKLKDVGRAELGAENYSSFLRFRGNEGVGIGIFPTPGSNALEVSKAVKTEMARLAQSFPP 321 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707 E + + + +I + I +++ I+I W L + T+ L + T Sbjct: 322 GLKYQVAFDTTLFVEESLAEVVKTLIEALILVVLVIFIFLQDWRTTLIPVITIPLTLIGT 381 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 F +FG N + + G V+D ++V + + + + +S R +S+ E Sbjct: 382 FAFIKVFGFSINTLTLFGLTLATGLVVDDAIIVVENI--SRLIEQEGMSPRQAASESMRE 439 Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + TS+ +P+A + G + FA+ +AF +V++ ++ + + + Sbjct: 440 LFGAVIATSLVLMAVFVPVAFFPGTTGQIYKQFALTIAFSMVISTFLALTLTPSLSALLL 499 Query: 825 DWRAKNA 831 + Sbjct: 500 RRGQRPR 506 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 77/207 (37%), Gaps = 11/207 (5%) Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 S T +E + K++ + + + + + + + + Sbjct: 834 SSGQATTAMEKLAKEVLPASMGYEWSGITAEEQESGG----QAPLIFGLGLVFVFLVLAA 889 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 +++ + L + ++ L I L L G+ ++ ++ LIG + + +++ + Sbjct: 890 QYENYVDPLIIMLSVPLAILGALSAQWLRGLSNDVFCQVGLVMLIGLASKNAILIVEFAN 949 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMA 802 +L + ++ E L + TS++ + V P+ G + S + Sbjct: 950 ---QLREGGLPIIKATVQASQERLRPILMTSLSFILGVWPLINPIGAGAASRKSLGTAVV 1006 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829 G++V+ S+F+ + + I R + Sbjct: 1007 GGMIVSTVLSLFVVPILYIVISKIRDR 1033 >gi|323170558|gb|EFZ56208.1| inner membrane protein [Escherichia coli LT-68] Length = 1049 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSIEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|303249153|ref|ZP_07335392.1| protein-export membrane protein SecF [Desulfovibrio fructosovorans JJ] gi|302489426|gb|EFL49374.1| protein-export membrane protein SecF [Desulfovibrio fructosovorans JJ] Length = 365 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 154/346 (44%), Gaps = 48/346 (13%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVDL 591 LI I F++ R +S + L G YG+DF GG+ + V + +D+ Sbjct: 5 LIRPGTKINFLKYRKLAYLVSAAVIVAGFVSLAVKGGPRYGVDFAGGLSIQVRFAKAMDV 64 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK-ITEIVPLST 650 + + ++ + +++ Q F + ++ D + + Sbjct: 65 AELTKAADAAGLSNVAVQRFGQAEANEYLIRASDQDINQENVRTAVETALGKAFPNAGLD 124 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF---------------------- 688 +Q E+VGPK+ +L K + + S + + IYI RF Sbjct: 125 VQRLEMVGPKVGADLRGKALEAIFYSVLLIAIYISGRFEKRWMAAGMMAAGLAGGIYVLK 184 Query: 689 ------------------------KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 + +ALGA+ + D T+G F+L EF+LT VA Sbjct: 185 LFGASTVWLIVAAMIITMALCYVLRLKYALGAVVADLHDALITIGLFSLLDKEFDLTIVA 244 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT++GYS+ND ++VYDR+R+ + ++ F +I+ SINETL R++ T+ I+V Sbjct: 245 ALLTILGYSLNDTIIVYDRIREKNRNVGKTLPFEQVINISINETLSRTILTAGTTLITVA 304 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + +GG+VI FA+ M GI+ SSIF+A+PILL + Sbjct: 305 CLYFFGGAVIHDFALAMLIGILAGTYSSIFVASPILLDLGSGLKPR 350 >gi|301644459|ref|ZP_07244456.1| putative ATP synthase F0, A subunit [Escherichia coli MS 146-1] gi|301077204|gb|EFK92010.1| putative ATP synthase F0, A subunit [Escherichia coli MS 146-1] Length = 1037 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTMTQVIEHNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ ++ Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 Score = 68.9 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + + + L + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +I+ + + R Sbjct: 993 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|315928005|gb|EFV07325.1| protein-export membrane protein SecF [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 262 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 130/233 (55%), Gaps = 3/233 (1%) Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + +R LE+ G + G + + + + + + Sbjct: 1 TQIREILENQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEV 58 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + ++VGPK+ EL KG++ + +S IA+LIYI +RF+W FAL AI + I D+ TLG Sbjct: 59 RRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAI 118 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +LF I+ NL +AAVLT++GYS+ND ++++DR+R+ +K + +I++S++ TL R Sbjct: 119 SLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSR 177 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +V TS +V+ + +GG +I F++ + GI+ SSIF+A+P LL+ Sbjct: 178 TVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPTLLWFK 230 >gi|226194757|ref|ZP_03790349.1| outer membrane efflux protein OprC [Burkholderia pseudomallei Pakistan 9] gi|225933101|gb|EEH29096.1| outer membrane efflux protein OprC [Burkholderia pseudomallei Pakistan 9] Length = 1576 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 68/548 (12%), Positives = 154/548 (28%), Gaps = 31/548 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I G++ + +P +P + I Sbjct: 10 RPIFAGVLSVIILLAGMIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + +E + ++ N IT++F + V + Sbjct: 56 PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 +L D ++ + T ++ + D++ + Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPNDSYDMTYLRNYALINVKDRLSRIQGVG 175 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 Q + DP ++ Q T + N + G Q Sbjct: 176 QVQLWGAGDYAMRVWLDPQKVAQRNLTADDVVRAIREQNVQVAAGVIGASPTLPGTPLQL 235 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + + I + Sbjct: 236 SVNARGRLQNED-------------EFGDIVVKTAPDGGVTHLRDIARIELDASEYGLRS 282 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L + + + A L+ + S Sbjct: 283 LLDNKPAVAMAINQSPGANSLAISDEVRKTMAELKQDFPAGVDYRIVYDPTQFVRSSIKA 342 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV+IV+ + + + ++ ++ ++++ T +LL L G ++ S+ G+V Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLLFGYSINALSLFGMV 402 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480 L IG+ VD I+V E + + + I +T + V L F Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLTARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462 Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G + FA+T+ +S +IS F ++++ A+ +++ K + + L Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522 Query: 539 AIQFMRAR 546 + R Sbjct: 523 GFNKVFHR 530 Score = 56.6 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L I + + I L L + N+ ++ L+G S + +++ + R+ Sbjct: 902 SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L + + ++ L + TS+A + V+P+ + G + + + + FG+ Sbjct: 960 -LEHDGKTPFEAAVEASRLRLRPILMTSIAFIMGVVPLVLSTGAGAEMRHAMGVAVFFGM 1018 Query: 806 V 806 + Sbjct: 1019 L 1019 Score = 51.2 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 89/253 (35%), Gaps = 12/253 (4%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + V ++ +R + V + + + V+K Sbjct: 252 IVVKTAPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLAISDEVRK 311 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695 + E+ + + +R I V+ + + A+ + + W ++ Sbjct: 312 TMAELKQDFP-AGVDYRIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 + + + I T LFG N ++ ++ IG V+D +VV + + +N+ + Sbjct: 371 PLIAVPVSIVGTFSLLLLFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGL 427 Query: 756 SFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIVVAASSS 812 + R K++ E G + ++ A L G FA+ +A V++A +S Sbjct: 428 TARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNS 487 Query: 813 IFIAAPILLFIYD 825 + ++ + + Sbjct: 488 LTLSPALSAILLK 500 >gi|187730157|ref|YP_001879172.1| acriflavine resistance protein B [Shigella boydii CDC 3083-94] gi|187427149|gb|ACD06423.1| acriflavine resistance protein B [Shigella boydii CDC 3083-94] Length = 1049 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAIVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|114798600|ref|YP_760626.1| protein-export membrane protein SecF [Hyphomonas neptunium ATCC 15444] gi|114738774|gb|ABI76899.1| protein-export membrane protein SecF [Hyphomonas neptunium ATCC 15444] Length = 329 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 97/307 (31%), Positives = 164/307 (53%), Gaps = 17/307 (5%) Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 P I FMR R+ GV +S++ + S+ L+ T GLN G+DF GG + + V ++ Sbjct: 6 WPTETKIPFMRYRYVGVVLSVIMMVASVYLVMTRGLNLGVDFAGGSVVELRQTDSVTVAD 65 Query: 594 VRSNLESLQIGDISFQNFD----------------GEKNFLVRLQYQPGDSVAQTRVLEM 637 VR + + + + G + + + + + A + + Sbjct: 66 VRDRIPGGLTVNSATDSNGAELVVIRFGEVDASLLGPEFAELTDEEKADRASAASNTFVV 125 Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 K + I + VGPK+S EL R+G++ + ++ I M +YI R+ W +A+G I Sbjct: 126 NTLKQEFGLTDQDILRNDSVGPKVSGELFREGLIALGVATIMMFLYIAFRYSWSYAVGGI 185 Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757 LI D T+G F+L I+F+LT +AA+LT+IGYSVND VVV+DR+R+ + Y + Sbjct: 186 AALIHDAIGTIGLFSLLQIQFDLTTIAALLTIIGYSVNDSVVVFDRIREIRRKY-KQMPA 244 Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817 ++ID + N+TL R+ T I++L +A++GG V+ ++ M +GI++ SSI+ AA Sbjct: 245 TEVIDIATNQTLSRTFLTGGTTLIAILAIAIFGGPVLQGMSVAMIWGIIIGTYSSIYFAA 304 Query: 818 PILLFIY 824 I+L + Sbjct: 305 AIVLMLG 311 >gi|27379845|ref|NP_771374.1| preprotein translocase subunit SecF [Bradyrhizobium japonicum USDA 110] gi|27352998|dbj|BAC49999.1| protein-export membrane protein [Bradyrhizobium japonicum USDA 110] Length = 339 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 116/295 (39%), Positives = 189/295 (64%), Gaps = 6/295 (2%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-D 590 ++PD F R R IS SI +I L FTHGLN GIDFKGG L V A D Sbjct: 29 RIVPDNTHFDFTRFRRISFPISAALSIVAITLFFTHGLNLGIDFKGGTLLEVRAKSGAAD 88 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +R+ L+ L++G++ Q F G +N L+R+ QPG AQ ++ V+ + Sbjct: 89 IAAMRTTLDGLRLGEVQLQQFGGPENVLIRVAEQPGGDTAQQEAVQKVRTAL---GDSIE 145 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + E++GP+++ EL+ G++G++++ +A+LIY+W RF+W FALGA+ + DI T+GF Sbjct: 146 YRRVEVLGPRVAGELLAYGMLGLMLAIVAILIYLWFRFEWQFALGAMIANVHDIVLTIGF 205 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 ++ ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y + L+++SIN TL Sbjct: 206 MSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLS 264 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824 RS+ T + +++L + ++GG I SF M FG ++V +SIFIAAPIL+++ Sbjct: 265 RSIITHVTVTLALLALLLFGGHAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 319 >gi|206576097|ref|YP_002240037.1| acriflavine resistance protein B [Klebsiella pneumoniae 342] gi|290510154|ref|ZP_06549524.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Klebsiella sp. 1_1_55] gi|206565155|gb|ACI06931.1| acriflavine resistance protein B [Klebsiella pneumoniae 342] gi|289776870|gb|EFD84868.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Klebsiella sp. 1_1_55] Length = 1048 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 68/689 (9%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLSIL-----KLPVAQYPTIAPPA-------------ISITAMY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117 +Q + + ++ + ITL+F + +V Sbjct: 50 PGADAETVQNTVTQVIEQNMNGIDHLMYMSSNGDSTGTATITLTFESGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ + +++ + + S + D I + Sbjct: 110 KLALATPLLPQEVQQQGISVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISALKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTNTE-------------EFGNILLKVNQDGSQVRLRDVAKIELGGESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFFPSGMKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +++ + S + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGSHGATTGFFGWF 515 Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + V I+ + + + +G Sbjct: 516 NRMFDKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAWLFVRLPSSFLPDEDQGVFLSMA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + ++ + + E F V G +K Sbjct: 576 QLPAGATQERTQKVLDEMTNYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 636 RPGEENKVEAITGRAMGYFSQIKDAMVFA 664 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + K+ Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMSLMEELAGKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|299769058|ref|YP_003731084.1| probable rnd superfamily protein [Acinetobacter sp. DR1] gi|298699146|gb|ADI89711.1| probable rnd superfamily protein [Acinetobacter sp. DR1] Length = 1037 Score = 200 bits (507), Expect = 8e-49, Method: Composition-based stats. Identities = 82/693 (11%), Positives = 207/693 (29%), Gaps = 49/693 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I +G + L ++++P P G ++ + Sbjct: 9 RPIFAWVLSICIMALGTISIL-----TLPIEQYPDIAPP-----------GVNVT--ANY 50 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ L +K S Q +I+LSF + + +V Sbjct: 51 PGASAKTVEDSVTQILEQQIKGIDGLLYFSSSSSSAGQARISLSFDQNTNPDTAQVQVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + S+L + ++ + T + S+++ + +++ S ++ D + Sbjct: 111 AVNQALSRLPQEVQQQGITVTKSQGDSLLVFALYDESGTRSSVDISDYMVSTLQDPLSRV 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L + + N G RD Sbjct: 171 DGVGEITVFGAQ-YAMRIWLDPHKLNSYGLMPSDVRTAIEAQNTQITAGELGALPTRDGQ 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + I + + + Sbjct: 230 ALNATVTALSRL-------------QTVSQFENIILRTQTNGAVVLLKDVARVERGAESY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + + + T E L A + Sbjct: 277 QTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEA 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T A LV+IV+F+ + + L+ ++ + ++ T +LS+LG ++ ++ Sbjct: 337 SVNGVIKTLAEAIVLVIIVMFLFLQSWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTL 396 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + +N + + + + + Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMHEQNVDARQATLISMKEISGALVGIAMVLAAVFLP 456 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F++T+ ++++S A+++ A+ +++ K + F Sbjct: 457 MAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLLKPANEKHKQRKFFTWFNR 516 Query: 534 IPDCIAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + + + + + + + ++ + + +G + + Sbjct: 517 KVEQGQSGYRTKLVAVLGKPKIFMIIFVGITALLGWQYTRMNTGFLPQEDQGSVMVQFST 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 L+ + ++ + + F+V + G +K Sbjct: 577 PVGTTLAETERVGNQIADYFLTKEKDNLNVIFMVMGRNNAGSGQNVGMAFAGLKHWDDRE 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 +T + + L + + +A+ Sbjct: 637 GSENTAEAVIARANAHFKSLRNARVQVLSPAAV 669 Score = 78.6 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 84/210 (40%), Gaps = 8/210 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + + + + + ++ +++ +I+ +++ I M +++ Sbjct: 302 ETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEASVNGVIKTLAEAIVLVIIVMFLFLQ 361 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + T G ++ G N + A++ IG V+D +VV + + Sbjct: 362 ---SWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTLFAMVLAIGLLVDDAIVVVENV- 417 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 ++ ++ R S+ E G V +M LPMA +GGSV F++ + Sbjct: 418 -ERVMHEQNVDARQATLISMKEISGALVGIAMVLAAVFLPMAFFGGSVGIIYRQFSVTLV 476 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +V++A ++ ++ + + + + Sbjct: 477 SAMVLSAIVALTLSPALCATLLKPANEKHK 506 Score = 75.9 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 9/209 (4%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIISAIAML 681 Q S A K+ ++V N + G +L + I + S I + Sbjct: 822 VQLQGSAATGESSGGAMDKMQQLVDQQQGFNLQWSGLSYQEKLAGGQTIWLYLASIIFIF 881 Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 + + ++ W + + + L + + +L G ++ A+LT IG S + +++ Sbjct: 882 LCLAALYESWSIPVSVMLVIPLGLIGAVVAASLAGFVNDIYFQVAMLTTIGLSAKNAILI 941 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797 + + D I + + L + TS+A VLP+AV G Sbjct: 942 VEFA---AAKLEAGQALMDAIIEGAGQRLRPIIMTSLAFVAGVLPLAVSTGAGAVSRKEI 998 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826 I + G++ SIF P+ + Sbjct: 999 GIAVTGGMISGTLLSIFFV-PLFFLLVRR 1026 >gi|283832147|ref|ZP_06351888.1| inner membrane multidrug efflux protein BpeB [Citrobacter youngae ATCC 29220] gi|291071779|gb|EFE09888.1| inner membrane multidrug efflux protein BpeB [Citrobacter youngae ATCC 29220] Length = 1037 Score = 200 bits (507), Expect = 8e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATVTLSFVAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPDQFRDITLRVNQDGSEVKLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T L V Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATATLVINRLNELSQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L ++ +G + Sbjct: 516 NRMFNRNAERYEKGVARILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEEVEKYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K ++ + Sbjct: 636 RDTTTGTSFAIIERATKAFNKIKEARVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++++ P Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATATLVINRLNELSQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 65/186 (34%), Gaps = 8/186 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E L + IS + + + + ++ W + + L + L Sbjct: 853 FGLEWTAMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALL 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + + D + + L Sbjct: 913 ATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNEKGHDLLDATLHACRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMAISNGAGSGGQHAVGTGVMGGMLSATILAIFFVPLFFVLVRRR 1029 Query: 827 RAKNAR 832 + Sbjct: 1030 FPLKPK 1035 >gi|259907791|ref|YP_002648147.1| aminoglycoside/multidrug efflux system [Erwinia pyrifoliae Ep1/96] gi|224963413|emb|CAX54901.1| Acriflavine resistance protein B [Erwinia pyrifoliae Ep1/96] Length = 1037 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 76/689 (11%), Positives = 187/689 (27%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L + ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGGLAIV-----SLPIEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TL+F + +V Sbjct: 50 PGASAETLENTVTQVIEQNMTGLDNLMYMSSQSSHTGQATVTLTFEAGTNPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D + + + +I++ + + + D + Sbjct: 110 QLQTALRKLPQDVQAQGVNVNKTGDTNILMVAFVSTDGSMDKQDIADYVASHLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q + P++L TT ++ N+ G D Sbjct: 170 NGVGQVDAYGSQ-YAMRIWLGPNKLINYALTTTEVVDAIKSQNSQVAVGQLGGLPSVDRQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + I Sbjct: 229 ALNATINSQSLL-------------QTPEQFRAITLRVNADGSVVTLGQVARIELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T L + Sbjct: 276 DYLSRYNGMAASGLGIKLASGANELQTDTLVRARLDELSRFFPHGLKAEIAFETSPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + + T +L G ++ ++ Sbjct: 336 SIEDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPRDATRKSMGQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCCTLLKPLAMGHHHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + ++ W V L ++ ++ + ++ +G V Sbjct: 516 NRTFNHNAERYKRGVGRMLVKGGRWLVVYLALIAVMALLFMRLPTSFLPLEDRGLFTTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L + +E ++ ++ + + + F G+ R+ +K Sbjct: 576 QLPPGSTLQQTMTVVEKVEHYYLTHEQDNVQSVFATVGAGPGGNGQNVARLFVRLKDWQN 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + +T K + +V Sbjct: 636 RLGSDNTSFAIIDRATKAFSRINEAKVVA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + L + + ++ +++ P Sbjct: 260 VTLGQVARIELGAEKYDYLSRYNGMAASGLGIKLASGANELQTDTLVRARLDELSRFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + + +++ + + L + + + T Sbjct: 320 GLKAEIAFETSPFVKASIEDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G FG N + A++ IG V+D +VV + + + +S RD KS+ + Sbjct: 380 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPRDATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +GG+ F++ + +V++ ++ + + + Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCCTLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 72.0 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 76/212 (35%), Gaps = 8/212 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G+S A + + L + G + + + +S + + + + Sbjct: 827 GESAAGVSNGAAMDMMEKLVSQLPNGIGLQWTGASLQERMTGAQAPALYALSLLVVFLCL 886 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L L G+E ++ +LT++G S + +++ + Sbjct: 887 AALYESWSIPFSVMLVVPLGVLGALIATWLRGLENDVYFQVGLLTVVGLSAKNAILIVEF 946 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + + + ++ + L + TS+A VLPMA+ G S + Sbjct: 947 ANE---INSRGSELMAATLEASRQRLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTG 1003 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + G++ A +IF + + + Sbjct: 1004 VLGGMISATVLAIFFVPLFFVLVRRRFPLKDK 1035 >gi|89073891|ref|ZP_01160398.1| AcrB/AcrD/AcrF family protein [Photobacterium sp. SKA34] gi|89050426|gb|EAR55927.1| AcrB/AcrD/AcrF family protein [Photobacterium sp. SKA34] Length = 1043 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 71/692 (10%), Positives = 180/692 (26%), Gaps = 52/692 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + + ++PS P +V+ Sbjct: 8 RPIFAWVIAIIVMLAGVLSII-----KLPVSQYPSIAPPT-------------VVISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S +ITL+F + +V Sbjct: 50 PGANAKTMEDTVTQVIEQRMTGIDNLRYLSSTSDSFGNTQITLTFNAEADPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S I D + Sbjct: 110 KLQSALPLLPSEVQQQGVKVNKSSSSFLMVVGFYSKDGSMDKNDISDYISSNVADPMSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L + T+ + N G Sbjct: 170 PGVGEIQTFGAQ-YAMRIWLDPLKLTKYNLTSIDVISAIKEQNAQISAGQLGAAPSLPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + I + + Sbjct: 229 ELNATVSAQSRL-------------KTPEEFKNIIVKSDSSGATVHLGDVARVELGAEDY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T E L+ + Sbjct: 276 SVQVFYNGKPASGLGIKLATGANALATAEAVKAKIDELKPFFPEGLETVYPYDTTPFVEK 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV I++++ + + L+ ++ + ++ T A+LS+ G ++ ++ Sbjct: 336 SIEGVVHTLFEAVALVFIIMYLFLQNFRATLIPTIAVPVVLLGTFAVLSMAGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + +T V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEEGLNAVEATRKSMDQITGALVGIAMTLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526 + F G R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFMSGSTGVIYRQFSITIVTAMALSVMVALILTPALCATMLKPIEHGEIKGFFGWFNRT 515 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + +A R+ L + +G + + Sbjct: 516 FDNLTKRYESSVAAMIKRSIRVMFIFLGLTVAVGWVFSKMPTSFLPDEDQGILFSQAILP 575 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++ + ++ + F V G +K + Sbjct: 576 VNSTQEQTQEVMDKVSNYYLNEEKDTVASVFSVSGFSFAGSGQNMGMAFIGLKDWSDRQL 635 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 P +++ ++ ++ S Sbjct: 636 PGMDVKSIVGRSMAYFHQIKN----ALVFSFA 663 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 32/269 (11%), Positives = 81/269 (30%), Gaps = 13/269 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + V S + + N N + Sbjct: 773 QYRMKPTDLDTWYVRNNKGEMVPFSAFATGEWKYASPRLERFNATPAVNIQGSVVAGYST 832 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + EMVK+ + E ++ +S + + + + Sbjct: 833 GQAMLDIEEMVKQLPPGFGIEWNGLSYEERLSGNQAPMLY------ALSILVVFLVLAAL 886 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W I + L I L G+ ++ +LT +G + + +++ + ++ Sbjct: 887 YESWSVPFAVILVVPLGIIGALLAMNARGMPNDVFFQVGLLTTVGLATKNAILIVEFAKE 946 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803 Y + ++ L + TS+A + V+P+A+ G + + Sbjct: 947 Y---YEKGAGLVEATLHAVRVRLRPIIMTSLAFGLGVVPLAISTGVGSGGKNAIGTAVLG 1003 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G++ + IF + + ++ + Sbjct: 1004 GMLSSTFLGIFFIPIFFVVVERIFSRRKK 1032 Score = 71.3 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 82/235 (34%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + + L +++A ++ ++ P Sbjct: 260 VHLGDVARVELGAEDYSVQVFYNGKPASGLGIKLATGANALATAEAVKAKIDELKPFFPE 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + I +++ + + L + + + T Sbjct: 320 GLETVYPYDTTPFVEKSIEGVVHTLFEAVALVFIIMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 ++ G N + A++ IG V+D +VV + + ++ ++ + KS+++ Sbjct: 380 FAVLSMAGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEEGLNAVEATRKSMDQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V +M +PMA GS F+I + + ++ ++ + + Sbjct: 438 ITGALVGIAMTLSAVFVPMAFMSGSTGVIYRQFSITIVTAMALSVMVALILTPAL 492 >gi|327481770|gb|AEA85080.1| preprotein translocase subunit SecF [Pseudomonas stutzeri DSM 4166] Length = 303 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 89/292 (30%), Positives = 157/292 (53%), Gaps = 5/292 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM R +++L ++ S+ L GLN+G+DF GG + + RPV+L VR Sbjct: 1 MKRVINFMGVRHVAFALTVLLTVASLGSLVVKGLNFGLDFTGGTLIELGYERPVELEQVR 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 L D Q+F + LVR+ Q + + +++ E Sbjct: 61 GQLVQAGFTDAVVQSFGATTDVLVRMP----GDDPQLGERIASALRNADGGNAVSVKRVE 116 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL +G +G++++ +L+Y+ RF+W F GA+ +L D+ LG F+ F Sbjct: 117 FVGPAVGEELRDQGGLGMLLALGGILVYVAFRFQWKFGFGAVLSLFHDVIVVLGVFSFFQ 176 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 I F+LT +AAVL +IGYS+ND +V++DR+R+N + + I+ S ++TL R++ T Sbjct: 177 ISFDLTVLAAVLAVIGYSLNDTIVIFDRIRENFR-MLRKAELLENINISTSQTLLRTMAT 235 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 S++ ++V + V+GG + F++ + G+ V SS+++A +L+++ R Sbjct: 236 SVSTLLAVGALMVFGGENLWGFSLALLIGVGVGTYSSVYVAGTLLVWLKLTR 287 >gi|152972186|ref|YP_001337332.1| integral transmembrane protein; acridine resistance [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957035|gb|ABR79065.1| integral transmembrane protein; acridine resistance [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 1036 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 73/682 (10%), Positives = 186/682 (27%), Gaps = 42/682 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L L Q + ++P+ P + Sbjct: 8 RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + + ITL+F + +V LQ Sbjct: 54 AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ D + + S + D I Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPTTTQDDISDYVASNVKDPISRLNGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + D + L + T + + N+ G Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALQVQNDQIAAGQLGGTPALKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T A L+ + S Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ G+V Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + S+ + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + ++ + V ++ ++ + + +G + Sbjct: 520 RSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L+++ + + + E F V G +K Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDK 639 Query: 649 STIQNTEIVGPKISRELIRKGI 670 +++++ ++ + Sbjct: 640 NSVESIIKRATVAFSQIKDAMV 661 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + G + L V A+ V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680 + G + T K + ++ ++ I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T ++FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + +S ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 854 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLA 913 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+ ++ +LT IG S + +++ + + M+ + ++ L Sbjct: 914 ATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--IIEATLEASRMRLR 971 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G++ A +I Sbjct: 972 PILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATLLAI 1017 >gi|329997537|ref|ZP_08302815.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3] gi|328539020|gb|EGF65064.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3] Length = 1036 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 73/682 (10%), Positives = 186/682 (27%), Gaps = 42/682 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L L Q + ++P+ P + Sbjct: 8 RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + + ITL+F + +V LQ Sbjct: 54 AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ D + + S + D I Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPTTTQDDISDYVASNVKDPISRLNGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + D + L + T + + N+ G Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALQVQNDQIAAGQLGGTPALKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T A L+ + S Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ G+V Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + S+ + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + ++ + V ++ ++ + + +G + Sbjct: 520 QSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L+++ + + + E F V G +K Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDK 639 Query: 649 STIQNTEIVGPKISRELIRKGI 670 +++++ ++ + Sbjct: 640 NSVESIIKRATVAFSQIKDAMV 661 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + G + L V A+ V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680 + G + T K + ++ ++ I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T ++FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + +S ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 854 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLA 913 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+ ++ +LT IG S + +++ + + M+ + ++ L Sbjct: 914 ATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--IIEATLEASRMRLR 971 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G++ A +I Sbjct: 972 PILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATLLAI 1017 >gi|90581492|ref|ZP_01237286.1| AcrB/AcrD/AcrF family protein [Vibrio angustum S14] gi|90437353|gb|EAS62550.1| AcrB/AcrD/AcrF family protein [Vibrio angustum S14] Length = 1043 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 69/692 (9%), Positives = 179/692 (25%), Gaps = 52/692 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + + ++PS P +V+ Sbjct: 8 RPIFAWVIAIIVMLAGVLSII-----KLPVAQYPSIAPPT-------------VVISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S +ITL+F + +V Sbjct: 50 PGANAKTMEDTVTQVIEQRMTGIDNLRYLSSTSDSFGNTQITLTFNAEADPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S I D + Sbjct: 110 KLQSALPLLPSEVQQQGVKVNKSSSSFLMVVGFYSKDGSMDKNDISDYISSNVADPMSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L + T+ + N G Sbjct: 170 PGVGEIQTFGAQ-YAMRIWLDPLKLTKYNLTSLDVISAIKEQNAQISAGQLGAAPSLPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + I + + Sbjct: 229 ELNATVSAQSRL-------------KTPEEFKNIIVKSDSAGATVRLGDVARVELGAEDY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T E L+ + Sbjct: 276 SVQVFYNGKPASGLGIKLATGANALATAEAVKAKIDELKPFFPEGLETVYPYDTTPFVEK 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV I++++ + + L+ ++ + ++ T A+LS+ G ++ ++ Sbjct: 336 SIEGVVHTLFEAVVLVFIIMYLFLQNFRATLIPTIAVPVVLLGTFAVLSMAGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIA 473 +VL IGL VD I+V E + + + + + + I + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEEGLNAVEATRKSMDQITGALVGIAMTLSAVFVP 455 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526 + G R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 456 MAFMSGSTGVIYRQFSITIVTAMALSVMVALILTPALCATMLKPIEHGEKKGFFGWFNRT 515 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + +A R+ L + +G + + Sbjct: 516 FDNLTKRYESSVAAMIKRSIRVMFIFLGLTVAVGWVFSKMPTSFLPDEDQGILFSQAILP 575 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++ + ++ + F V G +K + Sbjct: 576 VNSTQEQTQEVMDKVSNYYLNEEKDTVASVFSVSGFSFAGSGQNMGMAFIGLKDWSDRQL 635 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 P +++ ++ ++ S Sbjct: 636 PGMDVKSIVGRSMAYFHQIKN----ALVFSFA 663 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 32/269 (11%), Positives = 81/269 (30%), Gaps = 13/269 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + V S + + N N + Sbjct: 773 QYRMKPTDLDTWYVRNNKGEMVPFSAFATGEWKYASPRLERFNATPAVNIQGSVVAGYST 832 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + EMVK+ + E ++ +S + + + + Sbjct: 833 GQAMLDIEEMVKQLPPGFGIEWNGLSYEERLSGNQAPMLY------ALSILVVFLVLAAL 886 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W I + L I L G+ ++ +LT +G + + +++ + ++ Sbjct: 887 YESWSVPFAVILVVPLGIIGALLAMNARGMPNDVFFQVGLLTTVGLATKNAILIVEFAKE 946 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803 Y + ++ L + TS+A + V+P+A+ G + + Sbjct: 947 Y---YEKGAGLVEATLHAVRVRLRPIIMTSLAFGLGVVPLAISTGVGSGGKNAIGTAVLG 1003 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G++ + IF + + ++ + Sbjct: 1004 GMLSSTFLGIFFIPIFFVVVERIFSRGKK 1032 Score = 71.6 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 84/240 (35%), Gaps = 6/240 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A V L V + + + L +++A ++ ++ Sbjct: 255 SAGATVRLGDVARVELGAEDYSVQVFYNGKPASGLGIKLATGANALATAEAVKAKIDELK 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + + + + + I +++ + + L + + Sbjct: 315 PFFPEGLETVYPYDTTPFVEKSIEGVVHTLFEAVVLVFIIMYLFLQNFRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T ++ G N + A++ IG V+D +VV + + ++ ++ + Sbjct: 375 VLLGTFAVLSMAGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEEGLNAVEATR 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+++ G V +M +PMA GS F+I + + ++ ++ + + Sbjct: 433 KSMDQITGALVGIAMTLSAVFVPMAFMSGSTGVIYRQFSITIVTAMALSVMVALILTPAL 492 >gi|39935897|ref|NP_948173.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris CGA009] gi|39649751|emb|CAE28272.1| putative protein-export membrane protein secF [Rhodopseudomonas palustris CGA009] Length = 372 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 116/302 (38%), Positives = 187/302 (61%), Gaps = 6/302 (1%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 L ++PD F R R IS + SI +I L FTHGLN+GIDF+GG L V Sbjct: 22 FGWLPSLRIVPDNTHFDFTRFRRISFPISAVLSIAAITLFFTHGLNFGIDFRGGTLLEVR 81 Query: 585 ANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A+ D++ +R L L +GD+ Q F G L+R+ QPG AQ ++ V+ + Sbjct: 82 AHSGAADIAGMRDTLSKLSLGDVQLQQFGGPAEVLIRIAEQPGGDQAQQVAVQKVRAAL- 140 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + E+VGP++S EL+ G++G++++ + +L+Y+W RF+W FALGA+ + D Sbjct: 141 --GDSVDYRRVEVVGPRVSSELLAFGMLGLMVAILGILVYLWFRFEWQFALGAMIANVHD 198 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I T+GF ++ ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y + L+++ Sbjct: 199 IVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNE 257 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822 SIN TL RS+ T + +++L + ++GG I SF M FG ++V +SIFIAAPIL++ Sbjct: 258 SINSTLSRSIITHVTVTLALLALLLFGGHAIHSFTAVMMFGVVLVGTYTSIFIAAPILIY 317 Query: 823 IY 824 + Sbjct: 318 LG 319 >gi|311277772|ref|YP_003940003.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Enterobacter cloacae SCF1] gi|308746967|gb|ADO46719.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Enterobacter cloacae SCF1] Length = 1036 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 71/682 (10%), Positives = 186/682 (27%), Gaps = 42/682 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L L Q + ++P+ P + Sbjct: 8 RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + ITL+F + +V LQ Sbjct: 54 AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGGVTITLTFKSGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ D + + S + D I Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPTTSQDDISDYVASNVKDAISRLNGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + D + L + T + + N+ G Sbjct: 174 DVQLFGAQ-YAMRIWLDGNLLNKYNLTPVDVINQLKIQNDQIAAGQLGGTPAVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I Sbjct: 233 SIIAQTRL-------------KDPVEFGNVTLRVNADGSVVHLKDVARIELGGENYNVVA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T A L+ + S Sbjct: 280 RINDKPASGLGIKLATGANALDTAAAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ G+V Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + +++ + + S+ + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPAAADHHEKKGFFGWFNAKFD 519 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + + ++ + + ++ + ++ + + +G + Sbjct: 520 NSVNHYTNSVSRILHGTGRYLLIYVLIVAGMAVLFMRLPTSFLPEEDQGVFMTMIQLPSG 579 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L+ + ++ + + E F V G +K Sbjct: 580 ATQERTQKVLDEVSHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERSGTA 639 Query: 649 STIQNTEIVGPKISRELIRKGI 670 + +++ ++ + Sbjct: 640 NNVESIIKRATMAFSQIKDAMV 661 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 93/269 (34%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + G + L V A+ V + +E + + + + Sbjct: 232 ASIIAQTRLKDPVEFGNVTLRVNADGSVVHLKDVARIELGGENYNVVARINDKPASGLGI 291 Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T ++ ++ P + I + + + + I + Sbjct: 292 KLATGANALDTAAAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T + FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + + ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMVEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 61.2 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 + + L T + G L + IS I + + + ++ W Sbjct: 837 DAMLLMEQLAGQLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 896 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M+ Sbjct: 897 FSVMLVVPLGVIGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 956 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 957 G--IIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1014 Query: 811 SSI 813 +I Sbjct: 1015 LAI 1017 >gi|62181046|ref|YP_217463.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128679|gb|AAX66382.1| RND family, aminoglycoside/multidrug efflux pump [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715529|gb|EFZ07100.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 1037 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTAPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLCVNQDGSEVKLGDVATVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W + +L L + +G + Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKNNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664 Score = 77.4 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A +++ ++ + P Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 65.5 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 IS + + + + ++ W + + L + L + G+E ++ +LT+IG Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + + + D + + + TS+A VLPMA Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRPRPILMTSLAFIFGVLPMATSTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + + G++ A +IF + I R Sbjct: 993 GSGSQHAVGTGVTGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035 >gi|51832760|gb|AAN38824.2| AdeE [Acinetobacter sp. 4365] Length = 1036 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 82/693 (11%), Positives = 205/693 (29%), Gaps = 49/693 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I +G + L ++++P P G ++ + Sbjct: 9 RPIFAWVLSICIMALGTISIL-----TLPIEQYPDIAPP-----------GVNVT--ANY 50 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ L +K S Q +I+LSF + + +V Sbjct: 51 PGASAKTVEDSVTQILEQQIKGIDGLLYFSSSSSSAGQARISLSFDQNTNPDTAQVQVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + S+L + ++ + T + S+++ + +++ S ++ D + Sbjct: 111 AVNQALSRLPQEVQQQGITVTKSQGDSLLVFALYDESGTRSSVDISDYMVSTLQDPLSRV 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L + + N G RD Sbjct: 171 DGVGEITAFGAQ-YAMRIWLDPHKLNSYGLMPSDVRTAIEAQNTQITAGELGALPTRDGQ 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + I E + + Sbjct: 230 ALNATVTALSRL-------------QTVSQFENIILRTETNGAVVLLKDVARVERGAESY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + + + T E L A + Sbjct: 277 QTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEA 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T A LV+IV+F+ + + L+ ++ + ++ T +LS+LG ++ ++ Sbjct: 337 SVNGVIKTLAEAIVLVIIVMFLFLQSWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTL 396 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMHEQNLDARQATLISMQEISGALVGIAMVLAAVFLP 456 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F++T+ ++++S A+++ A+ +++ K + F Sbjct: 457 MAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLLKPANEKHKQRKFFTWFNR 516 Query: 534 IPDCIAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + + + + + + + ++ + + +G + + Sbjct: 517 KVEQGQSGYRTKLVAVLGKPKVFMIIFVGITALLGWQYTRMNTGFLPQEDQGSVMVQFST 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 L+ + ++ + + F+V + G +K Sbjct: 577 PVGTTLAETERVGNQIADYFLTKEKNNLNVIFMVMGRNNAGSGQNVGMAFAGLKHWDDRE 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 +T + + L + + +A+ Sbjct: 637 GSENTAEAVIARANAHFKSLRNARVQVLSPAAV 669 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 84/210 (40%), Gaps = 8/210 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + + + + + ++ +++ +I+ +++ I M +++ Sbjct: 302 ETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEASVNGVIKTLAEAIVLVIIVMFLFLQ 361 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + T G ++ G N + A++ IG V+D +VV + + Sbjct: 362 ---SWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTLFAMVLAIGLLVDDAIVVVENV- 417 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 ++ ++ R S+ E G V +M LPMA +GGSV F++ + Sbjct: 418 -ERVMHEQNLDARQATLISMQEISGALVGIAMVLAAVFLPMAFFGGSVGIIYRQFSVTLV 476 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +V++A ++ ++ + + + + Sbjct: 477 SAMVLSAIVALTLSPALCATLLKPANEKHK 506 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 8/212 (3%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIISAIAML 681 Q S A K+ ++V N + G +L + I + S I + Sbjct: 821 VQIQGSAAAGESSGGAMDKMQQLVDQQQGFNLQWSGLSYQEKLAGGQTIWLYLASIIFIF 880 Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 + + ++ W + + + L + + +L G ++ A+LT IG S + +++ Sbjct: 881 LCLAALYESWSIPVSVMLVIPLGLIGAVVAASLAGFVNDIYFQVAMLTTIGLSAKNAILI 940 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797 + + D I + + L + TS+A VLP+AV G Sbjct: 941 VEFA---AAKLEAGQALMDAIIEGAGQRLRPIIMTSLAFVAGVLPLAVSTGAGAVSRKEI 997 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 I + G++ SIF L + K Sbjct: 998 GIAVTGGMISGTLLSIFFVPLFFLLVRRLTNK 1029 >gi|113969359|ref|YP_733152.1| preprotein translocase subunit SecD [Shewanella sp. MR-4] gi|113884043|gb|ABI38095.1| protein-export membrane protein SecD [Shewanella sp. MR-4] Length = 624 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 163/532 (30%), Positives = 276/532 (51%), Gaps = 35/532 (6%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 + +++ P L +++ PS + I LGLDLRGG +L+VD Sbjct: 105 TLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQAD 164 Query: 72 MYSDELRSFLKKEGIGVFSMRQIQNK------ITLSFADSRFKENIADKVTLFLQGVNSK 125 + LR FL+++ I S+R + I ++F D+ T + + Sbjct: 165 ALVESLRQFLREQQIRGASVRIDSTRDDAGLQIAIAFNDAAES-------TNNARSAIRQ 217 Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185 +T + + + L+Q ++ + ++Q+++I+R RI+++GI+E+ +QR G Sbjct: 218 FMQQSYPTWQLTNADNGLVVQLAQEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQG 277 Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245 HRI I+LPG QDP+ + ++G TA ++F +V + L+D GN V Sbjct: 278 EHRIRIELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAQVLKDKSGNPVYVAR 332 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305 + G H+ A AN V+I D +G ++ E +R NI KP+A Sbjct: 333 TPILGGDHIVDARANIGEMGM-AEVNIHLDRIGGQKMSEFSRANIDKPMATSYSEYSRDE 391 Query: 306 P------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 Q+ + +I+G T + A LA +LRAGS+ + IVEER +G Sbjct: 392 QGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIG 451 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATL 412 LG+++I G A+ G+ + +LFM + Y + G VA+ ++ N+++ LL+L+ A L Sbjct: 452 PTLGAENIQNGFAALGLGMGITLLFMALWYRRLGWVANVALIANMVILFGLLALIPGAVL 511 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAG+VL +G+AVD+N+L+ ERI+++ ++ +S ++D GF A+STIFD+N T +I Sbjct: 512 TLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMI 571 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 VVL+ G G ++GFA+T+GL +L SMFT I RA++ + + + Sbjct: 572 TAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVR 623 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 93/260 (35%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G + + S + + + ++ L G Q Sbjct: 365 GQKMSEFSRANIDKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 424 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I+ G + + L+++ + ++ Sbjct: 425 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALWYR-R 483 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R++ +K Sbjct: 484 LGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 543 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID + + I+ + + G I FA+ + G++ + Sbjct: 544 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 600 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + ++ +Y A+ Sbjct: 601 TGIFASRALINLVYGRDARR 620 >gi|310815839|ref|YP_003963803.1| protein-export membrane protein SecD [Ketogulonicigenium vulgare Y25] gi|308754574|gb|ADO42503.1| protein-export membrane protein SecD [Ketogulonicigenium vulgare Y25] Length = 554 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 187/554 (33%), Positives = 298/554 (53%), Gaps = 33/554 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSA 38 M W IL ++ G+L A+PN ++ +P+ Sbjct: 1 MHIPLWRRILTWVVVAAGVLAAVPNAFYATVEQSNDAKSQIESGVSDDALRAQAAGWPAW 60 Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ----I 94 +P + +SLGLDLRGG+HL+ EV + ++R L + + +++ Sbjct: 61 LPSSIVSLGLDLRGGAHLLAEVQLSQVYAERVDAMWPQVRDLLAAQRDTLGFVQRIEGGD 120 Query: 95 QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154 + + + +++ D + Q V + + + ISI LS+ Sbjct: 121 PSALRVRISNADQAGRAVDLIRTLAQPVQTLTGIGATDLDV-RADNGVISITLSEAERAA 179 Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214 A+ QS+EIIR+RID++G E TI R G RIL+Q+PG ++ L+G TA+++F Sbjct: 180 TDERAMRQSLEIIRRRIDEVGTREPTIIRQGEDRILVQVPGVGSAQEVKDLIGATARLTF 239 Query: 215 HKV----LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270 V N++ V D G Y+++ + +SG L + +FD +PVV Sbjct: 240 QHVVSSTNDPNAQVTPDQEVLPALDQPGVYYILDRQEIVSGEQLVDSQPSFDQTG-RPVV 298 Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 F+ GAR F E T G A+VLDG V++AP I + I G ISG F IE Sbjct: 299 TFRFNPTGARAFGEHTAQYTGSLFAIVLDGEVISAPQIREPILGGSGSISGTFNIEQTTN 358 Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLV 389 LA +LRAG+LP L +EER +G +LG DSI G A + +L++ +M++ YG +G++ Sbjct: 359 LAVLLRAGALPADLVFLEERTIGPELGQDSIDAGVRASIIAGLLVMGYMVLSYGLFFGMI 418 Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449 A+ ++ LNV + L LLS++GATLTLP IAGIVL +G+AVD+N+L+ ER+REE R+ ++ + Sbjct: 419 ANIALILNVTMMLGLLSIIGATLTLPGIAGIVLTMGVAVDANVLIFERMREEIRRGKAPW 478 Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509 ++G+ +A S I DSNIT+++ ++L+ G GAVRGFA+T+GL + SMFTA+ + R Sbjct: 479 RCFELGYDKAMSAIIDSNITSIMIAIILYVIGSGAVRGFAVTLGLGVATSMFTAVFVTRL 538 Query: 510 MMIFIIRYKKMKSI 523 +++ +K K + Sbjct: 539 ILLHWFEMRKPKKL 552 Score = 144 bits (361), Expect = 9e-32, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 90/176 (51%), Gaps = 3/176 (1%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +GP++ ++ I G+ II+ + ++ Y+ + + +F + A LIL++T LG ++ G Sbjct: 379 TIGPELGQDSIDAGVRASIIAGLLVMGYMVLSYGLFFGMIANIALILNVTMMLGLLSIIG 438 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++++RMR+ ++ + + ++ + + + Sbjct: 439 ATLTLPGIAGIVLTMGVAVDANVLIFERMREEIR---RGKAPWRCFELGYDKAMSAIIDS 495 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ + + + + V G + FA+ + G+ + +++F+ ILL ++ R Sbjct: 496 NITSIMIAIILYVIGSGAVRGFAVTLGLGVATSMFTAVFVTRLILLHWFEMRKPKK 551 >gi|158534611|gb|ABW72062.1| acriflavin resistance protein B [Edwardsiella tarda] Length = 1050 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 71/688 (10%), Positives = 184/688 (26%), Gaps = 51/688 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L + + ++P+ P + + Sbjct: 8 RPIFAWVLAIIMMLAGALAIM-----SLPVAQYPTVAPPA-------------VTISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ITL+F + +V Sbjct: 50 PGADAATVQNSVTQVIEQNMNGIDNLMYMSSTSDSAGNASITLTFEAGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D + + Sbjct: 110 KLQLAMPSLPQEVQQQGVSVDKASSSILLVAGFISEDGSLSQDDIADYVASNIKDPLSRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L + T + + NN G G Sbjct: 170 QGVGSVQLFGSQ-YAMRIWLDPNKLNKYNLTPVDVVSQIKVQNNQIAGGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + R + Sbjct: 229 QLNASIIVQTRL-------------KDPTEFGKILLKVQQDGSRVLLRDVARVELGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A L + Sbjct: 276 GTIARYNGKPAAGIAVKLATGANALDTAKAVKTELAKLAPYFPASLKTVYPYDTTPFVQL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L ++G ++ ++ Sbjct: 336 SIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAILEIVGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ S+++S+ A+ + A+ + ++ Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPALCATMLKPIAKGDHGVQTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D + + V ++ + + + +G + Sbjct: 516 NRLFEKSTHHYTDSVGRILRGTGRYLVIYLLIVVGMGLLFIRLPTSFLPEEDQGVLLTMA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + ++ + + E F V G +K Sbjct: 576 QLPPGATQERTNNVLKQVSQYYLTKEKDNVESVFTVSGFGFSGQGQNNGLAFVSLKPWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIV 671 + + ++ + Sbjct: 636 RKGDQNKVTAIIQRAAGAFSKINDAMVY 663 Score = 74.3 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 81/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + + + +++ + ++ K+ P S Sbjct: 264 DVARVELGAENYGTIARYNGKPAAGIAVKLATGANALDTAKAVKTELAKLAPYFPASLKT 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + + + + +++ + L + + + T Sbjct: 324 VYPYDTTPFVQLSIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAIL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 + G N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 EIVGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKKSMEQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + +V++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPAL 492 Score = 58.9 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 +L G+ ++ +LT IG S + +++ + M + +++ L Sbjct: 915 TSLRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAVDLMHKEGKG--LVEATLEAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A V+P+ + G + + G+V A +I Sbjct: 973 PILMTSLAFIHGVMPLVISNGAGSGAQNAVGTGVMGGMVSATILAI 1018 >gi|152991990|ref|YP_001357711.1| preprotein translocase subunit D [Sulfurovum sp. NBC37-1] gi|151423851|dbj|BAF71354.1| preprotein translocase subunit D [Sulfurovum sp. NBC37-1] Length = 526 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 157/539 (29%), Positives = 293/539 (54%), Gaps = 33/539 (6%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + VIL+ G++ ++P+ +I+LGLDL+GG H++L + Sbjct: 1 MKTLNFRVILFIFALIFGVVFSIPSLTQSE---------SGKKITLGLDLQGGLHMLLGI 51 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119 D + + + ++ E I +R +K+T DS + + Sbjct: 52 KSDVAIASRTKSIAGTVKYIFDDEEIIFDDLRMVDGDKVTFELLDSDDVAKATALLKKEI 111 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 +++ + ++ ++ + + +AI+Q+++ IR R+++ G++E Sbjct: 112 ------------PGIVINQNGMKFTVQMTPEEMARTKQNAIKQAVDTIRNRLNEFGLAEP 159 Query: 180 TIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLP--------NNSKKGFMF 228 T+ + G +IL+++PG + D R+R+L+ A + V ++ + + Sbjct: 160 TVAKQGEDKILVEVPGIKTQADEQRIRELIARAAHLQLMAVDEDRAARVSTMSAAEAKSY 219 Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288 G L+D + N+ + ++ + + K++ PV++ S + GA+ F + T Sbjct: 220 GDVILKDVNTNEKYLLRQIPVLDGSMLTDAKVGFDKSNMPVINFSLNGQGAKIFGDFTAK 279 Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348 +GK +AVVLD +V +APVI + I G QISGNF +E A +A LR+G+L + ++E Sbjct: 280 AVGKRMAVVLDNKVYSAPVIRERIGGGHVQISGNFKLEEAHDIAIALRSGALLAPVFVME 339 Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408 +R+VG LG+DSI + A+ G +L++ FM++ Y G++A+ ++ N+ L LA++SL Sbjct: 340 KRSVGPSLGADSIKASSIALALGFILVIAFMVIYYSMAGVIANVALVGNLFLILAIMSLF 399 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 GATLTLP +AGIVL +G+AVD+N+++NERIRE + +S+ +++ G+ A++ I D+N+ Sbjct: 400 GATLTLPGMAGIVLTVGMAVDANVIINERIRELLHEGKSIAKAIEDGYDNAFTAILDANV 459 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 T LIA VVL+ +G GA++GFA+TM + IL SM TAI + +++ + + ++ Sbjct: 460 TTLIAAVVLYAYGTGAIKGFALTMSIGILASMLTAIVGTHGIYQWLLPKMRKERLNFWF 518 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 77/180 (42%), Gaps = 4/180 (2%) Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 VGP + + I+ + + + I ++ ++ I + + A L+ ++ L Sbjct: 338 MEKRSVGPSLGADSIKASSIALALGFILVIAFMVIYYSM-AGVIANVALVGNLFLILAIM 396 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +LFG L +A ++ +G +V+ V++ +R+R+ + S I+ + Sbjct: 397 SLFGATLTLPGMAGIVLTVGMAVDANVIINERIRELLHE---GKSIAKAIEDGYDNAFTA 453 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++ I+ + + +G I FA+ M+ GI+ + ++I I ++ K Sbjct: 454 ILDANVTTLIAAVVLYAYGTGAIKGFALTMSIGILASMLTAIVGTHGIYQWLLPKMRKER 513 >gi|31376270|dbj|BAC77251.1| multidrug efflux pump SdeY [Serratia marcescens] Length = 1051 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 66/574 (11%), Positives = 160/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIVMLAGVLAIM-----KLPIAQYPTIAPPA-------------VSISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQIIEQNMNGIDNLMYMSSTSDSSGSVTITLTFESGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ L ++++ D + + + D I S Sbjct: 110 KLSLATPLLPQEVQQQGLKVEKSSSSFLMVAGFVSDDPNMTQDDIADYVASNIKDPISRS 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L TT ++ NN G Sbjct: 170 SGVGEVQLFGAQ-YAMRIWLDPNKLNNYQLTTTDVTSAITEQNNQIAAGKLGGLPGGRGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + +I + + Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGKILLKVNTDRFQVRLRDVAHIERGRKAM 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A + + Sbjct: 276 PFTARYNGKPAAGLGIKLATGANALNTAKGVKDELAKMTPFFPQGMKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +K I Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPIPKGDHGVKTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F ++ + L + Sbjct: 511 FFGWFNRMFEKSTHHYTDSVGNILRSTGRYLIIY 544 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 84/246 (34%), Gaps = 10/246 (4%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 + V + R + + + G L + L Sbjct: 254 NTDRFQVRLRDVAHIERGRKAMP--FTARYNGKPAAGLGIKLATGANALNTAKGVKDELA 311 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + + +T E+++ I +I+ + M +++ + L Sbjct: 312 KMTPFFPQGMKVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQ---NFRATLIP 368 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 + + + T A FG N + ++ IG V+D +VV + + + + Sbjct: 369 TIAVPVVLLGTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLP 426 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813 ++ KS+ + G V +M +PMA +GGS F+I + + ++ ++ Sbjct: 427 PKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVAL 486 Query: 814 FIAAPI 819 + + Sbjct: 487 ILTPAL 492 Score = 50.5 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 31/249 (12%), Positives = 78/249 (31%), Gaps = 11/249 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + + + V S S + N L + Sbjct: 777 PFRMLPEDINKWYVRGTSGQMVPFSAFSSAKWEYGSPRLERYNGLPSMEILGQAAPGKST 836 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + ++ K + I T + + + + I + L + Sbjct: 837 GEAMNLMEQLASKLPSGIGYDWTGMSYQERLSGNQAP----ALYAISI-LVVSLCLAALY 891 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W + L L + L + G+ ++ + +LT IG + +++ + + Sbjct: 892 ESWVVPFSVMLVLPLGVIGALA-STMRGMNNDVYSQVGLLTTIGLFAKNAILIVEFAKDL 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 M+ ++ + +++ L + TS+A + +LP+ + G + + G Sbjct: 951 MEKEGKGLT--EATLEAVRMRLRPILMTSLAFILGILPLVISSGAGSGAQNAVGTGVMGG 1008 Query: 805 IVVAASSSI 813 + A +I Sbjct: 1009 MTTATVLAI 1017 >gi|298530969|ref|ZP_07018370.1| protein-export membrane protein SecF [Desulfonatronospira thiodismutans ASO3-1] gi|298508992|gb|EFI32897.1| protein-export membrane protein SecF [Desulfonatronospira thiodismutans ASO3-1] Length = 371 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 97/344 (28%), Positives = 156/344 (45%), Gaps = 49/344 (14%) Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANR 587 F +I + FM R + IS++ + L G YGIDF GG+ L + Sbjct: 1 MGFQIIRPDTSFDFMGKRKIALTISLVLLFLGLASLLVKGGPRYGIDFAGGVILQIQFES 60 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDG-EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V++ + S L+ Q+ +S Q F N + G + + R + Sbjct: 61 EVEMGKLESLLQEAQLPGMSLQTFGDRGDNEYLVRSSAEGLTTSDVREQTRQALQAEFQE 120 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----------------- 689 T Q E+VGP++ EL + + + + + IYI RF+ Sbjct: 121 DEFTFQRLEMVGPRVGEELRENALQALFFAVLLISIYISGRFEHKWFIAGFMAAGLGLGV 180 Query: 690 -----------------------------WYFALGAITTLILDITKTLGFFALFGIEFNL 720 FALGA+ LI D+ T+G F+L EF+L Sbjct: 181 YLLKILGAPLVFLILAALLISIMFTWYLKLSFALGAVLALIHDVLITVGIFSLLNKEFDL 240 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 + VAA+LT+IGYS+ND +V+YDR+R+NM+ + S I+ S+N+TL R++ TS Sbjct: 241 SIVAALLTIIGYSLNDTIVIYDRIRENMRKKIS-ESLTQTINTSLNQTLSRTIVTSGTTL 299 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + +L + + GG +I FA + G++V SS+F+A+ ILL + Sbjct: 300 MVILSLLILGGGIIHDFAFALLVGVLVGTFSSVFVASSILLKLR 343 >gi|149926052|ref|ZP_01914315.1| hydrophobe/amphiphile efflux-1 family protein [Limnobacter sp. MED105] gi|149825340|gb|EDM84551.1| hydrophobe/amphiphile efflux-1 family protein [Limnobacter sp. MED105] Length = 1054 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 65/543 (11%), Positives = 156/543 (28%), Gaps = 32/543 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I GL + + ++P P V Sbjct: 9 RPVFAAVLSIFIMLAGLAA-----MRGLPIAQYPEIAPPVVQ---------VRAVYPGAS 54 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + + + + ++ + +I ++F + A V ++ Sbjct: 55 AEVIASTVAAPIENAINGVEDMMYMSSTSASSGVVEIMVTFEIGTDPDQAALNVNNRVKQ 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 V + L + ++ + + + + S + +D+I T Sbjct: 115 VENILPQEVRRQGVTVNKGSSSFLQVLAFYSEDGRFDDFYTSNYVTLNVLDRIKRIPGTT 174 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + P R+ QL T ++ N G + Y Sbjct: 175 NVQIFGAKDYAMRIWIKPDRMAQLKLTAGDIAAALNEQNAQFAAGKVGQAPNNNGQELVY 234 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + +S + + + + Sbjct: 235 TVTAQGRLS-------------EPEEFENILIRVNPDGSSLRLKDVARVELGSKDYDFTG 281 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + +T + A V S Sbjct: 282 RINGKPATLVGVFLQPGANALDVAQTVKNTVDEIAADFPEGLDYAVPYDTTRFVEVSIRE 341 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV IV+++ + + L+ ++ ++++ A L LLG ++ ++ G+V Sbjct: 342 VVKTLIEAMILVFIVVYVFLQNWRATLIPIVAVPVSLLGAFAGLYLLGYSINTLTLFGMV 401 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IG+ VD I+V E + + + S + + + + + F Sbjct: 402 LAIGIVVDDAIVVLENVERIMHEEGLSARKAAIKAMQEVTGPVIAIVLVLSAVFIPIGFL 461 Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G G R FAIT+ +++++S A+++ A+ + +++++ K + Sbjct: 462 GGLTGELYRQFAITIAIAVIVSGIVALTLTPALCVLLLKHEHKKPGKFFTAFNNWFARVT 521 Query: 538 IAI 540 Sbjct: 522 SKY 524 Score = 85.5 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 55/493 (11%), Positives = 143/493 (29%), Gaps = 26/493 (5%) Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 ++AGL + I Y + + + +++ A +I G+ Sbjct: 15 VLSIFIMLAGLAAMRGLPIAQYPEIAPPVVQVRAVYPGASAEVIASTVAAPIENAINGVE 74 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 + ++ S I + +R V + Sbjct: 75 DMMYMSSTSASSGVVEIMVTFEIGTDPDQAALNVNNRVKQVENILPQEVRRQGVTVNKGS 134 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541 ++ A +T+ + ++ I R ++ I + + + Sbjct: 135 SSFLQVLAFYSEDGRFDDFYTSNYVTLNVLDRIKRIPGTTNVQIFGAKDYAMRIWIKPDR 194 Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV-------- 593 + + I+ + + + + V A + Sbjct: 195 MAQLKLTAGDIAAALNEQNAQFAAGKVGQAPNNNGQELVYTVTAQGRLSEPEEFENILIR 254 Query: 594 ------------VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 V + D + + + +++ + ++ + Sbjct: 255 VNPDGSSLRLKDVARVELGSKDYDFTGRINGKPATLVGVFLQPGANALDVAQTVKNTVDE 314 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700 I P + IR+ + +I + I + I +++ + W L I + Sbjct: 315 IAADFPEGLDYAVPYDTTRFVEVSIREVVKTLIEAMILVFIVVYVFLQNWRATLIPIVAV 374 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + + L G N + ++ IG V+D +VV + + ++ +S R Sbjct: 375 PVSLLGAFAGLYLLGYSINTLTLFGMVLAIGIVVDDAIVVLENV--ERIMHEEGLSARKA 432 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817 K++ E G + + +P+ G G + FAI +A ++V+ ++ + Sbjct: 433 AIKAMQEVTGPVIAIVLVLSAVFIPIGFLGGLTGELYRQFAITIAIAVIVSGIVALTLTP 492 Query: 818 PILLFIYDWRAKN 830 + + + K Sbjct: 493 ALCVLLLKHEHKK 505 Score = 58.2 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 27/269 (10%), Positives = 80/269 (29%), Gaps = 13/269 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 G + + + +S S + N L Sbjct: 771 QYRKSPTDIGNMYVRSNKGEMIPISAFAKVEFSQGPETLERFNNLPAVKLLGSGAPGISS 830 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + ++ + + + + +++ A+ + + + + Sbjct: 831 GEAIQAIEDIAAEVLPDDFSYDFSGASFQEKRSEGSSSF-----ALVLGALMVFLILAAQ 885 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W + + + L + + ++ ++TL+G + + +++ + Sbjct: 886 YEKWTLPFSVLLAMPFGLFGALLAVWMRDMTNDVYFQIGLVTLLGLAAKNAILIVEFA-- 943 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803 + +S + ++ + TS A + V+P+A + + Sbjct: 944 -VLKREEGMSALEASLEAARLRFRPILMTSFAFILGVVPLAFSSGAGAGARAAVGTGVMG 1002 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G+ A +IF P+ + D K R Sbjct: 1003 GMTAATLLAIFFV-PLFYRLIDRGEKGGR 1030 >gi|289578222|ref|YP_003476849.1| protein-export membrane protein SecF [Thermoanaerobacter italicus Ab9] gi|297544503|ref|YP_003676805.1| protein-export membrane protein SecF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527935|gb|ADD02287.1| protein-export membrane protein SecF [Thermoanaerobacter italicus Ab9] gi|296842278|gb|ADH60794.1| protein-export membrane protein SecF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 303 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 78/297 (26%), Positives = 148/297 (49%), Gaps = 4/297 (1%) Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 I + IS + + + +F +G N+GIDF GG + V +P D + + Sbjct: 3 QYRFNIDVISKTKIWFAISGIVILIGVIAMFINGFNWGIDFTGGTIMEVRIGKPFDPNDI 62 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 L ++ D Q + + + + + + + ++ + + + + Sbjct: 63 IKILNGYKVKDFQIQKIGTKGDEVSIKTSPIANEIRLSIIKDIY---KKYNLTENDLIMS 119 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 + VGP + E+ I ++++++AM IY+ RF++ + AI L+ D+ + + +F Sbjct: 120 QQVGPSLGEEIKFGMIGALLLASVAMFIYLGFRFEFEMSEAAIIGLLHDVFILISIYTIF 179 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 I N +AAVLT+ GYSVND VV++DR+R N+K+ S + + + S+N+T+ RS+ Sbjct: 180 NITINAPFIAAVLTVFGYSVNDTVVIFDRIRDNLKIMKKS-DYSQIANVSVNQTMTRSIN 238 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 T++ I ++ M G + FA+P+ GIV A SSIFI+ P+ + I + + Sbjct: 239 TTLTTLIMLVLMYFLGPKALKDFALPLLIGIVSGAYSSIFISTPLWVLIKNREKRRR 295 >gi|318606651|emb|CBY28149.1| putative aminoglycoside efflux pump [Yersinia enterocolitica subsp. palearctica Y11] Length = 1043 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 71/556 (12%), Positives = 154/556 (27%), Gaps = 46/556 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S ITL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + ++++ + + + D + Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT + N+ G D+ Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E A L + Sbjct: 276 DYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPHGLEAKIAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + S+ + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMSQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ +++ S+ A+ + A+ +K I Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVHSVLVALILTPALCAT-----MLKPIKPGHHHAKRG 510 Query: 534 IPDCIAIQFMRARFWG 549 F R Sbjct: 511 FFGWFNRMFDRNAHRY 526 Score = 85.1 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 87/235 (37%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + +++ ++T P Sbjct: 260 VTLGDVAKIEMGAEKYDYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + + R+ KS+++ Sbjct: 380 FAILSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ +PMA +GG+ F+I + +V + ++ + + Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVHSVLVALILTPAL 492 Score = 74.3 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRLRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTCVMGGMISATVLAIFFVPLFFVLVRRR 1029 >gi|78100762|pdb|1T9T|A Chain A, Structural Basis Of Multidrug Transport By The Acrb Multidrug Efflux Pump gi|78100763|pdb|1T9U|A Chain A, Structural Basis Of Multidrug Transport By The Acrb Multidrug Efflux Pump gi|78100764|pdb|1T9V|A Chain A, Structural Basis Of Multidrug Transport By The Acrb Multidrug Efflux Pump gi|78100765|pdb|1T9W|A Chain A, Structural Basis Of Multidrug Transport By The Acrb Multidrug Efflux Pump gi|78100766|pdb|1T9X|A Chain A, Structural Basis Of Multidrug Transport By The Acrb Multidrug Efflux Pump gi|78100767|pdb|1T9Y|A Chain A, Structural Basis Of Multidrug Transport By The Acrb Multidrug Efflux Pump Length = 1049 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQA 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|123441492|ref|YP_001005478.1| aminoglycoside/multidrug efflux system [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088453|emb|CAL11245.1| multidrug efflux protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1043 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 70/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S ITL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + ++++ + + + D + Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT + N+ G D+ Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E A L + Sbjct: 276 DYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPHGLEAKIAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + S+ + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMSQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F++T+ ++++S+ A+ + A+ +K I Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVALILTPALCAT-----MLKPIKPGHHHAKRG 510 Query: 534 IPDCIAIQFMRARFWG 549 F R Sbjct: 511 FFGWFNRMFDRNAHRY 526 Score = 86.7 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 88/235 (37%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + +++ ++T P Sbjct: 260 VTLGDVAKIEMGAEKYDYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + + R+ KS+++ Sbjct: 380 FAILSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ +PMA +GG+ F++ + +V++ ++ + + Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVALILTPAL 492 Score = 74.3 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRLRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029 >gi|238919030|ref|YP_002932544.1| RND transporter, AcrB protein, [Edwardsiella ictaluri 93-146] gi|238868598|gb|ACR68309.1| RND transporter, AcrB protein, putative [Edwardsiella ictaluri 93-146] Length = 1050 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 72/688 (10%), Positives = 184/688 (26%), Gaps = 51/688 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L + + ++P+ P + + Sbjct: 8 RPIFAWVLAIIMMLAGALAIM-----SLPVAQYPTVAPPA-------------VTISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ITL+F + +V Sbjct: 50 PGADAATVQNSVTQVIEQNMNGIDNLMYMSSTSDSAGNASITLTFEAGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D + + Sbjct: 110 KLQLAMPSLPQEVQQQGVSVDKASSSILLVAGFISEDGSLSQDDIADYVASNIKDPLSRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L + T + + NN G G Sbjct: 170 QGVGSVQLFGSQ-YAMRIWLDPNKLNKYNLTPVDVVSQIKVQNNQIAGGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + R + Sbjct: 229 QLNASIIVQTRL-------------KDPTEFGKILLKVQQDGSRVLLRDVARVELGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A L + Sbjct: 276 GTIARYNGKPAAGIAVKLATGANALDTAKAVKTELARLAPYFPASLKTVYPYDTTPFVQL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L ++G ++ ++ Sbjct: 336 SIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAVLEIVGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ S+++S+ A+ + A+ + ++ Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPALCATMLKPIAKGDHGVQTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D I + V ++ + + + +G + Sbjct: 516 NRLFEKSTHHYTDSIGRILRGTGRYLVIYLLIVVGMGLLFIRLPTSFLPEEDQGVLLTMA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + ++ + + E F V G +K Sbjct: 576 QLPPGATQERTNNVLKQVSHYYLTKEKDNVESVFTVSGFGFSGQGQNNGLAFVSLKPWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIV 671 + + ++ + Sbjct: 636 RKGDQNKVTAIIQRAAVAFSKINDAMVY 663 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 81/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + + + +++ + ++ ++ P S Sbjct: 264 DVARVELGAENYGTIARYNGKPAAGIAVKLATGANALDTAKAVKTELARLAPYFPASLKT 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + + + + +++ + L + + + T Sbjct: 324 VYPYDTTPFVQLSIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 + G N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 EIVGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKKSMEQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + +V++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 61/166 (36%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 +L G+ ++ +LT IG S + +++ + M + +++ L Sbjct: 915 TSLRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAVDLMHKEGKG--LVEATLEAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G+V A +I Sbjct: 973 PILMTSLAFILGVMPLVISNGAGSGAQNAVGTGVMGGMVSATILAI 1018 >gi|146387264|pdb|2HQG|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants Of The Putative Proton Relay Pathway Length = 1053 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 74.7 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 57.8 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 72/234 (30%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + S+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMASLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|24987358|pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux Transporter Acrb gi|114793710|pdb|2DHH|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A Functionally Rotating Mechanism gi|114793711|pdb|2DHH|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A Functionally Rotating Mechanism gi|114793712|pdb|2DHH|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A Functionally Rotating Mechanism gi|114793726|pdb|2DR6|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A Functionally Rotating Mechanism gi|114793727|pdb|2DR6|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A Functionally Rotating Mechanism gi|114793728|pdb|2DR6|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A Functionally Rotating Mechanism gi|114793729|pdb|2DRD|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A Functionally Rotating Mechanism gi|114793730|pdb|2DRD|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A Functionally Rotating Mechanism gi|114793731|pdb|2DRD|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A Functionally Rotating Mechanism Length = 1053 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 74.7 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|192291545|ref|YP_001992150.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris TIE-1] gi|192285294|gb|ACF01675.1| protein-export membrane protein SecF [Rhodopseudomonas palustris TIE-1] Length = 372 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 116/302 (38%), Positives = 187/302 (61%), Gaps = 6/302 (1%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 L ++PD F R R IS + SI +I L FTHGLN+GIDF+GG L V Sbjct: 22 FGWLPSLRIVPDNTHFDFTRFRRISFPISAVLSIAAITLFFTHGLNFGIDFRGGTLLEVR 81 Query: 585 ANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A+ D++ +R L L +GD+ Q F G L+R+ QPG AQ ++ V+ + Sbjct: 82 AHSGAADIAGMRETLSKLSLGDVQLQQFGGPAEVLIRIAEQPGGDQAQQVAVQKVRAAL- 140 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + E+VGP++S EL+ G++G++++ + +L+Y+W RF+W FALGA+ + D Sbjct: 141 --GDSVDYRRVEVVGPRVSSELLAFGMLGLMVAILGILVYLWFRFEWQFALGAMIANVHD 198 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I T+GF ++ ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y + L+++ Sbjct: 199 IVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNE 257 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822 SIN TL RS+ T + +++L + ++GG I SF M FG ++V +SIFIAAPIL++ Sbjct: 258 SINSTLSRSIITHVTVTLALLALLLFGGHAIHSFTAVMMFGVVLVGTYTSIFIAAPILIY 317 Query: 823 IY 824 + Sbjct: 318 LG 319 >gi|319796462|ref|YP_004158102.1| protein-export membrane protein secf [Variovorax paradoxus EPS] gi|315598925|gb|ADU39991.1| protein-export membrane protein SecF [Variovorax paradoxus EPS] Length = 319 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 153/302 (50%), Gaps = 5/302 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR +S + ++ LF GL+ ++F GG + V + D Sbjct: 1 MEFFRIHKTIPFMRHALVLNIVSFVTFALAVFFLFHRGLHLSVEFTGGTVMEVAYKQSAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR + L ++ Q+F V+++ + T+ + V + I P Sbjct: 61 VGKVREVVAKLGYQEVQVQSFGTS----VQIRLPVAKGMTSTQQSDQVMGALKAIEPTVE 116 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +++ E VGP++ EL G+ + + + ++IY+ RF+W FAL + + D+ LGF Sbjct: 117 LRSNEFVGPQVGDELTSNGLKALAMVVVGIMIYLAFRFEWKFALATVLANLHDVVIILGF 176 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AAVL ++GYSVN+ VV++DR+R+N + Y ++ ++ID +I T+ Sbjct: 177 FAFFQWEFSLAVLAAVLAVLGYSVNESVVIFDRVRENFRRYRK-MTTAEVIDSAITSTIS 235 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M +GG + FA+ + GI SS F+AA I +++ R Sbjct: 236 RTIITHGSTQLVVLSMFFFGGPTLHYFALALTIGICFGIYSSCFVAAAIAMWLGVKREDL 295 Query: 831 AR 832 + Sbjct: 296 IK 297 >gi|262042821|ref|ZP_06015974.1| inner membrane multidrug efflux protein BpeB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039888|gb|EEW41006.1| inner membrane multidrug efflux protein BpeB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 1036 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 73/682 (10%), Positives = 186/682 (27%), Gaps = 42/682 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L L Q + ++P+ P + Sbjct: 8 RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + + ITL+F + +V LQ Sbjct: 54 AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ D + + S + D I Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPTTTQDDISDYVASNVKDPISRLNGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + D + L + T + + N+ G Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALQVQNDQIAAGQLGGTPALKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T A L+ + S Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ G+V Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + S+ + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + ++ + V ++ ++ + + +G + Sbjct: 520 QSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L+++ + + + E F V G +K Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDE 639 Query: 649 STIQNTEIVGPKISRELIRKGI 670 +++++ ++ + Sbjct: 640 NSVESIIKRATVAFSQIKDAMV 661 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + G + L V A+ V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680 + G + T K + ++ ++ I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T ++FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + +S ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 854 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLA 913 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+ ++ +LT IG S + +++ + + M+ + ++ L Sbjct: 914 ATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--IIEATLEASRMRLR 971 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G++ A +I Sbjct: 972 PILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATLLAI 1017 >gi|288919009|ref|ZP_06413350.1| protein-export membrane protein SecF [Frankia sp. EUN1f] gi|288349549|gb|EFC83785.1| protein-export membrane protein SecF [Frankia sp. EUN1f] Length = 411 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 79/306 (25%), Positives = 133/306 (43%), Gaps = 9/306 (2%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 L + F+ R +S + + + G GI+FKGG AN Sbjct: 1 MSMLGRLYRSEFHVDFVGRRRVWYVVSGVLLTICVLSMIVRGFTLGIEFKGGAVFQFPAN 60 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + V+ L + E + R+Q RV + + K+ Sbjct: 61 GGT-VEQVKDVLSDSGVDASDSVVQQLETSKQFRVQTPTLSDEETARVEDALAKRFNVAN 119 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706 P VG + K I G+I+ I ++IY+ +RF+W A+ A+ L+ D+ Sbjct: 120 PD-ENIAVSTVGSSWGSTITNKAIKGLIVFLILVMIYLSVRFEWKMAVAAMAALVHDLVV 178 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKS 764 T+G ++L G E + + AVLT++G+S+ D VVV+DR+R+N T ++ + + + Sbjct: 179 TMGIYSLVGFEVTPSTIIAVLTILGFSLYDTVVVFDRVRENTAGMATSSRRTYAEATNDA 238 Query: 765 INETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +NETL RS+ TS+ A I V + G + A+ GI SS+F A P+ Sbjct: 239 LNETLVRSLNTSLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPL 298 Query: 820 LLFIYD 825 L+ + Sbjct: 299 LVDLKR 304 >gi|288936790|ref|YP_003440849.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Klebsiella variicola At-22] gi|288891499|gb|ADC59817.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Klebsiella variicola At-22] Length = 1048 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 68/689 (9%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLSIL-----KLPVAQYPTIAPPA-------------ISITAMY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117 +Q + + ++ + ITL+F + +V Sbjct: 50 PGADAETVQNTVTQVIEQNMNGIDHLMYMSSNGDSTGTATITLTFESGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ + +++ + + S + D I + Sbjct: 110 KLALATPLLPQEVQQQGISVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISALKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTNTE-------------EFGNILLKVNQDGSQVRLRDVAKIELGGESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +++ + S + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGSHGATTGFFGWF 515 Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + V I+ + + + +G Sbjct: 516 NRMFDKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAWLFVRLPSSFLPDEDQGVFLSMA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + ++ + + E F V G +K Sbjct: 576 QLPAGATQERTQKVLDEMTNYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 636 RPGEENKVEAITGRAMGYFSQIKDAMVFA 664 Score = 75.9 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + K+ Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 62.0 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMSLMEELAGKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|269138366|ref|YP_003295066.1| RND family, acridine/multidrug efflux pump [Edwardsiella tarda EIB202] gi|267984026|gb|ACY83855.1| RND family, acridine/multidrug efflux pump [Edwardsiella tarda EIB202] gi|304558396|gb|ADM41060.1| RND efflux system, inner membrane transporter CmeB [Edwardsiella tarda FL6-60] Length = 1050 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 71/688 (10%), Positives = 184/688 (26%), Gaps = 51/688 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L + + ++P+ P + + Sbjct: 8 RPIFAWVLAIIMMLAGALAIM-----SLPVAQYPTVAPPA-------------VTISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ITL+F + +V Sbjct: 50 PGADAATVQNSVTQVIEQNMNGIDNLMYMSSTSDSAGNASITLTFEAGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D + + Sbjct: 110 KLQLAMPSLPQEVQQQGVSVDKASSSILLVAGFISEDGSLSQDDIADYVASNIKDPLSRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L + T + + NN G G Sbjct: 170 QGVGSVQLFGSQ-YAMRIWLDPNKLNKYNLTPVDVVSQIKVQNNQIAGGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + R + Sbjct: 229 QLNASIIVQTRL-------------KDPTEFGKILLKVQQDGSRVLLRDVARVELGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A L + Sbjct: 276 GTIARYNGKPAAGIAVKLATGANALDTAKAVKTELAKLAPYFPASLKTVYPYDTTPFVQL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L ++G ++ ++ Sbjct: 336 SIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAILEIVGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ S+++S+ A+ + A+ + ++ Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPALCATMLKPIAKGDHGVQTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D + + V ++ + + + +G + Sbjct: 516 NRLFEKSTHHYTDSVGRILRGTGRYLVIYLLIVVGMGLLFIRLPTSFLPEEDQGVLLTMA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + ++ + + E F V G +K Sbjct: 576 QLPPGATQERTNNVLKQVSQYYLTKEKDNVESVFTVSGFGFSGQGQNNGLAFVSLKPWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIV 671 + + ++ + Sbjct: 636 RKGDQNKVTAIIQRAAGAFSKINDAMVY 663 Score = 74.0 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 81/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + + + +++ + ++ K+ P S Sbjct: 264 DVARVELGAENYGTIARYNGKPAAGIAVKLATGANALDTAKAVKTELAKLAPYFPASLKT 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + + + + +++ + L + + + T Sbjct: 324 VYPYDTTPFVQLSIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAIL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 + G N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 EIVGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKKSMEQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + +V++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 61/166 (36%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 +L G+ ++ +LT IG S + +++ + M + +++ L Sbjct: 915 TSLRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAVDLMHKEGKG--LVEATLEAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G+V A +I Sbjct: 973 PILMTSLAFILGVMPLVISNGAGSGAQNAVGTGVMGGMVSATILAI 1018 >gi|114563865|ref|YP_751379.1| preprotein translocase subunit SecD [Shewanella frigidimarina NCIMB 400] gi|114335158|gb|ABI72540.1| protein-export membrane protein SecD [Shewanella frigidimarina NCIMB 400] Length = 616 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 159/522 (30%), Positives = 271/522 (51%), Gaps = 35/522 (6%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDLRGG H ++EVD + + + + RS L++E I Sbjct: 104 NLAPATPEWLEAVGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLREEKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 +R+ I + F D+ + + D + E + Sbjct: 164 RYAGIRKTPKGIAIKFRDAETVDQAETYLKTRSN--------DMTYTDASSGNEFMLLAT 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 +S + Q+ A++Q++ IR R++++G++E +QR G+ RI+++LPG QD +R +++L Sbjct: 216 MSDAYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275 Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V G + +G +++ +V ++G H+ GA F Sbjct: 276 GATASIEFRMVDDKADVSAAANGRVPAGAEVYQRREGGIAVLKKEVMLTGDHITGAQPTF 335 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321 D + +P V I+ D G F VT+DNIGKP+A + + Sbjct: 336 DEYS-RPQVAINLDAKGGSIFSNVTKDNIGKPMATLFIEYKDSGTRNPDGTVKMTRIEEV 394 Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364 A LA +LRAG+L + IVEER +G LG+++I G Sbjct: 395 ISVATIQARLGRNFVITGLEHTEAQSLALLLRAGALIAPVTIVEERTIGPSLGAENIQNG 454 Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423 A++ G+V++++FM+V Y +G +A+ ++ N+I+ + ++S++ A LTLP IAG+VL Sbjct: 455 VQAMIWGMVVVLVFMMVYYRAFGFIANLALLANLIMVVGVMSMIPGAVLTLPGIAGMVLT 514 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483 +G+AVD N+L+ ERIREE +SV ++ G+ A+STI D+NIT + ++LF G G Sbjct: 515 VGMAVDGNVLIFERIREELLGGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574 Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 AV+GFA+T+ + I SMFTAI R+++ + K++KS+ I Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRSIVNAVWGGKRVKSLSI 616 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 93/237 (39%), Gaps = 6/237 (2%) Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R+ ++++ I + + + + ++ TI Sbjct: 380 RNPDGTVKMTRIEEVISVATIQARLGRNFVITGLEHTEAQSLALLLRAGALIAPVTIVEE 439 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 +GP + E I+ G+ +I + +L+++ + ++ F A L+ ++ +G ++ Sbjct: 440 RTIGPSLGAENIQNGVQAMIWGMVVVLVFMMVYYR-AFGFIANLALLANLIMVVGVMSMI 498 Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G L +A ++ +G +V+ V++++R+R+ + S + I + Sbjct: 499 PGAVLTLPGIAGMVLTVGMAVDGNVLIFERIREELLG---GRSVQQAIHEGYGNAFSTIA 555 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAK 829 ++ F++ L + G + FA+ + GI + ++I I+ R K Sbjct: 556 DANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAVWGGKRVK 612 >gi|323702056|ref|ZP_08113724.1| protein-export membrane protein SecF [Desulfotomaculum nigrificans DSM 574] gi|323532938|gb|EGB22809.1| protein-export membrane protein SecF [Desulfotomaculum nigrificans DSM 574] Length = 292 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 154/293 (52%), Gaps = 8/293 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 ++ R IS+ + I L T GLN GIDF GG + + N+P + VR+ L Sbjct: 2 FHIIKLRKIWYIISLAIIVVGIISLATQGLNKGIDFTGGNIIELKFNKPTSMQDVRAALT 61 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 ++ D Q+ Y + I++ + +T+ E+VGP Sbjct: 62 EYKLEDSQVQSSGDN-------SYLIRTRALSQEESDKAFNGISQKLGGATMLRNELVGP 114 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 I +EL +K I+ ++++++ M+IYI RF++ + AI L+ D+ +G +LF IE + Sbjct: 115 VIGKELTQKAILALVVASVLMIIYITWRFEFLQGIAAILALLHDVLVMVGLASLFQIEID 174 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 T VAAVLT+IGYS+ND +V++DR+R+NM+L+ D+I+ ++ +T+ RS+ T + Sbjct: 175 STFVAAVLTIIGYSINDTIVIFDRIRENMRLHRKEE-LIDVINGALWQTMARSINTVLTV 233 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ + GGS I +F + G++ A SSIF A+P+ + + R Sbjct: 234 VFVLVSLFFLGGSTIHNFVGLLLIGVISGAYSSIFNASPLWYDFRRMQKQRKR 286 >gi|169835831|ref|ZP_02869019.1| Protein translocase subunit secF [candidate division TM7 single-cell isolate TM7a] Length = 323 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 84/301 (27%), Positives = 155/301 (51%), Gaps = 6/301 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I ++ ++ R +GIS + S+ LFT LN G+DFKGG + + ++ +D + V Sbjct: 1 MKINLKVIKHRKLYLGISAAMVLISLISLFTIKLNLGVDFKGGELIQLKYSKKIDQNAVS 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 S L SL + + + V ++ + + E Sbjct: 61 STLNSLIGKIPQMKAKRVQFSDTDNTVI-IRTEQMSGTQKAKVMSELKQNTGKFEVVKNE 119 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VG I +EL ++I +I ++IYI +RF++ +A+ I LI D+ G + Sbjct: 120 TVGAVIGKELTANAFQALLIGSILIIIYITVRFEFIYAIAGIVALIHDVIIAFGVITMLR 179 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-----ISFRDLIDKSINETLG 770 E + +AA+LT++GYS+ND +VV+DR+R+N+K + +SF ++I+KSIN+ Sbjct: 180 YEIDTPFIAAILTILGYSINDTIVVFDRIRENIKKNRSGRNKVSMSFGEIIEKSINQVFT 239 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 RS+YTS+ SV+ + + GG + +F++ + G++V SS+F+A+P++ + + + Sbjct: 240 RSIYTSLTTLFSVIVLLILGGDTLKTFSMTLFVGMLVGTYSSVFVASPLVYIMKKGKDEP 299 Query: 831 A 831 Sbjct: 300 K 300 >gi|152980474|ref|YP_001354627.1| acriflavin resistance transmembrane protein [Janthinobacterium sp. Marseille] gi|151280551|gb|ABR88961.1| acriflavin resistance transmembrane protein [Janthinobacterium sp. Marseille] Length = 1049 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 70/551 (12%), Positives = 160/551 (29%), Gaps = 46/551 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I G+L + ++P+ P +V+ Sbjct: 8 RPVFAWVLAIFIMLAGVLAI-----TSLPVSQYPNIAPP-------------QVVVTATY 49 Query: 63 DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 L + + +G+ + N +IT++F + A V Sbjct: 50 PGATAQTLDDSVTSLIEQEMNGADGLQYIESQSQANGVVQITVTFTPGTNPDLAAVDVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L+ V ++L + + T + ++ + + + R ++++ Sbjct: 110 RLKRVEARLPAAVTQQGVQVTKSRSNFLLFIGLSSTDGTLDPVALGDYLSRNVLNEVKRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q + DP++L L T + +S N G G + Sbjct: 170 PGVGQAQLFGT-ERAMRIWIDPTKLVGLNLTPSDVSSAISTQNALVAGGTLGDLPSPSTQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V +++ + + I Sbjct: 229 QIAATVVVNGQLT-------------SPEQFGNIVLRANKDGSSVRLRDVARIEVGGQSY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + + T L + Sbjct: 276 ATSGRLDGKPSSFIGVQLTPTANALGTATAVHKKMDELSKYFPAGVKYTIPYDTSKFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + ++ L+ + + ++ T A L L G ++ + ++ Sbjct: 336 SIEEVVKTLFEAIILVFLVMYLFLQNIRYTLIPTIVVPVALLGTFATLLLFGFSINVLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + + + Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLSPRDATRKAMGQITGALIGITLVLIAVFIP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFG G R F+++M S++ S+ A ++ A+ + +K ++ Sbjct: 456 MAFFGGAVGAIYRQFSLSMVASMVFSVLMAFTLTPALCATL-----LKPVEAGHHHEKRG 510 Query: 534 IPDCIAIQFMR 544 F + Sbjct: 511 FFGWFNRHFNK 521 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 94/279 (33%), Gaps = 9/279 (3%) Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 + + + + AN+ +R G + Sbjct: 222 LPSPSTQQIAATVVVNGQLTSPEQFGNIVLRANKDGSSVRLRDVARIEVGGQSYATSGRL 281 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGI 670 + + Q + V KK+ E+ + S+ + I + + Sbjct: 282 DGKPSSFIGVQLTPTANALGTATAVHKKMDELSKYFPAGVKYTIPYDTSKFVKISIEEVV 341 Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 + + I + + +++ + + L + + + T LFG N+ + ++ Sbjct: 342 KTLFEAIILVFLVMYLFLQNIRYTLIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLA 401 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 IG V+D +VV + + + +S RD K++ + G + ++ +PMA + Sbjct: 402 IGILVDDAIVVVENV--ERIMSEEGLSPRDATRKAMGQITGALIGITLVLIAVFIPMAFF 459 Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 GG+V F++ M +V + + + + + Sbjct: 460 GGAVGAIYRQFSLSMVASMVFSVLMAFTLTPALCATLLK 498 Score = 55.1 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 69/181 (38%), Gaps = 12/181 (6%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK---WY 691 E + + + L E G + + + +S IA+ + + ++ Sbjct: 834 EAMAEMEAMVAKLPPGFGFEWTGQSLEEKTSGSQAPALYALSLIAVFLVLAALYESTSIP 893 Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 F++ + L + LG L G+ ++ ++ ++G S + +++ + + L Sbjct: 894 FSVMLVVPLGI-FGALLGV-TLRGMPNDVYFKVGMIAVVGLSAKNAILIIEFAKD---LQ 948 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808 + ++++ + TS+A + VLP+ + G + + + G++ A Sbjct: 949 AQGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLVLASGAGSASQRAIGTGVMSGMITA 1008 Query: 809 A 809 Sbjct: 1009 T 1009 >gi|312797143|ref|YP_004030065.1| Acriflavin resistance plasma membrane protein [Burkholderia rhizoxinica HKI 454] gi|312168918|emb|CBW75921.1| Acriflavin resistance plasma membrane protein [Burkholderia rhizoxinica HKI 454] Length = 1057 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 66/574 (11%), Positives = 157/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G++ Q + ++P+ P + + + Sbjct: 8 RPIFAWVIAIILMLAGVVSIF-----QLPVAQYPTIAPPA-------------IQVSANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S ITL+FA + +V Sbjct: 50 PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGSATITLTFAPGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L ++ T +++ + + + + D I Sbjct: 110 KLQLATLLLPQVVQQLGTKVTKSSSSFLLVMAFVSKDGSMSKYDLANYVASKVQDPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + + N G G + Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDPTKLTNYSLTPIDVQQALLTQNVQVAGGQLGGTPAKPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + + + + + R + Sbjct: 229 MLQATITEATLL-------------NTPEQFGNILLKVNPDGSRVRLKDVARVELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + L + Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATAKAVRQKIDELSKYFPQGLVVEYPYDTTPFVKL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + ++ ++ + ++ T A+++ G ++ + S+ Sbjct: 336 SIEEVVKTLFEGIVLVFLVMYLFLQNLRATVIPTIAVPVVLLGTFAIMNAAGFSINVLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPREATRKAMGQITGALIGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + GG R F++T+ ++++S+ A+ + A+ I +K I + Sbjct: 456 VALSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPAGHHEQKTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F R+R S L + Sbjct: 511 FFGWFNRTFNRSRDKYHDGVQHVIRRSGRWLIIY 544 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + +++A + + ++++ Sbjct: 258 SRVRLKDVARVELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRQKIDELSKYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + + I + + + + + + +++ + + + + + Sbjct: 318 PQGLVVEYPYDTTPFVKLSIEEVVKTLFEGIVLVFLVMYLFLQNLRATVIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G N+ ++ ++ IG V+D +VV + + + +S R+ K++ Sbjct: 378 GTFAIMNAAGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G + ++ +P+A+ GGSV F++ + +V++ ++ + + Sbjct: 436 GQITGALIGVALVLSAVFVPVALSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492 Score = 71.6 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 8/253 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + + G + ++G ++ Q PG S Q Sbjct: 790 VRSASGTMVPFTSISTGHWTFGSPKLERYNGISAVEIQGQAAPGKSTGQAMAAMEAIAAK 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W I + L Sbjct: 850 LPAGIGFEWTGLSFQERQSGSQAPILYGISILVVFLCLA---ALYESWSIPFAVILVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L L G+E ++ +LT +G S + +++ + R+ +S Sbjct: 907 GVIGALLAVTLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARE--LQQKEGMSAMAAAM 964 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A + V P+AV G + + G++ A +IF+ Sbjct: 965 EAARLRLRPILMTSLAFILGVFPLAVSSGAGSGSQHAIGTGVIGGMLTATFLAIFMIPMF 1024 Query: 820 LLFIYDWRAKNAR 832 + I D + + Sbjct: 1025 YVVIRDRFGSDNK 1037 Score = 41.6 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 61/536 (11%), Positives = 137/536 (25%), Gaps = 34/536 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I ++I +GLL + P +G ++++ Sbjct: 536 RSGRWLIIYLAVIVAVGLLFM------RLPTSFLPDED-----------QGMMFVLVQA- 577 Query: 62 EDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLF 118 +++ +L ++ I SFA + ++ + Sbjct: 578 PSGSTQERTAKVLQDVQHYLLEDEKDIVESVFTVNG----FSFAGRGQNAGLAFVRMKDY 633 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 Q S + + + ++ N + + Q +G + Sbjct: 634 SQRHASDQSAQALVHRMFGHFATYKDAMVIPVNPPSIPELGTASGFDFELQDRGGLGH-D 692 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + + R L T + + Sbjct: 693 KLMAARNQLLGMAANDPMLALVRPNGLNDTPQFKINIDREKAQALGVSPSAIDQTFSIAW 752 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 V + ++ G + P P ++ A Sbjct: 753 ASQYVNNFLDTDGRIKKVYLQSDAPFRMNPEDLANWYVRSASGTMVPFTSISTGHWTFGS 812 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 + I A A A + + + + S Sbjct: 813 PKLERYNGISAVEIQGQAAPGKSTGQAMAAMEAIAAKLPAGIGFEWTGL----SFQERQS 868 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 S I +V + L + + L VI L ++L G + Sbjct: 869 GSQAPILYGISILVVFLCLAALYESWSIPFAVILVVPLGVIGALLAVTLRGLENDVFFQV 928 Query: 419 GIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G++ +GL+ + IL+ E RE + ++ S + I +++ ++ L Sbjct: 929 GLLTTVGLSAKNAILIVEFARELQQKEGMSAMAAAMEAARLRLRPILMTSLAFILGVFPL 988 Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530 G G+ + +L + F AI ++ + I + + Sbjct: 989 AVSSGAGSGSQHAIGTGVIGGMLTATFLAIFMIPMFYVVIRDRFGSDNKPAGEPTP 1044 >gi|170691383|ref|ZP_02882548.1| protein-export membrane protein SecD [Burkholderia graminis C4D1M] gi|170143588|gb|EDT11751.1| protein-export membrane protein SecD [Burkholderia graminis C4D1M] Length = 691 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 165/517 (31%), Positives = 270/517 (52%), Gaps = 24/517 (4%) Query: 13 MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 I + L A P +L + LGLDLRGG H +L+VD +N L Sbjct: 108 FIVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDS 158 Query: 73 YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132 + + R+ L+ I + ++ + ++FAD + A ++ + + P Sbjct: 159 DASDARTLLRDNNIRDGGVNRVNQTVVINFADQATADAAAKQLGRGIGELQWASQNSPDG 218 Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192 ++ + T + V A++Q++ + R++++G++E IQ+ G+ RI+++ Sbjct: 219 SVQLVGT-------FTPTVQKAVQDAALKQNITTLHNRVNELGVAEPVIQQQGTDRIVVE 271 Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248 LPG QD ++ + ++G TA + P N G + L+ ++ Sbjct: 272 LPGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQII 331 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305 +G + A+A FD +P V+I D G R V+RDNIGKP+A+VL + + Sbjct: 332 FTGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRSVSRDNIGKPMAMVLFEKGKGEVLT 390 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 Q+ + QI+G T + A LA +LRAGSL ++I+EER +G LG+D+I KG Sbjct: 391 VATIQSELGDRFQITGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGF 450 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 ++V G I +FMI Y +G+++ + +N++L +A+LS+L ATLTLP IA I L +G Sbjct: 451 HSVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLVAVLSMLQATLTLPGIAAIALALG 510 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 +A+D+N+L+NER+REE R ++ G++ A++TI DSN+T LIA V L FG G V Sbjct: 511 MAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPV 570 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 RGFAI + IL SMF+A+ R ++ KK Sbjct: 571 RGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 80/185 (43%), Gaps = 4/185 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 I +GP + + I+KG V+ A+ +++ + F + ++ L +++ + Sbjct: 429 MDIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFMIAYY-MLFGVISMIGLSVNLLLLV 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ L +AA+ +G +++ V++ +R+R+ ++ + I Sbjct: 488 AVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGAPPQLAIQNGYAHA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ + + +G + FAI GI+ + S++F + I+ Y + Sbjct: 545 WATILDSNVTTLIAGVALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKK 604 Query: 829 KNARI 833 K + Sbjct: 605 KLKSL 609 >gi|146387263|pdb|2HQF|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants Of The Putative Proton Relay Pathway Length = 1053 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAANAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|238792076|ref|ZP_04635712.1| Acriflavine resistance protein B [Yersinia intermedia ATCC 29909] gi|238728707|gb|EEQ20225.1| Acriflavine resistance protein B [Yersinia intermedia ATCC 29909] Length = 1039 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 70/556 (12%), Positives = 154/556 (27%), Gaps = 46/556 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S ITL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDKLLYMSSQSSNSGSASITLTFQAGTDPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + ++++ + + + D + Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMLAFVSTDGSMDKQDIADYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT + N+ G D+ Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDVVSAIQSQNSQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEQFRAITLRVNQDGSLVTLGDVAKIEMGAERY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E A L + Sbjct: 276 DYLSRFNGQAASGMSIKLASGANELQTDELVKARIAELAPFFPHGLEAKIAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + + + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + A+ +K I Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIQPGHHHAKRG 510 Query: 534 IPDCIAIQFMRARFWG 549 F R Sbjct: 511 FFGWFNRMFDRNTHRY 526 Score = 84.7 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 86/235 (36%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + +++ ++ P Sbjct: 260 VTLGDVAKIEMGAERYDYLSRFNGQAASGMSIKLASGANELQTDELVKARIAELAPFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + + R+ KS+ + Sbjct: 380 FAVLSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ +PMA +GG+ F+I + +V++ ++ + + Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 8/177 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ + L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLV 1026 >gi|320016317|gb|ADV99888.1| multidrug efflux protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 1050 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITIAANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 PGVGDAQLFGSQ-YAMRIWMDPHKLNNYKLTPVDVINAIKIQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPSGLTVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFG G R F+IT+ ++++S+ A+ + A+ +++ K + Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIKKGDHGPKTGFFGWF 515 Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + V + ++ + + +G V Sbjct: 516 NNMFEKSTHHYTDSVANILRSTGRYLVIYLAIVIGMAVLFMRLPSSFLPEEDQGVFLAMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L + + + F V G +K Sbjct: 576 QLPAGATQERTQKVLNHVTDYYLDKEKNVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RKGEQNKVPAIVSRASAAFSKIKDGMVFA 664 Score = 78.6 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 88/247 (35%), Gaps = 6/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + +++ + ++ K+ Sbjct: 258 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + I + + +++ + + L + + + Sbjct: 318 PSGLTVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495 Query: 823 IYDWRAK 829 + K Sbjct: 496 MLKPIKK 502 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGMSHQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+E ++ +LT IG S + +++ + + M + +S+ L Sbjct: 915 ATLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLESVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G++ A +I Sbjct: 973 PILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018 >gi|297616939|ref|YP_003702098.1| protein-export membrane protein SecF [Syntrophothermus lipocalidus DSM 12680] gi|297144776|gb|ADI01533.1| protein-export membrane protein SecF [Syntrophothermus lipocalidus DSM 12680] Length = 284 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 156/282 (55%), Gaps = 10/282 (3%) Query: 545 ARFWGVGISILFSICSICLLFTHGL--NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 R W +S+L I + L G N GIDF GG L V +PV++ VRS L+SL Sbjct: 6 HRKWFYLLSLLLIIPGLVSLLWPGRGLNKGIDFTGGSLLRVKFEQPVEVQQVRSVLDSLD 65 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 +G+ S Q ++ + + + ++ + V + + E VGP I Sbjct: 66 LGESSIQRSGD-------REFFIRTRMLTQEDRDKLVTQLEKRVGKVDVPSEESVGPTIG 118 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 +EL K ++ ++I+++ ML+YI RF++ F +GAI L+ D+ LG F+LF ++ + Sbjct: 119 KELTMKAVLSILIASVLMLVYISFRFEFSFGVGAIVALLYDVVLVLGVFSLFRLQVDGAF 178 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 VAA+LT++GYS+ND +VV+DR+R+N+ + I+KSI +TL RS+ T +A Sbjct: 179 VAAILTILGYSINDTIVVFDRIRENLGFKKKG-DLAETINKSIMQTLNRSINTVLAVVFV 237 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +L + V+GG I F++ + G++ SSIF+A+PI + Sbjct: 238 LLALLVFGGETIKVFSLALLIGVISGCYSSIFVASPIYYDLK 279 Score = 39.3 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 26/133 (19%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W +L ++ GL+ L P ++ G+D GGS +L V + Sbjct: 8 KWFYLLSLLLIIPGLVSLL---------------WPGRGLNKGIDFTGGS--LLRVKFEQ 50 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQG 121 V ++RS L +G S+++ ++ I ++ + ++ + Sbjct: 51 PVE------VQQVRSVLDSLDLGESSIQRSGDREFFIRTRMLTQEDRDKLVTQLEKRVGK 104 Query: 122 VNSKLNVDPKKNL 134 V+ + Sbjct: 105 VDVPSEESVGPTI 117 >gi|119716617|ref|YP_923582.1| protein translocase subunit secF [Nocardioides sp. JS614] gi|119537278|gb|ABL81895.1| protein translocase subunit secF [Nocardioides sp. JS614] Length = 412 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 79/309 (25%), Positives = 146/309 (47%), Gaps = 12/309 (3%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 L +I F+ ++ IS++ + S+ L GL+ GI+F GG + V Sbjct: 3 KFSRLGNDLYSGDKSIDFVGRKWLWYAISVVIIVGSLLGLAVKGLDMGIEFVGGAEYKVK 62 Query: 585 --ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + +R+++ + I V +Q +P + ++ + Sbjct: 63 VASADQALADQLRTDVAATGIDAAQQPVVTTSGKDAVLIQVKPLTTAENEQIKNTIADT- 121 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701 T N +GP +E+ ++ G+++ I ++I+IW F+ W ++GAI L Sbjct: 122 --TGTDPTQINATEIGPSWGKEIAKRSGTGLVVFLILVVIFIWAYFREWKMSVGAIVALA 179 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK-LYTTSISFRDL 760 D+ T+G +AL G E V +LT++G+S+ D VVV+D++R+N K L + ++ Sbjct: 180 HDVVITVGVYALSGFEVTPATVTGLLTILGFSLYDTVVVFDKVRENTKNLRESRTTYAKA 239 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFI 815 + ++N+TL RS+ TS+ A I V + G S + A+ + G+ A SSIFI Sbjct: 240 ANLAVNQTLVRSINTSVVALIPVGVILYVSAVQLGASTLKDLALALFVGMAAGAYSSIFI 299 Query: 816 AAPILLFIY 824 A P+++ + Sbjct: 300 ATPLVVQLK 308 >gi|119897194|ref|YP_932407.1| preprotein translocase subunit SecF [Azoarcus sp. BH72] gi|119669607|emb|CAL93520.1| protein-export membrane protein SecF [Azoarcus sp. BH72] Length = 310 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 82/302 (27%), Positives = 156/302 (51%), Gaps = 2/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ + ++ L T GL+ ++F GG + V + + Sbjct: 1 MEFFRIKKDIPFMRHALVFNVISLITFLLAVFFLATRGLHLSVEFTGGTLVEVSYSEAAE 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R +L + D+ Q+F ++ L+RL + G ++ P + Sbjct: 61 LEPIRQSLAADGYTDVLVQHFGSTRDVLIRLPNREGADSKGVAER-VMATLEKSAGPKAE 119 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL G + +++ + ++IY+ +RF+W + I + D+ LGF Sbjct: 120 LRRVEFVGPQVGKELASDGAMALLLVVVGIVIYLALRFEWRLGVATIIANLHDVIIILGF 179 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AA L ++GYSVN+ VVV+DR+R+ + ++S ++D +I T+ Sbjct: 180 FAFFQWEFSLAVLAATLAVLGYSVNESVVVFDRVRETFRK-KRNLSTEQVVDHAITSTIS 238 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + + VL M ++GG + FA+ + GI SS+ +A+P+ +++ R + Sbjct: 239 RTMITHGSTQMMVLSMLIFGGETLFYFALALTIGICFGIYSSVLVASPLAIWLGVSREQF 298 Query: 831 AR 832 + Sbjct: 299 VK 300 >gi|37527712|ref|NP_931057.1| acriflavin resistance protein B [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787148|emb|CAE16224.1| acriflavin resistance protein B [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1049 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 72/692 (10%), Positives = 179/692 (25%), Gaps = 43/692 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ + GLL + + + ++P+ P + Sbjct: 8 RPIFAWVIAIITMLAGLLAIM-----KLPVAQYPTIAPPAI---------SISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + N ITL+F + +V LQ Sbjct: 54 ATTVQNTVTQVIEQNMNGIDNLVYMSSDSDSAGNMNITLTFEAGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ + + S + D + Sbjct: 114 AMPLLPQEVQQQGIRVDKSTTSFLMVAGFISEDGSMSQDDISDYVGATVKDPLSRVTGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + +P +L TT + NN G Sbjct: 174 DTMLFGNQ-YAMRIWLNPDKLVNYKMTTLDVINAIKAQNNQIAAGQLGGTPPVPGQRLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + + Sbjct: 233 SIIAQTRLT-------------SPEEFSNILLRVNTDGSQVRLKDVAKVELGAQSYNIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T + + + S + Sbjct: 280 RYNGKPAAGIGVKLATGANALDTSKAVKEALNNMEPFFPHGLKIVYPYDTTPFVKISINE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ +V Sbjct: 340 VVKTLVEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILATFGYSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + S + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPKEATRKSMGQIQSALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++++S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGSHGKQTGVFGWFNRIF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D I + V L + ++ + +G + V Sbjct: 520 DKSTHHYTDSIGRILRNTGRYLVIYVFLVAGMAVMFTRLPSSFLPEEDQGVLLTMVQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 L+ + + + F V G +K Sbjct: 580 GATQEQTEKVLDKVSDYFNTEEKDRVVSVFTVSGFGFSGQGQNTGLGFISLKDWGERPGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 + + + + + I AI Sbjct: 640 ENKVPAIVARASAHFQTIKEGMVFAFNIPAIV 671 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q +I + + +++ ++ ++ + Sbjct: 258 SQVRLKDVAKVELGAQSYNIIARYNGKPAAGIGVKLATGANALDTSKAVKEALNNMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + + + + +++ + + L + + + Sbjct: 318 PHGLKIVYPYDTTPFVKISINEVVKTLVEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + A++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFAILATFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + V +M +PMA +GGS F+I + +V++ ++ + + Sbjct: 436 GQIQSALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 7/201 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 + + L + G L + +S I + + + ++ W Sbjct: 841 DAMALMEELASKLPNGIGFDWTGMSYQERLSGNQAPALYALSLIVVFLCLAALYESWSIP 900 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L I L G++ ++ +LT IG S + +++ + + M+ Sbjct: 901 FSVMLVVPLGIVGALLATTFRGLDNDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 960 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A S Sbjct: 961 G--LIEATLDAVRMRLRPILMTSLAFMLGVIPLVLSNGAGSGSQNAVGTGVLGGMIAATS 1018 Query: 811 SSIFIAAPILLFIYDWRAKNA 831 +IF + I +K A Sbjct: 1019 LAIFFVPVFFVVIRRRFSKKA 1039 >gi|148652748|ref|YP_001279841.1| preprotein translocase subunit SecD [Psychrobacter sp. PRwf-1] gi|148571832|gb|ABQ93891.1| protein-export membrane protein SecD [Psychrobacter sp. PRwf-1] Length = 625 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 152/522 (29%), Positives = 261/522 (50%), Gaps = 41/522 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG VLEVD + + L+ S+++RS L+ E + Sbjct: 103 NLAQTTPEWLRSIGAKPLKLGLDLRGGVRFVLEVDMNKALEQRLKTTSNDVRSSLRAERV 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + ++ + L F D ++ + L+ + + Sbjct: 163 AAKGINVVEQGLVLHFKDVDLRDKAQRIIQ-------RDHGAQFDMQALMDDQGPALRLN 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ +A+ Q++ +R RI ++G+SE+ +Q GS+RI+++LPG QD + +++L Sbjct: 216 YNEATLKEINEYAVGQNLTTLRNRIAELGVSEALVQSQGSNRIVVELPGVQDTAEAKRVL 275 Query: 207 GTTAKMSFHKVLPNNSK-----KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V N+ DG L+ + ++G + + Sbjct: 276 GRTANLEFRLVADENTTYAGGIPPAGTEAFPYMTLDGPPSLLNRQPILTGEKV-QGATSG 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296 + P V+I+ D G + T+ +GK + Sbjct: 335 LDENGAPEVNITLDTAGGKLMQNATKSAVGKQMAVLFIENKQKIAYSKDPNTGETIETRT 394 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + QA+ +I+G + A LA +LR+G+L + VEER +G L Sbjct: 395 PYAETKIISQANIQAVLGSSFRITGLNSNAEAAELALLLRSGALAAPMYFVEERTIGPSL 454 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G +I G + G +L+ LFMI+ Y +G++A+ ++ N+I+ +A+LS+LGA+LTLP Sbjct: 455 GQQNIDDGLFSTKIGYLLVFLFMILFYRLFGVIANIALAFNLIIMIAVLSILGASLTLPG 514 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL IG+AVD+N+L+ ERIREE + ++ GF RA+S+IFD NIT L+ ++ Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREEIAEGVRPKSAIVAGFDRAFSSIFDGNITTLLVAII 574 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 LF G G ++GFAIT+ + IL S+FTAI + RA++ I + Sbjct: 575 LFSIGSGPIKGFAITLAIGILSSLFTAIIVTRALVHLIYGNR 616 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 78/185 (42%), Gaps = 4/185 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +GP + ++ I G+ I + + +++ + ++ F + A L ++ + Sbjct: 442 MYFVEERTIGPSLGQQNIDDGLFSTKIGYLLVFLFMILFYRL-FGVIANIALAFNLIIMI 500 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ G L +A ++ IG +V+ V++++R+R+ + + I + Sbjct: 501 AVLSILGASLTLPGIAGIVLTIGMAVDANVLIFERIREEIAEGVR---PKSAIVAGFDRA 557 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ + + + G I FAI +A GI+ + ++I + ++ IY R Sbjct: 558 FSSIFDGNITTLLVAIILFSIGSGPIKGFAITLAIGILSSLFTAIIVTRALVHLIYGNRK 617 Query: 829 KNARI 833 ++ Sbjct: 618 SVDKL 622 Score = 50.1 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 27/119 (22%), Gaps = 25/119 (21%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M W L + I L ALPN P ++V Sbjct: 1 MHYPAWKYFLIVTVLVIAGLYALPNLYPDEPA-------------------------VQV 35 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + L + GI N L + + + + L Sbjct: 36 TSASAGTELTEEVLTQSTQLLDEAGIAYHDPTFSGNSALLRVENGAEQRKAQEVLRQQL 94 >gi|123443310|ref|YP_001007284.1| multidrug efflux protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090271|emb|CAL13137.1| multidrug efflux protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1050 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIIMLAGSLAIM-----KLPVAQYPTIAPPA-------------ISISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMKQEDIADYVGSNVKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNYGLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQIMLKVNTDGSQVRLKDVAIVQLGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFG G R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D + + V + + L + +G V Sbjct: 516 NRMFEKSTHHYTDSVGNILRSTGRYLVIYLAIVIGMGVLFLRLPTSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + + + F V G +K Sbjct: 576 QMPAGATQERTQKVLDQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RPGEQNKVPAIVARASAAFSQIKDGLVFA 664 Score = 77.4 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + +++ + ++ K+ Sbjct: 258 SQVRLKDVAIVQLGAENYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 61.2 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMDLMQELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + VLP+ + G + + G++ A Sbjct: 958 G--LVESTLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|87199241|ref|YP_496498.1| hydrophobe/amphiphile efflux-1 HAE1 [Novosphingobium aromaticivorans DSM 12444] gi|87134922|gb|ABD25664.1| Hydrophobe/amphiphile efflux-1 HAE1 [Novosphingobium aromaticivorans DSM 12444] Length = 1044 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 81/684 (11%), Positives = 191/684 (27%), Gaps = 41/684 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I GL ++++P P + + Sbjct: 9 RPIFAWVLAIVIMAAGLFAV-----STMGVEQYPDIAPPTV---------SINATYGGAD 54 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122 V + ++ L + ++IT++F + +V + Sbjct: 55 ASTVENSVTQVLEQQLKGLDGLLYFNSNSSNGSSQITVTFDKGTDPDTAQVQVQNAISRA 114 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 S+L ++ + + +++ + + S + D I E Sbjct: 115 VSRLPAVVQQQGVNVNKSQSDMLMVVSIYDKTGRTTNADISDYLSTHFQDPISRVEGVGN 174 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + DP RL + + + N G D Sbjct: 175 AQIFGA-SYAMRIWLDPLRLAAVQLMPSDVVTALQAQNTQVAAGEIGANPAPDGQRLNAT 233 Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302 V + + + + ++ + Sbjct: 234 VTARSRL-------------QTPEEFENIVVKTQVDGSVVRLRDVARVEMGEESYGSISR 280 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 S + + T + A L + S Sbjct: 281 FNGMPATGLSVSLASGANAMKTAQLVKDTVAELSKDLPAGYEVAYPRDSSTFVKLSIEEV 340 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 + LV+IV+F+ + + L+ ++ + ++ T +LSL G T+ ++ G+VL Sbjct: 341 VWSLGEAIVLVVIVMFVFLQSWRATLIPAIAVPVVLLGTFGVLSLAGYTINTLTMFGMVL 400 Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 IGL VD I+V E + + + S + S + + V + FFG Sbjct: 401 AIGLLVDDAIVVVENVERVMHEEGLSPLDATVKSMDEITSALIGITLVLTAVFVPMAFFG 460 Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529 G R F++T+ ++ +S+ A+ A+ +++ + + + + Sbjct: 461 GSTGAIYRQFSVTIVSAMTLSVLVALVFTPALCATLLKPVAEHEKPGGRFFRRFNDGYAN 520 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 +A R W + + + + + + +G + + Sbjct: 521 LEGRYRTRLARVVGRPLPWMMVFAGITLGMVLLYVRLPTSFLPAEDQGNLSISYQLPVGS 580 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 R+ L + + D + F+V + Q G + + ++K Sbjct: 581 TSEQTRAVANQLSDYIRTSEKEDVKAVFVVMGRGQAGSAQNAGQGFILLKDWSERSGKEH 640 Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673 + R+ I + Sbjct: 641 SAAAIAERLNAYFRKSRDAQIFVL 664 Score = 82.8 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + L +++ ++++ ++++ +P Sbjct: 260 VRLRDVARVEMGEESYGSISRFNGMPATGLSVSLASGANAMKTAQLVKDTVAELSKDLPA 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707 + I + + + + + ++I +++ W L + + + T Sbjct: 320 GYEVAYPRDSSTFVKLSIEEVVWSLGEAIVLVVIVMFVFLQSWRATLIPAIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G +L G N + ++ IG V+D +VV + + ++ +S D KS++E Sbjct: 380 FGVLSLAGYTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMHEEGLSPLDATVKSMDE 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + ++ +PMA +GGS F++ + + ++ ++ + + Sbjct: 438 ITSALIGITLVLTAVFVPMAFFGGSTGAIYRQFSVTIVSAMTLSVLVALVFTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 65.5 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 79/267 (29%), Gaps = 13/267 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 G + + S S+ + + N + Sbjct: 775 PYRNEPSDLGQWFVRSNGGQMAPFSAFASSHWTQGPVRLDRFNGVPAQQLQGSGAPGVSS 834 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + + K + + + L+ S + + + Sbjct: 835 GDAMKIMEDNAAKLDGNFSVAWSGLSYQERAASSQSLLLYTA------SIFFIFLCLAAL 888 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W + + + L I + L G ++ A+LT IG S + +++ + + Sbjct: 889 YESWSVPVAVLLVIPLGIIGAVLAVTLRGYNNDIYFQVALLTTIGLSAKNAILIVE-FAE 947 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803 + + L + TS+A V+P+A+ G + + + Sbjct: 948 --AALARGVEPVAAALEGARLRLRPIIMTSVAFIAGVIPLAIADGAGANGRRAIGTGVMG 1005 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKN 830 G++ A +IF+ + + W + Sbjct: 1006 GMLSATILAIFLVPLFFVLVKGWFRRK 1032 >gi|148245036|ref|YP_001219730.1| preprotein translocase SecD subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326863|dbj|BAF62006.1| preprotein translocase SecD subunit [Candidatus Vesicomyosocius okutanii HA] Length = 615 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 177/519 (34%), Positives = 291/519 (56%), Gaps = 36/519 (6%) Query: 32 LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + + +++ +SLGLDLRGG H +LEVD ++ + +ELR L+K+ + S+ Sbjct: 108 VPVWLASLGGKAMSLGLDLRGGVHFLLEVDMKAVISASMDTAYNELRVLLRKDRL-YKSI 166 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 +Q N I + F S K+ + + L LL T + ++I +S++ Sbjct: 167 KQKGNSIVIHFKRSELKDEASQLIKSELS----------DLVLLSNTDDLLLNIGISESV 216 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 Q A++Q++ +R R++++G++E IQ+ G RI++QLPG QD +R +++LG A Sbjct: 217 QKQAKKSALKQNITTLRNRVNELGVAEPIIQQQGLERIVVQLPGVQDTARAKEILGAVAT 276 Query: 212 MSFHKVLPNN------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 + F V N G + DG L++ V +G ++ GAT+ + Sbjct: 277 LEFRLVDEKNDPQIAIQSGRLPIGSKLYYFKDGRPLLLKSHVITTGENITGATSGVHQEN 336 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLTAP 306 + P+V+I+ D G R F T+ + + R + Sbjct: 337 NTPMVNITLDSAGGRAMFNTTKKYLHHRMAVVFIENKVETIVKNGKTIKKRTTTRDIINA 396 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 + I S + Q++G I+ A LA +LRAGSL + I+EER +G LGSD+I KG Sbjct: 397 ATIKGIFSSRFQVTGIDNIKEARNLALLLRAGSLSAPIEIIEERTIGPSLGSDNITKGVI 456 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +I+ G +L++LFM + Y +G+VA+ ++ LN+++ L++LSLL ATLTLP IAGIVL +G+ Sbjct: 457 SILVGFILVLLFMAMRYQLFGMVANVALTLNLVMILSILSLLQATLTLPGIAGIVLTVGM 516 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 AVD+N+L+ ERI+EE N+++ ++ +G+ +A TI D+NIT LIA ++LF FG G ++ Sbjct: 517 AVDANVLIFERIKEEMVINRNLPKAISVGYDKALLTILDANITTLIAALILFSFGTGVIK 576 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GFAIT+ + I+ SMFTAI + RA++ I KK++ I I Sbjct: 577 GFAITLSIGIITSMFTAIIVSRAIINKIYSGKKLEEISI 615 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 104/261 (39%), Gaps = 4/261 (1%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 N + V V+ V + N K G Sbjct: 353 MFNTTKKYLHHRMAVVFIENKVETIVKNGKTIKKRTTTRDIINAATIKGIFSSRFQVTGI 412 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + + + + I +GP + + I KG++ +++ I +L+++ +R Sbjct: 413 DNIKEARNLALLLRAGSLSAPIEIIEERTIGPSLGSDNITKGVISILVGFILVLLFMAMR 472 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F + A L L++ L +L L +A ++ +G +V+ V++++R+++ Sbjct: 473 YQL-FGMVANVALTLNLVMILSILSLLQATLTLPGIAGIVLTVGMAVDANVLIFERIKEE 531 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 M + + I ++ L + ++ I+ L + +G VI FAI ++ GI+ Sbjct: 532 MVINR---NLPKAISVGYDKALLTILDANITTLIAALILFSFGTGVIKGFAITLSIGIIT 588 Query: 808 AASSSIFIAAPILLFIYDWRA 828 + ++I ++ I+ IY + Sbjct: 589 SMFTAIIVSRAIINKIYSGKK 609 >gi|115376253|ref|ZP_01463494.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Stigmatella aurantiaca DW4/3-1] gi|310823975|ref|YP_003956333.1| rnd multidrug efflux transporter [Stigmatella aurantiaca DW4/3-1] gi|115366751|gb|EAU65745.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Stigmatella aurantiaca DW4/3-1] gi|309397047|gb|ADO74506.1| RND multidrug efflux transporter [Stigmatella aurantiaca DW4/3-1] Length = 1051 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 85/609 (13%), Positives = 171/609 (28%), Gaps = 39/609 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L +I +G + P + ++P Sbjct: 8 RRPVFATVLSIIIVLVGAISI-----PSLPVAQYPDLALPQVT---------VQATYLGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120 + V + + + L+ S ++ITL+F SR + A V + Sbjct: 54 SAEVVESAVTTVLERELNGLEGMRYISSSSTNDGTSQITLTFDPSRDVDLAAVDVQNRVS 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 +++L + L + ++ + S D + Sbjct: 114 TASARLPAEVNAVGLTINKAQTQLLMTFGLFDPEGRYEREFLSNYADVYIRDALRRVPGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DPSRL T + N G Q Sbjct: 174 GDVRIFGERRFAMRLWLDPSRLAARSLTAQDVVTALREQNFQVAAGQVGQPPSPPDQSYQ 233 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + +S + + I + Sbjct: 234 LSVRVQGRLS-------------EPSEFGNLIIQRGATGELVRLKDVGSAELGAENYGQL 280 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + L+A P + A S Sbjct: 281 LRFNGRDAVGLGIFQLPDANALDVRDGVVKELDRLKARFPPGMTYELATDTTRAVSASIE 340 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T A LV++V+F+ + + L+ ++ ++++ T A +SL G +L ++ G+ Sbjct: 341 EVLHTLAEAIALVVLVVFIFLHGWRSVLIVALTLPVSLVGTFAFVSLFGFSLNTLTLFGL 400 Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFD-SNITALIATVVLF 478 L GL VD I+V E + ++ + + + G + S + + + + + V F Sbjct: 401 TLATGLVVDDAIVVIENVERVMEQERLNAREATERGMRQVASAVVAIALVLSAVFIPVAF 460 Query: 479 FFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS------- 529 F G R FA+T+ SI +S A+++ AM ++R + Sbjct: 461 FPGTTGAIYRQFALTLAFSIALSALCALTLSPAMCARLLRPSHGTKWRVFRWVDDGVNGL 520 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 R + +L + + T + +G + + V Sbjct: 521 RRGYDWLLRRLLGRLRWVVTGVFVVLVGLTVLLYRVTPTGFIPDEDQGYLIVSVQGPEGT 580 Query: 590 DLSVVRSNL 598 L R L Sbjct: 581 SLEYTRQIL 589 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 77/194 (39%), Gaps = 8/194 (4%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + L+ +K + + +T E++ + + + + I++ Sbjct: 306 DGVVKELDRLKARFPPGMTYELATDTTRAVSASIEEVLHTLAEAIALVVLVVFIFL---H 362 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W L TL + + T F +LFG N + + G V+D +VV + + Sbjct: 363 GWRSVLIVALTLPVSLVGTFAFVSLFGFSLNTLTLFGLTLATGLVVDDAIVVIENV--ER 420 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805 + ++ R+ ++ + + V ++ +P+A + G+ FA+ +AF I Sbjct: 421 VMEQERLNAREATERGMRQVASAVVAIALVLSAVFIPVAFFPGTTGAIYRQFALTLAFSI 480 Query: 806 VVAASSSIFIAAPI 819 ++A ++ ++ + Sbjct: 481 ALSALCALTLSPAM 494 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 70/167 (41%), Gaps = 7/167 (4%) Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 ++ + + + + + +++ + + I + + I LGF L G+ ++ ++ Sbjct: 871 LLIFGLGIVFVFLVLAAQYESYALPMVVILAVPVAILGALGFQNLRGLPNDVFCQVGLVM 930 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 L+G + + +++ + + ++ S D + L + TS+A + VLP+ + Sbjct: 931 LVGLASKNAILIVE-FAEQLR--GEGKSVVDAAVSAAETRLRPILMTSIAFLLGVLPLVL 987 Query: 789 ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G S S + G++++ ++ + + + R + + Sbjct: 988 ASGAGASARKSLGTAVFGGMLLSTFINLIFIPVLYVLVETARTRVLK 1034 >gi|302550156|ref|ZP_07302498.1| protein-export membrane protein SecF [Streptomyces viridochromogenes DSM 40736] gi|302467774|gb|EFL30867.1| protein-export membrane protein SecF [Streptomyces viridochromogenes DSM 40736] Length = 369 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 92/309 (29%), Positives = 148/309 (47%), Gaps = 13/309 (4%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L + F++ R G+SIL +I +I L GLN GI+F+GG N + Sbjct: 10 RLHRGEVGYDFVKNRKIWYGLSILITITAIVGLTVRGLNMGIEFQGGAVFNTPKNTSASV 69 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 S E+ D Q +R+Q D+ A ++ + + S Sbjct: 70 SQAEEYAETASGHDAIVQKLGDG---SLRIQVAGIDTDAANKIKNTLADDLK---IDSEQ 123 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 N E+VGP ++ K G+ I I ++IY+ I F+W AL A LI DIT T+G + Sbjct: 124 INAELVGPSWGEQIANKAWQGLGIFLILVVIYLAIAFEWRMALAAFVALIHDITITVGIY 183 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769 AL G E V +LT++GYS+ D VVV+D +++ K T ++ D+ ++SIN TL Sbjct: 184 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDITKQTRWTYSDVANRSINSTL 243 Query: 770 GRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 RS+ T++ A + V + GG V + ++ + G+ A SSIFIA P++ + Sbjct: 244 VRSINTTVVALLPVGGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLK 303 Query: 825 DWRAKNARI 833 + + + Sbjct: 304 EREPQMKAL 312 >gi|148284576|ref|YP_001248666.1| preprotein translocase subunit SecF [Orientia tsutsugamushi str. Boryong] gi|146740015|emb|CAM80099.1| protein-export membrane protein secF [Orientia tsutsugamushi str. Boryong] Length = 320 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 108/300 (36%), Positives = 172/300 (57%), Gaps = 2/300 (0%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 LI I I F+R R +SIL I SI L LN F GGI L V + LS Sbjct: 20 LILSKINIDFIRLRKLNYVVSILLIIFSIASLLIFKLNLSTSFIGGINLEVKISPLQQLS 79 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT-EIVPLSTI 651 +RS L + +G +S NF E F +++ + D+ + VK + ++ T+ Sbjct: 80 SIRSALNNADLGKLSIHNFGAEDVFSIKIANKSQDNNNIGLITNKVKSILETQLNCKVTL 139 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + T +GP++SR L++ I + ++ + + IY+WIRFKW F +G + ++ D ++GF Sbjct: 140 RKTSFIGPQVSRYLVKSSIKALALALVGIAIYVWIRFKWQFGVGILVAIMHDAILSMGFM 199 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLG 770 ++ G+EF+L++VAA+LT+IGYSVND V++YDR+R+NM +S D+I+ SI TL Sbjct: 200 SISGLEFDLSSVAALLTVIGYSVNDSVIIYDRIRENMNKNNISSKPIEDIINISIRATLS 259 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T ++ L + ++GG+ I SF+I + GI+V SSIF++APIL+ K Sbjct: 260 RTILTVFTTLLANLALILFGGAAIKSFSILVFIGIIVGTYSSIFVSAPILMLFNIQHQKK 319 >gi|289665550|ref|ZP_06487131.1| preprotein translocase subunit SecD [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667766|ref|ZP_06488841.1| preprotein translocase subunit SecD [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 614 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 143/520 (27%), Positives = 252/520 (48%), Gaps = 39/520 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDL GG H ++VD+ + L +++++R+ L+ I Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I +S + + + + L + + I++ Sbjct: 163 AYRSVERRADNSIQVSLGEGADADAARVALGK------------AQPTLTYDVSGQNIAV 210 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + Q+ S AIEQ++ +R R++ +G+SE TIQR G RI+++LPG QD + ++L Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + F V+ N++ G L+ + ++G + A+ Sbjct: 271 IGATASLEFRAVVDGNAEDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASV 330 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302 + D V + G R F T + + + Sbjct: 331 STDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 P A GK + A LA +L++GSL ++ VEE +G LG++++ Sbjct: 391 EALPATRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A+V + ++F + Y +G + ++ N+++ +A++SL GAT+TLP AG+ L Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG Sbjct: 511 SVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G ++GFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + G + V+ + + E + + +Q Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALPATRIAGVFGKNFQTT 409 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 K + ++GP + E + +G+ V+ S + L++ I Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F L+ ++ + +LFG L A + +G SV+ V++ +R+R+ Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++L + + I + G + ++ I + + +G + FA+ M GI Sbjct: 529 ELRL---GVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585 Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833 + ++I ++ + + IY R K + Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612 Score = 41.6 bits (95), Expect = 0.65, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 30/121 (24%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59 + W L ++ + L ALPN + + Sbjct: 2 LEFPRWKYFLILLVLAVSALYALPNIYQKDPS---------------------VQITASR 40 Query: 60 -VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 DD + + + LK GI ++ + + + + + + D + Sbjct: 41 GAQLDDALRSRID-------ADLKAAGITPKAVTKEGDSLMVRLPSLQAQTRANDVLRQQ 93 Query: 119 L 119 L Sbjct: 94 L 94 >gi|118462611|ref|YP_882649.1| preprotein translocase subunit SecF [Mycobacterium avium 104] gi|118163898|gb|ABK64795.1| protein export protein SecF [Mycobacterium avium 104] Length = 435 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 132/318 (41%), Gaps = 15/318 (4%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 L A + + R GIS +I + G +GIDF GG + + A Sbjct: 38 RHSFLSRLYTGTGAFEVVGRRRLWFGISGAIVAVAILSIALRGFTFGIDFNGGTTVSMPA 97 Query: 586 ---NRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEM 637 + V + V+ D G + + + + Sbjct: 98 AGTHGTVHTAQVQEVFRKTLGTDPESVVVVGNGAAATVQIRSETLTNDQTTKLRNALFDA 157 Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 K + P + V ++ K ++ +++ + +YI +R++ Y L AI Sbjct: 158 FGPKGADGKPSKQAISDSAVSETWGDQITDKALIALVVFLALVGLYITVRYERYMTLAAI 217 Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSI 755 + D+T T G ++L G E V +LT++G+S+ D V+V+D++ +N + +T Sbjct: 218 AAMFFDLTVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTRDFQHTNRR 277 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAAS 810 +F + + +IN+T RS+ TS+ + VL + + G + A+ GI+V Sbjct: 278 TFAEQANLAINQTFMRSINTSLIGVLPVLALMVVAVWLLGVGTLKDLALVQLVGILVGTY 337 Query: 811 SSIFIAAPILLFIYDWRA 828 SSIF+A P+L+ + + Sbjct: 338 SSIFVATPLLVTLRERTE 355 >gi|325123144|gb|ADY82667.1| hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family [Acinetobacter calcoaceticus PHEA-2] Length = 1037 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 82/693 (11%), Positives = 205/693 (29%), Gaps = 49/693 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I +G + L ++++P P G ++ + Sbjct: 9 RPIFAWVLSICIMALGTISIL-----TLPIEQYPDIAPP-----------GVNVT--ANY 50 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ L +K S Q +I+LSF + + +V Sbjct: 51 PGASAKTVEDSVTQILEQQIKGIDGLLYFSSSSSSAGQARISLSFDQNTNPDTAQVQVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + S+L + ++ + T + S+++ + +++ S ++ D + Sbjct: 111 AVNQALSRLPQEVQQQGITVTKSQGDSLLVFALYDESGTRSSVDISDYMVSTLQDPLSRV 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L + + N G RD Sbjct: 171 DGVGEITVFGAQ-YAMRIWLDPHKLNSYGLMPSDVRTAIEAQNTQITAGELGALPTRDGQ 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + I + + + Sbjct: 230 ALNATVTALSRL-------------QTVSQFENIILRTQTNGAVVLLKDVARVERGAESY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + + + T E L A + Sbjct: 277 QTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEA 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T A LV+IV+F+ + + L+ ++ + ++ T +LS+LG ++ ++ Sbjct: 337 SVNGVIKTLAEAIVLVIIVMFLFLQSWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTL 396 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMHEQNLDARQATLISMQEISGALVGIAMVLAAVFLP 456 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F++T+ ++++S A+++ A+ +++ K + F Sbjct: 457 MAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLLKPANEKHKQRKFFTWFNY 516 Query: 534 IPDCIAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + + + + + V + ++ + + +G + + Sbjct: 517 KVEQGQTGYRTKLVAVLGKPKVFMVIFVGITALLGWQYTRMNTGFLPQEDQGSVMVQFST 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 L+ + ++ + + F+V + G +K Sbjct: 577 PVGTTLAETERVGNQIADYFLTKEKNNLNVIFMVMGRNNAGSGQNVGMAFAGLKHWDDRE 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 +T + + L + + +A+ Sbjct: 637 GSENTAEAVIARANAYFKSLRNARVQVLSPAAV 669 Score = 78.6 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 84/210 (40%), Gaps = 8/210 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + + + + + ++ +++ +I+ +++ I M +++ Sbjct: 302 ETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEASVNGVIKTLAEAIVLVIIVMFLFLQ 361 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + T G ++ G N + A++ IG V+D +VV + + Sbjct: 362 ---SWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTLFAMVLAIGLLVDDAIVVVENV- 417 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 ++ ++ R S+ E G V +M LPMA +GGSV F++ + Sbjct: 418 -ERVMHEQNLDARQATLISMQEISGALVGIAMVLAAVFLPMAFFGGSVGIIYRQFSVTLV 476 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +V++A ++ ++ + + + + Sbjct: 477 SAMVLSAIVALTLSPALCATLLKPANEKHK 506 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 8/212 (3%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIISAIAML 681 Q S A K+ E+V N + G +L + I + S I + Sbjct: 822 VQIQGSAAAGESSGGAMDKMQELVDQQQGFNLQWSGLSYQEKLAGGQTIWLYLASIIFIF 881 Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 + + ++ W + + + L + + +L G ++ A+LT IG S + +++ Sbjct: 882 LCLAALYESWSIPVSVMLVIPLGLIGAVVAASLAGFVNDIYFQVAMLTTIGLSAKNAILI 941 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797 + + D I + + L + TS+A VLP+AV G Sbjct: 942 VEFA---AAKLEAGQALMDAIIEGAGQRLRPIIMTSLAFVAGVLPLAVSTGAGAVSRKEI 998 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 I + G++ SIF L + K Sbjct: 999 GIAVTGGMISGTLLSIFFVPLFFLLVRRLTNK 1030 >gi|146283378|ref|YP_001173531.1| preprotein translocase subunit SecF [Pseudomonas stutzeri A1501] gi|145571583|gb|ABP80689.1| protein-export membrane protein SecF [Pseudomonas stutzeri A1501] Length = 303 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 89/292 (30%), Positives = 156/292 (53%), Gaps = 5/292 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I FM R +++L ++ S+ L GLN+G+DF GG + + RPV+L VR Sbjct: 1 MKRVINFMGVRHVAFALTVLLTVASLGSLVVKGLNFGLDFTGGTLIELGYERPVELEQVR 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 L D Q+F + LVR+ Q + + +++ E Sbjct: 61 GQLVQAGFTDAVVQSFGATTDVLVRMP----GDDPQLGERIASALRNADGGNAVSVKRVE 116 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + EL +G +G++++ +L+Y+ RF+W F GA+ +L D+ LG F+ F Sbjct: 117 FVGPAVGEELRDQGGLGMLLALGGILVYVAFRFQWKFGFGAVLSLFHDVIVVLGVFSFFQ 176 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 I F+LT +AAVL +IGYS+ND +V++DR+R+N + + I+ S +TL R++ T Sbjct: 177 ISFDLTVLAAVLAVIGYSLNDTIVIFDRIRENFR-MLRKAELLENINISTTQTLLRTMAT 235 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 S++ ++V + V+GG + F++ + G+ V SS+++A +L+++ R Sbjct: 236 SVSTLLAVGALMVFGGENLWGFSLALLIGVGVGTYSSVYVAGTLLVWLKLTR 287 >gi|229588909|ref|YP_002871028.1| acriflavine resistance protein B [Pseudomonas fluorescens SBW25] gi|229360775|emb|CAY47633.1| acriflavine resistance protein B [Pseudomonas fluorescens SBW25] Length = 1053 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 70/694 (10%), Positives = 188/694 (27%), Gaps = 46/694 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L L + ++++P+ P +D + Sbjct: 8 RPIFAWVIALVIMLVGALSIL-----KLPINQYPAIAPTA-----ID----IQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVASDSNSDGSMTITATFNQGTNPDIAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + S I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKSVKNFLMVIGLVSEDGSMTKDDLSNYIVSNIQDPISRTAGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T +S N G + Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVSTAISAQNVQVATGQLGGLPALPGNQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + I Sbjct: 233 TIIGKTRL-------------QTAEQFGNILMKVNADGSQVRLHDIARIELGGQNYSISA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T + A L P +V S S Sbjct: 280 QFNGNPASGMAIKLASGANALDTAKAIRATVASLEPFFPPGMKAVVPYDTTPVVTESISG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+F+ + + ++ ++ + ++ T +L+ G T+ ++ G++ Sbjct: 340 VVHTLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMI 399 Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEHLSPKEATVKSMGQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG + F+IT+ ++ +S+ A+ A+ + + + Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKPIDPEKHGQPKRGFFGWFNRT 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + + +++F+ + + +G I V Sbjct: 520 FDRGVLSYERGVGNMIKHKIPAFLVYALIFAGMIWLFMRIPAAFLPDEDQGVIFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIG--DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + ++ ++ + K + + + + + Sbjct: 580 VGSSAERTQKVIDDMRSYLLNDKEGEPGEGKGVKSVFTVNGFNFAGRGQSSGLAFVMLKP 639 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + + + ++ ++ + + Sbjct: 640 WDERDASTSVFEIAKRAQGYFMQTFQDAMVFAIV 673 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L + Q IS Q + + +++ + + + Sbjct: 258 SQVRLHDIARIELGGQNYSISAQFNGNPASGMAIKLASGANALDTAKAIRATVASLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + ++ + + + + +++ + + + T+ + + Sbjct: 318 PPGMKAVVPYDTTPVVTESISGVVHTLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMILAIGLLVDDAIVVVENV--ERVMAEEHLSPKEATVKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPAL 492 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 90/270 (33%), Gaps = 16/270 (5%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + + V LS + S +S N L Sbjct: 785 RMSPEDLNKWYVRSDSGKMVPLSAIASGKWIFGSPKLSRYNGVAAMEILGTPAPGYSTGD 844 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + K+ I T + E + + S + + + + ++ Sbjct: 845 AMAEVERIAKQLPAGIGYAWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 898 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + + + L + L ++ G+ ++ +L +G + + +++ + ++ Sbjct: 899 SWSIPIAVVLVVPLGVVGALIATSMRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 956 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ + ++ L + TSMA + VLP+A+ G + + G+ Sbjct: 957 -LHEQGKGIVEAAIEASRMRLRPIIMTSMAFILGVLPLAISSGAGSGSQHAIGTGVIGGM 1015 Query: 806 VVAASSSIFIAA---PILLFIYDWRAKNAR 832 + A +IF + I D + K + Sbjct: 1016 ITATVLAIFWVPLFFATVSAIGDRKPKETK 1045 >gi|189183339|ref|YP_001937124.1| preprotein translocase subunit SecF [Orientia tsutsugamushi str. Ikeda] gi|189180110|dbj|BAG39890.1| protein-export membrane protein SecF [Orientia tsutsugamushi str. Ikeda] Length = 308 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 169/295 (57%), Gaps = 2/295 (0%) Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 I F+R R +SIL I SI L LN F GGI L + + L +RS L Sbjct: 14 NIDFVRLRKLNYIVSILLVIFSIASLLIFKLNLSTSFIGGINLEIKISPLQQLGSIRSAL 73 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT-EIVPLSTIQNTEIV 657 + +G +S NF E F +++ + D+ + + VK + ++ T++ T + Sbjct: 74 NNADLGKLSIHNFGAEDVFSIKIANKSQDNNSIGLITNKVKSILETQLNCKVTLRKTSFI 133 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++S L++ I + ++ + + IY+WIRFKW F +G + ++ D +LGF ++ G+E Sbjct: 134 GPQVSSYLVKSSIKALALALVGIAIYVWIRFKWQFGVGILVAIMHDAILSLGFMSISGLE 193 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTS 776 F+L++VAA+LT+IGYSVND V++YDR+R+NM +S D+I+ SI+ TL R++ T Sbjct: 194 FDLSSVAALLTVIGYSVNDSVIIYDRIRENMNKNNSSSKPIEDIINISISATLSRTILTV 253 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ L + ++GG+ I SF+I + GI+V SSIF++APIL+ K Sbjct: 254 FTTLLANLALILFGGAAIKSFSILVFIGIIVGTYSSIFVSAPILMLFNIQHQKKR 308 >gi|78356862|ref|YP_388311.1| preprotein translocase subunit SecF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219267|gb|ABB38616.1| protein translocase subunit secF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 356 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 99/340 (29%), Positives = 163/340 (47%), Gaps = 49/340 (14%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVDL 591 +I I I F+ R + +S + + + LF G +YGIDF GG+ + V +R V+ Sbjct: 5 IIKPDINIDFVGLRKISLCLSGVVLLVGLLSLFIKGGPSYGIDFAGGVVVQVQFDRSVEP 64 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLST 650 + ++S+LE L + +S Q F + ++ + ++ + + Sbjct: 65 AAIKSSLEDLNLPGLSVQRFGDSADNEYLVRVSQAGENPEDLRSDIAQAFTGKLPGASYE 124 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--------------------- 689 I+ E+VGPK+ +L K + + + + + IYI RF+ Sbjct: 125 IKRLEMVGPKVGADLRSKAVEALYFAVLLIAIYISGRFEQRWFTAGIMAAALATGMYLLG 184 Query: 690 -------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 FALGA+ LI D+T T+G F+L EF+LT VA Sbjct: 185 QLGISKAGLVFAALLLTLALCWKLKLNFALGALVALIHDVTITVGLFSLLDKEFDLTIVA 244 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT+IGYS+ND ++VYDR+R+ + S +I+ +IN+TL R++ TS + ++ Sbjct: 245 ALLTIIGYSLNDTIIVYDRIREYRLSHQN-ESLGSVINLAINQTLSRTILTSGTTLLVII 303 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + GG VI FA+ M G+ V SSIF+A+PILL + Sbjct: 304 TLYFLGGGVIHDFALAMLIGVGVGTYSSIFVASPILLMLG 343 >gi|303232862|ref|ZP_07319546.1| export membrane protein SecF [Atopobium vaginae PB189-T1-4] gi|302481052|gb|EFL44128.1| export membrane protein SecF [Atopobium vaginae PB189-T1-4] Length = 365 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 138/304 (45%), Gaps = 5/304 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 +QF+ R +GIS + I ++ L GL +GI+F+GG + V + Sbjct: 1 MRSHFKRELQFIPHRRVFLGISCILVILAVIGLVVRGLVFGIEFQGGTTIDFHNTGEVTI 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 +RS L + D Q E ++ + D + + Sbjct: 61 DQMRSALSAAGETDPVVQTTQSESGSGFLVRSETTDPNVANDHAAKAGQSLGLPDKSY-- 118 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 +GP +++ R I+ + ++ Y+ +R+++ ++ A+ L+ D+ TLG + Sbjct: 119 -TVTTIGPDWGQDITRASAFAFGIAIVLIIAYVSLRYEFKMSITAVLALMHDLVITLGIY 177 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINETL 769 A + VAA+LT++GYS+ D VV ++RM +N K +++ + + SINE + Sbjct: 178 AWAQVAITPNVVAALLTIMGYSLYDTVVEFNRMDENAKHLHDGVHVTYYQICNFSINEVI 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T++ + + V M + GG + FA+ M G ++ SS +A+P+L Sbjct: 238 VRTINTTITSVVPVCIMLILGGETLKDFALAMLIGELLGTWSSFGVASPLLAMWKTREKH 297 Query: 830 NARI 833 A++ Sbjct: 298 WAKL 301 >gi|293609911|ref|ZP_06692213.1| hypothetical protein HMPREF0013_02062 [Acinetobacter sp. SH024] gi|292828363|gb|EFF86726.1| hypothetical protein HMPREF0013_02062 [Acinetobacter sp. SH024] Length = 1037 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 82/693 (11%), Positives = 206/693 (29%), Gaps = 49/693 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I +G + L ++++P P G ++ + Sbjct: 9 RPIFAWVLSICIMALGTISIL-----TLPIEQYPDIAPP-----------GVNVT--ANY 50 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ L +K S Q +I+LSF + + +V Sbjct: 51 PGASAKTVEDSVTQILEQQIKGIDGLLYFSSSSSSAGQARISLSFDQNTNPDTAQVQVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + S+L + ++ + T + S+++ + +++ S ++ D + Sbjct: 111 AVNQALSRLPQEVQQQGITVTKSQGDSLLVFALYDESGTRSSVDISDYMVSTLQDPLSRV 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L + + N G RD Sbjct: 171 DGVGEITVFGAQ-YAMRIWLDPHKLNSYGLMPSDVRTAIEAQNTQITAGELGALPTRDGQ 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + I + + + Sbjct: 230 ALNATVTALSRL-------------QTVSQFENIILRTQTNGAVVLLKDVARVERGAESY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + + + T E L A + Sbjct: 277 QTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEA 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T A LV+IV+F+ + + L+ ++ + ++ T +LS+LG + ++ Sbjct: 337 SVNGVIKTLAEAIVLVIIVMFLFLQSWRATLIPAIAVPVVLLGTFGVLSVLGYNINTLTL 396 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + +N + + + + + Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMHEQNVDARQATLISMQEISGALVGIAMVLAAVFLP 456 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F++T+ ++++S A+++ A+ +++ K + F Sbjct: 457 MAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLLKPANEKHKQRKFFTWFNR 516 Query: 534 IPDCIAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + + + + + + + ++ + + +G + + Sbjct: 517 KVEQGQSGYRTKLVAVLGKPKVFMIIFVGITALLGWQYTRMNTGFLPQEDQGSVMVQFST 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 L+ + ++ + + F+V + G +K Sbjct: 577 PVGTTLAETERVGNQIADYFLTKEKNNLNVIFMVMGRNNAGSGQNVGMAFAGLKHWDDRE 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 +T + + L + + +A+ Sbjct: 637 GSENTAEAVIARANAHFKSLRNARVQVLSPAAV 669 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 84/210 (40%), Gaps = 8/210 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + + + + + ++ +++ +I+ +++ I M +++ Sbjct: 302 ETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEASVNGVIKTLAEAIVLVIIVMFLFLQ 361 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + T G ++ G N + A++ IG V+D +VV + + Sbjct: 362 ---SWRATLIPAIAVPVVLLGTFGVLSVLGYNINTLTLFAMVLAIGLLVDDAIVVVENV- 417 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 ++ ++ R S+ E G V +M LPMA +GGSV F++ + Sbjct: 418 -ERVMHEQNVDARQATLISMQEISGALVGIAMVLAAVFLPMAFFGGSVGIIYRQFSVTLV 476 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +V++A ++ ++ + + + + Sbjct: 477 SAMVLSAIVALTLSPALCATLLKPANEKHK 506 Score = 76.7 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 8/212 (3%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIISAIAML 681 Q S A K+ ++V N + G +L + I + S I + Sbjct: 822 VQIQGSAAAGESSGGAMDKMQQLVDQQQGFNLQWSGLSYQEKLAGGQTIWLYLASIIFIF 881 Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 + + ++ W + + + L + + +L G ++ A+LT IG S + +++ Sbjct: 882 LCLAALYESWSIPVSVMLVIPLGLIGAVVAASLAGFVNDIYFQVAMLTTIGLSAKNAILI 941 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797 + + D I + + L + TS+A VLP+AV G Sbjct: 942 VEFA---AAKLEAGQALMDAIIEGAGQRLRPIIMTSLAFVAGVLPLAVSTGAGAVSRKEI 998 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 I + G++ SIF L + K Sbjct: 999 GIAVTGGMISGTLLSIFFVPLFFLLVRRLTNK 1030 >gi|58616782|ref|YP_195981.1| preprotein translocase subunit SecF [Ehrlichia ruminantium str. Gardel] gi|58416394|emb|CAI27507.1| Protein-export membrane protein SECF [Ehrlichia ruminantium str. Gardel] Length = 289 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 100/283 (35%), Positives = 162/283 (57%), Gaps = 3/283 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I + F + R + + S L I S+ L+ G+ +G DF GGI + + N+ VD+ + Sbjct: 7 INVDFFKYRVYAISCSSLLVILSVLLVLFKGICFGTDFAGGIIIELRVNQ-VDIKEINLK 65 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L+ S Q+F N + ++++ ++ +T +E +K + EI+ T + V Sbjct: 66 LQERGFVGFSVQSF-NNNNKELMIRFKNEQNLDKTDSIEKIKGILKEILGDVTYLKIDYV 124 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ + I +GI ++ S + M +Y+WIRF+W FALG I L+ D+ TLG +L GIE Sbjct: 125 GPQVGYKQIFEGIYAILFSLLGMFLYLWIRFQWRFALGGIIALLHDVVLTLGLISLLGIE 184 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNL++ AA+LT+IGYSVND VV+YDR+R+ ++ ++I+ SIN TL R++ TS Sbjct: 185 FNLSSTAAILTVIGYSVNDSVVIYDRIRELLRKMLKEK-ITEIINISINATLSRTILTSG 243 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 I+ +P+ + + +I + FGI V SSIFIA L Sbjct: 244 TTMIAAIPLMLLCSGTVRDLSIIIFFGIAVGTYSSIFIATTSL 286 >gi|293394991|ref|ZP_06639279.1| RND superfamily drug:proton (H+) antiporter [Serratia odorifera DSM 4582] gi|291422519|gb|EFE95760.1| RND superfamily drug:proton (H+) antiporter [Serratia odorifera DSM 4582] Length = 1044 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 65/551 (11%), Positives = 154/551 (27%), Gaps = 46/551 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + + Sbjct: 8 RPIFAWVLAIILCLTGALAIF-----SLPVEQYPNLAPP-------------NVRISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S + + +TL+F +V Sbjct: 50 PGASAQTLENTVTQIIEQNMTGLDNMMYMSSQSTNTGRATVTLTFDAGTDPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L ++ + + + ++++ + + I+ D + Sbjct: 110 QLQAAIKRLPQAVQQQGVTVSKSGDTTLMMVAFVSTDGSMDKQDIADYIVSNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L TT + N G D Sbjct: 170 NGVGSMDVYGSQ-YAMRIWLDPNKLNSYQLTTGDVVSAIQSQNAQVAVGQLGGTPSIDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + ++ Sbjct: 229 ALNATINAQSQL-------------QTPEQFRQIALRVNQDGSLVTLGDVASVELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T E L V Sbjct: 276 DYLSRYNGMPAAGMNIKLASGANELQTDELVKAKINELSQYFPRGLEAKVAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIQDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSACGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLPPREATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ S+++S+ A+ + A+ + +K + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATL-----LKPVAKGHHHGKRG 510 Query: 534 IPDCIAIQFMR 544 F R Sbjct: 511 FFGWFNRMFNR 521 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V S + D + + + + +++ ++++ P Sbjct: 260 VTLGDVASVELGGENYDYLSRYNGMPAAGMNIKLASGANELQTDELVKAKINELSQYFPR 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKVAYETTPFVKASIQDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + G N + A++ IG V+D +VV + + + + R+ KS+ + Sbjct: 380 FAILSACGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 8/196 (4%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 + + + L E L + IS + + + + ++ W Sbjct: 836 TAMNEMERLVSQLPNGFGLEWTAMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIP 895 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + + L G+E ++ +LT+IG S + +++ + + L Sbjct: 896 FSVMLVVPLGVIGAVAATWLRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNQK 952 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 ++ L + TS+A VLPM + G + + G++ A Sbjct: 953 GQDLTAATLEAARMRLRPILMTSLAFIFGVLPMTISQGAGSGSQHAVGTGVMGGMISATL 1012 Query: 811 SSIFIAAPILLFIYDW 826 +IF + + Sbjct: 1013 LAIFFVPLFFVLVRRR 1028 >gi|172035330|ref|YP_001801831.1| RND multidrug efflux transporter [Cyanothece sp. ATCC 51142] gi|171696784|gb|ACB49765.1| RND multidrug efflux transporter [Cyanothece sp. ATCC 51142] Length = 1041 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 82/561 (14%), Positives = 170/561 (30%), Gaps = 42/561 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + + +I +GL+ L LD+FP P + + +E Sbjct: 9 KRPVFSSVCALLILLVGLISLL-----NLPLDQFPEITP-------------TRVQVEST 50 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 + ++ + L + I S + IT++F SR + + V Sbjct: 51 YNGASAEVVENAVTNILERQINGVEGLRYISSSSSNSGTSSITVTFDSSRNPDLASVDVQ 110 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + V S+L ++ + T + ++ D + S + +D + Sbjct: 111 NQVSVVQSQLPDAVQRTGVQVTRQSNSLLLGIGLYSDNNRYDNVFLSNYADQYLVDALKR 170 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + DP++L TT + N G D Sbjct: 171 LDGVGNVRIFGERRYAMRLWLDPNKLASRGLTTQDVVNALSEQNLQVGAGKIGAEPAPDG 230 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ + ++ + + + + Sbjct: 231 QQFQFDLRAISQL-------------KDPKEFENLLLKTDENGGLVYFKDVGRAELGAQD 277 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + + L A P +V Sbjct: 278 YSSFLRFRGQEAVGMGIYQRTGSNALEVAKRVEQEMDRLSAFFPPDLQYVVAFDTTQFIE 337 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S S T + GLV+IV+ + + + L+ +I L +I T A + L ++ + Sbjct: 338 ESLSEVVKTLFMAVGLVIIVILIFLQNWRTTLIPALTIPLALIGTFAFIKLFNFSINSLT 397 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL--DMGFSRAYSTIFDSNITALIAT 474 + G+ L G+ VD I+V E+I + + + I S + + Sbjct: 398 LFGLTLATGMVVDDAIIVVEQINRYIEDENMSPQAAASKAMGELSSAVIATSLVLMAVFI 457 Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 V FF G R FA+T+ SI+IS F A+++ ++ ++ + + + F Sbjct: 458 PVAFFPGTTGALYRQFALTIAFSIVISTFLALTLTPSLCALLLEKGQ--KLPGFLGTIFN 515 Query: 533 LIPDCIAIQFMRARFWGVGIS 553 + + R +S Sbjct: 516 QFNHFLDWVKGQYRRSLHTLS 536 Score = 89.8 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 82/201 (40%), Gaps = 8/201 (3%) Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + ++ + + +T + E+++ + V + I +LI++ W Sbjct: 310 EQEMDRLSAFFPPDLQYVVAFDTTQFIEESLSEVVKTLFMAVGLVIIVILIFLQ---NWR 366 Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 L T+ L + T F LF N + + G V+D ++V +++ N + Sbjct: 367 TTLIPALTIPLALIGTFAFIKLFNFSINSLTLFGLTLATGMVVDDAIIVVEQI--NRYIE 424 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808 ++S + K++ E + TS+ +P+A + G+ FA+ +AF IV++ Sbjct: 425 DENMSPQAAASKAMGELSSAVIATSLVLMAVFIPVAFFPGTTGALYRQFALTIAFSIVIS 484 Query: 809 ASSSIFIAAPILLFIYDWRAK 829 ++ + + + + K Sbjct: 485 TFLALTLTPSLCALLLEKGQK 505 Score = 61.2 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 6/140 (4%) Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L I + L I L L G ++ ++ LIG + + +++ + +L Sbjct: 898 PLIIIVAVPLAILGALTAQLLRGFANDVYCQIGLVMLIGLASKNAILIVEFAN---QLRD 954 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809 + ++ E L + T+++ + + P+ V G S + G++VA+ Sbjct: 955 EGLPLVKAAIEAAQERLRPILMTAVSTLLGIFPLVVATGAGSGSRQSLGTAVFGGMLVAS 1014 Query: 810 SSSIFIAAPILLFIYDWRAK 829 S+F+ + + I K Sbjct: 1015 FLSLFVVPILYIVIKMTTEK 1034 >gi|312959497|ref|ZP_07774014.1| hydrophobic/amphiphilic exporter-1 [Pseudomonas fluorescens WH6] gi|311286214|gb|EFQ64778.1| hydrophobic/amphiphilic exporter-1 [Pseudomonas fluorescens WH6] Length = 1053 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 73/694 (10%), Positives = 181/694 (26%), Gaps = 46/694 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L L + ++++P+ P +D + Sbjct: 8 RPIFAWVIALVIMLVGTLSIL-----KLPINQYPAIAPTA-----ID----IQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVASDSNSDGSMTITATFNQGTNPDIAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + S I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKSVKNFLMVIGLVSEDGSMTKDDLSNYIVSNIQDPISRTAGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T +S N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNYQLTPVDVSTAISAQNVQVATGQLGGLPALPGTQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + I Sbjct: 233 TIIGKTRL-------------QTAEEFGKILMKVNADGSQVRLRDISRIELGGQNYSISA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T + A L P +V S S Sbjct: 280 QFNGKPASGMAIKLASGANALDTAKAIRATVASLEPFFPPGMKAVVPYDTTPVVTESISG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+F+ + + ++ ++ + ++ T +L+ G T+ ++ G++ Sbjct: 340 VVHTLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMI 399 Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEHLSPKEATVKSMGQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG + F+IT+ ++ +S+ A+ A+ + + + Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKPIDPEKHDQPKRGFFGWFNRT 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + I+F + +G I V Sbjct: 520 FDRGVISYERGVGNMIKHKYPAFFVYLIIFVGMIWLFTRIPSAFLPEEDQGVIFAQVQTP 579 Query: 587 RPVDLSVVRSNLES--LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + ++ + + K + + + + + Sbjct: 580 VGSSAERTQKVIDDMRAFLLNDKEGEPGEGKAVKSVFTVNGFNFAGRGQSSGLAFVMLKP 639 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 Q+ V + ++ + + Sbjct: 640 WDERDASQSVFEVAKRAQGYFFGAFKDAMVFAIV 673 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L + Q IS Q + + +++ + + + Sbjct: 258 SQVRLRDISRIELGGQNYSISAQFNGKPASGMAIKLASGANALDTAKAIRATVASLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + ++ + + + + +++ + + + T+ + + Sbjct: 318 PPGMKAVVPYDTTPVVTESISGVVHTLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMILAIGLLVDDAIVVVENV--ERVMAEEHLSPKEATVKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPAL 492 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 84/249 (33%), Gaps = 13/249 (5%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + + V LS + S +S N L Sbjct: 785 RMSPEDLNKWFVRSDSGKMVPLSAISSGKWIYGSPKLSRYNGVAAMEILGTPAPGYSTGD 844 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A V + K+ + T + E + + S + + + + ++ Sbjct: 845 AMAEVERIAKQLPAGVGYAWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 898 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + + + L + L +L G+ ++ +L +G + + +++ + ++ Sbjct: 899 SWSIPIAVVLVVPLGVVGALIATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 956 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ + ++ L + TSMA + VLP+A+ G + + G+ Sbjct: 957 -LHEQGKGIVESAIEASRMRLRPIIMTSMAFVLGVLPLAISSGAGSGSQHAIGTGVIGGM 1015 Query: 806 VVAASSSIF 814 + A +IF Sbjct: 1016 ITATVLAIF 1024 >gi|255067980|ref|ZP_05319835.1| protein-export membrane protein SecF [Neisseria sicca ATCC 29256] gi|255047757|gb|EET43221.1| protein-export membrane protein SecF [Neisseria sicca ATCC 29256] Length = 311 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 165/299 (55%), Gaps = 3/299 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + VD Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLITKGLNFSVEFTGGTVMEVQYQQGVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ R L++L++GD+ Q K+ ++RL + G + AQ + V + + + P T Sbjct: 61 VNKTREKLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMELLKKEQPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + +++Y+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIVYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + + +ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPSMRGHTVPQVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRE 297 >gi|268316465|ref|YP_003290184.1| acriflavin resistance protein [Rhodothermus marinus DSM 4252] gi|262333999|gb|ACY47796.1| acriflavin resistance protein [Rhodothermus marinus DSM 4252] Length = 1029 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 78/669 (11%), Positives = 194/669 (28%), Gaps = 42/669 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R V+ +I G++ + +P+ P Sbjct: 9 RRPVLAVVFSLVILLFGIVS-----FTYLGVREYPAVDPPIIT---------VATNYRGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + +E + + R ++ IT+ F E A+ V + Sbjct: 55 NAEVIETQITEPLEESINGIAGIRSITSVSRDGRSTITVEFELGVDLEQAANDVRDRVSR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L D ++ IV D + +E + +++ Sbjct: 115 AMANLPPDVDPPIVTKADADAQPIVFLNVKSD--RRNLLELTRIAEELFKERLQTIPGVS 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP +L + + N + S Sbjct: 173 EVDIWGEKRYAMRIWLDPHKLAAYGLSPLDVRDALQRENVELPAGRIEGGSVELSIRTLS 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + E ++ E G R + Sbjct: 233 RLLTPEEF--------------------NNLILKEEGGRLVRLRDVGHAELGPENERTVL 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + + + ++ + S Sbjct: 273 KRDGIPMVGVVLRPQPGANYIAIADEFYRRLEQIKKELPADIELGIGFDVTEYIRDSIRE 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 + T + GLV++++F+ + + ++ I +++I L+ L G ++ + ++ GIV Sbjct: 333 VQQTIFLALGLVVLIIFLFLRDWRTTIIPVLVIPVSLIGAFFLMYLFGFSINVLTLLGIV 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IGL VD I+V E I + + + + +G + + + + + + L F G Sbjct: 393 LAIGLVVDDAIVVLENIYAKLEQGRPPIEAGIVGTREIFFAVIATTLALVAVFMPLLFLG 452 Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP--- 535 G R F +T+ +++IS F A+++ + +++ + S FF Sbjct: 453 GLTGRLFREFGMTLAGAVVISSFVALTLTPMLSTRLLQGHRGHSWFYYKTEPFFQRMAQG 512 Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 +++ R W +L + I + + + + A+ P + Sbjct: 513 YRRSLEAFLQRRWLAFPILLVAGGLIVWFMESLPAELVPMEDRSNISLFASGPEGATFEY 572 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + Q+ + + + + G S + + K + + + + Sbjct: 573 MDAYMDQLIRMIQEEVPEHEAIISVTSPGFGASSSVNSGFIRLILKDPDQRERTQQEIAD 632 Query: 656 IVGPKISRE 664 + ++ Sbjct: 633 YLSRRVRDF 641 Score = 86.7 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 71/188 (37%), Gaps = 9/188 (4%) Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 LE +KK++ + L + RE+ + + + + + + +++ W + Sbjct: 303 LEQIKKELPADIELGIGFDVTEYIRDSIREVQQTIFLALGLVVLIIFLFL---RDWRTTI 359 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 + + + + LFG N+ + ++ IG V+D +VV + + Sbjct: 360 IPVLVIPVSLIGAFFLMYLFGFSINVLTLLGIVLAIGLVVDDAIVVLENI---YAKLEQG 416 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASS 811 + E + T++A +P+ GG F + +A +V+++ Sbjct: 417 RPPIEAGIVGTREIFFAVIATTLALVAVFMPLLFLGGLTGRLFREFGMTLAGAVVISSFV 476 Query: 812 SIFIAAPI 819 ++ + + Sbjct: 477 ALTLTPML 484 Score = 65.1 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 70/193 (36%), Gaps = 7/193 (3%) Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695 I E V T + E R + + + + + + +F+ + Sbjct: 821 AAMDAIAERVLDETFSTALAGPSRDFAESSRSLLFVFLFALALVYLILAAQFESFRDPFV 880 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 + T+ L + L F N+ + ++ LIG + +++ + + + + Sbjct: 881 IMLTVPLALAGALLALWYFRQTLNIFSEIGMIMLIGLVTKNGILIVEFAK---QRKAAGL 937 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812 + I + + + TS++ + +LP+A+ G I + G+V+ + Sbjct: 938 PVLEAIKEGASARFRPILMTSISTILGILPIALALGAGSESRMPMGIAIIGGMVIGTLLT 997 Query: 813 IFIAAPILLFIYD 825 +++ I ++ Sbjct: 998 LYVIPAIYTYLTR 1010 >gi|270157327|ref|ZP_06185984.1| preprotein translocase subunit SecD [Legionella longbeachae D-4968] gi|289164278|ref|YP_003454416.1| protein-export membrane protein SecD [Legionella longbeachae NSW150] gi|269989352|gb|EEZ95606.1| preprotein translocase subunit SecD [Legionella longbeachae D-4968] gi|288857451|emb|CBJ11279.1| putative protein-export membrane protein SecD [Legionella longbeachae NSW150] Length = 618 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 169/525 (32%), Positives = 277/525 (52%), Gaps = 38/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + GLDLRGG H +LEVD + ++ + + L++ GI Sbjct: 103 NLAPSTPGWLDAIHAAPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNISQELRELGI 162 Query: 87 GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 +R I +K + L F D + +N + + P + + I Sbjct: 163 RYTGIRFIPDKGVELRFRDPQSMDNAFIGLKEKI----------PDLIFVKSKANNGIMA 212 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 +S ++ + + IEQ+M I+R R++++G+ E+ +Q+ G+ R+ + LPG QD +R +Q+ Sbjct: 213 SVSPTELNTMRQNTIEQTMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQI 272 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F+ V +N + + DG L++ +V +SG + A ++ Sbjct: 273 LGGTATLQFYLVDQDNDPQIAKQTGVVPVNDKLLMMDGYPILLKRQVVLSGDSITSAVSS 332 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGR 301 +D +T P V I G F +VTR+NIGK + + Sbjct: 333 YDQQTATPAVQIQLGGGGESLFTKVTRENIGKRMAIVYVETKNNIQTVNGVEKRITHREE 392 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + Q QI+G + A LA +LRAG+LP + +EER VG LG ++I Sbjct: 393 RVISAPVIQNALGNNFQITGLTDSKEASNLALLLRAGALPAAIYPIEERTVGPTLGKENI 452 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 +G ++ G+ LI++ M+ Y +GL+AD ++ LN++L ALLS++ ATLTLP IAGIV Sbjct: 453 RRGIISLEVGMGLILILMLSYYRFFGLIADVALLLNLVLLSALLSVIDATLTLPGIAGIV 512 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +G+AVD+N+L+ ERIREE R S ++ G+ RA+STI D+NIT LI ++LF G Sbjct: 513 LTVGMAVDANVLIYERIREELRHGLSPQAAIYAGYERAFSTILDANITTLIVAIILFAVG 572 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526 G VRGFA+T+ L +L SM T I+ RA++ + + +K + I Sbjct: 573 TGPVRGFAVTLSLGLLTSMLTGITYTRAIVNWYYGGRTVKKLSIG 617 Score = 124 bits (310), Expect = 7e-26, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 99/251 (39%), Gaps = 4/251 (1%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 G V ++ V + + + + +N L G + ++ Sbjct: 363 GKRMAIVYVETKNNIQTVNGVEKRITHREERVISAPVIQNALGNNFQITGLTDSKEASNL 422 Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696 + + + VGP + +E IR+GI+ + + +LI + +++ F L A Sbjct: 423 ALLLRAGALPAAIYPIEERTVGPTLGKENIRRGIISLEVGMGLILILMLSYYRF-FGLIA 481 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 L+L++ ++ L +A ++ +G +V+ V++Y+R+R+ ++ +S Sbjct: 482 DVALLLNLVLLSALLSVIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELR---HGLS 538 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 + I + ++ I + + G + FA+ ++ G++ + + I Sbjct: 539 PQAAIYAGYERAFSTILDANITTLIVAIILFAVGTGPVRGFAVTLSLGLLTSMLTGITYT 598 Query: 817 APILLFIYDWR 827 I+ + Y R Sbjct: 599 RAIVNWYYGGR 609 Score = 45.1 bits (104), Expect = 0.057, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 27/118 (22%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W ++ +I +GL+ A+PN ++ + + S P VD Sbjct: 4 KYPLWKNLMLIVIAVVGLVYAIPNLYTENPVVQISSETP-------------------VD 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D+ +++ + L K+ + S+ + + F+ + + D + L Sbjct: 45 YDE--------LKNQVENILNKDKLHYTSLVVQNEGVEVVFSSTDAQLLARDTIKNAL 94 >gi|283834213|ref|ZP_06353954.1| acriflavine resistance protein B [Citrobacter youngae ATCC 29220] gi|291070366|gb|EFE08475.1| acriflavine resistance protein B [Citrobacter youngae ATCC 29220] Length = 1049 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 68/690 (9%), Positives = 176/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------IAITAMY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117 +Q + + ++ + ITL+F + +V Sbjct: 50 PGADAETVQNTVTQVIEQNMNGIDHLMYMSSNGDSTGTATITLTFESGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDTISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDIINALKTQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIVAQTRLTNTE-------------EFGKILLKVNQDGSQVRLRDVAKIELGGESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T + + Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALDTANAIRAELKKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T A LV +V+++ + + L+ ++ + ++ T A+L++ G ++ ++ Sbjct: 336 SIHEVVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + I+ + + + +G Sbjct: 516 FNRMFDKSTHHYTDSVGGILRSTGRYLALYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + L+ + ++ + + E F V G +K Sbjct: 576 AQLPAGATQERTQKVLDEVTNYYLTKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWS 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 636 ERPGEENKVEAITGRAMGAFSQIKDAMVFA 665 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALDTANAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A+FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAIFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEQLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LIEATLDAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|168700102|ref|ZP_02732379.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein [Gemmata obscuriglobus UQM 2246] Length = 1088 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 82/673 (12%), Positives = 188/673 (27%), Gaps = 41/673 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ + G++ L + ++ +PS P + + Sbjct: 9 RPIFANVIAVITVLFGVVA-----LSRLPVEEYPSITPPT-------------VQVTAAY 50 Query: 63 DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117 + + + + E + S + +T++F ++ +V Sbjct: 51 PGANARVVADTVAAPIEQQVNGVENMLYMSSTSSSDGAYALTITFKIGTNLDDAQVQVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L D ++ + + I++ ++ S + D++ Sbjct: 111 RLAAAEPVLPEDVRRQGVKAEKQSSSIILVVSLTDPTGAHDSLFLSNYATLRLRDELSRV 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP +L TT +S N G Sbjct: 171 EGVGTVTVVGAGSYSMRVWLDPDKLAARQLTTQDVSAALARQNVQVAAGQIGQSPAEPGQ 230 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q V +S + I + + + Sbjct: 231 RFQMTVTTLGRLS-------------DPRQFEEIILKSGEAGQLVYLRDVARVELGAQNY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 V I + + ++ + Sbjct: 278 DMFAVQAGRESAFLIVYQLPGSNAIEVAKGVRAAMEKVKPSLPEGVEYAIPFDTTKFVDA 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 + S T LVLIV+ + + + LV ++ + +I A ++LLG ++ L ++ Sbjct: 338 AISSVYHTLIEAGVLVLIVIMVFLQNWRALLVPATTVPVTIIGAFAFMALLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ VD I++ E K + + S I + + V Sbjct: 398 FGLVLAIGIVVDDAIVIVENASHHIEKGLAPREATIRAMSEVTGPIISITLVLMAVFVPT 457 Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 F G G R FA+T+ + LIS A+++ A +R +++ F+ Sbjct: 458 AFLGGISGQMYRQFALTIAATALISALNALTLKPAQCAAWLRPHTGRNLFTRAFDFFYRP 517 Query: 535 PDCIAIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 + +R + W + + + + + G + ++A + D + Sbjct: 518 LEAAYSWSVRQLLKVWWAVLIVFLGLTAGTGWWYSKTPTGFLPQEDQGWVIVAVQLPDSA 577 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 + + + G +++V + S Sbjct: 578 SLSRTKDVTDKMNQILAATPGLDSWVVLGGMSLLEGTNAPNAATAFISFKDWSERKSPEL 637 Query: 653 NTEIVGPKISREL 665 + + ++ L Sbjct: 638 MQQALVGRLMGSL 650 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 93/235 (39%), Gaps = 9/235 (3%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A + V L V Q D+ E FL+ Q +++ + + +K+ Sbjct: 257 EAGQLVYLRDVARVELGAQNYDMFAVQAGRESAFLIVYQLPGSNAIEVAKGVRAAMEKVK 316 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 +P K I +I + + +LI I + + W L TT+ + Sbjct: 317 PSLPEGVEYAIPFDTTKFVDAAISSVYHTLIEAGVLVLIVIMVFLQNWRALLVPATTVPV 376 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLI 761 I F AL G NL + ++ IG V+D +V+ +N + ++ R+ Sbjct: 377 TIIGAFAFMALLGFSINLLTLFGLVLAIGIVVDDAIVIV----ENASHHIEKGLAPREAT 432 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813 ++++E G + ++ +P A G G + FA+ +A +++A +++ Sbjct: 433 IRAMSEVTGPIISITLVLMAVFVPTAFLGGISGQMYRQFALTIAATALISALNAL 487 Score = 65.5 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 60/159 (37%), Gaps = 9/159 (5%) Query: 672 GVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 ++ L+Y+ + W I + L I + G++ N+ V+ Sbjct: 880 MLVFGLAVFLVYLVLAAQYESWLLPFAVILVVPLGILGVVAGINARGMDNNVYTQIGVVL 939 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 +I + + +++ + R+ L S R+ ++ + TS+A + V+P+ + Sbjct: 940 IIALASKNAILIVEFARE---LRLAGRSVREAAVEASRLRFRPILMTSIAFILGVVPLVI 996 Query: 789 ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + S + G+V + ++F + I Sbjct: 997 AEGAGAAGRQSLGTAVFGGMVTSTVLAVFFVPAFYVAIQ 1035 >gi|325272155|ref|ZP_08138586.1| preprotein translocase subunit SecD [Pseudomonas sp. TJI-51] gi|324102718|gb|EGC00134.1| preprotein translocase subunit SecD [Pseudomonas sp. TJI-51] Length = 620 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 165/525 (31%), Positives = 273/525 (52%), Gaps = 41/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD D ++ +++Y E+++ L+KE + Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMSARMKVYEGEVKTLLRKERV 165 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q I L FAD +E + D + + Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFN--------DFDLTTTERNDLAVLRLA 217 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F + K F G VE + I+G + A A+FD Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAAVERGLIITGDQVTDAQASFDEHG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+I D G TR N+G+ +A + + + Sbjct: 335 RPQVNIRLDGHGGELMSRATRSNVGRSMAGIFIEQKPVTRYVKQTVDGVEKDVAVQSFVE 394 Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+I +Y +G++A ++ N++L LAL+SLLGATLTLP IAG Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRGFGVIATIALAGNMVLLLALMSLLGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE + SV ++ GF+RAY+ I D+N+T+L+ +LF Sbjct: 515 IVLTMGMAVDANVLIFSRIREELKAGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G G V+GFA+TM L I SMFTA+ + RAM+ + +K + Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVNLTCGGRDIKKLW 619 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 91/250 (36%), Gaps = 5/250 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V + + + + ++ L G + + + Sbjct: 372 VTRYVKQTVDGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I ++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-GFGVIATIALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ +K +S + I Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELKA---GMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820 + N + ++ + + + G + FA+ M+ GI + +++ + ++ Sbjct: 548 HEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVN 607 Query: 821 LFIYDWRAKN 830 L K Sbjct: 608 LTCGGRDIKK 617 Score = 48.9 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 17/121 (14%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W L ++ +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117 D + + L ++G G+ + ++++ + A + Sbjct: 51 LDRVSKALVDAKIAVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQT 110 Query: 118 F 118 Sbjct: 111 T 111 >gi|322834014|ref|YP_004214041.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella sp. Y9602] gi|321169215|gb|ADW74914.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella sp. Y9602] Length = 1050 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 73/687 (10%), Positives = 179/687 (26%), Gaps = 51/687 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + L Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPIAQYPTVAPPA-------------IQLTATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 +Q + + + S + +ITL+FA + +V Sbjct: 50 PGADAQTVQDTVTQVIEQNMNGIDNMMYMSSTSDSSGTVQITLTFASGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLATPLLPQEVQQQGISVEKSSSSFLMVAGFISNNGSMTQDDIADYVGSNVKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L T + + NN G Sbjct: 170 AGVGDVQLFGAQ-YAMRIWMDPNKLNNFQLTPVDVINAIKVQNNQIAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + I + I Sbjct: 229 QLNSSIVAQTRL-------------KSPDEFGKIILKVNQDGSQVRLKDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T + A L + Sbjct: 276 DVIARFNGQPASGLGIKLATGANALNTAASVKATLAKLEPFFPAGLEVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIKEVGKTLFEAIVLVFLVMFLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMVEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVLVAMILTPALCATMLKPVAKGEHHEKKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D + + V ++ + + + +G Sbjct: 516 NKKFEQSTHHYTDSVGNILRSTGRYLVIYLLIVVGMAFLFIRLPTSFLPEEDQGVFLTMA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + ++ + + F V G +K Sbjct: 576 QLPAGATQERTQKVLDEVTDYYLNKEKANVNSVFTVNGFGFAGRGQNTGIAFVSLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGI 670 + + + + Sbjct: 636 RSGAENKVPAIAGRAMGAFSTIKDALV 662 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 8/217 (3%) Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665 + Q G L + + L ++ + + +T +E+ Sbjct: 281 FNGQPASGLGIKLATGANALNTAASVKATLAKLEPFFPAGLEVVYPYDTTPFVKISIKEV 340 Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 + +++ + M +++ + L + + + T A FG N + Sbjct: 341 GKTLFEAIVLVFLVMFLFLQ---NFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFG 397 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 ++ IG V+D +VV + + + + ++ KS+ + G V +M +P Sbjct: 398 MVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455 Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 MA +GGS F+I + +V++ ++ + + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVLVAMILTPAL 492 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 61/166 (36%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGLSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALIA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 + G+ ++ +LT IG S + +++ + + M + +++ L Sbjct: 915 ATMRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIESTLEAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G++ A +I Sbjct: 973 PILMTSLAFILGVMPLVISSGAGSGSQNAVGTGVMGGMITATLLAI 1018 >gi|78062044|ref|YP_371952.1| hydrophobe/amphiphile efflux pump protein [Burkholderia sp. 383] gi|77969929|gb|ABB11308.1| Hydrophobe/amphiphile efflux pump, HAE1 family [Burkholderia sp. 383] Length = 1047 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 74/691 (10%), Positives = 184/691 (26%), Gaps = 50/691 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G L ++++P+ + + V Sbjct: 7 RRPIFAWVIAIVIMLAGYLAI-----RSLPINQYPNIAAPA-------------VSITVS 48 Query: 62 EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 + + L G+ S + I +F + +V Sbjct: 49 YPGASAQTVQDTVVQPIEQQLNGLDGLRYMSSESNADGSMTIVATFDQGTNPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 L L + ++ + + ++++ + + + + D I Sbjct: 109 NKLSLATPLLPQEVQQQGIRVVKYQINFMMVAALVSEDGKMSSGDLGNYLASNLQDPILR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 ++ L DP++L T ++ N G R Sbjct: 169 TKGVGDYLLMGSQYGM-RIWLDPAKLDSYSLTPLDVTNAIRSQNVQVSSGQLGGLPTRRG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 V KV + + + + + Sbjct: 228 VELSATVIGKVRL-------------RTADEFKQILLKVNADGSQVKLGDVATVSLGPEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T+E+ L P +V Sbjct: 275 YSISSMYNGKPSAGIALRLATGANLLETVESVKKLLKEQEPLLPPGVKIVVPYDTSPVVH 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T +L+ G T+ + Sbjct: 335 ASIHEVVKTLIEGIILVFLVMYLFLQNIRATLIPTLAVPVVLLGTFGVLAACGFTINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + + S + + + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMTEEGLSAREATSKSMGQIQGALVGIAMVLSAVFL 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSI 523 + FFGG R F+IT+ ++ +S+ A+ A+ + ++ Sbjct: 455 PMAFFGGSTGVIYRQFSITIVSAMALSVLVALVFTPALCATMLKPGDADHHVKKGFFGWF 514 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A + + V ++ + +G + + + Sbjct: 515 NRTFDRGTDRYEGAVAAILRKKGRYIVIYLLIVVGMGFLFTRIPTAFLPDEDQGTLFVQL 574 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L ++ + + E + V G +K Sbjct: 575 QMPGNASAERTEDALAKVRDYLLKDEADIVESVYTVNGFNFAGRGQNSALAFVGLKPWAA 634 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 +T+ ++ ++ ++ Sbjct: 635 RKGSDTTVFGLAQRAGAAFSKIKDGIVIPIV 665 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 7/227 (3%) Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 +L S N +RL V +++K++ + P I Sbjct: 269 SLGPENYSISSMYNGKPSAGIALRLATGANLLETVESVKKLLKEQEPLLPPGVKIVVPYD 328 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715 P + + + +I I + + +++ + L + + + T G A G Sbjct: 329 TSPVVHASIHE-VVKTLIEGIILVFLVMYLFLQNIRATLIPTLAVPVVLLGTFGVLAACG 387 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 N + ++ IG V+D +VV + + + +S R+ KS+ + G V Sbjct: 388 FTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLSAREATSKSMGQIQGALVGI 445 Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 +M LPMA +GGS F+I + + ++ ++ + Sbjct: 446 AMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVLVALVFTPAL 492 Score = 58.9 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 78/226 (34%), Gaps = 7/226 (3%) Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + + ++ G + + E+ + G A E +++ L Sbjct: 790 NSNGQMVPFSAVASGHWEYGSPKLERYNGIPAVELQGQPTAGHSSGEAMQEIEKIAAQLP 849 Query: 650 TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + G +L + +S + + + + ++ W + + L + Sbjct: 850 NGFGLAVTGLSYEEQLSGSQAPALYALSILIVFLCLAALYESWSVPFSVLMVVPLGVIGA 909 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + G+ ++ +LT +G S + +++ + ++ + +S ++ Sbjct: 910 VVATLARGLTNDVFFQVGLLTTVGLSAKNAILIVEFAKELYEKE--GMSLMQAAVQAARL 967 Query: 768 TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 L + TSMA + VLP+A+ G S + G++ A Sbjct: 968 RLRPIIMTSMAFVLGVLPLAISNGAGSGSQHSVGTGVVGGMMTATF 1013 >gi|332160782|ref|YP_004297359.1| multidrug efflux protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604668|emb|CBY26166.1| rnd efflux system, inner membrane transporter CmeB [Yersinia enterocolitica subsp. palearctica Y11] gi|325665012|gb|ADZ41656.1| multidrug efflux protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 1050 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIIMLAGSLAIM-----KLPVAQYPTIAPPA-------------ISISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMKQEDIADYVGSNVKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNYGLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQIMLKVNTDGSQVRLKDVAIVQLGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 NIIARFNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFG G R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D + + V + + L + +G V Sbjct: 516 NRMFEKSTHHYTDSVGNILRSTGRYLVIYLAIVIGMGVLFLRLPTSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + + + F V G +K Sbjct: 576 QMPAGATQERTQKVLDQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RPGEQNKVPAIVSRASAAFSQIKDGLVFA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + +++ + ++ K+ Sbjct: 258 SQVRLKDVAIVQLGAENYNIIARFNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 61.2 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMDLMQELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + VLP+ + G + + G++ A Sbjct: 958 G--LVESTLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|193078196|gb|ABO13149.2| RND family drug transporter [Acinetobacter baumannii ATCC 17978] Length = 1058 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 66/554 (11%), Positives = 154/554 (27%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGVDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNNLSDSDIKDYVNSSIKEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N+ G Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T E + LR + + Sbjct: 276 QFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPTGLADKLAYDTTPFIRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + ++ + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEDHTDPVTATSRSMQQISGALVGITSVLTAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A++ A+ I++ N + F Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 M + Sbjct: 516 RSFNNGFDRMSHSY 529 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 8/248 (3%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + L +++ +E ++ + P Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPT 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 R I + +I + I + I +++ + W + + + + T Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +FG N + A++ IG V+D +VV + + + +S+ + Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEDHTDPVTATSRSMQQ 437 Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823 G V TS+ +PMA +GG VI F+I + +V++ ++ + I Sbjct: 438 ISGALVGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496 Query: 824 YDWRAKNA 831 N Sbjct: 497 LKQHDPNK 504 Score = 63.6 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 17/232 (7%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-- 672 + +KI +P +Q + +S E G Sbjct: 821 NGVSSVNIQGTPAPGVSSGDAMKAMEKIIGKLPSMGLQGFDYEWTGLSLEERESGAQAPF 880 Query: 673 -VIISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALF-----GIEFNLTAV 723 +S + + + + ++ F++ + L + L + + + N+ Sbjct: 881 LYALSLLIVFLCLAALYESWSIPFSVLLVVPLGVIGAIVLTYLGMIIKGDPNLSNNIYFQ 940 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 A++ +IG S + +++ + ++ L D + L + T++A V Sbjct: 941 VAIIAVIGLSAKNAILIVEFAKE---LQEKGEDLLDATLHAAKMRLRPIIMTTLAFGFGV 997 Query: 784 LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 LP+A+ G S + G++ A IF ++I + Sbjct: 998 LPLALSTGAGAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSIFKYKPK 1049 >gi|60207557|gb|AAX14802.1| AdeJ [Acinetobacter baumannii] Length = 1058 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 66/554 (11%), Positives = 154/554 (27%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGVDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNNLSDSDIKDYVNSSIKEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N+ G Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T E + LR + + Sbjct: 276 QFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPTGLADKLAYDTTPFIRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + ++ + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEDHTDPVTATSRSMQQISGALVGITSVLTAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A++ A+ I++ N + F Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 M + Sbjct: 516 RSFNNGFDRMSHSY 529 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 8/248 (3%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + L +++ +E ++ + P Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPT 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 R I + +I + I + I +++ + W + + + + T Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +FG N + A++ IG V+D +VV + + + +S+ + Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEDHTDPVTATSRSMQQ 437 Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823 G V TS+ +PMA +GG VI F+I + +V++ ++ + I Sbjct: 438 ISGALVGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496 Query: 824 YDWRAKNA 831 N Sbjct: 497 LKQHDPNK 504 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 15/245 (6%) Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 E + + S + +E + K+ + + Sbjct: 809 EWTYGSPRLERYNGVSSVNIQGTPAPGVSSGDAMKAMEEIIGKLPSMGLQGFDYEWTGLS 868 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 + + + + I L + W + + L + + G+ Sbjct: 869 LEERESGAQAPFLYALSLLIVFLCLAALYESWSIPFSVLLVVPLGVIGAI-VLTYLGMII 927 Query: 719 --------NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 N+ A++ +IG S + +++ + ++ L D + L Sbjct: 928 KGDPNLSNNIYFQVAIIAVIGLSAKNAILIVEFAKE---LQEKGEDLLDATLHAAKMRLR 984 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + T++A VLP+A+ G S + G++ A IF ++I Sbjct: 985 PIIMTTLAFGFGVLPLALSTGAGAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSMF 1044 Query: 828 AKNAR 832 + Sbjct: 1045 KYKPK 1049 >gi|288933309|ref|YP_003437368.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Klebsiella variicola At-22] gi|288888038|gb|ADC56356.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Klebsiella variicola At-22] Length = 1036 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 73/682 (10%), Positives = 185/682 (27%), Gaps = 42/682 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L L Q + ++P+ P + Sbjct: 8 RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + + ITL+F + +V LQ Sbjct: 54 AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ D + + S + D I Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPATTQDDISDYVASNVKDPISRLNGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + D + L + T + + N+ G Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALKVQNDQIAAGQLGGTPALKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T A L+ + S Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ G+V Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + S+ + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + ++ + V ++ ++ + + +G + Sbjct: 520 QSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L+++ + + + E F V G +K Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDE 639 Query: 649 STIQNTEIVGPKISRELIRKGI 670 + +++ ++ + Sbjct: 640 NNVESIIKRATVAFSQIKDAMV 661 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + G + L V A+ V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680 + G + T K + ++ ++ I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T ++FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + +S ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 837 EAMALMEQLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 896 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L L G+ ++ +LT IG S + +++ + + M+ Sbjct: 897 FSVMLVVPLGVIGALLAATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 956 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 957 G--IIEATLEASRMRLRPILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATL 1014 Query: 811 SSI 813 +I Sbjct: 1015 LAI 1017 >gi|262038159|ref|ZP_06011556.1| protein-export membrane protein SecF [Leptotrichia goodfellowii F0264] gi|261747807|gb|EEY35249.1| protein-export membrane protein SecF [Leptotrichia goodfellowii F0264] Length = 319 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 76/286 (26%), Positives = 150/286 (52%), Gaps = 2/286 (0%) Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605 + + +G S + + SI T LN G+DFKGG L + ++ V+ + L+ + Sbjct: 9 KKYYLGFSAIMVLISIIFFLTIKLNLGVDFKGGDLLQLHYSQAVNKDTLNGALDGIINEV 68 Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665 +N + + + + V K++TE + + VGP I +EL Sbjct: 69 PQLKNRRLQYSEDNTIVLR--TEQLTDAQKNAVLKQLTEKTGKYELVKYDTVGPTIGKEL 126 Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 + ++I ++ ++IYI IRF++ +A+ + ++ D+ +G A E N +AA Sbjct: 127 TSNALTALLIGSLLIIIYITIRFEFVYAVAGVAAVLHDVIIAMGLIAFLKYEINTPFIAA 186 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 +LT++GYS+ND +VV+DR+R+N + F ++I++S+N+ RS++TS+ +S+ Sbjct: 187 ILTILGYSMNDTIVVFDRIRENDAKEGKTKDFAEIIEESVNQVYMRSLFTSLTTLLSITV 246 Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++GG + +F + G++ SSIF+A+P++ + +R K Sbjct: 247 LLIFGGDSLRTFNTALFIGMIFGTYSSIFVASPLVYLMRKYRKKRK 292 >gi|167855990|ref|ZP_02478736.1| protein-export membrane protein SecD [Haemophilus parasuis 29755] gi|167852872|gb|EDS24140.1| protein-export membrane protein SecD [Haemophilus parasuis 29755] Length = 603 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 159/523 (30%), Positives = 273/523 (52%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + GLDLRGG H ++EVD + + D LR+ +KE Sbjct: 93 NLAPATPEWLTSIGGEPMKRGLDLRGGVHFLMEVDMNTALAKQQDQLQDTLRNDFRKEKW 152 Query: 87 GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N T + F D+ + + N L +V + + Sbjct: 153 QYKAVKKAENFATDVEFNDTDTADKAVRYIRRT----NPNLEATYISPTVVRFAQSAQGL 208 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R +++ Sbjct: 209 -------ATSRDLAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + + G+ DG ++ K + G H+ + Sbjct: 262 LGATATLEFRLVNGNANLESAARGIVPADSEIKYSRDGMPTVLYRKTILGGEHI-INATS 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G T+ +GKP+A + Sbjct: 321 GKDERGLPNVSINLDAQGGDLMSNATKSAVGKPMATLYSEFKDSGRRDANGKVILEKHEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 381 VINVATINSRLGSSFQITGINSAAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A + GL L +LF +V Y +GL A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 441 QGMDASMLGLGLTILFCVVYYKVFGLFATAALLANLVLTIGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+++D+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++L+ G Sbjct: 501 AVGMSIDANVLIYERIKEEIRNGRSIQQAIHEGYNGAFTSIFDSNLTTILVAIILYSVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ L ++ISMFTAI+ R ++ + K++K + I Sbjct: 561 GPVKGFAVTLALGVMISMFTAITGTRMLVNLVYGGKRVKKLWI 603 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 98/247 (39%), Gaps = 4/247 (1%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + D +N + + N + L G + A V + Sbjct: 358 YSEFKDSGRRDANGKVILEKHEEVINVATINSRLGSSFQITGINSAAEAQNLAVLLRSGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +G + + + +G+ ++ +++ + +K F L A L+ ++ Sbjct: 418 LIAPIVIVEERTIGASLGADNVAQGMDASMLGLGLTILFCVVYYKV-FGLFATAALLANL 476 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 T+G +L G + +A ++ +G S++ V++Y+R+++ ++ S + I + Sbjct: 477 VLTIGLMSLIGATLTMPGIAGIVLAVGMSIDANVLIYERIKEEIR---NGRSIQQAIHEG 533 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 N +++ + + + G + FA+ +A G++++ ++I ++ +Y Sbjct: 534 YNGAFTSIFDSNLTTILVAIILYSVGTGPVKGFAVTLALGVMISMFTAITGTRMLVNLVY 593 Query: 825 DWRAKNA 831 + Sbjct: 594 GGKRVKK 600 >gi|169632593|ref|YP_001706329.1| putative RND protein (AdeB-like) [Acinetobacter baumannii SDF] gi|169794917|ref|YP_001712710.1| putative RND protein (AdeB-like) [Acinetobacter baumannii AYE] gi|184159308|ref|YP_001847647.1| cation/multidrug efflux pump [Acinetobacter baumannii ACICU] gi|213157678|ref|YP_002320476.1| multidrug efflux protein AdeJ [Acinetobacter baumannii AB0057] gi|215482463|ref|YP_002324649.1| AcrB protein [Acinetobacter baumannii AB307-0294] gi|239502315|ref|ZP_04661625.1| AcrB protein [Acinetobacter baumannii AB900] gi|260557282|ref|ZP_05829498.1| multidrug efflux protein AdeJ [Acinetobacter baumannii ATCC 19606] gi|301344910|ref|ZP_07225651.1| AcrB protein [Acinetobacter baumannii AB056] gi|301511081|ref|ZP_07236318.1| AcrB protein [Acinetobacter baumannii AB058] gi|301595156|ref|ZP_07240164.1| AcrB protein [Acinetobacter baumannii AB059] gi|332854204|ref|ZP_08435224.1| inner membrane multidrug efflux protein BpeB [Acinetobacter baumannii 6013150] gi|332866354|ref|ZP_08436959.1| inner membrane multidrug efflux protein BpeB [Acinetobacter baumannii 6013113] gi|332872569|ref|ZP_08440538.1| inner membrane multidrug efflux protein BpeB [Acinetobacter baumannii 6014059] gi|88758802|emb|CAJ77871.1| RND family drug transporter [Acinetobacter baumannii AYE] gi|169147844|emb|CAM85707.1| putative RND protein (AdeB-like) [Acinetobacter baumannii AYE] gi|169151385|emb|CAP00110.1| putative RND protein (AdeB-like) [Acinetobacter baumannii] gi|183210902|gb|ACC58300.1| Cation/multidrug efflux pump [Acinetobacter baumannii ACICU] gi|213056838|gb|ACJ41740.1| multidrug efflux protein AdeJ [Acinetobacter baumannii AB0057] gi|213985717|gb|ACJ56016.1| AcrB protein [Acinetobacter baumannii AB307-0294] gi|260409388|gb|EEX02690.1| multidrug efflux protein AdeJ [Acinetobacter baumannii ATCC 19606] gi|322509219|gb|ADX04673.1| AdeJ [Acinetobacter baumannii 1656-2] gi|323519248|gb|ADX93629.1| cation/multidrug efflux pump [Acinetobacter baumannii TCDC-AB0715] gi|332728129|gb|EGJ59517.1| inner membrane multidrug efflux protein BpeB [Acinetobacter baumannii 6013150] gi|332734702|gb|EGJ65806.1| inner membrane multidrug efflux protein BpeB [Acinetobacter baumannii 6013113] gi|332739255|gb|EGJ70113.1| inner membrane multidrug efflux protein BpeB [Acinetobacter baumannii 6014059] Length = 1058 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 66/554 (11%), Positives = 154/554 (27%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGVDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNNLSDSDIKDYVNSSIKEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N+ G Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T E + LR + + Sbjct: 276 QFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPTGLADKLAYDTTPFIRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + ++ + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEDHTDPVTATSRSMQQISGALVGITSVLTAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A++ A+ I++ N + F Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 M + Sbjct: 516 RSFNNGFDRMSHSY 529 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 8/248 (3%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + L +++ +E ++ + P Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPT 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 R I + +I + I + I +++ + W + + + + T Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +FG N + A++ IG V+D +VV + + + +S+ + Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEDHTDPVTATSRSMQQ 437 Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823 G V TS+ +PMA +GG VI F+I + +V++ ++ + I Sbjct: 438 ISGALVGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496 Query: 824 YDWRAKNA 831 N Sbjct: 497 LKQHDPNK 504 Score = 63.6 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 15/245 (6%) Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 E + + S + +E + K+ + + Sbjct: 809 EWTYGSPRLERYNGVSSVNIQGTPAPGVSSGDAMKAMEEIIGKLPSMGLQGFDYEWTGLS 868 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 + + + + I L + W + + L + + G+ Sbjct: 869 LEERESGAQAPFLYALSLLIVFLCLAALYESWSIPFSVLLVVPLGVIGAI-VLTYLGMII 927 Query: 719 --------NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 N+ A++ +IG S + +++ + ++ L D + L Sbjct: 928 KGDPNLSNNIYFQVAIIAVIGLSAKNAILIVEFAKE---LQEKGEDLLDATLHAAKMRLR 984 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + T++A VLP+A+ G S + G++ A IF ++I Sbjct: 985 PIIMTTLAFGFGVLPLALSTGAGAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSIF 1044 Query: 828 AKNAR 832 + Sbjct: 1045 KYKPK 1049 >gi|170723504|ref|YP_001751192.1| preprotein translocase subunit SecD [Pseudomonas putida W619] gi|169761507|gb|ACA74823.1| protein-export membrane protein SecD [Pseudomonas putida W619] Length = 620 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 165/525 (31%), Positives = 272/525 (51%), Gaps = 41/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD D ++ +++Y E+++ L+KE + Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMSARMKVYEGEVKTLLRKERV 165 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q I L FAD +E + D + + Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFS--------DFDLTTSERNETAVLRLA 217 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F + + F G VE + I+G + A A+FD Sbjct: 278 GKTANLEFRFGAEPGASRATTEVFEFREG--GRSAQVERGLIITGDQVTDAQASFDEHG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+I D G TR N+G+ +AV+ + + Sbjct: 335 RPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQTVNGVEKDVPVQSFLE 394 Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKKIISLATIQSPLGSQFRITGLDGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+I +Y +G++A ++ N++L LAL+SLLGATLTLP IAG Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE SV ++ GF+RAYS I D+N+T L+ +LF Sbjct: 515 IVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G G V+GFA+TM L I SMFTA+ + RA++ + +K + Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKLW 619 Score = 137 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 88/250 (35%), Gaps = 5/250 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V + + + + ++ L G + + Sbjct: 372 VTRYVKQTVNGVEKDVPVQSFLEEKKIISLATIQSPLGSQFRITGLDGQGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I ++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-AFGVLATIALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ + +S + I Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820 + N V ++ + + G + FA+ M+ GI + +++ + ++ Sbjct: 548 HEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVN 607 Query: 821 LFIYDWRAKN 830 L K Sbjct: 608 LTCGGRDIKK 617 Score = 45.5 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 35/385 (9%), Positives = 93/385 (24%), Gaps = 28/385 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W L ++ IG + + PN P + A +++ + D Sbjct: 4 KYPLWKYALIVLVLAIGFIYSAPNLYPDDPAVQISGASSALQVN-------------QSD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117 D + + L ++G + + ++++ + A + Sbjct: 51 LDRVSKALTEAGITVKGASLGEKGSALVRLSNQEDQLPAKDVVRKALGDDYVVALNLAQT 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + ++ + A+ M++ + + Sbjct: 111 T--------PQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMSARMKVYEGEVKTLLRK 162 Query: 178 ESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234 E R I++ + + R L+ N + + Sbjct: 163 ERVRYRSLPQQDGGIMLGFADDATREQARALIRKNFSDFDLTTSERNETAVLRLALTQAK 222 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 ++ +Y ++ + +N + I + G + E R Sbjct: 223 VAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 282 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 G A + + I + + + N+ Sbjct: 283 LEFRFGAEPGASRATTEVFEFREGGRSAQVERGLIITGDQVTDAQASFDEHGRPQVNIRL 342 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFM 379 D + G + V+F+ Sbjct: 343 DGHGGELMSRATRSNVGRSMAVIFI 367 >gi|206578338|ref|YP_002236321.1| acriflavine resistance protein F [Klebsiella pneumoniae 342] gi|290511640|ref|ZP_06551009.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Klebsiella sp. 1_1_55] gi|206567396|gb|ACI09172.1| acriflavine resistance protein F [Klebsiella pneumoniae 342] gi|289776633|gb|EFD84632.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Klebsiella sp. 1_1_55] Length = 1036 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 73/682 (10%), Positives = 185/682 (27%), Gaps = 42/682 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L L Q + ++P+ P + Sbjct: 8 RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + + ITL+F + +V LQ Sbjct: 54 AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ D + + S + D I Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPATTQDDISDYVASNVKDPISRLNGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + D + L + T + + N+ G Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALKVQNDQIAAGQLGGTPALKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T A L+ + S Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ G+V Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + S+ + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + ++ + V ++ ++ + + +G + Sbjct: 520 QSVNHYTNSVSGILRGTGRYLVIYLVIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L+++ + + + E F V G +K Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDE 639 Query: 649 STIQNTEIVGPKISRELIRKGI 670 + +++ ++ + Sbjct: 640 NNVESIIKRATVAFSQIKDAMV 661 Score = 75.9 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + G + L V A+ V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680 + G + T K + ++ ++ I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T ++FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + +S ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498 Score = 59.3 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 837 EAMALMEQLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 896 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L L G+ ++ +LT IG S + +++ + + M+ Sbjct: 897 FSVMLVVPLGVIGALLAATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 956 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 957 G--IIEATLEASRMRLRPILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATL 1014 Query: 811 SSI 813 +I Sbjct: 1015 LAI 1017 >gi|222824047|ref|YP_002575621.1| protein-export membrane protein SecD [Campylobacter lari RM2100] gi|222539269|gb|ACM64370.1| protein-export membrane protein SecD [Campylobacter lari RM2100] Length = 526 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 171/547 (31%), Positives = 292/547 (53%), Gaps = 37/547 (6%) Query: 1 MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58 MR+ + I++ ++ IGL+ ++P+F+ +I+LGLDL+GG H++L Sbjct: 1 MRSGKITYRSIIFFVVFLIGLIFSIPSFMQTQSGA---------KINLGLDLQGGLHMLL 51 Query: 59 EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 V+ ++ V ++ + L + KE I V ++ I S D + + Sbjct: 52 GVEVEEAVKSKVKSIASSLSYSVNKEDIIVDKIKVNDTSIEFSLLDENDVAKVDLLLKDI 111 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 +T + L+Q I AI Q++E IR R+DQ G++E Sbjct: 112 KGLA-------------ITHENLHYILSLTQEEIKLTHEQAILQAVETIRNRLDQFGLAE 158 Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPN--------NSKKGFM 227 + R G +IL++LPG + D +R R+L+ A + +V + Sbjct: 159 PNVARSGEDKILVELPGIKTTADEARARELIAKAAHLQLMEVDDVRMDQVNNLTPAQAAE 218 Query: 228 FGVRFLRD--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 +G D + +YLV+ + G L A F + PV++ + + GA++F + Sbjct: 219 YGDLIFEDAKNPQIKYLVKSIPILDGSMLTDAKVGFAQSNNLPVINFTLNSEGAKKFGDY 278 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 T +N+GK LA+VLD +V +AP IN+ I G QISG+FT+E A +A LR+G+L + Sbjct: 279 TGNNVGKRLAIVLDNKVYSAPRINERIGGGSGQISGSFTVEEAHDVAIALRSGALLAPVK 338 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 ++E+R+VG LG+DSI A+ +L++ FM++ YG G+ A+ ++ N+++ +A++ Sbjct: 339 MLEKRSVGPSLGADSIKMSMIALAGASILVIAFMVMYYGIAGIFANIALVANILVIIAIM 398 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 ++ GATLTLP +AG+VL +G+AVDSN+++NERIRE R+ S+ S++ G+ A S I D Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDSNVIINERIRELLREGASIRQSVENGYKHAMSAILD 458 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +NIT+LI ++VL+ +G GAV+GFA+T+ + IL+SM T+I M + + + Sbjct: 459 ANITSLITSIVLYAYGTGAVKGFAVTLSIGILVSMITSIVGTHGMFEMFMNRMEKSNNTR 518 Query: 526 NPLSRFF 532 Sbjct: 519 LWFGYRR 525 Score = 129 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 83/176 (47%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + + I+ ++ + ++I ++ ++ + + + A L+ +I + A+FG Sbjct: 344 SVGPSLGADSIKMSMIALAGASILVIAFMVMYYGI-AGIFANIALVANILVIIAIMAMFG 402 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A ++ +G +V+ V++ +R+R+ ++ S R ++ + + Sbjct: 403 ATLTLPGMAGLVLTVGMAVDSNVIINERIRELLRE---GASIRQSVENGYKHAMSAILDA 459 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ + I+ + + +G + FA+ ++ GI+V+ +SI + + K+ Sbjct: 460 NITSLITSIVLYAYGTGAVKGFAVTLSIGILVSMITSIVGTHGMFEMFMNRMEKSN 515 >gi|312143977|ref|YP_003995423.1| protein-export membrane protein SecF [Halanaerobium sp. 'sapolanicus'] gi|311904628|gb|ADQ15069.1| protein-export membrane protein SecF [Halanaerobium sp. 'sapolanicus'] Length = 286 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 154/286 (53%), Gaps = 4/286 (1%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 R IS + + L +GLN GIDF GG + V VR+ L+ + I Sbjct: 5 GKRKIWYIISSILIGIGLVFLLINGLNLGIDFLGGTIMEFSVEENVGTEDVRAVLQQIGI 64 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663 + + + + + + V++ I + + T++VGP I + Sbjct: 65 AEDATIQETDQDGLRGIM---IRGQALDSDQILAVEQAINDEFENVEMLRTDMVGPTIGQ 121 Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723 EL ++ +++++IA++ YI RF++ FA +I TL+ D+ T+G FA+ G E N V Sbjct: 122 ELRINALLAMLVASIAIVAYISFRFEFRFAAVSIITLMHDVLITIGIFAMLGREVNTPFV 181 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 AA+LT++GYS+ND +V++DR+R+NMKL + F + + ++ +TL RS+ TS+ +++ Sbjct: 182 AALLTIVGYSINDTIVIFDRIRENMKLM-HKVPFIEQANTAVVDTLPRSINTSITTLVAI 240 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 L + +GG+ + +F + + G+ SS+FIA+P+L+ + +K Sbjct: 241 LAIYFFGGASLQTFMLALFIGMFSGTYSSVFIASPLLVTWQNRISK 286 >gi|117926440|ref|YP_867057.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Magnetococcus sp. MC-1] gi|117610196|gb|ABK45651.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Magnetococcus sp. MC-1] Length = 1041 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 66/549 (12%), Positives = 148/549 (26%), Gaps = 41/549 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + ++++P+ P + + Sbjct: 9 RPVFAWVIAIVIMLAGVLSIL-----RLPVEQYPNIAPP-------------SVSINASY 50 Query: 63 DDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + L S IT++F + +V Sbjct: 51 PGASAETLENSVTQIIEQSLTGIDHMRYFSSSSDASGMASITITFEPEADPDTAQVQVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + T ++++ + +E + + D I Sbjct: 111 KLQAAMPLLPPEVQQQGVSVTKANNSFLMVAGFYSEDGSISQMELGDMLNSKVKDAIARV 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + N+ G R Sbjct: 171 NGVGSVTIFGEP-HAMRIWLDPRKLFSYNLTVMDVQQAIRAQNSDISAGQLGGLPARKGQ 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + Sbjct: 230 QLNATITAQSRL-------------QSVEDFQRILLRVNTDGSQVRLQDVARVELGAQSY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 S + + T A L I Sbjct: 277 GRVVRYKRLPAAGVAVSLASGANALDTAAAVKARIAELSQTLPAKVKIIYPYDTTPFVKL 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + L+ ++ + ++ T +LS G ++ + ++ Sbjct: 337 SIKEVIKTLVEAVFLVFVVMFLFLQNFRATLIPTIAVPVVLLGTFGVLSAFGFSINVLTM 396 Query: 418 AGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + S + + + + V Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMEHEGLSPREATRKSMQQITGALVGIALVLSAVFVP 456 Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FF G R F+IT+ ++ +S+ A+ + ++ ++ F Sbjct: 457 MAFFSGSAGAIYRQFSITIVSAMTLSVVVALVLSPSLCATFLKPAVKGEHSHGFFGWFNR 516 Query: 534 IPDCIAIQF 542 + +F Sbjct: 517 TFNAGRERF 525 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 82/197 (41%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + A + + + + V + +T +E+I+ + V + + M +++ Sbjct: 302 DTAAAVKARIAELSQTLPAKVKIIYPYDTTPFVKLSIKEVIKTLVEAVFLVFVVMFLFLQ 361 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 + L + + + T G + FG N+ + A++ IG V+D +VV + + Sbjct: 362 ---NFRATLIPTIAVPVVLLGTFGVLSAFGFSINVLTMFAMVLAIGLLVDDAIVVVENV- 417 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802 + +S R+ KS+ + G V ++ +PMA + GS + F+I + Sbjct: 418 -ERIMEHEGLSPREATRKSMQQITGALVGIALVLSAVFVPMAFFSGSAGAIYRQFSITIV 476 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ ++ + Sbjct: 477 SAMTLSVVVALVLSPSL 493 Score = 65.1 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 87/270 (32%), Gaps = 13/270 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + V + ++ S + N G N Sbjct: 775 PYRMMPADLDQWYVRNTQGKMVPFAAFSTSRWSYGAPKLERFNGSGSVNIQGSAAPGVST 834 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + +M++K I + E ++ +S + + + + Sbjct: 835 GTAMQEIEQMLQKLPAGIGLEWVGLSYEEQRSGAQAPILY------AVSILFIFLCLAAL 888 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W I ++ L I + +G+ ++ +LT +G + + +++ + + Sbjct: 889 YESWSVPFSVILSVPLGILGAVLAAKSYGLNNDVYFQVGLLTTMGLASKNAILIVEFAK- 947 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803 K Y + R + + TSMA + V P+AV G + + I + Sbjct: 948 --KQYQAGMDLRTATLMGAKQRFRPIIMTSMAFVLGVSPLAVANGAGSASQNAIGISVVG 1005 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNARI 833 G++ A +IF + I ++ Sbjct: 1006 GMLAATFIAIFFVPMFYMGIQRLARAPEQL 1035 >gi|227112200|ref|ZP_03825856.1| aminoglycoside/multidrug efflux system [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 1038 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 77/689 (11%), Positives = 189/689 (27%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L L+++P P + + Sbjct: 8 RPIFAWVLAILLSLCGMLAI-----KSLPLEQYPDLAPP-------------SVRITASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ++ L+F + +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLMYMSSDSSNTGQARVMLTFEAGTDPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + +I++ + + + + I Sbjct: 110 QLQSAIRKLPQDVQQQGVTVSKTGDTNILMVAFVSTDGSMDKQDIADYVATNIQEPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L TT+ + N+ G D+ Sbjct: 170 SGVGEVSAYGSQ-YAMRIWLDPAKLMDYALTTSDVVRAIESQNSQVSVGQVGGVPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + Sbjct: 229 VLNATINAQSLL-------------ETPQQFRDITLRVKQDGSAVTLANVAEVELGAERY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + + T + L + Sbjct: 276 DFLSRFNGQSASGLGVTLASGANELETDKRVRERIEELSQYFPHGLEAKIAFETSPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G +L ++ Sbjct: 336 SITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGFSLNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQVQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ S+++S+ A+++ A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSITIVTSMILSVLVAMTLTPALCATLLKPLAKGQHHGRKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + + + W + + I + + +G V Sbjct: 516 NRSFTRTSLKYERGVGKILISSGRWLLLYMGIIGIMAFLFFRLPTSFLPQEDRGVFTTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + ++ ++ + + F G+ R+ +K Sbjct: 576 QLPPGSTQQQTLQVVNKIEQYYLTQEKDNVTSVFSTIGSGPGGNGQNVARLFVRLKDWGE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 P S+ K R + + Sbjct: 636 RTTPESSSFAVIERATKAFRSIKEARVFA 664 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L+ V + D + + L + + + + +++++ P Sbjct: 260 VTLANVAEVELGAERYDFLSRFNGQSASGLGVTLASGANELETDKRVRERIEELSQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAFETSPFVKASITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FAVLYAFGFSLNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +GG+ F+I + ++++ ++ + + + Sbjct: 438 VQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSITIVTSMILSVLVAMTLTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 63.9 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 76/249 (30%), Gaps = 13/249 (5%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 D + + V S + N + Sbjct: 777 FRMLPDDVSKWYVRNNSGGMVPFSAFAQTAWETGSPRLERYNGYSSLEIVGEATPGVSTG 836 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + +V + T + + + + + S + + + + + Sbjct: 837 TAMNVMESLVAQLPEGFGLQWTGMSLQERLSGVQAP----ALYAI--SLLVVFLCLAALY 890 Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + W + + + + L G+E ++ +LT++G S + +++ + + Sbjct: 891 ESWTVPFSVMLVVPMGVLGALVATLARGLENDVYFQVGLLTVVGLSAKNAILIVEFANE- 949 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + ++ + L + TS+A VLPMA G + + + G Sbjct: 950 --MNQKGKDLVEATLEASRQRLRPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVIGG 1007 Query: 805 IVVAASSSI 813 ++ A +I Sbjct: 1008 MLAATFLAI 1016 >gi|218548097|ref|YP_002381888.1| aminoglycoside/multidrug efflux system [Escherichia fergusonii ATCC 35469] gi|218355638|emb|CAQ88250.1| aminoglycoside/multidrug efflux system [Escherichia fergusonii ATCC 35469] Length = 1037 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 66/681 (9%), Positives = 172/681 (25%), Gaps = 47/681 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +IC G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILICLTGTLAIF-----SLPVEQYPELSPP-------------NVRISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TL+F + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLTFEAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSALRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSIPQQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRAITLRVNQDGSEVKLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L V Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L ++ ++ Sbjct: 336 SIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLYAFDYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINP 527 + FFGG R F+IT+ ++++S+ A+ + A+ I++ K Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATILKPLHKGEQHGQKGFFGWF 515 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 F D + + +++ + ++ + + Sbjct: 516 NRVFNRNADRYERGVAKILHRSLRWLLIYLLLISGMVVLFMRLPSSFLPQEDRGMFTTSV 575 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + + N + + + + ++ + Sbjct: 576 QLPSGSTQQQTLKVVEQVEKYFFTHEKDNIMSVFATVGSGPGGNGQNVARMFVRLKDWDD 635 Query: 648 LSTIQNTEIVGPKISRELIRK 668 + + + +K Sbjct: 636 RDPKTGSAFAIIDRATQAFKK 656 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 83/235 (35%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A + + ++ + P Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 F N + A++ IG V+D +VV + + + +S R KS+ + Sbjct: 380 FAVLYAFDYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRAATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 31/269 (11%), Positives = 80/269 (29%), Gaps = 13/269 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 D + V S ++ + N + Sbjct: 776 PYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAARGVST 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + +V + T + + + + S + + + + Sbjct: 836 GTAMEIMENLVHQLPGGFGLEWTAMSYQERLSGAQAP----ALYAI--SLLVIFLCLAAL 889 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W + + L + L + G+E ++ +LT+IG + + +++ + Sbjct: 890 YESWSVPFSVMLVVPLGVVGALLATWMRGLENDVYFKVGLLTVIGLAAKNAILIVEFAND 949 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803 + + + + L + TS+A VLPMA+ G + + + Sbjct: 950 ---MNQKGHDLLEATLHACRQRLRPILMTSLAFIFGVLPMAISNGAGSASQHAVGTGVMG 1006 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G++ A +I+ + + R Sbjct: 1007 GMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|295097986|emb|CBK87076.1| Cation/multidrug efflux pump [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 593 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 69/592 (11%), Positives = 158/592 (26%), Gaps = 46/592 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G+L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGVLAI-----TSLPVEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLSFTAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSALRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L + T ++ N G D+ Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPNKLNSVQMTAKDVTDAIESQNAQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L V Sbjct: 276 DYLSRFNGNAASGLGVKLASGANEMATAQRVLERLDELSHFFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + A+ + +K + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATL-----LKPLHKGEHHGQKG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 F R S+ + + L G ++L Sbjct: 511 FFGWFNRMFNRNAARYEAGVGKVLHRSVRWMVVYVLLLGGMVFLFLRLPTSF 562 Score = 78.6 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A + + +++ P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGNAASGLGVKLASGANEMATAQRVLERLDELSHFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FAVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 >gi|121606772|ref|YP_984101.1| preprotein translocase subunit SecF [Polaromonas naphthalenivorans CJ2] gi|120595741|gb|ABM39180.1| protein translocase subunit secF [Polaromonas naphthalenivorans CJ2] Length = 317 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 163/302 (53%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS + ++ LF+ GL+ ++F GG + V + D Sbjct: 1 MEFFKIRRDIPFMRHALIFNLISFVTFALAVFFLFSRGLHLSVEFTGGTLMEVNYTQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R + L + D+ QNF ++ ++RL Q G S AQ + V + P T Sbjct: 61 VGKIRDTVAGLGLNDVQVQNFGTSRDVMIRLPAQKGVSTAQQS--DTVLAALKTASPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL + G+ + + +++Y+ RF+W +A+ AI + D+ LGF Sbjct: 119 LRRTEFVGPQVGEELAQDGLKALAMVVFGIMVYLAFRFEWKYAVAAIIANLHDVIIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AAVL ++GYSVN+ VV++DR+R+N + Y ++ ++I+ +I T+ Sbjct: 179 FAFFQWEFSLAVLAAVLAVLGYSVNESVVIFDRIRENFRRYRK-MNTEEIINNAITSTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + I VL M ++GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHGSTQIMVLSMLLFGGPTLFYFALALTIGILFGIYSSVFVAAAIAMWLGIKREDL 297 Query: 831 AR 832 + Sbjct: 298 IK 299 >gi|238795511|ref|ZP_04639026.1| Acriflavine resistance protein B [Yersinia mollaretii ATCC 43969] gi|238720630|gb|EEQ12431.1| Acriflavine resistance protein B [Yersinia mollaretii ATCC 43969] Length = 1050 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 69/689 (10%), Positives = 179/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIILMLAGILAIM-----KLPVAQYPTIAPPA-------------ISISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNVKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 TGVGDVQLFGSQ-YAMRIWMDPHKLNNYNLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQIMLKVNTDGSQVRLKDVAIVQLGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFG G R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D +A + V ++ + L + +G V Sbjct: 516 NRMFEKSTHHYTDSVANILRSTGRYLVIYLVIVIGMGVLFLRLPSSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L + + + F V G +K Sbjct: 576 QMPAGATQERTQKVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RPGEQNKVPAIVGRASAAFSQIKDGLVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + +++ + ++ K+ Sbjct: 258 SQVRLKDVAIVQLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 +L G+ ++ +LT IG S + +++ + + M + +++ L Sbjct: 915 ASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLEAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G+V A +I Sbjct: 973 PILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAI 1018 >gi|261363703|ref|ZP_05976586.1| protein-export membrane protein SecF [Neisseria mucosa ATCC 25996] gi|288568259|gb|EFC89819.1| protein-export membrane protein SecF [Neisseria mucosa ATCC 25996] Length = 311 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 95/298 (31%), Positives = 164/298 (55%), Gaps = 3/298 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS++ I ++ L T GLN+ ++F GG + V + VD Sbjct: 1 MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGVD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ R L++L++GD+ Q K+ ++RL + G + AQ + V + + P T Sbjct: 61 VNKTREKLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKEQPDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP++ EL+ G++ + ++IY+ +RF+W FA+ AI + DI LG Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769 FA F EF+LT +A +L ++GYSVN+ VVV+DR+R+N + + + +ID +I T+ Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPSMRGHTVPQVIDNAITATM 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 R++ T + V+ M V+GG+ + F++ + GIV SS+ +A+P+LL R Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSR 296 >gi|92114953|ref|YP_574881.1| protein translocase subunit secF [Chromohalobacter salexigens DSM 3043] gi|91798043|gb|ABE60182.1| protein translocase subunit secF [Chromohalobacter salexigens DSM 3043] Length = 302 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 158/292 (54%), Gaps = 6/292 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 + FM R +S+L ++ ++ L GLN G+DF GG + V + +L +R Sbjct: 1 MRQLDFMGKRRIAFIVSVLITVIAVGALAFKGLNLGLDFTGGTLVEVRYQQAPELDELRG 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 LES D+ Q F + LVRLQ V + V + + E Sbjct: 61 QLESAGFEDVQVQTFGATNDILVRLQ-----QTFDNEVGQQVVDILNTDANQVQLVRAEF 115 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG ++ +L + +G++++ +++Y+ RF++ FA GA+ L D+ LG FAL G+ Sbjct: 116 VGAQVGDQLRDQSGLGMLLALAVVMVYVAFRFQYKFAFGALVALGHDVVIVLGIFALLGL 175 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 +F+LT +AAVL +IGYS+ND ++VYDR+R+N++ + + +++IN+TL R++ TS Sbjct: 176 DFDLTVLAAVLAVIGYSLNDTIIVYDRIRENIRR-SQIDDMPQIFNEAINQTLARTMATS 234 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +L + GG +I +F+I + GIV SS++++A +LL + R Sbjct: 235 GTTLLVLLALFFLGGDMIHNFSIALILGIVAGTFSSVYVSAALLLVVKLERK 286 >gi|11071584|emb|CAC14595.1| putative RND protein [Stenotrophomonas maltophilia] Length = 1040 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 78/702 (11%), Positives = 185/702 (26%), Gaps = 42/702 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + +P+ P Sbjct: 8 RPIFAWVIAIIIMLAGGLALF-----KLPVSMYPNVAPPAVE---------ISATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 V + ++ L + ITL+F + +V LQ Sbjct: 54 AKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + + + A + + + +D++ Sbjct: 114 AMPLLPQEVQRQGINVAKSSSGFLNAIAFVSENGSMDANDIADYVGSNVVDRLSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L + +++ N G Sbjct: 174 NIQVFG-GKYAMRIWLDPNKLHTYGLSVPEVTAAIKAQNAQVAIGQLGGAPSVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I + Sbjct: 233 TINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESYDFVT 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T ++ + S Sbjct: 280 RYNGQPASGLAVTLATGANALDTAAGVDAALEDMKGFFPAGLKAEIPYDTTPFVRVSIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L++LG ++ + ++ +V Sbjct: 340 VVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAMLGFSVNMLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + V + F Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G R F+ T+ ++ +S+ AI + A+ +++ K + + Sbjct: 460 SGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLKKGEHHVAHRGLAGRFFNG 519 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 F R S + ++ GI + +GVL R + + Sbjct: 520 FNRGFDR-------TSESYQRGVRGIIHRPWRFMGIVAALFVLMGVLFVRLPSSFLPNED 572 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTIQNTE 655 L + E+ + + ++ V + Sbjct: 573 QGVLMALVQAPVGATQERTLESIAALENHFLQNEKDAVDSVFSVQGFSFAGMGQNAGMAF 632 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 + S G++ + A+A L I F + F AI Sbjct: 633 VKLKDWSERDADNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674 Score = 74.3 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 6/241 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + D + + L +++ ++ + + P Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVDAALEDMKGFFPAGLKA 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 R I+ + +I + + + + +++ + + L + + + T G Sbjct: 324 EIPYDTTPFVRVSIKGVVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A+ G N+ + A++ IG V+D +VV + + + +S + KS+ + G Sbjct: 384 AMLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V + +PMA GS F+ + + ++ +I + + + Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501 Query: 829 K 829 K Sbjct: 502 K 502 Score = 64.7 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 78/245 (31%), Gaps = 13/245 (5%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + V S + + N Sbjct: 781 FRMVPEDFDLWSVKNDKGEMVPFSAFATKHWDYGSPRLERYNGVSAMEIQGEPAPGVASG 840 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + ++ K+ T + + L+ +S + + + + + Sbjct: 841 DAMAEIEQLAKQLPAGFGIEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAAMY 894 Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + W + L I + G+E ++ A+LT +G + + +++ + ++N Sbjct: 895 ESWSVPTAVLLAAPLGILGAVLANTFKGLERDIYFQVAMLTTVGLTSKNAILIVEFAKEN 954 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + S + I ++ + L V TS+A + V+P+A+ G + + G Sbjct: 955 L---EKGASLIESIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVLGG 1011 Query: 805 IVVAA 809 ++V Sbjct: 1012 MIVGT 1016 >gi|56414370|ref|YP_151445.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56128627|gb|AAV78133.1| acriflavin resistance protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 1049 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 66/686 (9%), Positives = 174/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + ++P+ + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIF-----KLPVAQYPTIALPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + +P+ L + T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + I Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + P + S Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + + I+ + + + +G V Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|260548975|ref|ZP_05823197.1| multidrug efflux protein AdeJ [Acinetobacter sp. RUH2624] gi|260408143|gb|EEX01614.1| multidrug efflux protein AdeJ [Acinetobacter sp. RUH2624] Length = 1058 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 65/554 (11%), Positives = 153/554 (27%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGVDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNSLSDSDIKDYVNSSIKEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N+ G Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 VLNATVNAQSLL-------------QTPEQFRNIFLKNTASGAEVRLKDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + LR + + Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTAAAVEQRLSELRKNYPAGLQDKLAYDTTPFIRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + ++ + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEDHTDPVTATSRSMQQISGALVGITSVLTAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A++ A+ I++ N + F Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 M + Sbjct: 516 RSFNNGFDRMSHSY 529 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 8/248 (3%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + L +++ +E ++ + P Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAGGLAIKIATGANALDTAAAVEQRLSELRKNYPA 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 R I + +I + I + I +++ + W + + + + T Sbjct: 320 GLQDKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +FG N + A++ IG V+D +VV + + + +S+ + Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEDHTDPVTATSRSMQQ 437 Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823 G V TS+ +PMA +GG VI F+I + +V++ ++ + I Sbjct: 438 ISGALVGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496 Query: 824 YDWRAKNA 831 N Sbjct: 497 LKQHDPNK 504 Score = 63.6 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 15/223 (6%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 S + +E + K+ + + + + + + I Sbjct: 831 TPAPGVSSGDAMKAMEEIIGKLPSMGLQGFDYEWTGLSLEERESGAQAPFLYALSLLIVF 890 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF--------NLTAVAAVLTLIGY 732 L + W + + L + + G+ N+ A++ +IG Sbjct: 891 LCLAALYESWSIPFSVLLVVPLGVIGAI-VLTYLGMIIKGDPNLSNNIYFQVAIIAVIGL 949 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + ++ L D + L + T++A VLP+A+ Sbjct: 950 SAKNAILIVEFAKE---LQEKGEDLLDATLHAAKMRLRPIIMTTLAFGFGVLPLALSTGA 1006 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G S + G++ A IF ++I + Sbjct: 1007 GAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSIFKYKPK 1049 >gi|146387262|pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants Of The Putative Proton Relay Pathway Length = 1053 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 71/690 (10%), Positives = 179/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD+ I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDAAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 81/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+ +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDAAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|325496500|gb|EGC94359.1| aminoglycoside/multidrug efflux system [Escherichia fergusonii ECD227] Length = 1037 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 66/681 (9%), Positives = 172/681 (25%), Gaps = 47/681 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +IC G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILICLTGTLAIF-----SLPVEQYPELSPP-------------NVRISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TL+F + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLTFEAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSALRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSIPQQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRAITLRVNQDGSEVKLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L V Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L ++ ++ Sbjct: 336 SIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLYAFDYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINP 527 + FFGG R F+IT+ ++++S+ A+ + A+ I++ K Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATILKPLHKGEQHGQKGFFGWF 515 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 F D + + +++ + ++ + + Sbjct: 516 NRVFNRNADRYERGVAKILHRSLRWLLIYLLLIGGMVVLFMRLPSSFLPQEDRGMFTTSV 575 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + + N + + + + ++ + Sbjct: 576 QLPSGSTQQQTLKVVEQVEKYFFTHEKDNIMSVFATVGSGPGGNGQNVARMFVRLKDWDE 635 Query: 648 LSTIQNTEIVGPKISRELIRK 668 + + + +K Sbjct: 636 RDPKTGSVFAIIDRATQAFKK 656 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 83/235 (35%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A + + ++ + P Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 F N + A++ IG V+D +VV + + + +S R KS+ + Sbjct: 380 FAVLYAFDYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRAATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 31/269 (11%), Positives = 80/269 (29%), Gaps = 13/269 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 D + V S ++ + N + Sbjct: 776 PYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAARGVST 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + +V + T + + + + S + + + + Sbjct: 836 GTAMEIMENLVHQLPGGFGLEWTAMSYQERLSGAQAP----ALYAI--SLLVIFLCLAAL 889 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W + + L + L + G+E ++ +LT+IG + + +++ + Sbjct: 890 YESWSVPFSVMLVVPLGVVGALLATWMRGLENDVYFKVGLLTVIGLAAKNAILIVEFAND 949 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803 + + + + L + TS+A VLPMA+ G + + + Sbjct: 950 ---MNQKGHDLLEATLHACRQRLRPILMTSLAFIFGVLPMAISNGAGSASQHAVGTGVMG 1006 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G++ A +I+ + + R Sbjct: 1007 GMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|238918974|ref|YP_002932488.1| preprotein translocase subunit SecD [Edwardsiella ictaluri 93-146] gi|238868542|gb|ACR68253.1| protein-export membrane protein SecD, putative [Edwardsiella ictaluri 93-146] Length = 607 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 159/527 (30%), Positives = 284/527 (53%), Gaps = 43/527 (8%) Query: 30 SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG H +++VD D ++ + D LRS L+ +GI Sbjct: 93 NLAPATPKWLAMVGAEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLRDKGI 152 Query: 87 GVFSMR----QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142 ++R + ++F D+ ++ +D ++ + + + Sbjct: 153 PYSTIRKLPDPASGGVEINFRDAAARDAASDYLSPRHR-----------DLVFSNVGDTM 201 Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202 + V++ + + + +A++Q++ I+R R++Q+G++E +QR G+ RI+++LPG QD +R Sbjct: 202 LKAVMTDDRLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARA 261 Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGA 257 +++LG TA + F V N + G DG ++ +V ++G H+ + Sbjct: 262 KEILGATATLEFRLVNSNVDAQAAASGRVPGDSEVKYTRDGRPVVLYKRVILTGDHITDS 321 Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP----------- 306 T++ + ++P V+IS D G T+DNIGKP+A + + Sbjct: 322 TSS-QDEFNRPQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKKDASGKPILEK 380 Query: 307 -------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ +I+G A L+ +LRAG+L + IVEER +G LG Sbjct: 381 QEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQ 440 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIA 418 +I +G A + GL+ ++FM+V Y K+GL+A ++ N+++ + ++SLL ATLT+P IA Sbjct: 441 NIEQGLEACLWGLIASIIFMVVFYKKFGLIATTALLANLVMIVGIMSLLPGATLTMPGIA 500 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 GIVL + +AVD+N+L+NERI+EE R ++V ++ G+ A+S+I D+N+T LI V+L+ Sbjct: 501 GIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILY 560 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G+++GFAIT + + SMFTAI RA++ + K++ + I Sbjct: 561 AVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 607 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 95/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D ++ + + N ++ L G + + Sbjct: 361 FVEYKDSGKKDASGKPILEKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGA 420 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA +I++ + +K F L A T L+ ++ Sbjct: 421 LIAPIQIVEERTIGPTLGMQNIEQGLEACLWGLIASIIFMVVFYK-KFGLIATTALLANL 479 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ + + I + Sbjct: 480 VMIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHE 536 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++ I+ + + G I FAI A G+ + ++I I+ + Sbjct: 537 GYKGAFSSIIDANVTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLL 596 Query: 824 YDWRAKNA 831 Y + N Sbjct: 597 YGGKRINK 604 >gi|156932978|ref|YP_001436894.1| aminoglycoside/multidrug efflux system [Cronobacter sakazakii ATCC BAA-894] gi|156531232|gb|ABU76058.1| hypothetical protein ESA_00781 [Cronobacter sakazakii ATCC BAA-894] Length = 1038 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +IC G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILICLTGTLAIF-----SLPVEQYPELAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TL+F + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLNFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + + + Sbjct: 110 QLQSALRKLPQAVQTQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQEPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L TTA + N+ G D+ Sbjct: 170 NGVGDIDAYGSQ-YAMRIWLDPDKLTSFQLTTADVVAAIKSQNSQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRAITLRVNQDGSTVTLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L V Sbjct: 276 DYLSRYNGKAASGLGVKLASGANEMATAQLVLNRLDELSHYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SITDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYSFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSDEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ S+++S+ A+ + A+ + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLLKPLKKGEHHGSRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W + ++L L + +G V Sbjct: 516 NRTFERSALRYESAVGKILQRSLRWILLYALLLGGMVFLFLRLPTSFLPQEDRGMFITSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ ++ + + F G+ R+ + Sbjct: 576 QLPSGSTQQQTLKVVQQVERYFFEKEKANVASVFATVGSGPGGNGQNVARMFVRLNPWED 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + R + + Sbjct: 636 RDPDTGSADAIIERATQAFRHIKEARVFA 664 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 88/247 (35%), Gaps = 6/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + D + + L + +A +++ +++ Sbjct: 258 STVTLGDVATVEMGAEKYDYLSRYNGKAASGLGVKLASGANEMATAQLVLNRLDELSHYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + ++ + + + +++ + + L + + + Sbjct: 318 PHGLEYKVAYETTSFVKASITDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T FG N + A++ IG V+D +VV + + + +S R KS+ Sbjct: 378 GTFAVLYSFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSDEGLSPRAATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCAT 495 Query: 823 IYDWRAK 829 + K Sbjct: 496 LLKPLKK 502 Score = 68.2 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E L + +S + + + + ++ W + + L + L Sbjct: 853 FGLEWTAMSYQERLSGSQAPALYALSLLVVFLCLAALYESWTVPFSVMLVVPLGVIGALL 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 L G+E ++ +LT+IG S + +++ + + + + + + L Sbjct: 913 ATWLRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNSKGHELIAATLDACRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA G + + + G++ A ++F + I Sbjct: 970 RPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVMGGMISATLLAVFFVPLFFVLIRRR 1029 >gi|188533224|ref|YP_001907021.1| aminoglycoside/multidrug efflux system [Erwinia tasmaniensis Et1/99] gi|188028266|emb|CAO96124.1| (Acriflavine resistance protein B) same #2469 [Erwinia tasmaniensis Et1/99] Length = 1037 Score = 199 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 79/689 (11%), Positives = 185/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L + ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGGLAIV-----SLPIEQYPDLAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TL+F + +V Sbjct: 50 PGASAETLENTVTQVIEQNMTGIDNLMYMSSQSSNTGQATVTLTFEAGTNPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D + + + +I++ + S + D + Sbjct: 110 QLQTAMRKLPQDVQSQGVTVNKTGDTNILMVAFVSTDGSMDRQDISDYVASHLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q + DP +L TT ++ N+ G S Sbjct: 170 NGVGQVDAYGSQ-YAMRIWLDPDKLIDYALTTTEVVDAIKSQNSQIAVGQLGGLPSVPSQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + I Sbjct: 229 ALNATINSQSLL-------------QTPEQFRAITLRVNTDGSVVTLGQVARIELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T L + Sbjct: 276 DYLSRYNGMDASGLGIKLASGANELQTDTLVRARLDELSRFFPHGLKAEIAFETSPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + + T +L G ++ ++ Sbjct: 336 SIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPRDATRKSMGQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ ++++S+ A+ + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCSTLLKPLAQGSHHGRRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D + + W + L + ++ + G ++ +G V Sbjct: 516 NRMFNHNAERYKDGVGKMLAKGGRWLLVYLALIGVMALLFIRLPGSFLPLEDRGIFTTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L +E ++ ++ + + F G+ R+ +K Sbjct: 576 QLPPGSTLQQTMKVVEKVEHYYLTHEQNNVLSVFATVGAGPGGNGQNVARLFVRLKDWQD 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 ++ + R + +V Sbjct: 636 RHGSDNSSFAIIERATRAFRSINEAKVVA 664 Score = 79.3 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 86/235 (36%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + L + + ++ +++ P Sbjct: 260 VTLGQVARIELGAEKYDYLSRYNGMDASGLGIKLASGANELQTDTLVRARLDELSRFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + +++ + + L + + + T Sbjct: 320 GLKAEIAFETSPFVKASIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G FG N + A++ IG V+D +VV + + + +S RD KS+ + Sbjct: 380 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPRDATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ +PMA +GG+ F++ + +V++ ++ + + Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPAL 492 Score = 71.3 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 53/444 (11%), Positives = 129/444 (29%), Gaps = 18/444 (4%) Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464 L + S+ V N+ ++ + S RA Sbjct: 596 YYLTHEQNNVLSVFATVGAGPGGNGQNVARLFVRLKDWQDRHGSDNSSFAIIERATRAFR 655 Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 N ++A+ G G GF + + + + +S ++ + + + Sbjct: 656 SINEAKVVASSPAAITGLGNSAGFDMELQDNAGLGHRALMSARNTLLDMAQKNPSLTRVR 715 Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN--------YGIDFK 576 N L + I + +A + + + Y Sbjct: 716 HNGLDDSSQLRIDIDQRKAQALGISLDDINATLQTGWGSSYVNDFLDRGRVKKVYVQADA 775 Query: 577 GGIQLGVLANRPV--DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 L ++ + S + + E+ G+S Sbjct: 776 PFRMLPDDISKWYVRNDSGGMVPFTAFARSHWESGSPRLERYNGYSALEIVGESATGVSN 835 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYF 692 + + L + + G + + + +S + + + + ++ W Sbjct: 836 GAAMDVMEKLVAQLPVGISLQWTGASLQERMSGAQAPALYALSLLVVFLCLAALYESWSI 895 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 + + L + L L G+E ++ +LT+IG S + +++ + + + Sbjct: 896 PFSVMLVVPLGVLGALIATWLRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---INA 952 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809 ++ + L + TS+A VLPMA+ G S + + G++ A Sbjct: 953 RGQELVAATLEASRQRLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTGVLGGMISAT 1012 Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833 ++F + + +I Sbjct: 1013 VLAVFFVPLFFVMVRRRFPLKDKI 1036 >gi|283479341|emb|CAY75257.1| Protein-export membrane protein secD [Erwinia pyrifoliae DSM 12163] Length = 615 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 157/518 (30%), Positives = 277/518 (53%), Gaps = 37/518 (7%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + + + + LGLDLRGG H ++EVD D + D LRS L+++ I ++R Sbjct: 110 PAWLAMLSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYVNVR 169 Query: 93 QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + N + + F D + ++ + + ++ + ++ V+S Sbjct: 170 KTANYGMEIRFRDDKARDEAVSYLITRHR-----------DMVINGSGSNALTAVMSDER 218 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++LG TA Sbjct: 219 MREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATAT 278 Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V + G D ++ +V ++G H+ +T++ D Sbjct: 279 LEFRLVNTSVDATAAANGRVPGDSEVKNTRDKQPVVLYKRVILTGDHITDSTSSNDEYN- 337 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 +P V+IS D G T+D++GK +A + + Sbjct: 338 QPQVNISLDSAGGNIMSNFTKDSVGKAMATLFVEYKDSGKKDANGRAILEKHEEVINVAN 397 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q+ +I+G A L+ +LRAG+L + IVEER +G +G+ +I +G A Sbjct: 398 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEAC 457 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GL+ ++FM+V Y K+GLVA ++ N++L + ++SLL ATLT+P IAGIVL + +A Sbjct: 458 LWGLIASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA 517 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI ++L+ G G+++G Sbjct: 518 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 577 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 FAIT + + SMFTAI RA++ + K++ + I Sbjct: 578 FAITTAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI 615 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 96/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ N ++ L G + + + Sbjct: 369 FVEYKDSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 428 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ + +K F L A + L+ ++ Sbjct: 429 LIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK-KFGLVATSALLANL 487 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ S + I + Sbjct: 488 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 544 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 V ++ I V+ + G I FAI A G+ + ++I I+ + Sbjct: 545 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLM 604 Query: 824 YDWRAKNA 831 Y + N Sbjct: 605 YGGKRINK 612 >gi|260598855|ref|YP_003211426.1| aminoglycoside/multidrug efflux system [Cronobacter turicensis z3032] gi|260218032|emb|CBA32733.1| Probable aminoglycoside efflux pump [Cronobacter turicensis z3032] Length = 1038 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +IC G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILICLTGTLAIF-----SLPVEQYPELAPP-------------NVRITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TL+F + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLNFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + + + Sbjct: 110 QLQSALRKLPQAVQTQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQEPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L TTA + N+ G D+ Sbjct: 170 NGVGDIDAYGSQ-YAMRIWLDPDKLTSFQLTTADVVAAIKSQNSQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRAITLRVNQDGSTVTLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L V Sbjct: 276 DYLSRYNGKAASGLGVKLASGANEMATAQLVLNRLDELSHYFPHGLEYKVAYETTSFVEA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SITDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYSFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ S+++S+ A+ + A+ + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLLKPLKKGEHHGSRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W + ++L L + +G V Sbjct: 516 NRTFERSALRYESAVGKILQRSVRWILLYALLLGGMVFLFLRLPTSFLPQEDRGMFVTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ ++ + + F G+ R+ + Sbjct: 576 QLPSGSTQQQTLKVVQQVERYFFEKEKANVASVFATVGSGPGGNGQNVARMFVRLNPWED 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + R + + Sbjct: 636 RDPDTGSADAIIERATAAFRHIKEARVFA 664 Score = 75.9 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 87/247 (35%), Gaps = 6/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + D + + L + +A +++ +++ Sbjct: 258 STVTLGDVATVEMGAEKYDYLSRYNGKAASGLGVKLASGANEMATAQLVLNRLDELSHYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P I + ++ + + + +++ + + L + + + Sbjct: 318 PHGLEYKVAYETTSFVEASITDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T FG N + A++ IG V+D +VV + + + +S R KS+ Sbjct: 378 GTFAVLYSFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRAATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCAT 495 Query: 823 IYDWRAK 829 + K Sbjct: 496 LLKPLKK 502 Score = 69.3 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E L + +S + + + + ++ W + + L + L Sbjct: 853 FGLEWTAMSYQERLSGSQAPALYALSLLVVFLCLAALYESWTVPFSVMLVVPLGVIGALL 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 L G+E ++ +LT+IG S + +++ + + + + + + L Sbjct: 913 ATWLRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNSKGHELIAATLDACRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA G + + + G++ A +IF + I Sbjct: 970 RPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVMGGMISATLLAIFFVPLFFVLIRRR 1029 >gi|17227616|ref|NP_484164.1| preprotein translocase subunit SecF [Nostoc sp. PCC 7120] gi|17135098|dbj|BAB77644.1| protein-export membrane protein [Nostoc sp. PCC 7120] Length = 325 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 81/311 (26%), Positives = 150/311 (48%), Gaps = 22/311 (7%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-------------- 583 + + ++R IS +F + + + N I L Sbjct: 1 MKLSINKSRSLWWIISSVFILIGLISMVISWQNPDIRAPLRPSLDFIGGTRLQFERDCTK 60 Query: 584 --LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 ++P+D++VVR ++ +GD S Q + ++ + + + Sbjct: 61 PGNCDQPIDINVVREVAKAQGLGDSSIQIITDRETGAENGISIRTKTLEREQRTNLQNAL 120 Query: 642 ITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 +I + VGP + REL G++ +I+S + ++IY+ RF+ +AL AI L Sbjct: 121 SEKIGSFDEQKNQFDTVGPTLGRELFTSGMIALIVSFVGIIIYLNFRFQLDYALFAIIAL 180 Query: 701 ILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 D+ T G F++FG+ E + + A+LT+ G+SVND VV+YDR+R+ +KL Sbjct: 181 FHDVLITAGIFSIFGLVFGTEVDSLFIVALLTITGFSVNDTVVIYDRIRETLKLDPNR-P 239 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 D++D ++N+TLGRS+ T++ + + + ++GG + +FA+ + FG + A SSIFIA Sbjct: 240 IADIVDDAVNQTLGRSINTTLTTMLPLFAIYLFGGETLKNFALALIFGFLAGAYSSIFIA 299 Query: 817 APILLFIYDWR 827 + +L + Sbjct: 300 STLLTLWRERN 310 >gi|323944685|gb|EGB40752.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H120] Length = 618 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 71/627 (11%), Positives = 163/627 (25%), Gaps = 51/627 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDDLAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQN 610 +E ++ + + Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHRK 602 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 87/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ + + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDDLAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 >gi|226951594|ref|ZP_03822058.1| acridine efflux pump [Acinetobacter sp. ATCC 27244] gi|294651254|ref|ZP_06728581.1| RND superfamily drug:proton (H+) antiporter [Acinetobacter haemolyticus ATCC 19194] gi|226837653|gb|EEH70036.1| acridine efflux pump [Acinetobacter sp. ATCC 27244] gi|292822849|gb|EFF81725.1| RND superfamily drug:proton (H+) antiporter [Acinetobacter haemolyticus ATCC 19194] Length = 1058 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 64/552 (11%), Positives = 148/552 (26%), Gaps = 41/552 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LSKMPIAQYPTIAPPT-------------VTISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGLDGLRYISSNSSGNGQASIELNFEQGIDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + I Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVLAFYSPDNSMSDSDIKDYVNSSIKEPISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N+ G Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTNYQLTPSDVARALQAQNSQVAVGQLGGAPAVKDQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 VINATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDTY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T LR + + Sbjct: 276 AFNSMFNGKPAGGLAIKMATGSNALDTAAAVEERLTELRKNYPAGLEDKLAYDTTPFIKL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ +I + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAIPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF----CSLDMGFSRAYSTIFDSNITALIA 473 +VL IGL VD I+V E + + + S A I + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMTEEHTDPVTSTEKSMKQISGALIGITSVLSAVFVP 455 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 G R F+IT+ ++++S+ A++ A+ +++ N + F Sbjct: 456 MAFFSGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATLLKQHDPNKAPSNSIFARFF 515 Query: 534 IPDCIAIQFMRA 545 + + Sbjct: 516 RWFNHSFDRVSH 527 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 84/248 (33%), Gaps = 8/248 (3%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + L +++ +E ++ + P Sbjct: 260 VRLKDVARVELGSDTYAFNSMFNGKPAGGLAIKMATGSNALDTAAAVEERLTELRKNYPA 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + +I + I + I +++ + W + + + + T Sbjct: 320 GLEDKLAYDTTPFIKLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAIPVVVLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +FG N + A++ IG V+D +VV + + + +KS+ + Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMTEEHTDPVTSTEKSMKQ 437 Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823 G + TS+ + +PMA + G VI F+I + +V++ ++ + + Sbjct: 438 ISGALIGITSVLS-AVFVPMAFFSGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATL 496 Query: 824 YDWRAKNA 831 N Sbjct: 497 LKQHDPNK 504 Score = 56.2 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 15/223 (6%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 S + +E + K+ + + + + + + I Sbjct: 831 TPAPGTSSGDSMKAMEEIIAKLPSMGLQGFDYEWTGLSLEERESGAQAPFLYALSLLIVF 890 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF--------NLTAVAAVLTLIGY 732 L + W + + L I + FG+ N+ A++ +IG Sbjct: 891 LCLAALYESWSIPFSVLLVVPLGIIGAI-LLTYFGMVLKDDPNLSNNIYFQVAIIAVIGL 949 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 S + +++ + + L + + L + T++A VLP+A+ Sbjct: 950 SAKNAILIVEFAKD---LQEQGEELLEATLHAAKMRLRPIIMTTLAFGFGVLPLALSSGA 1006 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G S + G++ + IF ++I + Sbjct: 1007 GAGSQHSVGYGVLGGVLSSTLLGIFFIPVFFVWIRSIFKYKPK 1049 >gi|75907711|ref|YP_322007.1| preprotein translocase subunit SecF [Anabaena variabilis ATCC 29413] gi|75701436|gb|ABA21112.1| protein translocase subunit secF [Anabaena variabilis ATCC 29413] Length = 325 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 78/310 (25%), Positives = 148/310 (47%), Gaps = 22/310 (7%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-------------- 583 + + ++R +S + ++ + + N I L Sbjct: 1 MKLSINKSRSLWWILSSVITLVGLISMLISWQNPDIRAPLRPSLDFIGGTRLQFERDCTK 60 Query: 584 --LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 ++P+D++VVR ++ +GD S Q + ++ + + Sbjct: 61 PGNCDQPIDINVVREVAKAQGLGDSSIQIVTDRETGAENGISIRTKTLEREERTNLQNAL 120 Query: 642 ITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 +I + VGP + REL G++ +I+S ++IY+ RF+ +A+ AI L Sbjct: 121 SEKIGSFDEQKNQFDTVGPTLGRELFTSGMIALIVSFAGIVIYLNFRFQLDYAVFAIIAL 180 Query: 701 ILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 D+ T G F++FG+ E + + A+LT+ G+SVND VV+YDR+R+ +KL Sbjct: 181 FHDVLITAGIFSIFGLVFGTEVDSLFIVALLTITGFSVNDTVVIYDRIRETLKLEPNR-P 239 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 D++D ++N+TLGRS+ T++ + + + ++GG + +FA+ + FG + A SSIFIA Sbjct: 240 IADIVDDAVNQTLGRSINTTLTTMLPLFAIYLFGGETLKNFALALIFGFLAGAYSSIFIA 299 Query: 817 APILLFIYDW 826 + +L + Sbjct: 300 STLLTLWRER 309 >gi|57238795|ref|YP_179931.1| preprotein translocase subunit SecF [Ehrlichia ruminantium str. Welgevonden] gi|58578721|ref|YP_196933.1| preprotein translocase subunit SecF [Ehrlichia ruminantium str. Welgevonden] gi|57160874|emb|CAH57776.1| protein-export membrane protein SecF [Ehrlichia ruminantium str. Welgevonden] gi|58417347|emb|CAI26551.1| Protein-export membrane protein SECF [Ehrlichia ruminantium str. Welgevonden] Length = 289 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 101/283 (35%), Positives = 163/283 (57%), Gaps = 3/283 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I + F R R + + S L I S+ L+ G+ +G DF GGI + + N+ VD+ + Sbjct: 7 INVDFFRYRVYAISCSSLLVILSVLLVLFKGICFGTDFAGGIIIELRVNQ-VDIKDINLK 65 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L+ S Q+F N + ++++ ++ +T +E +K+ + EI+ T + V Sbjct: 66 LQERGFVGFSVQSF-NNNNKELMIRFKNEQNLGKTDSIEKIKEILKEILGDVTYLKIDYV 124 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ + I +GI ++ S + M +Y+WIRF+W FALG I L+ D+ TLG +L GIE Sbjct: 125 GPQVGYKQIFEGIYAILFSLLGMFLYLWIRFQWRFALGGIIALLHDVVLTLGLISLLGIE 184 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 FNL++ AA+LT+IGYSVND VV+YDR+R+ ++ ++I+ SIN TL R++ TS Sbjct: 185 FNLSSTAAILTVIGYSVNDSVVIYDRIRELLRKMLKEK-ITEIINISINATLSRTILTSG 243 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 I+ +P+ + + +I + FGI V SSIFIA L Sbjct: 244 TTMIAAIPLMLLCSGTVRDLSIIIFFGIAVGTYSSIFIATTSL 286 >gi|115524912|ref|YP_781823.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris BisA53] gi|115518859|gb|ABJ06843.1| protein translocase subunit secF [Rhodopseudomonas palustris BisA53] Length = 334 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 118/334 (35%), Positives = 197/334 (58%), Gaps = 17/334 (5%) Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552 + ++ A+ + ++ + ++ + D F R R I Sbjct: 1 MTNWILLGLGALVVALTVVSVLGLLPSLRIVP-----------DDTHFDFTRFRRISFPI 49 Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRSNLESLQIGDISFQNF 611 S L SI +I L FTHGLN+GIDFKGG L V + P D++ +R+ L L +GD+ Q F Sbjct: 50 SALLSIAAIVLFFTHGLNFGIDFKGGTLLEVQSKSGPADIASMRTTLSGLGLGDVQLQQF 109 Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 G + L+R+ QPG AQ ++ V++ + + E+VGP++S EL+ G++ Sbjct: 110 GGPADVLIRVAEQPGGDAAQQVAVQKVRQAL---GEAVEYRRVEVVGPRVSSELLAYGML 166 Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731 G++++ +LIY+W RF+W FALGA+ + DI T+GF ++ ++F+LT++AA+LT++G Sbjct: 167 GLMLAIFGILIYLWFRFEWQFALGAMIANVHDIVLTIGFMSVSQVDFDLTSIAALLTILG 226 Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791 YS+ND VV+YDR+R+ ++ Y + L+++SIN TL RS+ T + +++L + ++GG Sbjct: 227 YSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGG 285 Query: 792 SVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824 I SF M FG ++V +SIFIAAPIL+++ Sbjct: 286 HAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 319 >gi|77457506|ref|YP_347011.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas fluorescens Pf0-1] gi|77381509|gb|ABA73022.1| acriflavine resistance protein B [Pseudomonas fluorescens Pf0-1] Length = 1054 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 70/692 (10%), Positives = 185/692 (26%), Gaps = 44/692 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L L + ++++PS P + Sbjct: 8 RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AISVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + S I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLLVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNNFNLTPVDVKTAIAAQNVQVSSGQLGGLPAVQGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++G Sbjct: 233 TIIGKTRL-------------QTAEQFKEILLKVNKDGSQVRLKDVADVGLGGENYAISA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L+ + S Sbjct: 280 QFNGSPASGLAVKLANGANALDTAKALRKTIDDLKPFFPQGMEVVFPYDTTPVVTESIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+F+ + + ++ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAAGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG + F+IT+ ++ +S+ A+ A+ + + + Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKAVPHGEHGTPKKGFFGWFNRG 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + + + I+F L + +G + V Sbjct: 520 FDRSVKSYERGVGNILRHKAPYLLAYLIIFVGMIWLFLRIPSSFLPEEDQGVLFAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++ ++ + GE + + + G + A + + + Sbjct: 580 AGSSAQRTQVVVDEMREFLLRPTKDGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPW 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 N+ +++ ++ + Sbjct: 640 HERNADNSVFKLAARAQQHFFTFRDAMVFAFA 671 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 68/164 (41%), Gaps = 9/164 (5%) Query: 674 IISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 + + +++++ + W + + + L I L +L G+ ++ + +LT I Sbjct: 879 LFALSLLMVFLCLAALYESWSIPIAVVLVVPLGIIGALLATSLRGLSNDVYFLVGLLTTI 938 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789 G + + +++ + ++ L+ S RD ++ L + TS+A + V+P+A+ Sbjct: 939 GLAAKNAILIVEFAKE---LHEQGSSLRDAAIEACRMRLRPIIMTSLAFILGVVPLAIST 995 Query: 790 --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G + + G++ A +IF + + + Sbjct: 996 GAGSGSQHAIGTVVIGGMITATVLAIFWVPLFFVTVSSMGQRKN 1039 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + IS Q + L +++ + L + Sbjct: 258 SQVRLKDVADVGLGGENYAISAQFNGSPASGLAVKLANGANALDTAKALRKTIDDLKPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I+ + ++ + + + + +++ + + + T+ + + Sbjct: 318 PQGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A G N + ++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFGILAAAGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPAL 492 >gi|259909286|ref|YP_002649642.1| preprotein translocase subunit SecD [Erwinia pyrifoliae Ep1/96] gi|224964908|emb|CAX56431.1| Protein-export membrane protein [Erwinia pyrifoliae Ep1/96] Length = 604 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 157/518 (30%), Positives = 277/518 (53%), Gaps = 37/518 (7%) Query: 33 DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92 + + + + LGLDLRGG H ++EVD D + D LRS L+++ I ++R Sbjct: 99 PAWLAMLSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYVNVR 158 Query: 93 QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 + N + + F D + ++ + + ++ + ++ V+S Sbjct: 159 KTANYGMEIRFRDDKARDEAVSYLITRHR-----------DMVINGSGSNALTAVMSDER 207 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 + + +A++Q++ I+R R++Q+G++E +QR GS RI+++LPG QD +R +++LG TA Sbjct: 208 MREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATAT 267 Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 + F V + G D ++ +V ++G H+ +T++ D Sbjct: 268 LEFRLVNTSVDATAAANGRVPGDSEVKNTRDKQPVVLYKRVILTGDHITDSTSSNDEYN- 326 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308 +P V+IS D G T+D++GK +A + + Sbjct: 327 QPQVNISLDSAGGNIMSNFTKDSVGKAMATLFVEYKDSGKKDANGRAILEKHEEVINVAN 386 Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368 Q+ +I+G A L+ +LRAG+L + IVEER +G +G+ +I +G A Sbjct: 387 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEAC 446 Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427 + GL+ ++FM+V Y K+GLVA ++ N++L + ++SLL ATLT+P IAGIVL + +A Sbjct: 447 LWGLIASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA 506 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+NERI+EE R +SV ++ G+ A+S+I D+N+T LI ++L+ G G+++G Sbjct: 507 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 566 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 FAIT + + SMFTAI RA++ + K++ + I Sbjct: 567 FAITTAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI 604 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 96/248 (38%), Gaps = 5/248 (2%) Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 D +N ++ N ++ L G + + + Sbjct: 358 FVEYKDSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 417 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 ++ I +GP + + I +G+ + IA ++++ + +K F L A + L+ ++ Sbjct: 418 LIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK-KFGLVATSALLANL 476 Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 +G +L G + +A ++ + +V+ V++ +R+++ ++ S + I + Sbjct: 477 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 533 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 V ++ I V+ + G I FAI A G+ + ++I I+ + Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLM 593 Query: 824 YDWRAKNA 831 Y + N Sbjct: 594 YGGKRINK 601 >gi|327394744|dbj|BAK12166.1| probable aminoglycoside efflux pump AcrD [Pantoea ananatis AJ13355] Length = 1038 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 70/689 (10%), Positives = 186/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L + ++++P P ++ + Sbjct: 8 RPIFAWVLAILLCLCGTLAII-----SLPVEQYPDLAPP-------------NVRITATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +ITL+F + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGIDNLMYMSSNSSNTGQAQITLTFTAGTNPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L + + + +I++ + + + + + + Sbjct: 110 QLQSALRQLPQPVQSQGVTVNKTGDSNILMVAFVSTDGSMNKQDIADYVASNIQEPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L TT + N G ++ Sbjct: 170 DGVGEVDAYGTQ-YAMRIWLDPYKLTAYALTTDDVVNAIKSQNTQVAVGQVGGLPAVNNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 ALNATVNAQAML-------------QTPDQFKAITLKNNPDGSVVTLGDVATVALGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 276 DSLSRYNGQSASGLGIKLASGANEMNTDKLVRARLDELSHYFPHGLEAKIAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV V+++ + + L+ ++ + ++ T ++ G ++ ++ Sbjct: 336 SITDVVKTLLEAILLVFGVMYLFMQNFRATLIPTIAVPVVLLGTFCVIFAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGISPRAATRKSMGQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTVGAIYRQFSVTIVSAMILSVLVAMILTPALCATLLKPIAKGEHHGERGFFRWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + +A W + + I + L + +G I V Sbjct: 516 NHHFNRNADRYQRGVAHILRTGGRWLLLYVGIIGIMAFLFLHLPSSFLPQEDRGMILTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ + + ++ ++ + + F G+ R+ +K Sbjct: 576 QLPAGSSMNQTSAVVAKVEKYYLTKEKDNVLSVFSTIGSGPGGNGQNVARLFIRLKDWGD 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K + + ++ Sbjct: 636 RPGADRTSFAIIKRAGKAFKHINEATVIA 664 Score = 73.6 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + + +++ +++ P Sbjct: 260 VTLGDVATVALGAEKYDSLSRYNGQSASGLGIKLASGANEMNTDKLVRARLDELSHYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETTPFVKASITDVVKTLLEAILLVFGVMYLFMQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + IS R KS+ + Sbjct: 380 FCVIFAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGISPRAATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +G G++ F++ + ++++ ++ + + + Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTVGAIYRQFSVTIVSAMILSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 71.6 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 57/543 (10%), Positives = 142/543 (26%), Gaps = 42/543 (7%) Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV--- 381 I N +R + G++ I+ F+ + Sbjct: 500 IAKGEHHGERGFFRWFNHHFNRNADRYQRGVAHILRTGGRWLLLYVGIIGIMAFLFLHLP 559 Query: 382 --------LYGKWGLVADFSIFLNVILTLAL-----LSLLGATLTLPSIAGIVLGIGLAV 428 V + + + L + S+ + Sbjct: 560 SSFLPQEDRGMILTQVQLPAGSSMNQTSAVVAKVEKYYLTKEKDNVLSVFSTIGSGPGGN 619 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 N+ ++ + RA N +IA+ G G+ GF Sbjct: 620 GQNVARLFIRLKDWGDRPGADRTSFAIIKRAGKAFKHINEATVIASSPPAITGLGSSSGF 679 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548 + I + AM ++ + + I + Sbjct: 680 DL----EIQDHGGIGHDKLMAMRDMLLDKASKDKLLSRVRHNGLDDSPQLQIDIDERKAQ 735 Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV--------------DLSVV 594 +G+S+ ++ + +G ++ + + S Sbjct: 736 ALGVSLDTINDTLATAWGSSYVNDFLDRGRVKKVYVQADAPYRMLPGDVDKWYVRNSSGT 795 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 + + E+ G++ + + + L Sbjct: 796 MVPFSAFATSRWQTGSPRLERYNGYSSLEIVGEAAEGVSSGTAMNEMEKLVESLPLGVGF 855 Query: 655 EIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712 + G L + ++S + + + + ++ W + + L + L Sbjct: 856 QWTGASYQERLSGSQAPALYVVSLLVVFLCLAALYESWSIPFSVMLVVPLGVIGALIATW 915 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G+E ++ +LT++G S + +++ + + L + + + + L Sbjct: 916 TRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---LNSKGGELIESTLAASRQRLRPI 972 Query: 773 VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + TS+A VLPMA+ G S + G++ A +I + + Sbjct: 973 LMTSLAFIFGVLPMAISSGAGSGSQHSVGTGVMGGMISATILAILFVPLFFVLVRRRFPL 1032 Query: 830 NAR 832 + Sbjct: 1033 KEK 1035 >gi|295096742|emb|CBK85832.1| The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 1048 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 66/685 (9%), Positives = 174/685 (25%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + + Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + S Sbjct: 280 KFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFFPSGLKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L++ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAIFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGGHGEHKGFFGWFNRMF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + + I+ + + + +G Sbjct: 520 DKSTHHYTDSVGNILRSTGRYLLLYIIIVVGMAFLFVRLPSSFLPDEDQGVFLSMAQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + ++ + + E F V G +K Sbjct: 580 GATQERTQKVLDEMTDYFLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 ENKVEAITGRAMGTFSQIKDAMVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + DI + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A+FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAIFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMNLMEELASKLPAGVGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|325268060|ref|ZP_08134706.1| protein-export membrane protein SecF [Kingella denitrificans ATCC 33394] gi|324980445|gb|EGC16111.1| protein-export membrane protein SecF [Kingella denitrificans ATCC 33394] Length = 313 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 86/298 (28%), Positives = 150/298 (50%), Gaps = 1/298 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS+ I ++ L T GLN ++F GG + V Sbjct: 1 MELFKFKRDIPFMSYGKLTTFISLATFILAVFFLLTRGLNLSVEFTGGTLMEVEYASQQG 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + + + + Q N + ++ V+ ++ V + + + P + Sbjct: 61 ADLNQVRHQLDTLKMGEVQVQALGTNKHIMIRLPNKPDVSSAQLSNQVMETLKKQSPDVS 120 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP + EL+ G+ + + + ++ Y+ +RF+W FA+ AI + DI LG Sbjct: 121 LRQVEFIGPAVGDELVSHGLKALGMVIVGIIAYLSMRFEWRFAVSAIIANLHDIVIILGC 180 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769 FA F EF+LT +A VL ++GYSVN+ VVV+DR+R+N++ + S + ++ID +I T+ Sbjct: 181 FAFFRWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENLRKGSMRSKTVPEVIDNAITATM 240 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 GR++ T + V+ M V+GG+ + FA + GIV SS+ +A+P+LL R Sbjct: 241 GRTIITHGSTEAMVISMLVFGGAALHGFATALTIGIVFGIYSSVLVASPLLLMFGLTR 298 >gi|149914181|ref|ZP_01902712.1| Cation/multidrug efflux pump, RND family protein [Roseobacter sp. AzwK-3b] gi|149811700|gb|EDM71533.1| Cation/multidrug efflux pump, RND family protein [Roseobacter sp. AzwK-3b] Length = 1039 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 70/625 (11%), Positives = 172/625 (27%), Gaps = 45/625 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I IG+L + ++P P + + Sbjct: 8 RPVFAWVISILIMGIGILAI-----RTLPVAQYPQIAPP-------------SVTITATY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117 V + ++ + L S +++TL+F + +V Sbjct: 50 PGASANTVANTVTQVIEQQMTGLDGLRYFSSSSTADGLSEVTLTFETGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L ++ L +++ ++ + ++ +D++ Sbjct: 110 KLSQATPLLPETVQRQGLTVEKSSAGFLMVVALISTDGTLEQVDLADYMVSNLVDELSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T A + N FG R + Sbjct: 170 QGVGSVNVFGGQ-YAMRIWLDPAKLAAFELTPADVVAAVSAQNAQISAGAFGARPTLEGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + E + Sbjct: 229 QLNATITAQSLL-------------RTPEDFRQIVLRAETDGGLVLLDDVARVEIGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 A + + T ++ Sbjct: 276 ATIARFNADPAAGMAITLAPGANALDTASAIKERMEDFSRFFPTGVDYVIPYDTTPFVEI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T GLV +V+F+ + + L+ ++ + ++ T +L+ G T+ ++ Sbjct: 336 SIKEVVKTLFEAIGLVFLVMFLFLQNLRATLIPTLAVPVVLLGTFGVLAAAGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475 +VL IGL VD I+V E + + + + I + + + + Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERIMEEEGLPPREATHKSMGQITGALIGIAMVLSAVFVP 455 Query: 476 VLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK----KMKSIDINPLS 529 + FF G + FAIT+ ++ +S+ A+++ A+ +++ K K Sbjct: 456 MAFFPGSTGVIYQQFAITIVSAMALSVVVALTLTPALCASLLKPKGHAAKRGPFGWFNSG 515 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 L R I + ++ + G + + + Sbjct: 516 FSGLTNGYTGTVRWSVRRPFRVGIIYLVLAAVMVGLFMRTPTGFLPEEDQGILFTLIQTP 575 Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614 + LE ++ + + + + Sbjct: 576 TGATAERTLEVVKQVEDYYLTQEDQ 600 Score = 70.9 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 80/238 (33%), Gaps = 12/238 (5%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + + +++ ++ + + P Sbjct: 260 VLLDDVARVEIGAENYATIARFNADPAAGMAITLAPGANALDTASAIKERMEDFSRFFPT 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 I++ + + + + + +++ + L + + + T Sbjct: 320 GVDYVIPYDTTPFVEISIKEVVKTLFEAIGLVFLVMFLFLQNLRATLIPTLAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKS 764 G A G N + A++ IG V+D +VV +R+ + + R+ KS Sbjct: 380 FGVLAAAGFTINTLTMLAMVLAIGLLVDDAIVVVENVERIMEE-----EGLPPREATHKS 434 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + + G + +M +PMA + GS FAI + + ++ ++ + + Sbjct: 435 MGQITGALIGIAMVLSAVFVPMAFFPGSTGVIYQQFAITIVSAMALSVVVALTLTPAL 492 Score = 58.5 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 81/263 (30%), Gaps = 14/263 (5%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 ++ + + V S + N A Sbjct: 778 PTDIDKWRVRNASGQLVPFSNFAEGRWDYGAQGLYRYNSVPSIQIQGSPATGVTTGEAMA 837 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691 + +V + T T + E L+ +S A+ + + ++ W Sbjct: 838 EMERLVSELGTGYSLAWTGLSLEERQSGNQAPLLY------ALSLAAVFLSLAALYESWS 891 Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 + + + I L L G E + +LT+IG + + +++ + R Y Sbjct: 892 IPFAVMLAMPIGILGALTGAWLGGFENGVFFQVGLLTVIGLTGKNAILIVEFARD---RY 948 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811 D + ++ + + TSMA + VLP+ + G+ G + G++ S Sbjct: 949 EAGERVIDAVAEAARQRFRPIIMTSMAFSLGVLPLVLSSGAGSGGRN-AIGSGVLAGTLS 1007 Query: 812 SI---FIAAPILLFIYDWRAKNA 831 + + P+ I + Sbjct: 1008 ATILGVVFVPLFFMIVTRLFRRG 1030 >gi|56963331|ref|YP_175062.1| preprotein translocase subunit SecF [Bacillus clausii KSM-K16] gi|56909574|dbj|BAD64101.1| preprotein translocase subunit F [Bacillus clausii KSM-K16] Length = 311 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 78/301 (25%), Positives = 146/301 (48%), Gaps = 8/301 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 P+ + + R S L + I LL T GLN G+DF+ G + + A++ + Sbjct: 1 MSFNPEKWNVDLTKHRKRFFIGSGLSIVLGIVLLLTFGLNLGVDFESGSNVEIQADQTLM 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + + ++ GE++ ++ S + ++ + Sbjct: 61 QEQLLDDFAAINESYTPNITLGGEQSQSATARFTVELSKDEITAIQTYFQ-----DKYGH 115 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 N V P + +EL R I+ V+I+++ ++IYI RF + + + A+ L+ D + Sbjct: 116 SPNVSTVSPLVGQELARNAILSVLIASLGIVIYIGFRFHFLYGVSAVIGLLHDAFIIIAL 175 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR---DLIDKSINE 767 F+LF +E N+ +AAVLT++GYS+ND +V +DRMR+N+ SF +++KS+ + Sbjct: 176 FSLFQVEINVPFIAAVLTVVGYSINDTIVTFDRMRENINKEKEIKSFEHLAQIVNKSLLQ 235 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 L RS+ T + + + + ++GG I SF++ + G++ SS+F+ A I L R Sbjct: 236 VLTRSINTVLTVLFAAVALLIFGGEAIRSFSLALVIGLIAGTYSSMFLCAQIWLVWEWKR 295 Query: 828 A 828 Sbjct: 296 Q 296 >gi|51597081|ref|YP_071272.1| aminoglycoside/multidrug efflux system [Yersinia pseudotuberculosis IP 32953] gi|153950200|ref|YP_001400248.1| aminoglycoside/multidrug efflux system [Yersinia pseudotuberculosis IP 31758] gi|170023624|ref|YP_001720129.1| aminoglycoside/multidrug efflux system [Yersinia pseudotuberculosis YPIII] gi|186896171|ref|YP_001873283.1| aminoglycoside/multidrug efflux system [Yersinia pseudotuberculosis PB1/+] gi|51590363|emb|CAH22003.1| HAE1 family (RND superfamily) multidrug efflux protein [Yersinia pseudotuberculosis IP 32953] gi|152961695|gb|ABS49156.1| acriflavine resistance protein D [Yersinia pseudotuberculosis IP 31758] gi|169750158|gb|ACA67676.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia pseudotuberculosis YPIII] gi|186699197|gb|ACC89826.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia pseudotuberculosis PB1/+] Length = 1043 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 69/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S +TL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASVTLTFQAGTNPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L D ++ + + + ++++ + S + D + Sbjct: 110 QLQSAIKRLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDISDYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT+ + N G D+ Sbjct: 170 EGVGSVDAFGSQ-YAMRIWLDPNKLTNYQLTTSDIVSAIQSQNTQVAVGQLGGTPAVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEEFREITLRVNQDGSLVTLGDVAKIELGSEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + A L + Sbjct: 276 DYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPHGLEAKIAYETTPFVQA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGTFAVLSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + + + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALIGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + AM + +K I Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATL-----LKPIAPGHHHAKRG 510 Query: 534 IPDCIAIQFMRARFWG 549 F R Sbjct: 511 FFGWFNRMFDRNSHRY 526 Score = 83.6 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + + ++ ++ P Sbjct: 260 VTLGDVAKIELGSEKYDYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETTPFVQASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + + R+ KS+ + Sbjct: 380 FAVLSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + ++ +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALIGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ + L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNNRGKDLVEATLEASRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029 >gi|21243244|ref|NP_642826.1| preprotein translocase subunit SecD [Xanthomonas axonopodis pv. citri str. 306] gi|21108777|gb|AAM37362.1| protein-export membrane protein [Xanthomonas axonopodis pv. citri str. 306] Length = 614 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 143/520 (27%), Positives = 251/520 (48%), Gaps = 39/520 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDL GG H ++VD+ + L +++++R+ L+ I Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I ++ + + + + L + + I++ Sbjct: 163 PYRSVERRADNSIQVNLGEGASADAARVALAK------------AQPTLTYDVSGQNIAV 210 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + Q+ S AIEQ++ +R R++ +G+SE TIQR G RI+++LPG QD + ++L Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + F V+ N+ G L+ + ++G + AT Sbjct: 271 IGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVDATV 330 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302 D V + G R F T + + + Sbjct: 331 GNDENGMPAVNVTLNNAAGQRMFDYTSANVGKLMSVVFIERVPTVTVVDGKEIRSVRVKE 390 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 P A GK + + A LA +L++GSL ++ VEE +G LG++++ Sbjct: 391 EALPSTRIAGVFGKNFRTTGLEKKEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A+V + ++F + Y +G + ++ N+++ +A++SL GAT+TLP AG+ L Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG Sbjct: 511 SVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G ++GFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 97/267 (36%), Gaps = 4/267 (1%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + G + V+ V V E + + ++ Sbjct: 350 QRMFDYTSANVGKLMSVVFIERVPTVTVVDGKEIRSVRVKEEALPSTRIAGVFGKNFRTT 409 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 + K + ++GP + E + +G+ V+ S + L++ I Sbjct: 410 GLEKKEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F L+ ++ + +LFG L A + +G SV+ V++ +R+R+ Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++L + + I + G + ++ I + + +G + FA+ M GI Sbjct: 529 ELRL---GVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585 Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833 + ++I ++ + + IY R K + Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612 Score = 43.9 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 34/123 (27%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W L ++ + L ALPN + + Sbjct: 2 LEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQ-------------------------- 35 Query: 61 DEDDFVNGFLQMYSDELRSFLKKE----GIGVFSMRQIQNKITLSFADSRFKENIADKVT 116 D LRS + E GI ++ + + + + + + D + Sbjct: 36 ----ITASRGAQLDDALRSRIDGELKSAGITPKAITKEGDSLMVRLPSLQAQTRANDVLR 91 Query: 117 LFL 119 L Sbjct: 92 QQL 94 >gi|85712077|ref|ZP_01043130.1| Probable acriflavine resistance protein B, RND family efflux system component [Idiomarina baltica OS145] gi|85694067|gb|EAQ32012.1| Probable acriflavine resistance protein B, RND family efflux system component [Idiomarina baltica OS145] Length = 1033 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 63/546 (11%), Positives = 156/546 (28%), Gaps = 32/546 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G + + Q + ++P+ P + Sbjct: 8 RPIFAWVIAILVMLAGTISLI-----QLPIAQYPTIAPPAVE---------IQVNYPGAN 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122 + V+ + ++ + + ++L+FA + +V L Sbjct: 54 AETVSNTVTKVIEQNMTGVDNLLYFSSQSNAGSATVSLTFASGTDPDIAQVQVQNKLSQA 113 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 +L + ++ + + +++ + + S + D + +E Sbjct: 114 TPQLPQEVQQQGITVSKSSSSFLMVLAMVAEDDRYEQTDLSDYLASNVQDAVSRTEGVGN 173 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + P L T A++ N G + Sbjct: 174 VQIFGAPYAMRIWVK-PDALVNYNMTIAELQSAIRAQNAQVAAGQLGGAPAVEGQRLNAT 232 Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302 + + +S + + + + + Sbjct: 233 IIAQTRMS-------------EPDQFENILLKVLPDGSQVRLKDVARVELGAENYAIQAN 279 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + T E A L + S S Sbjct: 280 YNGKPATGLAIQLQTGANALATAEAVKQTVAELEPYFPDGMKMVTAYDTTPFIKISISEV 339 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 LV +++F+ + + L+ +I + ++ T+ +++L G ++ ++ G+VL Sbjct: 340 ARVLIEAIILVFVLMFVFLQNLRATLIPTLAIPVVILGTMGVMALAGFSINTLTMFGMVL 399 Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 IGL VD I+V E + + + S + + + + + FF Sbjct: 400 SIGLLVDDAIVVVENVERLMSEEGLSPKQATIKSMGQITGALVAIGVVMAAVFAPMAFFP 459 Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G R F++T+ S+ +S+ AI A+ +++ K K +F Sbjct: 460 GATGAVYRQFSLTIITSMSLSVMVAIIFSPALCATLLKPVKKKENGGWGPLGWFNRTLQK 519 Query: 539 AIQFMR 544 A R Sbjct: 520 ATIKYR 525 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 89/269 (33%), Gaps = 6/269 (2%) Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625 ++ F+ + + V L V + I L Sbjct: 236 QTRMSEPDQFENILLKVLPDGSQVRLKDVARVELGAENYAIQANYNGKPATGLAIQLQTG 295 Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 +++A ++ ++ P T + I + +I + I + + ++ Sbjct: 296 ANALATAEAVKQTVAELEPYFPDGMKMVTAYDTTPFIKISISEVARVLIEAIILVFVLMF 355 Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744 + + L + + I T+G AL G N + ++ IG V+D +VV + + Sbjct: 356 VFLQNLRATLIPTLAIPVVILGTMGVMALAGFSINTLTMFGMVLSIGLLVDDAIVVVENV 415 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801 + +S + KS+ + G V + PMA + G+ F++ + Sbjct: 416 --ERLMSEEGLSPKQATIKSMGQITGALVAIGVVMAAVFAPMAFFPGATGAVYRQFSLTI 473 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + ++ +I + + + K Sbjct: 474 ITSMSLSVMVAIIFSPALCATLLKPVKKK 502 Score = 60.1 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 79/246 (32%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V N+ + G ++++G ++ Q PG S + + Sbjct: 785 VRNNQGDMVPFSSFASWEWTYGPQRIESYNGVSAMEIQGQAAPGYSSGEAMMAMEQLISK 844 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 T + + + + + + + + W + + L Sbjct: 845 LPNGIGYEWTGTSLQEQQSGDFAPILYTISIFVVFLCLA---ALYESWSIPFSVMLVVPL 901 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 I + L GI+ ++ +LT +G S + +++ + + L + Sbjct: 902 GILGAVIATMLRGIQNDVYFQVGLLTTVGVSARNAILIVEFAKD---LQEQGKDLLEATL 958 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +++ L + TS+A V+P+A+ G + + + G++ +IF Sbjct: 959 EAVRLRLRPILMTSLAFIFGVMPLALSSGAGAASRNAIGTSVIGGMLGGTILAIFFVPLF 1018 Query: 820 LLFIYD 825 + Sbjct: 1019 FYTVRK 1024 >gi|306813681|ref|ZP_07447862.1| Putative efflux pump (Putative multidrug-efflux transport protein) [Escherichia coli NC101] gi|312966775|ref|ZP_07780993.1| acrB protein [Escherichia coli 2362-75] gi|281178485|dbj|BAI54815.1| multidrug efflux protein [Escherichia coli SE15] gi|305852955|gb|EFM53400.1| Putative efflux pump (Putative multidrug-efflux transport protein) [Escherichia coli NC101] gi|312288239|gb|EFR16141.1| acrB protein [Escherichia coli 2362-75] gi|315297209|gb|EFU56489.1| putative ATP synthase F0, A subunit [Escherichia coli MS 16-3] gi|330911161|gb|EGH39671.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli AA86] Length = 1035 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G D+ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 Q R + + L+ + + ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 42.0 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYD 825 + + Sbjct: 1020 FVLVKR 1025 >gi|217977632|ref|YP_002361779.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Methylocella silvestris BL2] gi|217503008|gb|ACK50417.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Methylocella silvestris BL2] Length = 1049 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 83/685 (12%), Positives = 188/685 (27%), Gaps = 48/685 (7%) Query: 4 NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 + +L ++ G + L + ++PS P + + V Sbjct: 9 PVFAWVLAIIVMLAGAVAVL-----TLPIAQYPSIAPPA-------------VSISVTYP 50 Query: 64 DFVNGFLQM-YSDELRSFLKKEGIG---VFSMRQIQN-KITLSFADSRFKENIADKVTLF 118 +Q + L + + ITLSF + +V Sbjct: 51 GASAETVQSTVVQVIEQQLSGLDHLLYFSSESDKDGSITITLSFDQGTNPDIAQVQVQNK 110 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 LQ +L ++ + + +V+ + + I D I + Sbjct: 111 LQLAQPRLPQAVQQQGIQVAKATKNFLVVVGFVSTDGAMTSADLGDFIASSIQDPISRTP 170 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + DP++L T +S N G + Sbjct: 171 GVGDYQLFGSQ-YAMRIWLDPAKLNNYALTPGDVSAAIQAQNVQVAAGELGGLPAVKNQQ 229 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 + + + + E + I Sbjct: 230 LNATIIGPSYL-------------QTPQQFGEILLRVEPTGAKVLLRDVARIELAGESYS 276 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 + + + T++ LR I S Sbjct: 277 VDTKYNGRPASALAVKLASGANALDTVKAVRATIEQLRPNFPSGVEAIYPYDTTPFVELS 336 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 T + LV +++++ + + L+ ++ + ++ T A+LSL G ++ ++ Sbjct: 337 IHGVVETLIVAVVLVFLIMYLFLQNLRATLIPTIAVPVVLLGTCAILSLAGFSINSLTMF 396 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IGL VD I+V E + ++ S + + + + + Sbjct: 397 GMVLAIGLLVDDAIVVVENVERVMEEDHLSPKEATRKSMDEISGALVGIALVLTAVFLPM 456 Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527 FFGG R F+IT+ S+++S+ A+ A+ I + + N Sbjct: 457 SFFGGSTGVIYRQFSITIVSSMILSVLVALVFTPALCATILKRPKEGGKRGFFGWFNRNF 516 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + + + ++ + + + +G + V+A Sbjct: 517 DRGNRRYVGVVKLAIAHPILSMLAFVGVTTVLVLVFVRIPSGFLPDEDQGVMFAQVVAPP 576 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + + ++ + E F V G + +K Sbjct: 577 GATSIRTQQVLDEVSDYLRTDESHNVEGVFEVNGFSFGGRGQNAGLIFVKLKDWSERPGE 636 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + +Q E+ + Sbjct: 637 QNKVQAIAGRAMARFGEIKDARVFA 661 Score = 78.2 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 87/244 (35%), Gaps = 6/244 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + + + + + L +++ + + +++ P Sbjct: 264 DVARIELAGESYSVDTKYNGRPASALAVKLASGANALDTVKAVRATIEQLRPNFPSGVEA 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 I + +I++ + + + +++ + L + + + T Sbjct: 324 IYPYDTTPFVELSIHGVVETLIVAVVLVFLIMYLFLQNLRATLIPTIAVPVVLLGTCAIL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +L G N + ++ IG V+D +VV + + + +S ++ KS++E G Sbjct: 384 SLAGFSINSLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEDHLSPKEATRKSMDEISGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 V ++ LPM+ +GGS F+I + ++++ ++ + I Sbjct: 442 LVGIALVLTAVFLPMSFFGGSTGVIYRQFSITIVSSMILSVLVALVFTPALCATILKRPK 501 Query: 829 KNAR 832 + + Sbjct: 502 EGGK 505 >gi|145599422|ref|YP_001163498.1| aminoglycoside/multidrug efflux system [Yersinia pestis Pestoides F] gi|145211118|gb|ABP40525.1| multidrug efflux protein [Yersinia pestis Pestoides F] Length = 1043 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 69/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S +TL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASVTLTFQAGTNPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L D ++ + + + ++++ + S + D + Sbjct: 110 QLQSAIKRLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDISDYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT+ + N G D+ Sbjct: 170 EGVGSVDAFGSQ-YAMRIWLDPNKLTNYQLTTSDIVSAIQSQNTQVAVGQLGGTPAVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEEFREITLRVNQDGSLVTLGDVAKIELGSEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + A L + Sbjct: 276 DYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPHGLEAKIAYETTPFVQA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGTFAVLSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + + + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALIGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + AM + +K I Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATL-----LKPIAPGHHHAKRG 510 Query: 534 IPDCIAIQFMRARFWG 549 F R Sbjct: 511 FFGWFNRMFDRNSHRY 526 Score = 83.6 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + + ++ ++ P Sbjct: 260 VTLGDVAKIELGSEKYDYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETTPFVQASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + + R+ KS+ + Sbjct: 380 FAVLSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + ++ +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALIGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ + L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNNRGKDLVEATLEASRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029 >gi|294635344|ref|ZP_06713839.1| inner membrane multidrug efflux protein BpeB [Edwardsiella tarda ATCC 23685] gi|291091281|gb|EFE23842.1| inner membrane multidrug efflux protein BpeB [Edwardsiella tarda ATCC 23685] Length = 1051 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 70/688 (10%), Positives = 181/688 (26%), Gaps = 51/688 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIILMLAGALAIM-----SLPVAQYPTVAPPA-------------VTVSASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ITL+F + +V Sbjct: 50 PGADAATVQNSVTQVIEQNMNGLDNLMYMSSTSDSAGNAAITLTFEAGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D + + Sbjct: 110 KLQLAMPSLPQEVQQQGVSVDKASSSILLVAGFISEDGSLSQDDIADYVASNIKDPLSRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L + T + + NN G G Sbjct: 170 QGVGSVQLFGSQ-YAMRIWLDPNKLNKYNLTPVDVISQIKVQNNQIAGGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + R + Sbjct: 229 QLNASIIVQTRL-------------KDPAEFGKILLKVQPDGSRVLLRDVARVELGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A L + Sbjct: 276 GTVARYNGKPAAGIAVKLATGANALDTAKAVKAELAKLAPYFPASLKTVYPYDTTPFVQL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV V+++ + + L+ ++ + ++ T A+L ++G ++ ++ Sbjct: 336 SIDEVVKTLLEAIVLVFAVMYLFLQNIRATLIPTIAVPVVLLGTFAILEIVGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ S+++S+ A+ + A+ + ++ Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPALCATMLKPIAKGSHGVQTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D + + V ++ + + + +G + Sbjct: 516 NRLFEKSTHHYTDSVGRILRGTGRYLVIYLLIVVGMGLLFIRLPTSFLPEEDQGVLLTMA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + + + + E F V G +K Sbjct: 576 QLPPGATQERTNNVLKQVTDYYETKEKHNVESVFTVSGFGFSGQGQNNGLAFISLKPWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIV 671 + + ++ + Sbjct: 636 RKGDENKVTAIIQRAAFAFSKITDAMVY 663 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 80/231 (34%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + + + +++ + ++ K+ P S Sbjct: 264 DVARVELGAENYGTVARYNGKPAAGIAVKLATGANALDTAKAVKAELAKLAPYFPASLKT 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + + + +++ + L + + + T Sbjct: 324 VYPYDTTPFVQLSIDEVVKTLLEAIVLVFAVMYLFLQNIRATLIPTIAVPVVLLGTFAIL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 + G N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 EIVGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKKSMEQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + +V++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + + + L + G L + IS I + + + ++ W Sbjct: 838 EAMAMMESLVAKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + M Sbjct: 898 FSVMLVVPLGVVGALLATSLRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAVDLMHKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 958 G--LVEATLEAVRMRLRPILMTSLAFILGVMPLVISNGAGSGAQNAVGTGVMGGMVSATI 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|127510967|ref|YP_001092164.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella loihica PV-4] gi|126636262|gb|ABO21905.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Shewanella loihica PV-4] Length = 1049 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 68/687 (9%), Positives = 180/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + + ++PS P + + + Sbjct: 8 RPIFAWVIAIIVMLAGVLSIM-----KLPVSQYPSIAPPTVV---------INAIYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTMEDTVTQVIEQRMTGIDHLRYISSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + + +++ + S + +D + Sbjct: 114 AMPLLPQEVQAQGVKVNKSSSGFLMVLGFVSQDGSLEKNDISDYVGSNILDPMSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP +L Q T+ + N G Sbjct: 174 EIQLFGAQ-YAMRIWLDPLKLTQYNLTSLDIMASIREQNAQVSAGQLGGAPSIAGQELNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + I + + + + Sbjct: 233 TVTAQSRL-------------QTAEEFRKIIIKSDPSGAKVYLEDVARVELGSESYSVES 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T E ++ + S Sbjct: 280 FYNGRPAAGLAIKLATGANALATAERVREKVDEMKPFFPQGLEVVYPYDTTPFVEKSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +++++ + + L+ ++ + ++ T A+LS G ++ ++ +V Sbjct: 340 VVHTLLEAVVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + +T V + F Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEDGLSPIEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 G R F++T+ ++ +S+ AI + A+ + + + Sbjct: 460 SGSTGVIYRQFSVTIVSAMALSVLVAIILTPALCATMLKPIAKGHHAVETGFFGWFNRTF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 +A RA + L + + +G + + Sbjct: 520 DKMTSRYEAGVAAMIKRAGRVMLIYVALTVAVGWIFMRMPTAFLPDEDQGILFTQAILPT 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + ++ + F V G +K P Sbjct: 580 NSTQESTKKVMSKISDFYLNETGDSVKSVFSVSGFSFAGSGQNMGLAFVGMKDWSERTGP 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ + ++ + + Sbjct: 640 GQDVKSVAGRAMGMFMQMKEAFVFAFV 666 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 80/240 (33%), Gaps = 6/240 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + V L V + + L +++A + ++ Sbjct: 255 PSGAKVYLEDVARVELGSESYSVESFYNGRPAAGLAIKLATGANALATAERVREKVDEMK 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + ++ + + + + +++ + + L + + Sbjct: 315 PFFPQGLEVVYPYDTTPFVEKSIEGVVHTLLEAVVLVFVIMYLFLQNFRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T + G N + A++ IG V+D +VV + + + +S + Sbjct: 375 VLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEDGLSPIEATK 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+++ G V + +PMA GS F++ + + ++ +I + + Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSVTIVSAMALSVLVAIILTPAL 492 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 72/249 (28%), Gaps = 11/249 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + V S + + N N Sbjct: 776 QYRMQPEDLDTWYVRNSQGEMVPFSAFATGTWEYGSPRLERFNGLPAMNIQGGTAQGYST 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + MV K + E + + I + L+ + Sbjct: 836 GAAMADIEAMVAKLPPGFGVEWNGLSYEERLSGNQAP----ALYALSI-MVVFLVLAALY 890 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W I + L I L G+ ++ +LT +G + + +++ + ++ Sbjct: 891 ESWSVPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVIGSFAIPMAFGIV 806 Y + ++ L + TS+A + V+P+A+ G AI G++ Sbjct: 951 ---YEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGT--GVL 1005 Query: 807 VAASSSIFI 815 SS F+ Sbjct: 1006 GGMMSSTFL 1014 >gi|253690284|ref|YP_003019474.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756862|gb|ACT14938.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1038 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 76/689 (11%), Positives = 186/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L L+++P P + + Sbjct: 8 RPIFAWVLAILLSLCGMLAI-----KSLPLEQYPDLAPP-------------SVRITASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ++ L+F + +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLMYMSSDSSNTGQARVMLTFEAGTNPDEARQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + ++ + + + +I++ + + + + I Sbjct: 110 QLQSAIRKLPQEVQQQGVTVSKTGDTNILMVAFVSTDGSMDKQDIADYVATNIQEPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L TT+ + N+ G D+ Sbjct: 170 SGVGEVSAYGSQ-YAMRIWLDPAKLMDYALTTSDVVRAIESQNSQVSVGQVGGVPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSAVTLANVAEVELGAERY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + + T + L + Sbjct: 276 DFLSRFNGQSASGLGVTLASGANELETDKRVRERIDELSRYFPHGMEAKIAFETSPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L G +L ++ Sbjct: 336 SITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYACGFSLNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQVQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ S+++S+ A+ + A+ + R Sbjct: 456 MAFFGGTTGAIYRQFSITIVTSMILSVLVAMILTPALCATLLKPLAKGQHHGRKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + M + W + + + + + +G V Sbjct: 516 NRSFTRTSLKYERGVGKILMSSGRWLLLYMGIIGVMAFLFFRLPTSFLPQEDRGVFTTQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + ++ ++ + F G+ R+ +K Sbjct: 576 QLPPGSTQQQTLQVVNKIEQYYLTQEKDTVTSVFSTIGSGPGGNGQNVARLFIRLKDWNE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 P S+ K R + + Sbjct: 636 RTTPESSSFAVIERATKAFRHIQEARVFA 664 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 85/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L+ V + D + + L + + + + +++ P Sbjct: 260 VTLANVAEVELGAERYDFLSRFNGQSASGLGVTLASGANELETDKRVRERIDELSRYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + +++ + + L + + + T Sbjct: 320 GMEAKIAFETSPFVKASITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A++ IG V+D +VV + + + +S R+ KS+ + Sbjct: 380 FAVLYACGFSLNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +GG+ F+I + ++++ ++ + + + Sbjct: 438 VQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSITIVTSMILSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 65.1 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 8/167 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G + L + IS + + + + ++ W + + + + L Sbjct: 853 FGLEWTGMSLQERLSGAQAPALYAISLLVVFLCLAALYESWTVPFSVMLVVPMGVLGALV 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 G+E ++ +LT++G S + +++ + + + + ++ + L Sbjct: 913 ATWARGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---MNQKGKDLVEATLEASRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A VLPMA G + + + G++ A +I Sbjct: 970 RPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVIGGMLAATFLAI 1016 >gi|22125337|ref|NP_668760.1| aminoglycoside/multidrug efflux system [Yersinia pestis KIM 10] gi|108808228|ref|YP_652144.1| aminoglycoside/multidrug efflux system [Yersinia pestis Antiqua] gi|108811505|ref|YP_647272.1| aminoglycoside/multidrug efflux system [Yersinia pestis Nepal516] gi|149365096|ref|ZP_01887131.1| multidrug efflux protein [Yersinia pestis CA88-4125] gi|165926931|ref|ZP_02222763.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis str. F1991016] gi|165935951|ref|ZP_02224521.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis str. IP275] gi|166011281|ref|ZP_02232179.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua str. E1979001] gi|166212605|ref|ZP_02238640.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua str. B42003004] gi|167399340|ref|ZP_02304864.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422675|ref|ZP_02314428.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424381|ref|ZP_02316134.1| acriflavine resistance protein D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467013|ref|ZP_02331717.1| acriflavine resistance protein D [Yersinia pestis FV-1] gi|218930088|ref|YP_002347963.1| aminoglycoside/multidrug efflux system [Yersinia pestis CO92] gi|229838640|ref|ZP_04458799.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895705|ref|ZP_04510876.1| multidrug efflux protein [Yersinia pestis Pestoides A] gi|229899206|ref|ZP_04514349.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901768|ref|ZP_04516890.1| multidrug efflux protein [Yersinia pestis Nepal516] gi|270489957|ref|ZP_06207031.1| putative ATP synthase F0, A subunit [Yersinia pestis KIM D27] gi|294504790|ref|YP_003568852.1| multidrug efflux protein [Yersinia pestis Z176003] gi|21958217|gb|AAM85011.1|AE013747_1 putative efflux pump [Yersinia pestis KIM 10] gi|108775153|gb|ABG17672.1| multidrug efflux protein [Yersinia pestis Nepal516] gi|108780141|gb|ABG14199.1| multidrug efflux protein [Yersinia pestis Antiqua] gi|115348699|emb|CAL21645.1| multidrug efflux protein [Yersinia pestis CO92] gi|149291509|gb|EDM41583.1| multidrug efflux protein [Yersinia pestis CA88-4125] gi|165916096|gb|EDR34703.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis str. IP275] gi|165921282|gb|EDR38506.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis str. F1991016] gi|165989959|gb|EDR42260.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua str. E1979001] gi|166206536|gb|EDR51016.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua str. B42003004] gi|166958382|gb|EDR55403.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051844|gb|EDR63252.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056263|gb|EDR66032.1| acriflavine resistance protein D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681697|gb|EEO77791.1| multidrug efflux protein [Yersinia pestis Nepal516] gi|229687608|gb|EEO79681.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695006|gb|EEO85053.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701511|gb|EEO89539.1| multidrug efflux protein [Yersinia pestis Pestoides A] gi|262362852|gb|ACY59573.1| multidrug efflux protein [Yersinia pestis D106004] gi|262366776|gb|ACY63333.1| multidrug efflux protein [Yersinia pestis D182038] gi|270338461|gb|EFA49238.1| putative ATP synthase F0, A subunit [Yersinia pestis KIM D27] gi|294355249|gb|ADE65590.1| multidrug efflux protein [Yersinia pestis Z176003] Length = 1043 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 69/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S +TL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASVTLTFQAGTNPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L D ++ + + + ++++ + S + D + Sbjct: 110 QLQSAIKRLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDISDYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT+ + N G D+ Sbjct: 170 EGVGSVDAFGSQ-YAMRIWLDPNKLTNYQLTTSDIVSAIQSQNTQVAVGQLGGTPAVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEEFREITLRVNQDGSLVTLGDVAKIELGSEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + A L + Sbjct: 276 DYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPHGLEAKIAYETTPFVQA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGTFAVLSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + + + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALIGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + AM + +K I Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATL-----LKPIAPGHHHAKRG 510 Query: 534 IPDCIAIQFMRARFWG 549 F R Sbjct: 511 FFGWFNRMFDRNSHRY 526 Score = 83.6 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + + ++ ++ P Sbjct: 260 VTLGDVAKIELGSEKYDYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETTPFVQASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + + R+ KS+ + Sbjct: 380 FAVLSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + ++ +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALIGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 77.4 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ + L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNNRGKDLVEATLEASRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029 >gi|238896772|ref|YP_002921517.1| integral transmembrane protein of acridine resistance [Klebsiella pneumoniae NTUH-K2044] gi|238549099|dbj|BAH65450.1| integral transmembrane protein of acridine resistance [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1036 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 72/682 (10%), Positives = 186/682 (27%), Gaps = 42/682 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L L Q + ++P+ P + Sbjct: 8 RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + + ITL+F + +V LQ Sbjct: 54 AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + + ++ + ++++ D + + S + D I Sbjct: 114 ATPLMPQEVQQQGISVEKSSSSFLLVAGFISDNPTTTQDDISDYVASNVKDPISRLNGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + D + L + T + + N+ G Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALQVQNDQIAAGQLGGTPALKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T A L+ + S Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ G+V Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + S+ + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + ++ + V ++ ++ + + +G + Sbjct: 520 QSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L+++ + + + E F V G +K Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDK 639 Query: 649 STIQNTEIVGPKISRELIRKGI 670 +++++ ++ + Sbjct: 640 NSVESIIKRATVAFSQIKDAMV 661 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + G + L V A+ V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680 + G + T K + ++ ++ I + + + + I + Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T ++FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + +S ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 854 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLA 913 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+ ++ +LT IG S + +++ + + M+ + ++ L Sbjct: 914 ATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--IIEATLEAARMRLR 971 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + V+P+ + G + + G++ A +I Sbjct: 972 PILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATLLAI 1017 >gi|324112960|gb|EGC06936.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia fergusonii B253] Length = 1037 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 66/681 (9%), Positives = 172/681 (25%), Gaps = 47/681 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +IC G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILICLTGTLAIF-----SLPVEQYPELSPP-------------NVRISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TL+F + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLTFEAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSALRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSIPQQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRAITLRVNQDGSEVKLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L V Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L ++ ++ Sbjct: 336 SIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLYAFDYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINP 527 + FFGG R F+IT+ ++++S+ A+ + A+ I++ K Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATILKPLHKGEQHGQKGFFGWF 515 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 F D + + +++ + ++ + + Sbjct: 516 NRVFNRNADRYERGVAKILHRSLRWLLIYLLLIGGMVVLFMRLPSSFLPQEDRGMFTTSV 575 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + + + + N + + + + ++ + Sbjct: 576 QLPSGSTQQQTLKVVEQVEKYFFTHEKDNIMSVFATVGSGPGGNGQNVARMFVRLKDWDE 635 Query: 648 LSTIQNTEIVGPKISRELIRK 668 + + + +K Sbjct: 636 RDPKTGSVFAIIDRATQAFKK 656 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 83/235 (35%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A + + ++ + P Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 F N + A++ IG V+D +VV + + + +S R KS+ + Sbjct: 380 FAVLYAFDYSINTLTMLAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRAATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 31/269 (11%), Positives = 80/269 (29%), Gaps = 13/269 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 D + V S ++ + N + Sbjct: 776 PYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAARGVST 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + +V + T + + + + S + + + + Sbjct: 836 GTAMEIMENLVHQLPGGFGLEWTAMSYQERLSGAQAP----ALYAI--SLLVIFLCLAAL 889 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W + + L + L + G+E ++ +LT+IG + + +++ + Sbjct: 890 YESWSVPFSVMLVVPLGVVGALLATWMRGLENDVYFKVGLLTVIGLAAKNAILIVEFAND 949 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803 + + + + L + TS+A VLPMA+ G + + + Sbjct: 950 ---MNQKGHDLLEATLHACRQRLRPILMTSLAFIFGVLPMAISNGAGSASQHAVGTGVMG 1006 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G++ A +I+ + + R Sbjct: 1007 GMISATILAIYFVPLFFVLVRRRFPLKPR 1035 >gi|192362116|ref|YP_001981946.1| protein-export membrane protein SecF [Cellvibrio japonicus Ueda107] gi|190688281|gb|ACE85959.1| protein-export membrane protein SecF [Cellvibrio japonicus Ueda107] Length = 387 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 149/346 (43%), Gaps = 6/346 (1%) Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547 + + + + + + R + I + P + R Sbjct: 27 ISFAALAVNGLKLGLDFTGGTQLEVLFDRPADLDKIRDVLEAEELKSPVAVLFGSDREVM 86 Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607 + L G +G + D+ VV + Sbjct: 87 IRTQDQMKEKALQKLRLSFAAKGNGAVLEGVERPEREYESFADVLVVSNASLDSVRQAKP 146 Query: 608 FQNFDGEKNFLVRLQ-----YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 + + S+ + +++ + ++++E VGP+I Sbjct: 147 LGDSGDYGRVEYSQRDGKVLVIVEKSIESAYLNQLIGDMESATGADIQLRSSEFVGPQIG 206 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 EL +G +G++ + + +Y+ ++F+W F++GAI LI ++ T+G FALF +F+L Sbjct: 207 GELRDQGGLGLLAAFALVFLYVAVQFQWKFSVGAIIGLIHNVIITVGCFALFQWDFDLNV 266 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 +AAVL LIGYS+ND +VV+DR+R+N ++ + S ++I+ SI +TLGR++ TS + ++ Sbjct: 267 LAAVLALIGYSINDTIVVFDRIRENFRILRKTSS-HEVINISITQTLGRTIMTSASVYLV 325 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + + G V+ FA+ + GIV SS++IA+ I + + Sbjct: 326 LFSLYFIAGEVLQGFALALIIGIVAGTYSSVYIASNIAAALGVTKE 371 >gi|29833380|ref|NP_828014.1| preprotein translocase subunit SecF [Streptomyces avermitilis MA-4680] gi|29610503|dbj|BAC74549.1| putative preprotein translocase SecF subunit [Streptomyces avermitilis MA-4680] Length = 368 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 85/309 (27%), Positives = 141/309 (45%), Gaps = 14/309 (4%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L + F+ R GISIL +I +I L GLN GI+F+GG Sbjct: 10 RLHRGEVGYDFVGNRKIWYGISILITITAILGLTVRGLNMGIEFQGGAVFTTPKTSVSVS 69 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 R E+ I + G + + + + +K +I Sbjct: 70 QAERYAEEASGHDAIVQKLGSGGLRVQIAGVDTGKSDQIKAELSQNLKVDSEKINAD--- 126 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 +VGP ++ K G++I I ++IY+ I F+W A+ A+ LI DIT T+G + Sbjct: 127 ----LVGPSWGEQIANKAWQGLVIFMILVVIYLAIAFEWRMAVAALVALIHDITITVGIY 182 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769 AL G E V +LT++GYS+ D VVV+D +++ K T ++ D+ ++SIN TL Sbjct: 183 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDLTKQTRWTYSDVANRSINSTL 242 Query: 770 GRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 RS+ T++ A + V + GG + ++ + G+ A SSIFIA P++ + Sbjct: 243 VRSINTTVVALLPVAGLLFIGGGVLGAGTLNDISLSLFVGLAAGAYSSIFIATPLVADLK 302 Query: 825 DWRAKNARI 833 + + + Sbjct: 303 EREPQMKAL 311 >gi|147677371|ref|YP_001211586.1| preprotein translocase subunit SecF [Pelotomaculum thermopropionicum SI] gi|146273468|dbj|BAF59217.1| preprotein translocase subunit SecF [Pelotomaculum thermopropionicum SI] Length = 298 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 150/290 (51%), Gaps = 7/290 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 F++ R IS+L + I LF+ GLN GIDF GG + N+P + VRS L Sbjct: 8 FHFIKLRKIWYAISVLIIVPGIISLFSQGLNMGIDFSGGSLFDLKFNQPTAVEQVRSVLG 67 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + S Q + + V + + E + T+Q +E VGP Sbjct: 68 GFGLEGASIQRSNETD-------FLIRTRELTEEESTKVVQALNEKLGGVTLQRSERVGP 120 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 + RELI K + + ++++ M+IYI RF++ + AI +L+ D+ +G F++F IE + Sbjct: 121 VVGRELIMKALGALAVASVLMVIYIAWRFEFKQGVAAIISLLHDVLVVVGIFSIFQIEID 180 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 +AA+LT+IGYS+ND +V++DR+R+N+ + D+I+ S+ +T+ RS+ T + Sbjct: 181 SAFIAAILTIIGYSINDTIVIFDRIRENLLNKKKGDALEDIINASLWQTIARSINTVLTV 240 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 ++ + + GG+ I S + + G+ A SSIF A+P+ + Sbjct: 241 EFVLVALLLLGGTTIRSMVLALLVGVTSGAYSSIFNASPLWFDFKRLERR 290 >gi|218700009|ref|YP_002407638.1| putative efflux pump [Escherichia coli IAI39] gi|218369995|emb|CAR17769.1| Putative efflux pump (Putative multidrug-efflux transport protein) [Escherichia coli IAI39] Length = 1035 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 78/683 (11%), Positives = 187/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G D+ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQ---FMRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592 Q R + + + L L ++ V P + Sbjct: 520 EDKYQQGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 42.0 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYD 825 + + Sbjct: 1020 FVLVKR 1025 >gi|324115130|gb|EGC09094.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia fergusonii B253] gi|325498844|gb|EGC96703.1| multidrug efflux system protein [Escherichia fergusonii ECD227] Length = 1037 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 71/689 (10%), Positives = 183/689 (26%), Gaps = 51/689 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G+L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSISAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFESGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D I Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNIKDSISR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + I Sbjct: 228 QQLNASIIAQTRL-------------KDPRQFGNVTLRVNTDGSVVHLKDVARIELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDAATAIKAKLAELQPFFPQGMKVVYPYDTTPFVK 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAILLVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + ++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMIEDNLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVTAEHHENKSGFFAW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + ++ + + ++ + + L + +G Sbjct: 515 FNRTFDHSVNHYTNSVSRIIGVTGRYLLIYVLIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKEEKANVESVFTVNGFSFSGQGQNAGMAFVSLKPWE 634 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671 ++ + + ++ ++ Sbjct: 635 ERSGKENSAEAVISRAKQALGQIRDGFVI 663 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 93/269 (34%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPRQFGNVTLRVNTDGSVVHLKDVARIELGGENYNVIARINGKPAAGLGI 291 Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + ++ ++ P + I + + + + + + Sbjct: 292 KLATGANALDAATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKLSIHEVVKTLFEAILLV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++ R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMIEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 65.1 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 69/183 (37%), Gaps = 5/183 (2%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFA 693 + + + L T + G L +I +S + + + + ++ W Sbjct: 838 DAMALMESFATKLPTGIGYDWTGMSYQERLSGNQAPALIAVSFVVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L I L LF + ++ + +LT IG S + +++ + + M Sbjct: 898 FSVMLVVPLGIVGVLLAATLFNQQNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 + S+ L + TS+A + VLP+A+ G+ + G++ S+ Sbjct: 958 G--VIEATLSSVRMRLRPILMTSLAFILGVLPLAISSGAG-SGAQNAVGIGVMGGMISAT 1014 Query: 814 FIA 816 +A Sbjct: 1015 LLA 1017 >gi|163857339|ref|YP_001631637.1| AcrB/AcrD/AcrF family protein [Bordetella petrii DSM 12804] gi|163261067|emb|CAP43369.1| AcrB/AcrD/AcrF family protein [Bordetella petrii] Length = 1072 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 73/709 (10%), Positives = 181/709 (25%), Gaps = 51/709 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L L Q + ++P+ + + V+ Sbjct: 8 RPVFAWVVAIVLMMAGALAIL-----QLPVAQYPNIASPA-------------ISIRVNY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 + + + + ITL+FA + +V Sbjct: 50 PGASAQTVQDSVVQVIEQQMNGIDNLNYISSESNSDGSMSITLTFAQGTDPDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L ++ ++ + + + ++++ + + + D + + Sbjct: 110 KLAVAQPLLPLEVQQQGIRVSKATKNFLIVAGFISTDGSMAKEDLANYVAANVQDPVSRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L TT + N G Sbjct: 170 AGVGDFQLFGSQ-YAMRIWLDPDKLLAFDLTTVDVMNAVKEQNVQVSSGELGGLPAMRGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + Sbjct: 229 QLNATIIGPSRL-------------QTPEEFGRILLKVNADGSQVRLSDVARVSLGAQSY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T++ L+ P + Sbjct: 276 SIDSYYNGKPASGLAIKLAPGANALDTVDAVRDTINRLKPFFPPGMDVVYPYDTSPFVAL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ Sbjct: 336 SIESVIHTLIEAIILVFLVMYLFLQNLRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMVEEGLSPRQATRKSMGQITGALIGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSI 523 + FFGG R F+IT+ S+++S+ AI A+ +++ Sbjct: 456 MAFFGGSTGVIYRQFSITIVSSMVLSVLVAIIFTPALCATLLKRVPKGHHAARTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + +A R + + +L + +G + V Sbjct: 516 NRFFERSTHGYANSVARGLGRTKRLMLIYLVLLVAMGWMFTRIPTSFLPNEDQGILFAQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A +E+ + + F V G + ++ Sbjct: 576 QAPAGATAERTSHTVEAATRYLLEDEKDAVASVFAVHGFSFGGRGQNSAILFIKLRDWKE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + + V M + + F + Sbjct: 636 RGDAALKVGALAQRANAYFATHLHDARVTAFAPPAVMELGNALGFDFQL 684 Score = 83.2 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 88/243 (36%), Gaps = 7/243 (2%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 V R +L + S+ N ++L V + + + P Sbjct: 263 SDVARVSLGAQSYSIDSYYNGKPASGLAIKLAPGANALDTVDAVRDTINRLKPFFPPGMD 322 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 + P ++ + I +I + I + + +++ + L + + + T G Sbjct: 323 VVYPYDTSPFVALSI-ESVIHTLIEAIILVFLVMYLFLQNLRATLIPTLAVPVVLLGTFG 381 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 A FG N + ++ IG V+D +VV + + + +S R KS+ + Sbjct: 382 VLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEEGLSPRQATRKSMGQIT 439 Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 G + ++ +PMA +GGS F+I + +V++ +I + + Sbjct: 440 GALIGIALVLSAVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVLVAIIFTPALCATLLKR 499 Query: 827 RAK 829 K Sbjct: 500 VPK 502 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 69/198 (34%), Gaps = 8/198 (4%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + + + T + G L + IS I + + + ++ W Sbjct: 838 EAMAEMERIAATMPTGVGFQWTGLSYEERLSGSQAPALYAISLIVVFLCLAALYESWAIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L L G+ ++ +LT +G S + +++ + + Y Sbjct: 898 TSVMLVVPLGVIGVLAATLLRGLSNDVYFQVGLLTTVGLSAKNAILIVEFAK---AHYEE 954 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 S + + + L + TSMA + V+P+A+ G + + G++ Sbjct: 955 GASLVEAAVHAARQRLRPILMTSMAFILGVVPLAISSGAGSGSQHAIGTGVIGGMLAGTF 1014 Query: 811 SSIFIAAPILLFIYDWRA 828 +IF + + Sbjct: 1015 LAIFFVPAFFVVMLRLFK 1032 >gi|13539232|emb|CAC35725.1| AcrB protein [Enterobacter aerogenes] Length = 1048 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 67/685 (9%), Positives = 175/685 (25%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLSIM-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFQSGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMDPTKLNNFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + + Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T A + + S Sbjct: 280 KFNGQPASGLGIKLATGANALDTANAIRAELAKMEPYFPSGLKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L++ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAVFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGGHGEHKGFFGWFNRMF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + V I+ + + + +G Sbjct: 520 DKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLSMAQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + ++ + + E F V G +K Sbjct: 580 GASQERTQKVLDEMTDYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 ENKVEAITGRAMARFSQIKDAMVFA 664 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + DI + + L +++ + K+ Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A+FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILAVFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMAMMEQLASKLPSGVGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|94312852|ref|YP_586061.1| multidrug efflux system protein [Cupriavidus metallidurans CH34] gi|93356704|gb|ABF10792.1| multidrug efflux system [Cupriavidus metallidurans CH34] Length = 1048 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 69/686 (10%), Positives = 183/686 (26%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L ++++P+ P + Sbjct: 8 RPIFAWVIALVIMLAGVLSI-----RTLPINQYPAIAPPTI---------AISVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L + + IT++F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGLDRLRYISSESNSDGSMTITVTFEQGTNPDIAQVQVQNKLAL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T +++ + S I+ D + + Sbjct: 114 ATPLLPQEVQQQGIRVTKSVRNFLLIVGLISTDPNMTREDLSNYIVSNIQDPLSRTAGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L +S N G Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNSYQLAPLDVSNAIKAQNVQVASGQLGGLPAVRGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V K + + + + ++ Sbjct: 233 TVIGKTRL-------------QTAEQFGDILLKVNPDGSQVRLKDVADVALGGQDYTINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T++ A L P + S Sbjct: 280 QYNGRPASGIAIRLASGANALETVKNIHNTLAQLEPTFPPGIKVVFPYDTTPVISDSIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VIKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEDGLGPKEAARKSMGQIQGALVGIALVLSAVFLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++++S+ A+ + A+ + + + + Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVLVALVLTPALCATMLQPIEKGDHGEHKQGFFGWFNRS 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + ++ R + + + + + +G + V Sbjct: 520 FIRSTQSYERGVSGILKRRAPFLLIYLAIVVVMGFLFTRIPTSFLPEEDQGVLYAQVQTP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 ++ L+ ++ ++ + E F V G + ++K Sbjct: 580 AGSSAERTQAVLDQMRNYLLNDEGKIVESLFTVNGFNFAGRGQSSGLAFILLKPFKDREG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 +++ + Sbjct: 640 DATSVFDLTKRAQAKFSTFRDSLAFA 665 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 30/253 (11%), Positives = 79/253 (31%), Gaps = 9/253 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + G Q ++G + + G S + K Sbjct: 790 VRNDKGDMVPFSSFATGKWGFGSPKLQRYNGVPAVEILGEPAAGKSSGEAMAAVEEIMKQ 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + + L Sbjct: 850 MPAGISYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT +G S + +++ + ++ L+ + Sbjct: 907 GVIGALLATLARGLSNDVFFQVGLLTTVGLSAKNAILIVEFAKE---LHDHGKGLVEAAV 963 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TSMA + V P+AV G + + G++ A +IF Sbjct: 964 EACRMRLRPIIMTSMAFMLGVFPLAVSQGAGAGSQHAIGTGVIGGMITATVLAIFWVPLF 1023 Query: 820 LLFIYDWRAKNAR 832 + + + + + Sbjct: 1024 FVVVSALKERRGK 1036 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 6/220 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V Q I+ Q + + +++ + + ++ Sbjct: 258 SQVRLKDVADVALGGQDYTINAQYNGRPASGIAIRLASGANALETVKNIHNTLAQLEPTF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + + I + I ++ + + + + +++ + + L + + + Sbjct: 318 PPGIKVVFPYDTTPVISDSIHEVIKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEDGLGPKEAARKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 + G V ++ LPMA +GGS F+I + Sbjct: 436 GQIQGALVGIALVLSAVFLPMAFFGGSTGVIYRQFSITIV 475 >gi|291617083|ref|YP_003519825.1| AcrB [Pantoea ananatis LMG 20103] gi|291152113|gb|ADD76697.1| AcrB [Pantoea ananatis LMG 20103] Length = 1053 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 74/686 (10%), Positives = 190/686 (27%), Gaps = 42/686 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ I G+L + ++P P + Sbjct: 8 RRPVFAWVIALCIMLFGILSI-----RSLPVAQYPDVAPP---------QISVQATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK--ITLSFADSRFKENIADKVTLFL 119 + + + ++ + L + + I ++F + +V + Sbjct: 54 SAETLESSVTQVIEQQLTGLDGLLYFSSTSTASTGQVKINVTFKQGTDPDIAQVQVQNKV 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 Q S+L + + +++ S A + + ++ D + Sbjct: 114 QQAESRLPSAVTSQGVTVQKAQSDFLLILAVYDKSNKSSASDVADYMVSNMEDTLARVTG 173 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 + DPS+L + ++ N G + + Sbjct: 174 VGNVQVFGA-EYAMRIWLDPSKLASYSLMPSDVTTALESQNTQVSSGQLGAQPSSNKQQL 232 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 V + + + + + + Sbjct: 233 VATVRSRSRL-------------QTPEQFRNIVLKSQADGSVVRLSDVARVEMGDEDYSA 279 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + + T E R+ + S Sbjct: 280 NVMANGHPASGMAIQLASGANALSTAEKVKSTIDEFRSSMPAGYEIAYPLDSTDFVKISI 339 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 T LV+IV+F+ + + L+ ++ + ++ T +LS G ++ ++ G Sbjct: 340 EEVVKTLVEAVILVVIVMFVFLQNIRTTLIPTIAVPVVLLGTFGVLSFFGYSINTLTMFG 399 Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 +VL IGL VD I+V E + + + + + + + + Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMREEGLPPREATEKSMREITGALVGIALVLSAVFLPMT 459 Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535 FF G R F+IT+ S+++S+ A+++ A+ +++ S F Sbjct: 460 FFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLLKPHNHDSGRNGFFGWFNQRY 519 Query: 536 DCIAIQF--------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + ++ R+ + + +L C++ + + +G I + Sbjct: 520 ENVQARYQRGVGKVMHRSVRYLLLYGVLLIGCAVLYMRLPTGFLPTEDQGYIMVQYQLAP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + R +Q + + + + LV G+ +K Sbjct: 580 GATENRTREVRRQVQQYFATQEKDNVNVSMLVDGFSFAGNGQNAGVGFISLKNWRDRKGS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673 ++ + I + Sbjct: 640 ENSADAIAGRAMAALSRIRDAQIFVL 665 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V LS V + + + + ++++ ++ + +P Sbjct: 262 VRLSDVARVEMGDEDYSANVMANGHPASGMAIQLASGANALSTAEKVKSTIDEFRSSMPA 321 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + I + + ++ + I ++I +++ + L + + + T Sbjct: 322 GYEIAYPLDSTDFVKISIEEVVKTLVEAVILVVIVMFVFLQNIRTTLIPTIAVPVVLLGT 381 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G + FG N + ++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 382 FGVLSFFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMREEGLPPREATEKSMRE 439 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ LPM + GS F+I + +V++ ++ + + + Sbjct: 440 ITGALVGIALVLSAVFLPMTFFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLL 499 Query: 825 D 825 Sbjct: 500 K 500 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 8/206 (3%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY 683 G + + + L G +L + + IS I + + Sbjct: 830 QGSAAEGKSSGDAITAMEKLAATLPAGTTFAWSGLSYQEKLSGNQALSLYGISLIVVFLC 889 Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 + ++ W L + + L + +L L G+E ++ A+LT+IG S + +++ + Sbjct: 890 LAALYESWAVPLSVMLVVPLGVIGSLLAITLRGLENDVYFQVALLTIIGLSSKNAILIVE 949 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799 + Y S + + L + TS+A VLP+A+ G + + Sbjct: 950 FAEE---HYRKGESLINAAVHAATMRLRPIIMTSLAFTAGVLPLAISTGAGANSRIAIGT 1006 Query: 800 PMAFGIVVAASSSIFIAAPILLFIYD 825 + G + A +IF + + Sbjct: 1007 GIIGGTLTATLLAIFFVPLFFVLVRR 1032 >gi|215486590|ref|YP_002329021.1| predicted multidrug-efflux transport protein [Escherichia coli O127:H6 str. E2348/69] gi|215264662|emb|CAS09033.1| predicted multidrug-efflux transport protein [Escherichia coli O127:H6 str. E2348/69] Length = 1035 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFARVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G D+ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 Q R + + L+ + + ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 42.0 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYD 825 + + Sbjct: 1020 FVLVKR 1025 >gi|154250020|ref|YP_001410845.1| protein-export membrane protein SecF [Fervidobacterium nodosum Rt17-B1] gi|154153956|gb|ABS61188.1| protein-export membrane protein SecF [Fervidobacterium nodosum Rt17-B1] Length = 298 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 158/297 (53%), Gaps = 10/297 (3%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + I F+ R++ + +S + I SI FT G N G++F GG ++ V A++ + ++ VR Sbjct: 1 MKIDFVGKRYFFMALSAVLIIVSIISFFTKGFNLGLEFIGGSEIVVKASKDMTVADVRQK 60 Query: 598 LESLQIGDISFQNF-----DGEKNFLVRLQYQPGDSVAQ----TRVLEMVKKKITEIVPL 648 + SL + + E + + P D Q T + K E + Sbjct: 61 ISSLGQEFTNARILEVHALGQETDKTFSIVVAPKDEKGQLRVYTADEKAEISKKIENLLN 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + + + + + E+ ++ + + +L+Y+ +RFK+ F +GAI LI D+ T+ Sbjct: 121 AKVASFNEISGDAANEIKNLTWKAIVFTLLGILVYVALRFKFSFGVGAILALIHDVIITM 180 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 GF+++FGIE N+ A+AA+LTL+GYSVND ++V+DR+R+ +++ SIN Sbjct: 181 GFYSIFGIEMNIAAIAALLTLVGYSVNDTIIVFDRIRE-FGKKFRGKDIATIVNDSINSV 239 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 L R++ TS+ F +VL + ++ I SFA M G+VV SSIFIA+P+++ Sbjct: 240 LVRTINTSLTTFFTVLMLLLFSTGGIKSFAFGMTIGVVVGTYSSIFIASPVVIKWVK 296 >gi|218550550|ref|YP_002384341.1| multidrug efflux system protein [Escherichia fergusonii ATCC 35469] gi|218358091|emb|CAQ90737.1| multidrug efflux system protein [Escherichia fergusonii ATCC 35469] Length = 1037 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 71/689 (10%), Positives = 183/689 (26%), Gaps = 51/689 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G+L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSISAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFESGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D I Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNIKDSISR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + I Sbjct: 228 QQLNASIIAQTRL-------------KDPRQFGNVTLRVNTDGSVVHLKDVARIELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDAATAIKAKLAELQPFFPQGMKVVYPYDTTPFVK 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAILLVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + ++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMIEDNLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVTAEHHDNKSGFFAW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + ++ + + ++ + + L + +G Sbjct: 515 FNRTFDHSVNHYTNSVSRIIGVTGRYLLIYVLIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKEEKANVESVFTVNGFSFSGQGQNAGMAFVSLKPWE 634 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671 ++ + + ++ ++ Sbjct: 635 ERSGKENSAEAVISRAKQALGQIRDGFVI 663 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 93/269 (34%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + G + L V + V + +E +G+ + + Sbjct: 232 ASIIAQTRLKDPRQFGNVTLRVNTDGSVVHLKDVARIELGGENYNVIARINGKPAAGLGI 291 Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + ++ ++ P + I + + + + + + Sbjct: 292 KLATGANALDAATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKLSIHEVVKTLFEAILLV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + ++ R+ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMIEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 65.1 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 69/183 (37%), Gaps = 5/183 (2%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFA 693 + + + L T + G L +I +S + + + + ++ W Sbjct: 838 DAMALMESFATKLPTGIGYDWTGMSYQERLSGNQAPALIAVSFVVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L I L LF + ++ + +LT IG S + +++ + + M Sbjct: 898 FSVMLVVPLGIVGVLLAATLFNQQNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 + S+ L + TS+A + VLP+A+ G+ + G++ S+ Sbjct: 958 G--VIEATLSSVRMRLRPILMTSLAFILGVLPLAISSGAG-SGAQNAVGIGVMGGMISAT 1014 Query: 814 FIA 816 +A Sbjct: 1015 LLA 1017 >gi|270264594|ref|ZP_06192859.1| toluene efflux pump membrane transporter TtgB [Serratia odorifera 4Rx13] gi|270041277|gb|EFA14376.1| toluene efflux pump membrane transporter TtgB [Serratia odorifera 4Rx13] Length = 1044 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 186/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + Sbjct: 8 RPIFAWVLAIILCLTGALAIF-----SLPVEQYPDLAPP-------------NVRISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S + + +TL+F +V Sbjct: 50 PGASAQTLENTVTQIIEQNMTGLDNMMYMSSQSTNTGRATVTLTFEAGTDPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L + + + + ++++ + + ++ D + Sbjct: 110 QLQAAIKRLPQAVQTQGVTVSKSGDTTLMMVAFVSTDGSMDKQDIADYLVSNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L TT + N G D Sbjct: 170 NGVGSMDVYGSQ-YAMRIWLDPNKLTSYQLTTEDVVTAIKSQNAQVAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEQFKQITLRVNQDGSLVTLGDVSTIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T + A L V Sbjct: 276 DFLSRYNGMQAAGMNIKLASGANELQTDQLVKDKIAELSQYFPHGLEAKVAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIKDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLPPREATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ S+++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLLKPLAKGHHHGKRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A + + +L + ++ + + +G + V Sbjct: 516 NRMFNRNADRYERGVARVLHFSLRYMAIYLLLLAGMALLFIKLPSSFLPQEDRGVFTVQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L +E ++ ++ + D F G+ R+ +K Sbjct: 576 QLPPGSTLQQTAKVVEKVEHYFLTKEQQDVLSVFSTIGAGPGGNGQNVARMFIRLKDWDL 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 +T + ++ ++ Sbjct: 636 RTSGANTSFDIIERATHAFSKINEARVIA 664 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 91/241 (37%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + + + + ++++ ++++ P Sbjct: 260 VTLGDVSTIELGGENYDFLSRYNGMQAAGMNIKLASGANELQTDQLVKDKIAELSQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKVAYETTPFVKASIKDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + FG N + A++ IG V+D +VV + + + + R+ KS+ + Sbjct: 380 FAILSAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 76/262 (29%), Gaps = 11/262 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + A V S ++ + N + Sbjct: 776 PFRMLPGDIDKWYVRNSAGGMVPFSAFSTSHWEYGSPRLERYNGSSAVEIVGEAAEGVST 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + ++V + T T + + + + + I L + Sbjct: 836 GTAMAEMEKIVSQLPTGFGLEWTAMSYQERLSGSQAP----ALYALSL-LIVFLCLAALY 890 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W + + L + + L G+E ++ +LT+IG S + +++ + + Sbjct: 891 ESWSIPFSVMLVVPLGVIGAVAATWLRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE- 949 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 L ++ L + TS+A VLPM + G + + G Sbjct: 950 --LNHKGQDLMSATLEASRMRLRPILMTSLAFIFGVLPMTISSGAGSGSQHAVGTGVMGG 1007 Query: 805 IVVAASSSIFIAAPILLFIYDW 826 ++ A +IF + + Sbjct: 1008 MISATLLAIFFVPLFFVLVRRR 1029 >gi|262281243|ref|ZP_06059025.1| AdeY [Acinetobacter calcoaceticus RUH2202] gi|262257474|gb|EEY76210.1| AdeY [Acinetobacter calcoaceticus RUH2202] Length = 1058 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 65/554 (11%), Positives = 153/554 (27%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGIDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNTLSDSDIKDYVNSSIKEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N+ G Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTNYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + LR + + Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTADAVEHRLTELRKNYPAGLADKLAYDTTPFIRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + ++ + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATSRSMEQISGALIGITSVLTAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A++ A+ I++ N + F Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 M + Sbjct: 516 RGFNNGFDRMSHSY 529 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 83/248 (33%), Gaps = 8/248 (3%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + L +++ +E ++ + P Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAGGLAIKIATGANALDTADAVEHRLTELRKNYPA 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 R I + +I + I + I +++ + W + + + + T Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +FG N + A++ IG V+D +VV + + + +S+ + Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATSRSMEQ 437 Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823 G + TS+ +PMA +GG VI F+I + +V++ ++ + I Sbjct: 438 ISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496 Query: 824 YDWRAKNA 831 N Sbjct: 497 LKQHDPNK 504 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 71/245 (28%), Gaps = 15/245 (6%) Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 E + + S + +E + K+ + + Sbjct: 809 EWTYGSPRLERYNGVSSVNIQGTPAPGVSSGDSMKAMEEIIAKLPSMGLQGFDYEWTGLS 868 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 + + + + I L + W + + L I + G+ Sbjct: 869 LEERESGAQAPFLYALSLLIVFLCLAALYESWSIPFSVLLVVPLGIIGAI-ILTYLGMII 927 Query: 719 --------NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 N+ A++ +IG S + +++ + ++ L D + L Sbjct: 928 KGDPNLSNNIYFQVAMIAVIGLSAKNAILIVEFAKE---LQEKGEDLIDATLHASKMRLR 984 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + T++A VLP+A+ G S + G++ A IF ++I Sbjct: 985 PIIMTTLAFGFGVLPLALSTGAGAGSQHSVGYGVLGGVLSATFLGIFFIPVFYVWIRSIF 1044 Query: 828 AKNAR 832 + Sbjct: 1045 KYKPK 1049 >gi|237745456|ref|ZP_04575936.1| acriflavin resistance transmembrane protein [Oxalobacter formigenes HOxBLS] gi|229376807|gb|EEO26898.1| acriflavin resistance transmembrane protein [Oxalobacter formigenes HOxBLS] Length = 1066 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 75/614 (12%), Positives = 167/614 (27%), Gaps = 50/614 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I G+L L + ++P+ P + + V Sbjct: 8 RPIFAWVIAIFITLAGILSIL-----NLPVSQYPNVAPP-------------QVTVTVTY 49 Query: 63 DDFVNGFLQ-MYSDELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 ++ + + R ITLSF E A V Sbjct: 50 PGATAKTVEDSVIQIIEQEMNGATGLQYFESESRTGAGSITLSFTPDTDVELAAVDVLNR 109 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 L+ V S+L + + + + + I+ + R + +I Sbjct: 110 LKRVESRLPEAVMQQGVNINKSRSNFLAIVSLISTDGRMDRIDLGDYVYRNVLYEIKRLP 169 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + DP +L L T ++ N ++ Sbjct: 170 GVGDATVFGS-EKAMRVWIDPIKLTGLNLTAGDVANAIRNQNTVVTSGAIANPPNTGAET 228 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 V ++ + + I Sbjct: 229 FTANVNVHGQL-------------QTVEEFENIVLRANTDGSVVRLKDVARIELGGQSYD 275 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 L ++ A + +++ L +E S Sbjct: 276 TYARLNGNPVSGFGVQPTATANTMAVMQSIRDKMEELSQYFPEGVTYSIENDTSKFVSAS 335 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 T LV I++++ + ++ ++ + + ++ T A++ LG ++ + ++ Sbjct: 336 IHEVIKTLFEGIFLVFIIMYLFLQNFRYTIIPTIVVPIALLGTFAVMKALGFSINMLTMF 395 Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ +D I+V E + + S + + I + + + Sbjct: 396 GMVLSIGILIDDAIVVVENVERIMAEEGLSPRDATYKAMGQITGAIIGISTVLTAVFIPM 455 Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSID 524 FF G R F+ITM S++ S F A+S+ A+ I + + Sbjct: 456 AFFSGSVGAIYRQFSITMVASMIFSAFLALSLTPALCATILKPIDPNAHSEKRGFFGWFN 515 Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 S ++ F + + + + + + +G + V Sbjct: 516 RRFHSMTLTYERQVSKMFGKTMRYMLIYGAIVLCAAFMFWKLPTSFLPNEDQGYVYTNVQ 575 Query: 585 ANRPVDLSVVRSNL 598 + L Sbjct: 576 LPAGATQARTLETL 589 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 87/235 (37%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V Q D + + +++A + + +++++ P Sbjct: 259 VRLKDVARIELGGQSYDTYARLNGNPVSGFGVQPTATANTMAVMQSIRDKMEELSQYFPE 318 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + E K I + I + + I +++ + + + + + + + T Sbjct: 319 GVTYSIENDTSKFVSASIHEVIKTLFEGIFLVFIIMYLFLQNFRYTIIPTIVVPIALLGT 378 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N+ + ++ IG ++D +VV + + + +S RD K++ + Sbjct: 379 FAVMKALGFSINMLTMFGMVLSIGILIDDAIVVVENV--ERIMAEEGLSPRDATYKAMGQ 436 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G + S +PMA + GSV F+I M ++ +A ++ + + Sbjct: 437 ITGAIIGISTVLTAVFIPMAFFSGSVGAIYRQFSITMVASMIFSAFLALSLTPAL 491 Score = 53.2 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 80/227 (35%), Gaps = 11/227 (4%) Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 S S + Q +R+ P + + + + + +I + T Sbjct: 796 SAFTSTAWNNGPIQLIRYNGYPAMRITGAPAEGYSTGDAMNEMVSLMQQIPEGFGYEWTG 855 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 + + + + S +A+ + + ++ A+ L++ + +F Sbjct: 856 QSLEEQASGSQAPMLYAL--SLLAVFLCLAALYESTSIPVAVL-LVVPLGVIGALIGVFI 912 Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G+ ++ ++ IG S + +++ + + L +++ + Sbjct: 913 RGMPNDVYFKVGLIATIGLSAKNAILIVEFAKD---LQAQGKGLIRSTLEAVRLRFRPII 969 Query: 774 YTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAA 817 TS+A + V+P+A+ G+ + + FG++ A +++ Sbjct: 970 MTSLAFILGVVPLAIASGAGSAAQRAIGTGVLFGMITATVLAVYFVP 1016 >gi|283784288|ref|YP_003364153.1| acriflavin resistance protein B [Citrobacter rodentium ICC168] gi|282947742|emb|CBG87297.1| acriflavin resistance protein B [Citrobacter rodentium ICC168] Length = 1049 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 67/690 (9%), Positives = 175/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTIAATY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDTISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP+ L T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPTALNNYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T + + Sbjct: 276 DVIAKFNGQPASGLGIKLATGANALDTASAIRAELVKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + + I+ + + + +G Sbjct: 516 FNRMFDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAFLFVRLPSSFLPDEDQGVFLSM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + L+ + ++ + + E F V G +K Sbjct: 576 AQLPAGATQERTQKVLDEMTDYFLTKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWG 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 636 ERPGDENKVEAITQRASAAFSQIKDAMVFA 665 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + K+ Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTASAIRAELVKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 60.9 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|104780222|ref|YP_606720.1| preprotein translocase subunit SecD [Pseudomonas entomophila L48] gi|95109209|emb|CAK13906.1| preprotein translocase membrane subunit SecD [Pseudomonas entomophila L48] Length = 620 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 166/525 (31%), Positives = 271/525 (51%), Gaps = 41/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD D + +++Y E+++ L+KE + Sbjct: 106 NLAQTTPQWLRSLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERV 165 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q I L FAD +E + D + + Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFN--------DFDLTTTERNELAVLRLA 217 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F + K F G VE + I+G + A A+FD Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAAVERGLIITGDQVTDAQASFDEHG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+I D G TR N+G+ +AV+ + + Sbjct: 335 RPQVNIRLDGHGGELMSRATRTNVGRSMAVIFIEQKPVTRYVKQTVDGVEKEVAVQTFQE 394 Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+I +Y +G++A ++ N++L LAL+SLLGATLTLP IAG Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRGFGVLATIALAGNMVLLLALMSLLGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE SV ++ GF+RAYS I D+N+T L+ +LF Sbjct: 515 IVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G G V+GFA+TM L I SMFTA+ + RA++ + +K + Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKLW 619 Score = 137 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 88/250 (35%), Gaps = 5/250 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V + + + ++ L G + + + Sbjct: 372 VTRYVKQTVDGVEKEVAVQTFQEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I ++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-GFGVLATIALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ + +S + I Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820 + N V ++ + + G + FA+ M+ GI + +++ + ++ Sbjct: 548 HEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVN 607 Query: 821 LFIYDWRAKN 830 L K Sbjct: 608 LTCGGRDIKK 617 Score = 41.2 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 32/121 (26%), Gaps = 17/121 (14%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W +L ++ +G + + PN P + A +S + D Sbjct: 4 KYPLWKYLLIVVVLAVGFIYSAPNLYPDDPAVQISGASSALHVS-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117 D L ++G + + ++++ A + Sbjct: 51 LDRVTKALTDAGITVKGGSLGEKGSALVRLTNQEDQLPAKDVARKALGDDYVVALNLAQT 110 Query: 118 F 118 Sbjct: 111 T 111 >gi|114046586|ref|YP_737136.1| preprotein translocase subunit SecD [Shewanella sp. MR-7] gi|113888028|gb|ABI42079.1| protein-export membrane protein SecD [Shewanella sp. MR-7] Length = 624 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 163/532 (30%), Positives = 276/532 (51%), Gaps = 35/532 (6%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 + +++ P L +++ PS + I LGLDLRGG +L+VD Sbjct: 105 TLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQAG 164 Query: 72 MYSDELRSFLKKEGIGVFSMRQI------QNKITLSFADSRFKENIADKVTLFLQGVNSK 125 + LR FL+++ I S+R +I ++F + T + + Sbjct: 165 ALVESLRQFLREQQIRGASVRIDSTRDDAGGQIAIAFN-------AVAESTNNARSTIRQ 217 Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185 +T + + + L+Q ++ + ++Q+++I+R RI+++GI+E+ +QR G Sbjct: 218 FMQQSCPTWQLTNADNGLVVKLAQEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQG 277 Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245 HRI I+LPG QDP+ + ++G TA ++F +V + L+D GN V Sbjct: 278 EHRIRIELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAQVLKDKSGNPVYVAR 332 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305 + G H+ A AN V+I D +G ++ E +R NIGKP+A Sbjct: 333 TPVLGGDHIVDARANIGEMGM-AEVNIHLDRIGGQKMSEFSRANIGKPMATSYSEYSRDE 391 Query: 306 P------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 Q+ + +I+G T + A LA +LRAGS+ + IVEER +G Sbjct: 392 QGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIG 451 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATL 412 LG+++I G A+ G+ + +LFM + Y + G VA+ ++ N+++ LL+L+ A L Sbjct: 452 PTLGAENIQNGFAALGLGMGITLLFMALWYRRLGWVANVALIANMVILFGLLALIPGAVL 511 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP IAG+VL +G+AVD+N+L+ ERI+++ ++ +S ++D GF A+STIFD+N T +I Sbjct: 512 TLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMI 571 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 VVL+ G G ++GFA+T+GL +L SMFT I RA++ + + + Sbjct: 572 TAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVR 623 Score = 122 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 93/260 (35%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G + + S + + + ++ L G Q Sbjct: 365 GQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 424 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I+ G + + L+++ + ++ Sbjct: 425 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALWYR-R 483 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R++ +K Sbjct: 484 LGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 543 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID + + I+ + + G I FA+ + G++ + Sbjct: 544 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 600 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + ++ +Y A+ Sbjct: 601 TGIFASRALINLVYGRDARR 620 >gi|146310603|ref|YP_001175677.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Enterobacter sp. 638] gi|145317479|gb|ABP59626.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Enterobacter sp. 638] Length = 1049 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 70/686 (10%), Positives = 177/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P V + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAV---------SITAVYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + K + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDKLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVIAAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + + Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + S Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPSGLKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSIFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGENKKGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D I + + I+ + + + +G Sbjct: 520 FDKSTNHYTDSIGGILRSTGRYLLLYIIIVVGMAFLFVRLPSSFLPDEDQGVFLTMAQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 580 AGASQERTQKVLDEVTDYYLTKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERSG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 DENKVEAITGRAMGTFSQIKDAMVFA 665 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKVELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T ++FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSIFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMNLMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G++ A Sbjct: 959 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMITATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|296536039|ref|ZP_06898178.1| protein-export membrane protein SecF [Roseomonas cervicalis ATCC 49957] gi|296263645|gb|EFH10131.1| protein-export membrane protein SecF [Roseomonas cervicalis ATCC 49957] Length = 318 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 142/307 (46%), Positives = 196/307 (63%), Gaps = 2/307 (0%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 F L+PD AI FM+ R G+ S L S+ SI L F GL GIDF+GGI + + Sbjct: 2 FLSRPLFRLVPDNTAIPFMKGRVLGLIFSALLSLLSIGLAFYPGLEKGIDFRGGIIMEIR 61 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 P +L+ +RS L +GD+ Q F L+RL Q GD A + ++ + E Sbjct: 62 TPGPANLAAIRSAASGLNLGDVGVQEFGDASTVLLRLPVQ-GDEAATQTAVNRIRGVLEE 120 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 P + + TE VG ++S EL + ++ + +S +AM+ YIW RF+W FA+GAI TL+L+ Sbjct: 121 AAPGARLLRTEAVGNRVSAELFQGSLIALGLSMLAMMAYIWFRFEWQFAVGAIATLLLET 180 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 TK +GF A+ IEF+LT VAAVLT+IG+S+NDKVVVYDRMR+N++ Y ++ R LIDKS Sbjct: 181 TKLVGFLAVTRIEFSLTTVAAVLTIIGFSINDKVVVYDRMRENLRKY-KTMPLRQLIDKS 239 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 INETL R+V TS+ +S LP+A++GG + FA M FGIV + SSSIFIAAPILLF+ Sbjct: 240 INETLNRTVGTSLTLLLSSLPLALFGGDALSGFAWTMLFGIVASTSSSIFIAAPILLFLG 299 Query: 825 DWRAKNA 831 + R + Sbjct: 300 ENRLRRN 306 >gi|117623550|ref|YP_852463.1| acriflavine resistance protein B [Escherichia coli APEC O1] gi|115512674|gb|ABJ00749.1| acriflavine resistance protein B [Escherichia coli APEC O1] Length = 1035 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------VSATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 Q R + + L+ + + ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.4 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 42.0 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYD 825 + + Sbjct: 1020 FVLVKR 1025 >gi|291618351|ref|YP_003521093.1| AcrD [Pantoea ananatis LMG 20103] gi|291153381|gb|ADD77965.1| AcrD [Pantoea ananatis LMG 20103] Length = 1066 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 70/689 (10%), Positives = 186/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L + ++++P P ++ + Sbjct: 36 RPIFAWVLAILLCLCGTLAII-----SLPVEQYPDLAPP-------------NVRITATY 77 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +ITL+F + +V Sbjct: 78 PGASAQTLENTVTQVIEQNMTGIDNLMYMSSNSSNTGQAQITLTFTAGTNPDEARQQVQN 137 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L + + + +I++ + + + + + + Sbjct: 138 QLQSALRQLPQPVQSQGVTVNKTGDSNILMVAFVSTDGSMNKQDIADYVASNIQEPLSRI 197 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L TT + N G ++ Sbjct: 198 DGVGEVDAYGTQ-YAMRIWLDPYKLTAYALTTDDVVNAIKSQNTQVAVGQVGGLPAVNNQ 256 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 257 ALNATVNAQAML-------------QTPDQFKAITLKNNPDGSVVTLGDVATVALGAEKY 303 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L + Sbjct: 304 DSLSRYNGQSASGLGIKLASGANEMNTDKLVRARLDELSHYFPHGLEAKIAYETTPFVKA 363 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV V+++ + + L+ ++ + ++ T ++ G ++ ++ Sbjct: 364 SITDVVKTLLEAILLVFGVMYLFMQNFRATLIPTIAVPVVLLGTFCVIFAFGYSINTLTM 423 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 424 FAMVLAIGLLVDDAIVVVENVERIMSEEGISPRAATRKSMGQIQGALVGIALVLSAVFIP 483 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ ++++S+ A+ + A+ + + Sbjct: 484 MAFFGGTVGAIYRQFSVTIVSAMILSVLVAMILTPALCATLLKPIAKGEHHGERGFFRWF 543 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + +A W + + I + L + +G I V Sbjct: 544 NHHFNRNADRYQRGVAHILRTGGRWLLLYVGIIGIMAFLFLHLPSSFLPREDRGMILTQV 603 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ + + ++ ++ + + F G+ R+ +K Sbjct: 604 QLPAGSSMNQTSAVVAKVEKYYLTKEKDNVLSVFSTIGSGPGGNGQNVARLFIRLKDWGD 663 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 T K + + ++ Sbjct: 664 RPGADRTSFAIIKRAGKAFKHINEATVIA 692 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + + +++ +++ P Sbjct: 288 VTLGDVATVALGAEKYDSLSRYNGQSASGLGIKLASGANEMNTDKLVRARLDELSHYFPH 347 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 348 GLEAKIAYETTPFVKASITDVVKTLLEAILLVFGVMYLFMQNFRATLIPTIAVPVVLLGT 407 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + IS R KS+ + Sbjct: 408 FCVIFAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGISPRAATRKSMGQ 465 Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +G G++ F++ + ++++ ++ + + + Sbjct: 466 IQGALVGIALVLSAVFIPMAFFGGTVGAIYRQFSVTIVSAMILSVLVAMILTPALCATLL 525 Query: 825 D 825 Sbjct: 526 K 526 Score = 71.3 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 57/543 (10%), Positives = 142/543 (26%), Gaps = 42/543 (7%) Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV--- 381 I N +R + G++ I+ F+ + Sbjct: 528 IAKGEHHGERGFFRWFNHHFNRNADRYQRGVAHILRTGGRWLLLYVGIIGIMAFLFLHLP 587 Query: 382 --------LYGKWGLVADFSIFLNVILTLAL-----LSLLGATLTLPSIAGIVLGIGLAV 428 V + + + L + S+ + Sbjct: 588 SSFLPREDRGMILTQVQLPAGSSMNQTSAVVAKVEKYYLTKEKDNVLSVFSTIGSGPGGN 647 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 N+ ++ + RA N +IA+ G G+ GF Sbjct: 648 GQNVARLFIRLKDWGDRPGADRTSFAIIKRAGKAFKHINEATVIASSPPAITGLGSSSGF 707 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548 + I + AM ++ + + I + Sbjct: 708 DL----EIQDHGGIGHDKLMAMRDMLLDKASKDKLLSRVRHNGLDDSPQLQIDIDERKAQ 763 Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV--------------DLSVV 594 +G+S+ ++ + +G ++ + + S Sbjct: 764 ALGVSLDTINDTLATAWGSSYVNDFLDRGRVKKVYVQADAPYRMLPGDVDKWYVRNSSGT 823 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 + + E+ G++ + + + L Sbjct: 824 MVPFSAFATSRWQTGSPRLERYNGYSSLEIVGEAAEGVSSGTAMNEMEKLVESLPLGVGF 883 Query: 655 EIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712 + G L + ++S + + + + ++ W + + L + L Sbjct: 884 QWTGASYQERLSGSQAPALYVVSLLVVFLCLAALYESWSIPFSVMLVVPLGVIGALIATW 943 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 G+E ++ +LT++G S + +++ + + L + + + + L Sbjct: 944 TRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---LNSKGGELIESTLAASRQRLRPI 1000 Query: 773 VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + TS+A VLPMA+ G S + G++ A +I + + Sbjct: 1001 LMTSLAFIFGVLPMAISSGAGSGSQHSVGTGVMGGMISATILAILFVPLFFVLVRRRFPL 1060 Query: 830 NAR 832 + Sbjct: 1061 KEK 1063 >gi|238799347|ref|ZP_04642786.1| Acriflavine resistance protein B [Yersinia mollaretii ATCC 43969] gi|238716797|gb|EEQ08674.1| Acriflavine resistance protein B [Yersinia mollaretii ATCC 43969] Length = 1039 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 69/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIIMCLTGALAI-----STLPIEQYPNLAPP-------------NVRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S ITL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTDPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + ++++ + + + D + Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT + N+ G D+ Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDVVTAIQSQNSQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T A L + Sbjct: 276 DYLSRFNGQAASGMSVKLASGANELQTDALVKARLAELAPFFPHGLEAKIAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSVFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + + + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + A+ +K I Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIKPGHHHAKRG 510 Query: 534 IPDCIAIQFMRARFWG 549 F R+ Sbjct: 511 FFGWFNRMFDRSAHRY 526 Score = 85.9 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 53/482 (10%), Positives = 140/482 (29%), Gaps = 25/482 (5%) Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 + G + I I Y + L + S+ G+ Sbjct: 13 WVLAIIMCLTGALAISTLPIEQYPNLAPPNVRISASYPGASAQTLENTVTQVIEQSMTGL 72 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 + ++ S+ + I + ++ ++ S I V + Sbjct: 73 DNLLYMSSQSSNSGSASITLTFQAGTDPNEAMQQVQNQLQSAIKKLPQDVQQQGVSVSKS 132 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G + A + A + + + R + + SID I Sbjct: 133 GDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRIEGVGSIDAFGSQYAMRIWLDPNK 192 Query: 541 ----------------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 G + + + ++ + Sbjct: 193 LNNYQLTTQDVVTAIQSQNSQIAVGQLGGTPSVDNQALNATINAQSQLQTPEQFREITLR 252 Query: 585 ANRP---VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 N+ V L V + D + + + + + +++ + Sbjct: 253 VNQDGSLVTLGDVAKIELGAEKYDYLSRFNGQAASGMSVKLASGANELQTDALVKARLAE 312 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700 + P + I+ + ++ + + + + +++ + + L + Sbjct: 313 LAPFFPHGLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAV 372 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + + T ++FG N + A++ IG V+D +VV + + + + R+ Sbjct: 373 PVVLLGTFAILSVFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREA 430 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817 KS+ + G V ++ +PMA +GG+ F+I + +V++ ++ + Sbjct: 431 TRKSMGQIQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTP 490 Query: 818 PI 819 + Sbjct: 491 AL 492 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 66/177 (37%), Gaps = 8/177 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + + ++ + L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNSKGKDLVEATLEASRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + TS+A VLPM + G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMTISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLV 1026 >gi|218660141|ref|ZP_03516071.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium etli IE4771] Length = 314 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 172/317 (54%), Positives = 237/317 (74%), Gaps = 3/317 (0%) Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551 M L ++ISMFT+++ VR MI I R +K K ++I PL F P IQFM+ARF+GV Sbjct: 1 MALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFS--PYDKHIQFMKARFFGVT 58 Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611 +S L SI S+ L GLNYG+DF+GGIQ+ V DL+ R L+SL +G+I+ Q+F Sbjct: 59 VSALLSIASVALFIYPGLNYGVDFRGGIQMSVKTQGTADLAKFREGLDSLGLGEITLQSF 118 Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 G + LVR Q Q G AQT + +K ++ +I P +T++ T+++GPK+S EL GI+ Sbjct: 119 GGNNSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPKVSGELASAGIL 178 Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731 V+I+++AMLIYIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNLTA+AA+LTL+G Sbjct: 179 SVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAILTLVG 238 Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791 YSVNDKVVVYDRMR+NM+LY S+ R++IDKSINETL RS+YT+ AF++++PMA+WGG Sbjct: 239 YSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAFLALVPMAIWGG 297 Query: 792 SVIGSFAIPMAFGIVVA 808 S + SFAIPM FGI+VA Sbjct: 298 SAVSSFAIPMVFGILVA 314 >gi|124265471|ref|YP_001019475.1| preprotein translocase subunit SecF [Methylibium petroleiphilum PM1] gi|124258246|gb|ABM93240.1| protein translocase subunit secF [Methylibium petroleiphilum PM1] Length = 344 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 96/327 (29%), Positives = 160/327 (48%), Gaps = 26/327 (7%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FM+ +S + ++ L T GL+ I+F GG L V + D Sbjct: 1 MEFFRIKRDIPFMKHALIFNVVSFVTFAAAVFFLVTRGLHLSIEFTGGTVLEVEYAKTAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VRS +E+L G++ QNF ++ LVRL + + E ++ Sbjct: 61 VPKVRSAVEALGFGEVQVQNFGTSRDVLVRLPLRGDVKQQEVVGRVFSALCAAEGGQVTQ 120 Query: 651 IQ-------------------------NTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 Q +E VGP++ +EL G + + I ++IY+ Sbjct: 121 SQSVSDKGESVSAQVCDAGGAQPVMLKRSEFVGPQVGKELATDGAMALGFVVIGIMIYLA 180 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 IRF+W FA+ AI + D+ LGFFA F EF+L+ +AAVL ++GYSVN+ VV++DR+R Sbjct: 181 IRFEWKFAVAAIVANLHDVIIILGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIR 240 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805 + + Y ++ +ID +I T+ R++ T + + VL M V+GG+ + FA+ + GI Sbjct: 241 EAFRRYRK-MNTHQVIDHAITSTMSRTIITHGSTQMMVLSMLVFGGATLHYFAVALTIGI 299 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + SS+F+AA I +++ R + Sbjct: 300 LFGIYSSVFVAAAIAMWLGVKREDLMK 326 >gi|327393533|dbj|BAK10955.1| acriflavine resistance protein B AcrB [Pantoea ananatis AJ13355] Length = 1053 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 74/686 (10%), Positives = 191/686 (27%), Gaps = 42/686 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ I G+L + ++P P + Sbjct: 8 RRPVFAWVIALCIMLFGILSI-----RSLPVAQYPDVAPP---------QISIQATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK--ITLSFADSRFKENIADKVTLFL 119 + + + ++ + L + + I ++F + +V + Sbjct: 54 SAETLESSVTQVIEQQLTGLDGLLYFSSTSTASTGQVKINVTFKQGTDPDIAQVQVQNKV 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 Q S+L + + +++ S A + + ++ D + Sbjct: 114 QQAESRLPSAVTSQGVTVQKAQSDFLLILAVYDKSNKSSASDVADYMVSNMEDTLARVTG 173 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 + DPS+L + ++ N G + ++ Sbjct: 174 VGNVQVFGA-EYAMRIWLDPSKLASYSLMPSDVTTALESQNTQVSSGQLGAQPSSNTQQL 232 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 V + + + + + + Sbjct: 233 VATVRSRSRL-------------QTPEQFRNIVLKSQADGSVVRLSDVARVEMGDEDYSA 279 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + + T E R+ + S Sbjct: 280 NVMANGHPASGMAIQLASGANALSTAEKVKSTIDEFRSSMPAGYEIAYPLDSTDFVKISI 339 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 T LV+IV+F+ + + L+ ++ + ++ T +LS G ++ ++ G Sbjct: 340 EEVVKTLVEAVILVVIVMFVFLQNIRTTLIPTIAVPVVLLGTFGVLSFFGYSINTLTMFG 399 Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 +VL IGL VD I+V E + + + + + + + + Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMREEGLPPREATEKSMREITGALVGIALVLSAVFLPMT 459 Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535 FF G R F+IT+ S+++S+ A+++ A+ +++ S F Sbjct: 460 FFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLLKPHNHDSGRNGFFGWFNQRY 519 Query: 536 DCIAIQF--------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + ++ R+ + + +L C++ + + +G I + Sbjct: 520 ENVQARYQRGVGKVMHRSVRYLLLYGVLLIGCAVLYMRLPTGFLPTEDQGYIMVQYQLAP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + R +Q + + + + LV G+ +K Sbjct: 580 GATENRTREVRRQVQQYFATQEKDNVNVSMLVDGFSFAGNGQNAGVGFISLKNWRDRKGS 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673 ++ + I + Sbjct: 640 ENSADAIAGRAMAALSRIRDAQIFVL 665 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V LS V + + + + ++++ ++ + +P Sbjct: 262 VRLSDVARVEMGDEDYSANVMANGHPASGMAIQLASGANALSTAEKVKSTIDEFRSSMPA 321 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + I + + ++ + I ++I +++ + L + + + T Sbjct: 322 GYEIAYPLDSTDFVKISIEEVVKTLVEAVILVVIVMFVFLQNIRTTLIPTIAVPVVLLGT 381 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G + FG N + ++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 382 FGVLSFFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMREEGLPPREATEKSMRE 439 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ LPM + GS F+I + +V++ ++ + + + Sbjct: 440 ITGALVGIALVLSAVFLPMTFFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLL 499 Query: 825 D 825 Sbjct: 500 K 500 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 8/206 (3%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY 683 G + + + L G +L + + IS I + + Sbjct: 830 QGSAAEGKSSGDAITAMEKLAATLPAGTTFAWSGLSYQEKLSGNQALSLYGISLIVVFLC 889 Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 + ++ W L + + L + +L L G+E ++ A+LT+IG S + +++ + Sbjct: 890 LAALYESWAVPLSVMLVVPLGVIGSLLAITLRGLENDVYFQVALLTIIGLSSKNAILIVE 949 Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799 + Y S + + L + TS+A VLP+A+ G + + Sbjct: 950 FAEE---HYRKGESLINAAVHAATMRLRPIIMTSLAFTAGVLPLAISTGAGANSRIAIGT 1006 Query: 800 PMAFGIVVAASSSIFIAAPILLFIYD 825 + G + A +IF + + Sbjct: 1007 GIIGGTLTATLLAIFFVPLFFVLVRR 1032 >gi|299768952|ref|YP_003730978.1| AcrB protein [Acinetobacter sp. DR1] gi|298699040|gb|ADI89605.1| AcrB protein [Acinetobacter sp. DR1] Length = 1058 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 66/554 (11%), Positives = 154/554 (27%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGIDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNTLSDSDIKDYVNSSIKEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N+ G Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTNYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A LR + + Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTADAVEHRLAELRKNYPTGLADKLAYDTTPFIRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + ++ + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATSRSMQQISGALIGITSVLTAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A++ A+ I++ N + F Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 M + Sbjct: 516 RGFNNGFDRMSHSY 529 Score = 80.9 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 83/248 (33%), Gaps = 8/248 (3%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + L +++ +E ++ + P Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAGGLAIKIATGANALDTADAVEHRLAELRKNYPT 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 R I + +I + I + I +++ + W + + + + T Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +FG N + A++ IG V+D +VV + + + +S+ + Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATSRSMQQ 437 Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823 G + TS+ +PMA +GG VI F+I + +V++ ++ + I Sbjct: 438 ISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496 Query: 824 YDWRAKNA 831 N Sbjct: 497 LKQHDPNK 504 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 75/232 (32%), Gaps = 17/232 (7%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-- 672 + ++I +P +Q + +S E G Sbjct: 821 NGVSSVNIQGTPAPGVSSGDSMKAMEEIIAKLPSMGLQGFDYEWTGLSLEERESGAQAPF 880 Query: 673 -VIISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALF-----GIEFNLTAV 723 +S + + + + ++ F++ + L + L + + + N+ Sbjct: 881 LYALSLLIVFLCLAALYESWSIPFSVLLVVPLGIIGAIVLTYLGMIIKGDPNLSNNIYFQ 940 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 A++ +IG S + +++ + ++ L + + L + T++A V Sbjct: 941 VAMIAVIGLSAKNAILIVEFAKE---LQEKGEDLLEATLHASKMRLRPIIMTTLAFGFGV 997 Query: 784 LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 LP+A+ G S + G++ A IF ++I + Sbjct: 998 LPLALSTGAGAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSIFKYKPK 1049 >gi|288942522|ref|YP_003444762.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Allochromatium vinosum DSM 180] gi|288897894|gb|ADC63730.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Allochromatium vinosum DSM 180] Length = 1047 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 79/682 (11%), Positives = 181/682 (26%), Gaps = 40/682 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I GLL + ++PS P Sbjct: 8 RPVFAWVIAIVIMLAGLLSI-----RILPVSQYPSIAPPAI---------AISATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L + + ITL+F + + +V LQ Sbjct: 54 AQTVEDSVTQVIEQQMNGLDGLRYMSSTSESNGLSTITLTFENGVDPDVAQMQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 N+ L + + + +++ + D I Sbjct: 114 ANALLPEEVVRQGIQVAKSVRNFLMVVAFVSRDGSLTNADLGDYAASLVKDPISRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP+RL Q T + + N G Sbjct: 174 EITLFEAQ-YAMRIWLDPNRLNQYGLTPSDVVAAIEAENAQVSAGQLGAIPSPQGQQLNV 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + + I Sbjct: 233 TVNVQSRL-------------NTPDEFGAIRLRTQADGSTVHLRDVARIELGSESYGKMA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T + L A P + S Sbjct: 280 RHNGSPAAGMAIRLATGANALQTADAVKAKITELSAFFPPGMEAVFPYDTTPFVRISIGE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G T+ ++ +V Sbjct: 340 VVKTIFEAVILVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGILAAFGFTINTLTLFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + S + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEDGLPPKEATRKSMDQITSALVGIALVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG R F+IT+ ++L+S+ A+++ A+ +++ Sbjct: 460 GGSTGVIYRQFSITIVSAMLLSVVVALTLSPALAASLLKPMPHGPRRGFFGWFNRNFERS 519 Query: 538 IAIQ------FMRARFWGVGISILFSICSICL-LFTHGLNYGIDFKGGIQLGVLANRPVD 590 +++ R R+ +G+ ++ + L + +G + + Sbjct: 520 VSVYGKSVAGITRRRWIFLGVYLILVGALVVLHERMTTSFLPDEDQGILIIQATLPSGAT 579 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L R L+ ++ + + ++ V G ++ P Sbjct: 580 LERTREVLKQVEKHFLENEKEAVKELITVSGFSFAGQGQNMAIGFVKLRDWSERQRPDLH 639 Query: 651 IQNTEIVGPKISRELIRKGIVG 672 ++ + + Sbjct: 640 VKAVAGRAMMAFSRIRDARVFA 661 Score = 82.8 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 98/283 (34%), Gaps = 6/283 (2%) Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606 G S ++ + LN +F V L V + Sbjct: 218 QLGAIPSPQGQQLNVTVNVQSRLNTPDEFGAIRLRTQADGSTVHLRDVARIELGSESYGK 277 Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666 ++ + +++ ++ +++ P R I Sbjct: 278 MARHNGSPAAGMAIRLATGANALQTADAVKAKITELSAFFPPGMEAVFPYDTTPFVRISI 337 Query: 667 RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 + + + + I + + +++ + + L + + + T G A FG N + A Sbjct: 338 GEVVKTIFEAVILVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGILAAFGFTINTLTLFA 397 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 ++ IG V+D +VV + + ++ + ++ KS+++ V ++ +P Sbjct: 398 MVLAIGLLVDDAIVVVENV--ERVMHEDGLPPKEATRKSMDQITSALVGIALVLSAVFVP 455 Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 MA +GGS F+I + ++++ ++ ++ + + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMLLSVVVALTLSPALAASLLK 498 Score = 51.2 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 52/163 (31%), Gaps = 11/163 (6%) Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG--IEFNLTAVAAV 726 + + + + L + W L++ I A G + ++ + Sbjct: 870 ALYALS-ALVVFLALAALYESWSVPFA--VMLVVPIGVLGAVVAALGRGLPSDIYFQVGL 926 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 L IG S + +++ + + L ++ + V TS+A VLP+ Sbjct: 927 LATIGLSAKNAILIVEFAK---TLQEEGRDALSAALEAARMRIRPIVMTSLAFGFGVLPL 983 Query: 787 AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 A+ G + + G+V A + + I Sbjct: 984 ALGTGAGSGGQNAIGTGVLGGVVAATMLGVLFVPLFFVLIRGR 1026 >gi|77460839|ref|YP_350346.1| preprotein translocase subunit SecF [Pseudomonas fluorescens Pf0-1] gi|77384842|gb|ABA76355.1| protein-export membrane protein SecF [Pseudomonas fluorescens Pf0-1] Length = 304 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 163/286 (56%), Gaps = 5/286 (1%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 I FM R + G+++ ++ +I +F G+N+G+DF GG + + RP D++ VR Sbjct: 3 RTINFMGVRNFAFGVTVFLTLLAIFSVFHKGMNWGLDFTGGTLIELTYERPADVTKVREQ 62 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + + QNF + LVR+ + Q +T++ E V Sbjct: 63 LVTSGYHEAVVQNFGATTDLLVRMPGEDPQLGHQVAEALQRV----GGDNPATVKRVEFV 118 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 GP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ T+G + F I Sbjct: 119 GPQVGEELRDQGGLGMLLALGGILIYLAFRFQWKFAVGAIVSLIHDVIVTIGILSFFQIT 178 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ S + I+ S +TL R++ TS+ Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ASLIENINISTTQTLLRTMATSI 237 Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + +++ + +GG + F+I + G++ SSI+IA +L+++ Sbjct: 238 STLLAIAALLFFGGDNLFGFSIALFIGVLAGTYSSIYIANVVLIWL 283 >gi|260549288|ref|ZP_05823508.1| AdeE protein [Acinetobacter sp. RUH2624] gi|260407694|gb|EEX01167.1| AdeE protein [Acinetobacter sp. RUH2624] Length = 1037 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 81/645 (12%), Positives = 191/645 (29%), Gaps = 47/645 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I +G + L ++++P P G ++ + Sbjct: 9 RPIFAWVLSICIMALGTISIL-----TLPIEQYPDIAPP-----------GVNVT--ANY 50 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ L +K S Q +I+LSF + +V Sbjct: 51 PGASAKTVEDSVSQILEQQIKGIDGLLYFSSSSSSAGQARISLSFNQKTNPDTAQVQVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + S+L + ++ + T + S+++ + +++ S ++ D + Sbjct: 111 AVNQALSRLPQEVQQQGITVTKSQGDSLLVFALYDESNTRTSVDISDYMVSTLQDPLSRV 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L + + N G RD Sbjct: 171 DGVGEITVFGAQ-YAMRIWLDPHKLNSYGLMPSDVRTAIEAQNAQITAGELGALPTRDGQ 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + ++ I + + + Sbjct: 230 ALNATVTALSRL-------------QTVNQFENIILRTQTNGAVVLLKDVARVERGAENY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + + + T E L + Sbjct: 277 QTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTGSMPSGLKVAYPRDSTPFVEA 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T A LV+IV+F+ + + L+ ++ + ++ T +LS+LG ++ ++ Sbjct: 337 SVKGVIKTLAEAIVLVVIVMFLFLQSWRATLIPAIAVPVVLLGTFGVLSILGYSINTLTL 396 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + ++ + + + + + Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMHEQHIDARQATLISMKEISGALVGIAMVLAAVFLP 456 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F++T+ ++++S A+++ A+ +++ K + F Sbjct: 457 MAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLLKPANEKQKQRKFFTWFNR 516 Query: 534 IPDCIAIQFMRA------RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + + I L + +T + + + V + Sbjct: 517 KVEQGQSSYRIKLLAVLGKPKIFMIIFLGITALLGWQYTRMNTGFLPQEDQGSVMVQFST 576 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 PV ++ + I D N + + + Q Sbjct: 577 PVGTTLAETERVGNLIADYFLTKEKDNLNVIFMVMGRNNAGSGQN 621 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 92/248 (37%), Gaps = 6/248 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + S + + + +++ ++ ++T +P Sbjct: 261 VLLKDVARVERGAENYQTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTGSMPS 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707 ++ I + + + ++I +++ W L + + + T Sbjct: 321 GLKVAYPRDSTPFVEASVKGVIKTLAEAIVLVVIVMFLFLQSWRATLIPAIAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ++ G N + A++ IG V+D +VV + + ++ I R S+ E Sbjct: 381 FGVLSILGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERVMHEQHIDARQATLISMKE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M LPMA +GGSV F++ + +V++A ++ ++ + + Sbjct: 439 ISGALVGIAMVLAAVFLPMAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLL 498 Query: 825 DWRAKNAR 832 + + Sbjct: 499 KPANEKQK 506 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 8/212 (3%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIISAIAML 681 Q S A K+ E+V N + G +L + I + S I + Sbjct: 822 IQIQGSAATGESSGGAMDKMQELVDQQQGFNLQWSGLSYQEKLAGGQTIWLYLASIIFIF 881 Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 + + ++ W + + + L + + +L G ++ A+LT IG S + +++ Sbjct: 882 LCLAALYESWSIPVSVMLVIPLGLIGAVMAASLAGFVNDIYFQVAMLTTIGLSAKNAILI 941 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797 + + + I + + L + TS+A VLP+AV G Sbjct: 942 VEFA---AAKLEAGQALMEAIIEGAGQRLRPIIMTSLAFVAGVLPLAVSTGAGAVSRKEI 998 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 I + G++ SIF L + K Sbjct: 999 GIAVTGGMISGTLLSIFFVPLFFLLVRRLTNK 1030 >gi|313891645|ref|ZP_07825252.1| export membrane protein SecF [Dialister microaerophilus UPII 345-E] gi|313119923|gb|EFR43108.1| export membrane protein SecF [Dialister microaerophilus UPII 345-E] Length = 293 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 80/290 (27%), Positives = 143/290 (49%), Gaps = 1/290 (0%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 ++ IS + I S +F N+GIDF GG L + + V + VR Sbjct: 1 MSNFNVIKHSKIWFTISGILVILSFIAIFMFKFNFGIDFTGGTILDLEFKQNVTVQQVRE 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + + + Q G+ + + + V + I + + ++ E Sbjct: 61 ELRNNDLETSTIQLL-GDGHEDSGKNVMIRTKNLSSEESQKVIENIKKGIGDVDVKRMET 119 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG I E+ ++ V S +AM+IY+ +RF+ A+ +I + DI LG FA+F + Sbjct: 120 VGAVIGSEVTENTLLNVGFSFLAMIIYMTVRFEHKIAISSIIAICHDILMVLGAFAIFHL 179 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 E + + +AAVLT++GYS+N+ VV++DR+R+N+ + + SF L + SI++T+ RS+YT Sbjct: 180 EVDASFLAAVLTVLGYSMNESVVIFDRIRENIHTHKRTDSFEKLANDSIHQTIHRSMYTL 239 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + + +GG +FA+ M G + A SS+ IA + + ++ Sbjct: 240 STVLFATGALYFFGGDTTKNFALVMLIGFISGAYSSVCIATSLWVKWHER 289 >gi|323527226|ref|YP_004229379.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Burkholderia sp. CCGE1001] gi|323384228|gb|ADX56319.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia sp. CCGE1001] Length = 1064 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 66/571 (11%), Positives = 152/571 (26%), Gaps = 38/571 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+ + ++P+ P Sbjct: 8 RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPAVQ---------ISATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 V + ++ S L + ITL+FA + +V LQ Sbjct: 54 AKTVENTVTQVIEQSMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L ++ T +++ + + + + + D + + Sbjct: 114 ATPLLPQAVQQLGTKVTKSSSSFLMVMAFVSEDGSMNKYDLANYVASNVQDPVSRIDGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + D ++L T + N G G Q Sbjct: 174 TVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVQSALQAQNVQVAGGSLGGTPSVPGQVLQA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + + + Sbjct: 233 TITEATLL-------------NTPEQFGNVLLKVNPDGSQVRIKDVARVELGGENYNFDT 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T + L + S Sbjct: 280 KYNGQPTAGFGIQLATGANALATAKAVRAKIDELSKYFPHGLVVKYPYDTTPFVRLSIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A++S++G ++ S+ G+V Sbjct: 340 VVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVMSVVGFSINTLSMFGLV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + V + F Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREATRKAMDQITGALVGVALVLSAVFVPVAFS 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG R F++T+ ++++S+ A+ + A+ I +K I Sbjct: 460 GGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKGFFGW 514 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHG 568 F ++R S L + Sbjct: 515 FNRTFNKSRDRYHSGVHHVIKRSGRWLIIYM 545 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V + + + +++A + + ++++ Sbjct: 258 SQVRIKDVARVELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRAKIDELSKYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + R I + + ++ + + + +++ + L + + + Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T ++ G N ++ ++ IG V+D +VV + + + +S R+ K++ Sbjct: 378 GTFAVMSVVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G V ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 79/247 (31%), Gaps = 8/247 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G + ++G ++ PG S Q Sbjct: 790 VRNTGGSMVPFSSFASGEWAYGSPKLERYNGISAVEIQGAAAPGKSTGQAMSAMEALVAK 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + + +++ + + + W I + L Sbjct: 850 LPAGIGYEWTGLSLQERQSGSQAPILYGISILVVFLCLA---ALYESWSIPFSVIMVVPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L L G+E ++ +LT +G S + +++ + R+ + + Sbjct: 907 GVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARE--LQQGEGMGPIEAAL 964 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A + V+P+A+ G + + + G++ A +IF+ Sbjct: 965 EAARLRLRPILMTSLAFILGVMPLAISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMF 1024 Query: 820 LLFIYDW 826 + I Sbjct: 1025 FVVIRAK 1031 Score = 55.5 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 67/520 (12%), Positives = 136/520 (26%), Gaps = 28/520 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I +I +GLL + P L G + Sbjct: 536 RSGRWLIIYMVVIVAVGLLFV------RLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + L + S G Q + + D +++ KV + Sbjct: 590 LKDVSDYLLNSEKAIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHGDQKVQALVGR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L+ I + + D + + + + + + Sbjct: 650 LFMHFGSYKNA-LVYPVNPPSIPELGTAAGFDFELQDRAGVGHAKLMEARNMLLGMAAKD 708 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 L R Q + +S + S V D+DG Sbjct: 709 PTLAQVRPNGLNDTPQFKVNIDHEKAAALGVSLSAIDQTFSIAWASQYVNNFLDTDGRI- 767 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 KV + G + G + + R Sbjct: 768 ---KKVYMQGDAPFRMKPEDLSAWY-------VRNTGGSMVPFSSFASGEWAYGSPKLER 817 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + +G ++A + ++ER G S Sbjct: 818 YNGISAVEIQGAAAPGKSTGQAMSAMEALVAKLPAGIGYEWTGLSLQERQSG------SQ 871 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 I +V + L + + L VI L +L G + G++ Sbjct: 872 APILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 +GL+ + IL+ E RE + + + I +++ ++ + L Sbjct: 932 TTVGLSAKNAILIVEFARELQQGEGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAIS 991 Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 G + + +L + F AI ++ + I Sbjct: 992 NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 >gi|308049012|ref|YP_003912578.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799] gi|307631202|gb|ADN75504.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799] Length = 1047 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 72/637 (11%), Positives = 176/637 (27%), Gaps = 43/637 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + ++ ++ GL+ + L +P+ P Sbjct: 9 KRPVLASVISLLLIAFGLVA-----FDKLPLREYPNIDPPVV---------DISTSYRGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + ++ + R ++ +TL F R + A+ V + Sbjct: 55 SAAVVETKITRVIEDRVAGVEGIRNISSTSRDGRSSVTLEFNVGRDIDAAANDVRDRISR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 V L + + + I+ D ++ + R +D+ + + Sbjct: 115 VLDNLPEEADPPEVQKASGSSEVIMWLNLVSD--RMDTLQLTDYARRYLVDRFSVIDGVA 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + D +L T + N + S Q Sbjct: 173 NVRVGGGKVYAVRVWVDRQKLASRGLTVTDIEDALRADNVELPAGSIESQSRLFSVRVQ- 231 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + Sbjct: 232 ------------------RSFIHPDDFAKLVIGSGPDGYLIRLADVAQVELDTEEERIAF 273 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + ++ + E L L + S Sbjct: 274 RGNLQDMIGLGVTRQSTANTLEVAEQVHQLVDELNKSLPAGMEIKRSYDSSVFIQASIDE 333 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T I LV++V+++ + + L+ ++ +++I T +L LG ++ L ++ ++ Sbjct: 334 VYRTLFIAMALVVVVIYLFLGSVRAMLIPAVTVPVSLIGTFIVLYALGFSINLLTLLAMI 393 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IG+ VD I++ E I + + + +G + I + + + + F Sbjct: 394 LAIGMVVDDAIVMLENIHSRIEQGEPPLKAAFLGARQVGFAIVATTAVLVAVFLPIGFLE 453 Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533 G R F+I M ++++S A+S+ M + ++ ID + Sbjct: 454 GDLGKLFREFSIAMSAAVILSSVVALSLSPMMGSKLLKPVENEPWLVRKIDAGVEWLKGI 513 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + R V + + +G + L V + Sbjct: 514 YRRALEAWIQRPVLVVVILIGALGGSGWLFSKLPSEFAPKEDRGSMFLIVNGPQGATYEF 573 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630 ++ ++ ++ + K L+R G + Sbjct: 574 MKPYMDEIEHRLMPLVEAGEIKRLLIRAPRGFGRTED 610 Score = 80.1 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 75/214 (35%), Gaps = 9/214 (4%) Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666 + Q+ G + ++++ + K + + + ++ + E+ Sbjct: 276 NLQDMIGLGVTRQSTANTLEVAEQVHQLVDELNKSLPAGMEIKRSYDSSVFIQASIDEVY 335 Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 R + + + + ++IY+ L T+ + + T G NL + A+ Sbjct: 336 RTLFIAM--ALVVVVIYL-FLGSVRAMLIPAVTVPVSLIGTFIVLYALGFSINLLTLLAM 392 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 + IG V+D +V+ + + + V T+ LP+ Sbjct: 393 ILAIGMVVDDAIVMLENIH---SRIEQGEPPLKAAFLGARQVGFAIVATTAVLVAVFLPI 449 Query: 787 AVWGGS---VIGSFAIPMAFGIVVAASSSIFIAA 817 G + F+I M+ +++++ ++ ++ Sbjct: 450 GFLEGDLGKLFREFSIAMSAAVILSSVVALSLSP 483 Score = 56.2 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 6/136 (4%) Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L + T+ L L N+ + ++ LIG + + +++ + +L Sbjct: 880 PLVIMLTVPLATFGALLGLYFTDQSLNIYSQIGIIMLIGLAAKNGILIVEFAN---QLRD 936 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809 + F I + L + T + +P+ + G + + GI++A Sbjct: 937 RGVPFEQAIIDAAAARLRPILMTGITTAAGAVPLVLASGAGAETRFVIGVVVLSGILLAT 996 Query: 810 SSSIFIAAPILLFIYD 825 ++ + + + Sbjct: 997 FFTLLVIPVVYGLLAR 1012 >gi|282899827|ref|ZP_06307789.1| protein-export membrane protein [Cylindrospermopsis raciborskii CS-505] gi|281195309|gb|EFA70244.1| protein-export membrane protein [Cylindrospermopsis raciborskii CS-505] Length = 318 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 87/311 (27%), Positives = 159/311 (51%), Gaps = 16/311 (5%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV------ 583 + I ++ + + I I L G+DF GG +L + Sbjct: 1 MRLHVNKWRNIWWVFSSVIIISGIISMVISWQIPTIKAPLRPGLDFIGGTRLQLVRDCKQ 60 Query: 584 --LANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKK 640 N+P+D++VVR + +G+ S Q + ++ + D+ + ++ + + Sbjct: 61 PGNCNQPIDINVVREVAKEQGLGESSIQLISDNGEQNGITIRTKNLDTDQRVKLQSALSQ 120 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 K+ P + VGP + REL R GI+ +I+S I + IY+ +RF+W +A+ AI L Sbjct: 121 KVGVFDP--QKNQIDDVGPTLGRELFRSGIIALIVSFIGITIYLAVRFQWDYAVFAIIAL 178 Query: 701 ILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 + DI T+G F++FG IE + + A+LT+ G+SVND VV+YDR+R+N+K I Sbjct: 179 LHDILITVGIFSIFGLVFGIEVDSLFIVALLTITGFSVNDTVVIYDRIRENIKTSPH-IP 237 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 ++D ++++TL RS+ T++ +S++ + ++GG + F++ + G SSIFIA Sbjct: 238 IDRIVDDAVDQTLSRSINTTLTTMLSLVAIFIFGGETLKYFSLALIIGFGAGVYSSIFIA 297 Query: 817 APILLFIYDWR 827 + +L + Sbjct: 298 STLLTLWRERS 308 >gi|283851335|ref|ZP_06368617.1| protein-export membrane protein SecF [Desulfovibrio sp. FW1012B] gi|283573285|gb|EFC21263.1| protein-export membrane protein SecF [Desulfovibrio sp. FW1012B] Length = 363 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 153/340 (45%), Gaps = 48/340 (14%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVDL 591 LI I F++ R IS + L G +G+DF GG+ + V + +D+ Sbjct: 5 LIKPGTNINFLKYRKLAYLISAAIIVAGFVSLAVKGGPRFGVDFAGGLSIQVRFAKALDV 64 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVPLST 650 + ++ + + ++ Q F ++ ++ +T R Sbjct: 65 ETITKAVDQVGLDNVVVQRFGQDEANEFLIRASDNGVNQETVRASVEAALAKNLPDSGYA 124 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF---------------------- 688 +Q E+VGPK+ +L K + + S + + IYI RF Sbjct: 125 VQRLEMVGPKVGADLRGKALEAIFYSVLLIAIYISGRFEQRWMAAGMMAAGLAGGIYLLK 184 Query: 689 ------------------------KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 + +ALGA+ + DI T+ F+L EF+LT VA Sbjct: 185 LAGASTVWLIAAAMCITLALCFVMRLKYALGAVVADLHDILVTVSIFSLLDKEFDLTIVA 244 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 A+LT++GYS+ND ++VYDR+R+ + ++ F +I+ S+NETL R++ T+ ++V Sbjct: 245 ALLTILGYSLNDTIIVYDRIREKNRAVGKALPFEQVINASVNETLSRTILTAGTTLLTVA 304 Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + GG+VI FA+ M GI+ SSIF+A+PILL + Sbjct: 305 CLYFLGGAVIHDFALAMLIGILAGTYSSIFVASPILLDLG 344 >gi|237730445|ref|ZP_04560926.1| AcrB protein [Citrobacter sp. 30_2] gi|226905984|gb|EEH91902.1| AcrB protein [Citrobacter sp. 30_2] Length = 1049 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 67/686 (9%), Positives = 175/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFQSGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + + Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + S Sbjct: 280 KFNGKPASGLGIKLATGANALDTANAIRDELKKMEPFFPSGLKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T A LV +V+++ + + L+ ++ + ++ T A+L++ G ++ ++ G+V Sbjct: 340 VVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAIFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + I+ + + + +G Sbjct: 520 FDKSTHHYTDSVGGILRSTGRYLALYLIIVVGMAYLFVRLPSSFLPDEDQGVFLSMAQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLDEMTDYYLTKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 KENKVEAITQRAMGAFSQIKDAMVFA 665 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + DI + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGKPASGLGIKLATGANALDTANAIRDELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A+FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAIFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.2 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 839 EAMAMMEQLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M Sbjct: 899 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G+V A Sbjct: 959 G--LIEATLDAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1016 Query: 811 SSI 813 +I Sbjct: 1017 LAI 1019 >gi|119713614|gb|ABL97665.1| protein-export membrane protein SecF [uncultured marine bacterium EB0_39H12] Length = 305 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 95/289 (32%), Positives = 153/289 (52%), Gaps = 4/289 (1%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 I F+ R + S +F I SI LNYG+DF GG + + ++S +R Sbjct: 1 MTFNIDFLAWRRIALIFSSVFLILSIGSWLFKDLNYGLDFTGGTLVELSYPDSANISEIR 60 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 L NF K L++L DS+ V + + ++ E Sbjct: 61 QTLVLGGFEGAQVANFGSSKEVLIKLPGTVSDSLGSEIVSLLSSSSL---DQEIDLRRIE 117 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP+I EL G ++I+ M++YI RF+ FA A+ LI D+ +G F+L Sbjct: 118 YVGPQIGSELRDDGGTAMLIALAFMMLYIAFRFQSMFAGAAVIALIHDVIVVIGIFSLIQ 177 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 IEF+LT +AA+L +IGYS+ND +VV DR+R+N++ + S ++I+ S+N+TLGR++ T Sbjct: 178 IEFDLTVLAALLAVIGYSLNDTIVVSDRIRENLRSMES-DSTHEIINTSLNQTLGRTLIT 236 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 S+ + + + GG +I +FA+ + FG++V SSI+IAA L+ + Sbjct: 237 SLTTLLVLFSLYFLGGELIKNFALALIFGVIVGTYSSIYIAANALIMMG 285 >gi|304413738|ref|ZP_07395182.1| preprotein translocase subunit SecF [Candidatus Regiella insecticola LSR1] gi|304283829|gb|EFL92223.1| preprotein translocase subunit SecF [Candidatus Regiella insecticola LSR1] Length = 336 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 92/313 (29%), Positives = 167/313 (53%), Gaps = 12/313 (3%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + L FMR G+S+L + +I ++ T G N+G+DF GG + V Sbjct: 6 NYTVEQLNYGRKVYDFMRWDSIAFGVSLLLLVAAILVMSTRGFNWGLDFTGGTVIEVNLE 65 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-----------QYQPGDSVAQTRVL 635 P +L +R +++ QNF ++ ++RL P Q Sbjct: 66 HPANLDKMRDSIQQAGFSTPVIQNFGSTRDVMIRLAPTLPAATAISTTMPTSGANQEIGN 125 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 +++ I +T++ E VGP + EL + G + ++I+ +++LIY+ RF+W ALG Sbjct: 126 KIITIINESIDKNATVKRIEFVGPSVGSELAQAGAMALLIALLSILIYVGFRFEWRLALG 185 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 A+ L D+ TLG +L IE +LT VA+++++IGYS+ND +VV DR+R+N + + Sbjct: 186 AVIALGHDVAITLGILSLCDIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKISRGT 245 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 S+ ++I+ S+ +TL R++ TS + VL + ++GG+++ F++ M G+ + SSI++ Sbjct: 246 SY-EIINISLTQTLSRTIMTSATTLVVVLMLYIFGGTMLQGFSLTMLIGVSIGTVSSIYV 304 Query: 816 AAPILLFIYDWRA 828 A+ + L + R Sbjct: 305 ASALALRLGVKRE 317 >gi|293610932|ref|ZP_06693231.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826584|gb|EFF84950.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 1058 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 66/554 (11%), Positives = 154/554 (27%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGIDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNSLSDSDIKDYVNSSIKEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N+ G Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T E + LR + + Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPTGLADKLAYDTTPFIRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + ++ + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATSRSMQQISGALIGITSVLTAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A++ A+ I++ N + F Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKAPSNNIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 M + Sbjct: 516 RGFNNGFDRMSHSY 529 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 83/248 (33%), Gaps = 8/248 (3%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + L +++ +E ++ + P Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPT 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 R I + +I + + + I +++ + W + + + + T Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +FG N + A++ IG V+D +VV + + + +S+ + Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATSRSMQQ 437 Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823 G + TS+ +PMA +GG VI F+I + +V++ ++ + I Sbjct: 438 ISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496 Query: 824 YDWRAKNA 831 N Sbjct: 497 LKQHDPNK 504 Score = 60.9 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 75/232 (32%), Gaps = 17/232 (7%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-- 672 + ++I +P +Q + +S E G Sbjct: 821 NGVSSVNIQGTPAPGVSSGDSMKAMEEIIAKLPSMGLQGFDYEWTGLSLEERESGAQAPF 880 Query: 673 -VIISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALF-----GIEFNLTAV 723 +S + + + + ++ F++ + L + L + + + N+ Sbjct: 881 LYALSLLIVFLCLAALYESWSIPFSVLLVVPLGIIGAIVLTYLGMIIKGDPNLSNNIYFQ 940 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 A++ +IG S + +++ + ++ L + + L + T++A V Sbjct: 941 VAMIAVIGLSAKNAILIVEFAKE---LQEKGEDLIEATLHAAKMRLRPIIMTTLAFGFGV 997 Query: 784 LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 LP+A+ G S + G++ A IF ++I + Sbjct: 998 LPLALSTGAGAGSQHSVGYGVLGGVLSATFLGIFFIPVFYVWIRSIFKYKPK 1049 >gi|307730862|ref|YP_003908086.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia sp. CCGE1003] gi|307585397|gb|ADN58795.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia sp. CCGE1003] Length = 1064 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 65/575 (11%), Positives = 154/575 (26%), Gaps = 46/575 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+ + ++P+ P + + Sbjct: 8 RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPA-------------VQISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 ++ + + + S + ITL+FA + +V Sbjct: 50 PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L ++ T +++ + + + + + D + Sbjct: 110 KLQLATPLLPQAVQQLGTKVTKSSSSFLLVMAFVSEDGSMNKYDLANYVASNVQDPVSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + D ++L T + N G G Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVETALQAQNVQVAGGSLGGTPSVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + + + + + + I Sbjct: 229 VLQATITEATLL-------------NTPEQFGNVLLKVNQDGSQVRIKDVARIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + L + Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATAKAVRAKIDELSKYFPHGLVVKYPYDTTPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A++S++G ++ S+ Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMSVVGFSINTLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPREATRKAMDQITGALVGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F++T+ ++++S+ A+ + A+ I +K I Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 F ++R S L + Sbjct: 511 FFGWFNRTFNKSRDKYHSGVHHVIKRSGRWLIIYM 545 Score = 80.9 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V + + + +++A + + ++++ Sbjct: 258 SQVRIKDVARIELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRAKIDELSKYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + R I + + ++ + + + +++ + L + + + Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T ++ G N ++ ++ IG V+D +VV + + + +S R+ K++ Sbjct: 378 GTFAIMSVVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G V ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 77/233 (33%), Gaps = 8/233 (3%) Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 G + ++G ++ PG S Q + Sbjct: 804 ASGEWTYGSPKLERYNGISAVEIQGAAAPGKSTGQAMSAMEALVAKLPAGIGYEWTGLSL 863 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 + + + +++ + + + W I + L + L L G+ Sbjct: 864 QERQSGSQAPILYGISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGL 920 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 E ++ +LT +G S + +++ + R+ + + ++ L + TS Sbjct: 921 ENDVFFQVGLLTTVGLSAKNAILIVEFARE--LQQGEGMGPIEAALEAARLRLRPILMTS 978 Query: 777 MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 +A + V+P+A+ G + + + G++ A +IF+ + I Sbjct: 979 LAFILGVMPLAISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 Score = 58.9 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 67/520 (12%), Positives = 138/520 (26%), Gaps = 28/520 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I +I +GLL + P L G + Sbjct: 536 RSGRWLIIYMVVIVAVGLLFV------RLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + L + S G Q + + D +++ +KV + Sbjct: 590 LKDVSDYLLNSEKAIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHADEKVQALVGR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L+ I + + D + E + + + + + Sbjct: 650 LFMHFGSYKGA-LVYPVNPPSIPELGTAAGFDFELQDRAGVGHEKLMEARNMLLGMAAKD 708 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 L R Q + + +S + S V D+DG Sbjct: 709 PTLAQVRPNGLNDTPQFKINIDHEKASALGVSLSAIDQTFSIAWASQYVNNFLDTDGRI- 767 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 KV + G + + + R Sbjct: 768 ---KKVYLQGDAPFRMKPEDLSAWY-------VRNTAGGMVPFTSFASGEWTYGSPKLER 817 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + +G ++A + ++ER G S Sbjct: 818 YNGISAVEIQGAAAPGKSTGQAMSAMEALVAKLPAGIGYEWTGLSLQERQSG------SQ 871 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 I +V + L + + L VI L +L G + G++ Sbjct: 872 APILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 +GL+ + IL+ E RE + + + I +++ ++ + L Sbjct: 932 TTVGLSAKNAILIVEFARELQQGEGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAIS 991 Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 G + + +L + F AI ++ + I Sbjct: 992 NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 >gi|149194834|ref|ZP_01871928.1| protein export protein SecD [Caminibacter mediatlanticus TB-2] gi|149134993|gb|EDM23475.1| protein export protein SecD [Caminibacter mediatlanticus TB-2] Length = 518 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 160/538 (29%), Positives = 293/538 (54%), Gaps = 30/538 (5%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M+ + ++++ + G+ +P+FL ++ +++LGLDL+GG +LVL V Sbjct: 1 MKKLNYRLVIFILATLFGIAFTIPSFLGKNP-----------KVNLGLDLQGGMYLVLGV 49 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 ++D + ++ + ++ +K+ + + +++ NKI D+ ++ + ++ Sbjct: 50 KQEDAIKNKIKTIASTIKYISEKKELFIDNLKVKNNKIEFELIDNGDEKAMDKELATI-- 107 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + E + L I++ AI+ +++ IR R+D G++E + Sbjct: 108 -------KGINIKKIPKNGSIEYIVSLKPEEIEKTKEDAIKLAVQTIRSRLDAYGLAEPS 160 Query: 181 IQRLGSHRILIQLPGEQDPSR---LRQLLGTTAKMSFHKVLPNNSKKGFMFGVR------ 231 + R G +I+++LPG + +++L+ + A + + V + Sbjct: 161 VTRQGKDKIVVELPGIKTQKEKESIKKLISSAAHLELYLVDDERKITSPKEAAKYGDILL 220 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 +++ +L++ + G + AT F KT++P + + + GA+ F +VT N+G Sbjct: 221 PDKNNPNKMWLLKTPPVLDGSMITNATVGFTQKTNQPAIFFTLNSQGAKIFGDVTGKNVG 280 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 K LA+V+D +V +APVI + I G QI+ + E A ILA LR+GSLP + ++E+R+ Sbjct: 281 KRLAIVVDNKVYSAPVIQERIGGGSGQIT-VGSPEEAHILAIALRSGSLPAPVVLLEQRS 339 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 VGA LG+DSI A+++G V++VLFM Y G++AD ++ N+ L +++++L GAT Sbjct: 340 VGASLGADSIRNSMIALISGFVIVVLFMAWYYRLAGIIADIALITNLFLIISIMALFGAT 399 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP +AGIVL +G+AVD+N+++NERIRE R+ + +++ G+ A S I D+NIT L Sbjct: 400 LTLPGMAGIVLTVGMAVDANVIINERIRELIREGVPIRKAIEGGYKNAMSAILDANITTL 459 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529 IA + LF +G G ++GFAITM + IL SM TAI + F++ K + + Sbjct: 460 IAAIALFAYGTGTIKGFAITMAIGILASMLTAILGTHGIWQFLLDMGKKITPKDFGMK 517 Score = 143 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 81/176 (46%), Gaps = 4/176 (2%) Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713 VG + + IR ++ +I + +++++ ++ + A LI ++ + AL Sbjct: 337 QRSVGASLGADSIRNSMIALISGFVIVVLFMAWYYRL-AGIIADIALITNLFLIISIMAL 395 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 FG L +A ++ +G +V+ V++ +R+R+ ++ + R I+ + + Sbjct: 396 FGATLTLPGMAGIVLTVGMAVDANVIINERIRELIRE---GVPIRKAIEGGYKNAMSAIL 452 Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 ++ I+ + + +G I FAI MA GI+ + ++I I F+ D K Sbjct: 453 DANITTLIAAIALFAYGTGTIKGFAITMAIGILASMLTAILGTHGIWQFLLDMGKK 508 >gi|146387261|pdb|2HQC|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants Of The Putative Proton Relay Pathway Length = 1053 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 70/690 (10%), Positives = 177/690 (25%), Gaps = 52/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL V I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVADAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665 Score = 71.3 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 81/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVADAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|217076328|ref|YP_002334044.1| protein-export membrane protein SecF [Thermosipho africanus TCF52B] gi|217036181|gb|ACJ74703.1| protein-export membrane protein SecF [Thermosipho africanus TCF52B] Length = 302 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 84/302 (27%), Positives = 155/302 (51%), Gaps = 16/302 (5%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I F+ R + IS++ + S+ +FT G NYG++F GG ++ + N V S VR ++ Sbjct: 2 IDFVGKRKIFIVISLILVVASLISIFTKGFNYGVEFLGGSEIILKVNAEVSESDVRQLIK 61 Query: 600 SLQIGDISFQNFDGEKNFL---------------VRLQYQPGDSVAQTRVLEMVKKKITE 644 L + + + + + ++ + + + + Sbjct: 62 DLAPEFENARITKIKSVDDPKGISKFSIVVSPKDENGELKVYTGEEKSVLSQKIVEAFKN 121 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 + + ++E+ ++ + +A+LIYI +RF++ F +GA+ LI D+ Sbjct: 122 NNYTAEVIGFNETSGYAAQEIKNLTWKAIVFTLLALLIYITLRFQFVFGVGAVVALIHDV 181 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 TLGF++ F E N+ AVAA+LTLIGYS+ND +VVYDR+R+N++ + + L++ S Sbjct: 182 VITLGFYSFFNYELNVAAVAAILTLIGYSLNDTIVVYDRIRENLRR-SRGSTIETLVNNS 240 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 IN+ + R++ TS+ FI + + ++ G+ I FA M G +V SS++IA+PI++ Sbjct: 241 INQVIKRTINTSLTTFIVIFILLLFSGNSIKPFAFGMTIGTIVGTYSSLYIASPIVIRWI 300 Query: 825 DW 826 Sbjct: 301 KK 302 >gi|261341072|ref|ZP_05968930.1| acriflavine resistance protein B [Enterobacter cancerogenus ATCC 35316] gi|288316938|gb|EFC55876.1| acriflavine resistance protein B [Enterobacter cancerogenus ATCC 35316] Length = 1048 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 66/685 (9%), Positives = 174/685 (25%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDVISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + + Sbjct: 233 SIIAQTRLTSAD-------------EFGKILLKVNPDGSQVRLRDVAKVELGGENYDVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + S Sbjct: 280 KFNGKPASGLGIKLATGANALDTAAAIRAELKKMEPFFPSGLKIVYPYDTTPFVQISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L++ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAIFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVQKGGHGEHKGFFGWFNRMF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + + I+ + + + +G Sbjct: 520 DKSTNHYTDSVGSILRSTGRYLLLYIIIVVGMAFLFVRLPSSFLPDEDQGVFLSMAQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + ++ + + E F V G +K Sbjct: 580 GASQERTQKVLDEMTDYFLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGK 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 640 ENKVEAITGRAMGTFSQIKDAMVFA 664 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKVELGGENYDVIAKFNGKPASGLGIKLATGANALDTAAAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVQISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A+FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILAIFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 7/193 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G + E + L + G L + IS I + + + Sbjct: 828 GQAAEGKSTGEAMAMMEQLASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L G+ ++ +LT IG S + +++ + Sbjct: 888 AALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEF 947 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + M+ + ++ L + TS+A + VLP+ + G + Sbjct: 948 AKDLMEKEGKG--LIEATLDAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTG 1005 Query: 801 MAFGIVVAASSSI 813 + G+V A +I Sbjct: 1006 VMGGMVTATVLAI 1018 >gi|54302553|ref|YP_132546.1| putative acriflavin resistence protein [Photobacterium profundum SS9] gi|46915975|emb|CAG22746.1| putative acriflavin resistence protein [Photobacterium profundum SS9] Length = 1051 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 77/690 (11%), Positives = 197/690 (28%), Gaps = 40/690 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + AL + +P P + G Sbjct: 8 QRPKFALVISIILTLAGAIAAL-----NLPVAEYPKISPPSV---------GVTAYYSGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + + + ++ + + ++F + V + Sbjct: 54 SAEVVEEAIADPIEASVNGVENMIYMSSKSANDGSYSLNVTFDIGTDPDMAQVNVQNRIS 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + SKL + + + +++ + I DQ+ + Sbjct: 114 QIESKLPAEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDKFLNNYINLNVKDQLARVKGI 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + + +P ++ L TTA ++ N G ++ Q Sbjct: 174 SEVNVLGGGEYAMRVWLNPEKMANLGLTTADVNAALTEQNVQVAAGQVGAPPYNNAQEVQ 233 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + K + + + F + Sbjct: 234 FNLVTKGRL-------------ETVEEFEDVVLRANNDGSIVFLKDVARVELGKKFYTVN 280 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + ++ + + + L + S Sbjct: 281 GMFRDQPAAIVTLNLQSDANALESGDAVMSLLDGMNKNFPEGMAYETSYDTTLFVAESIK 340 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V +M + + L+ +I +++I T A++ G T+ ++ G+ Sbjct: 341 GVVVTLIQAIILVIAVTYMFLGSMRSTLIPVVAIPVSLIGTFAIMLAAGFTINTVTLFGL 400 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---ALIATV 475 +L IG+ VD ILV E + ++ S + + I S + I Sbjct: 401 ILAIGIVVDDAILVIENVDTNMARDPSLSPRQATLIAMKEVTGPIITSTMVLLAVFIPVA 460 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLS 529 +L G R FA+T+ +S++IS A+++ A+ + + + ++ + Sbjct: 461 MLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGDGNKSRWFQTFNKGLDK 520 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 ++ + + T + KG + + V Sbjct: 521 VTLKYGSIAGYLVRKSVLLVTFFILAVGAVTYLSKTTSTAFVPTEDKGILLVNVQLPDSA 580 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 LS LQ ++ + + G + + L + K+ + Sbjct: 581 SLSRTEEATIKLQDI-LAEEPGIEGITVANGYAFLTGAAASNGASLFIKLKEWGVRNEME 639 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIA 679 ++ + +I+ + ++ + A Sbjct: 640 GEHSSFAISNRINARSATELPEAIVFAMGA 669 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 85/247 (34%), Gaps = 10/247 (4%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + + AN + ++ N + + V Sbjct: 251 VVLRANNDGSIVFLKDVARVELGKKFYTVNGMFRDQPAAIVTLNLQSDANALESGDAVMS 310 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRF----KWYFALG 695 + + + + I GV+++ I A+++ I + + L Sbjct: 311 LLDGMNKNFPEGMAYETSYDTTLFVAES-IKGVVVTLIQAIILVIAVTYMFLGSMRSTLI 369 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 + + + + T G N + ++ IG V+D ++V + + NM + + Sbjct: 370 PVVAIPVSLIGTFAIMLAAGFTINTVTLFGLILAIGIVVDDAILVIENVDTNMARDPS-L 428 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812 S R ++ E G + ++M +P+A+ G FA+ + +V+++ ++ Sbjct: 429 SPRQATLIAMKEVTGPIITSTMVLLAVFIPVAMLPGITGIMYRQFALTICISVVISSINA 488 Query: 813 IFIAAPI 819 + ++ + Sbjct: 489 LTLSPAL 495 Score = 55.5 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 47/393 (11%), Positives = 109/393 (27%), Gaps = 24/393 (6%) Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFII 515 A S ++ + ++F G AV G G ++ S + M I Sbjct: 646 AISNRINARSATELPEAIVFAMGAPAVPGMGAASGFEFVLEDTLGRSRTDLANVMGEMIQ 705 Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575 + + I + +P L + +N + Sbjct: 706 KANQQPEIQFTFSTFRANVPHFYVDIDRVKAKQLGIPLTDIFQTLQGNLGSMYVNDFTLY 765 Query: 576 KGGIQLGVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 ++ V A+ V + S D + + Sbjct: 766 GKNFRVTVQADSEYRDNLDTLERFHVRSASGDMIPLSTLTSIEQVFEPDVAWRYNMYRSA 825 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLI 682 S A + + Q + ++ + ++ G + + + I Sbjct: 826 VIQGSPAPGYSSGDAIAAMERVAADVLPQGYQYEWTGMAYQEVKAGNQAIYAFALALIFI 885 Query: 683 YIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 Y+++ W L I + + + A+ G NL A ++ LI + + ++ Sbjct: 886 YLFLVAQYESWSIPLAIILVVPVATLGSFLALAMTGTPLNLYAQIGLVLLIALAAKNAIL 945 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--S 796 + + + ++ + + TS + + +LP+ G I S Sbjct: 946 IVEFAK--IEREENELDIEKAAVRGGKLRFRAVNMTSWSFILGILPLIFASGAGHISQNS 1003 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 I + G++ + + + R K Sbjct: 1004 LGISLTGGLLCVLLAGTILIPGFFSLVQKRREK 1036 >gi|332978406|gb|EGK15123.1| protein-export membrane protein SecD [Psychrobacter sp. 1501(2011)] Length = 625 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 153/522 (29%), Positives = 264/522 (50%), Gaps = 41/522 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG VLEVD + + L+ S+++RS L+ E I Sbjct: 103 NLAQTTPDWLRSIGAKPLKLGLDLRGGVRFVLEVDMNKALEQRLKTTSNDVRSSLRGERI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 V + I + L F D+ ++ + + L+ + + Sbjct: 163 PVKGINVIDQGLLLHFKDTDLRDKAQRIIQ-------RDEGTQFEMQALMDDQGPALRLN 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 ++ + ++ +A+ Q++ +R RI ++G+SE+ +Q GS+RI+++LPG QD + +++L Sbjct: 216 YNEATLKEINEYAVGQNLTTLRNRISELGVSEALVQSQGSNRIVVELPGVQDTAEAKRVL 275 Query: 207 GTTAKMSFHKVLPNNSK-----KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V N+ DG L+ + ++G + + Sbjct: 276 GRTANLEFRLVADENASYAGGVPPAGTEAFPYMALDGPPSLLNRQPILTGEKV-QGATSG 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296 + P V+I+ D G + T++ +GK + Sbjct: 335 LDENGSPEVNITLDTAGGKLMQNATKNAVGKQMAVLFIENKQKVTYDKDPKTGETVETRT 394 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + QA+ +I+G + A LA +LR+G+L + VEER +G L Sbjct: 395 PYAETKIISQANIQAVLGSSFRITGLNSNAEAAELALLLRSGALAAPMYFVEERTIGPSL 454 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G +I G + G +L+ LFMIV Y +G++A+ ++ N+++ +A+LS+LGA+LTLP Sbjct: 455 GQKNIDDGLFSTKVGYLLVFLFMIVFYRLFGVIANIALAFNLVIMVAVLSILGASLTLPG 514 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL IG+AVD+N+L+ ERIREE + ++ GF RA+S+IFD NIT L+ ++ Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREEIAEGVRPKSAIVAGFDRAFSSIFDGNITTLLVAII 574 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 LF G G ++GFA+T+ + IL S+FTAI + RA++ + + Sbjct: 575 LFSIGSGPIKGFAVTLAIGILSSLFTAIVVTRALVHLVYGNR 616 Score = 155 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 78/185 (42%), Gaps = 4/185 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +GP + ++ I G+ + + + +++ + ++ F + A L ++ + Sbjct: 442 MYFVEERTIGPSLGQKNIDDGLFSTKVGYLLVFLFMIVFYRL-FGVIANIALAFNLVIMV 500 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ G L +A ++ IG +V+ V++++R+R+ + + I + Sbjct: 501 AVLSILGASLTLPGIAGIVLTIGMAVDANVLIFERIREEIAEGVR---PKSAIVAGFDRA 557 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ + + + G I FA+ +A GI+ + ++I + ++ +Y R Sbjct: 558 FSSIFDGNITTLLVAIILFSIGSGPIKGFAVTLAIGILSSLFTAIVVTRALVHLVYGNRK 617 Query: 829 KNARI 833 ++ Sbjct: 618 SVDKL 622 Score = 48.1 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 29/119 (24%), Gaps = 25/119 (21%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 M W L + I L ALPN P +++ Sbjct: 1 MHYPAWKYFLIVTVLIIAGLYALPNLYPDEPA-------------------------VQI 35 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + L++ GI +N L D + + + L Sbjct: 36 TSASAGTELTDDVLTQSKKLLEEAGIAYHDPTFSENSALLRVEDGAAQRKAQEVLRQQL 94 >gi|270263601|ref|ZP_06191870.1| multidrug/solvent efflux pump membrane transporter mepB [Serratia odorifera 4Rx13] gi|270042485|gb|EFA15580.1| multidrug/solvent efflux pump membrane transporter mepB [Serratia odorifera 4Rx13] Length = 1048 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 61/550 (11%), Positives = 155/550 (28%), Gaps = 41/550 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIVMLAGVLAIM-----KLPIAQYPTIAPPA-------------VSISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQIIEQNMNGIDNLMYMSSTSDSSGSVTITLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ L ++++ D + + + D I S Sbjct: 110 KLSLATPLLPQEVQQQGLKVEKSSSSFLMVAGFISDDPNMTQDDIADYVASNIKDPISRS 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L TT ++ NN G Sbjct: 170 QGVGEVQLFGAQ-YAMRIWLDPGKLNNFQLTTTDVTSAITEQNNQIAAGQLGGMPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I + Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGKILLKVNTDGSQVRLKDVARIERGGESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + ++ + Sbjct: 276 AVTARYNGKPAAGLGIKLATGANALNTAKAVKDALTKMQPFFPQGMKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SINEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +++ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVQKGDHGAKTGFFGWF 515 Query: 534 IPDCIAIQFM 543 Sbjct: 516 NRMFEKSTHH 525 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 85/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + ++ + L +++ + ++ K+ Sbjct: 258 SQVRLKDVARIERGGESYAVTARYNGKPAAGLGIKLATGANALNTAKAVKDALTKMQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + Sbjct: 318 PQGMKVVYPYDTTPFVKISINEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 EQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 60.9 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 76/249 (30%), Gaps = 10/249 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + + + V S S + N L + Sbjct: 777 PFRMLPEDINKWFVRGTSGQMVPFSAFSSAKWEYGSPRLERYNGLPSMEILGQAAPGKST 836 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + E+ K + I T + + + + I + L + Sbjct: 837 GEAMNMMEELSSKLPSGIGYDWTGMSYQERLSGNQAP----ALYAISI-LVVFLCLAALY 891 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W + L L + L + G+ ++ +LT IG S + +++ + + Sbjct: 892 ESWSIPFSVMLVLPLGVIGALLAATMRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDL 951 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 M + +++ L + TS+A + VLP+ + G + + G Sbjct: 952 MDKEGKG--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGG 1009 Query: 805 IVVAASSSI 813 ++ A +I Sbjct: 1010 MITATVLAI 1018 >gi|294788537|ref|ZP_06753779.1| protein-export membrane protein SecF [Simonsiella muelleri ATCC 29453] gi|294483414|gb|EFG31099.1| protein-export membrane protein SecF [Simonsiella muelleri ATCC 29453] Length = 312 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 97/304 (31%), Positives = 164/304 (53%), Gaps = 4/304 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-V 589 L I FM IS++ I ++ L T GLNY ++F GG + V + Sbjct: 1 MELFHFKRDIPFMSYGKLTTFISLVTFILAVFFLVTRGLNYSVEFTGGTLMEVEYQQQGA 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 DL VR +L+ L +G+I Q K+ ++RL + AQ + V +K+ + Sbjct: 61 DLDKVRHSLDGLGLGEIQVQALGTNKHIMIRLPNKSDIPSAQ--LSNQVMEKLKADRSDA 118 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 ++ E +GP + EL+ G++ + + I +++Y+ +RF+W FA+ AI + D+ LG Sbjct: 119 NLRQVEFIGPSVGEELVSNGLLAMGMVVIGIIVYLSMRFEWRFAVSAIIANMHDVVIILG 178 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINET 768 FA F EF+LT + VL ++GYSVN+ VVV+DR+R+N + T + + ++ID +I T Sbjct: 179 CFAFFRWEFSLTVLTGVLAVLGYSVNESVVVFDRIRENFRKGTMRNKTVHEIIDNAITAT 238 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 +GR+V T + V+ M ++GG+ + FA+ + GIV SS+ +A+P+LL R Sbjct: 239 MGRTVITHGSTEAMVVSMLIFGGAALHGFAMALTIGIVFGIYSSVLVASPLLLMFGLNRD 298 Query: 829 KNAR 832 + Sbjct: 299 NVIK 302 >gi|257126594|ref|YP_003164708.1| protein-export membrane protein SecF [Leptotrichia buccalis C-1013-b] gi|257050533|gb|ACV39717.1| protein-export membrane protein SecF [Leptotrichia buccalis C-1013-b] Length = 323 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 84/292 (28%), Positives = 150/292 (51%), Gaps = 6/292 (2%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 R +GIS + I S+ LF LN G+DFKGG + + + +D + V S L L Sbjct: 10 RRKLYLGISAVMVIVSLVSLFAIKLNLGVDFKGGELIQLKYEKKIDQNAVNSTLSGLVGE 69 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 + + + + V ++++ + E VG I +E Sbjct: 70 IPQMKAKRVQFSDTDNTVI-IRTEQLKDTQKAKVMSELSQKTGKYEVVKNETVGAVIGKE 128 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L I ++I +I ++IYI +RF++ +A+ I LI D+ G A+ E + +A Sbjct: 129 LTSNAIQALLIGSILIIIYITVRFEFIYAVAGIVALIHDVIIAFGVIAMLKYEIDTPFIA 188 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-----SFRDLIDKSINETLGRSVYTSMAA 779 A+LT++GYS+ND +VV+DR+R+N+K SF ++I+KSIN+ RS+YTS+ Sbjct: 189 AILTILGYSINDTIVVFDRIRENIKRNREGRNKVTQSFGEVIEKSINQVFTRSIYTSLTT 248 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 SV+ + + GG + +F++ + G++V SS+F+A+P++ + + + Sbjct: 249 LFSVIVLLILGGDTLKTFSMTLFIGMLVGTYSSVFVASPLVYIMKKGKNEPK 300 >gi|326791641|ref|YP_004309462.1| protein-export membrane protein SecF [Clostridium lentocellum DSM 5427] gi|326542405|gb|ADZ84264.1| protein-export membrane protein SecF [Clostridium lentocellum DSM 5427] Length = 310 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 78/298 (26%), Positives = 134/298 (44%), Gaps = 5/298 (1%) Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 + A V + L + + N I+F GG + V RP + + +RS L Sbjct: 6 NRKKYYAISIIVILIGLVFMVMNAVRGQGAFNQDIEFTGGSLIQVNMERPFN-NELRSEL 64 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 ++ + A TR K + E Sbjct: 65 LAITEEVTGNTGARITSAGDTGVLITMTREDASTRKELFEAIKEKYDLKDDIALRDEDFS 124 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIE 717 P IS+++ I V++ +L+Y+ RFK + F A+ L D+ L +A+F I Sbjct: 125 PTISKDIKVGAIKAVVVGIALILVYVSFRFKDYRFGTSAVIALAHDVLVMLSVYAIFRIP 184 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKN---MKLYTTSISFRDLIDKSINETLGRSVY 774 N + +AA+LT++GYS+ND +V++DR+R+N + L + + +L+D SIN+T+GRS+ Sbjct: 185 LNNSFIAAMLTIVGYSINDTIVIFDRIRENKEKVGLKDHAAANEELVDSSINQTIGRSIA 244 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 TS+ + V+ + G + FA P+ GI+ SSIF+A+PI + + Sbjct: 245 TSLTTVVMVILLFALGTDSVKDFAFPLIIGILAGTYSSIFVASPIWYEFTHRKGNKVK 302 >gi|167031893|ref|YP_001667124.1| preprotein translocase subunit SecD [Pseudomonas putida GB-1] gi|166858381|gb|ABY96788.1| protein-export membrane protein SecD [Pseudomonas putida GB-1] Length = 620 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 167/525 (31%), Positives = 273/525 (52%), Gaps = 41/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD D + +++Y E+++ L+KE I Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERI 165 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q I L FAD +E + D + + Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARVLIRKNFN--------DFDLTTTERNELAVLRLA 217 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F + K F G VE + I+G + A A+FD Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAPVERGLIITGDQVTDAQASFDEHG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+I D G TR N+G+ +AV+ + + Sbjct: 335 RPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQTVDGVEKDVAVQSFVE 394 Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+I +Y +G++A ++ N++L LAL+SLLGATLTLP IAG Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRGFGVIATIALAGNMVLLLALMSLLGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE + SV ++ GF+RAY+ I D+N+T+L+ +LF Sbjct: 515 IVLTMGMAVDANVLIFSRIREELKAGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G G V+GFA+TM L I SMFTA+ + RAM+ + +K + Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVNLTCGGRDIKKLW 619 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 91/250 (36%), Gaps = 5/250 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V + + + + ++ L G + + + Sbjct: 372 VTRYVKQTVDGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I ++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-GFGVIATIALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ +K +S + I Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELKA---GMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820 + N + ++ + + + G + FA+ M+ GI + +++ + ++ Sbjct: 548 HEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVN 607 Query: 821 LFIYDWRAKN 830 L K Sbjct: 608 LTCGGRDIKK 617 Score = 48.9 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 17/121 (14%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W L ++ +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117 D + + L ++G G+ + ++++ + A + Sbjct: 51 LDRVSKALVDAKITVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQT 110 Query: 118 F 118 Sbjct: 111 T 111 >gi|157371729|ref|YP_001479718.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Serratia proteamaculans 568] gi|157323493|gb|ABV42590.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Serratia proteamaculans 568] Length = 693 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 78/689 (11%), Positives = 191/689 (27%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIILCLTGALAIF-----SLPVEQYPNLAPP-------------NVRISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S + + +TL+F +V Sbjct: 50 PGASAQTLENTVTQIIEQNMTGLDNMMYMSSQSTNTGRATVTLTFEAGTDPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L + + + + ++++ + + I+ D + Sbjct: 110 QLQAAIKRLPQAVQTQGVTVSKSGDTTLMMVAFVSTDGSMDKQDIADYIVSNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L TT + N G D Sbjct: 170 NGVGSMDVYGSQ-YAMRIWLDPNKLNSYQLTTQDVVSAIQSQNAQVAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEQFQKITLRVNQDGSLVTLGDVATIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T + A L V Sbjct: 276 DYLSRYNGMQAAGMNIKLASGANELQTDQLVKDKIAELSQYFPHGLEAKVAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIKDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAILSACGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + S + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPRDATRKSMGQIQSALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPIAKGHHHGKRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A + + V +L ++ + + +G + V Sbjct: 516 NRMFNRNADRYERGVARVLHSSVRYIVIYLLLLGGMALLFIKLPTSFLPQEDRGVFTVQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L +E ++ ++ + D F G+ R+ +K Sbjct: 576 QLPPGSTLQQTTKVVEKVEHYFLTKEKQDVLSVFSTIGAGPGGNGQNVARMFIRLKDWDL 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 ++ + K ++I ++ Sbjct: 636 RTSGANSSFDIIDRATKEFNQIIEARVIA 664 Score = 77.4 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 90/241 (37%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + + + + ++++ ++++ P Sbjct: 260 VTLGDVATIELGGENYDYLSRYNGMQAAGMNIKLASGANELQTDQLVKDKIAELSQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEAKVAYETTPFVKASIKDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + G N + A++ IG V+D +VV + + + +S RD KS+ + Sbjct: 380 FAILSACGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPRDATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQSALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 >gi|302561711|ref|ZP_07314053.1| protein-export membrane protein SecF [Streptomyces griseoflavus Tu4000] gi|302479329|gb|EFL42422.1| protein-export membrane protein SecF [Streptomyces griseoflavus Tu4000] Length = 372 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 90/309 (29%), Positives = 147/309 (47%), Gaps = 13/309 (4%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L + F++ R GISIL +I +I L GL+ GI+F+GG N V + Sbjct: 10 RLHHGEVGYDFIKNRKIWYGISILITITAIVGLAVRGLHMGIEFQGGAVFTTPKNMSVSV 69 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + E D Q +R+Q D+ ++ E + K + Sbjct: 70 ATAEGYAEDASGHDAIVQKLGDG---SLRIQVAGIDTGTSDKIKETLAKDLKVDGE---Q 123 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 N E+VGP ++ K G+ I + ++IY+ I F+W A+ A LI DIT T+G + Sbjct: 124 INAELVGPSWGEQIANKAWQGLGIFLVLVVIYLAIAFEWRMAVAAFVALIHDITITVGIY 183 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769 AL G E V +LT++GYS+ D VVV+D +++ K T ++ ++ ++SIN TL Sbjct: 184 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDITKQTRWTYSEIANRSINSTL 243 Query: 770 GRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 RSV T++ A + V + GG V + ++ + G+ A SSIFIA P++ + Sbjct: 244 VRSVNTTVVALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLK 303 Query: 825 DWRAKNARI 833 + + Sbjct: 304 ELEPSMKSL 312 >gi|146306951|ref|YP_001187416.1| acriflavin resistance protein [Pseudomonas mendocina ymp] gi|145575152|gb|ABP84684.1| acriflavin resistance protein [Pseudomonas mendocina ymp] Length = 1022 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 70/584 (11%), Positives = 165/584 (28%), Gaps = 39/584 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ +GL+ + + +P+ + Sbjct: 9 RRPVFATVLSLIVVLLGLMA-----YDRLNVREYPNIDVPIVT---------VQVTYPGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + +++ S ++ R +IT F R + A+ V L Sbjct: 55 SPEIMESQVAQPVEDVLSGIEGLDFVTSISRAENTQITAQFRLGRSADEAANDVRDHLGR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 V + L + + ++ ++ + + A+E + + R D++ Sbjct: 115 VRNLLPDEVDEPIVQKVEADAQPVIWIAFHSE--QHSAMEITDVLERVIKDRLQTIPGVS 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP +L T + N R S ++ Sbjct: 173 EVQVRGARTFSMRIWLDPEKLAAHNLTVQDVEDALRRQNVEIPAGRIESREREFSVLSET 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ D+ Sbjct: 233 DLRTPAQF--------------------NELILDDSQDYLLRLSDVGRAEIGPRDERTVV 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +A + + ++A V N S Sbjct: 273 RFKGLPAVTLGLVKQATANPLDISDGLEAAWDDVKALLPEGMNMTVANDNSQFIRESIDN 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++++F+ + + L+ +I +++I AL+SL+G T+ ++ +V Sbjct: 333 VFATIWEAVALVILIIFIFLRSLRATLIPLVTIPVSLIGAFALMSLMGFTINTLTLLAMV 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480 L IGL VD I++ E I + G + +T + F Sbjct: 393 LAIGLVVDDAIVMLENIHRHIEAGMKPMQAAFKGSREIAFAVIAMTLTLAAVFAPIGFMQ 452 Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G FA T+ S+L+S F A+++ M +++ + + + + + Sbjct: 453 GTTGKLFTEFAWTLAGSVLVSGFVALTLTPMMCAVLLKPHQHEQRHSRVYNLIEGFLNGL 512 Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + L + + Sbjct: 513 TYSYKHSLDRALRAWPLVLGVLLAAFVLCAWLFSGLRSELAPTE 556 Score = 81.7 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 74/212 (34%), Gaps = 12/212 (5%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 S + VK + E + ++ + + + V + + + I++ Sbjct: 296 SDGLEAAWDDVKALLPEGMNMTVANDNSQFIRESIDNVFATIWEAVALVILIIFIFL--- 352 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 L + T+ + + +L G N + A++ IG V+D +V+ + + Sbjct: 353 RSLRATLIPLVTIPVSLIGAFALMSLMGFTINTLTLLAMVLAIGLVVDDAIVMLENIH-- 410 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804 + + K E + ++ P+ G+ FA +A Sbjct: 411 -RHIEAGMKPMQAAFKGSREIAFAVIAMTLTLAAVFAPIGFMQGTTGKLFTEFAWTLAGS 469 Query: 805 IVVAASSSIFIAA---PILLFIYDWRAKNARI 833 ++V+ ++ + +LL + +++R+ Sbjct: 470 VLVSGFVALTLTPMMCAVLLKPHQHEQRHSRV 501 Score = 77.8 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 81/243 (33%), Gaps = 9/243 (3%) Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 D L +L + + +R + A + E + + Sbjct: 770 DREGGMVQLSNLISVRETVAPRELNHFNQLRAVTISANVGAGYTLGEALDYLEAGARAVF 829 Query: 650 TIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFK-WYFALGAITTLILDITK 706 + + +I + + + + +F+ + L + ++ L + Sbjct: 830 PPETQYDYTGTSRDFKESSSGIALIFTLALAFIFLVLAAQFESFSDPLIILFSVPLSMAG 889 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 L LFG N+ + ++TLIG +++ + L R + ++ Sbjct: 890 ALLALTLFGGTLNIYSQIGLVTLIGLITKHGILIVEFAN---HLLREGRELRGAVIEASV 946 Query: 767 ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + L + T+ A + LP+A+ G + + G++V ++++ + L + Sbjct: 947 QRLRPILMTTGAMVLGSLPLAIATGAGAESRQQIGLVIVGGLLVGTFFTLYVIPTLYLLL 1006 Query: 824 YDW 826 W Sbjct: 1007 RRW 1009 >gi|332284299|ref|YP_004416210.1| Solvent-resistant pump membrane transporter Srp [Pusillimonas sp. T7-7] gi|330428252|gb|AEC19586.1| Solvent-resistant pump membrane transporter Srp [Pusillimonas sp. T7-7] Length = 1048 Score = 197 bits (500), Expect = 5e-48, Method: Composition-based stats. Identities = 72/686 (10%), Positives = 180/686 (26%), Gaps = 42/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I G L ++++P+ + Sbjct: 8 RPIFAWVLAIVIMLAGALSIF-----GMPVNQYPNIAAPAI---------SVSVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L + + L+F + +V LQ Sbjct: 54 AQTVQDTVVQVIEQKMNGLDGLRYMSSESNSDGSMSVILTFEQGIDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + + +++ + A + S I D I +E Sbjct: 114 ATPLLPEEVQRQGIRVAKYQANFMLVVSLVDESGRMDAADLSDYIATNFQDPISRTEGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP +L T ++ N G Sbjct: 174 DFMLFGSQ-YAMRIWLDPEKLNSFALTPGDVANAIRTQNVQVASGQLGGLPTAKGVQLTA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + I Sbjct: 233 TIIGKTRL-------------QTIPEFENILLKVNPDGSQLRLRDVSEITLGAENFSISS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T+E + L A + S Sbjct: 280 EYNGNPSSGMALRLASGGNLLETVERVEGVIGKLEAFLPDGLKIVYPYDTTPVVEASIDS 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +LS G T+ + ++ +V Sbjct: 340 VVHTLFEAIVLVFLVMYLFLQNFRATLIPTLAVPVVLLGTFGILSAFGFTINILTMYAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEGLSAREATRKSMGQIQGALVGIGVVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528 GG + FAIT+ ++ +S+ A+ A+ + + + Sbjct: 460 GGSAGIIYKQFAITIVSAMGLSVLVALIFTPALCATMLKPSTAEHHNKKGFFGWFNRVFD 519 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 + + V ++ ++ + + + + V Sbjct: 520 RGNNRYQRSVTGMLKHRGRYMVVFVLIVGGLAVLFSRIPTTFLPEEDQSIMFVQVQTPSN 579 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L+ + ++ ++ E V+ G +K + Sbjct: 580 SSAERTGAALDEVTNYLLNEESGMVESVMTVKGFSFAGRGQNSGIAFVKLKPWEEREGDV 639 Query: 649 STIQNTEIVGPKISRELIRKGIVGVI 674 + + + ++ + Sbjct: 640 TDVFSLAQRSGVRFAQIKDATAFAFV 665 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 86/231 (37%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + IS + + + G+ + +E V K+ +P Sbjct: 264 DVSEITLGAENFSISSEYNGNPSSGMALRLASGGNLLETVERVEGVIGKLEAFLPDGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + + + + + +++ + + L + + + T G Sbjct: 324 VYPYDTTPVVEASIDSVVHTLFEAIVLVFLVMYLFLQNFRATLIPTLAVPVVLLGTFGIL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 + FG N+ + A++ IG V+D +VV + + + +S R+ KS+ + G Sbjct: 384 SAFGFTINILTMYAMVLAIGLLVDDAIVVVENV--ERVMVEEGLSAREATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819 V + +PMA +GGS + FAI + + ++ ++ + Sbjct: 442 LVGIGVVLSAVFVPMAFFGGSAGIIYKQFAITIVSAMGLSVLVALIFTPAL 492 Score = 58.2 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 64/167 (38%), Gaps = 8/167 (4%) Query: 673 VIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 ++ + +++++ + W + + L + + L G+ ++ +LT Sbjct: 872 MLYALTVLIVFLSLAALHESWSVPASVMLVVPLGVIGAVIATLLRGLSNDVFFQIGLLTT 931 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 +G S + +++ + ++ + + ++ L + TS+A VLPMA+ Sbjct: 932 VGLSAKNAILIVEFAKQLYEQE--GRTLVQAAVEAAKLRLRPIIMTSLAFTFGVLPMALA 989 Query: 790 GG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 G + A + G++ A +IF + + K + Sbjct: 990 SGAGQGSQHAIATGVVGGMITATVLAIFFIPLFFVVVMSLSKKKTPV 1036 >gi|332978345|gb|EGK15070.1| RND superfmily multidrug/dye/detergent efflux pump AcrB [Psychrobacter sp. 1501(2011)] Length = 1074 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 81/692 (11%), Positives = 205/692 (29%), Gaps = 51/692 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G++ + ++++P P + + Sbjct: 8 RPIFAWVISILIMLLGVISVI-----NLPIEQYPRIAPPT-------------INVSASY 49 Query: 63 DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + +K + S +TL+F + + +V Sbjct: 50 PGANAQTVEDSVVQVIEQRMKGLDGLMYMSSSSSSNGSGSVTLTFENGTDPDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ S L ++ + T +++ + ++ + + +DQI Sbjct: 110 KLQAAMSALPESVQRQGVNVTKSSSSFLMVQGFISEDGSMDGVDIADYVASNIVDQISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + + DP+RLR + + N G + Sbjct: 170 EGVGEVQLFGS-SYAMRVWLDPARLRSYNLVPSDVVDAIRAQNAQVSAGQLGQAPADVEN 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 I+ ++ + + + + + Sbjct: 229 QV------------INATVTVQSYLKTPEEFSNILLKTDNSGAQVRLRDVAKVEVGSENY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + S + T + A L A P ++V Sbjct: 277 GIKALYNGKEASGIGISLAPGSNALDTRQLVEDRMAQLEANFPPGLTSVVPYDTTPFVKL 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + ++ ++ + ++ T A+L + G ++ + ++ Sbjct: 337 SIEQVVRTLVEAIILVFLVMFLFLQNWRATIIPTLAVPVVLLGTFAVLYVAGFSINVLTM 396 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474 +VL IGL VD I+V E + ++ ++ + I + I + + Sbjct: 397 FAMVLSIGLLVDDAIVVVENVERLLEEHPDLTVKEATIQSMGEISKVVIGIALILSAVFV 456 Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSI 523 + FF G R F+IT+ S+++S A+ A+ + + + Sbjct: 457 PMAFFGGSTGVIYRQFSITLITSMVLSAIVALVFTPALCVTLLKRSKNHGEEKKGFFGWF 516 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + I + + + + I ++ L G + +G + V Sbjct: 517 NRSFEKTSRNYERFIGKSINVKWLYALAYAAIIGIMAVLFLRIPGSFLPEEDQGIMVTLV 576 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ ++ L+ + + + + E F V G + Sbjct: 577 QLPAGSNIEETQAVLDKVDAYYHTQEGKNIESVFTVAGFSFAGQGQNMGLAFVRLSDWEN 636 Query: 644 EIVPLSTIQNT-EIVGPKISRELIRKGIVGVI 674 ++ Q E +L + ++ Sbjct: 637 RSGEENSAQAVAERAMGYFFTQLNEAQVYAIV 668 Score = 84.0 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 93/252 (36%), Gaps = 5/252 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + V L V + I E + + +++ +++E ++ Sbjct: 256 NSGAQVRLRDVAKVEVGSENYGIKALYNGKEASGIGISLAPGSNALDTRQLVEDRMAQLE 315 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + + ++ + I + + +++ + W + + + Sbjct: 316 ANFPPGLTSVVPYDTTPFVKLSIEQVVRTLVEAIILVFLVMFLFLQNWRATIIPTLAVPV 375 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T + G N+ + A++ IG V+D +VV + + + + ++ ++ Sbjct: 376 VLLGTFAVLYVAGFSINVLTMFAMVLSIGLLVDDAIVVVENV-ERLLEEHPDLTVKEATI 434 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 +S+ E + ++ +PMA +GGS F+I + +V++A ++ + Sbjct: 435 QSMGEISKVVIGIALILSAVFVPMAFFGGSTGVIYRQFSITLITSMVLSAIVALVFTPAL 494 Query: 820 LLFIYDWRAKNA 831 + + + Sbjct: 495 CVTLLKRSKNHG 506 Score = 58.2 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 34/256 (13%), Positives = 82/256 (32%), Gaps = 13/256 (5%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 D + + + ++ N N A T Sbjct: 783 PDDIQKWYVRNNNGEMISFDAFSDSEWQYASPRLTRYNSFPSMNIQGSAAPGLSTGEAMT 842 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + +MV + I T + E ++ +S + + + + ++ + Sbjct: 843 AMEQMVGQLPEGIGFEWTGMSLEEKKSGAQAPMLY------ALSILVVFLCLAALYESWS 896 Query: 693 ALGAITTLILDITKTLGFFALFG-IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 A+ ++ F F ++ +LT++G S + +++ + ++ Sbjct: 897 IPFAVLLVVPLGVLGAVLFTWFRDFANDIYLQVGLLTVVGLSAKNAILIIEFAKE---HQ 953 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808 S RD + + + L + TS+A + VLP+ + G + + G+V A Sbjct: 954 EAGNSLRDAVMLAARQRLRPIIMTSLAFGLGVLPLFLATGPGAGSQNAIGTSVVGGVVTA 1013 Query: 809 ASSSIFIAAPILLFIY 824 IF +++ Sbjct: 1014 TLLGIFFIPMFYVWVR 1029 >gi|319787467|ref|YP_004146942.1| protein-export membrane protein SecD [Pseudoxanthomonas suwonensis 11-1] gi|317465979|gb|ADV27711.1| protein-export membrane protein SecD [Pseudoxanthomonas suwonensis 11-1] Length = 613 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 149/517 (28%), Positives = 268/517 (51%), Gaps = 37/517 (7%) Query: 30 SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89 S + + + + LGLDL+GG H VL+VD++ + + Y++++R L+ + I Sbjct: 106 STVPDWLDRIGAKPMVLGLDLQGGVHFVLQVDQNAALEKRVDAYAEDVRVTLRDKRIRYT 165 Query: 90 SMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148 ++ + + I + E + + +N +L + + + Sbjct: 166 AVDRRPDHTIVATLGTGTDPEQARTTLAQAMPAMNVEL------------QGNRLVVRIP 213 Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 ++Q+ AIEQ++ +R R++++G++E IQR G RI++QLPG QD + ++++G Sbjct: 214 DAELNQIAGSAIEQNIATLRNRVNELGVAEPIIQRQGEERIVVQLPGVQDTAEAKRMIGA 273 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATANFDP 263 TA + + V+ N+ G DG+ L+ +V ++G + A ++ D Sbjct: 274 TATLEYRAVIEGNAMDAVSTGRVPPEAKVYYRRDGSPVLLSKRVIVTGDQMVAAQSSVDQ 333 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323 V ++ + +G R F+ T ++GKP+AVV RV V+N Sbjct: 334 NGLPA-VSVTLNNVGGDRMFDFTSASVGKPMAVVYTERVPQVKVVNGEEVRSFRVKEEVI 392 Query: 324 TIE------------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 ++ A LA +LRAGSL ++ VEE+ VG LG +++ +G Sbjct: 393 SVANINGVFGKNFQTTGLEKTEADDLAKLLRAGSLAAPMDFVEEKIVGPSLGKENVQRGV 452 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 A++ + ++F V Y +G++ ++ N+++ +A++SL GAT+TLP AG+ L IG Sbjct: 453 TAVLYAFLFTLVFFAVYYRMFGVLTGIALMFNLLIVVAVMSLFGATMTLPGFAGLALSIG 512 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 L+VD+N+L+NERIREE R ++ G+ +A TIFD+N+T ++A V L+ FG G + Sbjct: 513 LSVDANVLINERIREELRAGVPPKAAIANGYEKASGTIFDANLTGILAGVALYAFGTGPL 572 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +GFA+TM + I SMFTAI++ RA+ + + +K Sbjct: 573 KGFAVTMVIGIFASMFTAITVSRALAVLLYSRRKKLK 609 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 98/254 (38%), Gaps = 4/254 (1%) Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + V+ V V + E N + +Q Sbjct: 362 PMAVVYTERVPQVKVVNGEEVRSFRVKEEVISVANINGVFGKNFQTTGLEKTEADDLAKL 421 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + + +IVGP + +E +++G+ V+ + + L++ + ++ F + Sbjct: 422 LRAGSLAAPMDFVEEKIVGPSLGKENVQRGVTAVLYAFLFTLVFFAVYYRM-FGVLTGIA 480 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L+ ++ + +LFG L A + IG SV+ V++ +R+R+ ++ + + Sbjct: 481 LMFNLLIVVAVMSLFGATMTLPGFAGLALSIGLSVDANVLINERIREELRA---GVPPKA 537 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 I + G ++ ++ + + +G + FA+ M GI + ++I ++ + Sbjct: 538 AIANGYEKASGTIFDANLTGILAGVALYAFGTGPLKGFAVTMVIGIFASMFTAITVSRAL 597 Query: 820 LLFIYDWRAKNARI 833 + +Y R K + Sbjct: 598 AVLLYSRRKKLKSL 611 >gi|112182849|emb|CAL18626.1| AcrB protein [Enterobacter cloacae] gi|148807120|gb|ABR13271.1| AcrB [Enterobacter cloacae] Length = 1048 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 65/685 (9%), Positives = 172/685 (25%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + + + Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + + S Sbjct: 280 KFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFFPSGLKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L++ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAIFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 G R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 460 SGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGGHGEHKGFFGWFNRMF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + + I+ + + + +G Sbjct: 520 DKSTHHYTDSVGNILRSTGRYLLLYIIIVVGMAFLFVRLPSSFLPDEDQGVFLSMAQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + ++ + + E F V G +K Sbjct: 580 GATQERTQKVLDEMTDYFLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + Sbjct: 640 ENKVEAITGRAMGTFSHIKDAMVFA 664 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + DI + + L +++ + KK+ Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A+FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAIFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA + GS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFSGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + G L + IS I + + + ++ W Sbjct: 838 EAMNLMEELASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|300935393|ref|ZP_07150391.1| putative ATP synthase F0, A subunit [Escherichia coli MS 21-1] gi|300459371|gb|EFK22864.1| putative ATP synthase F0, A subunit [Escherichia coli MS 21-1] Length = 1035 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 Q R + + L+ + + ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGTENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 42.0 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYD 825 + + Sbjct: 1020 FVLVKR 1025 >gi|297626356|ref|YP_003688119.1| Protein-export membrane protein secF [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922121|emb|CBL56689.1| Protein-export membrane protein secF [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 415 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 76/322 (23%), Positives = 143/322 (44%), Gaps = 13/322 (4%) Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580 + L F+ R ISI+ + S+ L GLN GI+FKGG Sbjct: 20 RKGKYTGNFAHRLYTGEFEFNFVARRKLWYSISIVLIVISLAALLFRGLNLGIEFKGGSV 79 Query: 581 LGVL--ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638 V + + VR ++ ++ D++ VR+Q + + T++ + + Sbjct: 80 FTVPVSSTSSQSVDQVRKAVDESKVPDLTGAQATAVGTGTVRVQVRSLSTDEVTQMRDAL 139 Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697 + ++GP ++ K +I+ + + + IW F+ W A+ A+ Sbjct: 140 ASTV---NTTPDKVGYSLIGPSWGGQITMKAFQALIVFLVLVALMIWAFFREWRMAISAL 196 Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-IS 756 LI D+ T+G +AL G + + VLT++GYS+ D VVV+D++R+N T + Sbjct: 197 VGLIHDLIVTVGLYALIGFTVTPSTLIGVLTILGYSLYDNVVVFDKVRENTVDITKQDRT 256 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG------SVIGSFAIPMAFGIVVAAS 810 F + + ++N+ L RS+ T++ + V+ + + G + + + G+V A Sbjct: 257 FSEAANAAVNQVLVRSINTTVIGVLPVIALLIAGVGFLGGDGPLADLGLALLIGMVAGAY 316 Query: 811 SSIFIAAPILLFIYDWRAKNAR 832 SSIFIA P+L + + + Sbjct: 317 SSIFIATPLLTQLREREPDMKK 338 >gi|293414624|ref|ZP_06657273.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli B185] gi|331652336|ref|ZP_08353355.1| multidrug efflux protein [Escherichia coli M718] gi|291434682|gb|EFF07655.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli B185] gi|331050614|gb|EGI22672.1| multidrug efflux protein [Escherichia coli M718] Length = 1035 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 77/683 (11%), Positives = 187/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592 Q R + + + L L ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 42.8 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 31/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYDWRAKNAR 832 + + A +R Sbjct: 1020 FVLVKRLFAGKSR 1032 >gi|260891455|ref|ZP_05902718.1| protein-export membrane protein SecF [Leptotrichia hofstadii F0254] gi|260858838|gb|EEX73338.1| protein-export membrane protein SecF [Leptotrichia hofstadii F0254] Length = 323 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 82/292 (28%), Positives = 149/292 (51%), Gaps = 6/292 (2%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 R +GIS + I S+ LF LN G+DFKGG + + + +D + V L SL Sbjct: 10 RRKLYLGISAVMVIVSLVSLFAIKLNLGVDFKGGELIQLKYEKKIDQNAVNGTLNSLVGE 69 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 + + + + ++++ + E VG I +E Sbjct: 70 IPKLKAKRVQFSDTDNTVI-IRTEQLDNTQKTKIMSELSKKTGKYEVVKNETVGAVIGKE 128 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L I ++I +I ++IYI +RF++ +A+ I L+ D+ G A+ E + +A Sbjct: 129 LTSNAIQALLIGSILIIIYITVRFEFIYAVAGIVALVHDVIIAFGVIAMLKYEIDTPFIA 188 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-----SFRDLIDKSINETLGRSVYTSMAA 779 A+LT++GYS+ND +VV+DR+R+N+K SF ++I+KSIN+ RS+YTS+ Sbjct: 189 AILTILGYSINDTIVVFDRIRENIKRNREGRNKVTLSFGEVIEKSINQVFTRSIYTSLTT 248 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 SV+ + + GG + +F++ + G++V SS+F+A+P++ + + + Sbjct: 249 LFSVIVLLILGGDTLKTFSMTLFVGMLVGTYSSVFVASPLVYIMKKGKNEPK 300 >gi|91210587|ref|YP_540573.1| acriflavine resistance protein B [Escherichia coli UTI89] gi|218558282|ref|YP_002391195.1| efflux pump ( multidrug-efflux transport protein) [Escherichia coli S88] gi|237705320|ref|ZP_04535801.1| acriflavine resistance protein B [Escherichia sp. 3_2_53FAA] gi|91072161|gb|ABE07042.1| acriflavine resistance protein B [Escherichia coli UTI89] gi|218365051|emb|CAR02754.1| Putative efflux pump (Putative multidrug-efflux transport protein) [Escherichia coli S88] gi|226900077|gb|EEH86336.1| acriflavine resistance protein B [Escherichia sp. 3_2_53FAA] gi|294491511|gb|ADE90267.1| acriflavine resistance protein B [Escherichia coli IHE3034] gi|315289134|gb|EFU48532.1| putative ATP synthase F0, A subunit [Escherichia coli MS 110-3] gi|323949103|gb|EGB44995.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H252] gi|323953834|gb|EGB49635.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H263] Length = 1035 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 Q R + + L+ + + ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 42.0 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYD 825 + + Sbjct: 1020 FVLVKR 1025 >gi|110641527|ref|YP_669257.1| multidrug efflux protein [Escherichia coli 536] gi|170683789|ref|YP_001743889.1| multidrug efflux transport protein EefB [Escherichia coli SMS-3-5] gi|191171011|ref|ZP_03032562.1| multidrug efflux transport protein EefB [Escherichia coli F11] gi|227886272|ref|ZP_04004077.1| multidrug efflux transport protein EefB [Escherichia coli 83972] gi|293409687|ref|ZP_06653263.1| conserved hypothetical protein [Escherichia coli B354] gi|300971696|ref|ZP_07171569.1| putative ATP synthase F0, A subunit [Escherichia coli MS 45-1] gi|300971884|ref|ZP_07171684.1| putative ATP synthase F0, A subunit [Escherichia coli MS 200-1] gi|301046137|ref|ZP_07193312.1| putative ATP synthase F0, A subunit [Escherichia coli MS 185-1] gi|331682781|ref|ZP_08383400.1| multidrug efflux protein [Escherichia coli H299] gi|110343119|gb|ABG69356.1| multidrug efflux protein [Escherichia coli 536] gi|170521507|gb|ACB19685.1| multidrug efflux transport protein EefB [Escherichia coli SMS-3-5] gi|190908743|gb|EDV68331.1| multidrug efflux transport protein EefB [Escherichia coli F11] gi|222033098|emb|CAP75838.1| acriflavine resistance protein B [Escherichia coli LF82] gi|227836476|gb|EEJ46942.1| multidrug efflux transport protein EefB [Escherichia coli 83972] gi|291470155|gb|EFF12639.1| conserved hypothetical protein [Escherichia coli B354] gi|300301870|gb|EFJ58255.1| putative ATP synthase F0, A subunit [Escherichia coli MS 185-1] gi|300309275|gb|EFJ63795.1| putative ATP synthase F0, A subunit [Escherichia coli MS 200-1] gi|300411182|gb|EFJ94720.1| putative ATP synthase F0, A subunit [Escherichia coli MS 45-1] gi|307553355|gb|ADN46130.1| multidrug efflux transport protein EefB [Escherichia coli ABU 83972] gi|312945929|gb|ADR26756.1| multidrug efflux protein [Escherichia coli O83:H1 str. NRG 857C] gi|315295337|gb|EFU54667.1| putative ATP synthase F0, A subunit [Escherichia coli MS 153-1] gi|320195692|gb|EFW70317.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli WV_060327] gi|324006145|gb|EGB75364.1| putative ATP synthase F0, A subunit [Escherichia coli MS 57-2] gi|324011289|gb|EGB80508.1| putative ATP synthase F0, A subunit [Escherichia coli MS 60-1] gi|331080412|gb|EGI51591.1| multidrug efflux protein [Escherichia coli H299] Length = 1035 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 Q R + + L+ + + ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 42.0 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYD 825 + + Sbjct: 1020 FVLVKR 1025 >gi|332187559|ref|ZP_08389296.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Sphingomonas sp. S17] gi|332012488|gb|EGI54556.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Sphingomonas sp. S17] Length = 1062 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 71/560 (12%), Positives = 152/560 (27%), Gaps = 41/560 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ GLL L + +FP+ P + + + Sbjct: 8 RPIFAYVLAVLVVIAGLLS-----LRTLPIAQFPAIAPPA-------------VSITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEGIGV----FSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + +K S ITL+F + +V Sbjct: 50 PGADAQTLENTTTQIIEQQMKGIDHLRYFSSSSSSAGSVTITLTFEQGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ ++ + ++ + A + + + + D + Sbjct: 110 KLQAATPLLPQEVQRQGIIVAKATQNFLLFVGLYSENGKHDADDLADIVASRISDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T A ++ N G + Sbjct: 170 TGVGDTQIFGSQ-YAMRIWVDPIKLNNYALTMADVTNAVTAQNAQVSAGQIGAQPAPKEQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V ++ + + Sbjct: 229 MLNATVSVSSRLT-------------TPEQFAQIRLKSNTDGSIVRLGDVARVAIGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T+ L I Sbjct: 276 AFSAQWNGKPASGIGIKLAPGANALDTVVAVKARVNELAKTFPSDVKVIFPYDTSPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + L+ ++ + + T A+L+ G ++ ++ Sbjct: 336 SIEQVIETLVEAVVLVFLVMFLFLQNFRATLIPTIAVPVVLTGTFAVLAAFGYSINTLTL 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + S + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERLITTEHLSPKEAARKSMDEITGALIGIAAVLSAVFLP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + A+ I++ + + F Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVAVALILTPALCATILKPHDPNKAEGHGPLARFF 515 Query: 534 IPDCIAIQFMRARFWGVGIS 553 R R+ S Sbjct: 516 RWFNDRFDRGRDRYEKGVRS 535 Score = 76.7 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 84/222 (37%), Gaps = 8/222 (3%) Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 + + G L VA + + K V + +T Sbjct: 276 AFSAQWNGKPASGIGIKLAPGANALDTVVAVKARVNELAKTFPSDVKVIFPYDTSPFVRL 335 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 ++I + V++ + M +++ + L + + +T T A FG N Sbjct: 336 SIEQVIETLVEAVVLVFLVMFLFLQ---NFRATLIPTIAVPVVLTGTFAVLAAFGYSINT 392 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 + ++ IG V+D +VV + + + T +S ++ KS++E G + + Sbjct: 393 LTLFGMVLAIGLLVDDAIVVVENV--ERLITTEHLSPKEAARKSMDEITGALIGIAAVLS 450 Query: 781 ISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 LPMA +GGS F+I + +V++ + ++ + + Sbjct: 451 AVFLPMAFFGGSTGVIYRQFSITIVSAMVLSVAVALILTPAL 492 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 63/204 (30%), Gaps = 6/204 (2%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G + ++G+ + + Q PG S + Sbjct: 792 VRGATGTMAPFTAFSSFDWHQGPMQLTRYNGQPSMEILGQAAPGVSSGAAIKAMEEMQAK 851 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + ++I + + + W + + + L Sbjct: 852 LPPGTRLDWTGLSYEEQLSGGQAPALYGLSLLIVFLCLA---ALYESWSVPISVMLVVPL 908 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L L G+ ++ ++T IG S + +++ + + M+ +S D Sbjct: 909 GVVGALLAAMLTGLNNDIYLQVGLITTIGVSAKNAILIVEFAEEKMRE---GLSAFDAAI 965 Query: 763 KSINETLGRSVYTSMAAFISVLPM 786 ++ L + TS+A V P+ Sbjct: 966 EAAKLRLRPILMTSLAFVFGVFPL 989 >gi|157369369|ref|YP_001477358.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Serratia proteamaculans 568] gi|157321133|gb|ABV40230.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Serratia proteamaculans 568] Length = 1048 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 64/574 (11%), Positives = 161/574 (28%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIVMLAGVLSIM-----KLPIAQYPTIAPPA-------------VSISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQIIEQNMNGIDNLMYMSSTSDSSGSVTITLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ L ++++ D + + + D I S Sbjct: 110 KLSLATPLLPQEVQQQGLKVEKSSSSFLMVAGFISDDPSMTQDDIADYVASNIKDPISRS 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L TT ++ NN G Sbjct: 170 SGVGEVQLFGAQ-YAMRVWLDPNKLNNFQLTTTDVTSAITEQNNQIAAGQLGGMPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + +I + Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGKILLKVNADGSQVRLSDVAHIERGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + ++ + Sbjct: 276 AVTARYNGKPAAGLGIKLATGANALNTAQGVKDALTKMQPFFPQGMKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ + +K + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-----LKPVAKGDHGVKTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F ++ + L + Sbjct: 511 FFGWFNRMFEKSTHHYTDSVANILRSTGRYLVIY 544 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 87/243 (35%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V LS V + ++ + L +++ + ++ K+ Sbjct: 258 SQVRLSDVAHIERGAESYAVTARYNGKPAAGLGIKLATGANALNTAQGVKDALTKMQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + I + + +++ + + L + + + Sbjct: 318 PQGMKVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 EQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 60.9 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 76/249 (30%), Gaps = 10/249 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + + + V S S + N L + Sbjct: 777 PFRMLPEDINKWFVRGTSGQMVPFSAFSSAKWEYGSPRLERYNGLPSMEILGQATPGKST 836 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + E+ K + I T + + + + I + L + Sbjct: 837 GEAMNLMEELASKLPSGIGYDWTGMSYQERLSGNQAP----ALYAISI-LVVFLCLAALY 891 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W + L L + L + G+ ++ +LT IG S + +++ + + Sbjct: 892 ESWSIPFSVMLVLPLGVIGALLAATMRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDL 951 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 M + +++ L + TS+A + VLP+ + G + + G Sbjct: 952 MDKEGKG--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGG 1009 Query: 805 IVVAASSSI 813 ++ A +I Sbjct: 1010 MITATVLAI 1018 >gi|222056530|ref|YP_002538892.1| protein-export membrane protein SecF [Geobacter sp. FRC-32] gi|221565819|gb|ACM21791.1| protein-export membrane protein SecF [Geobacter sp. FRC-32] Length = 299 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 139/286 (48%), Gaps = 5/286 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I + F I + + I + N GIDF GG + + + P + VRS+L Sbjct: 12 IGMRKISFAISAIIAIIGLIGIIQIARGAANMGIDFSGGTAMQLKFSAPFTMESVRSSLA 71 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 I + Q L++++ G+ + K ++++ +GP Sbjct: 72 KNGIENAELQEIKEGNKLLIKMRKSTGNVADSVQEA----LKKDFAANPFAVESSTEIGP 127 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 I +L + +V V IS + +++YI RF + F +GA+ + D+ F + E N Sbjct: 128 SIGDKLRKDTLVAVAISMLGIILYIAWRFDYKFGIGAVVATMHDVLAIFAIFFVLNKEVN 187 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L V A LT+ GYS+ D VVV+DR+R+NM + ++SINE + R++ TS+ Sbjct: 188 LLLVTAALTIAGYSLTDTVVVFDRIRENMHKNLKEH-MFTIFNQSINEVMSRTIITSLTT 246 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F++ + + ++GG VI FA + G+VVA SSIF+A+PI+ Sbjct: 247 FLAAISLLLFGGEVIHDFAFALVVGVVVATYSSIFVASPIVALWEK 292 >gi|296274549|ref|YP_003657180.1| hydrophobe/amphiphile efflux transporter [Arcobacter nitrofigilis DSM 7299] gi|296098723|gb|ADG94673.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Arcobacter nitrofigilis DSM 7299] Length = 1042 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 66/575 (11%), Positives = 161/575 (28%), Gaps = 39/575 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I GLL + ++++P +P +++ Sbjct: 9 RPVFSAVVSILIFLAGLLSMI-----NLPIEQYPKVVPP-------------QIIVTTSY 50 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + + + + + I + F ++ V Sbjct: 51 PGASAETISKTVAAPLEEKINGAKDMIYMNSLAADSGVVSINVYFEVGTNADDAKIDVNN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q +KL + +K + T + + + S + D + Sbjct: 111 RVQSALAKLPAEVQKQGVTVTERSPSLLQVISFYSPDNSKNTTYLSNYALMNIADNLKRI 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L TT + N+ F + + Sbjct: 171 KGVGDATIFGAKDYAIRVWVDPEKLSNFGLTTTDLINAIKEQNHQYAAGKFAAEPIANKQ 230 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + +S + + + + Sbjct: 231 MFTYTLRTPPRLS-------------TPTEFGNIVIRANKDGSALLLKDVATVELGASSY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L ++ + T + + + Sbjct: 278 NLNSKLNGLPSIPIGIFLQSGANAIDTAKAVKETLLKASEKFPAGVSYRIPYSSTDFIQV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV+ ++F+ + + L+ ++ ++++ A + LLG ++ L ++ Sbjct: 338 SIKEVAKTFVEAIILVVAIIFLFLQNWRATLIPVLAVPVSIVGAFAGMYLLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474 G+VL IG+ VD I+V E + + + + A I I Sbjct: 398 FGLVLAIGIVVDDAIIVIENVERHLSEGMAPKEAAFKAMKEVSGALVAIILVLSAVFIPV 457 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 + G + FAIT+ +SI+IS F A+++ ++ +++ +K Sbjct: 458 AFISGLSGVMYKQFAITIVVSIVISGFVALTLTPSLCAVLLKDGHVKPQGFFKWFNNMFD 517 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569 +M + I + + + Sbjct: 518 KFTSGYSYMVKKTIRYSILSFLLFGGLIFITYNMY 552 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 79/212 (37%), Gaps = 10/212 (4%) Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683 + A L +K V ++ +E+ + + +I+ + ++ Sbjct: 301 AIDTAKAVKETLLKASEKFPAGVSYRIPYSSTDFIQVSIKEVAKTFVEAIILVVAIIFLF 360 Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 + W L + + + I L G NL + ++ IG V+D ++V + Sbjct: 361 LQ---NWRATLIPVLAVPVSIVGAFAGMYLLGFSINLLTLFGLVLAIGIVVDDAIIVIEN 417 Query: 744 MRKNMKLYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 + + + ++ ++ K++ E L + A FI V ++ G + FAI Sbjct: 418 V---ERHLSEGMAPKEAAFKAMKEVSGALVAIILVLSAVFIPVAFISGLSGVMYKQFAIT 474 Query: 801 MAFGIVVAASSSIFIAAPI-LLFIYDWRAKNA 831 + IV++ ++ + + + + D K Sbjct: 475 IVVSIVISGFVALTLTPSLCAVLLKDGHVKPQ 506 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 69/182 (37%), Gaps = 7/182 (3%) Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713 + + + K + I + + + + ++ +W + + + + + + Sbjct: 856 WVGTAYQEKRISSKSYLAFIFGILFLYLILAAQYERWMMPISVVMAIPFGVFGAVVATMM 915 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G+E ++ +L LIG S + +++ + M+ S D + + + Sbjct: 916 RGLENDIYFQVGILVLIGLSAKNAILIVEFA---MQQRKEGKSIYDAAINAAKLRIRPII 972 Query: 774 YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 TS+A + V+P+A+ G + + + G++ A +I +F+ K Sbjct: 973 MTSLAFMLGVVPLAISTGAGAASRHAIGTGVIGGMLTATIIAIVFIPLFYIFVSKLSEKK 1032 Query: 831 AR 832 + Sbjct: 1033 HK 1034 >gi|313497204|gb|ADR58570.1| SecD [Pseudomonas putida BIRD-1] Length = 620 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 166/525 (31%), Positives = 271/525 (51%), Gaps = 41/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD D + +++Y E+++ L+KE + Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMAARMKVYEGEVKTLLRKERV 165 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q I L FAD +E + D + + + Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFN--------DFELTTTERNELAVLRLA 217 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F + K F G VE + I+G + A A+FD Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAAVERGLIITGDQVTDAQASFDEHG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 P V+I D G TR N+G+ +AV+ + + Sbjct: 335 SPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQTVGGVEKDVAVQSFVE 394 Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+I +Y +G++A ++ N++L LAL+SLLGATLTLP IAG Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE SV ++ GF+RAYS I D+N+T L+ +LF Sbjct: 515 IVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G G V+GFA+TM L I SMFTA+ + RA++ + +K + Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKLW 619 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 89/250 (35%), Gaps = 5/250 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V + + + + ++ L G + + + Sbjct: 372 VTRYVKQTVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I ++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-AFGVLATIALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ + +S + I Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820 + N V ++ + + G + FA+ M+ GI + +++ + ++ Sbjct: 548 HEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVN 607 Query: 821 LFIYDWRAKN 830 L K Sbjct: 608 LTCGGRDIKK 617 Score = 48.5 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 17/121 (14%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W L ++ +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117 D + + L ++G G+ + ++++ + A + Sbjct: 51 LDRVSKALVDAKIAVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQT 110 Query: 118 F 118 Sbjct: 111 T 111 >gi|14331104|emb|CAC41009.1| AcrB protein [Klebsiella pneumoniae] Length = 1048 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 68/689 (9%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLSIL-----KLPVAQYPTIAPPA-------------ISISAMY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117 +Q + + ++ + ITL+F + +V Sbjct: 50 PGADPQTVQNTVTQVIEQNMNGIDHLMYMSSNGDSTGTVNITLTFESGTDPDIAHVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ + +++ + + S + D I + Sbjct: 110 KLALATPLLPQEVQQQGISVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISALKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTNTE-------------EFGNILLKVNQDGSQVRLRDVAKIELGGESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFFPSGMKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +++ + S + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGSHGATTGFFGWF 515 Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + V I+ + + + +G Sbjct: 516 NRMFDKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAWLFVRLPSSFLPDEDQGVFLSMA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + ++ + + E F V G +K Sbjct: 576 QLPAGATQERTQKVLDEMTNYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ ++ + Sbjct: 636 RPGEENKVEAITARAMGYFSQIKDAMVFA 664 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + D+ + + L +++ + K+ Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PSGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + L + + G L + IS I + + + ++ W Sbjct: 838 EAMALMEELAGKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L G+ ++ +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + V+P+ + G + + G+V A Sbjct: 958 G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|253687417|ref|YP_003016607.1| protein-export membrane protein SecF [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753995|gb|ACT12071.1| protein-export membrane protein SecF [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 324 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 169/301 (56%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR IS L I SI ++ G N+G+DF GG + + + Sbjct: 7 YNIEQLNHGRKVYDFMRWDTLAFVISGLLIIASIAIMGVRGFNWGLDFTGGTVIEINLEK 66 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P+DL V+RS+LE+ + QNF ++ +VR+ G S + +++K Sbjct: 67 PIDLDVLRSSLETSGFSEPQVQNFGSSRDVMVRMPPVSG-SENEALGNKVLKVVNDTFQQ 125 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+LIYI RF+W ALG++ L D+ T Sbjct: 126 HATVKRIEFVGPSVGSDLAQAGALALLSALIAILIYIGFRFEWRLALGSVLALGHDVIIT 185 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+NDK+VV DR+R+N + + ++ + S+ + Sbjct: 186 MGLLSLFSIEIDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKVRRGTPY-EITNISLTQ 244 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS ++ + V+GG+++ F++ M G+++ SSI++++ + L + R Sbjct: 245 TLHRTIITSATTLAMIVILMVFGGALLHGFSLTMFIGVIIGTISSIYVSSALALKLGMKR 304 Query: 828 A 828 Sbjct: 305 E 305 >gi|117919468|ref|YP_868660.1| preprotein translocase subunit SecD [Shewanella sp. ANA-3] gi|117611800|gb|ABK47254.1| protein-export membrane protein SecD [Shewanella sp. ANA-3] Length = 624 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 166/533 (31%), Positives = 279/533 (52%), Gaps = 37/533 (6%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 + +++ P L +++ PS + I LGLDLRGG +L+VD Sbjct: 105 TLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQAD 164 Query: 72 MYSDELRSFLKKEGIGVFSMRQIQNK------ITLSFADSRFK-ENIADKVTLFLQGVNS 124 + LR FL+++ I S+R + I ++F D+ N + F+Q Sbjct: 165 ALVESLRLFLREQQIRGASVRIDSTRDDAGLQIEIAFNDAAQSTNNARSTIRQFMQQ--- 221 Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184 +T + + + L+Q ++ + ++Q+++I+R RI+++GI+E+ +QR Sbjct: 222 -----SYPTWQLTNADNGLVVKLAQEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQ 276 Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244 G HRI I+LPG QDP+ + ++G TA ++F +V + L+D GN V Sbjct: 277 GEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAQVLKDKSGNPVYVA 331 Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304 + G H+ A AN V+I D +G ++ E +R NIGKP+A Sbjct: 332 RTPVLGGDHIVDARANIGEMGM-AEVNIHLDRIGGQKMSEFSRANIGKPMATSYSEYSRD 390 Query: 305 AP------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 Q+ + +I+G T + A LA +LRAGS+ + IVEER + Sbjct: 391 EQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTI 450 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-AT 411 G LG+++I G A+ G+ + +LFM + Y + G VA+ ++ N+++ LL+L+ A Sbjct: 451 GPTLGAENIQNGFAALGLGMGITLLFMALWYRRLGWVANVALIANMVILFGLLALIPGAV 510 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 LTLP IAG+VL +G+AVD+N+L+ ERI+++ ++ +S ++D GF A+STIFD+N T + Sbjct: 511 LTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTM 570 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 I VVL+ G G ++GFA+T+GL +L SMFT I RA++ + + + Sbjct: 571 ITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVR 623 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 93/260 (35%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G + + S + + + ++ L G Q Sbjct: 365 GQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 424 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I+ G + + L+++ + ++ Sbjct: 425 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALWYR-R 483 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R++ +K Sbjct: 484 LGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 543 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID + + I+ + + G I FA+ + G++ + Sbjct: 544 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 600 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + ++ +Y A+ Sbjct: 601 TGIFASRALINLVYGRDARR 620 >gi|157371935|ref|YP_001479924.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Serratia proteamaculans 568] gi|157323699|gb|ABV42796.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Serratia proteamaculans 568] Length = 1033 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 71/680 (10%), Positives = 181/680 (26%), Gaps = 40/680 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L + + + ++P+ P + Sbjct: 8 RPIFAWVIAIIVMMAGALSIM-----KLPIAQYPTIAPPAV---------SISATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L + +TL+FA + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMNGLDGLMYMSSNSDAAGNATVTLTFATGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + ++++ D + + + D I + Sbjct: 114 AMPLLPQTVQDQGINVQKASSSFLMVAAFTSDSSAMTQADLADYAVANIKDPISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 Q + DP++L T+ + NN G G Sbjct: 174 QVQLFGAQ-YAMRIWLDPNKLDNYQLTSEDVVRAIKAQNNQIAGGQLGALPAVPGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + +S + + + I Sbjct: 233 SIIAQTRLS-------------SPQQFGNILLRVNQDGSQVHLRDVARIALGSENYTTSA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T L + S Sbjct: 280 EYNGKPAAGLGVKLATGANALDTANAVKAEIGRLEPYFPAGMHVVYPYDTTPFVKISIGE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLIEAIILVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAILAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + ++ + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMAQIQGALVGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530 GG R F++T+ ++++S+ A+ + A+ + + + + Sbjct: 460 GGSTGAIYRQFSVTIVSAMVLSVLVAMILTPALCVTLLKPGVHAPKTGFFAWFNRLFERS 519 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I + ++ ++ + + +G + Sbjct: 520 TQHYQGSIGNILNHTGRMLLIYLLIVIGMALLFIRLPTAFLPDEDQGVFMNMIQLPAGAT 579 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + L + ++ + + F V G+ +K + Sbjct: 580 QQRTEAVLGQVTHYYLNKEKANVNSVFTVAGFGFNGNGQNNGLAFVSLKDWSQRPGEKNK 639 Query: 651 IQNTEIVGPKISRELIRKGI 670 ++ I++GI Sbjct: 640 VEAIIKRANMAFAHTIKQGI 659 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 85/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + S + L +++ ++ ++ Sbjct: 258 SQVHLRDVARIALGSENYTTSAEYNGKPAAGLGVKLATGANALDTANAVKAEIGRLEPYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + I + + +++ + L + + + Sbjct: 318 PAGMHVVYPYDTTPFVKISIGEVVKTLIEAIILVFLVMYLFLQNLRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V +M +PMA +GGS F++ + +V++ ++ + + + Sbjct: 436 AQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSVTIVSAMVLSVLVAMILTPALCVT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 58.9 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 + + L + G L + IS + + + + ++ W Sbjct: 836 QAMMLMEKLAAKLPKGIGYDWTGMSYQERLSGNQAPALYAISLVVVFLCLAALYESWSIP 895 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L L G+ ++ +LT IG S + +++ + + M+ Sbjct: 896 FAVMLVVPLGVVGALLGATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 955 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 ++ L + TS+A + VLP+ + G + + FG++ A Sbjct: 956 --PLIAATLEATRMRLRPILMTSLAFILGVLPLVLSSGAGSGAQNAVGTGVMFGMISATL 1013 Query: 811 SSI 813 +I Sbjct: 1014 LAI 1016 >gi|323187527|gb|EFZ72836.1| acrB protein [Escherichia coli RN587/1] Length = 1035 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 Q R + + L+ + + ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 41.2 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 72/245 (29%), Gaps = 9/245 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIY 824 + + Sbjct: 1020 FVLVK 1024 >gi|332981506|ref|YP_004462947.1| protein translocase subunit secF [Mahella australiensis 50-1 BON] gi|332699184|gb|AEE96125.1| protein translocase subunit secF [Mahella australiensis 50-1 BON] Length = 297 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 152/288 (52%), Gaps = 3/288 (1%) Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604 R+ ISI + I + GLN+GIDF+GG + + + D+ +R+ +++ I Sbjct: 6 RRWIWYSISIAIIVVGIAFMLIRGLNFGIDFRGGTLMEINIGKSYDVEDIRAIIKAHNID 65 Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664 + D + L+R+ P D Q ++L +K+K + + E VGP + E Sbjct: 66 AYVSEAGDNNQEVLIRIASVPNDDEVQAQILNDMKEKYGIDDS--AVLSLEKVGPTVGGE 123 Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 L R I + I+ + MLIYIWIRF+ F + AI L+ D L A+ + N VA Sbjct: 124 LTRNAIYAIAIACVLMLIYIWIRFEIRFGVAAIIALVHDALIMLAVVAITNTQINTPFVA 183 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 AVLT++GYS+ND +VV+DR+R+N + ++ +L D SI +TL RS+ T++ ++ Sbjct: 184 AVLTIVGYSINDTIVVFDRIRENRRKLGKKKMNPFELADMSIEQTLARSINTTLTTLFTI 243 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + ++G I FA+P+ GIV A SSIFIA+PI A Sbjct: 244 TALYIFGVPSIKEFALPIIVGIVSGAYSSIFIASPIWATWTQRDAMEK 291 >gi|212637600|ref|YP_002314125.1| AcrB/AcrD/AcrF family protein [Shewanella piezotolerans WP3] gi|212559084|gb|ACJ31538.1| AcrB/AcrD/AcrF family protein [Shewanella piezotolerans WP3] Length = 1049 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 72/687 (10%), Positives = 185/687 (26%), Gaps = 39/687 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L L + ++P+ P + + V Sbjct: 8 RPIFAWVIAIIVMLAGVLSIL-----GLPVSQYPNIAPPSVV---------ISAVYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + ++ + L + +ITL+F + +V LQ Sbjct: 54 AKTMEDSVTQVIEQRMTGLDHLRYISSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + + +++ + + S + D + Sbjct: 114 AMPLLPQEVQAQGVNVAKSSAGFLMVVGFVSEDGSLDKNDISDYVGSNIQDPLSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L Q T+ + N G Sbjct: 174 TIELFGAQ-YAMRIWLDPLKLTQYNLTSMDIISSIREQNAQVSAGQLGGSPSVAGQELNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + I + + F + Sbjct: 233 TVSAQSRL-------------QTADQFKKIIIKADPSGAKVFLEDVARVELGAESYAVES 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T E ++ + S Sbjct: 280 FYNGKPAAGIGIQLATGANALATAEGVRAKIEEMQPFFPEGMEIVYPYDTTPFVEKSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +++++ + + L+ ++ + ++ T A+LS G ++ ++ +V Sbjct: 340 VVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILSAAGFSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + +T V + F Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPIEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLSRFF 532 G R F+IT+ ++ +S+ AI + A+ +++ K+ +R F Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVMVAIILTPALCATMLKPIAKGEGHKKTGFFGWFNRKF 519 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DL 591 + A G +++ + + + F G+L + + + Sbjct: 520 DALTSRYEDSVAAMIKRAGRTMMVYLAITVAVGWIFMRMPTAFLPDEDQGILFTQAILPV 579 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + + +++ F N + + + + + Sbjct: 580 NSTQEATQNVLEDVTDFYLNAEGDNVKSVFSVSGFSFAGNGQNMGIAFVGLKDWSERQNP 639 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI 678 + + + + + + Sbjct: 640 GQDVQSVAGRAMGMFMQMKEAFVFAFV 666 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 81/240 (33%), Gaps = 6/240 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + V L V + + + +++A + +++ Sbjct: 255 PSGAKVFLEDVARVELGAESYAVESFYNGKPAAGIGIQLATGANALATAEGVRAKIEEMQ 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + ++ + + + + +++ + + L + + Sbjct: 315 PFFPEGMEIVYPYDTTPFVEKSIEGVVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T + G N + A++ IG V+D +VV + + + +S + Sbjct: 375 VLLGTFAILSAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPIEATK 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+++ G V + +PMA GS F+I + + ++ +I + + Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVMVAIILTPAL 492 Score = 63.9 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 75/246 (30%), Gaps = 13/246 (5%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + V S + + N N + Sbjct: 777 YRMQPEDMDSWYVRNSQGEMVPFSAFATGSWEYGSPRLERFNGLPAMNIQGGVAPGFSTG 836 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + +MVKK + E ++ +S + + + + + Sbjct: 837 EAMNIIEDMVKKLPPGFGVEWNGLSYEERLSGNQAPMLY------ALSIVVVFLVLAALY 890 Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + W I + L I L G+ ++ +LT +G + + +++ + ++ Sbjct: 891 ESWSVPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 Y + ++ L + TS+A + V+P+A+ G + + G Sbjct: 951 ---YEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGG 1007 Query: 805 IVVAAS 810 ++ + Sbjct: 1008 MMSSTF 1013 >gi|186475247|ref|YP_001856717.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia phymatum STM815] gi|184191706|gb|ACC69671.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia phymatum STM815] Length = 1064 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 67/574 (11%), Positives = 153/574 (26%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL + ++P+ P + + Sbjct: 8 RPIFAWVIAIILMLAGLASIF-----TLPVAQYPTIAPPA-------------VQISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 ++ + + + S + ITL+FA + +V Sbjct: 50 PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L ++ T +++ + + + D + Sbjct: 110 KLQLATPLLPQVVQQLGTKVTKSSSSFLLVMAFVSTDGSMTKYDLANYVASNVQDPVSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + D +L T + N G G Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDAHKLTNFGLTPVDVETALQAQNVQVAGGSLGGTPSIPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + + ++ + + + I Sbjct: 229 LLQATISEATLLT-------------TPEQFGNVLLKVNQDGSQVRIKDVARIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + L + Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATAKAVRDKIDQLSKYFPHGLVVKYPYDTTPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A++S +G ++ + S+ Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMSAVGFSINVLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + S + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMSEEGLSPKDATRKAMDQITGALIGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F++T+ ++++S+ A+ + A+ I +K I Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F R+R S L + Sbjct: 511 FFGWFNKTFDRSRDKYHSGVHHVIKRSGRWLIIY 544 Score = 79.3 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V + + + +++A + + ++++ Sbjct: 258 SQVRIKDVARIELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRDKIDQLSKYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + R I + + ++ + + + +++ + L + + + Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + G N+ ++ ++ IG V+D +VV + + + +S +D K++ Sbjct: 378 GTFAIMSAVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKDATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G + ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 DQITGALIGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492 Score = 74.3 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 8/221 (3%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + ++G ++ Q PG S Q + + Sbjct: 816 ERYNGISAVEIQGQAAPGKSTGQAMTAMEAIAAKLPAGIGYEWTGLSFQERQSGSQAPIL 875 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + +++ + + + W I + L + L L G+E ++ +LT Sbjct: 876 YGISILVVFLCLA---ALYESWSIPFSVIMVVPLGVLGALLAATLRGLENDVFFQVGLLT 932 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 +G S + +++ + R+ + + ++ L + TS+A + VLP+A+ Sbjct: 933 TVGLSAKNAILIVEFARE--LQQGEGMGPVEAALEAARLRLRPILMTSLAFILGVLPLAI 990 Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 G + + + G++ A +IF+ + I Sbjct: 991 SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 Score = 56.2 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 68/541 (12%), Positives = 138/541 (25%), Gaps = 28/541 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I +I +GLL + P L G + Sbjct: 536 RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + L + S G Q + + D +++ KV + Sbjct: 590 LKDISDWLLNDEKSIVESTFTVNGFSFAGRGQNSGLVFVRMKDYAERQHANQKVQALVGR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 K ++ I + + + D + E + +Q+ + Sbjct: 650 -MYMHFAGYKNAVVFPVNPPSIPELGTASGFDFELQDRAGLGHEKLMAARNQLLGMAAKD 708 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 L R Q + +S + S V D+D Sbjct: 709 PTLAQVRPNGLNDTPQFKVSIDHEKAAAQGVSLSTIDQTFSIAWASAYVNNFLDTDSRI- 767 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 KV + T + S A + T + + Sbjct: 768 ---KKVYLQADAPFRMTPENLSDWYVRNTAGSMVPFSAFASGQWTYGSPKLERYNGISAV 824 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T A G L+ E ++ Sbjct: 825 EIQGQAAPGKSTGQA------MTAMEAIAAKLPAGIGYEWTGLSFQERQSGSQA------ 872 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 I +V + L + + L V+ L +L G + G++ Sbjct: 873 -PILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVLGALLAATLRGLENDVFFQVGLL 931 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 +GL+ + IL+ E RE + + + I +++ ++ + L Sbjct: 932 TTVGLSAKNAILIVEFARELQQGEGMGPVEAALEAARLRLRPILMTSLAFILGVLPLAIS 991 Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G + + +L + F AI ++ + I + D + + + Sbjct: 992 NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAKFTGEKEDPDEAMKHYNEHHP 1051 Query: 538 I 538 Sbjct: 1052 H 1052 >gi|158316897|ref|YP_001509405.1| preprotein translocase subunit SecF [Frankia sp. EAN1pec] gi|158112302|gb|ABW14499.1| protein-export membrane protein SecF [Frankia sp. EAN1pec] Length = 417 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 130/309 (42%), Gaps = 9/309 (2%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L ++ F+ R +S + + G + GI+F GG +N + Sbjct: 6 RLYRSEFSVDFVGRRRVWYIVSGVLITICALSMIFRGFSLGIEFSGGAVFQFPSNGGT-V 64 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 V S L I E + R+Q + + + P Sbjct: 65 EQVDSLLSKNGIDASDSVVQQLETSRQFRVQTPTLTDQQTEALQKDFATRFKVTNPD-EN 123 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 VG + K I G+I+ + ++IY+ IRF+W A A+ LI D+ T+G + Sbjct: 124 IAVSTVGSSWGSTITSKAIQGLIVFLVLVMIYLSIRFEWKMAAAAMAALIHDLIVTMGVY 183 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769 +L G E + V AVLT++G+S+ D VVV+DR+R+N T ++ + + ++NETL Sbjct: 184 SLVGFEVTPSTVIAVLTILGFSLYDTVVVFDRVRENTAGMATSSRRTYAEATNDALNETL 243 Query: 770 GRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 RS+ TS+ A I V + G + A+ GI SS+F A P+L+ + Sbjct: 244 VRSLNTSLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPLLVDLK 303 Query: 825 DWRAKNARI 833 + Sbjct: 304 RGEPAVKAL 312 >gi|91977246|ref|YP_569905.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris BisB5] gi|91683702|gb|ABE40004.1| protein translocase subunit secF [Rhodopseudomonas palustris BisB5] Length = 369 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 113/336 (33%), Positives = 191/336 (56%), Gaps = 17/336 (5%) Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550 ++ + + ++ + ++ + D F + R Sbjct: 1 MTSTQWILIGLGVLIVALTIVSIMDWLPSLRIVP-----------DDTHFDFTQFRRISF 49 Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRSNLESLQIGDISFQ 609 IS + SI +I L FTHGLN+GIDFKGG L V A+ D+ +R L L +GD+ Q Sbjct: 50 PISAVLSIAAITLFFTHGLNFGIDFKGGTLLEVRAHSGTADIPGMRETLGKLGLGDVQLQ 109 Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669 F G L+R+ QPG AQ ++ V+ + + E+VGP++S EL+ G Sbjct: 110 QFGGPAEVLIRVAEQPGGDAAQQEAVQKVRGAL---GNSVDYRRVEVVGPRVSSELLAYG 166 Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 ++G++++ + +L+Y+W RF+W FALGA+ + DI T+GF ++ ++F+LT++AA+LT+ Sbjct: 167 MLGLMLAILGILVYLWFRFEWQFALGAMIANVHDIVLTIGFMSISQVDFDLTSIAALLTI 226 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 +GYS+ND VV+YDR+R+ ++ Y + L+++SIN TL RS+ T + +++ + ++ Sbjct: 227 LGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLSRSIITHVTVTLALFALLLF 285 Query: 790 GGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824 GG I SF M FG ++V +SIFIAAPIL+++ Sbjct: 286 GGHAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 321 >gi|238752050|ref|ZP_04613534.1| Acriflavine resistance protein B [Yersinia rohdei ATCC 43380] gi|238709750|gb|EEQ01984.1| Acriflavine resistance protein B [Yersinia rohdei ATCC 43380] Length = 1041 Score = 197 bits (500), Expect = 7e-48, Method: Composition-based stats. Identities = 69/551 (12%), Positives = 154/551 (27%), Gaps = 46/551 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P ++ + Sbjct: 8 RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S ITL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + ++++ + + + D + Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT + N+ G D+ Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDVVTAIQSQNSQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + Sbjct: 229 ALNATINAQSQL-------------QTPEQFRDITLRVNQDGSLVTLGEVAKVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E A L + Sbjct: 276 DYLSRFNGQAASGMSIKLASGANELQTDELVKARIAELTPFFPHGLEAKIAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ Sbjct: 336 SIKDVVKTLLEAILLVFFVMYLFLQNFRATLIPTIAVPVVLLGTFAILSIFGFSINTLTL 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + + + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + A+ +K I Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIKAGHHQAKGG 510 Query: 534 IPDCIAIQFMR 544 F R Sbjct: 511 FFGWFNRTFDR 521 Score = 87.8 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 87/235 (37%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + +++ ++T P Sbjct: 260 VTLGEVAKVEMGAEKYDYLSRFNGQAASGMSIKLASGANELQTDELVKARIAELTPFFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + ++ + + + +++ + + L + + + T Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFFVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 ++FG N + A++ IG V+D +VV + + + + R+ KS+ + Sbjct: 380 FAILSIFGFSINTLTLFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ +PMA +GG+ F+I + +V++ ++ + + Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ + L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMA+ G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029 >gi|148546109|ref|YP_001266211.1| preprotein translocase subunit SecD [Pseudomonas putida F1] gi|148510167|gb|ABQ77027.1| protein-export membrane protein SecD [Pseudomonas putida F1] Length = 620 Score = 197 bits (500), Expect = 7e-48, Method: Composition-based stats. Identities = 166/525 (31%), Positives = 273/525 (52%), Gaps = 41/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD D + +++Y E+++ L+KE + Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERV 165 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q I L FAD +E + D + + Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFN--------DFDLTTTDRNELAVLRLA 217 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F + K F G VE + I+G + A A+FD Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAAVERGLIITGDQVTDAQASFDEHG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+I D G TR N+G+ +AV+ + + Sbjct: 335 RPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQTVGGVEKDVAVQSFVE 394 Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+I +Y +G++A ++ N++L LAL+SLLGATLTLP IAG Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRGFGVIATIALAGNMVLLLALMSLLGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE + SV ++ GF+RAY+ I D+N+T+L+ +LF Sbjct: 515 IVLTMGMAVDANVLIFSRIREELKAGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G G V+GFA+TM L I SMFTA+ + RAM+ + +K + Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVNLTCGGRDIKKLW 619 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 91/250 (36%), Gaps = 5/250 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V + + + + ++ L G + + + Sbjct: 372 VTRYVKQTVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I ++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-GFGVIATIALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ +K +S + I Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELKA---GMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820 + N + ++ + + + G + FA+ M+ GI + +++ + ++ Sbjct: 548 HEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVN 607 Query: 821 LFIYDWRAKN 830 L K Sbjct: 608 LTCGGRDIKK 617 Score = 48.9 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 35/385 (9%), Positives = 94/385 (24%), Gaps = 28/385 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W L ++ +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117 D + + L ++G G+ + ++++ + A + Sbjct: 51 LDRVSKALVDAKIAVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQT 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + ++ + A+ M++ + + Sbjct: 111 T--------PQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRK 162 Query: 178 ESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234 E R I++ + + R L+ N + + Sbjct: 163 ERVRYRSLPQQDGGIMLGFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAK 222 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 ++ +Y ++ + +N + I + G + E R Sbjct: 223 VAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 282 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 G A + + I + + + N+ Sbjct: 283 LEFRFGAEPGASKATTEVFEFREGGRSAAVERGLIITGDQVTDAQASFDEHGRPQVNIRL 342 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFM 379 D + G + V+F+ Sbjct: 343 DGHGGELMSRATRSNVGRSMAVIFI 367 >gi|187250972|ref|YP_001875454.1| protein-export membrane protein SecF [Elusimicrobium minutum Pei191] gi|186971132|gb|ACC98117.1| Protein-export membrane protein SecF [Elusimicrobium minutum Pei191] Length = 321 Score = 197 bits (500), Expect = 7e-48, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 158/303 (52%), Gaps = 8/303 (2%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + F++ R + +S + I + + T GLN GIDFKGG + V + Sbjct: 1 MMNLIPKTNFDFLKIRKYFYAVSAIILIAGLICILTRGLNMGIDFKGGTMVQVQFTESIT 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VRS +E + Q++ G+ ++++++ G V V+ +T T Sbjct: 61 IDQVRSAVEK---YNPEIQSYVGKNTYMIKIK---GSQENVNEVRSDVETSLTAAKLKFT 114 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 + T+ VGP + ++L + + + +S + M++YI RF+ + + LI D + Sbjct: 115 VVATDFVGPTVGKDLGERALWALALSLVFMVLYIAFRFQNIIWGTAGVIALIHDAFFMVA 174 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 FA EF+L VAA+LT +GYS+ND +V++DRMR+N+K SF +++++S+NETL Sbjct: 175 AFAFLQKEFDLVIVAALLTAVGYSINDNIVIFDRMRENIKENPK-ESFYNIVNRSLNETL 233 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R+V T I ++ + +GG V+ +F++ M G++V S++FIA PI+ Sbjct: 234 SRTVITGSTVLIVLVIIYFFGGEVLKNFSLIMLIGVIVGTYSTLFIATPIVYDWAKDSDN 293 Query: 830 NAR 832 A+ Sbjct: 294 FAK 296 >gi|323173475|gb|EFZ59104.1| inner membrane protein [Escherichia coli LT-68] Length = 1034 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 69/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLVELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPYSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLVELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|301017624|ref|ZP_07182298.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS 69-1] gi|300400118|gb|EFJ83656.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS 69-1] Length = 1035 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 Q R + + L+ + + ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 41.6 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTLFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYD 825 + + Sbjct: 1020 FVLVKR 1025 >gi|329905134|ref|ZP_08274053.1| Protein-export membrane protein SecD [Oxalobacteraceae bacterium IMCC9480] gi|327547694|gb|EGF32479.1| Protein-export membrane protein SecD [Oxalobacteraceae bacterium IMCC9480] Length = 624 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 154/500 (30%), Positives = 264/500 (52%), Gaps = 20/500 (4%) Query: 34 RFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90 P + + LGLDLRGG H +L+VD + LQ +RS L+ + I Sbjct: 117 NTPHWLQSLHAFPMYLGLDLRGGVHFLLQVDTRAILAKRLQGLQSGVRSTLRDKNIRHTG 176 Query: 91 MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150 + + N I +++ D ++ + + + + +D ++ I L + Sbjct: 177 ISRNGNAIEVAYRDVATRDQSKEILASQMPDILLTDGLDVANP--------KLIITLKEA 228 Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210 + A+ Q++ + +R++++G++E IQR G+ RI++QLPG QD SR + ++G A Sbjct: 229 ALKTAQDDAVNQNIATLGRRVNELGVAEPIIQRQGADRIVVQLPGVQDVSRAKDIIGRQA 288 Query: 211 KMSFHKVLPN-----NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 + V F + G ++ + I+G +++ A+A+FD Sbjct: 289 TLEVRMVDETVTRGTEETAAVPFNSELFKVGKGVPVVLYKEPIITGDYISSASASFDQNQ 348 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQAIPSGKAQISGN 322 +P V I + G R+ + TR +GK +A+VL + + + + QI+G Sbjct: 349 -QPAVGIDLNGDGGRKMRDATRGQVGKSMAIVLFEKGKGEVLTVATIRDELGSRFQITGM 407 Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382 + E AG L+ +LRAGSL ++ VEER +G LG+++I KG + G I +FM++ Sbjct: 408 GSPEAAGDLSLLLRAGSLAAPMDFVEERTIGPQLGAENIAKGFNSTKYGFAAIAVFMVIY 467 Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442 Y +G+ + ++ +N++L +ALLS L ATLTLP IA I L +G+A+D+N+L+NERIREE Sbjct: 468 YMLFGVFSVVALSVNLLLLVALLSTLQATLTLPGIAAIALTLGMAIDANVLINERIREEL 527 Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502 R S ++ +GF RA++TI DSN+T +IA + L FG G +RGFA+ L IL S+F+ Sbjct: 528 RNGNSPQAAISIGFDRAWATIIDSNVTTMIAGLALLIFGSGPIRGFAVVHCLGILTSIFS 587 Query: 503 AISIVRAMMIFIIRYKKMKS 522 ++ + R + +K + Sbjct: 588 SVFVSRGLANLWYGRQKKLT 607 Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 79/181 (43%), Gaps = 4/181 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +GP++ E I KG A+ +++ I + F + ++ L +++ + Sbjct: 429 MDFVEERTIGPQLGAENIAKGFNSTKYGFAAIAVFMVIYY-MLFGVFSVVALSVNLLLLV 487 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 + L +AA+ +G +++ V++ +R+R+ ++ S + I + Sbjct: 488 ALLSTLQATLTLPGIAAIALTLGMAIDANVLINERIREELR---NGNSPQAAISIGFDRA 544 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +++ I+ L + ++G I FA+ GI+ + SS+F++ + Y + Sbjct: 545 WATIIDSNVTTMIAGLALLIFGSGPIRGFAVVHCLGILTSIFSSVFVSRGLANLWYGRQK 604 Query: 829 K 829 K Sbjct: 605 K 605 Score = 42.4 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 23/121 (19%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ + G++ +PNF +S + S G + + LE Sbjct: 3 RYPLWKYLIIVLALIFGVIYTVPNFFGESPAVQISS--------------GKATVKLEA- 47 Query: 62 EDDFVNGFLQMYSDELRS-FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 G L D L L G+ + Q + F D + + L Sbjct: 48 ------GVLARVQDILEKGGLPSTGLYY-EVNGSQGSVRARFTDPDTQFKAKALLEKELN 100 Query: 121 G 121 Sbjct: 101 T 101 >gi|295688852|ref|YP_003592545.1| protein-export membrane protein SecF [Caulobacter segnis ATCC 21756] gi|295430755|gb|ADG09927.1| protein-export membrane protein SecF [Caulobacter segnis ATCC 21756] Length = 316 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 165/302 (54%), Gaps = 2/302 (0%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 IP +F+R S + + S+ LF GLN GIDFKGG L + Sbjct: 1 MRWPLIRYIPRATKFRFVRWAPVAAVFSAILIVGSVASLFVQGLNLGIDFKGGNALEIAM 60 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 +RPV L+ +RS + + + D Q F + N + ++ P + A + V++++ + Sbjct: 61 SRPVPLADLRSAMNQIGVHDAQVQGFASQPNSAMV-KFLPAEGQAPSAASANVERELVKR 119 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705 P + + VG K+S EL+ G + ++ + L YIW RF + GA+ +I DI Sbjct: 120 FPDLKVTSRSEVGAKVSGELLMSGFKALGVALLLTLGYIWFRFGLSYGTGAVVAVIHDIV 179 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 TLG ++ GIEF++T +AA+LT+IGYS+N+KV+ +DR+++N++ Y + RD+ID S Sbjct: 180 LTLGLLSVVGIEFSMTEIAALLTVIGYSMNEKVITFDRLKENLRKY-KTTPLRDIIDLSE 238 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 NE L R++ T A +++ V+GG V+ M FGI++ SSI+IA P++L Sbjct: 239 NERLSRTIITGTTALLALGGTMVFGGPVLFPLVFTMVFGIIIGTYSSIYIALPLILVWGV 298 Query: 826 WR 827 R Sbjct: 299 KR 300 >gi|313681646|ref|YP_004059384.1| protein translocase subunit secf [Sulfuricurvum kujiense DSM 16994] gi|313154506|gb|ADR33184.1| protein translocase subunit secF [Sulfuricurvum kujiense DSM 16994] Length = 323 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 83/294 (28%), Positives = 159/294 (54%), Gaps = 3/294 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L + F+ S + +I L+ T G ++GIDF GG + V P Sbjct: 1 MELFKEDKVYNFLGKGKIFFVASFVLFFLAIALIATKGFSFGIDFTGGTVVQVKYQGPAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + VR LE ++ + + G +V D ++ + V ++I + Sbjct: 61 IDKVREALEKDELFKHAAVSEFGSPEEIVIKTAASTDG--LSKDIGDVTREILKGTGEFE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 I+ ++VGPK+ EL KG+ +++ A++ + R++W FAL AI ++ DI T GF Sbjct: 119 IRRVDMVGPKVGDELRVKGLTAFLLTLGAIMAMVTFRYEWRFALAAIIAIVHDIVITFGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 + F I+FN+ +VAA+L ++GYS++D ++VYDR+R++++ + + F +++++++ T Sbjct: 179 VSYFEIDFNIESVAALLMILGYSIHDTIIVYDRIREHIQE-SKNSDFVMIVNEAVSRTQS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R+ TS+ F VL + ++GG ++ F+ PM G+++ SSIF+AA ++++ Sbjct: 238 RTTLTSLTVFFVVLTLFLFGGDIMLGFSFPMLVGVIIGTYSSIFVAAQLVVWTG 291 >gi|308049473|ref|YP_003913039.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Ferrimonas balearica DSM 9799] gi|307631663|gb|ADN75965.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Ferrimonas balearica DSM 9799] Length = 1047 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 72/567 (12%), Positives = 159/567 (28%), Gaps = 37/567 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60 + +L + G+L + Q + ++P+ P + Sbjct: 8 RPVFAWVLAILAMLAGILSLV-----QLPVAQYPNIAPPA-----------IQVTAFYPG 51 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119 + ++ + L + ITL+F + +V + Sbjct: 52 ASAKTAEETVTQVIEQELTGLDGLRYISSESDSFGNSIITLTFEAGTDPDIAQVQVQNKV 111 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 G +KL ++ +V + +++ + S + D I Sbjct: 112 SGATAKLPEVVQRQGVVVEKSSDTFLMVMAFYSTDGSMTDTDLSDFVASNLEDPISRVPG 171 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 + DP+RL + ++ N G + + Sbjct: 172 VGSVQLFGA-EYAMRIWLDPNRLESYGLNPSDVTAAIAEQNTQVSAGQLGATPVVEGQQL 230 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 + + + + + E + A Sbjct: 231 NATITARSLL-------------RTPEEFEGILLKVEEDGSEVRIRDVARVELGAANYST 277 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + S + T+ A LR P V S Sbjct: 278 IARYNGQPASGMGISLATGANALDTMNAVNDRIAELRNLFPPGVEMQVPYDTTPFVKLSI 337 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 T LV +V+F+ + + L+ +I + V+ T+A+L LG ++ ++ Sbjct: 338 ENVVHTLLEAVVLVFLVMFLFLQSFRATLIPTIAIPVVVLGTMAVLMALGYSINTLTMFA 397 Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 +VL IGL VD I+V E + + + + + + V + Sbjct: 398 MVLAIGLLVDDAIVVVEGVERVMEEEGLPPLEATRKSMKQLSGALVGIGMVLSAVFVPMA 457 Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535 FFGG R F+IT+ ++ +S+ A+ + + + +++ D F Sbjct: 458 FFGGTTGIIYRQFSITIVTAVALSVLVALILTPTLCVQLMKQGHGSGSDKGFFGWFNRTF 517 Query: 536 DCIAIQFMRARFWGVGISILFSICSIC 562 D ++ + + + Sbjct: 518 DRATNGYVGHVDGFIRRMGRLMLIFVA 544 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 77/223 (34%), Gaps = 8/223 (3%) Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665 + Q G L A + ++ V + +T + Sbjct: 281 YNGQPASGMGISLATGANALDTMNAVNDRIAELRNLFPPGVEMQVPYDTTPFVKLSIENV 340 Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 + + V++ + M +++ + L + + + T+ G N + A Sbjct: 341 VHTLLEAVVLVFLVMFLFLQ---SFRATLIPTIAIPVVVLGTMAVLMALGYSINTLTMFA 397 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 ++ IG V+D +VV + + + + + KS+ + G V M +P Sbjct: 398 MVLAIGLLVDDAIVVVEGV--ERVMEEEGLPPLEATRKSMKQLSGALVGIGMVLSAVFVP 455 Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 MA +GG+ F+I + + ++ ++ + + + + Sbjct: 456 MAFFGGTTGIIYRQFSITIVTAVALSVLVALILTPTLCVQLMK 498 Score = 58.2 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 48/414 (11%), Positives = 118/414 (28%), Gaps = 15/414 (3%) Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 A ++ S+AG A + +N +E +S ++ RA+S I ++ + Sbjct: 601 EAVASVFSVAGFSFAGRGANAGILFMNMVPFKERTTEESSVWAVMGRAQRAFSQIKEAMV 660 Query: 469 TALIATVVL-------FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521 ++ F G + + +M Sbjct: 661 FVFAPPAIIELGTATGFDMYLQDRTGLGHDALMQGRNQLLGMAMQNPNLMNVRPNGLDDT 720 Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF--SICSICLLFTHGLNYGIDFKGGI 579 + + + ++I + S I + + + Sbjct: 721 PQFVIEIDQLKAEALGVSINDINNTLTTSFGSAYVNDFIDRGRVKQVYVQSDAQYRMVPS 780 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + R +V + + + + T V Sbjct: 781 DIDFWYVRNNQGEMVPLKAITSTRWEFGSPRLERFNGVSAMQIQGQPKAGISTGVAMTTM 840 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 +++ +P + + + + G + V+ I L + W I Sbjct: 841 EQLVSQLPNNLNVAWTGLSYEEREAGGQAGALYVLSILIVFLCLAALYESWSVPFSVILV 900 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 + L + + L G++ ++ +LT +G S + +++ + ++ Y + Sbjct: 901 VPLGVLGAVIATGLRGLDNDVYFQVGLLTTVGLSAKNAIMIVEFAKQY---YEEGADMVE 957 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + L + TS+A VLP+A+ G + + G++ A Sbjct: 958 AALHAARVRLRPILMTSLAFGFGVLPLALSSGAGSGAQNAVGTGVIGGVITATF 1011 >gi|255318816|ref|ZP_05360042.1| AcrB protein [Acinetobacter radioresistens SK82] gi|262378923|ref|ZP_06072080.1| AdeY [Acinetobacter radioresistens SH164] gi|255304072|gb|EET83263.1| AcrB protein [Acinetobacter radioresistens SK82] gi|262300208|gb|EEY88120.1| AdeY [Acinetobacter radioresistens SH164] Length = 1059 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 68/554 (12%), Positives = 158/554 (28%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGVLT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGLDGLRYISSSSAGNGQASIQLNFEQGIDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVRVTKSGASFLQVIAFYSPDDSLSDADIKDYVNSNISEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N G L Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLSSFQLTPSDVANAIRSQNAQVAVGQLGGAPLTKDQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + + A Sbjct: 229 VLNATVTAQSLL-------------QTPEEFSNVFLKNTASGAQVRIGDVAKVELGSADY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T E LR ++++ Sbjct: 276 GFISKYNNKPAAGVAIKLATGANALDTAEAVEARLKELRTSYPQGMVDVLAFDTTPFIKL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLVEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + ++ + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEHLDPVTATELSMKQISGALIGITSVLTAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A++ A+ +++ N + F Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMILSLIVALTFTPALCATLLKQHDPNKAPSNNIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 M R+ Sbjct: 516 RWFNHKFDRMSHRY 529 Score = 81.3 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 86/249 (34%), Gaps = 8/249 (3%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V + V + + + +++ +E K++ P Sbjct: 259 QVRIGDVAKVELGSADYGFISKYNNKPAAGVAIKLATGANALDTAEAVEARLKELRTSYP 318 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706 + + I + ++ + I + I +++ + W + + + + Sbjct: 319 QGMVDVLAFDTTPFIKLSIESVVHTLVEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLG 378 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T +FG N + A++ IG V+D +VV + + + + + S+ Sbjct: 379 TFAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEHLDPVTATELSMK 436 Query: 767 ETLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G + TS+ +PMA +GG VI F+I + ++++ ++ + Sbjct: 437 QISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMILSLIVALTFTPALCAT 495 Query: 823 IYDWRAKNA 831 + N Sbjct: 496 LLKQHDPNK 504 Score = 52.0 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 83/261 (31%), Gaps = 14/261 (5%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V N+ + G + ++G + ++ PG S + Sbjct: 793 VRNNQGQMVPFSAFATGEWTYGSPRLERYNGISSVNIQGTPAPGVSSGDAMLAMQEIMAK 852 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK---WYFALGAITT 699 + + E + + +S + + + + ++ F++ + Sbjct: 853 LPSMGMQGYDYEWSGLSLEENEAGSQTAALLALSILIVFLCLAALYESWSIPFSVLMVIP 912 Query: 700 LILDITKTLGFFALF-----GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 L + L F + + N+ A++ +IG + + +++ + + + Sbjct: 913 LGIVGAVILTFLGMMISKDPNLSNNIYFKVAIIAVIGLAAKNAILIVEFAKDLQEEG--- 969 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811 + + L + T++A VLP+A+ G S + G++ + Sbjct: 970 EELLEATLHAARMRLRPIIMTTLAFGFGVLPLALSSGAGAGSQHSVGYGVLGGVISSTLL 1029 Query: 812 SIFIAAPILLFIYDWRAKNAR 832 IF ++I + + Sbjct: 1030 GIFFIPVFYVWIRSIFKQKPK 1050 >gi|329122117|ref|ZP_08250725.1| protein-export membrane protein SecF [Dialister micraerophilus DSM 19965] gi|327466924|gb|EGF12440.1| protein-export membrane protein SecF [Dialister micraerophilus DSM 19965] Length = 293 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 80/290 (27%), Positives = 143/290 (49%), Gaps = 1/290 (0%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 ++ IS + I S +F N+GIDF GG L + + V + VR Sbjct: 1 MSNFNVIKHSKVWFTISGILVILSFIAIFMFKFNFGIDFTGGTILDLEFKQNVTVQQVRE 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + + + Q G+ + + + V + I + + ++ E Sbjct: 61 ELRNNDLETSTIQLL-GDGHEDSGKNVMIRTKNLSSEESQKVIENIKKGIGDVDVKRMET 119 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VG I E+ ++ V S +AM+IY+ +RF+ A+ +I + DI LG FA+F + Sbjct: 120 VGAVIGSEVTENTLLNVGFSFLAMIIYMTVRFEHKIAISSIIAICHDILMVLGAFAIFHL 179 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 E + + +AAVLT++GYS+N+ VV++DR+R+N+ + + SF L + SI++T+ RS+YT Sbjct: 180 EVDASFLAAVLTVLGYSMNESVVIFDRIRENIHTHKRTDSFAKLANDSIHQTIHRSMYTL 239 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + + +GG +FA+ M G + A SS+ IA + + ++ Sbjct: 240 STVLFATGALYFFGGDTTKNFALVMLIGFISGAYSSVCIATSLWVKWHER 289 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300072604|gb|ADJ62003.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 73/618 (11%), Positives = 175/618 (28%), Gaps = 43/618 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I G L + ++P+ P + Sbjct: 8 RPVFAWVLAIFIMLAGALAI-----TGLPVSQYPNIAPPTIV---------VTATYPGAT 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 ++ + ++ + + +IT++F+ + A V L+ Sbjct: 54 AQTLDDSVTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKR 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 V ++L + + T + ++ + + + R +++I Sbjct: 114 VEARLPAAVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 Q + DP++L L T A ++ N G G + Sbjct: 174 QAQLFGT-ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V +++ + I + Sbjct: 233 TVVVNGQLT-------------SPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSG 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + + T L + S Sbjct: 280 RLDGKPSSFIGVQLSPTANALGTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+F+ + ++ ++ + + ++ T A L L G ++ + ++ G+V Sbjct: 340 VVKTLIEAIVLVFLVMFLFLQNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IG+ VD I+V E + + S + + + + + + + FF Sbjct: 400 LAIGILVDDAIVVVENVERIMSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFF 459 Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 G G R F+++M S++ S+ A ++ A+ I + + Sbjct: 460 GGAVGAIYRQFSLSMVASMVFSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 S I +A + + ++ + + + + +G I V Sbjct: 520 NSTASGYQGIIGGMLNKAGRYMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPP 579 Query: 588 PVDLSVVRSNLESLQIGD 605 S + ++ ++ Sbjct: 580 GASTSRTTAVVKQIEEYY 597 Score = 75.9 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 80/197 (40%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 G + A + +E + K V + +T E+++ I +++ + M +++ Sbjct: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 + + + + + T LFG N+ + ++ IG V+D +VV + + Sbjct: 361 ---NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENV- 416 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 + +S D K++ + G + ++ +PMA +GG+V F++ M Sbjct: 417 -ERIMSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMV 475 Query: 803 FGIVVAASSSIFIAAPI 819 +V + + + + Sbjct: 476 ASMVFSVLMAFTLTPAL 492 Score = 60.1 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 74/196 (37%), Gaps = 10/196 (5%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKWYFAL 694 E + + + + L E G + + + +S IA+ + + ++ ++ Sbjct: 834 EAMAEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYEST-SI 892 Query: 695 GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L++ + + + ++ ++ ++G S + +++ + + L Sbjct: 893 PLAVMLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKD---LQA 949 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809 + ++++ + TS+A + VLP+A+ G + + + G++ A Sbjct: 950 QGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITAT 1009 Query: 810 SSSIFIAAPILLFIYD 825 ++F+ + + Sbjct: 1010 VLAVFLVPIFFVVVRK 1025 >gi|261822531|ref|YP_003260637.1| preprotein translocase subunit SecF [Pectobacterium wasabiae WPP163] gi|261606544|gb|ACX89030.1| protein-export membrane protein SecF [Pectobacterium wasabiae WPP163] Length = 322 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 167/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR IS L + ++ ++ G N+G+DF GG + + + Sbjct: 5 YNIEQLNHGRKVYDFMRWDTLAFVISGLLIMIAVAIMGVRGFNWGLDFTGGTVIEINLEK 64 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P+DL V+RS+LE+ + QNF ++ +VR+ G S + +++ Sbjct: 65 PIDLDVLRSSLETSGFSEPQVQNFGSSRDVMVRMPPVSG-SENEALGNKVLTVVNDTFQQ 123 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+LIYI RF+W ALGA+ L D+ T Sbjct: 124 HATVKRIEFVGPSVGSDLAQAGALALLSALIAILIYIGFRFEWRLALGAVLALGHDVIIT 183 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+NDK+VV DR+R+N + + ++ + S+ + Sbjct: 184 MGLLSLFSIEVDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKIRRGTPY-EITNISLTQ 242 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS +L + +GG+++ F++ M G+++ SSI++++ + L + R Sbjct: 243 TLHRTIITSATTLAMILILMFFGGALLHGFSMTMFIGVIIGTISSIYVSSALALKLGMKR 302 Query: 828 A 828 Sbjct: 303 E 303 Score = 42.0 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439 + L A ++ +VI+T+ LLSL + L IA ++ IG +++ I+V++RIR Sbjct: 162 FRFEWRLALGAVLALGHDVIITMGLLSLFSIEVDLTIIASLMSVIGYSLNDKIVVSDRIR 221 Query: 440 EENR---KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 E R + + + TI S T + +++FF GG + GF++TM + + Sbjct: 222 ENFRKIRRGTPYEITNISLTQTLHRTIITSATTLAMILILMFF-GGALLHGFSMTMFIGV 280 Query: 497 LISMFTAISIVRAMMIFIIRYKKM 520 +I ++I + A+ + + ++ Sbjct: 281 IIGTISSIYVSSALALKLGMKREH 304 >gi|157155020|ref|YP_001464740.1| acriflavine resistance protein F [Escherichia coli E24377A] gi|157077050|gb|ABV16758.1| acriflavine resistance protein F [Escherichia coli E24377A] Length = 1034 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNSFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|145589971|ref|YP_001156568.1| protein-export membrane protein SecD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048377|gb|ABP35004.1| protein-export membrane protein SecD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 619 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 164/516 (31%), Positives = 272/516 (52%), Gaps = 23/516 (4%) Query: 30 SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L PS + + LGLDLRGG + +L+VD V + S ++RS L+ I Sbjct: 113 NLLSNTPSWLNAINALPMPLGLDLRGGVYFLLQVDMKGAVQKKVTALSTDIRSQLRSNNI 172 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + + IT++F S + A + Q ++ + ++ Sbjct: 173 RHQGIDRSPDSITINF-GSTDEAEAARTLLNTSQP---------DLIWIIRNGAGSVKLL 222 Query: 147 --LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204 + + ++A++Q++ + +R++++ + E IQ+ G+ RI++QLPG QD +R + Sbjct: 223 GEFKPKALADIQNNAVKQNIITLNKRVNELAVKEPVIQQQGAERIVVQLPGVQDTARAKD 282 Query: 205 LLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 ++G TA + P N + G R + + + V SG ++ A+A Sbjct: 283 IIGRTATLESRLADPLVSRINVGEAAPPGTDTFRFGENQMGVFKKSVIFSGDNITDASAG 342 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQAIPSGKA 317 FD +P V+IS D G R EVTR+NIGKP+ ++L + + Q+ K Sbjct: 343 FDQNQ-RPAVNISLDATGGRVMQEVTRENIGKPMGMILFEKGKGEVLTIATIQSEFGAKF 401 Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377 QI+G T E+A LA +LRAGSL + I+EER +G LG+++I KG +++ G I + Sbjct: 402 QITGQPTTESANDLALLLRAGSLAAPMEIIEERTIGPSLGAENIEKGFKSLLIGFTAISI 461 Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 FM+ Y +G + ++ +N++L +++LS+L ATLTLP IA + L +G+A+DSN+L+NER Sbjct: 462 FMVAYYLLFGTFSVIALAVNLLLLISILSMLQATLTLPGIAAMALALGMAIDSNVLINER 521 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 IREE R S ++ +GF +A++TI DSN+T LIA + L FG G ++GFAI L IL Sbjct: 522 IREELRNGSSPQMAISIGFDKAWATILDSNVTTLIAGLALLAFGSGPIKGFAIVHCLGIL 581 Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 SMF+A+ R ++ K S Sbjct: 582 TSMFSAVFFSRGLVNLWYGRHKKISKLAIGQVWRPQ 617 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 111/291 (38%), Gaps = 7/291 (2%) Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 + G +I + +N +D GG + + + + E + Sbjct: 325 FKKSVIFSGDNITDASAGFDQNQRPAVNISLDATGGRVMQEVTRENIGKPMGMILFEKGK 384 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 ++ E ++ QP A L + + I +GP + Sbjct: 385 GEVLTIATIQSEFGAKFQITGQPTTESANDLALLLRAGSLAAP---MEIIEERTIGPSLG 441 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 E I KG ++I A+ I++ + F ++ L +++ + ++ L Sbjct: 442 AENIEKGFKSLLIGFTAISIFMVAYY-LLFGTFSVIALAVNLLLLISILSMLQATLTLPG 500 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 +AA+ +G +++ V++ +R+R+ ++ S + I ++ + +++ I+ Sbjct: 501 IAAMALALGMAIDSNVLINERIREELR---NGSSPQMAISIGFDKAWATILDSNVTTLIA 557 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 L + +G I FAI GI+ + S++F + ++ Y K +++ Sbjct: 558 GLALLAFGSGPIKGFAIVHCLGILTSMFSAVFFSRGLVNLWYGRHKKISKL 608 Score = 43.5 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 21/124 (16%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ IG L +LPNF ++ + SA P ++ L Sbjct: 3 RYPLWKYLVIAVALLIGGLYSLPNFYGEAPAVQVSSAKPTIKVDL--------------- 47 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 ++ + F I F ++ + D + L Sbjct: 48 ---ATQSRVEKILADANISTTG---MFFESAGSVGTIKARFNNTDIQLRARDLLQQKLNT 101 Query: 122 VNSK 125 + Sbjct: 102 DQND 105 >gi|114565012|ref|YP_752526.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella frigidimarina NCIMB 400] gi|114336305|gb|ABI73687.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella frigidimarina NCIMB 400] Length = 1051 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 77/695 (11%), Positives = 183/695 (26%), Gaps = 55/695 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L + ++PS P +V+ Sbjct: 8 RPIFAWVIALLIMLAGVLAI-----KGLPIAQYPSIAPPT-------------VVISAFY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S ITL+F + +V Sbjct: 50 PGASAKTMEDTVTQVIEQRMTGLDHLRYISSTSDSFGNATITLTFNAEADPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D + Sbjct: 110 KLQAATPLLPSEVQQQGVKVNKSSSGFLMVLGFVSADGSMGKSDISDYVAANVQDPMSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L Q T+ + N G Sbjct: 170 PGVGEITLFGAQ-YAMRIWLDPFKLTQYKLTSIDIVAAIREQNAQISAGQLGGAPSVAGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + I + + + Sbjct: 229 ELNATVSAQSRL-------------QTPEQFKQIIVKSDSSGANVYLGDVARVELGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T E ++ + Sbjct: 276 AVDSYYNGKPASGLAFKLATGANALDTAEGIKAKVNEMKEFFPQGLEVVYPYDTTPFVEQ 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +++++ + + L+ ++ + ++ T A+LS G T+ ++ Sbjct: 336 SIEGVVHTLIEAIVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAVLSAAGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + S + +T V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPLEATRKSMDQITSALVGIGLTLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSI 523 + F G R F+IT+ ++ +S+F AI + A+ +++ Sbjct: 456 MAFMSGSTGVIYRQFSITIVSAMALSVFVAIVLTPALCATMLKPVKKGHTHADTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + R+ + L + L + +G + Sbjct: 516 NRKFDAMTSRYESSVGSILKRSFRVMLIYVGLVIAVAWIFLRMPTAFLPDEDQGILFTQA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + ++ + F V G +K T Sbjct: 576 ILPTNSTQESTVKVLKDVSDYYLTEEKDLVNSVFTVAGFSFAGSGQNMGIAFVSLKDWST 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 P +++ ++ ++ + + Sbjct: 636 REAPGEDVKSLAGRAMGRFMQIKE----ALVFAFV 666 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 83/250 (33%), Gaps = 6/250 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + V L V + + + L +++ ++ ++ Sbjct: 255 SSGANVYLGDVARVELGAESYAVDSYYNGKPASGLAFKLATGANALDTAEGIKAKVNEMK 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 E P + I + +I + + + + +++ + + L + + Sbjct: 315 EFFPQGLEVVYPYDTTPFVEQSIEGVVHTLIEAIVLVFLIMYLFLQNFRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T + G N + A++ IG V+D +VV + + + +S + Sbjct: 375 VLLGTFAVLSAAGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPLEATR 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+++ V + +PMA GS F+I + + ++ +I + + Sbjct: 433 KSMDQITSALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVFVAIVLTPAL 492 Query: 820 LLFIYDWRAK 829 + K Sbjct: 493 CATMLKPVKK 502 Score = 68.2 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 75/244 (30%), Gaps = 9/244 (3%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + V N + S + G Q F+G ++ PG S Sbjct: 779 MQPGDLDSWYVRNNNGEMVPFSAFASGSWEFGSPQLQRFNGVPAVNIQGATAPGYSTGAA 838 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + + + ++I L+ + W Sbjct: 839 MDALEEMAEKLPPGYGLEWNGLSYEERLSGNQAPSLYALSILIVF---LVLAALYESWSV 895 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L I + L I L + G+ ++ +LT +G + + +++ + ++ Y Sbjct: 896 PLSVILVVPLGIIGALLAMSARGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEY---YE 952 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809 + ++ L + TS+A + V+P+A+ G + + G++ + Sbjct: 953 KGSGLIEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGGMMTST 1012 Query: 810 SSSI 813 I Sbjct: 1013 FLGI 1016 >gi|226226967|ref|YP_002761073.1| protein-export membrane protein SecF [Gemmatimonas aurantiaca T-27] gi|226090158|dbj|BAH38603.1| protein-export membrane protein SecF [Gemmatimonas aurantiaca T-27] Length = 334 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 158/305 (51%), Gaps = 6/305 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPV 589 I +F+R G+++ F G +NY I+F GG + + P Sbjct: 1 MLRIFHNTKYEFVRWWRVAAGLTLAFIAAGFVSFAVTGGVNYSIEFTGGTLMQLQFKTPP 60 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 D++ VRS L++ I Q F +F +R + + + ++ + Sbjct: 61 DVAEVRSALDAAGIQGAEIQQFGANTDFTIRARDEKQVEAQDAGAEGISRQITAALDAKF 120 Query: 650 -----TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 TI TE VGPK+ EL + ++I++I LIY+ IRF W F L A+ + DI Sbjct: 121 GAGTVTIVRTEAVGPKVGAELRTGAAMAMLIASIFTLIYLAIRFDWRFGLAAVLSTTHDI 180 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 TL F +F IE +LT VAA+LTL+GYS ND ++++DR+R+N+K + ++D+S Sbjct: 181 LITLAFIKIFHIEVSLTVVAAILTLVGYSANDTIIIFDRVRENLKKPHKGETLSHILDRS 240 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 INETL RS+ T F + L + + G VI FA MAFG+V+A SSI++A P+LL+I Sbjct: 241 INETLPRSIMTHTTTFSATLALLLLAGEVIRPFAWVMAFGVVMATFSSIYVAGPLLLWIE 300 Query: 825 DWRAK 829 + Sbjct: 301 GRWPR 305 >gi|289664655|ref|ZP_06486236.1| multidrug efflux transporter [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1047 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 70/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L + ++PS P + + + Sbjct: 8 RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPA-------------VAITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + +K + S ITL+F + + +V Sbjct: 50 PGASAQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ + T + + + + S + + I Sbjct: 110 KLSLATPLLPTEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L T + N G + Sbjct: 170 EGVGDTTLFGSQ-YAMRIWMDPNKLSNFSLTPVDVRNAIQAQNAQISAGQLGALPAVANQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + + I Sbjct: 229 QLNATITAQTRL-------------KTAAQFENILLRTQADGSQVRLRDVARIELGSESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T+ P Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLDEQEKFFPPGMKVQKPYDTTPFVRI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +L+ G T+ ++ Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + Q S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEQLSPKEATRKSMGQISGALIGVALVLAAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------I 523 + FF G R F+IT+ ++ +S+ A+ + A+ +++ Sbjct: 456 MAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVHKGHGLATTGLFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + + + + L ++ + + +G + + V Sbjct: 516 NRLFNRGNTGYQGVVRHMLGKGWRYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ ++ + Q F V G ++ Sbjct: 576 QLPPGAANARTTEVLKQVEHHFLVDQKESVAGIFAVTGFSFAGSGQNTGLAFVKLRPWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 ++ + + + Sbjct: 636 RTGKGQSVTDVAAKASAFFAGIRDAKVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 87/243 (35%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + L +++ R ++ + + Sbjct: 258 SQVRLRDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLDEQEKFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P R I + + ++ + + + + +++ + + L + + + Sbjct: 318 PPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + A++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEQLSPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G + ++ +PMA + GS F+I + + ++ ++ + + Sbjct: 436 GQISGALIGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 65.9 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 77/266 (28%), Gaps = 10/266 (3%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + A V + + + N L Sbjct: 776 PYRMNPQDIDRWFVRNSAGTMVPFNAFATASWQSGSPRLERYNSVPSVEILGMALPGAAS 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 S +++E K+ + + + + G++ + I L + Sbjct: 836 SGEAMQIVEAAAAKLPPGIGF----EWTGLSRQEKASSGQTGLLYSVSILIVFLCLAALY 891 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W I + L + L L ++ +LT IG + + +++ + R+ Sbjct: 892 ESWAIPFSVILVVPLGVFGALLAAMLTWKVNDVYFQVGLLTTIGLASKNAILIVEFARE- 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804 L+ S ++ L + TS+A + V+P+ + G + + G Sbjct: 951 --LHEGGKSLVTAALEAARMRLRPILMTSLAFILGVVPLVLTSGAGAGAQHALGTAVIGG 1008 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 +V +IF + + + Sbjct: 1009 MVSGTVLAIFFVPLFFVLVCGLFQRR 1034 >gi|260870017|ref|YP_003236419.1| multidrug efflux system protein [Escherichia coli O111:H- str. 11128] gi|257766373|dbj|BAI37868.1| multidrug efflux system protein [Escherichia coli O111:H- str. 11128] gi|323178554|gb|EFZ64130.1| inner membrane protein [Escherichia coli 1180] Length = 1034 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 70/689 (10%), Positives = 185/689 (26%), Gaps = 51/689 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671 ++ + ++ ++ Sbjct: 635 ERNGDENSAEAVIHRAKMEFGKIRDGFVI 663 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|311278618|ref|YP_003940849.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Enterobacter cloacae SCF1] gi|308747813|gb|ADO47565.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Enterobacter cloacae SCF1] Length = 1037 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 76/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q ITL+F+ +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSSAGQATITLTFSAGTDPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + + + Sbjct: 110 QLQSAMKKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQEPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L TT ++ N G D Sbjct: 170 NGVGDISAYGSQYSM-RIWLDPAKLTSYQLTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + Sbjct: 229 ALNATVNAQSLL-------------QTPQQFRDITLRVNKDGSLVTLGDVAKVELGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L + Sbjct: 276 DYLSFYNRNQASGLGIQLASGANEMQTAELVLNRLDQLSHYFPHGLEYKIAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L G ++ ++ Sbjct: 336 SIHDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAILYACGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSAEGLSPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPIHKGEEHGKKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + R+ W + +L + + + +G V Sbjct: 516 NRVFNRNAERYETAVGRILHRSVRWMLIYVLLLGGMVVLFMRLPTSFLPQEDRGMFLTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ ++ S + + F G+ R+ +K Sbjct: 576 QLPSGSTQQQTLKVVKKVENYFFSHEQANVASIFSTIGSGPGGNGQNVARMFVRLKDWDA 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RDPKTGSSFAIIERATKAFNQINEARVFA 664 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 46/430 (10%), Positives = 127/430 (29%), Gaps = 15/430 (3%) Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464 L + + + A I L D N + + + + + ++ T+ Sbjct: 75 LMYMSSQSSSAGQATITLTFSAGTDPNEAMQQVQNQLQSAMKKLPQAVQDQ----GVTVR 130 Query: 465 DSNITALIATVVLFFFGGGAVRGFA--ITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 + T ++ + G + A + + +S + + A + Sbjct: 131 KTGDTNILTIAFVSTDGSMDKQDIADYVASNIQEPLSRINGVGDISAYGSQYSMRIWLDP 190 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + G + + + + Sbjct: 191 AKLTSYQLTTKDVTDAISSQNAQIAVGQLGGTPSVDKQALNATVNAQSLLQTPQQFRDIT 250 Query: 583 VLANRP---VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + N+ V L V + D + + L + + ++ Sbjct: 251 LRVNKDGSLVTLGDVAKVELGAESYDYLSFYNRNQASGLGIQLASGANEMQTAELVLNRL 310 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698 +++ P + I + ++ + + + +++ + + L Sbjct: 311 DQLSHYFPHGLEYKIAYETTSFVKASIHDVVKTLLEAIALVFLVMYLFLQNFRATLIPTI 370 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 + + + T G N + A++ IG V+D +VV + + + +S + Sbjct: 371 AVPVVLMGTFAILYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSAEGLSPK 428 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815 + KS+ + G V +M +PMA +GG+ F+I + +V++ ++ + Sbjct: 429 EATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMIL 488 Query: 816 AAPILLFIYD 825 + + Sbjct: 489 TPALCATLLK 498 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 75/242 (30%), Gaps = 8/242 (3%) Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + S + + E+ G++ + + L Sbjct: 791 NSSGEMVPFSAFASSRWQTGSPRLERYNGYSAVEIIGEAAPGVSTGTAMNVMEKLVSQLP 850 Query: 650 TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 T E L + IS + + + + ++ W + + L + Sbjct: 851 TGFGLEWTAMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGA 910 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 L + G+E ++ +LT+IG S + +++ + + + + + Sbjct: 911 LLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNAKGQDLLAATLHACRQ 967 Query: 768 TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 L + TS+A VLPMA G + + G++ A +IF + I Sbjct: 968 RLRPIIMTSLAFVFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIR 1027 Query: 825 DW 826 Sbjct: 1028 RR 1029 >gi|268591268|ref|ZP_06125489.1| acriflavine resistance protein B [Providencia rettgeri DSM 1131] gi|291313239|gb|EFE53692.1| acriflavine resistance protein B [Providencia rettgeri DSM 1131] Length = 1052 Score = 197 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 70/689 (10%), Positives = 183/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ + GLL + Q + ++P+ P + + + Sbjct: 8 RPIFAWVIAIITMLAGLLAII-----QLPVSQYPTIAPPA-------------VSISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ITL+F + +V Sbjct: 50 PGADAETVQNTVTQVIEQNMNGIDNLVYMSSSSDSSGSASITLTFEAGTDGDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + D + Sbjct: 110 KLQLAMPLLPQEVQQQGISVDKSTSSFLMVAGFVSSDGSMGQYDIADYVGSNIKDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + P +L + TT + + NN G + Sbjct: 170 NGVGETQLFGTQ-YAMRIWLKPEQLVKYNMTTTDVINAIKVQNNQVAAGQLGGSPSVANQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + ++ Sbjct: 229 RLNVSIIAQTRL-------------NSPEEFSNILLRVNQDGSQVRIKDVADVQLGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T ++ + Sbjct: 276 STIARFNGKPAAGIGIKLATGANALDTSNNVRAALEEMKPFFPQGLEIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV++V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SINEVVKTLVEAIMLVVVVMYLFLQNIRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLSPKEATKKSMGQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ S+++S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMILSVLVAMILTPALCATMLKPIEKGSHGSQKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + D ++ + V +L + + + +G + Sbjct: 516 NRTFEKQAHHYTDSVSRMLNGTGRYLVIYLLLVVGMAFMFVRLPSSFLPAEDQGVFLSMI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ L+ + + + + E F V G ++K Sbjct: 576 QLPPGSTQEQTQAVLDEVNNYYHTEEAKNVESVFTVGGFSFAGQGQNMGLAFVVLKNWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + + I Sbjct: 636 RKGDENHVDAIVQRANIALSQKQEALIYA 664 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 90/241 (37%), Gaps = 10/241 (4%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 V D+ + N ++ + + G L S LE +K Sbjct: 259 QVRIKDVADVQLGAENYSTIARFN--GKPAAGIGIKLATGANALDTSNNVRAALEEMKPF 316 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + + + +T E+++ + +++ + M +++ L + Sbjct: 317 FPQGLEIVYPYDTTPFVKISINEVVKTLVEAIMLVVVVMYLFLQ---NIRATLIPTIAVP 373 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 + + T + FG N + A++ IG V+D +VV + + + +S ++ Sbjct: 374 VVLLGTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEAT 431 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818 KS+ + G V +M +PMA +GGS F+I + ++++ ++ + Sbjct: 432 KKSMGQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSSMILSVLVAMILTPA 491 Query: 819 I 819 + Sbjct: 492 L 492 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 70/184 (38%), Gaps = 7/184 (3%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 E G L + IS I + + + ++ W + + L I L F Sbjct: 859 GYEWTGMSYQERLAGNQAPALYAISLIVVFLCLAALYESWSVPFSVMLVVPLGIIGALLF 918 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 ++ G++ ++ +LT IG S + +++ + + M+ + ++ L Sbjct: 919 TSVRGLDNDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LVEATLNAVKMRLR 976 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + TS+A + V+P+ G + S + G+ A S +IF + I Sbjct: 977 PILMTSLAFMLGVIPLVFSNGAGSASQNSVGTGVLGGMFAATSLAIFFVPVFFVVIRRRF 1036 Query: 828 AKNA 831 +K + Sbjct: 1037 SKKS 1040 >gi|94500097|ref|ZP_01306631.1| AcrB/AcrD/AcrF family protein [Oceanobacter sp. RED65] gi|94427670|gb|EAT12646.1| AcrB/AcrD/AcrF family protein [Oceanobacter sp. RED65] Length = 1035 Score = 197 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 68/637 (10%), Positives = 190/637 (29%), Gaps = 44/637 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + ++ +I GL+ + L +P +++ D Sbjct: 9 KRPVFASVISLIIVAFGLIA-----FDKLPLREYPDIDEP-VVNIRTD--------YTGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + V + ++ S ++ + ++ +T+ F SR + A+ V + Sbjct: 55 AAEVVEKRITQVIEDRISGIEGIKNIISQSEDGESDVTIEFNLSRDIDGAANDVRDRVSR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L + + + +I+ D + ++ + R +D+ + + Sbjct: 115 ILQNLPEGAEPPEVSKAGAGDDTIMWFNLVSD--RMNLLQLTDYANRYLVDRFSVVDGVA 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + + D +L T A ++ N + + + Sbjct: 173 RVRVGGGLDYAMRIWLDRKQLAARQMTVADIANALRRENIELPAGSIESDQRQFTVRLER 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 +S ++ + Sbjct: 233 AYPTPEALS--------------------NLVLQNKNGFVVKLKDVARVELGAEEKRKSF 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + ++ + A L + + + S Sbjct: 273 RGNGVPMIGIGITKQSTANTLDVARKARALLTEINETLPEGMDLLASYDSSVFIEQSIEE 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T I LV+IV+++ + + L+ ++ ++++ + +L LG T+ L ++ ++ Sbjct: 333 VYQTLFIAMILVIIVIYLFLGNVRATLIPALTVPVSLLGSFIVLYFLGYTINLLTLLAMI 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IG+ VD I++ E I + + +G + I + + + + + F Sbjct: 393 LAIGMVVDDAIVMLENIHRRIDSGEPPLVAAFLGARQVAFAIVATTLVLISVFLPITFLE 452 Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G + FA+ + +I S A+++ + ++ + KS + Sbjct: 453 GDIGKLFTEFAVAISAAIGFSSIVALTLSPMLCSQLLHGHEHKSWLTVKTDQVLDSLSRT 512 Query: 539 AIQFMRAR-----FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 ++++ R + + + +G + V A Sbjct: 513 YQEYLKKRLKKPFMTFAMLLVGLLGSVWLFNQVPSEFAPKEDRGAFFVFVSAPEGSSYDY 572 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630 ++ ++ ++ + + K LVR G + Sbjct: 573 SKAYMDEVEKRLMPMVDSGEVKRLLVRTPRSFGSTSD 609 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 6/228 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + SF+ + + +++ R + +I E +P Sbjct: 253 VKLKDVARVELGAEEKRKSFRGNGVPMIGIGITKQSTANTLDVARKARALLTEINETLPE 312 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + I+ I ++I I++ L T+ + + + Sbjct: 313 GMDLLASYDSSVFIEQSIEEVYQTLFIAMILVIIVIYLFLGNVRATLIPALTVPVSLLGS 372 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G NL + A++ IG V+D +V+ + + + + + Sbjct: 373 FIVLYFLGYTINLLTLLAMILAIGMVVDDAIVMLENIH---RRIDSGEPPLVAAFLGARQ 429 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGIVVAASSSIF 814 V T++ LP+ G + F +A + SSI Sbjct: 430 VAFAIVATTLVLISVFLPITFLEGDIGKLFTEFAVAISAAIG-FSSIV 476 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 54/140 (38%), Gaps = 6/140 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + L + T+ + I L +F N+ + ++ L+G + + +++ + Sbjct: 875 SFIHPLVIMLTVPMAIVGALAGLYIFAQSLNIYSQIGLIMLVGLTAKNGILIVEFCN--- 931 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 +L F + I + + L + T++ + +P+ + G I + GI Sbjct: 932 QLRDQGKEFEEAILTAASIRLRPILMTAITTGLGAVPLILSFGAGSETRQVIGIVVLTGI 991 Query: 806 VVAASSSIFIAAPILLFIYD 825 +++ ++ I + + Sbjct: 992 LISTLFTLLIVPVMYQLLAR 1011 >gi|326794226|ref|YP_004312046.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Marinomonas mediterranea MMB-1] gi|326544990|gb|ADZ90210.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Marinomonas mediterranea MMB-1] Length = 1035 Score = 197 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 83/684 (12%), Positives = 193/684 (28%), Gaps = 40/684 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G Q + ++P+ P + Sbjct: 9 RPVFAWVISIVIMLAGAFAI-----TQLPISQYPNVAPPSV---------KISATYTGAS 54 Query: 63 DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + L S + I + F + +V +Q Sbjct: 55 AETVENSVTQILEQQLTGLDGLLYFSSSSSSTGRASINVVFEQGTDADTAQVQVQNKIQQ 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 V S L ++ + + + ++++ + A + S +I D + E Sbjct: 115 VTSSLPTSVQQQGVSVSKSQSDFLLIAALYDETDTDTASDLSDYLITSIQDSVSRIEGVG 174 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L + +S N G R Sbjct: 175 SVQVFGS-EYAMRIWLDPLKLASYGLMPSDVSSAISAQNTQVAAGSLGQRPSPVGQELNV 233 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + ++ + I + + Sbjct: 234 TVTAQSKL-------------QTPQEFRDIILKYDDNGATVRLSNVATVELGSESYDYVP 280 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + + T E L + N S Sbjct: 281 RLNRHPASGMAVMLAPGANALSTSELVKAKLTELARNMPDGYKISFPKDNTAFIKISIEE 340 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV+IV+F+ + + L+ ++ + ++ T +L + G ++ ++ G+V Sbjct: 341 VVKTLFEAIALVVIVMFVFLQSWRATLIPAIAVPVVLLGTFGVLQVFGYSINTLTMFGMV 400 Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479 L IGL VD I+V E + +++ S + S I + + + + + FF Sbjct: 401 LSIGLLVDDAIVVVENVERVMEEDKLSPREATIKSMKEITSALIGIAVVLSAVFLPMAFF 460 Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G R F+IT+ S+++S+ A+++ A+ +++ + Sbjct: 461 SGSTGVIYRQFSITIVSSMILSVIVALTLSPALCATLLKPNHHAAKKGLGGLFNRSFDWA 520 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID-------FKGGIQLGVLANRPVD 590 R + I + + + +G I + V Sbjct: 521 TGRYSGRIAKVVKQPVRWLVLYGIIIGGLWAMMGNLPGGFLPQEDQGDIMVMVSLPEGAS 580 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ + ++ ++ + + F + G ++K P+++ Sbjct: 581 LTRTSDVMNEVEDHFLNTEGNYVKDIFTISGFNFMGSGQNAGMAFVLLKNWSERQNPMAS 640 Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674 Q L I ++ Sbjct: 641 AQAIAGRSWGAFAGLRDAQIFTLL 664 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 93/241 (38%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V LS V + + D + + + + ++++ + +++ ++ +P Sbjct: 261 VRLSNVATVELGSESYDYVPRLNRHPASGMAVMLAPGANALSTSELVKAKLTELARNMPD 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707 + + I + + + + ++I +++ W L + + + T Sbjct: 321 GYKISFPKDNTAFIKISIEEVVKTLFEAIALVVIVMFVFLQSWRATLIPAIAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G +FG N + ++ IG V+D +VV + + + +S R+ KS+ E Sbjct: 381 FGVLQVFGYSINTLTMFGMVLSIGLLVDDAIVVVENV--ERVMEEDKLSPREATIKSMKE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + ++ LPMA + GS F+I + ++++ ++ ++ + + Sbjct: 439 ITSALIGIAVVLSAVFLPMAFFSGSTGVIYRQFSITIVSSMILSVIVALTLSPALCATLL 498 Query: 825 D 825 Sbjct: 499 K 499 Score = 64.3 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 75/234 (32%), Gaps = 9/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + + G S F+G ++ V+ G S Sbjct: 787 VRGSGNTMTPFSAFSDSNWTYGPSSLSRFNGLASYQVQGAAANGVSSGAAMDEMENLADQ 846 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + +++ + + + W I + L Sbjct: 847 LPKGASYAWSGLSYQERQSSGQTQMLYAISILVVFLCLA---ALYESWTVPFSVIMVIPL 903 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T L G+E ++ A+LT IG S + +++ + + Y + + Sbjct: 904 GVLGTAAAAYLRGLENDVYFQVALLTTIGLSSKNAILIVEFAEE---AYRRGATVWEAAK 960 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + L + TS+A + LP+A+ G + S + G + A +I Sbjct: 961 EGATLRLRPIIMTSLAFIVGTLPLALSTGAGANSRISIGSGIVGGTLTATLLAI 1014 >gi|71065834|ref|YP_264561.1| preprotein translocase subunit SecD [Psychrobacter arcticus 273-4] gi|71038819|gb|AAZ19127.1| protein-export membrane protein SecD [Psychrobacter arcticus 273-4] Length = 625 Score = 197 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 152/527 (28%), Positives = 260/527 (49%), Gaps = 41/527 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG VLEVD D + L S ++R L+ E I Sbjct: 103 NLAQTTPQWLRDIGAKPMKLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAERI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 V ++ + + L F+D+ + + + + + + + + Sbjct: 163 AVKGIKNDKRTVVLHFSDTDNRNRAQNVLQSSIGNTFTL-------QSSIDEQGPALILA 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + +D++ S+A+ Q++ +R RI ++G++E+ +Q G+ RI+++LPG QD + +++L Sbjct: 216 YNDATLDEINSYAVNQNLNTLRNRIAELGVTEALVQSQGASRIVVELPGVQDTAEAKRVL 275 Query: 207 GTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V DG L+E + ++G + Sbjct: 276 GRTANLEFRMVAEGAENYTGGIPPAGTEAFPFETLDGPPVLLERQAIVTGDKVTN-AQTG 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296 ++ P V I+ D G + TR +GK + Sbjct: 335 IDESGSPEVSITLDNAGGKLMQNATRTAVGKQMAVVFIENKQRVTYKEDSATGETVEVRT 394 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + QA+ +I+G + A LA +LR+G+L + VEER +G L Sbjct: 395 PYAETKVINRANIQAVLGSSFRITGLDSSAEAAELALLLRSGALAAPMYFVEERTIGPSL 454 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G ++I KG + G +L+ FMI+ Y +G++A+ ++ +NVI+ ++++S+LG++LTLP Sbjct: 455 GQENIDKGLFSTQVGYLLVFAFMIIFYRLFGVIANIALAVNVIIIISIMSILGSSLTLPG 514 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL IG+AVD+N+L+ ERIREE ++ GF RAYS+IFD+NIT L+ + Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREELANGVRPKSAIVAGFDRAYSSIFDANITTLLVAFI 574 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 LF G G ++GFAIT+ + I+ S+FTAI + RA++ +K Sbjct: 575 LFSIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRKSIKR 621 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 77/185 (41%), Gaps = 4/185 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +GP + +E I KG+ + + + ++ I ++ F + A L +++ + Sbjct: 442 MYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFMIIFYRL-FGVIANIALAVNVIIII 500 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ G L +A ++ IG +V+ V++++R+R+ + + I + Sbjct: 501 SIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREELANGVR---PKSAIVAGFDRA 557 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ + + G I FAI +A GIV + ++I + ++ Y R Sbjct: 558 YSSIFDANITTLLVAFILFSIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRK 617 Query: 829 KNARI 833 R+ Sbjct: 618 SIKRL 622 >gi|284923280|emb|CBG36374.1| acriflavin resistance protein F [Escherichia coli 042] Length = 1034 Score = 197 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G+L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 KRNGDKN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|227113439|ref|ZP_03827095.1| preprotein translocase subunit SecF [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 324 Score = 197 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 167/301 (55%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L FMR IS L I SI ++ G N+G+DF GG + + + Sbjct: 7 YNIEQLNHGRKVHDFMRWDTLAFAISGLLIIASIAIMGVRGFNWGLDFTGGTVIEINLEK 66 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P+DL V+RS+LE+ + QNF ++ +VR+ G S + +++K Sbjct: 67 PIDLDVLRSSLETSGFSEPQVQNFGSSRDVMVRMPPVSG-SENEALGNKVLKVVNDTFQQ 125 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+LIYI RF+W A+ A+ L D T Sbjct: 126 HATVKRIEFVGPSVGSDLAQAGALALLSALIAILIYIGFRFEWRLAMSAVLALAHDAIIT 185 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +G +LF IE +LT +A+++++IGYS+NDK+VV DR+R+N + + ++ + S+ + Sbjct: 186 MGLLSLFSIEIDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKVRRGTPY-EITNISLTQ 244 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS ++ + V+GG+++ F++ M G+++ SSI++++ + L + R Sbjct: 245 TLHRTIITSATTLAMIVILMVFGGALLHGFSLTMFIGVIIGTISSIYVSSALALKLGMKR 304 Query: 828 A 828 Sbjct: 305 E 305 >gi|219871165|ref|YP_002475540.1| preprotein translocase subunit SecD [Haemophilus parasuis SH0165] gi|219691369|gb|ACL32592.1| preprotein translocase subunit SecD [Haemophilus parasuis SH0165] Length = 603 Score = 197 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 158/523 (30%), Positives = 272/523 (52%), Gaps = 39/523 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + GLDLRGG ++EVD + + D LR+ +KE Sbjct: 93 NLAPATPEWLTSIGGEPMKRGLDLRGGVRFLMEVDMNTALAKQQDQLQDTLRNDFRKEKW 152 Query: 87 GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 ++++ +N T + F D+ + + N L +V + + Sbjct: 153 QYKAVKKAENFATDVEFNDTDTADKAVRYIRRT----NPNLEATYISPTVVRFAQSAQGL 208 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R +++ Sbjct: 209 -------ATSRDLAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEI 261 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260 LG TA + F V N + + G+ DG ++ K + G H+ + Sbjct: 262 LGATATLEFRLVNGNANLESAARGIVPADSEIKYSRDGMPTVLYRKTILGGEHI-INATS 320 Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302 + P V I+ D G T+ +GKP+A + Sbjct: 321 GKDERGLPNVSINLDAQGGDLMSNATKSAVGKPMATLYSEFKDSGRRDANGKVILEKHEE 380 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + QI+G + A LA +LR+G+L + IVEER +GA LG+D++ Sbjct: 381 VINVATINSRLGSSFQITGINSAAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A + GL L +LF +V Y +GL A ++ N++LT+ L+SL+GATLT+P IAGIVL Sbjct: 441 QGMDASMLGLGLTILFCVVYYKVFGLFATAALLANLVLTIGLMSLIGATLTMPGIAGIVL 500 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +G+++D+N+L+ ERI+EE R +S+ ++ G++ A+++IFDSN+T ++ ++L+ G Sbjct: 501 AVGMSIDANVLIYERIKEEIRNGRSIQQAIHEGYNGAFTSIFDSNLTTILVAIILYAVGT 560 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G V+GFA+T+ L ++ISMFTAI+ R ++ + K++K + I Sbjct: 561 GPVKGFAVTLALGVMISMFTAITGTRMLVNLVYGGKRVKKLWI 603 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 81/176 (46%), Gaps = 4/176 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + + + +G+ ++ +++ + +K F L A L+ ++ T+G +L G Sbjct: 429 TIGASLGADNVAQGMDASMLGLGLTILFCVVYYKV-FGLFATAALLANLVLTIGLMSLIG 487 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 + +A ++ +G S++ V++Y+R+++ ++ S + I + N + Sbjct: 488 ATLTMPGIAGIVLAVGMSIDANVLIYERIKEEIR---NGRSIQQAIHEGYNGAFTSIFDS 544 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ + + + G + FA+ +A G++++ ++I ++ +Y + Sbjct: 545 NLTTILVAIILYAVGTGPVKGFAVTLALGVMISMFTAITGTRMLVNLVYGGKRVKK 600 >gi|294665295|ref|ZP_06730588.1| multidrug efflux transporter [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604931|gb|EFF48289.1| multidrug efflux transporter [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1047 Score = 197 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 68/689 (9%), Positives = 175/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L + ++P+ P + + + Sbjct: 8 RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPAIAPPA-------------VAITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + +K + S ITL+F + + +V Sbjct: 50 PGASAQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ + T + + + + S + + I Sbjct: 110 KLSLATPLLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L T + N G + Sbjct: 170 EGVGDTTLFGSQ-YAMRVWMDPNKLSNFSLTPVDVRNAIQAQNAQISAGQLGALPAVANQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + + I Sbjct: 229 QLNATITAQTRL-------------KTAEQFENILLRTQSDGSQVRLRDVARIELGSESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T+ P Sbjct: 276 NTVGRYNGRPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +L+ G T+ ++ Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMGEEQLSPKDATRKSMDQISGALIGVALVLAAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSI 523 + FF G R F+IT+ ++ +S+ A+ + A+ +++ Sbjct: 456 MAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVSKGHGLATTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + + + + L ++ + + +G + + V Sbjct: 516 NRLFDRGNTGYQGVVRHMLGKGWRYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ ++ + Q F V G ++ Sbjct: 576 QLPPGATNARTSDVLKQVEHHFLVDQKESVAGVFAVTGFSFAGSGQNVGFAFVKLRPWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 ++ + + + Sbjct: 636 RTGKGQSVTDVAAKAGAFFAGIRDAKVFA 664 Score = 76.7 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 89/243 (36%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + L +++ R ++ ++ + Sbjct: 258 SQVRLRDVARIELGSESYNTVGRYNGRPAAGLAIKLATGANALDTVRAIDKSLEEQEKFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P R I + + ++ + + + + +++ + + L + + + Sbjct: 318 PPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + A++ IG V+D +VV + + + +S +D KS+ Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMGEEQLSPKDATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 ++ G + ++ +PMA + GS F+I + + ++ ++ + + Sbjct: 436 DQISGALIGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 78/266 (29%), Gaps = 10/266 (3%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + A V + + + N L Sbjct: 776 PYRMNPQDIDHWFVRNSAGTMVPFNAFATASWQSGSPRLERYNSVPSMEILGMALPGAAS 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 S +++E K+ + + + + G++ + I L + Sbjct: 836 SGEAMQIVEAAAAKLPPGIGF----EWTGLSRQEKASSGQTGLLYSVSILIVFLCLAALY 891 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W I + L + TL L ++ +LT IG + + +++ + R+ Sbjct: 892 ESWAIPFSVILVVPLGVFGTLLAAMLTWKMNDVYFQVGLLTTIGLASKNAILIVEFARE- 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804 L+ S ++ L + TS+A + V+P+ + G + + G Sbjct: 951 --LHEGGKSLVAAALEAARMRLRPILMTSLAFILGVVPLVLTSGAGAGAQHALGTAVIGG 1008 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 +V +IF + + + Sbjct: 1009 MVSGTVLAIFFVPLFFVLVCGLFQRR 1034 >gi|26987571|ref|NP_742996.1| preprotein translocase subunit SecD [Pseudomonas putida KT2440] gi|24982246|gb|AAN66460.1|AE016275_5 protein-export membrane protein SecD [Pseudomonas putida KT2440] Length = 620 Score = 197 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 166/525 (31%), Positives = 271/525 (51%), Gaps = 41/525 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + + LGLDL GG H +LEVD D + +++Y E+++ L+KE + Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERV 165 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S+ Q I L FAD +E + D + + Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFN--------DFDLTTTDRNELAVLRLA 217 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 L+Q + ++ ++I+Q++ +R R++++G++E +QR G++RI+++LPG QD + +++L Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F + K F G VE + I+G + A A+FD Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAAVERGLIITGDQVTDAQASFDEHG- 334 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308 +P V+I D G TR N+G+ +AV+ + + Sbjct: 335 RPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVE 394 Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 Q+ + +I+G + LA +LRAG L + EER +G LG+D Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I KG A + G++ + LF+I +Y +G++A ++ N++L LAL+SLLGATLTLP IAG Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAG 514 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RIREE SV ++ GF+RAYS I D+N+T L+ +LF Sbjct: 515 IVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFA 574 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G G V+GFA+TM L I SMFTA+ + RA++ + +K + Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKLW 619 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 89/250 (35%), Gaps = 5/250 (2%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V + + + + ++ L G + + + Sbjct: 372 VTRYVKQAVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 + +GP + + I KGI + + + ++I ++ F + A L Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-AFGVLATIALA 490 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A ++ +G +V+ V+++ R+R+ + +S + I Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMSVQRAI 547 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820 + N V ++ + + G + FA+ M+ GI + +++ + ++ Sbjct: 548 HEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVN 607 Query: 821 LFIYDWRAKN 830 L K Sbjct: 608 LTCGGRDIKK 617 Score = 48.9 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 35/385 (9%), Positives = 94/385 (24%), Gaps = 28/385 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + W L ++ +G + + PN P + A +++ + D Sbjct: 4 KYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVN-------------QAD 50 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117 D + + L ++G G+ + ++++ + A + Sbjct: 51 LDRVSKALVDAKIAVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQT 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + ++ + A+ M++ + + Sbjct: 111 T--------PQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRK 162 Query: 178 ESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234 E R I++ + + R L+ N + + Sbjct: 163 ERVRYRSLPQQDGGIMLGFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAK 222 Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 ++ +Y ++ + +N + I + G + E R Sbjct: 223 VAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 282 Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354 G A + + I + + + N+ Sbjct: 283 LEFRFGAEPGASKATTEVFEFREGGRSAAVERGLIITGDQVTDAQASFDEHGRPQVNIRL 342 Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFM 379 D + G + V+F+ Sbjct: 343 DGHGGELMSRATRSNVGRSMAVIFI 367 >gi|324009095|gb|EGB78314.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 57-2] Length = 1034 Score = 196 bits (498), Expect = 9e-48, Method: Composition-based stats. Identities = 71/664 (10%), Positives = 179/664 (26%), Gaps = 51/664 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + DP L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDPDLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIV 646 Sbjct: 635 ERSG 638 Score = 74.3 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I++ + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + R+ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|260900465|ref|ZP_05908860.1| protein-export membrane protein SecD [Vibrio parahaemolyticus AQ4037] gi|308106970|gb|EFO44510.1| protein-export membrane protein SecD [Vibrio parahaemolyticus AQ4037] Length = 612 Score = 196 bits (498), Expect = 9e-48, Method: Composition-based stats. Identities = 156/513 (30%), Positives = 272/513 (53%), Gaps = 27/513 (5%) Query: 25 NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84 F S+ + + M + I LGLDLRGG +L VD + DE+++ L+ + Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALIDEIKANLRDQ 172 Query: 85 GIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143 + +R + N+IT+ + E +V FL+ + ++ + Sbjct: 173 RVRGVQVRAESGNRITV----NSDSEQALSEVNKFLRQNYPS--------WISKSSSRGF 220 Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203 + S+ NI + S ++Q+++I+R RI+++GI+E+ +QR G I I+LPG QDP++ + Sbjct: 221 VLEPSEQNIQEFQSSTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 280 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 ++G TA ++F++V + + L+D+DG ++ + ++G H+ A A D Sbjct: 281 NVIGATASLAFYEVKD--ASQAHSSQDLVLQDNDGRTVILAKRPVLTGEHIVNARAGVDK 338 Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312 V G + V R+ V + + Q+ Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERVISVATIQSQ 398 Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372 + +I+G +++ A LA +LRAGSL + IVEER +GA LG+++I G A+ G+ Sbjct: 399 LGSQFRITGAGSMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGM 458 Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431 L + FM + Y + G VA+ ++ N++ L L++LL A LTLP IAG+VL +G+AVD+N Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +++ ERI+++ R+ +S ++D+GF A+STI D+NIT +I V+L+ G G ++GFA+T Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALT 578 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +GL +L SMFT + RAM+ I + + Sbjct: 579 LGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 611 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + TI +G + E I G + + L ++ + + Sbjct: 410 SMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 469 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L ++ LG AL G L +A ++ +G +V+ V++++R++ Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 M+ SF ID + + ++ I+ + + G I FA+ + G++ Sbjct: 529 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 585 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + + +F + ++ I+ A+ Sbjct: 586 SMFTGVFASRAMINLIWGRDARR 608 >gi|293416691|ref|ZP_06659330.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli B185] gi|300925989|ref|ZP_07141812.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 182-1] gi|301326291|ref|ZP_07219664.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 78-1] gi|291432047|gb|EFF05030.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli B185] gi|300417933|gb|EFK01244.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 182-1] gi|300846992|gb|EFK74752.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 78-1] gi|323946887|gb|EGB42903.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H120] Length = 1034 Score = 196 bits (498), Expect = 9e-48, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|193066461|ref|ZP_03047506.1| acriflavine resistance protein F [Escherichia coli E22] gi|194430246|ref|ZP_03062743.1| acriflavine resistance protein F [Escherichia coli B171] gi|260846071|ref|YP_003223849.1| multidrug efflux system protein [Escherichia coli O103:H2 str. 12009] gi|260857393|ref|YP_003231284.1| multidrug efflux system protein [Escherichia coli O26:H11 str. 11368] gi|300904460|ref|ZP_07122306.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 84-1] gi|301304266|ref|ZP_07210380.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 124-1] gi|192925890|gb|EDV80539.1| acriflavine resistance protein F [Escherichia coli E22] gi|194411717|gb|EDX28042.1| acriflavine resistance protein F [Escherichia coli B171] gi|257756042|dbj|BAI27544.1| multidrug efflux system protein [Escherichia coli O26:H11 str. 11368] gi|257761218|dbj|BAI32715.1| multidrug efflux system protein [Escherichia coli O103:H2 str. 12009] gi|300403622|gb|EFJ87160.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 84-1] gi|300840392|gb|EFK68152.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 124-1] gi|323154485|gb|EFZ40686.1| inner membrane protein [Escherichia coli EPECa14] gi|323162951|gb|EFZ48786.1| inner membrane protein [Escherichia coli E128010] Length = 1034 Score = 196 bits (498), Expect = 9e-48, Method: Composition-based stats. Identities = 70/689 (10%), Positives = 185/689 (26%), Gaps = 51/689 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671 ++ + ++ ++ Sbjct: 635 ERNGDENSAEAVIHRAKMEFGKIRDGFVI 663 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|170723503|ref|YP_001751191.1| preprotein translocase subunit SecF [Pseudomonas putida W619] gi|169761506|gb|ACA74822.1| protein-export membrane protein SecF [Pseudomonas putida W619] Length = 302 Score = 196 bits (498), Expect = 9e-48, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 159/287 (55%), Gaps = 5/287 (1%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 I FM R I++L ++ ++ + GLN+G+DF GG + + RP DL VR+ Sbjct: 1 MKTINFMGVRNVAFAITVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L D Q+F + LVR+ + +T++ E Sbjct: 61 ELVESGFQDAVVQSFGATTDLLVRMPGDDPMLGNKVAEALQKI----GGDNPATVKRVEF 116 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VGP++ EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ TLG + F I Sbjct: 117 VGPQVGEELRDQGGLGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQI 176 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 F+LT +AAVL +IGYS+ND +VV+DR+R+N ++ S + I+ S +TL R+V TS Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINISTTQTLLRTVATS 235 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 ++ +++ + +GG + F++ + G++ SSI+IA +L+++ Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282 >gi|292487494|ref|YP_003530366.1| multidrug efflux transporter [Erwinia amylovora CFBP1430] gi|33520756|gb|AAQ21216.1| multidrug efflux transporter [Erwinia amylovora] gi|291552913|emb|CBA19958.1| multidrug efflux transporter [Erwinia amylovora CFBP1430] Length = 1048 Score = 196 bits (498), Expect = 9e-48, Method: Composition-based stats. Identities = 68/684 (9%), Positives = 176/684 (25%), Gaps = 43/684 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L L + ++++P+ P + Sbjct: 8 RPIFAWVIAIIVMLAGTLSIL-----KLPIEQYPNVAPPAIE---------ITATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + S ++TL+F + +V LQ Sbjct: 54 AKTLQDSVTQVIEQNMNGIDGLMYMGSSSDSSGTLQLTLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ D + S + D + Sbjct: 114 ATPLLPQEVQQQGISVQKSSSSFLMVAGFINDSGTMTQNDISDYVGSNIKDPLSRVSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L T + N G Sbjct: 174 DTQLFGAQ-YAMRIWMDPHKLNNYQLTPVDVISAINTQNAQVAAGQLGGSPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + R +I Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNADGSRVRLSDVAHIELGGENYEVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T L + S + Sbjct: 280 RYNGQPASGLGIKLATGANALDTAAAVKAELVKLEPFFPSGLKVVYPYDTTPFVKISINE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A++S G ++ ++ G+V Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKSMDQIQGALVGIALVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVIVALILTPALCATMLKPINKGDHGKTTGFFGWFNRLF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + V ++ + L + +G Sbjct: 520 DKSTHHYTDSVGHIVRSTGRYLVIYLLIVVGMAFLFLRLPTSFLPEEDQGVFLTMAQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + ++ + + F V G +K Sbjct: 580 GATQERTQKVLDQVTDYYLNKEKTNVNSVFTVNGFGFAGRGQNTGLAFVSLKPWDERSGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671 + + + ++ Sbjct: 640 ENKVPAITGRAMGALSAIKDAMVI 663 Score = 75.9 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 89/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V LS V + ++ + + L +++ ++ K+ Sbjct: 258 SRVRLSDVAHIELGGENYEVIARYNGQPASGLGIKLATGANALDTAAAVKAELVKLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + + + + +++ + + L + + + Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G V ++ +PMA +GGS F+I + +V++ ++ + + Sbjct: 436 DQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALILTPAL 492 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 7/193 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G A E + L T + G L + IS I + + + Sbjct: 828 GQPAAGKSSGEAMNLMQELASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L F L G+ ++ V +LT IG S + +++ + Sbjct: 888 AALYESWSIPFAVMLVVPLGVIGALIFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEF 947 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + M+ + +++ L + TS+A + VLP+A+ G + Sbjct: 948 AKDLMEKEGKG--LVEATLEAVRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTG 1005 Query: 801 MAFGIVVAASSSI 813 + G+V A +I Sbjct: 1006 VMGGMVTATVLAI 1018 >gi|222034982|emb|CAP77725.1| acriflavine resistance protein F [Escherichia coli LF82] gi|312947823|gb|ADR28650.1| multidrug efflux system protein [Escherichia coli O83:H1 str. NRG 857C] Length = 1034 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G+L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + R+ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|218689284|ref|YP_002397496.1| putative efflux pump [Escherichia coli ED1a] gi|218426848|emb|CAR07700.2| Putative efflux pump (Putative multidrug-efflux transport protein) [Escherichia coli ED1a] Length = 1035 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 77/683 (11%), Positives = 186/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G D+ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 V IGL VD I+V E + R + + + + + + F Sbjct: 400 VQAIGLLVDDAIVVVENVERIMRDEGLPAPEATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592 Q R + + + L L ++ V P + Sbjct: 520 EDKYQRGVIYVLRRTARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 74.7 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + + +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVQAIGLLVDDAIVVVENV--ERIMRDEGLPAPEATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 42.0 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYD 825 + + Sbjct: 1020 FVLVKR 1025 >gi|77918704|ref|YP_356519.1| AcrB/AcrD/AcrF family cation efflux protein [Pelobacter carbinolicus DSM 2380] gi|77544787|gb|ABA88349.1| cation/multidrug efflux pump of the AcrB/AcrD/AcrF family [Pelobacter carbinolicus DSM 2380] Length = 1060 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 79/696 (11%), Positives = 190/696 (27%), Gaps = 56/696 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I +G L ++++P P + + Sbjct: 10 RPIFATVLSVLIVIVGGLA-----YFSLPIEQYPQVAPPT-------------IEITATY 51 Query: 63 DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + + + EG+ + + +T++FA + V Sbjct: 52 PGANAETVAATVATPIEQEVNGVEGMLYMFSQSTSDGRMTLTITFALGTDLDTAQVLVQN 111 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + +L + ++ + T +++ + +D+I Sbjct: 112 RVAVAEPRLPEEVRRLGITTKKNTPDLMLVVNMYSPDGTYDQTYIGNYAVLNILDRIRRI 171 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP R++ T + N G + Sbjct: 172 DGVGNVRLFGASEYAMRIWLDPDRIQSFGMTPGDVLDALRAQNVQVAGGALNQAPQPKQN 231 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 +Y+V+ + + + I R + I Sbjct: 232 YYEYVVQTQGRL-------------KAPEEFGDIIVKSGENGRIVYLRDIARIELGAQDY 278 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + + T + + P + Sbjct: 279 ATKGYLGKYPAVALPAYQRPGSNALETADAIIKEMREIGKDFPPGLQYDIAYNPTQFIEE 338 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LVLIV+ + + + ++ +I +++I T A+++ LG +L ++ Sbjct: 339 SVVAVQHTVYEAIVLVLIVIVLFLQTWRAAIIPIVAIPVSLIGTFAVMAALGFSLNTLTL 398 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ VD I+V E + R S + + S + + + + Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERNMRAGLSPRDAARKTMTEVGSALVAIGLVLVAVFLPT 458 Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 F G G + F IT+ ++ +IS+F ++++ A+ +++ + + L Sbjct: 459 IFLGGLSGKFYQAFGITIAVATMISVFVSLTLSPALAAILMKPGDHDTHGPGRWYKTPLR 518 Query: 535 PDCIAIQFMRAR-----------------FWGVGISILFSICSICLLFTHGLNYGIDFKG 577 + + L ++ +G Sbjct: 519 FFFHYFNTGMEWLSDRYGRLVGKLVFLGGPVLLLYAGLMALTGWQFDRVPSGFIPPMDQG 578 Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637 + V LS ++ ++ D F ++ + Sbjct: 579 YAIVSVELPPGASLSETDKVVQVATRKLLAIDGVDDVIGFAGFSGATRANASNAAGLFPT 638 Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 +K T ++ + IV + Sbjct: 639 LKPFKEREKKGITFESLLQKMRTEMATIKEASIVVI 674 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 48/450 (10%), Positives = 133/450 (29%), Gaps = 30/450 (6%) Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI--REENRKNQSVFCSLDMGFSRAYST 462 L + + AG + + + +E K F SL +T Sbjct: 606 LLAIDGVDDVIGFAGFSGATRANASNAAGLFPTLKPFKEREKKGITFESLLQKMRTEMAT 665 Query: 463 IFDSNITAL-------IATVVLFFFGGGAVRGFAITMGLSILISMFTAISI-----VRAM 510 I +++I + I + + G + S + +M A + R++ Sbjct: 666 IKEASIVVIPPPPVRGIGSAGGYRMMIQDRGGRGVDALNSAVWAMAEAANGPGTPETRSV 725 Query: 511 MIFI--IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 F + ID R + + + + Sbjct: 726 FTFFEKNTPQTFLDIDREKAERLHVPVSRAYEALEVFIGSAFVNDFNYLGRTFRVTAQAD 785 Query: 569 LNYGIDFKGGIQLGVLANR--PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 Y + + +++ V ++ V L + + + N + Sbjct: 786 APYRLSAEDMLRIKVRSDDGAMVPLGSIARVHNAAGPSRMPRYNLYPSAALIGDTAPGYS 845 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 A + + K + E + + ++ +++ + + + + Sbjct: 846 SGQALEAMERLADKVLPEGIGY-----EWTELAYQQKATGNTAVIAFVLAVVFVFLLLAA 900 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 +++ W L I + + + + AL G++ N+ + L+G + + +++ + R Sbjct: 901 QYESWTLPLSVILIVPMCLLSAISGVALMGMDNNVLTQIGFVVLVGLACKNAILIVEFAR 960 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802 + + ++ + L + TS A + V+PM + G + + + + Sbjct: 961 ELERQGRDRW---QAAVEAAHLRLRPILMTSFAFILGVVPMVLAQGAGAEMRRALGVAVF 1017 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G++ + + + Sbjct: 1018 SGMLGVTFFGLVFTPVFYVLCRKLSLIRVK 1047 Score = 58.5 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 4/130 (3%) Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 W A+ I + + + T A G N + ++ IG V+D +VV + M +NM+ Sbjct: 365 WRAAIIPIVAIPVSLIGTFAVMAALGFSLNTLTLFGLVLAIGIVVDDAIVVVENMERNMR 424 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809 +S RD K++ E V + LP GG F I VA Sbjct: 425 A---GLSPRDAARKTMTEVGSALVAIGLVLVAVFLPTIFLGGLSGK-FYQAFGITIAVAT 480 Query: 810 SSSIFIAAPI 819 S+F++ + Sbjct: 481 MISVFVSLTL 490 >gi|331654864|ref|ZP_08355864.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli M718] gi|331048246|gb|EGI20323.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli M718] Length = 1034 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|296282527|ref|ZP_06860525.1| hydrophobe/amphiphile efflux-1 HAE1 [Citromicrobium bathyomarinum JL354] Length = 1081 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 80/647 (12%), Positives = 171/647 (26%), Gaps = 46/647 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I G L L ++++P P L + V Sbjct: 8 RPIFAWVVSLGILLAGFLA-----LRALPIEQYPEVAPP-------------SLTISVVY 49 Query: 63 DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + L + S+ IT++F + +V Sbjct: 50 PGADAETLEENVTQVIEQQLNGVDGFLYMSSSSISNGTATITVTFEAGTDIDIAQTEVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L V ++L + ++ + +++ + Q +D++ Sbjct: 110 RLSTVEARLPEEVRRQGITVRQANSGFLMIVALTSKGGQYDTNDLGNIASTQVVDELRRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP L + + + N G G + L D Sbjct: 170 NGVGDVQLFGS-EYAMRIWLDPDALASYKLSPSAVLAAIREQNAQTAGGSIGAQPLADGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + I GA + Sbjct: 229 QITATISTDGRFT-------------TAEEFENIILRASNGAAVVRLGEVARVEIGAQTY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + + E + G + Sbjct: 276 ASSTALNGKPMAGMAVQLATGANALAAAEGVKERLEEIAPGLPGDVTWSIPYDTTPFVEA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + L+ + + + L L G ++ + S+ Sbjct: 336 SVEEVVKTLVEAMFLVFLVMFLFLQNWRATLIPTLVVPIALAGACLGLWLFGFSINVLSL 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + + + I + + + Sbjct: 396 FGMVLAIGILVDDAIVVIENVERIMREEGLPPVQATRKAMGQISGAIIGITLVLVAVFLP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FF G R F++T+ ++I S F A+S+ A+ +K I+ + Sbjct: 456 MAFFPGSTGGIYRQFSVTLAIAIFFSAFLALSLTPALCATF-----LKPIEKGHDHATEI 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 D A R + + ++ R + + + Sbjct: 511 EVDEEAEAQPGWRGRLARARGKSARFFARFNRWFARMQEKYGRANDRILSRPFRALAVFL 570 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + + L + E + Q Q R E ++ Sbjct: 571 ALALVTVLLFMRLPTAFLPTEDQGYLITAVQAPPGATQERTDEALEP 617 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%) Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666 + + G L + LE + + V S +T E++ Sbjct: 282 NGKPMAGMAVQLATGANALAAAEGVKERLEEIAPGLPGDVTWSIPYDTTPFVEASVEEVV 341 Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 + + + + + M +++ W L + + + LFG N+ ++ + Sbjct: 342 KTLVEAMFLVFLVMFLFLQ---NWRATLIPTLVVPIALAGACLGLWLFGFSINVLSLFGM 398 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 + IG V+D +VV + + + + K++ + G + ++ LPM Sbjct: 399 VLAIGILVDDAIVVIENV--ERIMREEGLPPVQATRKAMGQISGAIIGITLVLVAVFLPM 456 Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 A + G + F++ +A I +A ++ + + Sbjct: 457 AFFPGSTGGIYRQFSVTLAIAIFFSAFLALSLTPAL 492 Score = 60.9 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 63/160 (39%), Gaps = 8/160 (5%) Query: 676 SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 S + + + + ++ W L + + + + + F G+ ++ ++T+IG + Sbjct: 901 SVVIVFLVLAALYESWAVPLAVLLIVPMGVLGAVLFSMFRGLSADVYFNVGLITIIGLAA 960 Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV 793 + +++ + + + I D + + L + TS+A + ++P+ G Sbjct: 961 KNAILIVEFAIEEEQRGLRRI---DAVKAAAKLRLRPIIMTSLAFTMGMVPLVLASGAGA 1017 Query: 794 IGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAKNA 831 A+ G++ A IF+ P+L + + Sbjct: 1018 ASRIAVGTGVMGGMIAATVLGIFLI-PMLYLLVRRKISRK 1056 >gi|260072734|gb|ACX30630.1| preprotein translocase subunit SecD [uncultured bacterium ARCTIC96BD-19] Length = 615 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 164/519 (31%), Positives = 283/519 (54%), Gaps = 36/519 (6%) Query: 32 LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + ++ S++ +SLGLDLRGG H +LEVD + + Y +ELR+ L+K+ + + Sbjct: 108 IPQWLSSLGGRAMSLGLDLRGGVHFLLEVDMNAVTAMAMDRYYNELRATLRKDKL-YKKI 166 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 ++ ++ + +SF K + S L E I S + Sbjct: 167 QKNEDILLVSFKTEELKNKAKKVIK-------SDLPDLIIAEGSEQELELGYEISSSAQS 219 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 ++ A++Q++ +R R++++G++E IQ+ G+ RI++QLPG QD +R +++LG A Sbjct: 220 AAKL--SALKQNITTLRNRVNELGVAEPIIQQQGTERIVVQLPGVQDTARAKEILGAVAT 277 Query: 212 MSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 + F V N + G + + DG L++ V +G ++ ++ + Sbjct: 278 IEFRMVDEKNDVQTAIQSGKTPAGSKIYKFKDGRPLLLKTNVITTGENIVD-ASSSMDEN 336 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLTAP 306 ++P V I D G R + T++ IG + + + Sbjct: 337 NQPSVSIVLDSSGGRSMLDTTKEFIGYRMAVVFIENKVETVLEDGIAVKKRSKTQDIINA 396 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q S + QI+G + A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 397 ATIQGTFSNRFQITGLDSSREATNLALLLRAGSLSAPVEIIEERTIGPSLGADNIQKGLI 456 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G L+++FM Y +GLVA+ ++ +N++ +++LSL+ ATLTLP IAGIVL +G+ Sbjct: 457 SVLVGFALVLVFMAWRYRVFGLVANLALTINLVTIVSILSLIQATLTLPGIAGIVLTVGM 516 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 AVD+N+L+ ER++EE R +++ ++ G+ +A TI D+NIT LIA++VLF FG GA++ Sbjct: 517 AVDANVLIFERVKEELRATKNIQKAISAGYEKALLTIADANITTLIASIVLFSFGTGAIK 576 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GFA+T+ + I+ SMFTAI + RA++ I KK++ + I Sbjct: 577 GFAVTLSIGIITSMFTAIIVSRAVINIIYGGKKIEELAI 615 Score = 150 bits (378), Expect = 9e-34, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 103/254 (40%), Gaps = 4/254 (1%) Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 F G V V+ + + N + G ++ Sbjct: 360 FIGYRMAVVFIENKVETVLEDGIAVKKRSKTQDIINAATIQGTFSNRFQITGLDSSREAT 419 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + + + I +GP + + I+KG++ V++ +L+++ R++ F L Sbjct: 420 NLALLLRAGSLSAPVEIIEERTIGPSLGADNIQKGLISVLVGFALVLVFMAWRYRV-FGL 478 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 A L +++ + +L L +A ++ +G +V+ V++++R+++ ++ + Sbjct: 479 VANLALTINLVTIVSILSLIQATLTLPGIAGIVLTVGMAVDANVLIFERVKEELRA---T 535 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 + + I + L ++ I+ + + +G I FA+ ++ GI+ + ++I Sbjct: 536 KNIQKAISAGYEKALLTIADANITTLIASIVLFSFGTGAIKGFAVTLSIGIITSMFTAII 595 Query: 815 IAAPILLFIYDWRA 828 ++ ++ IY + Sbjct: 596 VSRAVINIIYGGKK 609 >gi|157162747|ref|YP_001460065.1| acriflavine resistance protein F [Escherichia coli HS] gi|194440028|ref|ZP_03072085.1| acriflavine resistance protein F [Escherichia coli 101-1] gi|312972465|ref|ZP_07786639.1| acriflavine resistance protein F [Escherichia coli 1827-70] gi|157068427|gb|ABV07682.1| acriflavine resistance protein F [Escherichia coli HS] gi|194421032|gb|EDX37062.1| acriflavine resistance protein F [Escherichia coli 101-1] gi|310334842|gb|EFQ01047.1| acriflavine resistance protein F [Escherichia coli 1827-70] gi|323941641|gb|EGB37820.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli E482] gi|323970319|gb|EGB65589.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli TA007] Length = 1034 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|320202175|gb|EFW76750.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli EC4100B] Length = 1034 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 70/689 (10%), Positives = 185/689 (26%), Gaps = 51/689 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671 ++ + ++ ++ Sbjct: 635 ERNGNENSAEAVIHRAKMEFGKIRDGFVI 663 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|188492799|ref|ZP_03000069.1| acriflavine resistance protein F [Escherichia coli 53638] gi|188487998|gb|EDU63101.1| acriflavine resistance protein F [Escherichia coli 53638] Length = 1034 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|146308731|ref|YP_001189196.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas mendocina ymp] gi|145576932|gb|ABP86464.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pseudomonas mendocina ymp] Length = 1047 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 72/689 (10%), Positives = 181/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + ++++PS P + ++V Sbjct: 8 RPIFAWVIALVIMLAGGLSIL-----KLPINQYPSIAPPA-------------VAIQVSY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + + L + S +I ++F + +V Sbjct: 50 PGASAQTVQDTVVQVIEQQLNGLDGLRYVSSSSNSDGSMEIIVTFEQGVNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + T +++ + S I+ D I + Sbjct: 110 KLQLATPLLPQEVQQQGIRVTKSVRNFLMVIGVVSKDGSMTREDLSDYIVSNLQDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + N FG + Sbjct: 170 KGVGDFQVFGAQ-YAMRIWLDPAKLNAFQLTPVDVRSAIQAQNVQISSGQFGGLPAAPGN 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + K + + + + + + Sbjct: 229 QLNATIIGKTRL-------------QSPEEFRKILLKVQADGSQVRLDDVAKVELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T + A L + Sbjct: 276 AINAQFNGLPASGLAIRLATGANALDTAKAVRETIATLEPFFPAGMEVVFPYDTTPVISA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + ++ ++ + ++ T +L+ G ++ ++ Sbjct: 336 SIEGVVHTLFEAIVLVFLVMFLFLQNLRATIIPTMAVPVVLLGTFGVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMREDGLSPKEATRKSMGQIQGALIGIALVLSAVFLP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++ +S+ A+ A+ + + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALIFTPALCATLLKPIDGEHHEAKRGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R + + + ++ + + +G + V Sbjct: 516 NRTFDRTSNAYQRGVAGMLKRKAPYLLLYLAIVAVMAFMFSRIPTAFLPEEDQGVLFAQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + ++ ++ + + + F V G + M+K Sbjct: 576 QTPSGSSAERTQVVVDEMRQYLLEEEASTVKSVFTVTGFNFAGRGQSSGMAFIMLKPWGE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + + + Sbjct: 636 RPGEENGVAALAQRAQRHFFSFRDAMVFA 664 Score = 79.3 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 84/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + I+ Q + L +++ + + + Sbjct: 258 SQVRLDDVAKVELGGENYAINAQFNGLPASGLAIRLATGANALDTAKAVRETIATLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + +++ + + + + + Sbjct: 318 PAGMEVVFPYDTTPVISASIEGVVHTLFEAIVLVFLVMFLFLQNLRATIIPTMAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + A++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFGVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMREDGLSPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G + ++ LPMA +GGS F+I + + ++ ++ + Sbjct: 436 GQIQGALIGIALVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVLVALIFTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 34/252 (13%), Positives = 75/252 (29%), Gaps = 9/252 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + G ++G + PG S Sbjct: 789 VRNDQGRMVPFSAFASGEWTYGAPKLARYNGVSAVEILGAPAPGYSTGDAMAAVEEIASQ 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + ++ I+ + + + W + + L Sbjct: 849 LPQGVGYSWTGLSYEERLAGSQTTALFVISAIVVFLCLA---ALYESWSIPFSVMLVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 I L F L G+ ++ +LT IG S + +++ + + Y + + Sbjct: 906 GIIGALLFTELRGLSNDVFFKVGLLTTIGLSARNAILIVEFAK---AQYEQGMGLAEAAI 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L V TS+A + LP+A+ G + + G++ A +IF Sbjct: 963 EACRMRLRPIVMTSLAFILGCLPLAIASGAGAGSKHAIGTGVIGGMLSALVLAIFWIPLF 1022 Query: 820 LLFIYDWRAKNA 831 + + K Sbjct: 1023 YVVVCSLFEKKR 1034 >gi|170018491|ref|YP_001723445.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Escherichia coli ATCC 8739] gi|169753419|gb|ACA76118.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli ATCC 8739] Length = 1034 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E++ +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVEKVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV +++ + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEKV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|331646621|ref|ZP_08347724.1| multidrug efflux protein [Escherichia coli M605] gi|331045373|gb|EGI17500.1| multidrug efflux protein [Escherichia coli M605] Length = 1035 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G D+ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASSSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 Q R + + L+ + + ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 42.0 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLFIYD 825 + + Sbjct: 1020 FVLVKR 1025 >gi|238788040|ref|ZP_04631836.1| Acriflavine resistance protein B [Yersinia frederiksenii ATCC 33641] gi|238723988|gb|EEQ15632.1| Acriflavine resistance protein B [Yersinia frederiksenii ATCC 33641] Length = 1050 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 70/689 (10%), Positives = 179/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMLQEDIADYVGSNIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 TGVGDVQLFGSQ-YAMRIWMDPHKLNNFGLTPVDVISAIRVQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLT-------------TAEEFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFG G R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D +A + V L + + + + +G V Sbjct: 516 NRMFEKSTHHYTDSVANILRSTGRYLVIYLALVIVMGLLFIRLPSSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ L + + + F V G +K Sbjct: 576 QMPAGATQERTQNVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RPGDQNKVPAIVGRASAAFSQIKDGLVFA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + +++ + ++ K+ Sbjct: 258 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + I + + +++ + + L + + + Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 EQIQGALVGIALVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALMA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 +L G+E ++ +LT IG S + +++ + + M + +++ L Sbjct: 915 ASLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLEAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+ + G + + G++ A +I Sbjct: 973 PILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018 >gi|307627132|gb|ADN71436.1| Putative efflux pump (Putative multidrug-efflux transport protein) [Escherichia coli UM146] Length = 1022 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 Q R + + L+ + + ++ V P + Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489 Score = 43.1 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 72/243 (29%), Gaps = 9/243 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + G ++G + ++ + G S Sbjct: 786 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + S + + V +++ + + + W I + L Sbjct: 846 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + ++ A+LT IG S + +++ + + S Sbjct: 903 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A V+P+A+ G + + + G + A +IF Sbjct: 960 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019 Query: 820 LLF 822 L + Sbjct: 1020 LYW 1022 >gi|222087653|ref|YP_002546190.1| multidrug-efflux system [Agrobacterium radiobacter K84] gi|221725101|gb|ACM28257.1| multidrug-efflux system [Agrobacterium radiobacter K84] Length = 1052 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 74/527 (14%), Positives = 153/527 (29%), Gaps = 40/527 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G + + ++P P +V+ Sbjct: 10 RPVFAAVISIVILLAGAVCI-----RLLPIAQYPELTPP-------------QVVVTATY 51 Query: 63 DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + L + + + +IT++FA + A V Sbjct: 52 PGASAETVAQTVAAPLEQQINGVENMLYMQSSNSNSGAMQITVTFALGTDPDQAAINVNN 111 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q + L D + +V T + + ID + Sbjct: 112 RVQRAVTTLPQDVTRLGVVVTKRSTSILGFVAMYSTDSRYDRAFVGNYALLNVIDDLKRI 171 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + +S N+ FG + + Sbjct: 172 PGVGDVNLLGDIDYSMRIWLRPDKLAQYNLTPSDVSAAIQEQNSQFAAGRFGDQPSNTAQ 231 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y V + ++ I I + A I Sbjct: 232 PFTYTVTTQGRLADID-------------AFGDIILRSDANAATLRLKDVARIELGTKSY 278 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + + T+ L+ + Sbjct: 279 SVQSSLNGTPAIPIAVYLQPGANALNTMSALKGRLDELQKSFPQGVAYQIPYDTTKFIQV 338 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV+IV+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 339 SIEEVGRTFIEAILLVIIVVFVFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 398 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 399 FGLVLAIGIVVDDAIVVLENVERLMTTEKLSPKQAAIKAMGEVTGPVIAIVLVLCAVFIP 458 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 + F G G + FA+T+ +S+ IS A+++ A+ I++ Sbjct: 459 VSFMGGLAGQMYKQFAVTIAISVTISGIVALTLTPALCALILKPGHH 505 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 77/197 (39%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 A L+ ++K + V +T E+ R I +++ I + +++ Sbjct: 304 NTMSALKGRLDELQKSFPQGVAYQIPYDTTKFIQVSIEEVGRTFIEAILLVIIVVFVFLQ 363 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 364 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 419 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S + K++ E G + + +P++ G G + FA+ +A Sbjct: 420 -ERLMTTEKLSPKQAAIKAMGEVTGPVIAIVLVLCAVFIPVSFMGGLAGQMYKQFAVTIA 478 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 479 ISVTISGIVALTLTPAL 495 Score = 65.9 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/254 (12%), Positives = 85/254 (33%), Gaps = 12/254 (4%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + + + + L + ++ + N A + ++ + Sbjct: 788 VRSDSGKMIPLDTLIKVTRTIGPDQLERYNAFNAAKVTGNPAPGYTSGDAIKAMQQVAAE 847 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699 + E ++ + G +I I + + + +++ W L +T Sbjct: 848 TLPEGFQIAWTGSAYQELETGGA-----GTQAMIFGIIMVFLILAAQYEKWSLPLAVLTA 902 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 + + L L G+ ++ ++TLIG + + +++ + + +S + Sbjct: 903 IPFALFGALLATYLRGLTNDVYFQIGMVTLIGLAAKNAILIVEFA---VMKRKDGMSAAE 959 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816 ++ V TS+A + V+P+A+ G + + + G++ A + F Sbjct: 960 AALEAARLRFRPIVMTSLAFILGVVPLAISTGAGSASRHAIGTGVIGGMLAATFLATFFI 1019 Query: 817 APILLFIYDWRAKN 830 I + K Sbjct: 1020 PMFYRLIAWKQPKP 1033 >gi|209885374|ref|YP_002289231.1| protein-export membrane protein SecF [Oligotropha carboxidovorans OM5] gi|209873570|gb|ACI93366.1| protein-export membrane protein SecF [Oligotropha carboxidovorans OM5] Length = 340 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 115/296 (38%), Positives = 186/296 (62%), Gaps = 6/296 (2%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRS 596 FM R + IS + SI +I L FTHGLN+GIDFKGG + + P D++ +R+ Sbjct: 37 TTFHFMNFRRFSFPISAVLSIAAITLYFTHGLNFGIDFKGGTLVEIQEKSGPADIAKLRA 96 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 +L +L +GD+ Q F G N L+R+ QPG AQ ++ V+ + + E+ Sbjct: 97 DLGNLGLGDVQLQQFGGPSNVLIRIAEQPGGDAAQQEAVQKVRATL---GDGVEYRRVEV 153 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 VGP++S EL+ G +G++++ +LIY+W RF+W FALGA+ + DI T+GF ++ I Sbjct: 154 VGPRVSGELLAYGTLGLMLAICGILIYLWFRFEWQFALGAMVANVHDIVLTIGFMSITQI 213 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 +F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y + DL+++SIN TL RS+ T Sbjct: 214 DFDLTSIAALLTILGYSLNDTVVIYDRIRELLRRY-KKMPMEDLLNQSINSTLSRSIITH 272 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIYDWRAKNA 831 + +++L + ++GG I SF M FG ++V +SIFIAAP+L+++ + Sbjct: 273 VTVTLALLALFLFGGKAIHSFTATMMFGVVLVGTYTSIFIAAPMLIYLGVGTHRKG 328 >gi|104780223|ref|YP_606721.1| preprotein translocase subunit SecF [Pseudomonas entomophila L48] gi|95109210|emb|CAK13907.1| preprotein translocase membrane subunit SecF [Pseudomonas entomophila L48] Length = 296 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 158/281 (56%), Gaps = 5/281 (1%) Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 M R I++L ++ ++ + GLN+G+DF GG + + RP DL VR+ L S Sbjct: 1 MGVRNVAFAITLLLTVLALFSWWHKGLNFGLDFTGGTLIELTYERPADLEKVRTELVSSG 60 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 + Q+F + LVR+ + +TI+ E VGP++ Sbjct: 61 FHEAVVQSFGATTDLLVRMPGDDPLLGNKVAEALQ----KVGGDNPATIKRVEFVGPQVG 116 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 EL +G +G++++ +LIY+ RF+W FA+GAI +LI D+ TLG + F I F+LT Sbjct: 117 EELRDQGGLGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQITFDLTV 176 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 +AAVL +IGYS+ND +VV+DR+R+N ++ S + I+ S +TL R+V TS++ ++ Sbjct: 177 LAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ASLIENINISTTQTLLRTVATSVSTLLA 235 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + + +GG + F++ + G++ SSI+IA +L+++ Sbjct: 236 IAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 276 >gi|323979015|gb|EGB74093.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli TW10509] Length = 1034 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G+L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLVAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|78048249|ref|YP_364424.1| preprotein translocase subunit SecD [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036679|emb|CAJ24370.1| preprotein translocase subunit SecD [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 614 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 141/520 (27%), Positives = 250/520 (48%), Gaps = 39/520 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDL GG H ++VD+ + L +++++R+ L+ I Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I ++ + + + + L + + I++ Sbjct: 163 PYRSVERRADNSIQVNLGEGANADAARVTLAK------------AQPTLTYDVSGQNIAV 210 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + Q+ S AIEQ++ +R R++ +G+SE TIQR G RI+++LPG QD + ++L Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + F V+ N+ G L+ + ++G + A+ Sbjct: 271 IGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASV 330 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302 + D V + G R F T + + + Sbjct: 331 STDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 A GK + A LA +L++GSL ++ VEE +G LG++++ Sbjct: 391 EALSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A+V + ++F + Y +G + ++ N+++ +A++SL GAT+TLP AG+ L Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG Sbjct: 511 SVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G ++GFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610 Score = 151 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + G + V+ + + E + + +Q Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTT 409 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 K + ++GP + E + +G+ V+ S + L++ I Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F L+ ++ + +LFG L A + +G SV+ V++ +R+R+ Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++L + + I + G + ++ I + + +G + FA+ M GI Sbjct: 529 ELRL---GVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585 Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833 + ++I ++ + + IY R K + Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612 Score = 44.7 bits (103), Expect = 0.074, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 34/123 (27%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W L ++ + L ALPN + + Sbjct: 2 LEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQ-------------------------- 35 Query: 61 DEDDFVNGFLQMYSDELRSFLKKE----GIGVFSMRQIQNKITLSFADSRFKENIADKVT 116 D LRS + E GI ++ + + + + + + D + Sbjct: 36 ----ITASRGAQLDDALRSRIDGELKSAGITQKAITKEGDSLMVRLPSLQAQTRANDVLR 91 Query: 117 LFL 119 L Sbjct: 92 QQL 94 >gi|218555830|ref|YP_002388743.1| multidrug efflux system protein [Escherichia coli IAI1] gi|218362598|emb|CAR00223.1| multidrug efflux system protein [Escherichia coli IAI1] Length = 1034 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLVYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|325919629|ref|ZP_08181638.1| protein-export membrane protein SecD [Xanthomonas gardneri ATCC 19865] gi|325549877|gb|EGD20722.1| protein-export membrane protein SecD [Xanthomonas gardneri ATCC 19865] Length = 622 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 142/520 (27%), Positives = 251/520 (48%), Gaps = 39/520 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDL GG H ++VD+ + L +++++R+ L+ I Sbjct: 111 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDGRI 170 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I +S ++ + + + L + + I++ Sbjct: 171 AYRSVERRGDNSIQVSLSEGASADAARTALAK------------AQPTLTYDVSGQNIAV 218 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + Q+ S AIEQ++ +R R++ +G+SE TIQR G RI+++LPG QD + ++L Sbjct: 219 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 278 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + F V+ N++ G L+ + ++G + A+ Sbjct: 279 IGATASLEFRAVVEGNAEDAVRSGTIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASV 338 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302 + D V + G R T + + + Sbjct: 339 SNDQNGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 398 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 A GK + A LA +L++GSL ++ VEE +G LG++++ Sbjct: 399 EALSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 458 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A+V V ++F + Y +G + ++ N+++ +A++SL GAT+TLP AG+ L Sbjct: 459 RGVTAVVFSFVFTLVFFTIYYRMFGAITSAALLFNLLIVIAVMSLFGATMTLPGFAGLAL 518 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG Sbjct: 519 SVGLSVDANVLINERIREELRLGVPPKSAIVAGYEKAGGTILDANLTGLIVGVALYAFGT 578 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G ++GFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 579 GPLKGFALTMIIGIFASMFTAITVSRALAVLIYGSRKKLK 618 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 94/254 (37%), Gaps = 4/254 (1%) Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + V+ + + E + + +Q Sbjct: 371 LMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLEKTEAENLAKL 430 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 K + ++GP + E + +G+ V+ S + L++ I ++ F Sbjct: 431 LKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVFFTIYYRM-FGAITSAA 489 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L+ ++ + +LFG L A + +G SV+ V++ +R+R+ ++L + + Sbjct: 490 LLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRL---GVPPKS 546 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 I + G + ++ I + + +G + FA+ M GI + ++I ++ + Sbjct: 547 AIVAGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRAL 606 Query: 820 LLFIYDWRAKNARI 833 + IY R K + Sbjct: 607 AVLIYGSRKKLKSV 620 >gi|293412635|ref|ZP_06655358.1| hypothetical protein ECEG_02652 [Escherichia coli B354] gi|331664875|ref|ZP_08365780.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli TA143] gi|291469406|gb|EFF11897.1| hypothetical protein ECEG_02652 [Escherichia coli B354] gi|331058123|gb|EGI30105.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli TA143] Length = 1034 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G+L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|188991192|ref|YP_001903202.1| preprotein translocase subunit SecD [Xanthomonas campestris pv. campestris str. B100] gi|167732952|emb|CAP51148.1| Protein-export membrane protein subunit [Xanthomonas campestris pv. campestris] Length = 622 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 144/520 (27%), Positives = 252/520 (48%), Gaps = 39/520 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDL GG H ++VD+ + L+ +++++R+ L+ I Sbjct: 111 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRI 170 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I +S + + + + L + + IS+ Sbjct: 171 AYRSVERRGDNSIQVSLGEGASADAARTALAK------------SQPTLTYDVSGQTISV 218 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + Q+ S AIEQ++ +R R++ +G+SE TIQR G RI+++LPG QD + ++L Sbjct: 219 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 278 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + F V+ N++ G G L+ + ++G + A+ Sbjct: 279 IGATASLEFRAVVEGNAEDAVRSGSIPPEAKVYRVRDTGAPVLLNKRALVTGDQMVSASV 338 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302 + D V + G R T + + + Sbjct: 339 STDQNGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 398 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 A GK + A LA +L++GSL ++ VEE +G LG++++ Sbjct: 399 EALSPTRIAGVFGKNFQTTGLEKVEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 458 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A+V + ++F + Y +G + ++ N+++ +A++SL GAT+TLP AG+ L Sbjct: 459 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 518 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG Sbjct: 519 SVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 578 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G +RGFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 579 GPLRGFALTMMIGIFASMFTAITVSRALAVLIYGRRKKLK 618 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 94/254 (37%), Gaps = 4/254 (1%) Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + V+ + + E + + +Q Sbjct: 371 LMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLEKVEAENLAKL 430 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 K + ++GP + E + +G+ V+ S + L++ I ++ F Sbjct: 431 LKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRV-FGAITSVA 489 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L+ ++ + +LFG L A + +G SV+ V++ +R+R+ ++L + + Sbjct: 490 LLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRL---GVPAKS 546 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 I + G + ++ I + + +G + FA+ M GI + ++I ++ + Sbjct: 547 AIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLRGFALTMMIGIFASMFTAITVSRAL 606 Query: 820 LLFIYDWRAKNARI 833 + IY R K + Sbjct: 607 AVLIYGRRKKLKSV 620 >gi|330447977|ref|ZP_08311625.1| #NAME? [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492168|dbj|GAA06122.1| #NAME? [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 577 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 161/515 (31%), Positives = 263/515 (51%), Gaps = 34/515 (6%) Query: 27 LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83 L ++ P + I LGLDLRGG +L+VD Q SD+LR +K Sbjct: 79 LTLALEPAAPMWLQDMGFEPIKLGLDLRGGVQFLLDVDVKQVYKNHAQQLSDDLRVDFRK 138 Query: 84 EGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142 + I + +++ + I + + + Sbjct: 139 QEIRGGRAELKGNDEVIVRLPSEEANSKIRQFIREQYPQWQA-----------TNGSGDN 187 Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202 + + L + + + ++Q+++ +R RI+++GI+E+++QR G +RI I+LPG QDP+ Sbjct: 188 LVLALREKEKTDLRNLTVQQNLQTMRSRIEELGITEASVQRQGENRIRIELPGVQDPAAA 247 Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 + ++G TA ++F+ V L D +GN V K + G H+ A A+F Sbjct: 248 KNVIGATASLAFYAVKE-----EGTGSTMILPDKNGNPVRVSRKPVLGGDHIVDARASFG 302 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQ 310 P V+I+ D G + + +R N+GKP+A A Q Sbjct: 303 ENGT-PEVNITLDSAGGKMMSDFSRMNVGKPMATSYSEYSRNAKGETVQTNKIISVATIQ 361 Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370 + +I+G ++E A LA +LRAGSL + IVEER +G LG+++I G A+ Sbjct: 362 TQLGSRFRITGAGSLEDAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALAL 421 Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVD 429 G+ + +LFM V Y + G VA+ ++ N+I+ LL+L+ A LTLP IAG+VL +G+AVD Sbjct: 422 GMGVTLLFMAVWYRRLGWVANVALICNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVD 481 Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 +N+L+ ERIR+ R+ +S ++D GFS A+ TIFD+N T +I VVL+ G G ++GFA Sbjct: 482 TNVLIFERIRDMIREGRSFAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFA 541 Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +T+GL +L SMFT I RA++ + + + Sbjct: 542 LTLGLGLLTSMFTGIFASRAIINLVWGRDSRRDVR 576 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G ++ V S N + + + + L G + Sbjct: 318 GKMMSDFSRMNVGKPMATSYSEYSRNAKGETVQTNKIISVATIQTQLGSRFRITGAGSLE 377 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I+ G + + L+++ + ++ Sbjct: 378 DAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALALGMGVTLLFMAVWYR-R 436 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R+R ++ Sbjct: 437 LGWVANVALICNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDMIRE 496 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID+ + G + I+ + + G I FA+ + G++ + Sbjct: 497 ---GRSFAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 553 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + I+ ++ ++ Sbjct: 554 TGIFASRAIINLVWGRDSRR 573 >gi|238751036|ref|ZP_04612532.1| Acriflavine resistance protein B [Yersinia rohdei ATCC 43380] gi|238710726|gb|EEQ02948.1| Acriflavine resistance protein B [Yersinia rohdei ATCC 43380] Length = 1050 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIILMLAGALAIM-----KLPIAQYPTIAPPA-------------ISISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMLQEDIADYVGSNVKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNFGLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQIMLKVNTDGSQVRLKDVAIVQLGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV IV+++ + + L+ ++ + ++ T A+LS LG ++ ++ Sbjct: 336 SINEVVKTLIEAIILVFIVMYLFLQNFRATLIPTIAVPVVLLGTFAILSALGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSVTIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D + + V + + L + +G V Sbjct: 516 NRMFEKSTDHYTDSVGNILRSTGRYLVIYLAIVIGMGVLFLRLPTSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L + + + F V G +K Sbjct: 576 QLPAGATQERTQKVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RPGDQNKVPAIVGRASAAFSKIKDGLVYA 664 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + +++ + ++ K+ Sbjct: 258 SQVRLKDVAIVQLGAENYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + I + I +++ + + L + + + Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLIEAIILVFIVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + G N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSALGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GGS F++ + +V++ ++ + + Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSVTIVSAMVLSVLVALILTPAL 492 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 E + + L + + G L + IS I + + + ++ W Sbjct: 838 EAMDMMQELVSKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L +L G+ ++ +LT IG S + +++ + + M Sbjct: 898 FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + +++ L + TS+A + VLP+ V G + + G+V A Sbjct: 958 G--LVESTLEAVRMRLRPILMTSLAFILGVLPLVVSSGAGSGAQNAVGTGVMGGMVTATV 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|21243570|ref|NP_643152.1| multidrug efflux transporter [Xanthomonas axonopodis pv. citri str. 306] gi|21109138|gb|AAM37688.1| multidrug efflux transporter [Xanthomonas axonopodis pv. citri str. 306] Length = 1047 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 68/689 (9%), Positives = 175/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L + ++P+ P + + + Sbjct: 8 RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPAIAPPA-------------VAITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + +K + S ITL+F + + +V Sbjct: 50 PGASAQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ + T + + + + S + + I Sbjct: 110 KLSLATPLLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L T + N G + Sbjct: 170 EGVGDTTLFGSQ-YAMRVWMDPNKLSNFSLTPVDVRNAIQAQNAQISAGQLGALPALANQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + + I Sbjct: 229 QLNATITAQTRL-------------KTAEQFENILLRTQSDGSQVRLRDVARIELGSESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T+ P Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +L+ G T+ ++ Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMGEEQLSPKDATRKSMDQISGALIGVALVLAAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------I 523 + FF G R F+IT+ ++ +S+ A+ + A+ +++ Sbjct: 456 MAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVHKGHGLATTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + + + + L ++ + + +G + + V Sbjct: 516 NRLFDRGNTGYQGVVRHMLGKGWRYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ ++ + Q F V G ++ Sbjct: 576 QLPPGATNARTSDVLKQVEHHFLVDQKESVAGVFAVTGFSFAGSGQNVGFAFVKLRPWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 ++ + + + Sbjct: 636 RTGKGQSVTDVAAKAGAFFSGIRDAKVFA 664 Score = 77.4 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 89/243 (36%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + L +++ R ++ ++ + Sbjct: 258 SQVRLRDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P R I + + ++ + + + + +++ + + L + + + Sbjct: 318 PPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + A++ IG V+D +VV + + + +S +D KS+ Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMGEEQLSPKDATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 ++ G + ++ +PMA + GS F+I + + ++ ++ + + Sbjct: 436 DQISGALIGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 78/266 (29%), Gaps = 10/266 (3%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + A V + + + N L Sbjct: 776 PYRMNPQDIDHWFVRNSAGTMVPFNAFATASWQSGSPRLERYNSVPSMEILGMALPGAAS 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 S +++E K+ + + + + G++ + I L + Sbjct: 836 SGEAMQIVEAAAAKLPPGIGF----EWTGLSRQEKASSGQTGLLYSVSILIVFLCLAALY 891 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W I + L + TL L ++ +LT IG + + +++ + R+ Sbjct: 892 ESWAIPFSVILVVPLGVFGTLLAAMLTWKMNDVYFQVGLLTTIGLASKNAILIVEFARE- 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804 L+ S ++ L + TS+A + V+P+ + G + + G Sbjct: 951 --LHEGGKSLVAAALEAARMRLRPILMTSLAFILGVVPLVLTSGAGAGAQHALGTAVIGG 1008 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 +V +IF + + + Sbjct: 1009 MVSGTVLAIFFVPLFFVLVCGLFQRR 1034 >gi|331669204|ref|ZP_08370052.1| multidrug efflux protein [Escherichia coli TA271] gi|331064398|gb|EGI36309.1| multidrug efflux protein [Escherichia coli TA271] Length = 629 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 71/627 (11%), Positives = 163/627 (25%), Gaps = 51/627 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P P ++ + + Sbjct: 8 RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S Q +TLSF + +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL + + + +I+ + + + D + Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 DP++L T ++ N G D Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E L V Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ W V +L L ++ +G V Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQN 610 +E ++ + + Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEK 602 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + L + +A ++ ++ + P Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + + + +++ + + L + + + T Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 FG N + A++ IG V+D +VV + + + ++ R+ KS+ + Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GG+ F+I + +V++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497 Query: 825 DWRAK 829 K Sbjct: 498 KPLKK 502 >gi|158522454|ref|YP_001530324.1| preprotein translocase subunit SecF [Desulfococcus oleovorans Hxd3] gi|158511280|gb|ABW68247.1| protein-export membrane protein SecF [Desulfococcus oleovorans Hxd3] Length = 347 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 104/348 (29%), Positives = 161/348 (46%), Gaps = 52/348 (14%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRP 588 F +I D I F+ + + S + +I L HG YGIDF GG + V P Sbjct: 1 MFEIIKDGTTIDFVGKQKYAFVFSAAMILITIISLVAHGGPRYGIDFAGGTLVQVKFASP 60 Query: 589 VDLSVVRSNLESLQIGDISFQNFD----GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 V + + S+L+++ I + Q + G+ +LV ++ Sbjct: 61 VSTNTIASSLKTVGIDVSTVQAYGHPKEGDCQYLVNSAMDMTGISGDDFEDKVKTALAGA 120 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--------------- 689 + I E+VGP + + L K ++ + S + + IYI RF+ Sbjct: 121 TGQTAEITRVEMVGPTVGKSLRGKALMALFFSLLFINIYISGRFEMKWVVAGVVAGGLIL 180 Query: 690 -------------------------------WYFALGAITTLILDITKTLGFFALFGIEF 718 +A+GAI LI D+T T+G F++ G EF Sbjct: 181 AVWLFSMLGISIPYLILVALVVSLVLFWVLELKYAMGAIVALIHDVTITVGIFSITGKEF 240 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 +L +AA+LT+IGYS+ND ++V+DR+R+N+K + S D+I+ SINETL R++ TS Sbjct: 241 SLPIIAALLTIIGYSLNDTIIVFDRIRENLKKLSRK-SLPDIINTSINETLSRTLLTSGT 299 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 I V + V+GG++I FA M GI V SSIF+A+PILL Sbjct: 300 TLIVVAALFVFGGTIIHDFAFAMLVGIGVGTYSSIFVASPILLLWKKK 347 >gi|53805141|ref|YP_113195.1| preprotein translocase subunit SecF [Methylococcus capsulatus str. Bath] gi|53758902|gb|AAU93193.1| protein-export membrane protein SecF [Methylococcus capsulatus str. Bath] Length = 309 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 4/297 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS++ I +I L GLN GIDF GGI + V +P D Sbjct: 1 MEFFKIKRDIPFMRYGRLTTTISLVTFILAILALGFKGLNLGIDFTGGILMEVRYAQPAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L +R LE +I + + QNF ++ L+RL + Q+ + + + + Sbjct: 61 LEAIRKTLEEQRIAEAAVQNFGTSRDVLIRLPLREDTGARQS---DQIFSALKAQDGTAE 117 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +E+ G + +++ A ++ Y+ +RF W FA+ A+ + DI LG Sbjct: 118 LKRVEFVGPQVGKEMYESGGLALMLVAAGIMAYLAMRFAWRFAVAAMIANMHDIVIILGM 177 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF L+ +A VL ++GYSVN+ VVV+DR+R+N + + D+ID +I T+ Sbjct: 178 FAFFEWEFTLSVLAGVLAILGYSVNESVVVFDRVRENFRKMRK-AAVTDVIDNAITATMS 236 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 R++ T + VL M +GG + +FA+ + GIV SS+ +A P++L + R Sbjct: 237 RTIITHSMTQLMVLAMFFFGGDALHNFALALTIGIVFGIYSSVLVACPVVLALGVSR 293 >gi|118475690|ref|YP_891903.1| preprotein translocase subunit SecD [Campylobacter fetus subsp. fetus 82-40] gi|118414916|gb|ABK83336.1| protein-export membrane protein SecD [Campylobacter fetus subsp. fetus 82-40] Length = 529 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 176/541 (32%), Positives = 297/541 (54%), Gaps = 35/541 (6%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65 + ++++ + GL ++P+FL +ISLGLDL+GG H++L V D+ Sbjct: 8 YRLVIFILALIFGLGFSMPSFLQSEKG---------YKISLGLDLQGGLHMLLGVQTDEA 58 Query: 66 VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125 + ++ + +R F K I V +++ + + L+ DS + I + + Sbjct: 59 ITSKIKSIASSIRYFTNKNDILVENLKTDTDTVHLTILDSDEAKKIDEMLK--------- 109 Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185 K L + I L+ +A++Q++E IR R+DQ G++E T+ + G Sbjct: 110 ----GIKGLDIKKDGLNYRISLTAAEKIDTAKYAVDQAVETIRNRLDQFGLAEPTVAKQG 165 Query: 186 SHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLP--------NNSKKGFMFGVRFLR 234 ++IL++LPG + D R + L+ +A + + + +G Sbjct: 166 ENQILVELPGIKTAADEQRAKDLIAKSAHLQLMALDEKRQDQANKMTEAEATAYGDVLYP 225 Query: 235 D--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292 D + +YL++D + G L A FD +T+ P++ + + GAR F + T N+GK Sbjct: 226 DVKNPKFKYLIKDIPVLDGNMLVDARVAFDNQTNSPIISFTLNAEGARIFGDFTGSNVGK 285 Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352 LA+VLDG+V +APVIN+ I G QISG F++E A +A LR+G+L +N++E+R++ Sbjct: 286 RLAIVLDGKVYSAPVINERIGGGSGQISGGFSVEEAHDVAIALRSGALLAPVNMLEKRSI 345 Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412 G LG SI + A+ G +L+VLFM+++YG G++A+ ++ +N++L +A+++L GATL Sbjct: 346 GPSLGQQSIDQSMVALAGGAILVVLFMVLIYGLAGVLANIALVVNILLLVAVMALFGATL 405 Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472 TLP +AGI+L IG+AVD+N+++NERIRE + QSV S++ G+ A S I DSN+T LI Sbjct: 406 TLPGMAGILLTIGMAVDANVIINERIRELLKAGQSVHVSIEKGYKNAMSAIIDSNLTTLI 465 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 + L+ +G G V+GFA+TM + IL SM TAI M F+ + + + Sbjct: 466 TSAALYAYGTGPVKGFAVTMSIGILASMLTAILGTHGMFEFLGKKIENNKNSVLWFGYKI 525 Query: 533 L 533 Sbjct: 526 R 526 Score = 134 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 84/182 (46%), Gaps = 4/182 (2%) Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709 + +GP + ++ I + +V + AI +++++ + + + A L+++I + Sbjct: 338 NMLEKRSIGPSLGQQSIDQSMVALAGGAILVVLFMVLIYGL-AGVLANIALVVNILLLVA 396 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 ALFG L +A +L IG +V+ V++ +R+R+ +K S I+K + Sbjct: 397 VMALFGATLTLPGMAGILLTIGMAVDANVIINERIRELLKA---GQSVHVSIEKGYKNAM 453 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + +++ I+ + +G + FA+ M+ GI+ + ++I + F+ Sbjct: 454 SAIIDSNLTTLITSAALYAYGTGPVKGFAVTMSIGILASMLTAILGTHGMFEFLGKKIEN 513 Query: 830 NA 831 N Sbjct: 514 NK 515 >gi|157373294|ref|YP_001471894.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella sediminis HAW-EB3] gi|157315668|gb|ABV34766.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Shewanella sediminis HAW-EB3] Length = 1050 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 74/687 (10%), Positives = 180/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L L + ++PS P + V Sbjct: 8 RPIFAWVIAIIVMLAGVLSIL-----GLPVSQYPSIAPPSV---------EIRAVYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + + ITL+F + +V LQ Sbjct: 54 AKTMEDSVTQVIEQRMTGIDHLRYISSTSDSFGNATITLTFNAEADPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + + +++ + + + D + Sbjct: 114 AMPLLPQEVQAQGVNVAKSSAGFLMVVGFVSQDGSLDKNDIADYVGSNVQDPMSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L Q T+ + N G Sbjct: 174 TIQLFGAQ-YAMRIWLDPLKLTQYNLTSQDIIASIREQNAQVSAGQLGGAPSVSGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + I + + F + Sbjct: 233 TVSAQSRL-------------QTAEQFKKIIIKADSTGAKVFLEDVARVELGAENYDVES 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T E A L+ + S Sbjct: 280 YYNGKPAAGIGIQLATGANALATAEGVRAKIAELQPFFPQGLEVVYPYDTTPFVEKSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +++++ + + L+ ++ + ++ T A+LS G ++ ++ +V Sbjct: 340 VVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILSAAGFSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + S + + + +T V + F Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPIEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 G R F+IT+ ++ +S+ AI + A+ + + + Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVMVAIILTPALCATMLKPIAKGHHAVDTGFFGWFNRKF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + +A RA + + + + +G + + Sbjct: 520 DALTSRYEASVAAMIKRAGRTMMVYLAITVAVGWIFMRMPTAFLPDEDQGILFTQAILPV 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L + + + + + F V G+ +K P Sbjct: 580 NSTQEETKKVLSDVSDFYLEQEGDNVKSVFSVSGFSFAGNGQNMGIAFVGLKDWSERTDP 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +Q+ + ++ + + Sbjct: 640 GQDVQSVAGRAMGMFMQMKEAFVFAFV 666 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 80/240 (33%), Gaps = 6/240 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 V L V + D+ + +++A + ++ Sbjct: 255 STGAKVFLEDVARVELGAENYDVESYYNGKPAAGIGIQLATGANALATAEGVRAKIAELQ 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + ++ + + + + +++ + + L + + Sbjct: 315 PFFPQGLEVVYPYDTTPFVEKSIEGVVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T + G N + A++ IG V+D +VV + + + +S + Sbjct: 375 VLLGTFAILSAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPIEATK 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+++ G V + +PMA GS F+I + + ++ +I + + Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVMVAIILTPAL 492 Score = 63.9 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 75/246 (30%), Gaps = 13/246 (5%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + V S + + N N + Sbjct: 777 YRMQPEDIDSWYVRNTKGDMVPFSAFATGSWEYGSPRLERFNGLPAMNIQGGVAPGFSTG 836 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + +MVK+ + E ++ +S + + + + + Sbjct: 837 EAMNIIEDMVKQLPPGFGVEWNGLSYEERLSGNQAPMLY------ALSIVVVFLVLAALY 890 Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + W I + L I L G+ ++ +LT +G + + +++ + ++ Sbjct: 891 ESWSVPFSVILVVPLGIIGALIAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEY 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 Y + ++ L + TS+A + V+P+A+ G + + G Sbjct: 951 ---YEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGG 1007 Query: 805 IVVAAS 810 ++ + Sbjct: 1008 MMSSTF 1013 >gi|294664103|ref|ZP_06729498.1| protein export protein SecD [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606124|gb|EFF49380.1| protein export protein SecD [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 614 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 142/520 (27%), Positives = 250/520 (48%), Gaps = 39/520 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDL GG H ++VD+ + L +++++R+ L+ I Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I +S + + + + L + + I++ Sbjct: 163 PYRSVERRADNSIQVSLGEGANADAARVALAK------------AQPTLTYDVSGQNIAV 210 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + Q+ S AIEQ++ +R R++ +G+SE TIQR G RI+++LPG QD + ++L Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + F V+ N+ G L+ + ++G + A+ Sbjct: 271 IGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASV 330 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302 + D V + G R F T + + + Sbjct: 331 STDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 A GK + A LA +L++GSL ++ VEE +G LG++++ Sbjct: 391 EALSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A+V + ++F + Y +G + ++ N+++ +A++SL GAT+TLP AG+ L Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG Sbjct: 511 SVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G ++GFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610 Score = 151 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + G + V+ + + E + + +Q Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTT 409 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 K + ++GP + E + +G+ V+ S + L++ I Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ F L+ ++ + +LFG L A + +G SV+ V++ +R+R+ Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++L + + I + G + ++ I + + +G + FA+ M GI Sbjct: 529 ELRL---GVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585 Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833 + ++I ++ + + IY R K + Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612 Score = 43.5 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 34/123 (27%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W L ++ + L ALPN + + Sbjct: 2 LEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQ-------------------------- 35 Query: 61 DEDDFVNGFLQMYSDELRSFLKKE----GIGVFSMRQIQNKITLSFADSRFKENIADKVT 116 D LRS + E GI ++ + + + + + + D + Sbjct: 36 ----ITASRGAQLDDALRSRIDGELKSAGITPKAITKEGDSLMVRLPSLQAQTRANDVLR 91 Query: 117 LFL 119 L Sbjct: 92 QQL 94 >gi|292898735|ref|YP_003538104.1| multidrug efflux pump [Erwinia amylovora ATCC 49946] gi|291198583|emb|CBJ45691.1| multidrug efflux pump [Erwinia amylovora ATCC 49946] Length = 1048 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 68/684 (9%), Positives = 176/684 (25%), Gaps = 43/684 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L L + ++++P+ P + Sbjct: 8 RPIFAWVIAIIVMLAGTLSIL-----KLPIEQYPNVAPPAI---------EITATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + S ++TL+F + +V LQ Sbjct: 54 AKTLQDSVTQVIEQNMNGIDGLMYMGSSSDSSGTLQLTLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ D + S + D + Sbjct: 114 ATPLLPQEVQQQGISVQKSSSSFLMVAGFINDSGTMTQNDISDYVGSNIKDPLSRVSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L T + N G Sbjct: 174 DTQLFGAQ-YAMRIWMDPHKLNNYQLTPVDVISAINTQNAQVAAGQLGGSPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + R +I Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNADGSRVRLSDVAHIELGGENYEVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T L + S + Sbjct: 280 RYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFFPSGLKVVYPYDTTPFVKISINE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A++S G ++ ++ G+V Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKSMDQIQGALVGIALVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVIVALILTPALCATMLKPINKGDHGKTTGFFGWFNRLF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + V ++ + L + +G Sbjct: 520 DKSTHHYTDSVGHIVRSTGRYLVIYLLIVVGMAFLFLRLPTSFLPEEDQGVFLTMAQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + ++ + + F V G +K Sbjct: 580 GATQERTQKVLDQVTDYYLNKEKTNVNSVFTVNGFGFAGRGQNTGLAFVSLKPWDERSGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671 + + + ++ Sbjct: 640 ENKVPAITGRAMGALSAIKDAMVI 663 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 89/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V LS V + ++ + + L +++ ++ K+ Sbjct: 258 SRVRLSDVAHIELGGENYEVIARYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + + + + +++ + + L + + + Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G V ++ +PMA +GGS F+I + +V++ ++ + + Sbjct: 436 DQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALILTPAL 492 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 7/193 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G A E + L T + G L + IS I + + + Sbjct: 828 GQPAAGKSSGEAMNLMQELASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L F L G+ ++ V +LT IG S + +++ + Sbjct: 888 AALYESWSIPFAVMLVVPLGVIGALIFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEF 947 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + M+ + +++ L + TS+A + VLP+A+ G + Sbjct: 948 AKDLMEKEGKG--LVEATLEAVRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTG 1005 Query: 801 MAFGIVVAASSSI 813 + G+V A +I Sbjct: 1006 VMGGMVTATVLAI 1018 >gi|15801884|ref|NP_287904.1| putative efflux pump [Escherichia coli O157:H7 EDL933] gi|15831118|ref|NP_309891.1| multidrug-efflux transport protein [Escherichia coli O157:H7 str. Sakai] gi|217329188|ref|ZP_03445268.1| multidrug efflux transport protein EefB [Escherichia coli O157:H7 str. TW14588] gi|12515493|gb|AAG56520.1|AE005377_13 putative efflux pump [Escherichia coli O157:H7 str. EDL933] gi|13361329|dbj|BAB35287.1| putative multidrug-efflux transport protein [Escherichia coli O157:H7 str. Sakai] gi|217317627|gb|EEC26055.1| multidrug efflux transport protein EefB [Escherichia coli O157:H7 str. TW14588] gi|320189954|gb|EFW64606.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli O157:H7 str. EC1212] gi|326343285|gb|EGD67052.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli O157:H7 str. 1044] Length = 1027 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 77/683 (11%), Positives = 187/683 (27%), Gaps = 41/683 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P I Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQ--VQNKIQ 111 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 112 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 171 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 172 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 230 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + + Sbjct: 231 ATVRAQSRL-------------QTVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAI 277 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 278 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 337 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 338 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 397 Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + K + + + + + + F Sbjct: 398 VLAIGLLVDDAIVVVENVERIMRDKGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 457 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F+IT+ ++L+S+ A+++ A+ ++++ F Sbjct: 458 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFDRFYRRT 517 Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592 Q R + + + L L ++ V P + Sbjct: 518 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 577 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 578 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 637 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 638 AQAIALRATKELGTIRDATVFAM 660 Score = 80.9 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + +++ +++ + +P Sbjct: 259 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 318 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 319 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 378 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 379 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDKGLPAREATEKSMGE 436 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F+I I+ A S+ +A + Sbjct: 437 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 487 >gi|238783874|ref|ZP_04627892.1| Acriflavine resistance protein B [Yersinia bercovieri ATCC 43970] gi|238715261|gb|EEQ07255.1| Acriflavine resistance protein B [Yersinia bercovieri ATCC 43970] Length = 1039 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 69/556 (12%), Positives = 153/556 (27%), Gaps = 46/556 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++C G L ++++P+ P + + Sbjct: 8 RPIFAWVLAIIMCLTGALAI-----STLPIEQYPNLAPPT-------------VRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S ITL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ KL D ++ + + + ++++ + + + D + Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP++L TT + N+ G D+ Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + I Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T A L + Sbjct: 276 DYLSRFNGQAASGMSVKLASGANELQTDALVKARLAELAPFFPHGLEAKIAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSVFGFSINTLTL 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IVL IGL VD I+V E + + + + + + + + Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A+ + A+ +K I Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIKPGHHHGKRG 510 Query: 534 IPDCIAIQFMRARFWG 549 F R Sbjct: 511 FFGWFNRMFDRNAHRY 526 Score = 87.4 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 53/482 (10%), Positives = 141/482 (29%), Gaps = 25/482 (5%) Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 + G + I I Y + L + S+ G+ Sbjct: 13 WVLAIIMCLTGALAISTLPIEQYPNLAPPTVRISASYPGASAQTLENTVTQVIEQSMTGL 72 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 + ++ S+ + I + + ++ ++ S I V + Sbjct: 73 DNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQNQLQSAIKKLPQDVQQQGVSVSKS 132 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 G + A + A + + + R + + SID I Sbjct: 133 GDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRIEGVGSIDAFGSQYAMRIWLDPNK 192 Query: 541 ----------------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 G + + + ++ + Sbjct: 193 LNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQALNATINAQSQLQTPEQFREITLR 252 Query: 585 ANRP---VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 N+ V L V + D + + + + + +++ + Sbjct: 253 VNQDGSLVTLGDVAKIEMGAEKYDYLSRFNGQAASGMSVKLASGANELQTDALVKARLAE 312 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700 + P + I+ + ++ + + + + +++ + + L + Sbjct: 313 LAPFFPHGLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAV 372 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + + T ++FG N + A++ IG V+D +VV + + + + R+ Sbjct: 373 PVVLLGTFAILSVFGFSINTLTLFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREA 430 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817 KS+ + G V ++ +PMA +GG+ F+I + +V++ ++ + Sbjct: 431 TRKSMGQIQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTP 490 Query: 818 PI 819 + Sbjct: 491 AL 492 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + IS + + + + ++ W + + L + + Sbjct: 853 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+E ++ +LT+IG S + +++ + + L + ++ + L Sbjct: 913 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRQRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A VLPMAV G + + G++ A +IF + + Sbjct: 970 RPILMTSLAFIFGVLPMAVSQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029 >gi|153837116|ref|ZP_01989783.1| protein-export membrane protein SecD [Vibrio parahaemolyticus AQ3810] gi|149749533|gb|EDM60279.1| protein-export membrane protein SecD [Vibrio parahaemolyticus AQ3810] Length = 612 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 156/513 (30%), Positives = 272/513 (53%), Gaps = 27/513 (5%) Query: 25 NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84 F S+ + + M + I LGLDLRGG +L VD + DE+++ L+ + Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALIDEIKANLRDQ 172 Query: 85 GIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143 + +R + N+IT+ + E +V FL+ + ++ + Sbjct: 173 RVRGVQVRAESGNRITV----NSDSEQALSEVNKFLRQ--------NYPGWISKSSSRGF 220 Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203 + S+ NI + S ++Q+++I+R RI+++GI+E+ +QR G I I+LPG QDP++ + Sbjct: 221 VLEPSEQNIQEFQSSTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 280 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 ++G TA ++F++V + + L+D+DG ++ + ++G H+ A A D Sbjct: 281 NVIGATASLAFYEVKD--ASQAHSSQDLVLQDNDGRTVILAKRPVLTGEHIVNARAGVDK 338 Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312 V G + V R+ V + + Q+ Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERVISVATIQSQ 398 Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372 + +I+G +++ A LA +LRAGSL + IVEER +GA LG+++I G A+ G+ Sbjct: 399 LGSQFRITGAGSMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGM 458 Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431 L + FM + Y + G VA+ ++ N++ L L++LL A LTLP IAG+VL +G+AVD+N Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +++ ERI+++ R+ +S ++D+GF A+STI D+NIT +I V+L+ G G ++GFA+T Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALT 578 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +GL +L SMFT + RAM+ I + + Sbjct: 579 LGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 611 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + TI +G + E I G + + L ++ + + Sbjct: 410 SMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 469 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L ++ LG AL G L +A ++ +G +V+ V++++R++ Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 M+ SF ID + + ++ I+ + + G I FA+ + G++ Sbjct: 529 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 585 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + + +F + ++ I+ A+ Sbjct: 586 SMFTGVFASRAMINLIWGRDARR 608 >gi|91223994|ref|ZP_01259257.1| protein export protein SecD [Vibrio alginolyticus 12G01] gi|91190905|gb|EAS77171.1| protein export protein SecD [Vibrio alginolyticus 12G01] gi|328470964|gb|EGF41875.1| preprotein translocase subunit SecD [Vibrio parahaemolyticus 10329] Length = 612 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 156/513 (30%), Positives = 272/513 (53%), Gaps = 27/513 (5%) Query: 25 NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84 F S+ + + M + I LGLDLRGG +L VD + DE+++ L+ + Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALIDEIKANLRDQ 172 Query: 85 GIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143 + +R + N+IT+ + E +V FL+ + ++ + Sbjct: 173 RVRGVQVRAESGNRITV----NSDSEQALSEVNKFLRQ--------NYPGWISKSSSRGF 220 Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203 + S+ NI + S ++Q+++I+R RI+++GI+E+ +QR G I I+LPG QDP++ + Sbjct: 221 VLEPSEQNIQEFQSSTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 280 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 ++G TA ++F++V + + L+D+DG ++ + ++G H+ A A D Sbjct: 281 NVIGATASLAFYEVKD--ASQAHSSQDLVLQDNDGRTVILAKRPVLTGEHIVNARAGVDK 338 Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312 V G + V R+ V + + Q+ Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERVISVATIQSQ 398 Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372 + +I+G +++ A LA +LRAGSL + IVEER +GA LG+++I G A+ G+ Sbjct: 399 LGSQFRITGAGSMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGM 458 Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431 L + FM + Y + G VA+ ++ N++ L L++LL A LTLP IAG+VL +G+AVD+N Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +++ ERI+++ R+ +S ++D+GF A+STI D+NIT +I V+L+ G G ++GFA+T Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALT 578 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +GL +L SMFT + RAM+ I + + Sbjct: 579 LGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 611 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + TI +G + E I G + + L ++ + + Sbjct: 410 SMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 469 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L ++ LG AL G L +A ++ +G +V+ V++++R++ Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 M+ SF ID + + ++ I+ + + G I FA+ + G++ Sbjct: 529 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 585 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + + +F + ++ I+ A+ Sbjct: 586 SMFTGVFASRAMINLIWGRDARR 608 >gi|330447242|ref|ZP_08310892.1| acrB RND-type permease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491433|dbj|GAA05389.1| acrB RND-type permease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1046 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 71/692 (10%), Positives = 185/692 (26%), Gaps = 52/692 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + + ++PS P +V+ + Sbjct: 8 RPIFAWVIAIIVMLAGVLSII-----KLPVSQYPSIAPPT-------------VVISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S +ITL+F + +V Sbjct: 50 PGANAKTMEDTVTQVIEQRMTGIDHLRYLSSTSDSFGNTQITLTFNAEADPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L ++ ++ + +++ + + S I D + Sbjct: 110 KLQAALPLLPMEVQQQGVKVNKASSSFLMVVGFYSEDGSMDKNDISDYISSNVADPMSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L + T+ + N G Sbjct: 170 AGVGEITTFGAQ-YAMRIWLDPLKLTKYNLTSIDVIAAIKEQNAQISAGQLGASPSMPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + I + + Sbjct: 229 ELNATVSAQSRL-------------QTPEEFKNIIVKSDSAGATVRLGDVARVELGAEDY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T E L+ + Sbjct: 276 SVQVFYNGKPASGLGIKLATGANALATAEAVKAKVEELKPFFPEGLTAVYPYDTTPFVEK 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV I++++ + + L+ ++ + ++ T A+LS+ G ++ ++ Sbjct: 336 SIEGVVHTLFEAVALVFIIMYLFLQNFRATLIPTIAVPVVLLGTFAVLSMAGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + + +T V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEEGLNAVEATRKSMDQITGALVGIALTLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526 + F G R F+IT+ ++ +S+ A+ + A+ + + + Sbjct: 456 MAFMSGSTGVIYRQFSITIVTAMSLSVLVAVILTPALCATMLKPVEHGEKKGFFGWFNRT 515 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 +A R+ + L + +G + + Sbjct: 516 FDKLTSRYEASVAAMIKRSIRVMLIFLGLTVAVGWMFNKMPTSFLPDEDQGILFSQAILP 575 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + ++ + ++ + F V G +K + Sbjct: 576 VNSTQEQTQEVMDKVSDFYLNDEKDTVASVFSVSGFSFAGSGQNMGMAFISLKDWSDRQL 635 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 P +++ +++ ++ S Sbjct: 636 PGMDVKSVVARSMAYFQQIKN----AMVFSFA 663 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 32/268 (11%), Positives = 81/268 (30%), Gaps = 13/268 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + V S + + N N + Sbjct: 774 YRMKPTDLDTWYVRNNQGEMVPFSAFATGEWKYASPRLERFNATPAVNIQGGVVPGYSTG 833 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + EMVK+ + E ++ +S + + + + + Sbjct: 834 QAMLDIEEMVKQLPPGFGIEWNGLSYEERLSGNQAPMLY------ALSILVVFLVLAALY 887 Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + W I + L I L G+ ++ +LT +G + + +++ + ++ Sbjct: 888 ESWSVPFAVILVVPLGIIGALLAMNGRGMPNDVFFQVGLLTTVGLATKNAILIVEFAKEY 947 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 Y + ++ L + TS+A + V+P+A+ G + + G Sbjct: 948 ---YEKGAGLVEATLHAVRVRLRPIIMTSLAFGLGVVPLAISTGVGSGGKNAIGTAVLGG 1004 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832 ++ + IF + + ++ + Sbjct: 1005 MLSSTFLGIFFIPIFFVVVERIFSRKKK 1032 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 84/240 (35%), Gaps = 6/240 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A V L V + + + L +++A ++ +++ Sbjct: 255 SAGATVRLGDVARVELGAEDYSVQVFYNGKPASGLGIKLATGANALATAEAVKAKVEELK 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + + + + I +++ + + L + + Sbjct: 315 PFFPEGLTAVYPYDTTPFVEKSIEGVVHTLFEAVALVFIIMYLFLQNFRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T ++ G N + A++ IG V+D +VV + + ++ ++ + Sbjct: 375 VLLGTFAVLSMAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEEGLNAVEATR 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+++ G V ++ +PMA GS F+I + + ++ ++ + + Sbjct: 433 KSMDQITGALVGIALTLSAVFVPMAFMSGSTGVIYRQFSITIVTAMSLSVLVAVILTPAL 492 >gi|254410515|ref|ZP_05024294.1| RND transporter, HAE1 family [Microcoleus chthonoplastes PCC 7420] gi|196182721|gb|EDX77706.1| RND transporter, HAE1 family [Microcoleus chthonoplastes PCC 7420] Length = 1059 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 78/572 (13%), Positives = 164/572 (28%), Gaps = 40/572 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + + +I IG + P + ++P PK + ++ + Sbjct: 8 KRPVFTTVCSLIILLIGAISI-----PTLPVAQYPDISPK-------------QVSVQAN 49 Query: 62 EDDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116 + ++ L + G+ + + I ++FA + ++ A V Sbjct: 50 YNGADAQTVENAVTTILERAINGVDGMRYMTSSSSNDGTSSINITFAPDKDQDIAAVDVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + +L + + E ++ + + S +D + Sbjct: 110 NRVSLAEPQLPESVLQTGVTVNKESANFLMAFGLYSENGEYDNLFLSNYANLYLVDALKR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + DP RL T + N G + Sbjct: 170 VNGVGNVQIFGERTYAMRLWLDPLRLASRNLTAQDVVDALREQNIQVGAGRIGQPPAPEG 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q + + I + + Sbjct: 230 QQYQIDLRAISRL-------------ETVSDFEELILATDEDGTLIKLNDVGRVELGAQN 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 A + + + A L A P + Sbjct: 277 YGTFLRFRANEAVGLGINTVPGSNALEVADAVKAEMAKLAADFPPGMTYDIGFDTTDYVN 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S S T GLV++V+F+ + + ++ +I +++I T A + + ++ + Sbjct: 337 QSLSEVVFTLLKAVGLVVLVIFVFLQDWRTTIIPAITIPVSLIGTFAFVKIFDFSINSLT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIAT 474 + G+ L G+ VD I+V E I + ++ +S ++ + I S + + Sbjct: 397 LFGLTLATGMVVDDAIVVVEDITTKIQRGGIKSRQAAIISMRELVGAVIATSLVLMAVFI 456 Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 V FF G R FA+T+ SI +S F A+++ + I+R K + L F Sbjct: 457 PVAFFPGTTGALYRQFALTIAFSIAVSTFMALTLTPTLSGLILRQKPEATGLWGHLFDGF 516 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLL 564 Q R + I + L Sbjct: 517 NRFLEGMQQRYRRFLIILTRVKTLVIVAFIGL 548 Score = 81.3 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 5/228 (2%) Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R L + G + + V + K + P T Sbjct: 269 RVELGAQNYGTFLRFRANEAVGLGINTVPGSNALEVADAVKAEMAKLAADFPPGMTYDIG 328 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 +++ L + + +L+ W + T+ + + T F +F Sbjct: 329 FDTTDYVNQSLSEVVFTLLKAVGLVVLVIFVFLQDWRTTIIPAITIPVSLIGTFAFVKIF 388 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 N + + G V+D +VV + + K+ I R S+ E +G + Sbjct: 389 DFSINSLTLFGLTLATGMVVDDAIVVVEDI--TTKIQRGGIKSRQAAIISMRELVGAVIA 446 Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 TS+ +P+A + G+ FA+ +AF I V+ ++ + + Sbjct: 447 TSLVLMAVFIPVAFFPGTTGALYRQFALTIAFSIAVSTFMALTLTPTL 494 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 28/243 (11%), Positives = 79/243 (32%), Gaps = 9/243 (3%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 L +L + L R G + + ++ + Sbjct: 794 DEMIPLGNLVTVTQTTGAQTINHYNLFRSIEINGSAAQGVSSGDAIQAMEEVAAEVLPPG 853 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLG 709 E+ G +I + +++ + + + + + L I L Sbjct: 854 LGYEWSGLSLEEIQSGGQATIIFGFGLVFVFLVLAAQYESYIDPIIILLAVPLAILGALM 913 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 +L G+ ++ ++ LIG + + +++ + +L ++ R ++ + L Sbjct: 914 AQSLRGLPNDVYCQIGLVMLIGLASKNSILIVEFAN---QLRDQGMTLRKAAIEAAQQRL 970 Query: 770 GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + T+++ + P+ + G S + G+ +A S+F+ + + I Sbjct: 971 RPILMTAISTLFGIFPLVIATGAGSGSRQSLGTAVFGGMFIATFLSLFVVPILYIVIKSG 1030 Query: 827 RAK 829 + Sbjct: 1031 SDR 1033 Score = 52.0 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 65/544 (11%), Positives = 147/544 (27%), Gaps = 37/544 (6%) Query: 2 RNNPWLVILY-----SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG--GS 54 R +L+IL ++ IGLL P +++ ++G GS Sbjct: 526 RYRRFLIILTRVKTLVIVAFIGLLALTVWVYDSVPSAFLPDEDQGYFMTI---VQGPEGS 582 Query: 55 HLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 L D + + + + DE+R+ G G + + Sbjct: 583 SLNYTHDVIEQIEDII-LPLDEVRATFAVGGFGFSGNTANSAIVFTTLKPWSERTDPSQS 641 Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171 A+ V +QG K+ + I + S + + + I Sbjct: 642 AEAVINKVQGALF----GIKEARVFPVNPPSIPGLGSFGGFQFQLQD--RRGNFSLDSLI 695 Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231 + +G + + + P ++ AK + G R Sbjct: 696 ENMGKLLGAGNQNPQLQAVFSTYAANTPQLQIEVNRNRAKALEVDIDDIFETLQTYLGSR 755 Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291 ++ D +V + + + + +G T Sbjct: 756 YVNDF--TLERRTYRVYVQADAQFRSNPEDINQLYVRSARDEMIPLGNLVTVTQTTGAQT 813 Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351 + + + + + P + Sbjct: 814 INHYNLFRSIEINGSAAQGVSSG-----------DAIQAMEEVAAEVLPPGLGYEWSGLS 862 Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411 + + + L++ Y ++ ++ L ++ L SL G Sbjct: 863 LEEIQSGGQATIIFGFGLVFVFLVLAAQYESYIDP-IIILLAVPLAILGALMAQSLRGLP 921 Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 + G+V+ IGLA ++IL+ E + + ++ + + I + I+ L Sbjct: 922 NDVYCQIGLVMLIGLASKNSILIVEFANQLRDQGMTLRKAAIEAAQQRLRPILMTAISTL 981 Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528 L G G+ + + + I+ F ++ +V + I I Sbjct: 982 FGIFPLVIATGAGSGSRQSLGTAVFGGMFIATFLSLFVVPILYIVIKSGSDRLFNSPGKN 1041 Query: 529 SRFF 532 + Sbjct: 1042 QKTP 1045 >gi|24111845|ref|NP_706355.1| acriflavine resistance protein [Shigella flexneri 2a str. 301] gi|24050639|gb|AAN42062.1| acriflavine resistance protein [Shigella flexneri 2a str. 301] Length = 1049 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 71/686 (10%), Positives = 178/686 (25%), Gaps = 44/686 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISRFYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTVQDTVTQVIEQNMTGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + +++ + S + D I + Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + +P+ L + T + N G Sbjct: 174 DVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + R I Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T A + + S Sbjct: 280 EFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526 GG R F+IT+ ++ +S+ A+ + A+ + + ++ Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWLNRM 519 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 D + + V I+ + + + +G V Sbjct: 520 FEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLP 579 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L + ++ + + E F V G +K Sbjct: 580 AGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + + ++ + Sbjct: 640 EENKVEAITMRATRAFSQIKDAMVFA 665 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V A + + + G + ++G + + Q PG S + L Sbjct: 791 VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +I+ + + + W + + L Sbjct: 851 LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSTPFSVMLVVPL 907 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+ ++ +LT IG S + +++ + + M + Sbjct: 908 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 ++ L + TS+A + V+P+ + G + + G+V A +I Sbjct: 966 DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019 >gi|330909317|gb|EGH37831.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli AA86] Length = 1034 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGQGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.3 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 83/222 (37%), Gaps = 8/222 (3%) Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666 + + G+ L + A L ++ + + + +T E++ Sbjct: 282 NGKPAAGQGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVV 341 Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 + +++ + M +++ L + + + T A FG N + + Sbjct: 342 KTLFEAIMLVFLVMYLFLQ---NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGM 398 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 + IG V+D +VV + + + + R+ +KS+++ G V +M +PM Sbjct: 399 VLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFIPM 456 Query: 787 AVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 A +GGS F+I + + ++ ++ + + + Sbjct: 457 AFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|281180308|dbj|BAI56638.1| acriflavine resistance protein [Escherichia coli SE15] Length = 1034 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQEQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.7 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I++ + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + R+ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|315300930|gb|EFU60150.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 16-3] Length = 1034 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLRVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + R+ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|90412609|ref|ZP_01220611.1| putative acriflavin resistence protein [Photobacterium profundum 3TCK] gi|90326417|gb|EAS42829.1| putative acriflavin resistence protein [Photobacterium profundum 3TCK] Length = 1051 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 77/690 (11%), Positives = 192/690 (27%), Gaps = 40/690 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + AL + +P P + G Sbjct: 8 QRPKFALVISIILTLAGAIAAL-----SLPVAEYPKISPPSV---------GVTAYYSGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + + + ++ + + ++F + V + Sbjct: 54 SAEVVEEAIADPIEASVNGVENMIYMSSKSANDGSYSLNVTFDIGTDPDMAQVNVQNRIS 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + SKL + + + +++ I DQ+ + Sbjct: 114 QIESKLPAEVRMVGVTVKKRSPDLLMVLNFYSPDGKYGDQFLVNYINLNVKDQLARVKGI 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + + DP ++ L TT+ ++ N G ++ Q Sbjct: 174 SEVNVLGGGEYAMRVWLDPEKMANLGLTTSDVNAALAEQNVQVAAGQVGAPPYNNAQEVQ 233 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + K + + + F + Sbjct: 234 FNLVTKGRL-------------ETVEEFEDVVLRANNDGSIVFLKDVARVELGKKFYTGN 280 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + ++ + + + L + S Sbjct: 281 GMFRGQPAAIVTLNLQSDANALESGDAVMSLLDGMNKNFPEGMAYETSYDTTLFVAESIK 340 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V +M + + L+ +I +++I T A++ G T+ ++ G+ Sbjct: 341 GVVVTLIQAIILVIAVTYMFLGSMRSTLIPVVAIPVSLIGTFAIMLAAGFTINTVTLFGL 400 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---ALIATV 475 +L IG+ VD ILV E + ++ S + + I S + I Sbjct: 401 ILAIGIVVDDAILVIENVDTNMARDPSLSPRQATLIAMKEVTGPIITSTMVLLAVFIPVA 460 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLS 529 +L G R FA+T+ +S++IS A+++ A+ + + + K+ + Sbjct: 461 MLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGDGNKSRWFKTFNKGLDK 520 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 ++ + + T + KG + + V Sbjct: 521 VTLKYGSIAGYLVRKSVLLVTFFILAVGAVTYLSKTTSTAFVPTEDKGILLVNVQLPDSA 580 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 LS LQ +G + + +K+ + Sbjct: 581 SLSRTEETTIKLQDILAEEPGIEGITVANGYAFLTGAAASNGASLFIKLKEW-GVRNEME 639 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIA 679 ++ + +I+ + ++ + A Sbjct: 640 GDHSSFAISNRINARSATELPEAIVFAMGA 669 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 85/247 (34%), Gaps = 10/247 (4%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + + AN + ++ N + + V Sbjct: 251 VVLRANNDGSIVFLKDVARVELGKKFYTGNGMFRGQPAAIVTLNLQSDANALESGDAVMS 310 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRF----KWYFALG 695 + + + + I GV+++ I A+++ I + + L Sbjct: 311 LLDGMNKNFPEGMAYETSYDTTLFVAES-IKGVVVTLIQAIILVIAVTYMFLGSMRSTLI 369 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 + + + + T G N + ++ IG V+D ++V + + NM + + Sbjct: 370 PVVAIPVSLIGTFAIMLAAGFTINTVTLFGLILAIGIVVDDAILVIENVDTNMARDPS-L 428 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812 S R ++ E G + ++M +P+A+ G FA+ + +V+++ ++ Sbjct: 429 SPRQATLIAMKEVTGPIITSTMVLLAVFIPVAMLPGITGIMYRQFALTICISVVISSINA 488 Query: 813 IFIAAPI 819 + ++ + Sbjct: 489 LTLSPAL 495 Score = 56.6 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 61/167 (36%), Gaps = 6/167 (3%) Query: 667 RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 + I ++ I + +++ +++ W L I + + + A+ G NL A Sbjct: 872 NQAIYAFALALIFIYLFMVAQYESWSIPLAIILVVPVATLGSFLALAITGTALNLYAQIG 931 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 ++ LI + + +++ + + ++ + + TS + + +LP Sbjct: 932 LVLLIALAAKNAILIVEFAK--IEREENELDIGKAAVRGGKLRFRAVNMTSWSFILGILP 989 Query: 786 M-AVWGGSVIG--SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 + G I S I + G++ + F+ + R K Sbjct: 990 LIFASGAGHISQNSLGISLTGGLLCVLLAGTFLIPGFFAQVQKRREK 1036 >gi|119713411|gb|ABL97473.1| protein-export membrane protein SecD [uncultured marine bacterium HF130_81H07] Length = 604 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 163/511 (31%), Positives = 272/511 (53%), Gaps = 39/511 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG + ++EVD + + L+ + +R+ L+ E + Sbjct: 103 NLAANTPDWLKALNAKPMKLGLDLRGGVNFLMEVDTELLLQTKLESTASVIRNSLRDERV 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + +NKI +S D E V L++D +NL+ + Sbjct: 163 KTNFIEIEENKILVSLVDDEKTEIFNGIVND-----LGNLDIDLDQNLVYE-------LS 210 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 S ID+ I +A+ Q++ +R R++++G+SE +QR G RI +QLPG QD + ++++ Sbjct: 211 FSDEEIDETIDYAVLQNLTTLRNRVNELGVSEPVVQREGRKRISVQLPGIQDTAEAKKII 270 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266 G TA + F +NS + + G + +E KV ISG ++ A+ FD Sbjct: 271 GKTANLEFRLEAKDNSLASRVESFPYR----GLKTRLEKKVIISGDRVSDASVGFDENGF 326 Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLTAPV 307 V+IS D G + TR+N+G + + + + Sbjct: 327 PQ-VNISLDSDGGAQMHRATRNNVGTRMAVLFVERKILSDVDSGINSIKNFYDKRIISLA 385 Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367 Q+ + + +I+G + A LA +LRAG+L +N VEE +G LG+D+I G + Sbjct: 386 TIQSALANQFRITGLDSPAEASELALLLRAGALAAPMNFVEEGTIGPSLGADNIRLGINS 445 Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427 ++ GL L+++FMI Y +G +A+ ++ LN+IL +++S+L ATLTLP IAGIVL IG+A Sbjct: 446 LILGLSLVLVFMIFYYKVFGFIANLAVLLNLILIASIMSILSATLTLPGIAGIVLTIGMA 505 Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 VD+N+L+ RIREE ++ ++ G++RA+ TI D+N+T LI ++L+ G G ++G Sbjct: 506 VDANVLIFSRIREELKRKLKPLEAITSGYNRAFITIVDANLTTLIVALILYIVGTGPIQG 565 Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYK 518 FAIT+ + IL SMFTAI R ++ FI + Sbjct: 566 FAITLSVGILTSMFTAILFTRMLVFFIYARR 596 Score = 156 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 104/267 (38%), Gaps = 5/267 (1%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 ++ G ++ VL LS V S + S++ + Q++ Sbjct: 340 QMHRATRNNVGTRMAVLFVERKILSDVDSGINSIKNFYDKRIISLATIQSALANQFRITG 399 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTE-IVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 + E+ + E +GP + + IR GI +I+ +L+++ Sbjct: 400 LDSPAEASELALLLRAGALAAPMNFVEEGTIGPSLGADNIRLGINSLILGLSLVLVFMIF 459 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 +K F A ++L++ ++ L +A ++ IG +V+ V+++ R+R+ Sbjct: 460 YYKV-FGFIANLAVLLNLILIASIMSILSATLTLPGIAGIVLTIGMAVDANVLIFSRIRE 518 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 +K + I N V ++ I L + + G I FAI ++ GI+ Sbjct: 519 ELKRKLK---PLEAITSGYNRAFITIVDANLTTLIVALILYIVGTGPIQGFAITLSVGIL 575 Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833 + ++I ++ FIY R +I Sbjct: 576 TSMFTAILFTRMLVFFIYARRRNIEKI 602 Score = 37.7 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 16/35 (45%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF 35 MR W + ++ IG++ +LPN P + Sbjct: 1 MRFQAWKIFSILIVLSIGIIFSLPNIFPPDPSVQI 35 >gi|294651480|ref|ZP_06728793.1| preprotein translocase subunit SecF [Acinetobacter haemolyticus ATCC 19194] gi|292822630|gb|EFF81520.1| preprotein translocase subunit SecF [Acinetobacter haemolyticus ATCC 19194] Length = 322 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 97/309 (31%), Positives = 154/309 (49%), Gaps = 3/309 (0%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 M + ++ D I FM+ ISIL +I SI + T GLN G+DF GG+ Sbjct: 1 MSDLTQRDSKQYGRPDDLKIIPFMKIAKPAAIISILLTIASIFFIATKGLNLGLDFTGGV 60 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + PV S V L D Q + +VR+ Q D + + + + Sbjct: 61 SAELNYQNPVQPSQVTQALNQAGFKDAVVQTLGSNTDLIVRMPVQ--DDLVVDDLSQSIT 118 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + + + + VG + EL + V ++ I MLIY+ IRF++ A+GA+ + Sbjct: 119 QAVQLPNNTVNVHKVDAVGGAVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVMS 178 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L DI +G FALF F+LT +AA+L +IG+S+ND +VV DR+R+N + + S R+ Sbjct: 179 LFHDIVIIIGAFALFQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRETSS-RE 237 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +ID ++ ETL R+++TS + V+ M + GG + F+ M G+ V SSI+I Sbjct: 238 IIDIALTETLRRTIHTSATLLLVVVAMFILGGDGLHWFSAAMIVGVFVGTYSSIYIGTAY 297 Query: 820 LLFIYDWRA 828 L+ R Sbjct: 298 ALWRGLSRQ 306 >gi|254249794|ref|ZP_04943114.1| Acriflavin resistance protein [Burkholderia cenocepacia PC184] gi|124876295|gb|EAY66285.1| Acriflavin resistance protein [Burkholderia cenocepacia PC184] Length = 1066 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 68/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I G++ + +P +P + I Sbjct: 10 RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + +E + ++ N IT++F + V + Sbjct: 56 PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 +L D ++ + T ++ + D++ + Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 Q + DP ++ Q + + N + G Q Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQSIREQNVQVAAGVIGASPSLPGTPLQL 235 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + + I + Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDIARIELDASEYGLRS 282 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L + + + A L+ + S Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV+IV+ + + + L+ ++ +++I T +LL G ++ S+ G+V Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLAFGYSINALSLFGMV 402 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480 L IG+ VD I+V E + + + I +T + V L F Sbjct: 403 LAIGIVVDDAIVVVENVERNIEGGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462 Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G + FA+T+ +S +IS F ++++ A+ +++ K + + L Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522 Query: 539 AIQFMRAR 546 + R Sbjct: 523 GFNKVFHR 530 Score = 52.4 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 90/254 (35%), Gaps = 14/254 (5%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + V ++ +R + V + ++ + V+K Sbjct: 252 IVVKTTPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695 + E+ + + +R I V+ + + A+ + + W +L Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 370 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 + + + I T FG N ++ ++ IG V+D +VV + + +N++ + Sbjct: 371 PLIAVPVSIIGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIEG---GM 427 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811 + R K++ E G + ++V + G FA+ +A V++A + Sbjct: 428 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486 Query: 812 SIFIAAPILLFIYD 825 S+ ++ + + Sbjct: 487 SLTLSPALSAILLK 500 Score = 47.8 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 3/104 (2%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L I + + I L L + N+ ++ L+G S + +++ + R+ Sbjct: 902 SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 L + + ++ L + TS+A + V+P+ G+ Sbjct: 960 -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGA 1002 >gi|260769216|ref|ZP_05878149.1| inner membrane efflux transporter of RND family multidrug efflux pump [Vibrio furnissii CIP 102972] gi|260614554|gb|EEX39740.1| inner membrane efflux transporter of RND family multidrug efflux pump [Vibrio furnissii CIP 102972] Length = 1050 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 81/692 (11%), Positives = 194/692 (28%), Gaps = 48/692 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + L + +P P + + Sbjct: 8 QRPKFALVISIILTLAGAIA-----LSILPVAEYPKISPP-------------SVSVTAF 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 ++ D + + + E + S + + +T++F + V Sbjct: 50 YTGASAEVVEQAVADPIETSVNGVENMIYMSSKSANDGSYNLTVTFDVGTDPDMAQVNVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + SKL + + + +++ + + + DQ+ Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFFSPDGRYDDMFLTNYVNLNVKDQLAR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + + DP ++ L TT+ + N G + Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPKKMASLKLTTSDVYAALAEQNVQVAAGRIGAAPYNHA 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ + K + + + + + I Sbjct: 230 QDVQFNLVTKGRLESVQ-------------EFENVVLRANNDGSSIYLKDIARIELGKKF 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + S ++ + + + + L + Sbjct: 277 YDGNGKFRGRDSSIVALSLQSDANALESGQAVMDMLETLSGNFPDGMVYETSYDTTLFVA 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV+ V ++ + + L+ +I +++I T A++ + G T+ + Sbjct: 337 ESIKSVVKTLVEAIILVIAVTYLFLGSFRSTLIPVVAIPVSLIGTFAVMLMTGFTINTVT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474 + G++L IG+ VD ILV E + K+ S + M I S + L Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTLSPRQATLMAMKEVTGPIITSTLVLLAVF 456 Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525 + L G R FA+T+ +S++IS A+++ A+ + + K+ + Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCAMVLKQGGDNTARWFKAFNR 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 I ++ V + S T + KG + + V Sbjct: 517 GLEHVTNRYGQIAGILVKKSLMLIVFFVVAVGAVSWMAKNTSTAFVPQEDKGILLVNVQL 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 LS L DG + + + T Sbjct: 577 PDSASLSRTEETTAQLMAMVEKEPGVDGVTVANGYSFMTGAAASNGASMFIKLHDWETRR 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + + +I+ + ++ + Sbjct: 637 AL-PGDHSANAISMRINGHAAQTLPQAIVFAM 667 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 88/235 (37%), Gaps = 5/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L + + D + + + + + +++ + + + + ++ P Sbjct: 262 IYLKDIARIELGKKFYDGNGKFRGRDSSIVALSLQSDANALESGQAVMDMLETLSGNFPD 321 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707 + T E I+ + ++ + I ++ + L + + + + T Sbjct: 322 GMVYETSYDTTLFVAESIKSVVKTLVEAIILVIAVTYLFLGSFRSTLIPVVAIPVSLIGT 381 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + G N + ++ IG V+D ++V + + ++S R ++ E Sbjct: 382 FAVMLMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTLSPRQATLMAMKE 440 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G + +++ LP+A+ G FA+ + +V+++ +++ ++ + Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495 Score = 45.5 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 5/122 (4%) Query: 674 IISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 + + IY + W L I + + + L G NL A ++ LI Sbjct: 877 AFALALIFIYLFMVAQYESWSIPLAIILVVPVATLGSFIALTLTGTALNLYAQIGLVLLI 936 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 + + +++ + + M+ + TS + + + P+ Sbjct: 937 ALAAKNAILIVEFAK--MEREEKDLPIEQAAIDGGKLRFRAVNMTSWSFILGIFPLIFAS 994 Query: 791 GS 792 G+ Sbjct: 995 GA 996 >gi|218706880|ref|YP_002414399.1| multidrug efflux system protein [Escherichia coli UMN026] gi|293406868|ref|ZP_06650794.1| acriflavin resistance protein F [Escherichia coli FVEC1412] gi|298382609|ref|ZP_06992206.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli FVEC1302] gi|300898038|ref|ZP_07116409.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 198-1] gi|218433977|emb|CAR14894.1| multidrug efflux system protein [Escherichia coli UMN026] gi|291426874|gb|EFE99906.1| acriflavin resistance protein F [Escherichia coli FVEC1412] gi|298277749|gb|EFI19265.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli FVEC1302] gi|300358257|gb|EFJ74127.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 198-1] Length = 1034 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|134095880|ref|YP_001100955.1| aminoglycoside/multidrug efflux pump [Herminiimonas arsenicoxydans] gi|133739783|emb|CAL62834.1| Acriflavine resistance protein B [Herminiimonas arsenicoxydans] Length = 1049 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 74/551 (13%), Positives = 161/551 (29%), Gaps = 46/551 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I G L + ++P+ P +V+ Sbjct: 8 RPVFAWVLAIFIMLAGALAI-----TSLPVSQYPNIAPPT-------------IVITATY 49 Query: 63 DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 L + + +G+ + N +IT++F+ + A V+ Sbjct: 50 PGATAQTLDDSVTSLIEQEMNGADGLQYVESQSQANGQVQITVTFSPETNPDLAAVDVSN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L+ V ++L + + + ++ + + + R ++++ Sbjct: 110 RLKRVEARLPAAVTQQGVQVAKARSNFLMFIGLSSTDGRLDPVALGDYLSRNVLNEVKRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q + DP++L L T A+++ N G + G S Sbjct: 170 PGVGQAQLFGT-ERAMRIWIDPNKLVGLNLTPAEVTAAINTQNALVAGGILGDLPSPSSQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V ++S + I I Sbjct: 229 QISATVVVNGQLS-------------SPEEFGKIILRANKDGSSVRLRDVARIEVGGQSY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + + T L V Sbjct: 276 QTSGRLDGNPTSFIGVQLSPTANALGTATAVHKKMEDLARYFPAGVKYTVPYDTSKFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + ++ L+ + + ++ T A L + G ++ + ++ Sbjct: 336 SIEEVVKTLIEAIILVFLVMYLFLQNIRYTLIPTIVVPVALLGTFATLLVFGFSINVLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + I + + + Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLSPRDATRKAMGQITGAIIGITLVLIAVFLP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFG G R F+++M S++ S A ++ A+ I +K ++ Sbjct: 456 MAFFGGAVGAIYRQFSLSMVASMVFSALMAFTLTPALCATI-----LKPVEKGHHHEKGG 510 Query: 534 IPDCIAIQFMR 544 F + Sbjct: 511 FFGWFNRIFHK 521 Score = 78.6 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V Q S + +F+ +++ + + + P Sbjct: 260 VRLRDVARIEVGGQSYQTSGRLDGNPTSFIGVQLSPTANALGTATAVHKKMEDLARYFPA 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 K + I + + +I + I + + +++ + + L + + + T Sbjct: 320 GVKYTVPYDTSKFVKISIEEVVKTLIEAIILVFLVMYLFLQNIRYTLIPTIVVPVALLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +FG N+ + ++ IG V+D +VV + + + +S RD K++ + Sbjct: 380 FATLLVFGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMSEEGLSPRDATRKAMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G + ++ LPMA +GG+V F++ M +V +A + + + Sbjct: 438 ITGAIIGITLVLIAVFLPMAFFGGAVGAIYRQFSLSMVASMVFSALMAFTLTPAL 492 Score = 55.9 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 62/163 (38%), Gaps = 10/163 (6%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 E G + + + +S IA+ + + ++ ++ L++ + Sbjct: 851 GYEWTGQSLEEQTSGNQAPALYALSLIAVFLVLAALYEST-SIPLSVMLVVPLGILGALL 909 Query: 712 ALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 + G+ ++ ++ ++G S + +++ + + L + ++++ Sbjct: 910 GVTLRGMPNDVYFKVGMIAVVGLSAKNAILIIEFAKD---LQAQGKGLIEATLEAVHLRF 966 Query: 770 GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809 + TS+A + VLP+ + G + + + G++ A Sbjct: 967 RPIIMTSLAFILGVLPLVIASGAGSASQRAIGTGVMGGMITAT 1009 >gi|149187512|ref|ZP_01865809.1| protein export protein SecD [Vibrio shilonii AK1] gi|148838392|gb|EDL55332.1| protein export protein SecD [Vibrio shilonii AK1] Length = 607 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 159/525 (30%), Positives = 261/525 (49%), Gaps = 32/525 (6%) Query: 16 CIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72 +G ++ + + S P + I LGLDLRGG +L VD D V+ Sbjct: 98 ALGEWVSKDDSMSYSYTSVAPEWLQTMGFTPIKLGLDLRGGVQFLLNVDVDQAVSEQRDA 157 Query: 73 YSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131 DE++ L+KE I +R + I ++ DS + + V + Sbjct: 158 VVDEIKQDLRKERIFGVQVRPDTDTGIRVTSKDSEGEIAVRKFVNANYPEWQA------- 210 Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191 E+SI + N + ++Q+++I+RQRI+++GI+E+ +QR G I I Sbjct: 211 -----KGEGDELSIKMKAQNYADFQNLTMQQNLKIMRQRIEELGITEAMVQRQGESGIRI 265 Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251 +LPG QDPS ++++G TA ++FH+V ++D G + K ++G Sbjct: 266 ELPGVQDPSLAKRVIGATASLAFHEVS----TSSNPVSTLKVKDEQGKPVTLVKKPVLTG 321 Query: 252 IHLNGATANFDPKTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDG 300 H+ A FD V G + V R+ Sbjct: 322 EHIVNARVGFDQMHRPEVDISLDHAGGKMMSDFSATHIGKPMATVYREYGVDARGETQRN 381 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + Q+ + +I+G+ +E A LA +LRAGSL + IVEER +GA LG+++ Sbjct: 382 EKVISVATIQSQLGSQFRITGSGNLEEAQQLALLLRAGSLTAPVTIVEERTIGASLGAEN 441 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAG 419 I G A+ G+ L + FM + Y + G VA+ ++ LN+ L L++L+ A LTLP IAG Sbjct: 442 IQNGFAALALGMGLTLTFMALWYRRLGWVANVALVLNMSCLLGLIALVPGAILTLPGIAG 501 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 +VL +G+AVD+N+L+ ERIR++ + +S ++D GF+ A +TI D+NIT +I V+L+ Sbjct: 502 LVLTVGMAVDTNVLIFERIRDKLAEGRSFAQAIDQGFNSAVATIMDANITTMITAVILYA 561 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G G ++GFA+T+GL +L SMFT I RA++ + + Sbjct: 562 IGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLKWGRDTRREVR 606 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 86/211 (40%), Gaps = 6/211 (2%) Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 G + + + + TI +G + E I+ G + + L ++ Sbjct: 401 TGSGNLEEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFM 460 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 + ++ A L+L+++ LG AL G L +A ++ +G +V+ V++++R Sbjct: 461 ALWYR-RLGWVANVALVLNMSCLLGLIALVPGAILTLPGIAGLVLTVGMAVDTNVLIFER 519 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803 +R + SF ID+ N + + ++ I+ + + G I FA+ + Sbjct: 520 IRDKLAE---GRSFAQAIDQGFNSAVATIMDANITTMITAVILYAIGNGPIQGFALTLGL 576 Query: 804 GIVVAASSSIFIAAPILLF-IYDWRAKNARI 833 G++ + + IF + I+ + R+ Sbjct: 577 GLLTSMFTGIFASRAIINLKWGRDTRREVRV 607 >gi|308185934|ref|YP_003930065.1| acriflavine resistance protein B [Pantoea vagans C9-1] gi|308056444|gb|ADO08616.1| acriflavine resistance protein B [Pantoea vagans C9-1] Length = 1051 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 71/688 (10%), Positives = 177/688 (25%), Gaps = 51/688 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I +G L L + ++++P+ P + ++ Sbjct: 8 RPIFAWVLAIIIMLVGALSIL-----KLPIEQYPNVAPPA-------------IEIQATY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L + + + + S +T+SF + +V Sbjct: 50 PGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSDSSGTLTLTISFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ D + S I D I + Sbjct: 110 KLQLATPLLPQEVQQQGIQVKKSSSSFLMVAGFISDDDNMTQNDISDFISSSIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L T + N G Sbjct: 170 KGVGDTQVFGAQ-YAMRIWMDPHKLNNYNLTPVDVISALNTQNTQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTSTD-------------EFGKILLKVNEDGSQVRLRDVARIELGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A L+ + Sbjct: 276 EIVARYNGKPASGIGIKLATGANALDTANAVKAELAKLQPTFPAGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A++S G ++ ++ Sbjct: 336 SIFEVVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVISAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLAAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++ +S+ A + A+ + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVAFILTPALCATMLKPVKKGEHGKTTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D + + V ++ + + + +G + Sbjct: 516 NRMFDKSTHHYVDSVGHMIRSTGRYMVIYLLIVVGMAFLFMRLPSSFLPEEDQGLLLAQA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + ++ + + F V G +K Sbjct: 576 QLPAGATQERTQKVLDQVTDYFLTQEKDTVKSVFTVNGFGFAGRGQNTGIAFVSLKPWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIV 671 + + + ++ Sbjct: 636 RAGSDMKVPAIAGRAMQALGAIKDAMVI 663 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 31/247 (12%), Positives = 86/247 (34%), Gaps = 6/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + + +++ ++ K+ Sbjct: 258 SQVRLRDVARIELGAENYEIVARYNGKPASGIGIKLATGANALDTANAVKAELAKLQPTF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + + + + +++ + + L + + + Sbjct: 318 PAGLKVVYPYDTTPFVKISIFEVVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ +S+ Sbjct: 378 GTFAVISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA +GGS F+I + + ++ + + + Sbjct: 436 EQIQGALVGIALVLAAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVLVAFILTPALCAT 495 Query: 823 IYDWRAK 829 + K Sbjct: 496 MLKPVKK 502 Score = 64.7 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L F Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALIF 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+ ++ V +LT IG S + +++ + + M + ++ L Sbjct: 915 TTLRGLSNDVYFVVGLLTTIGLSTKNAILIVEFAKDLMDKEGKG--LIEAALEACRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISTGAGSGSQNAVGTGVIGGMVTATILAI 1018 >gi|89075146|ref|ZP_01161582.1| Putative membrane protein SecD [Photobacterium sp. SKA34] gi|89049100|gb|EAR54666.1| Putative membrane protein SecD [Photobacterium sp. SKA34] Length = 577 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 161/515 (31%), Positives = 264/515 (51%), Gaps = 34/515 (6%) Query: 27 LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83 L ++ P + I LGLDLRGG +L+VD Q D+LR +K Sbjct: 79 LTLALEPAAPMWLQDMGFEPIKLGLDLRGGVQFLLDVDVKQVYKNHAQQLMDDLRVNFRK 138 Query: 84 EGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142 + I + +++ + + + + + Sbjct: 139 QEIRGSRAELKGMDEVIVRLPSEAANSKVRQFIREQYPQWQA-----------TNGSADN 187 Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202 + + LS+ + + ++Q+++ +R RI+++GI+E+++QR G +RI I+LPG QDP+ Sbjct: 188 LLLTLSEKEKTDLRNLTVQQNLQTMRSRIEELGITEASVQRQGENRIRIELPGVQDPAAA 247 Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 + ++G TA ++F+ V L D++GN V K + G H+ A A+F Sbjct: 248 KNVIGATASLAFYAVKE-----EGTGSTMILPDNNGNPIRVSRKPVLGGDHIVDARASFG 302 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQ 310 P V+I+ D G + + +R N+GKP+A A Q Sbjct: 303 ENGT-PEVNITLDSAGGKMMSDFSRMNVGKPMATSYSEYSRNAKGETVQTNKIISVATIQ 361 Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370 + +I+G ++E A LA +LRAGSL + IVEER +G LG+++I G A+ Sbjct: 362 TQLGSRFRITGAGSLEDAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALAL 421 Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVD 429 GL + +LFM V Y + G VA+ ++ N+I+ LL+L+ A LTLP IAG+VL +G+AVD Sbjct: 422 GLGVTLLFMAVWYRRLGWVANIALLSNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVD 481 Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 +N+L+ ERIR+ R +S+ ++D GFS A+ TIFD+N T +I VVL+ G G ++GFA Sbjct: 482 TNVLIFERIRDMIRDGRSMAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFA 541 Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +T+GL +L SMFT I RA++ + + + Sbjct: 542 LTLGLGLLTSMFTGIFASRAIINLVWGRDSRRDVR 576 Score = 129 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 95/260 (36%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G ++ V S N + + + + L G + Sbjct: 318 GKMMSDFSRMNVGKPMATSYSEYSRNAKGETVQTNKIISVATIQTQLGSRFRITGAGSLE 377 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I+ G + + L+++ + ++ Sbjct: 378 DAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALALGLGVTLLFMAVWYR-R 436 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A L+ ++ G AL G L +A ++ +G +V+ V++++R+R ++ Sbjct: 437 LGWVANIALLSNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDMIRD 496 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 S ID+ + G + I+ + + G I FA+ + G++ + Sbjct: 497 ---GRSMAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 553 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + I+ ++ ++ Sbjct: 554 TGIFASRAIINLVWGRDSRR 573 >gi|291616519|ref|YP_003519261.1| SecF [Pantoea ananatis LMG 20103] gi|291151549|gb|ADD76133.1| SecF [Pantoea ananatis LMG 20103] Length = 336 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 162/301 (53%), Gaps = 2/301 (0%) Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + L + FMR IS L I SI ++ G N+G+DF GG + + + Sbjct: 19 YNIEQLNHGRKVVDFMRWDTLAFIISGLLIIISIAIVGVRGFNWGLDFTGGTVIEINLEK 78 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P DL +R+ L + QNF ++ +VR+ G ++V Sbjct: 79 PADLDTIRAELVKAGFQEPLIQNFGSSRDVMVRMPPVTG-PAGTELGNKVVTVINQTTQQ 137 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 +T++ E VGP + +L + G + ++ + IA+LIYI IRF+W ALG + L D+ T Sbjct: 138 NATVKRIEFVGPSVGSDLAQAGALALLSALIAILIYIGIRFEWRLALGTVLALAHDVIIT 197 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G +LF +E +LT VA+++++IGYS+NDK+VV DR+R+N + S+ D+ + S+ + Sbjct: 198 CGLLSLFRVEVDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 256 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 TL R++ TS+ +L + ++GG+++ F++ M G+ + SSI++++ + L + R Sbjct: 257 TLSRTLITSLTTLAMILILFIFGGALLKGFSLTMLIGVTIGTISSIYVSSALALKLGMKR 316 Query: 828 A 828 Sbjct: 317 E 317 >gi|262275511|ref|ZP_06053321.1| inner membrane efflux transporter of RND family multidrug efflux pump [Grimontia hollisae CIP 101886] gi|262220756|gb|EEY72071.1| inner membrane efflux transporter of RND family multidrug efflux pump [Grimontia hollisae CIP 101886] Length = 1049 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 83/692 (11%), Positives = 194/692 (28%), Gaps = 48/692 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + L + +P P + + Sbjct: 8 QRPKFALVISIILTLAGAIALL-----TLPVAEYPRISPP-------------SVSVTAV 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 ++ D + + + E + S + + + ++F + V Sbjct: 50 YSGASAEVVEQAVADPIETSVNGVENMIYMSSKSANDGSYNLNVTFDIGTDPDMAQVNVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + SKL + ++ + +++ + I DQI Sbjct: 110 NRVAQIESKLPPEVRQVGVTVKKRSPDLLMVLNFYSPEGKYDDQFLVNYINLNIKDQIAR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + + +P ++ L TT+ + N G ++ Sbjct: 170 VKGISEVNVIGGGEYAMRVWLNPEKMANLGITTSDVRSVLAEQNVQVAAGDIGAPPFNNA 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + K +S + + + + ++ Sbjct: 230 QEMTFKLVTKGRLSSVE-------------EFENVVVRANPDGSMVYLKDIADVSLGKKF 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + I + ++ + + L Sbjct: 277 YTGNGKFRDRPASIVILNLQSDANALESGGLVMERLEQLAQNFPEGMSYEASYDTTLFVS 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV+ V ++ + + L+ +I +++I T A++ G T+ + Sbjct: 337 ESIKGVVKTLVEAVLLVIAVTYLFLGSFRATLIPVVAIPVSLIGTFAVMLASGFTVNTVT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIAT 474 + G++L IG+ VD ILV E + KN S + + I S + L Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTNMAKNPSLTPRQATLLAMKEVTGPIITSTLVLLAVF 456 Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525 + L G R FA+T+ +S+L+S A+++ AM I + K + Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVLLSAINALTLSPAMCSLILRQGGDNHARWFKVFNN 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + GV + T + KG + + + Sbjct: 517 GLEKITTKYGAVAGFLVRKTAVLGVLFIVAVGAAGYFAKTTSTGFVPQEDKGVMLINIQL 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 LS L + DG + + +K T Sbjct: 577 PDAASLSRTEYVTRKLGEMVTAEPGVDGATVANGYAFLTGAAASNGASMFVKLKDWETRQ 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + +I+ +I+ + + V+ + Sbjct: 637 ALDGDHSSFDII-NRINAKAAEELPEAVVFAM 667 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 90/232 (38%), Gaps = 9/232 (3%) Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 ++ + +G + ++ + S A + + E + + + Sbjct: 265 KDIADVSLGKKFYTGNGKFRDRPASIVILNLQSDANALESGGLVMERLEQLAQNFPEGMS 324 Query: 656 IVGPKISRELIRKGIVGVIISAI-AMLIYIWIRF----KWYFALGAITTLILDITKTLGF 710 + + + I GV+ + + A+L+ I + + + L + + + + T Sbjct: 325 YEASYDTTLFVSESIKGVVKTLVEAVLLVIAVTYLFLGSFRATLIPVVAIPVSLIGTFAV 384 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 G N + ++ IG V+D ++V + + NM + ++ R ++ E G Sbjct: 385 MLASGFTVNTVTLFGLILAIGIVVDDAILVIENVDTNMAKNPS-LTPRQATLLAMKEVTG 443 Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + +++ LP+A+ G FA+ + ++++A +++ ++ + Sbjct: 444 PIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVLLSAINALTLSPAM 495 Score = 52.4 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 53/440 (12%), Positives = 120/440 (27%), Gaps = 26/440 (5%) Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI--FDSNITALI 472 P + G + G A + + + G ++ I ++ + Sbjct: 600 PGVDGATVANGYAFLTGAAASNGASMFVKLKDWETRQALDGDHSSFDIINRINAKAAEEL 659 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMKSIDINPLS 529 V+F G AV G + G ++ S + M + + + I + Sbjct: 660 PEAVVFAMGPPAVPGMGPSSGFEFVLEDTLGRSRGELAMVMQQLMQKANEQPEIARTFST 719 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-- 587 +P L +N F ++ + A+ Sbjct: 720 FRANVPHFYIDIDREKAKQLGIPLSEIFTTLQGNLAGMYVNDFSLFGKNYRVTIQADGDY 779 Query: 588 ----------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637 V + + S I D + + S A Sbjct: 780 RNDLDSMGRFHVRSNTGQMIPLSTLIDIEQVFEPDVAWRYNMYRAAVIQGSPAPGYSSGD 839 Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IWIRFKWYFA 693 + + Q + ++ + + G + + + + IY + W Sbjct: 840 AIAAMERVAADVLPQGYQYEWTGMAYQEKQAGNLAIYAFALALIFIYLFMVAQYESWSIP 899 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 L I + + + A+ G NL A ++ LI + + +++ + + + Sbjct: 900 LAIILVVPVATLGSFLALAMTGTPLNLYAQIGLVLLIALAAKNAILIVEFGKNEREQNE- 958 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--SFAIPMAFGIVVAAS 810 + TS + + ++P+ G I S I + G++ Sbjct: 959 -LPIDKAAVMGGKLRFRAVNMTSWSFILGIMPLIFATGAGHISQNSLGISLTGGLLCVLL 1017 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + F+ I R K+ Sbjct: 1018 AGTFLIPGFFAVIQRLREKH 1037 >gi|237747653|ref|ZP_04578133.1| acriflavin resistance transmembrane protein [Oxalobacter formigenes OXCC13] gi|229379015|gb|EEO29106.1| acriflavin resistance transmembrane protein [Oxalobacter formigenes OXCC13] Length = 1079 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 69/625 (11%), Positives = 171/625 (27%), Gaps = 51/625 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I G++ Q + ++P+ P + + Sbjct: 8 RPVFAWVIAIFITLAGIISI-----TQLPVSQYPNIAPP-------------QVTVSATY 49 Query: 63 DDFVNGFLQ-MYSDELRSFLKK---EGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 ++ + + + + KITL+F E A V Sbjct: 50 PGATAKTVEDSVISIIEQEMNGATGLQYMESESQSNGSGKITLTFTPETDVELAAVDVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 ++ + S+L + + + + + I+ + R I+ I Sbjct: 110 RIKRIESRLPSAVSQQGVQINKARSNYVAIITLISSDGSMSPIQLGDYLSRNVINDIKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L L T ++ N ++ Sbjct: 170 PGVGDATIFGT-ENAMRIWIDPIKLTGLKLTPNDVANAIRGQNAVVTSGAIAGTPNVGTE 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + ++ + + + Sbjct: 229 TFTANVNVRGQL-------------KTAEEFGNIVLRANTDGSLVRLKDVARVELGGQSY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L I + +++ L ++ Sbjct: 276 ETYARLDGHPIAGFGVLPTPTANTMAMMQSIRDKMEELSQYFPKGVTYSIQNDTSKFVKV 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +++++ + ++ ++ + + ++ T A+++ LG ++ + S+ Sbjct: 336 SIHEVVKTLFEGIFLVFVIMYLFLQNFRYTIIPTIVVPIALMGTFAVMNALGFSINMLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ +D I+V E + + S + + I ++ + Sbjct: 396 FGMVLSIGILIDDAIVVVENVERIMATEGLSPRDATYKAMGQITGAIVGISLVLTAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+I M S+ S F A+S+ A+ I + Sbjct: 456 MAFFGGSVGAIYRQFSIAMVASMAFSAFLALSLTPALCATILKPIDPNAHEEKKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + S ++ R + + + + + +G + V Sbjct: 516 NRKFHSMTMTYERQVSKTLGRTMRYMLIYGAIVVCTAFMFWKLPTSFLPNEDQGYVYTNV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISF 608 + L+ ++ + Sbjct: 576 QLPSGATQARTLDALKVVEDQFMKE 600 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 91/235 (38%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V Q + + L +++A + + +++++ P Sbjct: 260 VRLKDVARVELGGQSYETYARLDGHPIAGFGVLPTPTANTMAMMQSIRDKMEELSQYFPK 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + K + I + + + + + +++ + + + + + + + T Sbjct: 320 GVTYSIQNDTSKFVKVSIHEVVKTLFEGIFLVFVIMYLFLQNFRYTIIPTIVVPIALMGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N+ ++ ++ IG ++D +VV + + + T +S RD K++ + Sbjct: 380 FAVMNALGFSINMLSMFGMVLSIGILIDDAIVVVENV--ERIMATEGLSPRDATYKAMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V S+ +PMA +GGSV F+I M + +A ++ + + Sbjct: 438 ITGAIVGISLVLTAVFIPMAFFGGSVGAIYRQFSIAMVASMAFSAFLALSLTPAL 492 Score = 50.1 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 26/250 (10%), Positives = 81/250 (32%), Gaps = 13/250 (5%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + L V ++ + + G + ++G + G S Sbjct: 776 MTPDDIKNLYVRNSKGTMVPFSAFSSSEWSNGPVQLIRYNGYPAMRITGSPAEGYSTGAA 835 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + + + + + +S +A+ + + ++ Sbjct: 836 MDEMVALTQQLPEGFGYEWTGQSLEEKTSGS----QAPMLFALSLLAVFLCLAALYESTS 891 Query: 693 ALGAITTLIL--DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A+ ++ +G F L G+ ++ ++ IG + + +++ + + L Sbjct: 892 IPVAVLLVVPLGVFGALIGVF-LRGMPNDVYFKVGLIATIGLAAKNAILIVEFAKD---L 947 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVV 807 +++ + TS+A + V+P+A+ G+ + + FG++ Sbjct: 948 QAQGKGLIRSTLEAVRLRFRPIIMTSLAFILGVVPLAIASGAGSAAQQAIGTGVLFGMIA 1007 Query: 808 AASSSIFIAA 817 A ++++ Sbjct: 1008 ATVLAVYLVP 1017 >gi|253771904|ref|YP_003034735.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163201|ref|YP_003046309.1| multidrug efflux system protein [Escherichia coli B str. REL606] gi|242378800|emb|CAQ33592.1| acrF, subunit of AcrEF-TolC multidrug efflux transport system [Escherichia coli BL21(DE3)] gi|253322948|gb|ACT27550.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975102|gb|ACT40773.1| multidrug efflux system protein [Escherichia coli B str. REL606] gi|253979258|gb|ACT44928.1| multidrug efflux system protein [Escherichia coli BL21(DE3)] Length = 1034 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDITQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 64.7 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMHLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|218696965|ref|YP_002404632.1| multidrug efflux system protein [Escherichia coli 55989] gi|218353697|emb|CAU99957.1| multidrug efflux system protein [Escherichia coli 55989] Length = 1034 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNSDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 65.1 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLH 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|191169156|ref|ZP_03030914.1| acriflavine resistance protein F [Escherichia coli B7A] gi|190900798|gb|EDV60589.1| acriflavine resistance protein F [Escherichia coli B7A] Length = 1034 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNSDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 65.5 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + +++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVHMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|59714332|ref|YP_207107.1| multidrug efflux system protein [Vibrio fischeri ES114] gi|59482580|gb|AAW88219.1| multidrug efflux system protein [Vibrio fischeri ES114] Length = 1050 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 78/694 (11%), Positives = 190/694 (27%), Gaps = 48/694 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + + +P P + + Sbjct: 8 QRPKFALVISIILTLAGAIALAV-----LPVAEYPKISPP-------------SVSVSAY 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 ++ D + + + E + S + + + ++F + V Sbjct: 50 YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + SKL + + + +++ + DQ+ Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYVNLNIKDQLAR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + DP ++ L TT+ + N G + Sbjct: 170 VTGISEVGVLGGGEYAMRVWLDPDKMTNLGLTTSDVHAALAEQNVQVAAGKIGAAPYASA 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ + K + + + + + + Sbjct: 230 QDVQFNLVTKGRLESVE-------------EFENVVLRANNDGSSVYLKDIARVELGKKF 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + S ++ + + + + L A Sbjct: 277 YDGNGQFRGKDASIVTLSLQSDANALESGKAVMEMLEKLSATFPEGLAYETSYDTTLFVS 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV+ V ++ + + L+ +I +++I T A++ + G T+ + Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMLMTGFTINTVT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471 + G++L IG+ VD ILV E + +++ S + + I S + Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTIMKRDPSLSPRKATLIAMKEVTGPIITSTLVLLAVF 456 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDI 525 I +L G R FA+T+ ++++IS A+++ A+ +++ + K+ + Sbjct: 457 IPVAMLPGITGIMYRQFALTICIAVIISSINALTLSPALCSLVLKRGGDNTARWFKAFNR 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + + I + T + KG + + V Sbjct: 517 GLDKVTDKYGEIAGFFVRKTMILMTFFVIALGAVTFFAKTTSTAFVPQEDKGILLVNVQL 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 LS + Q DG + + +K Sbjct: 577 PDSASLSRTEEVSAKVLEIIEQEQGVDGVTVANGYAFLTGAAASNGASLFVKLKPWGERN 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 + I R + VI + A Sbjct: 637 DMDGDNSSFAITNRINGRAAME-LPEAVIFAMGA 669 Score = 78.6 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 89/242 (36%), Gaps = 5/242 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L + + D + Q + + + +++ + + + +K++ P Sbjct: 262 VYLKDIARVELGKKFYDGNGQFRGKDASIVTLSLQSDANALESGKAVMEMLEKLSATFPE 321 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707 T E I+ + +I + + ++ L + + + + T Sbjct: 322 GLAYETSYDTTLFVSESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + G N + ++ IG V+D ++V + + + S+S R ++ E Sbjct: 382 FAVMLMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTIMKRDPSLSPRKATLIAMKE 440 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + +++ +P+A+ G FA+ + +++++ +++ ++ + + Sbjct: 441 VTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAVIISSINALTLSPALCSLVL 500 Query: 825 DW 826 Sbjct: 501 KR 502 Score = 58.5 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 64/197 (32%), Gaps = 6/197 (3%) Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695 +++ V Q + + I ++ I + +++ +++ W L Sbjct: 842 AAMERVAAEVLPHGYQYEWTGMAYQEVKAGNQAIYAFALALIFIYLFMVAQYESWSIPLA 901 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 I + + + L G+ NL A ++ LI + + +++ + + + + Sbjct: 902 IILVVPVATFGSFLALNLTGMPLNLYAQIGLVLLIALAAKNAILIVEFAKNEREE--KEV 959 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--SFAIPMAFGIVVAASSS 812 D TS + + +LP+ G I S + + G++ Sbjct: 960 GLDDASVNGGRLRFRAVNMTSWSFILGILPLVFASGAGYISQNSLGVSLIGGLLCVLLVG 1019 Query: 813 IFIAAPILLFIYDWRAK 829 + + R K Sbjct: 1020 TLLIPGFYAMVQRRREK 1036 >gi|301022225|ref|ZP_07186140.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 69-1] gi|300397638|gb|EFJ81176.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 69-1] Length = 1034 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 64/552 (11%), Positives = 153/552 (27%), Gaps = 46/552 (8%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G+L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 + FFGG R F+IT+ ++ +S+ A+ + A+ + +K + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-----LKPVSAEHHENKG 509 Query: 533 LIPDCIAIQFMR 544 F Sbjct: 510 SFFGWFNTTFDH 521 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 DYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|114765510|ref|ZP_01444618.1| Cation/multidrug efflux pump, RND family protein [Pelagibaca bermudensis HTCC2601] gi|114542103|gb|EAU45135.1| Cation/multidrug efflux pump, RND family protein [Roseovarius sp. HTCC2601] Length = 1044 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 68/585 (11%), Positives = 161/585 (27%), Gaps = 41/585 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G+L L + ++P P + + Sbjct: 8 RPVFAWVISILIMGVGVLSLL-----TLPIAQYPQIAPP-------------SVRVSAQY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + + + + S ITL+F + +V Sbjct: 50 PGASAQTVANTVTQIIEQQMTGLDGMRYMSSSSTSAGTASITLTFESGTDPDVAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L + L ++ + ++ + + S + +D+ Sbjct: 110 KLSQATALLPETVQRQGVTVEKASSSFFMVIGLISEDGRLEQADLSDYLNSNLVDEFARI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DPS+L T + + N FG + Sbjct: 170 EGVGGAQVFGAQ-YAMRIWLDPSKLAAFEMTPSDVVSAVSAQNAQISAGSFGTLPAPEGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + +S + E + Sbjct: 229 QLNATITAQSLLS-------------TPEDFRNIVLRTETNGGLVLLQDVAEVEIGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E ++ Sbjct: 276 STIARYNGQPSSGMALQLASGANALDTSERVKERIEEYSEFFPEGVGYVIPYDTTPFIEI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV V+ + + + L+ ++ + ++ T +L++ G T+ ++ Sbjct: 336 SIHEVQKTLIEAIILVFFVMLLFLQNLRATLIPTLAVPVVILGTFGILAMAGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475 +VL IGL VD I+V E + + S + + I + + + + Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERIMEEEGLSPREATRKSMGQITGALIGIALVLSAVFVP 455 Query: 476 VLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FF G R F+IT+ ++ +S+ A+++ A+ +++ K + P F Sbjct: 456 MAFFPGSTGVIYRQFSITIVSAMALSVLVALTLTPALCATLLKAKDVNHTKRGPFGWFNK 515 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 D A + + + + + + L + G Sbjct: 516 GFDKTADGYRGTVAYLIKRPLRIMLVYLALAGGMVYLFNNTPTGF 560 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 14/241 (5%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 V I + Q G L S +E + E V Sbjct: 266 AEVEIGAENYSTIARYNGQPSSGMALQLASGANALDTSERVKERIEEYSEFFPEGVGYVI 325 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 +T E+ + I +I+ ML+++ L + + I T G Sbjct: 326 PYDTTPFIEISIHEVQKTLIEAIILVFFVMLLFLQ---NLRATLIPTLAVPVVILGTFGI 382 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINE 767 A+ G N + A++ IG V+D +VV +R+ + +S R+ KS+ + Sbjct: 383 LAMAGFTINTLTMLAMVLAIGLLVDDAIVVVENVERIMEE-----EGLSPREATRKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + ++ +PMA + GS F+I + + ++ ++ + + + Sbjct: 438 ITGALIGIALVLSAVFVPMAFFPGSTGVIYRQFSITIVSAMALSVLVALTLTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 71.3 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 49/438 (11%), Positives = 130/438 (29%), Gaps = 21/438 (4%) Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 + S+ G+V N+ + ++ + S+ RA+ + Sbjct: 601 ENVESVFGVVGFSFAGQGQNMGLAFVRLKDWEERPDPSQSVQAVAGRAFPAFMGIQDAQV 660 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 V G V GF + + ++ ++ + + + S+ + L Sbjct: 661 FPIVPPSVIELGNVSGFDFYLQAQAGQTHEQLLNARNQLLGMASQSELIGSVRPSGLEDA 720 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 I + A + + + N K + A+ Sbjct: 721 AQFNLDIDWRAAGAVGVSPTDVGNLLSVAWAGQYVNDFNDNGRIKRVY-VQGEADSRATP 779 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 S ++ G++ +++ Q + + ++ Sbjct: 780 SDLQKWRVRNANGELVPFANFTSEDWAYGPQGLSRYNGIPSMQIQGEPAAGVTSGEAMAE 839 Query: 652 QNTEIVGPKISRELIRKGI------------VGVIISAIAMLIYIWIRFK-WYFALGAIT 698 + L G+ + +S A+ + + ++ W + Sbjct: 840 MERLVSELPPGYALAWTGLSLEERDSGGQAPLLYALSLAAIFLCLAALYESWTIPFSVML 899 Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758 + + + T+G FG E + +LT+IG + + +++ + R+ Y Sbjct: 900 AMPIGVLGTMGAAYWFGFENGVFFQVGLLTVIGLTGKNAILIVEFARE---RYEAGEELL 956 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA-SSSIF 814 + ++ + + TS+A + V+P+ + G + + G + IF Sbjct: 957 AAVAEAAKQRFRPIIMTSLAFSLGVVPLVLSSGAGAGGRTAVGSAVLGGTITGTVLGVIF 1016 Query: 815 IAAPILLFIYDWRAKNAR 832 + ++ + K A+ Sbjct: 1017 VPLFFVVVQRIFGRKKAK 1034 >gi|163800319|ref|ZP_02194220.1| protein export protein SecD [Vibrio sp. AND4] gi|159175762|gb|EDP60556.1| protein export protein SecD [Vibrio sp. AND4] Length = 610 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 152/516 (29%), Positives = 267/516 (51%), Gaps = 27/516 (5%) Query: 22 ALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL 81 A F S+ + + M + I LGLDLRGG +L VD D DE+++ L Sbjct: 108 ASITFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVDKAFEEQRDALVDEIKANL 167 Query: 82 KKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140 ++E I +R + QN I + + + + + +++ Sbjct: 168 REERIRGVQVRAEGQNHIAVKSENESGLKAASQFIHQNY------------PGWTTKSSD 215 Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200 + + S+ NI + + ++Q+++I+R RI+++GI+E+ +QR G I I+LPG QDP+ Sbjct: 216 RGFELQPSEQNIQEFQTTTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPA 275 Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260 + + ++G TA ++FH+ + L+D+DG + + ++G H+ A A Sbjct: 276 QAKNVIGATASLAFHEAKDAGHAQSSQ--DLVLKDNDGRTVTLAKRPVLTGEHIINARAG 333 Query: 261 FDPKTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309 D V G + V R+ + + + Sbjct: 334 VDKMGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTDERGMTERSERVISVATI 393 Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369 Q+ + +I+G +++ A LA +LRAGSL + IVEER +GA LG+++I G A+ Sbjct: 394 QSQLGSQFRITGAGSMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALA 453 Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAV 428 G+ L + FM + Y + G VA+ ++ N++ L L++LL A LTLP IAG+VL +G+AV Sbjct: 454 LGMGLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAV 513 Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488 D+N+++ ERI+++ R+ +S ++D+GF A++TI D+NIT +I V+L+ G G ++GF Sbjct: 514 DTNVIIFERIKDKMREGRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGF 573 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 A+T+GL ++ SMFT + RAM+ I + + Sbjct: 574 ALTLGLGLMTSMFTGVFASRAMINLIWGRDGRRDVR 609 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + TI +G + E I+ G + + L ++ + + Sbjct: 408 SMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWY 467 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L ++ LG AL G L +A ++ +G +V+ V++++R++ Sbjct: 468 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 526 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 M+ SF ID + + ++ I+ + + G I FA+ + G++ Sbjct: 527 MRE---GRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGFALTLGLGLMT 583 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + + +F + ++ I+ + Sbjct: 584 SMFTGVFASRAMINLIWGRDGRR 606 >gi|26249858|ref|NP_755898.1| acriflavin resistance protein F [Escherichia coli CFT073] gi|26110286|gb|AAN82472.1|AE016767_232 Acriflavine resistance protein F [Escherichia coli CFT073] Length = 1034 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMIAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.3 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I++ + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + R+ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|218691557|ref|YP_002399769.1| multidrug efflux system protein [Escherichia coli ED1a] gi|218429121|emb|CAR09928.1| multidrug efflux system protein [Escherichia coli ED1a] Length = 1034 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKPAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKPAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I++ + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + R+ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|88799560|ref|ZP_01115136.1| protein-export membrane protein SecD [Reinekea sp. MED297] gi|88777645|gb|EAR08844.1| protein-export membrane protein SecD [Reinekea sp. MED297] Length = 613 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 156/540 (28%), Positives = 274/540 (50%), Gaps = 41/540 (7%) Query: 11 YSMICCIGL-LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69 + +G + N P + + +A+ ++LGLDL GG H ++EVD D ++ Sbjct: 90 SILTTGLGGEFVIALNLAPTTP--SWLTALGGKPMALGLDLSGGVHFLMEVDMDKYIATR 147 Query: 70 LQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128 L + +++ L++EGI + + I ++ + F++ S+ Sbjct: 148 LTNWEADIKRSLREEGIRYRGVSVINDDTIQVNLVNDEFRDQA--------NRWFSRNLN 199 Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188 D + L +++ L++ I + +AI+Q+ + R+++IG++E +QR G +R Sbjct: 200 DFVTDDLTARGLPSVNLTLTEEAIIAMEDYAIQQNQTTLNNRVNEIGVAEPLVQRQGRNR 259 Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248 I++QLPGEQD +R + +LG +A + + G F ++E V Sbjct: 260 IVVQLPGEQDTARAKNILGKSANLEYRLQ------SRDGNGEVFPFRDSNRTVMLERDVI 313 Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARR---------------FFEVTRDNIGKP 293 ++G ++ AT +D V GAR F E + IG Sbjct: 314 VTGDNVTNATVTYDQNGRPAVSVTLDSAGGARMGDITKNNLNHPMGVLFIEQKSEPIGYE 373 Query: 294 LAVVLDGRVLTAPVI--------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 + + + S + Q +G + A LA +LRAG+L + Sbjct: 374 MVDGEQVMQYRNYEVKEVISLANIAGVFSSQFQTTGLDSSAEASELALLLRAGALAAPMT 433 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 VEER VG LG+++I KG ++V G L+++FM+V Y +G+ A ++ +N++L +A++ Sbjct: 434 FVEERTVGPSLGAENIAKGFTSVVIGFALVIVFMVVFYKVFGIFASVALSMNLVLVIAIM 493 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 SLLGATLTLP IAGIVL +G+AVD+N+L+ RI+EE + + ++D G+ RA+ TI D Sbjct: 494 SLLGATLTLPGIAGIVLTVGMAVDANVLIFSRIKEELNAGKPIQTAIDAGYGRAFLTILD 553 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +N+T I ++L+ G G+V+GFA+T+ + IL SMFTA+ + RA+ + + +K + I Sbjct: 554 ANVTTFIVAIILYAIGTGSVKGFAVTLSVGILTSMFTAVLLTRALTNLVYGGRNLKKLPI 613 Score = 149 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 101/282 (35%), Gaps = 5/282 (1%) Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610 +S+ + N G + + + V + + ++ Sbjct: 333 AVSVTLDSAGGARMGDITKNNLNHPMGVLFIEQKSEPIGYEMVDGEQVMQYRNYEVKEVI 392 Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE-IVGPKISRELIRKG 669 + Q+Q + E+ + E VGP + E I KG Sbjct: 393 SLANIAGVFSSQFQTTGLDSSAEASELALLLRAGALAAPMTFVEERTVGPSLGAENIAKG 452 Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 V+I +++++ + +K F + A L +++ + +L G L +A ++ Sbjct: 453 FTSVVIGFALVIVFMVVFYKV-FGIFASVALSMNLVLVIAIMSLLGATLTLPGIAGIVLT 511 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 +G +V+ V+++ R+++ + + ID + ++ FI + + Sbjct: 512 VGMAVDANVLIFSRIKEELNA---GKPIQTAIDAGYGRAFLTILDANVTTFIVAIILYAI 568 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G + FA+ ++ GI+ + +++ + + +Y R Sbjct: 569 GTGSVKGFAVTLSVGILTSMFTAVLLTRALTNLVYGGRNLKK 610 Score = 40.8 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 14/34 (41%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF 35 + W +L + + G+ +LPN P + Sbjct: 4 KYPLWKYLLIAAVLLFGIYYSLPNLYPNDPAIQI 37 >gi|306816391|ref|ZP_07450523.1| multidrug efflux system protein [Escherichia coli NC101] gi|331649067|ref|ZP_08350155.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli M605] gi|305849956|gb|EFM50415.1| multidrug efflux system protein [Escherichia coli NC101] gi|331042814|gb|EGI14956.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli M605] Length = 1034 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + R+ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|293392516|ref|ZP_06636836.1| acriflavine resistance protein B [Serratia odorifera DSM 4582] gi|291424918|gb|EFE98127.1| acriflavine resistance protein B [Serratia odorifera DSM 4582] Length = 1048 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 64/574 (11%), Positives = 157/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIVMLAGVLAIM-----KLPIAQYPTIAPPA-------------VTISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S +ITL+F + +V Sbjct: 50 PGADATTVQDTVTQIIEQNMNGIDNLMYMSSSSDSSGSVQITLTFESGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L + ++ L ++++ D + + + D I S Sbjct: 110 KLSLATPLLPQEVQQQGLKVEKSSSSFLMVAGFVSDDPNMTQDDIADYVASNIKDPISRS 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP+++ TT ++ NN G Sbjct: 170 SGVGEVQLFGAQ-YAMRVWLDPNKMNNFQLTTTDVTSAITEQNNQIAAGQLGGMPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + I + Sbjct: 229 QLNASIIAQTRL-------------KSPEEFGKILLKVNSDGSQVRLKDVARIERGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T L + Sbjct: 276 SVTARFNGKPAAGLGIKLATGANALNTAAGVKEELGKLAPFFPQGMKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SINEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMDQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ + +K + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-----LKPVAKGDHGVKTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F ++ + L + Sbjct: 511 FFGWFNRMFEKSTHHYTDSVANILRSTGRYLLIY 544 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 85/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + ++ + L +++ ++ K+ Sbjct: 258 SQVRLKDVARIERGAENYSVTARFNGKPAAGLGIKLATGANALNTAAGVKEELGKLAPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + Sbjct: 318 PQGMKVVYPYDTTPFVKISINEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 ++ G V ++ +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 DQIQGALVGIALVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 75/234 (32%), Gaps = 8/234 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + + G + ++G + + Q PG S + L Sbjct: 790 VRGDSGQMVPFSSFATAKWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMNLMEELASK 849 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ + + + W + L L Sbjct: 850 LPSGVGYDWTGMSYQERLSGNQAPSLYAISILVVFLCLA---ALYESWSIPFSVMLVLPL 906 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L + G+ ++ +LT IG S + +++ + + M+ + Sbjct: 907 GVIGALLAATMRGMNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LIESTL 964 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 +++ L + TS+A + VLP+ + G + + G++ A +I Sbjct: 965 EAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018 >gi|226306415|ref|YP_002766375.1| protein-export membrane protein SecF [Rhodococcus erythropolis PR4] gi|226185532|dbj|BAH33636.1| protein-export membrane protein SecF [Rhodococcus erythropolis PR4] Length = 407 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 73/314 (23%), Positives = 140/314 (44%), Gaps = 12/314 (3%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 L A + + R + G++ ++ + G +GIDF+GG ++ A Sbjct: 40 KHSWLSRLYTGTGAFEVVGRRRFYYGLTGALVAIALLSIILRGFTFGIDFEGGSRIQFPA 99 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKK 640 V+ S V + + G + Q+ + + + Sbjct: 100 EGGVETSEVETVYSDTLGFEPVSVQTVGSGASATVQIRSETLNATQINDLQSALFDEFQP 159 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 K P + + V ++ +K ++ +I+ + + IYI IRF+ A+ AI L Sbjct: 160 KDKNGNPSAQAISFADVSETWGGQITKKALIALIVFLVIVSIYIAIRFERDMAVAAIVAL 219 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFR 758 DI T G ++L G E V +LT++G+S+ D VVV+D++ +N + L+ T ++ Sbjct: 220 FFDIIVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVVVFDKVEENTRGVLHLTRRTYG 279 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSI 813 + + ++N+TL RS+ T++ + + V+ + V G + A+ GI+V A SSI Sbjct: 280 EQANLAVNQTLMRSINTTVISVLPVIALMVVAVWMLGVGTLKDLALVQLVGIIVGAYSSI 339 Query: 814 FIAAPILLFIYDWR 827 F A P+L+ + + Sbjct: 340 FFATPLLVSMKERW 353 >gi|209920738|ref|YP_002294822.1| acriflavine resistance protein [Escherichia coli SE11] gi|300817478|ref|ZP_07097694.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 107-1] gi|300824979|ref|ZP_07105078.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 119-7] gi|307314977|ref|ZP_07594565.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli W] gi|309793846|ref|ZP_07688272.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 145-7] gi|331670090|ref|ZP_08370935.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli TA271] gi|331679339|ref|ZP_08380011.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli H591] gi|209913997|dbj|BAG79071.1| acriflavine resistance protein [Escherichia coli SE11] gi|300522545|gb|EFK43614.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 119-7] gi|300529776|gb|EFK50838.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 107-1] gi|306905560|gb|EFN36092.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli W] gi|308122803|gb|EFO60065.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 145-7] gi|315062565|gb|ADT76892.1| multidrug efflux system protein [Escherichia coli W] gi|323183025|gb|EFZ68424.1| inner membrane protein [Escherichia coli 1357] gi|323376848|gb|ADX49116.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli KO11] gi|324020748|gb|EGB89967.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 117-3] gi|331063003|gb|EGI34917.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli TA271] gi|331073404|gb|EGI44727.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli H591] Length = 1034 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNSDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|284006430|emb|CBA71669.1| multidrug efflux protein [Arsenophonus nasoniae] Length = 1039 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 72/694 (10%), Positives = 186/694 (26%), Gaps = 55/694 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ + GLL + + + ++P+ P + + Sbjct: 8 RPIFAWVIAIITMLAGLLAII-----KLPVAQYPTIAPP-------------SISIVATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117 +Q + + + S +TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLVYMSSTSDAMGNMSLTLTFEAGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + + + + D I Sbjct: 110 KLQLAMPLLPQEVQQQGIHVNKSTGSFLMVVAFISKNGSMNQEDIADYVNSHIKDPISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L + T + + NN G Sbjct: 170 KGVGETQLFGTQ-YAMRIWLDPDKLVKYNMATQDVINAIKIQNNQVAAGQLGGTPPIPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 RLNVSIIAQTRLNNAE-------------QFANILLRVNPDGSQVRLKDVAVVELGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A + + Sbjct: 276 SIQAKYNGTASAGIGIKLATGANALDTAKAVRATLAEMELFFPNGLEIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV++V+++ + + L+ ++ + ++ T A+LS +G ++ ++ Sbjct: 336 SINEVVKTLIEAIMLVVVVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAMGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLSPKEATKKSMGQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ S+++S+ A+ + A+ I + Sbjct: 456 MAFFGGSTGAIYRQFSVTIVASMVLSVLVALILTPALCATILKPIPKGSHGKQTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + I + V IL + + L + +G + V Sbjct: 516 NRTFEKSAHHYTNSIGHMLRGTGRYLVIYVILVAGMAFLFLKLPSSFLPEEDQGVLLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L + + ++N Q + + + + Sbjct: 576 QLPPGSTQEQTVAVLNDIDQYYRTK----EKENVKSVFTVSGFGFAGQGQNMGLAFVVLQ 631 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + + ++ + K +I S Sbjct: 632 DWKERHSDKSHVSQIINRANLAFSKIQEAIIFSF 665 Score = 71.6 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + I + + +++ + + ++ Sbjct: 258 SQVRLKDVAVVELGAENYSIQAKYNGTASAGIGIKLATGANALDTAKAVRATLAEMELFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + + +++ +++ + + L + + + Sbjct: 318 PNGLEIVYPYDTTPFVKISINEVVKTLIEAIMLVVVVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + G N + A++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFAILSAMGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +PMA +GGS F++ + +V++ ++ + + Sbjct: 436 GQIQGALVGIALVLSAVFIPMAFFGGSTGAIYRQFSVTIVASMVLSVLVALILTPAL 492 Score = 71.3 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 7/196 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 + + L E G L + +IS I + + + ++ W Sbjct: 841 DAMLLMEQLTEKLPEGIGYEWTGMSYQERLSGNQAPALYVISLIVVFLCLAALYESWSIP 900 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L F ++ G+E ++ +LT IG S + +++ + + M+ Sbjct: 901 FSVMLVVPLGVIGALLFTSIRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 960 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + VLP+ + G S + G++ A + Sbjct: 961 G--LIEATLDAVKMRLRPILMTSLAFMLGVLPLVISNGAGSGAQNSVGTGVLGGMIAATT 1018 Query: 811 SSIFIAAPILLFIYDW 826 +I+ + I Sbjct: 1019 LAIYFVPVFFVVIRRR 1034 >gi|90424272|ref|YP_532642.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris BisB18] gi|90106286|gb|ABD88323.1| protein translocase subunit secF [Rhodopseudomonas palustris BisB18] Length = 334 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 118/302 (39%), Positives = 189/302 (62%), Gaps = 6/302 (1%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + L ++PD F + R IS L SI +I L FTHGLN+GIDFKGG L V Sbjct: 22 MGWLPSLRIVPDDTHFDFTQFRRISFPISALLSIAAITLFFTHGLNFGIDFKGGTLLEVQ 81 Query: 585 A-NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A D+ +R+ L +L +GD+ Q F G + L+R+ QPG AQ ++ V+ + Sbjct: 82 AKTGAADIPAMRATLSALGLGDVQLQQFGGPADVLIRVAEQPGGDAAQQEAVQKVRAAL- 140 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + E+VGP++S EL+ G++G++++ ++LIY+W RF+W FALGA+ + D Sbjct: 141 --GDNVEYRRVEVVGPRVSSELLAYGMLGLMLAIFSILIYLWFRFEWQFALGAMIANVHD 198 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I T+GF ++ ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y + L+++ Sbjct: 199 IVLTIGFMSITQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNE 257 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822 SIN TL RS+ T + +++L + ++GG I SF M FG ++V +SIFIAAPIL++ Sbjct: 258 SINSTLSRSIITHVTVTLALLALLLFGGHAIHSFTAVMMFGVVLVGTYTSIFIAAPILIY 317 Query: 823 IY 824 + Sbjct: 318 LG 319 >gi|260424674|ref|ZP_05732898.2| protein-export membrane protein SecF [Dialister invisus DSM 15470] gi|260402780|gb|EEW96327.1| protein-export membrane protein SecF [Dialister invisus DSM 15470] Length = 303 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 79/290 (27%), Positives = 142/290 (48%), Gaps = 1/290 (0%) Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + R +S L + SI + N+GIDF GG L + ++ V + VR Sbjct: 4 MFKNFDVIAKRKLWFSVSGLLVLLSIMSIIMFRFNWGIDFTGGTILELGFSQNVTVEQVR 63 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + + + Q G + + + I V + ++ E Sbjct: 64 NGIREDGLETAVIQ-LSGSIDGESGNDVIIRTRNLSANESQAIIDHINTKVGTAEVKRIE 122 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VG I E+ + ++ V++S AM++Y+ IRF+ A AI ++ DI LG FA F Sbjct: 123 TVGAVIGSEVTKNTLLNVLLSFGAMILYMTIRFEHRIAFAAIVAIVHDILMVLGVFAFFH 182 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 +E + + +AA+LT++GYS+N+ VV++DR+R+ + + + SF L + SI++T+ RS+YT Sbjct: 183 LEVDASFLAAILTVLGYSMNESVVIFDRIREAIHTHRRTDSFAILANDSIHQTIRRSMYT 242 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 + V + ++GG +FA+ M G + A SS+ +A I + ++ Sbjct: 243 LITTLFCVTSLYLFGGDTTKNFALVMLVGFISGAYSSVCVATSIWVTWHE 292 >gi|332974531|gb|EGK11451.1| protein-export membrane protein SecF [Kingella kingae ATCC 23330] Length = 313 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 150/303 (49%), Gaps = 1/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS+ I ++ LFT GLN ++F GG + V Sbjct: 1 MELFHFKRDIPFMSYGKLTTFISLATFILAVVFLFTRGLNLSVEFTGGTLMEVEYASQQG 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + + + Q N + ++ V+ ++ V +++ + + Sbjct: 61 ADLNKVRHSLETLQLGEVQVQALGTNKHIMIRLPNKADVSSAQLSNQVMEQLKKESSDVS 120 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP + EL+ G++ + + I ++ Y+ +RF+W FA+ AI + DI LG Sbjct: 121 LRQVEFIGPAVGDELVSNGLIALGMVIIGIIAYLAMRFEWRFAVSAIIANLHDIVIILGC 180 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769 FA F EF+LT +A VL ++GYSVN+ VVV+DR+R+N + + + +LID +I T+ Sbjct: 181 FAFFRWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENFLKGSMRNKTVPELIDNAITATM 240 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 GR+V T + V+ M V+GG+ + FA + GIV SS+ +A+P+LL R Sbjct: 241 GRTVITHGSTEAMVVSMLVFGGAALHGFATALTIGIVFGIYSSVLVASPLLLMFGLNRNN 300 Query: 830 NAR 832 + Sbjct: 301 VMK 303 >gi|192291800|ref|YP_001992405.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Rhodopseudomonas palustris TIE-1] gi|192285549|gb|ACF01930.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rhodopseudomonas palustris TIE-1] Length = 1076 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 75/692 (10%), Positives = 184/692 (26%), Gaps = 47/692 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++I GLL +P + +P P + Sbjct: 10 RPIFAGVLSAVIFLAGLLS-----MPVLPISEYPEVAPPTIV---------VSAQYPGAN 55 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + +E + ++ + ++F + V + Sbjct: 56 PKVIAETVSTPIEEQINGVENMLYMSSQATTDGKMTLNVTFRLGTDPDKAQQLVQNRVSQ 115 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 +L + + + T ++ + D++ Sbjct: 116 AEPRLPAEVRALGITTIKSAPDLTMVVHLMSPNDRYDMTYLRNYAVLNVKDRLARIPGVG 175 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 Q + DP ++ + + A + N G Q Sbjct: 176 QVQLFGSGDYSMRVWLDPQKVAERGLSPADVVREIRAQNVQAAAGQVGSSPGEPGLDLQL 235 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + I + G I A Sbjct: 236 SVNAQGRLQTEE-------------EFGEIIVKNGAGGEVVRLRDVARIELGAADYALRS 282 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L + + L+ + S Sbjct: 283 LLNNKSAVAIPIFQSPGSNAIQISDNVRATMKELKQNMPDGVSYDIVYDPTQFVRASIEA 342 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++V+ M + + ++ ++ ++V+ T A++ + G ++ ++ G+V Sbjct: 343 VIHTLLEAIALVVLVVIMFLQTWRASIIPLIAVPVSVVGTFAVMHVFGFSINALTLFGLV 402 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480 L IG+ VD I+V E + + + I + + V L F Sbjct: 403 LAIGIVVDDAIVVVENVERNIERGLGPKDAAYQAMREVTGPIIAIALVLVAVFVPLAFIT 462 Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G + FA+T+ +S +IS F ++++ A+ +++ + L + Sbjct: 463 GLTGQFYKQFALTVAISTVISAFNSLTLSPALAALLLKGHDAPKDALTRFMDKTLGWFFV 522 Query: 539 AIQFMRAR--------------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 AR VG+ + + H + G Q V Sbjct: 523 RFNRFFARSSEAYGRGVKRVVSRRAVGMGLYLLLVGATFYLFHAVPSGFVPGQDKQYLVG 582 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + D + + + ++ Q G +N + + + + Sbjct: 583 FAQLPDGATLDRTEDVIRRMGEIAQQEPGVENSIQFPGLSINGFTNSSNSGIVFIGLKSF 642 Query: 645 IVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674 + + ++++ I+ + + Sbjct: 643 DERKDKSLSGNAIAMSLNKKFAGIQDAFIAMF 674 Score = 65.1 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 17/232 (7%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +RS L + I G + + + + + V I Sbjct: 270 RIELGAADYALRSLLNNKSAVAIPIFQSPGSNAIQISDNVRATMKELKQNMPDGVSYDIV 329 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + E V + + + +L+ I W ++ + + + Sbjct: 330 YDPTQFVRASIEAVIHTLLEAIA-----------LVVLVVIMFLQTWRASIIPLIAVPVS 378 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + T +FG N + ++ IG V+D +VV + + +N+ + +D + Sbjct: 379 VVGTFAVMHVFGFSINALTLFGLVLAIGIVVDDAIVVVENVERNI---ERGLGPKDAAYQ 435 Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812 ++ E G + ++ +P+A G FA+ +A V++A +S Sbjct: 436 AMREVTGPIIAIALVLVAVFVPLAFITGLTGQFYKQFALTVAISTVISAFNS 487 Score = 49.7 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 6/139 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L I + + + + + + N+ ++ L+G S + +++ + R+ Sbjct: 902 SLTLPLSIIMIVPMGLLAAMFGVWVSKGDNNVFTQIGLIVLVGLSAKNAILIVEFARELE 961 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 ++ L + TSMA + V+P+ G + + + + G+ Sbjct: 962 FAGRK---PIQAAIEASRLRLRPILMTSMAFIMGVVPLVTSTGAGSEMRHAMGVAVFAGM 1018 Query: 806 VVAASSSIFIAAPILLFIY 824 + + IF + + Sbjct: 1019 IGVTAFGIFFTPMFYVLLR 1037 >gi|153007721|ref|YP_001368936.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Ochrobactrum anthropi ATCC 49188] gi|151559609|gb|ABS13107.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Ochrobactrum anthropi ATCC 49188] Length = 1049 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 82/685 (11%), Positives = 190/685 (27%), Gaps = 46/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPIAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + D + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFSDSDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + +S N FG + + Sbjct: 170 SGVGDVQLLGNIDYSMRIWLRPDKLAQYNLTPSDVSTAIQEQNAQFAAGRFGDQPDPQAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + P I A + Sbjct: 230 PFTYTATTQGRL-------------PDAAAFENIILRSSSNAATLRLKDVARVELGTESY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 277 LVDSNLNGTSAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYSIPFDTTKFIKV 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 337 SIEEVIHTFIEAIILVVLVVFIFLQNWRATLIPIIAVPISIIGTFAGMYVLGFSINLLTL 396 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + ++ S + + + + Sbjct: 397 FGLVLAIGIVVDDAIVVLENVERIMTTDKLSPRKAAIKAMGEVTGPVVAIVLVLCAVFIP 456 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINP 527 + F G G + FA+T+ +S+ +S A+++ A+ I++ + + Sbjct: 457 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPMLPFRIFNRFF 516 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + RA + + L G + +G + + Sbjct: 517 ERVTDGYSRGVRFFLKRAAIGLIIFAGLLGATYYLFERVPGSLLPDEDQGYLFSVAVLPP 576 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 L + L+ + G + + M+K P Sbjct: 577 AASLERTTAVLDQASANIRKSPAVESVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTP 636 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + +N ++ + ++ Sbjct: 637 ETDARNLPGAIMAMNSGIKDGLVLA 661 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + S +T E+I I +I+ + + I++ Sbjct: 302 NTMELIQNRMNELKASFPAGIDYSIPFDTTKFIKVSIEEVIHTFIEAIILVVLVVFIFLQ 361 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L I + + I T + G NL + ++ IG V+D +VV + + Sbjct: 362 ---NWRATLIPIIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 417 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G V + +P+A G G + FA+ +A Sbjct: 418 -ERIMTTDKLSPRKAAIKAMGEVTGPVVAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 476 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 477 ISVTLSGLVALTLTPAL 493 Score = 67.4 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 7/167 (4%) Query: 668 KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 G +I + + + + ++ +W L IT + I L L G+ ++ + Sbjct: 868 TGTQAMIFGLVMVFLILAAQYERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGL 927 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 +TLIG + + +++ + + T S + + V TS+A + V+P+ Sbjct: 928 VTLIGLAAKNAILIVEFA---VLERETGKSAIEAAASAARLRFRPIVMTSLAFILGVVPL 984 Query: 787 AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 A+ G + S + G++ A + F I K Sbjct: 985 AISTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKR 1031 >gi|317484530|ref|ZP_07943439.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila wadsworthia 3_1_6] gi|316924248|gb|EFV45425.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila wadsworthia 3_1_6] Length = 1057 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 70/689 (10%), Positives = 174/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G + L + ++PS P + + Sbjct: 8 RPVFAWVIAIIIMLAGGISIL-----NLPISQYPSIAPPT-------------IGITAQY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S Q +ITL+F+ + +V Sbjct: 50 PGASAQTVQDTVTQVIEQNMNGLDYLLYMSSTSDSSGQAQITLTFSADANPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + + + + + + + D I Sbjct: 110 KLQLATPLLPQEVQRQGISVAKRGANFLKVYAFVSEDGSMDNADIADYVATNLKDAISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L+ + + N G Sbjct: 170 SGVGEVSLFGSQYGM-RIWLDPHKLQSYKLMPSDVINAINAQNAQVSAGQLGGTPSVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + I + Sbjct: 229 QMNLAISVQERL-------------QTPEQFGNVILRTNPDGSLIRVKDVARVELGSESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A + Sbjct: 276 STLSRYNGKPATGIAVKLATGANALETASNIDDYLKGAEAFFPQGLKAVYPFDTTPVVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T +LS G ++ ++ Sbjct: 336 SIHEVVKTLGEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + +++ S + + + + + Sbjct: 396 FAVVLAIGLLVDDAIVVVENVERVMSEDKLSPKEAARKSMDQITGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F++T+ ++++S+ AI + A+ + ++ Sbjct: 456 MAFFGGSVGVIYRQFSVTIVSAMVLSVVVAIVLTPALCATMLKPIGGDHVHSQHGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + S ++ RA + + +L + +G + + Sbjct: 516 NRWFDSATLRYQSGVSYVIRRAGRFMLIYLVLIGGLVFMFKTLPTGFLPDEDQGMLFAQI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 LE ++ + + + V G+ +K Sbjct: 576 QLPTGATQEETTKVLERVERYFLEEEKESIDSLMGVLGFSFAGNGQNMAMAFVRLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 P + ++ + Sbjct: 636 RQDPSLKVDAVSKRAMAAFSKIRNAQVFA 664 Score = 78.2 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 95/273 (34%), Gaps = 6/273 (2%) Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610 S+ ++ + L F I + + V + + Sbjct: 222 TPSVPGQQMNLAISVQERLQTPEQFGNVILRTNPDGSLIRVKDVARVELGSESYSTLSRY 281 Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670 + +++ ++ K P + + I + + Sbjct: 282 NGKPATGIAVKLATGANALETASNIDDYLKGAEAFFPQGLKAVYPFDTTPVVKISIHEVV 341 Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 + + + + + +++ + + L + + + T G + FG N + AV+ Sbjct: 342 KTLGEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLSAFGYSINTLTMFAVVLA 401 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 IG V+D +VV + + + +S ++ KS+++ G V +M +PMA + Sbjct: 402 IGLLVDDAIVVVENV--ERVMSEDKLSPKEAARKSMDQITGALVGIAMVLSAVFIPMAFF 459 Query: 790 GG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819 GG VI F++ + +V++ +I + + Sbjct: 460 GGSVGVIYRQFSVTIVSAMVLSVVVAIVLTPAL 492 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 64/184 (34%), Gaps = 8/184 (4%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 + + L E G L + +S + + + + ++ W Sbjct: 837 TAMLEMEKLASQLPQGIGYEWTGLSYQERLSGSQAPALFALSILVVFLCLAALYESWSVP 896 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 I + L + LG + + ++ +L IG S + +++ + ++ L+ Sbjct: 897 FAVILVVPLGVLGALGAANMRMLSNDVYFQVGLLATIGLSAKNAILIVEFAKE---LHDK 953 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + +LP+A+ G + + G A + Sbjct: 954 GGDLIEATIEASRMRLRPILMTSLAFLLGILPLAISTGAGAGGQNAIGTGVMGGTFAATA 1013 Query: 811 SSIF 814 IF Sbjct: 1014 LGIF 1017 >gi|300928699|ref|ZP_07144217.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 187-1] gi|300463288|gb|EFK26781.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 187-1] Length = 1034 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDITQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|294635447|ref|ZP_06713935.1| acriflavine resistance protein B [Edwardsiella tarda ATCC 23685] gi|291091180|gb|EFE23741.1| acriflavine resistance protein B [Edwardsiella tarda ATCC 23685] Length = 1038 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 73/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I GLL ++++P P + + Sbjct: 8 RPIFAWVIAIIISLAGLLAI-----RDLPIEQYPDLAPPT-------------VRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S ITL+F +V Sbjct: 50 PGASAQTLENTVTQIIEQNMTGLDGLMYMSSQSSSSGSASITLTFQSGTDPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L KL + ++ + + + S++ + + + D I Sbjct: 110 QLSAATRKLPQEVQQQGIRVSKSGDSSLMTVAFVSTDGSMDRQDIADYVASNLQDPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP +L Q TT + N+ G Sbjct: 170 EGVGSVDAFGSQ-YAMRIWLDPIKLNQFALTTQDVVQAIKSQNSQIAVGQIGATPALPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + Sbjct: 229 ALNATLMAQSQL-------------QTPKQFRAITLRVNSDGSLVTLGDVAQVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A L Sbjct: 276 DYLSRFNGKPATGMSIKLASGANELATDARVKAKLAQLEPYFPHGLKVEYAYETTPFVKA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 + T LV +V+++ + + L+ ++ + ++ T A+L +G ++ ++ Sbjct: 336 AIQDVVKTLFEAILLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVLLAMGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSAREATRKSMDQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMI----------FIIRYKKMKSI 523 + FFGG R F+IT+ +++ S+ A+ + A+ + Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMIFSVLVALILTPALCATLLRPIDKTQLHGKKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + A + ++ + L ++ +G + Sbjct: 516 NRTFERSALRYENGVERVVRNAGRSMLLYLLILAGLGTLYLHLPTSFLPLEDRGVFMTQI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + D + F + G+ R+ +K Sbjct: 576 QLPVGSTQQETLKVVEKVEHYLLVDEGKDVQSVFSIVGAGPGGNGQNVARMFVRLKPWEQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + K ++ + Sbjct: 636 RPNDSDSAAAIVERASKAFAQIREARVFA 664 Score = 78.2 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 83/241 (34%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + +A ++ ++ P Sbjct: 260 VTLGDVAQVELGAEKYDYLSRFNGKPATGMSIKLASGANELATDARVKAKLAQLEPYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + + + + + + +++ + L + + + T Sbjct: 320 GLKVEYAYETTPFVKAAIQDVVKTLFEAILLVFLVMYLFLQNLRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A++ IG V+D +VV + + + +S R+ KS+++ Sbjct: 380 FAVLLAMGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSAREATRKSMDQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +GG+ F+I + ++ + ++ + + + Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMIFSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 R 498 Score = 70.9 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 46/400 (11%), Positives = 115/400 (28%), Gaps = 16/400 (4%) Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDS-------NITALIATVVLFFFGGGAVRGFAITM 492 E+ + ++ S+A++ I ++ + + + + F G Sbjct: 634 EQRPNDSDSAAAIVERASKAFAQIREARVFASSPSAISGLGSTAGFDMELEDHAGLGHDA 693 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552 + + A + A+ + + + I + Sbjct: 694 LMQARDQLLAAAAKQPALTRVRHNGMDDSPQLQVNIDQRKAQALGVNIDDINDTLKTAWG 753 Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 S + G + + + + D + + Sbjct: 754 STYVNDFLNRGRVKKVYVQGEAAYRMLPSDIDKWYVRNAQGAMVPFSAFASTDWRYGSPR 813 Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 E+ G++ + + L + E G L Sbjct: 814 LERYNGAAAVEIVGEAAPGISTGHAMDIMEQLVSELPSGFGLEWTGMSYQERLSGAQAPA 873 Query: 673 V-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 + +S + + + + ++ W + + L + + L G+E ++ +LT+I Sbjct: 874 LYALSLLVVFLCLAALYESWSIPFSVMLVVPLGVLGAVCATWLRGLENDVYFQVGLLTII 933 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789 G S + +++ + + L ++ L + TS+A VLP+A Sbjct: 934 GLSAKNAILIVEFANE---LNRNGKDLLAATLQACRLRLRPILMTSLAFIFGVLPLATSH 990 Query: 790 --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 G + + + G+V A SI+ P+ + R Sbjct: 991 GAGSASQHAVGTGVLGGMVAATLLSIYFV-PLFFILVRRR 1029 >gi|195952503|ref|YP_002120793.1| protein-export membrane protein SecF [Hydrogenobaculum sp. Y04AAS1] gi|195932115|gb|ACG56815.1| protein-export membrane protein SecF [Hydrogenobaculum sp. Y04AAS1] Length = 293 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 88/298 (29%), Positives = 151/298 (50%), Gaps = 11/298 (3%) Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 I F++ R++ ISI+ + S L+T GLN G+DF GG L V PV + V Sbjct: 1 MRIKYIHFIKYRYYSYVISIILILLSAFSLYTRGLNLGLDFTGGTMLEVRFQTPVSVKQV 60 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 L + I D Q + + + + +K + + Sbjct: 61 DDALYKVDIKDAVVQRTNTGDIIVKIRVGEKPS----------LVEKALNSIGSFQLLQR 110 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 E +G +S EL +K + VI + + +LIY+ R+++ FALG I L D+ +G ++ Sbjct: 111 EDIGSVVSGELRKKAVWAVITALVGILIYLSFRYEFLFALGGILALAHDVFIVVGAYSWT 170 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 E +L +A++L + GYS+ D VVV+DR+R+N+KL + ++I+ S+N+ + R++ Sbjct: 171 YKEVSLDVLASILVVAGYSITDTVVVFDRIRENLKL-RKGMDLSEIINLSVNQNIVRTIM 229 Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 TS F+S L + ++GGSV+ + G+VV SSIF+A+ ++L I K + Sbjct: 230 TSSTVFLSSLGLYLFGGSVLSDISFAFLIGVVVGTLSSIFVASALVLDIKILLRKIKK 287 >gi|187478148|ref|YP_786172.1| acriflavine resistance protein B [Bordetella avium 197N] gi|115422734|emb|CAJ49262.1| acriflavine resistance protein B (multidrug efflux system transmembrane protein) [Bordetella avium 197N] Length = 1055 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 63/547 (11%), Positives = 149/547 (27%), Gaps = 38/547 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G L L + ++P+ P ++ Sbjct: 8 RPVFAWVIAVVLMMAGGLSIL-----SLPVAQYPNIAPPAI---------AINVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + ITL+F + +V L Sbjct: 54 AQTVQDTVVQVIEQQMNGIDNMEYISSESNSDGSVAITLTFRQGTNPDTAQVQVQNKLAV 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + ++++ + + + D I + Sbjct: 114 AQPLLPQEVQQQGIRVTKATKNFLIVAGFVSSDGSMSKSDLADYVASYVQDPISRTRGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + P +L + + ++ N G Sbjct: 174 DFQLFGAP-YAMRVWLSPEKLNNYKLSASDVTNAIKEQNVQVSSGQLGGLPAARGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + + I Sbjct: 233 TVIGPTRL-------------QTPEEFGDILLKVNTDGSQVRLRDVGKIELGEQSYAIDS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T + L+ P + S Sbjct: 280 FYNRKPASGLAVKLASGANALDTAQAVRDTINSLKPYFPPGMEVVYPYDTTPFVSLSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+V Sbjct: 340 VIHTLIEAIVLVFLVMYLFLQNFRATLIPTLAVPVVLLGTFAVLAAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPKAATRKSMGQITGALIGIAMVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG R F+IT+ S+++S+ A+ A+ +K I Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVVVAVVFTPALCAT-----MLKPIPKGHHGTKKGFFGW 514 Query: 538 IAIQFMR 544 F R Sbjct: 515 FNRMFER 521 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 73/237 (30%), Gaps = 9/237 (3%) Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 G ++G F ++ + G S + Sbjct: 806 ADWTYGPQKLNRYNGVPAFNIQGEAAAGRSSGEAMREMERLAAKLPPGVGFEWTGLSFEE 865 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 + + + +I+ + + + W + + L + L + G+ Sbjct: 866 RRSGAQAPALYAISLIVVFLCLA---ALYESWSIPTAVMLVVPLGVLGALLATLMRGLSN 922 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 ++ +LT +G + + +++ + + Y S + + + L + TS+A Sbjct: 923 DVYFQVGLLTTVGLAAKNAILIVEFAKDY---YEQGASLVEAAVHAARQRLRPILMTSLA 979 Query: 779 AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 + V+P+A+ G + + G++ +IF + + R Sbjct: 980 FVLGVVPLAISNGAGSGSQHAIGTGVIGGMLSGTFLAIFFVPLFFVLVLRLFKVRRR 1036 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 6/176 (3%) Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 + + + P I I +I + + + + +++ + Sbjct: 301 DTAQAVRDTINSLKPYFPPGMEVVYPYDTTPFVSLSIEGVIHTLIEAIVLVFLVMYLFLQ 360 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + L + + + T A FG N + ++ IG V+D +VV + + Sbjct: 361 NFRATLIPTLAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ER 418 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801 + +S + KS+ + G + +M +PMA +GGS F+I + Sbjct: 419 VMAEEGLSPKAATRKSMGQITGALIGIAMVLSAVFIPMAFFGGSTGVIYRQFSITI 474 >gi|78192433|gb|ABB30249.1| AdeY [Acinetobacter sp. 4365] Length = 1058 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 64/554 (11%), Positives = 152/554 (27%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGIDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNSLSDSDIKDYVNSSIKEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N+ G Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T E + LR + + Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPTGLADKLAYDTTPFIRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLIEAVVWYFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + ++ + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATSRSMQQISGALIGITSVLTAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A++ A+ I++ N + F Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKAPSNNIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 M + Sbjct: 516 RGFNNGFDRMSHSY 529 Score = 77.4 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 10/235 (4%) Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 + + G + + A L ++K + +T Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPTGLADKLAYDTTPFIRL 335 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 ++ I V+ I M +++ W + + + + T +FG N Sbjct: 336 SIESVVHTLIEAVVWYFIVMFLFLQ---NWRATIIPTLAVPVVVLGTFAVINIFGFSINT 392 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV-YTSMAA 779 + A++ IG V+D +VV + + + +S+ + G + TS+ Sbjct: 393 LTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATSRSMQQISGALIGITSVLT 450 Query: 780 FISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 +PMA +GG VI F+I + +V++ ++ + I N Sbjct: 451 -AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNK 504 Score = 60.9 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 75/232 (32%), Gaps = 17/232 (7%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-- 672 + ++I +P +Q + +S E G Sbjct: 821 NGVSSVNIQGTPAPGVSSGDSMKAMEEIIAKLPSMGLQGFDYEWTGLSLEERESGAQAPF 880 Query: 673 -VIISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALF-----GIEFNLTAV 723 +S + + + + ++ F++ + L + L + + + N+ Sbjct: 881 LYALSLLIVFLCLAALYESWSIPFSVLLVVPLGIIGAIVLTYLGMIIKGDPNLSNNIYFQ 940 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 A++ +IG S + +++ + ++ L + + L + T++A V Sbjct: 941 VAMIAVIGLSAKNAILIVEFAKE---LQEKGEDLIEATLHAAKMRLRPIIMTTLAFGFGV 997 Query: 784 LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 LP+A+ G S + G++ A IF ++I + Sbjct: 998 LPLALSTGAGAGSQHSVGYGVLGGVLSATFLGIFFIPVFYVWIRSIFKYKPK 1049 >gi|317402510|gb|EFV83077.1| membrane protein [Achromobacter xylosoxidans C54] Length = 1038 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 69/543 (12%), Positives = 159/543 (29%), Gaps = 39/543 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +L +I IGL+ + + +P + Sbjct: 9 QRPVFASVLSLVIVLIGLIS-----YSRLTVREYPKIDEPIV---------SVDTTYKGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + ++ + ++ + R ++ I + F SR + A +V + Sbjct: 55 SPEVIESQVTKPLEDQLAGIEGVDVMTSRSRSERSLINIKFNLSRNPDAAAAEVRDKVSR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + ++ I+ AI+ S I R ++ + Sbjct: 115 ARRFLPDEIDEPIIGKVEADSQPIIYIAVES--GSYSAIQTSDYINRYIKTRLSVLPGAA 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + L + D +L T + N R S + Sbjct: 173 EVRVFGERLPSMRIYVDRDKLAAYGLTVQDVESALRSQNVEIPAGRIESRAREFSVVSST 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 ++ + ++ + + A Sbjct: 233 DLQTPAQFE--------------------NVIVANVKGYPVRLRDVSKVEIGAANDRILS 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + ++ + + A A L + + S Sbjct: 273 RFNGKPAINIGVTRQSTANPLELSKAAREEVARLNENLPAGMKLTIAYDSSVFIERSIDS 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++V+F + + ++ +I ++++ AL+ L G ++ ++ +V Sbjct: 333 VFHTIGEAIVLVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMV 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IGL VD I+V E I + G + +T + L F Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEDGMPRKEAALRGSREIGFAVVAMTMTLVTVYAPLAFAT 452 Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G R FA+ + ++L+S F A+++ M ++R++ S N + + Sbjct: 453 GRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQSSHSRWYNLIEGWLDAMSNG 512 Query: 539 AIQ 541 + Sbjct: 513 YRR 515 Score = 84.7 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 84/249 (33%), Gaps = 7/249 (2%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 PV L V I + + + + + ++ ++ E +P Sbjct: 252 PVRLRDVSKVEIGAANDRILSRFNGKPAINIGVTRQSTANPLELSKAAREEVARLNENLP 311 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706 I + + + +++ I+ + ++ I T+ + + Sbjct: 312 AGMKLTIAYDSSVFIERSIDSVFHTIGEAIVLVVLVIFFFLRNLRASIIPIVTIPVSLVG 371 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 LFG N + A++ IG V+D +VV + + + + ++ + Sbjct: 372 ACALMYLFGFSINTLTLLAMVLAIGLVVDDAIVVLENI---FRHIEDGMPRKEAALRGSR 428 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823 E V +M P+A G FA+ +A ++V+ ++ + + + Sbjct: 429 EIGFAVVAMTMTLVTVYAPLAFATGRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVL 488 Query: 824 YDWRAKNAR 832 ++ ++R Sbjct: 489 LRHQSSHSR 497 Score = 49.7 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 G + ++ + IY+ + W + ++ L +T L L G ++ + Sbjct: 845 SGSIYLVFAMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQI 904 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 ++TL+G +++ + +L + + + ++ L + T+ A + + Sbjct: 905 GLITLVGLITKHGILIVEF---TNQLRDEGKALFEAVTEASVLRLRPILMTTGAMVLGTV 961 Query: 785 PMAVWGGS 792 P+A+ G+ Sbjct: 962 PLALSSGA 969 >gi|46578478|ref|YP_009286.1| multidrug resistance protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603938|ref|YP_968338.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Desulfovibrio vulgaris DP4] gi|46447889|gb|AAS94545.1| multidrug resistance protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120564167|gb|ABM29911.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Desulfovibrio vulgaris DP4] gi|311232406|gb|ADP85260.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Desulfovibrio vulgaris RCH1] Length = 1046 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 72/540 (13%), Positives = 156/540 (28%), Gaps = 40/540 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G + + + ++P +P + +E Sbjct: 9 RPIFATVVSLVIILAGFMA-----MRGLPIAQYPDIIPP-------------QVEVEATY 50 Query: 63 DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + L + I S + ++F + V Sbjct: 51 SGASPEVVAATVAAPLEQQINGVDNMLYINSTSSSTGTMNLMVTFEVGTDPDQATINVNN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q +L D ++ + T + + + N I S + ID++ Sbjct: 111 RVQAALPQLPEDVRRRGVTVTKKSSNMLQVISMNSPDERYDTIYISNYALVNVIDELRRL 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + P ++ QL T + + N G + L D Sbjct: 171 KGVGDVVLFTAQDYSMRVWLQPDKMAQLRLTPSDVIGAIQEQNAQFAAGRIGQQPLHDPV 230 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 ++V K +S + I E + + Sbjct: 231 ELTFMVNTKGRLS-------------TPEEFENIILRVEEDGSTLKLKSVARVELGAKDY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A + + Sbjct: 278 NFMGKENGKPTVPIGIFLAPGANALETADRVSAAMAEMSLRFPDGVSYSIPYDTTKFVRV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+++ + + ++ ++ ++VI A + +LG T+ ++ Sbjct: 338 SIDEVVKTLFEAMVLVFIVIYLFLQNWRATIIPCLAVPVSVIGAFAGMYMLGFTINTLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + V + S I + + + Sbjct: 398 FGLVLAIGLVVDDAIIVLENVERIMAEEHLPVKQATIKAMHEVASPIVATVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FAIT+ +S+ IS A+++ A+ ++ + + Sbjct: 458 VAFAGGLAGQMYKQFAITIAVSMAISGLVALTLSPALCAMFLKPGHQEPNRFFRWFNNWF 517 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 80/237 (33%), Gaps = 6/237 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + + + + +++ + +++ P Sbjct: 266 SVARVELGAKDYNFMGKENGKPTVPIGIFLAPGANALETADRVSAAMAEMSLRFPDGVSY 325 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + K R I + + + + + + I I++ + W + + + + Sbjct: 326 SIPYDTTKFVRVSIDEVVKTLFEAMVLVFIVIYLFLQNWRATIIPCLAVPVSVIGAFAGM 385 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 + G N + ++ IG V+D ++V + + + + + K+++E Sbjct: 386 YMLGFTINTLTLFGLVLAIGLVVDDAIIVLENV--ERIMAEEHLPVKQATIKAMHEVASP 443 Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 V T + +P+A G G + FAI +A + ++ ++ ++ + Sbjct: 444 IVATVLVLCAVFIPVAFAGGLAGQMYKQFAITIAVSMAISGLVALTLSPALCAMFLK 500 Score = 58.9 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 64/166 (38%), Gaps = 7/166 (4%) Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 + + + + + + +++ W L I + + + L G++ ++ ++ Sbjct: 869 TSFMVFALGLVMVFLILAAQYEKWSLPLAVIMIVPFALFGAMAATWLRGLDNDVYLQVSL 928 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 +TLIG + + +++ + M + + ++ + TSMA + +P+ Sbjct: 929 VTLIGLAAKNAILIVEFA---MMQVHEGKGIVESVTEAARLRFRPIIMTSMAFVLGCVPL 985 Query: 787 AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 A+ G + + + G++ A + F I + A+ Sbjct: 986 AISSGAGAAGRHAIGTGIIGGMLAATFIATFFIPLFFRLIMELSAR 1031 >gi|324119446|gb|EGC13329.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli E1167] Length = 1034 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKNVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKNVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|294141987|ref|YP_003557965.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12] gi|293328456|dbj|BAJ03187.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12] Length = 1047 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 69/687 (10%), Positives = 184/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + ++PS P + + Sbjct: 8 RPIFAWVIAIIVMLAGVLSIF-----KLPVSQYPSIAPPTVV---------IWAMYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTMEDSVTQVIEQRMTGIDNLRYISSTSDSFGNAEITLTFNAEADPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 +L ++ ++ + T E ++L + S + D + Sbjct: 114 AMPQLPLEVQQQGVKVTKSSEGFLMLVGFVSKDDSLDKNDISDYVASNIQDPLSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L + T+ + N G Sbjct: 174 NIELFGAQ-YAMRIWLDPLKLTEYHLTSIDIMASIREQNAQISAGQLGASPALPGQVLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + I + + + Sbjct: 233 TVSAQSRL-------------QTPDQFKKIIIKADSSGAKVLLEDVARVELGGESYTVNS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T + A ++ + S Sbjct: 280 FYNGKPTVGIAIHLATGANAIATADAVREEIAEMQPFLPKGVEVVYPYDTTPFVERSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +++++ + + L+ ++ + ++ T A+LS G ++ ++ +V Sbjct: 340 VVHTLLEAVVLVFLIMYLFLQNLRATLIPTIAVPVVLLGTFAILSAAGFSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + +T V + F Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPVEATKKSMGQITGALVGIGLTLAAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 G R F++T+ ++ +S+ A+ + A+ + + + + Sbjct: 460 SGSTGVIYRQFSVTIISAMGLSVMVALILTPALCATMLKPIKKDQSHTQTGFFGWFNRSF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + R + L + + + +G + + Sbjct: 520 DKLTSGYTNSVTAMIKRTGRVMLIYLGLVIAMAWIFIHMPTAFLPDEDQGIMFNQAVLPV 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 L ++ + ++ ++ + F V G +K Sbjct: 580 NSSLESTEKVMKRVTDYYLNDESENVNSIFSVSGFSFAGRGQNMGVNFVSMKDWSEREGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 I++ + + +V + Sbjct: 640 GQDIKSVADRAMTQFKLIKDASVVAFV 666 Score = 71.6 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 81/247 (32%), Gaps = 6/247 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + +++A + ++ +P Sbjct: 260 VLLEDVARVELGGESYTVNSFYNGKPTVGIAIHLATGANAIATADAVREEIAEMQPFLPK 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 I + ++ + + + + +++ + L + + + T Sbjct: 320 GVEVVYPYDTTPFVERSIEGVVHTLLEAVVLVFLIMYLFLQNLRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + G N + A++ IG V+D +VV + + + +S + KS+ + Sbjct: 380 FAILSAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPVEATKKSMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V + +PMA GS F++ + + ++ ++ + + + Sbjct: 438 ITGALVGIGLTLAAVFVPMAFMSGSTGVIYRQFSVTIISAMGLSVMVALILTPALCATML 497 Query: 825 DWRAKNA 831 K+ Sbjct: 498 KPIKKDQ 504 Score = 69.3 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 66/185 (35%), Gaps = 8/185 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + +S I + + + ++ W I + L + L Sbjct: 853 FGIEWNGLSYEERLSGDQAPALYALSIIVVFLVLAALYESWSVPFSVILVVPLGVIGALI 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 G+ ++ A+LT +G + + +++ + ++ Y D ++ L Sbjct: 913 TMNSRGLPNDVFFQVALLTTVGLATKNAILIVEFAKEY---YEKGTPLVDATLHAVRVRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A + VLP+A+ G + + G++ + IF + + Sbjct: 970 RPILMTSLAFGLGVLPLAISTGVGSGSQNAIGTAVLGGMMSSTFMGIFFIPIFFVVVERI 1029 Query: 827 RAKNA 831 K+ Sbjct: 1030 FNKSK 1034 >gi|282897255|ref|ZP_06305257.1| SecF protein [Raphidiopsis brookii D9] gi|281197907|gb|EFA72801.1| SecF protein [Raphidiopsis brookii D9] Length = 318 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 87/311 (27%), Positives = 160/311 (51%), Gaps = 16/311 (5%) Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV------ 583 + I ++ + + I I L G+DF GG +L + Sbjct: 1 MRLHVNKWRNIWWLFSSVIIISGIISMVISWQIPTIKAPLRPGLDFIGGTRLQLVRDCQQ 60 Query: 584 --LANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKK 640 N+P+D++VVR + +G+ S Q + ++ + D+ + R+ + + Sbjct: 61 PGNCNQPIDINVVREVAKEQGLGESSIQLISDNGEQNGITIRTKNLDTEQRVRLQSALSQ 120 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 K+ P + VGP + REL R GI+ +I+S I + IY+ +RF+W +A+ AI L Sbjct: 121 KVGVFDP--QKNQIDDVGPTLGRELFRSGIIALIVSFIGITIYLAVRFQWDYAVFAIIAL 178 Query: 701 ILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 + DI T+G F++FG IE + + A+LT+ G+SVND VV+YDR+R+N+K+ + Sbjct: 179 LHDILVTVGIFSIFGLVFGIEVDSLFIVALLTITGFSVNDTVVIYDRIRENIKVNPQT-P 237 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 ++D ++++TL RS+ T++ +S++ + ++GG + F++ + G SSIFIA Sbjct: 238 IDRIVDDAVDQTLTRSINTTLTTMLSLVAIFIFGGETLKYFSLALIIGFGAGVYSSIFIA 297 Query: 817 APILLFIYDWR 827 + +L + Sbjct: 298 STLLTLWRERS 308 >gi|325915104|ref|ZP_08177430.1| protein-export membrane protein SecD [Xanthomonas vesicatoria ATCC 35937] gi|325538626|gb|EGD10296.1| protein-export membrane protein SecD [Xanthomonas vesicatoria ATCC 35937] Length = 614 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 140/517 (27%), Positives = 252/517 (48%), Gaps = 36/517 (6%) Query: 30 SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89 S + + + + + LGLDL GG H ++VD+ V ++ +++++R+ L+ I Sbjct: 106 STVPEWLAKLGGKPMVLGLDLVGGVHFAMQVDQKAAVEKRIEGFAEDIRTTLRDGRIAYR 165 Query: 90 SM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148 ++ R+ N I +S + + + + L + + I++ + Sbjct: 166 AVERRGDNSIQISLGEGASADAARTALAK------------AQPTLTYDVSGQNIAVKVP 213 Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208 + + Q+ S AIEQ++ +R R++ +G+SE TIQR G RI+++LPG QD + ++L+G Sbjct: 214 EAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGA 273 Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATANFD 262 TA + F V+ N++ G G L+ + ++G + A+ + D Sbjct: 274 TASLEFRAVVEGNAEDAVRSGSIPPEAKVYRVRDTGAPVLLNKRALVTGDQMVSASVSND 333 Query: 263 PKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRVLTA 305 V + G R T + + + Sbjct: 334 QNGMPAVSVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEAL 393 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 A GK + A LA +L++GSL ++ VEE +G LG++++ +G Sbjct: 394 SPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGV 453 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 A+V + ++F + Y +G + ++ N+++ +A++SL GAT+TLP AG+ L +G Sbjct: 454 TAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVG 513 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 L+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG G + Sbjct: 514 LSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPL 573 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +GFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 574 KGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610 Score = 150 bits (379), Expect = 6e-34, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 94/254 (37%), Gaps = 4/254 (1%) Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + V+ + + E + + +Q Sbjct: 363 LMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLEKTEAENLAKL 422 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 K + ++GP + E + +G+ V+ S + L++ I ++ F Sbjct: 423 LKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRV-FGAITSVA 481 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L+ ++ + +LFG L A + +G SV+ V++ +R+R+ ++L + + Sbjct: 482 LLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRL---GVPAKS 538 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 I + G + ++ I + + +G + FA+ M GI + ++I ++ + Sbjct: 539 AIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRAL 598 Query: 820 LLFIYDWRAKNARI 833 + IY R K + Sbjct: 599 AVLIYGSRKKLKTV 612 Score = 43.1 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 34/123 (27%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W L ++ + L ALPN + + Sbjct: 2 LEFPRWKYFLILLVLAVSALYALPNIYQKDPSVQ-------------------------- 35 Query: 61 DEDDFVNGFLQMYSDELRSFLKKE----GIGVFSMRQIQNKITLSFADSRFKENIADKVT 116 D LRS + E GI ++ + + + + + + D + Sbjct: 36 ----ITASRGAQLDDALRSRIDGELKAAGITPKAVTKEGDSLMVRLPSLQAQTRANDVLR 91 Query: 117 LFL 119 L Sbjct: 92 QQL 94 >gi|296157261|ref|ZP_06840097.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia sp. Ch1-1] gi|295892597|gb|EFG72379.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia sp. Ch1-1] Length = 1069 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 68/575 (11%), Positives = 156/575 (27%), Gaps = 46/575 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+ + ++P+ P + + Sbjct: 8 RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPA-------------VQISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 ++ + + + S + ITL+FA + +V Sbjct: 50 PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L ++ T +++ + + + + + D + Sbjct: 110 KLQLATPLLPQAVQQLGTKVTKSSSSFLLVMAFVSEDGSMNKYDLANYVASNIQDPVSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + D ++L T + N G G Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVQTALTAQNVQVAGGSLGGTPSVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + + + + + + I Sbjct: 229 VLQATITEATLL-------------NTPEQFGNVLLKVNPDGSQVRIKDVGRIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A L + Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATAKAVREKVAELSKYFPHGLVVQYPYDTTPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A++ L+G ++ S+ Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMGLVGFSINTLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMQEEGLSPRDATRKAMDQITGALVGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F++T+ ++++S+ A+ + A+ I +K I+ R Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIEKGHQERTTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 F R+R S L + Sbjct: 511 FFGWFNRTFNRSRDKYHSGVHHVIKRSGRWLIIYM 545 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V + + + +++A + + ++++ Sbjct: 258 SQVRIKDVGRIELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVREKVAELSKYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + R I + + ++ + + + +++ + L + + + Sbjct: 318 PHGLVVQYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T L G N ++ ++ IG V+D +VV + + + +S RD K++ Sbjct: 378 GTFAIMGLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMQEEGLSPRDATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G V ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 76/221 (34%), Gaps = 8/221 (3%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + ++G ++ PG S Q + + + Sbjct: 816 ERYNGISAVEIQGAAAPGKSTGQAMTAMEALVAKLPAGVGYEWTGLSLQERQSGSQAPIL 875 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + +++ + + + W I + L + L L G+E ++ +LT Sbjct: 876 YGISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 +G S + +++ + R+ + + ++ L + TS+A + V+P+A+ Sbjct: 933 TVGLSAKNAILIVEFARE--LQQGQGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990 Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 G + + + G++ A +IF+ + I Sbjct: 991 SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 Score = 54.7 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 67/520 (12%), Positives = 137/520 (26%), Gaps = 28/520 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I +I +GLL + P L G + Sbjct: 536 RSGRWLIIYMVVIFAVGLLFV------KLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + L + S G Q + + D +++ KV + Sbjct: 590 LKDVSDYLLNTEKSIVESTFTVNGFSFAGRGQNAGLVFVRMKDYSVRQHSDQKVQALVGR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L+ I + + D + E + + + + + Sbjct: 650 LFMHFGSYKNA-LVYPVNPPSIPELGTAAGFDFELQDRAGVGHEKLMEARNMLLGMAAKD 708 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 L R Q + + +S + S V D+DG Sbjct: 709 PTLAQVRPNGLNDTPQFKVDIDHEKASALGVSLSAIDQTFSIAWASQYVNNFLDTDGRI- 767 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 KV + G + + + R Sbjct: 768 ---KKVYLQGDAPFRMKPEDLNAWY-------VRNGAGNMVPFSSFASGTWTYGSPKLER 817 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + +G ++A + ++ER G S Sbjct: 818 YNGISAVEIQGAAAPGKSTGQAMTAMEALVAKLPAGVGYEWTGLSLQERQSG------SQ 871 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 I +V + L + + L VI L +L G + G++ Sbjct: 872 APILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 +GL+ + IL+ E RE + + + I +++ ++ + L Sbjct: 932 TTVGLSAKNAILIVEFARELQQGQGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAIS 991 Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 G + + +L + F AI ++ + I Sbjct: 992 NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 >gi|260072733|gb|ACX30629.1| preprotein translocase subunit SecF [uncultured bacterium ARCTIC96BD-19] Length = 308 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 95/289 (32%), Positives = 161/289 (55%), Gaps = 7/289 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I F+ R + + S + + SI + GL +GIDF GG + + DL +RS L Sbjct: 11 IDFVGKRKFAMIFSAVLLVLSITSIGFQGLKFGIDFTGGTLIELGYENTADLEDIRSKLS 70 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + Q F + L++L+ Q S + + + + I+ E VGP Sbjct: 71 EGDFKGTNVQYFGSDTEVLIQLEPQEVSSAKLSSSIIRM------LGDGIDIRRVEFVGP 124 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL G + ++ + I +LIY+ RF++ FALG+I L+ D+ TLG F++ IEF+ Sbjct: 125 KVGEELTNDGGLAMLYALIGILIYVAFRFEYRFALGSIAALVHDVIITLGIFSILQIEFD 184 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AA+L +IGYS+ND +VV+DR+R+N L T + +I++++N+TL R++ TS+ Sbjct: 185 LTVLAAILAVIGYSLNDTIVVFDRIRENF-LSTRQVEAEPIINEALNQTLSRTLMTSLTT 243 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + +L + GG VI SFA + G++V SSI++A+ ++L + + Sbjct: 244 LLVLLALFYLGGEVIHSFAGALLIGVIVGTYSSIYVASSMILALGISKE 292 >gi|323966444|gb|EGB61878.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli M863] gi|327251360|gb|EGE63049.1| inner membrane protein [Escherichia coli STEC_7v] Length = 1034 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLVAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|282864184|ref|ZP_06273240.1| protein-export membrane protein SecF [Streptomyces sp. ACTE] gi|282560671|gb|EFB66217.1| protein-export membrane protein SecF [Streptomyces sp. ACTE] Length = 368 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 13/301 (4%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 F+ R G+SIL +I +I L GLN GI+FKGG V +S + Sbjct: 18 YDFIGKRKIWYGVSILITITAIVGLAVSGLNMGIEFKGGAVFTTDEKPKVSVSQAHESAV 77 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + Q +R+Q D+ V + + + N ++VGP Sbjct: 78 EASGHEAIVQELGDGN---LRIQITEVDTAKANEVKTQLSDDL---GIPESKINADLVGP 131 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ K G+ I + +++Y+ I F+W A+ A+ LI DIT T+G +AL G E Sbjct: 132 SWGEQIANKAWTGLGIFMVLVVVYLAIAFEWRMAIAALVALIHDITITVGVYALVGFEVT 191 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777 V +LT++GYS+ D VVV+D ++++ T ++ ++ ++SIN TL RS+ T++ Sbjct: 192 PGTVIGLLTILGYSLYDTVVVFDSLKESTVSITKQTRWTYSEIANRSINGTLVRSINTTV 251 Query: 778 AAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 A + V + GG V + ++ + G+ A SSIFIA P++ + + + Sbjct: 252 VALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLKEREPQMKA 311 Query: 833 I 833 + Sbjct: 312 L 312 >gi|331684906|ref|ZP_08385498.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli H299] gi|331078521|gb|EGI49727.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli H299] Length = 1034 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|226366285|ref|YP_002784068.1| preprotein translocase subunit SecF [Rhodococcus opacus B4] gi|226244775|dbj|BAH55123.1| protein-export membrane protein SecF [Rhodococcus opacus B4] Length = 408 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 12/313 (3%) Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 L A + + R + ++ + S+ + G GIDF+GG ++ A Sbjct: 30 HSWLSRLYTGTGAFEVVGRRKFYYILTGTIVLISLLSILVRGFTLGIDFEGGSRIQFPAG 89 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKK 641 VD + V + D G + AQ + + + K Sbjct: 90 GGVDTAQVENVYSEALGMDPVSVQTVGSGSSATVQIRSEALDAAQVVTLQNALYDEFQPK 149 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 ++ + + V ++ +K ++ +++ + + IYI +RF+ A+ AI L Sbjct: 150 DSDGTVNENVISVADVSETWGGQITQKALIALLVFLVIVSIYIAVRFERDMAIAAIVALF 209 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRD 759 DI T G ++L G E V +LT++G+S+ D VVV+D++ +N + L+ T ++ + Sbjct: 210 FDIAVTAGVYSLVGFEVTPATVIGLLTILGFSLYDSVVVFDKVEENTRGILHLTRRTYAE 269 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIF 814 + ++N+TL RS+ T++ + + VL + V G + A+ GI+V A SSIF Sbjct: 270 QANLAVNQTLMRSINTTLISVLPVLALMVVAVWMLGVGTLKDLALVQLVGIIVGAYSSIF 329 Query: 815 IAAPILLFIYDWR 827 A P+L+ + + Sbjct: 330 FATPLLVTLKERW 342 >gi|75675960|ref|YP_318381.1| preprotein translocase subunit SecF [Nitrobacter winogradskyi Nb-255] gi|74420830|gb|ABA05029.1| protein translocase subunit secF [Nitrobacter winogradskyi Nb-255] Length = 352 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 120/307 (39%), Positives = 191/307 (62%), Gaps = 6/307 (1%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 L +IPD F R R IS + SI +I L FTHGLN+GIDFKGG L V Sbjct: 22 FGLLPSLRIIPDDTKFDFTRFRRISFPISAVLSIVAITLFFTHGLNFGIDFKGGTLLEVQ 81 Query: 585 ANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A VD++ +R+ L L +G++ Q F G + L+R+ QPG AQ ++ V+ + Sbjct: 82 AKSGEVDIASMRATLSKLDLGEVQLQQFGGPTDVLIRVAEQPGGDAAQQEAVQKVRGAL- 140 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + E+VGP++S EL+ G++G+I++ I +L+Y+W RF+W FALGA+ + D Sbjct: 141 --GETVNYRRVEVVGPRVSGELLAYGMIGLILAIIGILVYLWFRFEWQFALGAMIANVHD 198 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I T+GF ++ ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y + +L++ Sbjct: 199 IVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREILRRY-KKMPMPELLNA 257 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822 SIN TL RS+ T + +++L + ++GG I SF M FG ++V +SIFIAAPIL++ Sbjct: 258 SINSTLSRSIITHVTVTLALLALLLFGGPAIHSFTAVMTFGVVLVGTYTSIFIAAPILIY 317 Query: 823 IYDWRAK 829 + ++ Sbjct: 318 LGVGESR 324 >gi|193071528|ref|ZP_03052438.1| acriflavine resistance protein F [Escherichia coli E110019] gi|192955165|gb|EDV85658.1| acriflavine resistance protein F [Escherichia coli E110019] Length = 1034 Score = 196 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALVTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALVTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|315181756|gb|ADT88669.1| acriflavin resistance plasma membrane protein [Vibrio furnissii NCTC 11218] Length = 1050 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 81/692 (11%), Positives = 194/692 (28%), Gaps = 48/692 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + L + +P P + + Sbjct: 8 QRPKFALVISIILTLAGAIA-----LSILPVAEYPKISPP-------------SVSVTAF 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 ++ D + + + E + S + + +T++F + V Sbjct: 50 YTGASAEVVEQAVADPIETSVNGVENMIYMSSKSANDGSYNLTVTFDVGTDPDMAQVNVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + SKL + + + +++ + + + DQ+ Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFFSPDGRYDDMFLTNYVNLNVKDQLAR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + + DP ++ L TT+ + N G + Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPKKMASLKLTTSDIYAALAEQNVQVAAGRIGAAPYNHA 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ + K + + + + + I Sbjct: 230 QDVQFNLVTKGRLESVQ-------------EFENVVLRANNDGSSIYLKDIARIELGKKF 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + S ++ + + + + L + Sbjct: 277 YDGNGKFRGRDSSIVALSLQSDANALESGQAVMDMLETLSGNFPDGMVYETSYDTTLFVA 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV+ V ++ + + L+ +I +++I T A++ + G T+ + Sbjct: 337 ESIKSVVKTLVEAIILVIAVTYLFLGSFRSTLIPVVAIPVSLIGTFAVMLMTGFTINTVT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474 + G++L IG+ VD ILV E + K+ S + M I S + L Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTLSPRQATLMAMKEVTGPIITSTLVLLAVF 456 Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525 + L G R FA+T+ +S++IS A+++ A+ + + K+ + Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCAMVLKQGGDNTARWFKAFNR 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 I ++ V + S T + KG + + V Sbjct: 517 GLEHVTNRYGQIAGILVKKSLMLIVFFVVAVGAVSWMAKNTSTAFVPQEDKGILLVNVQL 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 LS L DG + + + T Sbjct: 577 PDSASLSRTEETTAQLMAMVEKEPGVDGVTVANGYSFMTGAAASNGASMFIKLHDWETRR 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + + +I+ + ++ + Sbjct: 637 AL-PGDHSANAISMRINGHAAQTLPQAIVFAM 667 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 88/235 (37%), Gaps = 5/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 + L + + D + + + + + +++ + + + + ++ P Sbjct: 262 IYLKDIARIELGKKFYDGNGKFRGRDSSIVALSLQSDANALESGQAVMDMLETLSGNFPD 321 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707 + T E I+ + ++ + I ++ + L + + + + T Sbjct: 322 GMVYETSYDTTLFVAESIKSVVKTLVEAIILVIAVTYLFLGSFRSTLIPVVAIPVSLIGT 381 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + G N + ++ IG V+D ++V + + ++S R ++ E Sbjct: 382 FAVMLMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTLSPRQATLMAMKE 440 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G + +++ LP+A+ G FA+ + +V+++ +++ ++ + Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495 Score = 45.5 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 5/122 (4%) Query: 674 IISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 + + IY + W L I + + + L G NL A ++ LI Sbjct: 877 AFALALIFIYLFMVAQYESWSIPLAIILVVPVATLGSFIALTLTGTALNLYAQIGLVLLI 936 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 + + +++ + + M+ + TS + + + P+ Sbjct: 937 ALAAKNAILIVEFAK--MEREEKDLPIEQAAIDGGKLRFRAVNMTSWSFILGIFPLIFAS 994 Query: 791 GS 792 G+ Sbjct: 995 GA 996 >gi|229491971|ref|ZP_04385788.1| preprotein translocase subunit SecF [Rhodococcus erythropolis SK121] gi|229321103|gb|EEN86907.1| preprotein translocase subunit SecF [Rhodococcus erythropolis SK121] Length = 407 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 73/314 (23%), Positives = 140/314 (44%), Gaps = 12/314 (3%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 L A + + R + G++ ++ + G +GIDF+GG ++ A Sbjct: 40 KHSWLSRLYTGTGAFEVVGKRRFYYGLTGALVAIALLSIILRGFTFGIDFEGGSRIQFPA 99 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKK 640 V+ S V + + G + Q+ + + + Sbjct: 100 EGGVETSAVETVYSDTLGFEPVSVQTVGSGASATVQIRSETLNATQINDLQSALFDEFQP 159 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 K P + + V ++ +K ++ +I+ + + IYI IRF+ A+ AI L Sbjct: 160 KDKNGNPSAQAISFADVSETWGGQITKKALIALIVFLVIVSIYIAIRFERDMAVAAIVAL 219 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFR 758 DI T G ++L G E V +LT++G+S+ D VVV+D++ +N + L+ T ++ Sbjct: 220 FFDIIVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVVVFDKVEENTRGVLHLTRRTYG 279 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSI 813 + + ++N+TL RS+ T++ + + V+ + V G + A+ GI+V A SSI Sbjct: 280 EQANLAVNQTLMRSINTTVISVLPVIALMVVAVWMLGVGTLKDLALVQLVGIIVGAYSSI 339 Query: 814 FIAAPILLFIYDWR 827 F A P+L+ + + Sbjct: 340 FFATPLLVSMKERW 353 >gi|167647986|ref|YP_001685649.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Caulobacter sp. K31] gi|167350416|gb|ABZ73151.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Caulobacter sp. K31] Length = 1049 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 76/687 (11%), Positives = 187/687 (27%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L + ++P+ + + + Sbjct: 9 RPIFAWVVAIVIMLAGVLAI-----RTLPIAQYPNIALP---------QVSVNAIYPGAS 54 Query: 63 DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ L + S TL+F + +V LQ Sbjct: 55 AKTVEDSVTQVIEQKMKGLDGLDYMSSTSDSSGSATTTLTFKAGTNIDIAQVQVQNKLQT 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L + ++ L +++ + + + + I D + + Sbjct: 115 ATALLPQEVQQQGLTVAKSARNFLLIVGMYSEDPKTTNTDLADYIASNLQDPLSRVDGVG 174 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP++L T A + N G G Sbjct: 175 EVQLFGAQ-YAMRVWLDPTKLASYSLTPADVIAAIKAQNAQVSAGQLGGTPNLPGIGLNA 233 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + +S + I + G + G Sbjct: 234 TITAQSRLS-------------TPAEFQNIIVKNSAGGAIVHLRDVARVELGAESYGFGA 280 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T + + L ++ + S Sbjct: 281 KYNGKPAAGLAIRLAPGANALDTADAIKARMSQLEKNFPANFKYVIPYDSTPFVRLSIEE 340 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV IV+F+ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 341 VVKTLIEAIVLVFIVMFLFLQNWRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFGLV 400 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + S + + + + V + FF Sbjct: 401 LAIGLLVDDAIVVVENVERVMSEEGLSPIEATRKSMNEITGALIGIALVLAAVFVPMAFF 460 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++ +S+ A+ + A+ + + N Sbjct: 461 GGSQGVIYRQFSITIVSAMALSVLVALILTPALCATLLKPVAKGHTIADKGFFGWFNRNF 520 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + ++ W V ++ + + + +G + V Sbjct: 521 NDVSHRYQGTVRGLLGKSGRWLVAYGVIILLVGFLFIRLPSAFLPEEDQGTMYALVQLPP 580 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ L++++ + + + F V G +K Sbjct: 581 GAPEERTQAVLDTVRSHFLVDEKDSVQAVFTVAGFSFAGAGQNAGLAFIRLKDFDQRKAA 640 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 ++ + ++ Sbjct: 641 NLKAPAIAGRAMGKFMQIRDAMVFAIV 667 Score = 85.5 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + L +++ ++ ++ + P Sbjct: 261 VHLRDVARVELGAESYGFGAKYNGKPAAGLAIRLAPGANALDTADAIKARMSQLEKNFPA 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + R I + + +I + + + I +++ + W L + + + T Sbjct: 321 NFKYVIPYDSTPFVRLSIEEVVKTLIEAIVLVFIVMFLFLQNWRATLIPTIAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G A FG N + ++ IG V+D +VV + + + +S + KS+NE Sbjct: 381 FGVLAAFGYSINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPIEATRKSMNE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + ++ +PMA +GG VI F+I + + ++ ++ + + + Sbjct: 439 ITGALIGIALVLAAVFVPMAFFGGSQGVIYRQFSITIVSAMALSVLVALILTPALCATLL 498 Query: 825 D 825 Sbjct: 499 K 499 Score = 68.6 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 57/147 (38%), Gaps = 6/147 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W L I + L I L +L G+ ++ +LT +G + + +++ + + Sbjct: 893 SWSIPLSVIMVIPLGIVGALLATSLRGLSNDIYFQVGLLTTMGLASKNAILIVEFAKD-- 950 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ + + +++ L + TS+A VLP+A+ G + + G+ Sbjct: 951 -LHEKGMDLVEATVEAVRIRLRPIIMTSLAFVFGVLPLAISNGAGSGSQHAIGTGVIGGM 1009 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A +IF + + R Sbjct: 1010 ISATLLAIFFVPLFFVIVERIFKPKPR 1036 >gi|291284633|ref|YP_003501451.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor [Escherichia coli O55:H7 str. CB9615] gi|290764506|gb|ADD58467.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor [Escherichia coli O55:H7 str. CB9615] gi|320645628|gb|EFX14637.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor [Escherichia coli O157:H- str. 493-89] gi|320650938|gb|EFX19395.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor [Escherichia coli O157:H- str. H 2687] gi|320656319|gb|EFX24231.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662009|gb|EFX29417.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor [Escherichia coli O55:H7 str. USDA 5905] Length = 1034 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 71/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 S + D L + T + + N+ G Sbjct: 169 LNSVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|239831137|ref|ZP_04679466.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Ochrobactrum intermedium LMG 3301] gi|239823404|gb|EEQ94972.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Ochrobactrum intermedium LMG 3301] Length = 1051 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 83/685 (12%), Positives = 190/685 (27%), Gaps = 46/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPIAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + D + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFSDSDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + I + P +L Q T + +S N FG + + Sbjct: 170 QGVGDVQLLGNIDYSMRIWLRPDKLAQYNLTPSDVSTAIQEQNAQFAAGRFGDQPDPQAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + P I A + Sbjct: 230 PFTYTATTQGRL-------------PDAAAFENIILRSSPNAATLRLKDVARVELGTESY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 277 LVDSNLNGTSAVPIAIYLQPGANALNTMELIQNRMDELKASFPAGIDYSIPFDTTKFIKV 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 337 SIEEVIHTFIEAIILVVLVVFIFLQNWRATLIPIIAVPISIIGTFAGMYVLGFSINLLTL 396 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 397 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 456 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINP 527 + F G G + FA+T+ +S+ +S A+++ A+ I++ + + Sbjct: 457 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPMLPFRIFNRFF 516 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + RA V + L G + +G + + Sbjct: 517 ERVTDGYSRGVRFFLKRAAIGLVIFAGLLGATYYLFERVPGSLLPDEDQGFLFSVAVLPP 576 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 L + L+ + G + + M+K P Sbjct: 577 AASLERTTAVLDQASANIRKNPAVESVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTP 636 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + +N ++ + ++ Sbjct: 637 ETDARNLPGAIMGMNAGIKDGLVLA 661 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 75/197 (38%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 ++ +K + S +T E+I I +I+ + + I++ Sbjct: 302 NTMELIQNRMDELKASFPAGIDYSIPFDTTKFIKVSIEEVIHTFIEAIILVVLVVFIFLQ 361 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L I + + I T + G NL + ++ IG V+D +VV + + Sbjct: 362 ---NWRATLIPIIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 417 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 418 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 476 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 477 ISVTLSGLVALTLTPAL 493 Score = 67.8 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 83/266 (31%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 774 FRRDPSDLKHVFVRANSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKITGNPAPGFTSG 833 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I + + + + ++ Sbjct: 834 DAIKAMQEVAAEVLPQGYQIAWTGSAYQEVTTSG-----TGTQAMIFGLVMVFLILAAQY 888 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + + +++ + Sbjct: 889 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 945 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + T S + + V TS+A + V+P+A+ G + S + G Sbjct: 946 VLERETGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAISTGAGSASRHSIGTGVIGG 1005 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1006 MLAATFIATFFIPMFYSLIARKPPKR 1031 >gi|163748850|ref|ZP_02156102.1| AcrB/AcrD/AcrF family protein [Shewanella benthica KT99] gi|161331624|gb|EDQ02429.1| AcrB/AcrD/AcrF family protein [Shewanella benthica KT99] Length = 1047 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 74/687 (10%), Positives = 185/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + ++PS P + + V Sbjct: 8 RPIFAWVIAIIVMLAGVLSIF-----RLPVSQYPSIAPPSVV---------ISAVYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + ++ + L + +ITL+F + +V LQ Sbjct: 54 AKTMEDSVTQVIEQRMTGLDNLRYISSTSDSFGNAQITLTFNAETDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + + + +++ + S + D + Sbjct: 114 AMPLLPQEVQAQGVNVSKSSAGFLMVLGFVSQDGSLDRNDISDYVASNIQDPMSRVAGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L Q T+ + N G Sbjct: 174 TIQLFGAQ-YAMRIWLDPFKLTQFNLTSIDIMASIREQNAQVSAGQLGGVPSVGGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + I + + + Sbjct: 233 TVSAQSRL-------------QTVDQFERIIVKSDPSGANVYLKDVARVELGAESYSSES 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T ++A + S Sbjct: 280 FYNGKPAAGIGIQLATGANALATAGAIRAKIDEMKAFFPQGLEVVYPYDTTPFVEQSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +++F+ + + L+ ++ + ++ T A+LS +G ++ ++ +V Sbjct: 340 VVHTLIEAIVLVFLIMFLFLQNFRATLIPTIAVPVVLLGTFAILSAVGFSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + S + + + +T V + F Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEEGLSPVEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 G R F++T+ ++ +S+ A+ + A+ + I + + Sbjct: 460 SGSTGVIYRQFSVTIVSAMGLSVMVALILTPALCATMLKPMKKGQTHINTGFFGWFNRSF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D +A R + +L + + +G + + Sbjct: 520 DKMTSRYTDTVAAMIKRTGRVMLIYLVLVVAMGWIFMRMPTAFLPDEDQGIMFTQAILPV 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 L + +E + ++ ++ + E F V G+ +K Sbjct: 580 NSTLESTQKVMEDVTDYFLNEESENVESVFTVSGFSFAGNGQNMGIAFVSMKDWSEREGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 I++ ++ + + Sbjct: 640 GQDIKSVAARAMGKFMQMKEAFVFAFV 666 Score = 70.9 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 82/227 (36%), Gaps = 8/227 (3%) Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665 + + G L + A ++ +K + + + +T + + Sbjct: 281 YNGKPAAGIGIQLATGANALATAGAIRAKIDEMKAFFPQGLEVVYPYDTTPFVEQSIEGV 340 Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 + I +++ + M +++ + L + + + T + G N + A Sbjct: 341 VHTLIEAIVLVFLIMFLFLQ---NFRATLIPTIAVPVVLLGTFAILSAVGFSINTLTMFA 397 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 ++ IG V+D +VV + + ++ +S + KS+++ G V + +P Sbjct: 398 MVLAIGLLVDDAIVVVENV--ERVMHEEGLSPVEATKKSMDQITGALVGIGLTLSAVFVP 455 Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 MA GS F++ + + ++ ++ + + + K Sbjct: 456 MAFMSGSTGVIYRQFSVTIVSAMGLSVMVALILTPALCATMLKPMKK 502 Score = 70.1 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 68/186 (36%), Gaps = 8/186 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + +S + + + + ++ W I + L I L Sbjct: 853 FGVEWNGLSYEERLSGNQAPALYALSIVVVFLVLAALYESWSVPFSVILVVPLGIIGALI 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 G+ ++ A+LT +G + + +++ + ++ Y + D ++ L Sbjct: 913 AMNARGLPNDVFFQVALLTTVGLATKNAILIVEFAKEY---YDKGATLVDATLHAVRVRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TSMA + V+P+A+ G + + G++ + IF + + Sbjct: 970 RPILMTSMAFGLGVVPLAISTGVGSGSQNAIGTGVLGGMMSSTFMGIFFIPIFFVVVERL 1029 Query: 827 RAKNAR 832 +K + Sbjct: 1030 FSKREK 1035 >gi|291443391|ref|ZP_06582781.1| export membrane protein SecF [Streptomyces roseosporus NRRL 15998] gi|291346338|gb|EFE73242.1| export membrane protein SecF [Streptomyces roseosporus NRRL 15998] Length = 372 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 82/326 (25%), Positives = 146/326 (44%), Gaps = 13/326 (3%) Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574 ++ + + L + F+R R G+SIL +I +I + GL GI+ Sbjct: 5 PPNRRRREMSRLGNFGARLYRGEVGYDFIRNRKIWYGVSILITITAIIGVAVGGLRMGIE 64 Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 FKGG + + Q +R+Q D+ + Sbjct: 65 FKGGAVFTTDTKAQISTAQATDVATEASGHQAIVQELGNGG---LRIQITEVDTAKANEI 121 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 E + ++ ++VGP ++ K G+ + I ++IY+ I F+W A+ Sbjct: 122 KETLSDELGLPANDINA---DLVGPSWGEQIANKAWTGLGVFMILVVIYLAIAFEWRMAV 178 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT- 753 A+ LI DIT T+G +AL G E V +LT++GYS+ D VVV+D +++ K T Sbjct: 179 AALIALIHDITITVGVYALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEGQKDITKQ 238 Query: 754 -SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVV 807 ++ ++ ++SIN TL RS+ T++ A + V + GG V + ++ + G+ Sbjct: 239 TRFTYSEIANRSINSTLVRSINTTVVALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAA 298 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 A SSIFIA P++ + + + + Sbjct: 299 GAYSSIFIATPLVADLKERDPQMKAL 324 >gi|77459119|ref|YP_348625.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas fluorescens Pf0-1] gi|77383122|gb|ABA74635.1| putative multidrug efflux system transmembrane protein [Pseudomonas fluorescens Pf0-1] Length = 1032 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 84/687 (12%), Positives = 180/687 (26%), Gaps = 47/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I G L PQ + ++P P + + Sbjct: 8 RPVFAWVVALFILLAGALAI-----PQLPVAQYPDVAPP-------------QIEIYAVY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118 + + + L I +F E V Sbjct: 50 PGASAQTVDESVVSLIEEELNGADHLLYFESQSSLGSATIKATFQPGTNPELAQVDVQNR 109 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 L+ V S+L + L ++L + S + R +++I + Sbjct: 110 LKVVESRLPQAVNQQGLQVEKVSAGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRID 169 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + + DP +L T A ++ V N G + Sbjct: 170 GVGKAQLYGA-ERAMRIWVDPQKLIGFNLTPADVNAAIVAQNAQVSAGSIGDLPNPSTQE 228 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 + K ++S + + + Sbjct: 229 ITATILVKGQLS-------------TPEEFADIVLKANPDGSTVRIKDVARVEIGSQEYQ 275 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 G L + T L + S Sbjct: 276 FGTRLNGKPSTAVGVQLSPGANALSTATLIRAKMDELSRYFPAGVEYKIPYDTSPFVKVS 335 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 + T LV V+F+ + ++ L+ + + ++ T A + LG ++ + ++ Sbjct: 336 ITKVIYTLGEAMLLVFAVMFLFLQNIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMF 395 Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ VD I+V E + + S + S+ I + + + + Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMATEGLSPKEATRKAMSQITGAIIGITLVLVAVFIPM 455 Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527 F G R F+++M SIL S F A+++ A+ + ++K Sbjct: 456 AFMQGSVGVIYRQFSLSMATSILFSAFLALTLTPALCATLLKPIAKGEHHEKTGFFGWFN 515 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 LI + G + I + L L + + Sbjct: 516 RRFEQLIDRYQGWVGYALKRTGRYLLIYVVLLVGLGLCFARLPSSFLPVEDQGYTITDIQ 575 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + ++ ++ + G + V L + S + K ++ Sbjct: 576 LPPGASKNRTVQVVEQIEAHNAGEPGVGDSTVILGFSFSGSGQNAALAFTTLKDWSQRGS 635 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 + + ++ V+ Sbjct: 636 DDSASSIADRANIALSQIKDAVAFAVL 662 Score = 77.4 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 86/243 (35%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V Q + + ++++ ++ +++ Sbjct: 257 STVRIKDVARVEIGSQEYQFGTRLNGKPSTAVGVQLSPGANALSTATLIRAKMDELSRYF 316 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I K I + + + + +++ + + L + + + Sbjct: 317 PAGVEYKIPYDTSPFVKVSITKVIYTLGEAMLLVFAVMFLFLQNIRYTLIPTLVVPVALM 376 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G N+ + ++ IG V+D +VV + + + T +S ++ K++ Sbjct: 377 GTFATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMATEGLSPKEATRKAM 434 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822 ++ G + ++ +PMA G VI F++ MA I+ +A ++ + + Sbjct: 435 SQITGAIIGITLVLVAVFIPMAFMQGSVGVIYRQFSLSMATSILFSAFLALTLTPALCAT 494 Query: 823 IYD 825 + Sbjct: 495 LLK 497 Score = 55.5 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 48/409 (11%), Positives = 121/409 (29%), Gaps = 16/409 (3%) Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIAT 474 S + + + L +++ +++ S+ + A S I D+ A++ Sbjct: 605 STVILGFSFSGSGQNAALAFTTLKDWSQRGSDDSASSIADRANIALSQIKDAVAFAVLPP 664 Query: 475 VVL-------FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 V F F G + + A +M Sbjct: 665 PVDGLGTSSGFEFRLQDRGGLGHATLMEARTQLLEAAEKSPILMNVRESALAEAPQVQLE 724 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + R I+ + S + + + +L Sbjct: 725 VDRKQANALGISFADVGNVLSTAIGSSYVNDFPNQGRMQRVVVQAEGDRRSQVDDLLKMH 784 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + + L + + + G+ E +++ + Sbjct: 785 VRNEAGKMVPLSAFVRATWTQGPAQLTRYNGYPAISISGEPKPGHSTGEAMEEIERLVAQ 844 Query: 648 LSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 E G + L + + + +S + + + + ++ W + + L + Sbjct: 845 GPKGLGQEWTGLSLQERLSGSQAPILLGLSLLIVFLCLAALYESWSIPTSVLLVVPLGVL 904 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 + L G+ ++ ++T+IG S + +++ + + LY D ++ Sbjct: 905 GAVLAVTLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAK---SLYDEGHDLIDATLQAA 961 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASS 811 L V TS+A + V+P+A+ G+ S + G++ A + Sbjct: 962 RLRLRPIVMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLA 1010 >gi|32476773|ref|NP_869767.1| acriflavine resistance protein B [Rhodopirellula baltica SH 1] gi|32447319|emb|CAD77145.1| acriflavine resistance protein B [Rhodopirellula baltica SH 1] Length = 1072 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 67/544 (12%), Positives = 162/544 (29%), Gaps = 31/544 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I +G + + ++PS P + Sbjct: 30 RPIFASVLSFVIVLVGGI-----VYFTLPVSQYPSVAPPTVL---------VRASYPGAT 75 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + + ++ + + S ++T++F ++ V + Sbjct: 76 PEVIADTVATPIEQEMNGVDDMLYMESSSSSDGTMQLTVTFKLGTDLDDAQVLVQNRVAI 135 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S+L ++ + TT + +++ N + S + D + + Sbjct: 136 AESRLPEQVRQIGVTTTKQIPDMLMVVHLNSPDDSRDQLYISNYAFLRVRDALMRLDGVG 195 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + + D ++ + T ++ N + G ++ Q Sbjct: 196 EIRIAGGNEYAMRIWLDIEKMTHVDLTAGEVVDAIQAQNIQVAAGVIGQPPTDETGDFQL 255 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + + I R I Sbjct: 256 NVTTQGRL-------------IREDEFGDIIVKRGEDGRITRLRDVARIELGAQDYSRLS 302 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + + + T + + + + S + Sbjct: 303 YLDGKSAIAVLVYQRPGTNAVDTAAEVKRVMSEMSEEFPQGIGYEIAYNPTDYVEDSIAE 362 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T I V++ +F+ + + ++ +I +++I T A++ LG TL S+ G+V Sbjct: 363 VFETLFITTIFVVLTVFLFLHGWRPTIIPVIAIPISLIGTFAVMQFLGVTLNTLSLFGLV 422 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IG+ VD I+V E + + + + S + + + + V F Sbjct: 423 LAIGIVVDDAIVVVENVERLIAEGMTAREATHKAMDEVGSALIATTLVLIAVFVPTVFVP 482 Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G + FA+T+ +S IS F ++++ A+ ++R K F Sbjct: 483 GISGQFYQQFALTISISTAISTFVSLTLSPALCALLLRPKNAPKNRTGKAIDFLFGWFFR 542 Query: 539 AIQF 542 Sbjct: 543 LFNR 546 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 77/215 (35%), Gaps = 10/215 (4%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 + RV+ + ++ + + N E+ + I + + Sbjct: 320 TNAVDTAAEVKRVMSEMSEEFPQGIGYEIAYNPTDYVEDSIAEVFETLFITTIFVVLTVF 379 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ W + + + + + T G+ N ++ ++ IG V+D +VV Sbjct: 380 LFL---HGWRPTIIPVIAIPISLIGTFAVMQFLGVTLNTLSLFGLVLAIGIVVDDAIVVV 436 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFA 798 + + +L ++ R+ K+++E + T++ +P G FA Sbjct: 437 ENV---ERLIAEGMTAREATHKAMDEVGSALIATTLVLIAVFVPTVFVPGISGQFYQQFA 493 Query: 799 IPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832 + ++ ++ S+ ++ + L + A R Sbjct: 494 LTISISTAISTFVSLTLSPALCALLLRPKNAPKNR 528 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 63/213 (29%), Gaps = 9/213 (4%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + +E + + + ++ + V+ +A+ Sbjct: 857 TTVPGFSTGQSLATMEQLADQNLPPGFGYEWTEIAFQERQAGNTIVFLFPLAVLFVFLAL 916 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 W L I + L + L G++ N+ + LIG + + +++ Sbjct: 917 S---AQYESWLLPLAIILIVPLCLLFALSGVWFRGMDNNVLTQIGFIVLIGLACKNAILI 973 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797 + + D + L + T+ + + V+P+ V G + Sbjct: 974 VEFAKAEEDAGKNRF---DAAIAACRLRLRPILMTAFSFILGVVPLLVATGAGFEMRRVL 1030 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + G++ +F+ + + + K Sbjct: 1031 GTAVFAGMLGVTVFGLFLTPVFYVMLRRFAKKK 1063 >gi|298717518|ref|YP_003730160.1| RND efflux system inner membrane transporter component [Pantoea vagans C9-1] gi|298361707|gb|ADI78488.1| Putative RND efflux system, inner membrane transporter component [Pantoea vagans C9-1] Length = 1053 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 77/686 (11%), Positives = 187/686 (27%), Gaps = 34/686 (4%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ I G+L + ++P P + Sbjct: 8 RRPVFAWVIALCIMMFGILSI-----NSLPVAQYPDVAPP---------QISIQATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + + + ++ + L + Q KI ++F + +V + Sbjct: 54 SAETLESSVTQVIEQQLTGLDGLLYFDATSTASTGQVKINVTFQQGTDPDIAQVQVQNKV 113 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 Q S+L + + +++ S + + + ++ D + Sbjct: 114 QQAESRLPTAVTSQGVTVQKAQSDFLLILALYDKTNKSSSSDVADYMVSNMEDSLARVPG 173 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 + DP+RL + ++ N G + Sbjct: 174 VGSVQVFGA-EYAMRIWLDPARLTSFSLMPSDVTTALESQNTQVSSGQLGAQPASKEQQL 232 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 V + + + + + + Sbjct: 233 VATVRSRSRL-------------QTPEQFRNIVLKSQADGSVVRLSDVARVEMGNEDYSS 279 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + + + T E R+ + S Sbjct: 280 NVLANGHPASGIAVQLASGANALSTAEQVKAKINEFRSTMPAGYEIAYPLDSTDFVKISI 339 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 T LV+IV+F+ + + L+ ++ + ++ T +LSL G ++ ++ G Sbjct: 340 EEVVKTLIEAVILVVIVMFVFLQNIRTTLIPAIAVPVVLLGTFGVLSLFGYSINTLTMFG 399 Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVL 477 +VL IGL VD I+V E + + + + I + + + + + Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMREEGLPPRQATEKSMKEITGALIGIAMVLSAVFLPMT 459 Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535 FF G R F+IT+ S+++S+ A+++ A+ +++ +S F Sbjct: 460 FFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLLKPHNHESGSTGFFGWFNRSY 519 Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595 + + ++ V S+ + + LL Y G + V + Sbjct: 520 ERVQARYQNGVGHVVNSSVRYLLLYGVLLIGCAGLYMRLPTGFLPTEDQGYIMVQYQLAP 579 Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 E+ + + + + + Sbjct: 580 GATENRTSDVRRQVQHYFATQEKDNVNVSMLVNGFSFAGNGQNAGIGFIALKNWSEREGS 639 Query: 656 IVGPKISRELIRKGIVGVIISAIAML 681 K + G+ + I +L Sbjct: 640 ENSADAIAGRAMKALSGIRDAQIFVL 665 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V LS V + + + + ++++ ++ + +P Sbjct: 262 VRLSDVARVEMGNEDYSSNVLANGHPASGIAVQLASGANALSTAEQVKAKINEFRSTMPA 321 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + I + + +I + I ++I +++ + L + + + T Sbjct: 322 GYEIAYPLDSTDFVKISIEEVVKTLIEAVILVVIVMFVFLQNIRTTLIPAIAVPVVLLGT 381 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G +LFG N + ++ IG V+D +VV + + + + R +KS+ E Sbjct: 382 FGVLSLFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMREEGLPPRQATEKSMKE 439 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + +M LPM + GS F+I + +V++ ++ + + + Sbjct: 440 ITGALIGIAMVLSAVFLPMTFFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLL 499 Query: 825 D 825 Sbjct: 500 K 500 Score = 61.2 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 78/241 (32%), Gaps = 8/241 (3%) Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + S ++ + + G + + + + L Sbjct: 795 SSNTTMVPFSSFASMKWAYGPDVLSRYNGLASYEIQGSPASGKSSGDAITAMEKLVAKLP 854 Query: 650 TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 G +L + + IS I + + + ++ W + + L + Sbjct: 855 AGNTFAWSGLSYQEKLSGNQAMSLYGISLIVVFLCLAALYESWSIPFSVMMVVPLGVIGA 914 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 L L G+E ++ A+LT+IG S + +++ + + Y S + Sbjct: 915 LLATTLRGLENDVYFQVALLTIIGLSAKNAILIVEFAEE---QYRKGESLVRAATHAATM 971 Query: 768 TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 L + TS+A VLP+A+ G + + + G + A +IF + + Sbjct: 972 RLRPIIMTSLAFTAGVLPLAISTGAGANSRIAIGTGIIGGTLTATLLAIFFVPLFFVLVR 1031 Query: 825 D 825 Sbjct: 1032 R 1032 >gi|257460759|ref|ZP_05625860.1| protein-export membrane protein SecF [Campylobacter gracilis RM3268] gi|257442090|gb|EEV17232.1| protein-export membrane protein SecF [Campylobacter gracilis RM3268] Length = 322 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 97/285 (34%), Positives = 163/285 (57%), Gaps = 4/285 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 FM+ R++ +S + I SI L F G++YGIDF GG + V + L +R E Sbjct: 10 YDFMKFRYFTFTLSAVLIIGSIALFFIKGVSYGIDFSGGTLIQVKYDVKAPLDEIRKRFE 69 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + +G+I+ F ++ +R + + KI + I+ +IVGP Sbjct: 70 AANLGNINVTEFGSDQEVTIRYSGAASELGDNPALAAQ---KILQGSGNFDIRKVDIVGP 126 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 K+ EL GI+ V +S +L+YI +RF+W FA+ A+ + + D+ +G L G++FN Sbjct: 127 KVGEELRTNGILAVCVSFALILVYITLRFEWRFAVAAVLSDLHDVVVAVGAMILAGVDFN 186 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 L +AA+LT++GYS+ND +VV+DR+R+ +K + SI ++I++SI+ TL R++ TS+ Sbjct: 187 LEILAALLTIMGYSLNDTIVVFDRIREGVKD-SKSIKLDEVINESISHTLSRTLLTSLTT 245 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 I ++ + VWGG +I F+ M G+V SS+F+AAP+L+ Sbjct: 246 LIVIVILFVWGGEMIHGFSFVMLIGVVAGTFSSVFVAAPMLILFK 290 >gi|268679792|ref|YP_003304223.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Sulfurospirillum deleyianum DSM 6946] gi|268617823|gb|ACZ12188.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Sulfurospirillum deleyianum DSM 6946] Length = 1042 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 76/688 (11%), Positives = 181/688 (26%), Gaps = 50/688 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ GL+ ++ +P P + +E Sbjct: 9 RPIFATVLSIVVIIAGLMSI-----RALPIEEYPEVTPP-------------QVSVEATY 50 Query: 63 DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + L + + + I + F + V Sbjct: 51 AGASAETISKTVAAPLEQQINGVEDMIYMSSTASSTGSLSINVYFKIGTDPDQATINVNN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q +KL + + + T + + + I + + ID++ Sbjct: 111 RVQAALNKLPSEVQAQGVTVTKQSSTILKVISIISPNNSYDEIYMANYALINVIDELKRV 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + P +L + T + N F + S Sbjct: 171 EGVGNASLFGNQNYSMRVWMKPDQLAKYNLTPTDVINAISEQNAQFATGRFNQSPSKTSQ 230 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + V + K + I + Sbjct: 231 AYTFTVTTQGR-------------FDKVEEFEKIILKSNKDGSTLRLKDVARLELGAESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + ++ + T + L Sbjct: 278 DVTSTLNGQTMVPIGIYLQSGANALDTAKRVDEAMERLSKSFPENMEYRTPYDTTKFIQI 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV+ ++++ + + ++ +I +++I T A + LG ++ L ++ Sbjct: 338 SVNEVVKTFVEALLLVIAIVYLFLQNMRATIIPVLAIPVSIIGTFAGMYALGYSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 G+VL IG+ VD I+V E + + K SV + + + + Sbjct: 398 FGLVLAIGIVVDDAIIVIENVERILHSEKEISVKEATIKAMQEVTGPVVAIVLVLCAVFI 457 Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 + F G G + FAIT+ +S++IS A+++ A+ + K+ K Sbjct: 458 PVSFMGGFTGQMYQQFAITIVISVIISGMVALTLTPALCAIFLSKKEPKPFWF------- 510 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 F + W L S+ + + G+ + ++ D Sbjct: 511 --VRKFNEFFDASTNWFTSGVSLVVRHSVISVIVFAVLMGMTYGLFQKVPSSLVPMEDKG 568 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 + + + + + Q +++ + + Sbjct: 569 YLIAVTALPPASSLHRTQAVSAQVSDITNQMPEIAYNISISGFDLLSGAAKTNAATTFLP 628 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAM 680 + K + + + + Sbjct: 629 LKDWSERKAPNQHSEAISGALNGALFGV 656 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 6/147 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 +W L +T + + + L G+ ++ +L LIG S + +++ + M Sbjct: 892 RWLMPLAVVTAVPFAVFGAIMAVYLRGLSNDIYFQIGLLVLIGLSAKNAILIVEFA---M 948 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 + S D ++ V TS+A I VLP+A+ G + + G+ Sbjct: 949 QAQERGKSIFDATLEAARLRFRPIVMTSLAFTIGVLPLALSSGAGAGSRHAIGTGVIGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + A + +IF + AK ++ Sbjct: 1009 IAATTIAIFFIPLFYNALARLNAKFSK 1035 Score = 62.4 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 38/386 (9%), Positives = 113/386 (29%), Gaps = 25/386 (6%) Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496 I + + +R + + V + ++ +I + Sbjct: 90 SINVYFKIGTDPDQATINVNNRVQAALNKLPSEVQAQGVTVTKQSSTILKVISIISPNNS 149 Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556 ++ A + ++ + R + + + + + + Q + + Sbjct: 150 YDEIYMANYALINVIDELKRVEGVGNASLFGNQNYSMRVWMKPDQLAKYNLTPTDVINAI 209 Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE----------------- 599 S + V D + Sbjct: 210 SEQNAQFATGRFNQSPSKTSQAYTFTVTTQGRFDKVEEFEKIILKSNKDGSTLRLKDVAR 269 Query: 600 ---SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 + D++ + +++ + ++ +++++ P + T Sbjct: 270 LELGAESYDVTSTLNGQTMVPIGIYLQSGANALDTAKRVDEAMERLSKSFPENMEYRTPY 329 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715 K + + + + + + + ++ +++ + + + + + I T G Sbjct: 330 DTTKFIQISVNEVVKTFVEALLLVIAIVYLFLQNMRATIIPVLAIPVSIIGTFAGMYALG 389 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG---RS 772 NL + ++ IG V+D ++V + + + + IS ++ K++ E G Sbjct: 390 YSINLLTLFGLVLAIGIVVDDAIIVIENV-ERILHSEKEISVKEATIKAMQEVTGPVVAI 448 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFA 798 V A FI V M + G + FA Sbjct: 449 VLVLCAVFIPVSFMGGFTGQMYQQFA 474 >gi|323972316|gb|EGB67526.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli TA007] Length = 683 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 71/671 (10%), Positives = 173/671 (25%), Gaps = 52/671 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 V + ++ + + + +ITL+F + +V Sbjct: 50 PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + S + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P+ L + T + N G Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + R I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A + + Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + D + + V I+ + + + +G Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + L + ++ + + E F V G +K Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635 Query: 643 TEIVPLSTIQN 653 + ++ Sbjct: 636 DRPGEETKLKR 646 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + DI + + L +++ + K+ P Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + + ++ + I + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 A FG N + ++ IG V+D +VV + + + + ++ KS+ + G Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + + ++ ++ + + Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 >gi|304410276|ref|ZP_07391895.1| protein-export membrane protein SecD [Shewanella baltica OS183] gi|307302013|ref|ZP_07581771.1| protein-export membrane protein SecD [Shewanella baltica BA175] gi|304351685|gb|EFM16084.1| protein-export membrane protein SecD [Shewanella baltica OS183] gi|306914051|gb|EFN44472.1| protein-export membrane protein SecD [Shewanella baltica BA175] Length = 604 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 165/527 (31%), Positives = 274/527 (51%), Gaps = 34/527 (6%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 + ++ P L S+ PS + I LGLDLRGG +L+VD D + Sbjct: 94 TLVSSMVTDPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGE 153 Query: 72 MYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 D LR F++++ I S+ Q N++ L+ D+ + + + Sbjct: 154 ALVDSLRQFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQ------- 206 Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 L T + I LSQ ++ + ++Q+++++R RI+++GI+E+ +QR G HRI Sbjct: 207 ----LSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGDHRIR 262 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 I+LPG QDP+ + ++G TA ++F +V L D G V + Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLNDKSGKPIYVSRTPVLG 317 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306 G H+ A A+ V+I+ D +G ++ E +R NIGKP+A Sbjct: 318 GDHIVDARASLGEMGM-AEVNINLDRVGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAK 376 Query: 307 --------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 Q+ + +I+G T + A LA +LRAGS+ + IVEER +G LG+ Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417 ++I G A+ G+ + +LFM + Y + G VA+ ++ N+++ LL+L+ A LTLP I Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG+VL +G+AVD+N+L+ ERI+++ ++ +S ++D GF A+STIFD+N T +I VVL Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 + G G ++GFA+T+GL +L SMFT I RA++ + + + Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603 Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G + + S + + + ++ L G Q Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I G + + L+++ + ++ Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R++ +K Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID + + I+ + + G I FA+ + G++ + Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + ++ +Y A Sbjct: 581 TGIFASRALINLVYGRDASR 600 >gi|291286174|ref|YP_003502990.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Denitrovibrio acetiphilus DSM 12809] gi|290883334|gb|ADD67034.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Denitrovibrio acetiphilus DSM 12809] Length = 1049 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 78/687 (11%), Positives = 190/687 (27%), Gaps = 51/687 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+ ++++P P +V+ Sbjct: 8 RPVFSWVIAIIIMLAGVFAI-----ETLPIEQYPKIAPP-------------SVVINASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEGIGV----FSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + L S IT++F + +V Sbjct: 50 PGASAETLENSVTQVIEQNLTGIDNMRYFSASSDSSGNMSITVTFEQEADPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +QG+ S L ++N + ++L + + + I +D I Sbjct: 110 KVQGILSSLPQIVQQNGVTVNKSSSGFLLLVGLYSEDGSMNQYDIGDYINSNMVDPISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + +P ++ T + + N G Sbjct: 170 VGVGDVTVFG-QEYSMRIWLNPEKMHSYGVTASDVISAVESQNADIAAGQLGGTPSVKGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++S I + + + + Sbjct: 229 QLNATITAQTKLSSIE-------------EFENILLKVNTDGSKLLLKDVATMELGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + S + + T + L + Sbjct: 276 DIVSRFNGRPASGVAVSLASGANALDTADHVKEKVEELAKYMPDGLKYVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + L+ ++ + ++ T +LS G ++ ++ Sbjct: 336 SIEEVVKTLLEAIVLVFLVMFLFLQNFRATLIPTIAVPVVLLGTFGVLSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475 +VL +GL VD I+V E + + + + + I + + + + Sbjct: 396 FAMVLAVGLLVDDAIVVVENVERLMSEEGLPPKEATKKSMDQITGALIGIALVLSAVFVP 455 Query: 476 VLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FF G R F+IT+ ++ +S+ AI + A+ + Sbjct: 456 MAFFSGSTGVIYRQFSITIVSAMALSVLVAIILTPALCSTLLKPVEKGHQERTKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + N L + RA + + ++ + + +G + L + Sbjct: 516 NRNFNKSRDLYKKSVGYVAARAVRFILLYGVILAAMIFMFTKIPTSFLPDEDQGIMMLML 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + + RSN+E ++ ++ + + F V G +K Sbjct: 576 NSPAGSTMERTRSNMEDVEEYFLTQEKDNIISIFTVTGFSFAGQGQNTGLGFVKLKDWEE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGI 670 P ++Q+ + + + Sbjct: 636 RPNPDQSVQSISSRATQRLWAMKDAMV 662 Score = 79.3 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 79/197 (40%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +E + K + + + +T E+++ + +++ + M +++ Sbjct: 301 DTADHVKEKVEELAKYMPDGLKYVYPYDTTPFVKISIEEVVKTLLEAIVLVFLVMFLFLQ 360 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 + L + + + T G + FG N + A++ +G V+D +VV + + Sbjct: 361 ---NFRATLIPTIAVPVVLLGTFGVLSAFGFSINTLTMFAMVLAVGLLVDDAIVVVENV- 416 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 + + ++ KS+++ G + ++ +PMA + GS F+I + Sbjct: 417 -ERLMSEEGLPPKEATKKSMDQITGALIGIALVLSAVFVPMAFFSGSTGVIYRQFSITIV 475 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ +I + + Sbjct: 476 SAMALSVLVAIILTPAL 492 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 55/408 (13%), Positives = 131/408 (32%), Gaps = 19/408 (4%) Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499 ++ + + S+ SRA ++ + T G GF + + Sbjct: 631 KDWEERPNPDQSVQSISSRATQRLWAMKDAMVFVTYPPAITELGRSSGFNMQILDRGGQG 690 Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559 + + ++ + K+ +I N L + I+ ++ V I Sbjct: 691 HEVLVEAKQELLQKARQNPKLTNIRFNGLEDVPQYKLDLDIEKAKSLGISVADIIQTLGA 750 Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 + + + YG K G R + + + +++ +SF+ F Sbjct: 751 AWGSEYINDFTYGGRIKKVYVQGAAPYRMLPEDINKWYIKNSSGEMVSFEAFSKGYWKYG 810 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI--------- 670 Q + V+ + + ++ + + P +L GI Sbjct: 811 PPQLARFNGVSSMEIQGGPVQGVSSGEAMDIMAQLVEELPGDDIDLAWSGISYEERAAGS 870 Query: 671 -VGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 ++ + +++++ + W I + L I + +F + ++ + Sbjct: 871 QTTLLYALSLLIVFLCLAALYESWSIPFAVILIVPLGIVGAVAATLIFKMSNDVYFQVGL 930 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 LT IG + + +++ + + LY + + L + TSMA + V P+ Sbjct: 931 LTTIGLASKNAILIVEFAK---SLYEKGHGLVASAMMAAQQRLRPIIMTSMAFILGVTPL 987 Query: 787 AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 A G + + I + G+ A +I + I + K Sbjct: 988 ATSSGAGSASQNAIGIGVIGGMFTATFLAILFVPMFFILIENMFGKKK 1035 >gi|288929878|ref|ZP_06423720.1| multidrug efflux RND transporter MexF [Prevotella sp. oral taxon 317 str. F0108] gi|288328697|gb|EFC67286.1| multidrug efflux RND transporter MexF [Prevotella sp. oral taxon 317 str. F0108] Length = 1062 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 69/535 (12%), Positives = 157/535 (29%), Gaps = 40/535 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +++ +I IG+L L + +FPS P ++V D Sbjct: 7 RRPVLAIVVSLVIVFIGILS-----LSNLPITQFPSISPPK-----------VNVV--AD 48 Query: 62 EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 N + + L L G+ + +I + F A V Sbjct: 49 YPGANNELMIKSVLIPLEQALNGVPGMKYIESDAGNDGEGEINIVFKLGTDPNVDAINVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + +KL + + + E+ ++ D ++ Sbjct: 109 NRVSAATNKLPPAVVREGVKISREEPNILMYINLYSDDPKVDQNFLFNYADINISPELAR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + P +L + ++ + G + + Sbjct: 169 VDGVGDLDILGTRSFAMRVWLKPDKLTAYGLSATDITDALQQQSIEASPGKLGESSGKHA 228 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 +Y+++ + + + + ++ V Sbjct: 229 QSFEYVLKYPGRYT-------------TPEEYSNIVVKSTPDGQFIRLKDVADVSLGSEV 275 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 L + I+ A L+ + Sbjct: 276 YDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDMPKGMHYELSYDISRFLD 335 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV V+F+ + + L+ ++ +++I + A+++ G TL + S Sbjct: 336 ASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLIGSFAVMNAFGITLNMIS 395 Query: 417 IAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 + +V+ IG+ VD I+V E + + ++ + I + + Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVKIAKEGLEPLEATQKAMKEISGAIVAVTLVMASVFI 455 Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 + F G G R F+IT+ I++S FTA+++ ++ I+ ++ I Sbjct: 456 PVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCALILTRERDNHIKKTW 510 Score = 95.1 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 92/248 (37%), Gaps = 6/248 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + + L V ++ DI + Q ++ + ++ + + + Sbjct: 259 QFIRLKDVADVSLGSEVYDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDM 318 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDIT 705 P + I K I + + I + + W AL + + + Sbjct: 319 PKGMHYELSYDISRFLDASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLI 378 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 + FGI N+ ++ A++ IG V+D +VV + + N+K+ + + K++ Sbjct: 379 GSFAVMNAFGITLNMISLFALVMAIGIVVDDAIVVIEAV--NVKIAKEGLEPLEATQKAM 436 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 E G V ++ +P+A GG F+I +A GIV++ +++ + + Sbjct: 437 KEISGAIVAVTLVMASVFIPVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCAL 496 Query: 823 IYDWRAKN 830 I N Sbjct: 497 ILTRERDN 504 Score = 51.6 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 10/245 (4%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V + + + + + S A K I E+ Sbjct: 789 NVKNNQGEMVPYADFLHMEKVYGMSEMTRHNLYNSAEVTGSAAAGYSSGQAIKAIEEVAT 848 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRFK---WYFALGAITTLILD 703 + + I+++ + +G +II + +Y+ + + + L IT L Sbjct: 849 STLPHGYDYDFAGITKDEVDQGNQALIIFIVCLTFVYLILSAQYENFLLPLPIITCLPAG 908 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I T F L G+E N+ A A++ LIG + V++ + ++ + S R + Sbjct: 909 ICGTFIFLKLTGLENNIYAQVAMVMLIGLLGKNAVLMVE---YAVQRHNLGKSIRAAAIE 965 Query: 764 SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820 + TS A +LP+ G I + A G++ + + + Sbjct: 966 GAAARFRPILMTSFAFIAGLLPLVFAHGAGAIGNRTIGTAAAGGMLFGTCFGLILVPGLY 1025 Query: 821 LFIYD 825 Sbjct: 1026 YIFGR 1030 >gi|110643511|ref|YP_671241.1| acriflavine resistance protein F [Escherichia coli 536] gi|110345103|gb|ABG71340.1| acriflavine resistance protein F [Escherichia coli 536] Length = 1034 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + +++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVPGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.7 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I++ + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + R+ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|93005936|ref|YP_580373.1| preprotein translocase subunit SecD [Psychrobacter cryohalolentis K5] gi|92393614|gb|ABE74889.1| protein-export membrane protein SecD [Psychrobacter cryohalolentis K5] Length = 625 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 152/527 (28%), Positives = 259/527 (49%), Gaps = 41/527 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDLRGG VLEVD D + L S ++R L+ E I Sbjct: 103 NLAQTTPQWLRDIGAKPMKLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAERI 162 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 V ++ + + L F+D+ + + + + + + + + Sbjct: 163 AVKGIKNDKRSVVLHFSDTDTRNRAQNVLQSSMGNTFAL-------QSSIDEQGPALILA 215 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + +D++ S+A+ Q++ +R RI ++G++E+ +Q G+ RI+++LPG QD + +++L Sbjct: 216 YNDATLDEINSYAVNQNLTTLRNRIAELGVTEALVQSQGASRIVVELPGVQDTAEAKRVL 275 Query: 207 GTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261 G TA + F V DG L+E + ++G + Sbjct: 276 GRTANLEFRMVAEGAENYTGGIPPAGTEAFPFETLDGPPVLLERQAIVTGDKVTN-AQTG 334 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296 ++ P V I+ D G + TR +GK + Sbjct: 335 IDESGSPEVSITLDSAGGKLMQNATRTAVGKQMAVLFIENKQRIAYEEDPVTGETTEVRT 394 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + QA+ +I+G + A LA +LR+G+L + VEER +G L Sbjct: 395 PYAETKVINRANIQAVLGSSFRITGLDSSAEAAELALLLRSGALAAPMYFVEERTIGPSL 454 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 G ++I KG + G +L+ FMI+ Y +G++A+ ++ NVI+ ++++S+LG++LTLP Sbjct: 455 GQENIDKGLFSTQVGYLLVFAFMIIFYRLFGVIANIALAFNVIIIISIMSILGSSLTLPG 514 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 IAGIVL IG+AVD+N+L+ ERIREE ++ GF RAYS+IFD+NIT L+ + Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREEIANGVRPKSAIVAGFDRAYSSIFDANITTLLVAFI 574 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 LF G G ++GFAIT+ + I+ S+FTAI + RA++ +K Sbjct: 575 LFAIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRKSIKR 621 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 76/185 (41%), Gaps = 4/185 (2%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 +GP + +E I KG+ + + + ++ I ++ F + A L ++ + Sbjct: 442 MYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFMIIFYRL-FGVIANIALAFNVIIII 500 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 ++ G L +A ++ IG +V+ V++++R+R+ + + I + Sbjct: 501 SIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREEIANGVR---PKSAIVAGFDRA 557 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 ++ + + G I FAI +A GIV + ++I + ++ Y R Sbjct: 558 YSSIFDANITTLLVAFILFAIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRK 617 Query: 829 KNARI 833 R+ Sbjct: 618 SIKRL 622 >gi|46581220|ref|YP_012028.1| multidrug resistance protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450641|gb|AAS97288.1| multidrug resistance protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234888|gb|ADP87742.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Desulfovibrio vulgaris RCH1] Length = 1070 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 59/556 (10%), Positives = 144/556 (25%), Gaps = 41/556 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + ++P P + + + Sbjct: 8 RPVFAWVIAIIIMLAGALSIL-----SLPVSQYPKIAP-------------TSVNISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117 V + ++ + + Q ITL+F S + +V Sbjct: 50 PGASAKTVEDTVTQVIEQKMKGIDSLRYMSSTSDATGQVSITLTFDASTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L ++ + +++ D + S +D I Sbjct: 110 KLALATPMLPEAVQRQGITVNKSTSSFLMIIALASDDPSLTGRDLSDYAATYLLDPISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L T A + N G Sbjct: 170 DGVGETQLFGAQ-YAMRVWLDPHKLMNYRMTPADVRSAITAQNTQISVGQIGGTPAVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 G + + + + + + E + Sbjct: 229 GMSFTILSQSLL-------------QTREQFERIVLRVEQDGSTVRLADVARVELGSENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T++ L + Sbjct: 276 DAVSHFNGKPSTGIAIKLATGANALDTVKRVRTTMEGLAKNLPEGIRCVFPYDTTPFVRV 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T A LV +V+++ + + ++ ++ + ++ T L+ G ++ + ++ Sbjct: 336 SIEEVVKTLAEAIVLVFLVMYLFLQNIRATIIPTIAVPVVLLGTFGALAAFGFSINMLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + Sbjct: 396 FGVVLAIGLLVDDAIVVVENVERIMTEEGLPPREATRKSMGEITGALVGIALVLSAVFIP 455 Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G + R F++T+ ++ +S+ A+ + A+ ++ + Sbjct: 456 MAFIKGSSGVIYRQFSLTIVSAMTLSVVVALVLTPALCATFLKPLHKHEHQAQGGFFGWF 515 Query: 534 IPDCIAIQFMRARFWG 549 + Sbjct: 516 NRMFDRTSRGYRKQVT 531 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 43/422 (10%), Positives = 121/422 (28%), Gaps = 11/422 (2%) Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464 L + +T I L + D +I + + + ++ + Sbjct: 75 LRYMSSTSDATGQVSITLTFDASTDPDIAQVQVQNKLALATPMLPEAVQRQGITVNKSTS 134 Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 + +A+ G + +A T L + + + + Sbjct: 135 SFLMIIALASDDPSLTG-RDLSDYAATYLLDPISR-VDGVGETQLFGAQYAMRVWLDPHK 192 Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + G + + ++ + Sbjct: 193 LMNYRMTPADVRSAITAQNTQISVGQIGGTPAVPGQGMSFTILSQSLLQTREQFERIVLR 252 Query: 585 ANRP---VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V L+ V + D + +++ + + + Sbjct: 253 VEQDGSTVRLADVARVELGSENYDAVSHFNGKPSTGIAIKLATGANALDTVKRVRTTMEG 312 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700 + + +P R I + + + + + + + +++ + + + Sbjct: 313 LAKNLPEGIRCVFPYDTTPFVRVSIEEVVKTLAEAIVLVFLVMYLFLQNIRATIIPTIAV 372 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + + T G A FG N+ + V+ IG V+D +VV + + + + R+ Sbjct: 373 PVVLLGTFGALAAFGFSINMLTMFGVVLAIGLLVDDAIVVVENV--ERIMTEEGLPPREA 430 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817 KS+ E G V ++ +PMA G + F++ + + ++ ++ + Sbjct: 431 TRKSMGEITGALVGIALVLSAVFIPMAFIKGSSGVIYRQFSLTIVSAMTLSVVVALVLTP 490 Query: 818 PI 819 + Sbjct: 491 AL 492 Score = 63.9 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 79/264 (29%), Gaps = 13/264 (4%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + + V + + + S G + ++G + PG S + Sbjct: 779 MMPEDINAWHVRNAQGNMVPFSAFSTASWTYGSPRLERYNGLPAVELVGSAAPGKSTGEA 838 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + + + +++ + + + W Sbjct: 839 MQAVEDMAAKLPPGVGISWTGLSYQERMSGSQAPALYAISILVVFLCLA---ALYESWSV 895 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVA--AVLTLIGYSVNDKVVVYDRMRKNMKL 750 I L++ + A G N +LT IG + + +++ + M L Sbjct: 896 PTAVI--LVVPLGIIGALMATLGRGLNNDVFFQVGLLTTIGLAAKNAILIVEFA---MHL 950 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807 + D ++ L + TS+A + VLPMA+ G + + G+ Sbjct: 951 VKSGRPLLDATAEAARLRLRPILMTSLAFLLGVLPMAISTGAGSGSQRAIGTGVMGGMFS 1010 Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831 A +++ + +Y + + Sbjct: 1011 ATVLAVYFVPVFFVMVYRFAMRKR 1034 >gi|256375831|ref|YP_003099491.1| protein-export membrane protein SecF [Actinosynnema mirum DSM 43827] gi|255920134|gb|ACU35645.1| protein-export membrane protein SecF [Actinosynnema mirum DSM 43827] Length = 396 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 141/323 (43%), Gaps = 11/323 (3%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 M S L A + R GI + S+ L+ G N GIDF GG Sbjct: 1 MSSTPRKASVFQRLYVGNGAFDIVGKRTRWYGIFGAILVASVLLVIFKGFNLGIDFTGGT 60 Query: 580 QLGVLANR----PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635 ++ + A + V+ + + D + G + + Q L Sbjct: 61 RIQMPAQTGEGTSISQEAVQDSFKKSVGEDATSVQTVGTGDAATFQIRSETLTTQQIDGL 120 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 + + + + V E+ K ++ ++I +A+++++ + F+ A+G Sbjct: 121 KNTLNDDLKPEGGLSSVSDSAVSASWGGEITTKALLALLIFFVAVMLFLALYFELAMAVG 180 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTT 753 A+ ++ D+ T G ++L G E + + +LT++G+S+ D VVV+D++R+N + L T Sbjct: 181 ALVAVVHDVVITAGVYSLVGFEVSPATIIGLLTILGFSLYDTVVVFDKVRENTRGILGLT 240 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVA 808 ++ + + ++N+TL RS+ TS+ A + V+ + + G + A+ G+ + Sbjct: 241 RRTYGEATNLAVNQTLMRSINTSLIALLPVMGLLVVGVWLLGVGTLKDLALVQLAGMAIG 300 Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831 A SSIFIA I + + + Sbjct: 301 ALSSIFIAPAIAVDLKMRDPRYK 323 >gi|91212697|ref|YP_542683.1| acriflavine resistance protein F [Escherichia coli UTI89] gi|117625556|ref|YP_858879.1| acriflavine resistance protein F [Escherichia coli APEC O1] gi|218560335|ref|YP_002393248.1| multidrug efflux system protein [Escherichia coli S88] gi|227887992|ref|ZP_04005797.1| acriflavine resistance protein F [Escherichia coli 83972] gi|237705975|ref|ZP_04536456.1| acriflavine resistance protein F [Escherichia sp. 3_2_53FAA] gi|300991064|ref|ZP_07179485.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 45-1] gi|331659555|ref|ZP_08360497.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli TA206] gi|91074271|gb|ABE09152.1| acriflavine resistance protein F [Escherichia coli UTI89] gi|115514680|gb|ABJ02755.1| acriflavine resistance protein F [Escherichia coli APEC O1] gi|218367104|emb|CAR04877.1| multidrug efflux system protein [Escherichia coli S88] gi|226899015|gb|EEH85274.1| acriflavine resistance protein F [Escherichia sp. 3_2_53FAA] gi|227835388|gb|EEJ45854.1| acriflavine resistance protein F [Escherichia coli 83972] gi|294492840|gb|ADE91596.1| acriflavine resistance protein F [Escherichia coli IHE3034] gi|300406985|gb|EFJ90523.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 45-1] gi|307555360|gb|ADN48135.1| acriflavine resistance protein F [Escherichia coli ABU 83972] gi|307625134|gb|ADN69438.1| multidrug efflux system protein [Escherichia coli UM146] gi|315289027|gb|EFU48425.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 110-3] gi|315294817|gb|EFU54160.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 153-1] gi|323957586|gb|EGB53300.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H263] gi|331054137|gb|EGI26166.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli TA206] Length = 1034 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.3 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I++ + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + R+ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|118602968|ref|YP_904183.1| protein-export membrane protein SecD [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567907|gb|ABL02712.1| protein-export membrane protein SecD [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 615 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 174/519 (33%), Positives = 289/519 (55%), Gaps = 36/519 (6%) Query: 32 LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91 + + + + +SLGLDLRGG + +LEVD + ++ + +ELR L+K+ + S+ Sbjct: 108 VPVWLTILGGKAMSLGLDLRGGVYFLLEVDMETVISALMNKVYNELRVLLRKDRL-YKSI 166 Query: 92 RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151 +Q I + F + K+ A + L L L + E ++I +S++ Sbjct: 167 KQENGSIVIRFKHAELKDKAAQLIKLEL---------GDLVMLDNNSDELSLNIGISESA 217 Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211 Q A++Q++ +R R++++G++E IQ S RI++QLPG QD +R +++LGT A Sbjct: 218 QRQAKKSALKQNITTLRNRVNELGVTEPIIQ-QSSERIMVQLPGVQDTARAKEILGTVAT 276 Query: 212 MSFHKVLPNN------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 + F V N G + DG+ L++D+V +G ++ GA ++ D + Sbjct: 277 LEFRLVDEKNDPQIAIQSGRVPIGSKLYYFKDGSPLLLKDRVITTGENITGAASSIDQEN 336 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLTAP 306 + P+V+I+ D +G R T+ + + R + Sbjct: 337 NIPMVNITLDSIGGRAMLNTTKKYLHHRMAVVFIENKVETIIKNGKTIKKHTTTRDIINA 396 Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366 Q+ S + QI+G + A LA +LRAGSL + I+EER +G LG+D+I KG Sbjct: 397 ATIQSAFSSRFQITGIDSAREARNLALLLRAGSLSAPIEIIEERTIGPSLGADNITKGMT 456 Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 +++ G VL++LFM + Y +G+VA+ ++ N+++ +++LSLL ATLTLP IAGIVL +G+ Sbjct: 457 SVLVGFVLVLLFMAIRYRIFGIVANVALTFNLVMIVSVLSLLQATLTLPGIAGIVLTVGM 516 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 AVD+N+L+ ERI+EE N + ++ G+ +A TI D+NIT LIA +VLF FG G ++ Sbjct: 517 AVDANVLIFERIKEELCVNSKIQKAISNGYDKALLTIADANITTLIAALVLFSFGTGPIK 576 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 GFAIT+ + I+ SMFTAI + RA++ I KK++ I I Sbjct: 577 GFAITLSIGIVTSMFTAIIVSRAIINKIYGGKKLEEISI 615 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 103/261 (39%), Gaps = 4/261 (1%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 LN + V V+ + N ++ G Sbjct: 353 MLNTTKKYLHHRMAVVFIENKVETIIKNGKTIKKHTTTRDIINAATIQSAFSSRFQITGI 412 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A+ + + + I +GP + + I KG+ V++ + +L+++ IR Sbjct: 413 DSAREARNLALLLRAGSLSAPIEIIEERTIGPSLGADNITKGMTSVLVGFVLVLLFMAIR 472 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 ++ F + A L ++ + +L L +A ++ +G +V+ V++++R+++ Sbjct: 473 YRI-FGIVANVALTFNLVMIVSVLSLLQATLTLPGIAGIVLTVGMAVDANVLIFERIKEE 531 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + + + + I ++ L ++ I+ L + +G I FAI ++ GIV Sbjct: 532 LCVNSK---IQKAISNGYDKALLTIADANITTLIAALVLFSFGTGPIKGFAITLSIGIVT 588 Query: 808 AASSSIFIAAPILLFIYDWRA 828 + ++I ++ I+ IY + Sbjct: 589 SMFTAIIVSRAIINKIYGGKK 609 Score = 40.4 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 26/117 (22%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + L + + +L ALPN GS L ++V Sbjct: 4 YSRLKNALIIFVLLLSMLYALPNIF-------------------------GSDLAVQVSS 38 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 + +++++ LK + I S+ +I + F D+ + D + L Sbjct: 39 VG-NTLIVDQDLNKIKNVLKAQQIEFKSVELTNQRILVRFKDNTQQLLAKDVLKQAL 94 >gi|191173830|ref|ZP_03035351.1| acriflavine resistance protein F [Escherichia coli F11] gi|300979708|ref|ZP_07174658.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 200-1] gi|190905880|gb|EDV65498.1| acriflavine resistance protein F [Escherichia coli F11] gi|300307926|gb|EFJ62446.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 200-1] gi|324015875|gb|EGB85094.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 60-1] Length = 1034 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.3 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I++ + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + R+ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|120601548|ref|YP_965948.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Desulfovibrio vulgaris DP4] gi|120561777|gb|ABM27521.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Desulfovibrio vulgaris DP4] Length = 1070 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 59/556 (10%), Positives = 144/556 (25%), Gaps = 41/556 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + ++P P + + + Sbjct: 8 RPVFAWVIAIIIMLAGALSIL-----SLPVSQYPKIAP-------------TSVNISASY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117 V + ++ + + Q ITL+F S + +V Sbjct: 50 PGASAKTVEDTVTQVIEQKMKGIDSLRYMSSTSDATGQVSITLTFDASTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L ++ + +++ D + S +D I Sbjct: 110 KLALATPMLPEAVQRQGITVNKSTSSFLMIIALASDDPSLTGRDLSDYAATYLLDPISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L T A + N G Sbjct: 170 DGVGETQLFGAQ-YAMRVWLDPHKLMNYRMTPADVRSAITAQNTQISVGQIGGTPAVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 G + + + + + + E + Sbjct: 229 GMSFTILSQSLL-------------QTREQFERIVLRVEQDGSTVRLADVARVELGSENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T++ L + Sbjct: 276 DAVSHFNGKPSTGIAIKLATGANALDTVKRVRTTMEGLAKNLPEGIRCVFPYDTTPFVRV 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T A LV +V+++ + + ++ ++ + ++ T L+ G ++ + ++ Sbjct: 336 SIEEVVKTLAEAIVLVFLVMYLFLQNIRATIIPTIAVPVVLLGTFGALAAFGFSINMLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + Sbjct: 396 FGVVLAIGLLVDDAIVVVENVERIMSEEGLPPREATRKSMGEITGALVGIALVLSAVFIP 455 Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G + R F++T+ ++ +S+ A+ + A+ ++ + Sbjct: 456 MAFIKGSSGVIYRQFSLTIVSAMTLSVVVALVLTPALCATFLKPLHKHEHQAQGGFFGWF 515 Query: 534 IPDCIAIQFMRARFWG 549 + Sbjct: 516 NRMFDRTSRGYRKQVT 531 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 43/422 (10%), Positives = 121/422 (28%), Gaps = 11/422 (2%) Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464 L + +T I L + D +I + + + ++ + Sbjct: 75 LRYMSSTSDATGQVSITLTFDASTDPDIAQVQVQNKLALATPMLPEAVQRQGITVNKSTS 134 Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 + +A+ G + +A T L + + + + Sbjct: 135 SFLMIIALASDDPSLTG-RDLSDYAATYLLDPISR-VDGVGETQLFGAQYAMRVWLDPHK 192 Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + G + + ++ + Sbjct: 193 LMNYRMTPADVRSAITAQNTQISVGQIGGTPAVPGQGMSFTILSQSLLQTREQFERIVLR 252 Query: 585 ANRP---VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + V L+ V + D + +++ + + + Sbjct: 253 VEQDGSTVRLADVARVELGSENYDAVSHFNGKPSTGIAIKLATGANALDTVKRVRTTMEG 312 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700 + + +P R I + + + + + + + +++ + + + Sbjct: 313 LAKNLPEGIRCVFPYDTTPFVRVSIEEVVKTLAEAIVLVFLVMYLFLQNIRATIIPTIAV 372 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760 + + T G A FG N+ + V+ IG V+D +VV + + + + R+ Sbjct: 373 PVVLLGTFGALAAFGFSINMLTMFGVVLAIGLLVDDAIVVVENV--ERIMSEEGLPPREA 430 Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817 KS+ E G V ++ +PMA G + F++ + + ++ ++ + Sbjct: 431 TRKSMGEITGALVGIALVLSAVFIPMAFIKGSSGVIYRQFSLTIVSAMTLSVVVALVLTP 490 Query: 818 PI 819 + Sbjct: 491 AL 492 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 69/202 (34%), Gaps = 10/202 (4%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKWYFAL 694 E ++ L G + + IS + + + + ++ + Sbjct: 837 EAMQAVEDMAAKLPPGVGISWTGLSYQERMSGSQAPALYAISILVVFLCLAALYESWSVP 896 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVA--AVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 A+ L++ + A G N +LT IG + + +++ + M L Sbjct: 897 TAVI-LVVPLGIIGALMATLGRGLNNDVFFQVGLLTTIGLAAKNAILIVEFA---MHLVK 952 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809 + D ++ L + TS+A + VLPMA+ G + + G+ A Sbjct: 953 SGRPLLDATAEAARLRLRPILMTSLAFLLGVLPMAISTGAGSGSQRAIGTGVMGGMFSAT 1012 Query: 810 SSSIFIAAPILLFIYDWRAKNA 831 +++ + +Y + + Sbjct: 1013 VLAVYFVPVFFVMVYRFAMRKR 1034 >gi|308233818|ref|ZP_07664555.1| protein-export membrane protein SecF [Atopobium vaginae DSM 15829] gi|328944554|ref|ZP_08242015.1| protein-export membrane protein SecF [Atopobium vaginae DSM 15829] gi|327490955|gb|EGF22733.1| protein-export membrane protein SecF [Atopobium vaginae DSM 15829] Length = 324 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 134/304 (44%), Gaps = 5/304 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 I F+ R + IS + + ++ L GL +GI+F+GG + + + Sbjct: 1 MRSHFRKEISFIPHRRVFLSISSVLVVLAVVGLVLKGLVFGIEFQGGTTIDFHDTGSITI 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + +R L D Q + ++ + K + Sbjct: 61 AAMRDALLQAGENDPVVQTSVSDAAQGFLVRSDTTNPEVANAHAAAAAKSLGLADDSY-- 118 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 +GP +++ R I+ + +++Y+ IR+++ ++ A+ LI D+ TLG + Sbjct: 119 -TVTTIGPDWGQDITRASAFAFCIAIVLIIVYVSIRYEFKMSITAVIALIHDLVITLGIY 177 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINETL 769 A VAA+LT++GYS+ D VV ++RM +N K ++ ++ + SINE Sbjct: 178 AWTQTPITPNVVAALLTIMGYSLYDTVVEFNRMDENAKHLHDGIHHTYYEICNFSINEVF 237 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R++ T++ + + V M V GG + FA+ M G ++ SS +A+P+L + Sbjct: 238 VRTINTTITSVVPVAIMLVLGGQTLKDFALAMLIGEILGTWSSFGVASPLLAIWKTREKR 297 Query: 830 NARI 833 ARI Sbjct: 298 WARI 301 >gi|54295024|ref|YP_127439.1| hypothetical protein lpl2104 [Legionella pneumophila str. Lens] gi|53754856|emb|CAH16344.1| hypothetical protein lpl2104 [Legionella pneumophila str. Lens] Length = 1052 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 70/582 (12%), Positives = 169/582 (29%), Gaps = 40/582 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G+L ++++P +P + ++ Sbjct: 10 RPVFATVISIIIVMVGVLS-----YFNLPIEQYPQVVPPT-------------IQVQASY 51 Query: 63 DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + + + + + E + + + ++T++F + V Sbjct: 52 PGANAKTVAETVATPIEQEVNGVENMLYMDSQSTDDGQMRLTITFKLGTDLDQAQVLVQN 111 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + V KL + ++ + T +++ I D+I Sbjct: 112 RVAVVEPKLPEEVRRLGITTNKNSPDLMLVVNLYSPNGQYDQTYIGNYAILHIRDKIRRI 171 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E L + +P + T + N ++ ++ Sbjct: 172 EGVGNVLVFGASEYAMRLWLNPDLMNTFNLTANDVLAAVRAQNVQVASGKLNLQPQKNQY 231 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 G +Y +E K + K + I G R + Sbjct: 232 GFEYHIETKGRL-------------VKKEEFENIIVKSGEGGRIVRLKDIGRVELGTQNY 278 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T + + P + Sbjct: 279 LTKGYLDKYPAVALPIYQRPGTNALATAQEIIKTMKTIAKDFPPGITYDIAYNPTLFVQQ 338 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+ + + + + +I +++I T A++ +G +L ++ Sbjct: 339 SIDAVFHTIYEAIALVVLVILIFLQTWRASAIPVVAIPVSLIGTFAVMQAIGFSLNYLTL 398 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ VD I+V E + + + + + S + + + + Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERNIQAGMNPRDAARKTMTEVGSALVAMGLVLIAVFLPT 458 Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 F G + F T+ ++ IS+F ++++ M + + ++I L+ + Sbjct: 459 VFLEGISGRFYQQFGTTLAVATAISVFVSLTLTPTMAVLL-LRAHHETIKQEGLAWWRKP 517 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576 F R + YGI Sbjct: 518 IYGFLHGFNRLMEGFSRQYGKLVATLTRKTALMTIAYGIFIS 559 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 46/446 (10%), Positives = 129/446 (28%), Gaps = 19/446 (4%) Query: 402 LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461 + + + T++ +G + +E R + + + S Sbjct: 607 ILAIPGIAHTVSFTGFSGATFTNSSNAGAIFTPLLSFQERQRMGINYND-ILKRLRQELS 665 Query: 462 TIFDSNITAL-------IATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMM 511 TI ++ I + I F G + + + +M A + ++ Sbjct: 666 TIKEALIVVIPPPPVRGIGNAGGFKMMLQDRGGRGLDVLMEAAATMVNAANQEKATTSVF 725 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571 F + ++ L + + G F+ + Sbjct: 726 TFFENSTPRLHLKLDREKVERLNVPYANVVEALEVYLGSVFINEFNYLGRTFRVIAQADS 785 Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 L + V ++ ++ + + LQ + Sbjct: 786 EYRHTEDDILRIKVKSNNGDMVPIGSVAQIENTVAPSRMPRFNLYPAIDLQGDVAPGYSS 845 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690 L ++K +P + + + ++ + I + + + +++ W Sbjct: 846 DEALVTMEKLAQNNLPDGIGYEWTEI-AYQQKMVGNTALMAFTLGVIFIFLVLAAQYESW 904 Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 L I + + + ++ + G+E N+ L LIG + + +++ + R +L Sbjct: 905 SLPLAVILIVPMCLFSSMLGVKILGMENNIMTQIGFLVLIGLASKNAILIVEFAR---QL 961 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807 + ++ L + TS A + V P+ + G + + + + G++ Sbjct: 962 ENRGYNLWKAAIQAAKLRLRPILMTSFAFILGVFPLIISTGAGAEMRRALGVAVFSGMLG 1021 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + + I ++ Sbjct: 1022 VTFFGLIFTPLFYVLISRLSRYKRKL 1047 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 69/203 (33%), Gaps = 9/203 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + + ++ + K + N + + + + + + +LI++ Sbjct: 304 ATAQEIIKTMKTIAKDFPPGITYDIAYNPTLFVQQSIDAVFHTIYEAIALVVLVILIFLQ 363 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W + + + + + T G N + ++ IG V+D +VV + M Sbjct: 364 ---TWRASAIPVVAIPVSLIGTFAVMQAIGFSLNYLTLFGLVLAIGIVVDDAIVVVENME 420 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802 +N++ ++ RD K++ E V + LP G F +A Sbjct: 421 RNIQA---GMNPRDAARKTMTEVGSALVAMGLVLIAVFLPTVFLEGISGRFYQQFGTTLA 477 Query: 803 FGIVVAASSSIFIAAPILLFIYD 825 ++ S+ + + + + Sbjct: 478 VATAISVFVSLTLTPTMAVLLLR 500 >gi|242279109|ref|YP_002991238.1| protein-export membrane protein SecF [Desulfovibrio salexigens DSM 2638] gi|242122003|gb|ACS79699.1| protein-export membrane protein SecF [Desulfovibrio salexigens DSM 2638] Length = 357 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 102/341 (29%), Positives = 160/341 (46%), Gaps = 49/341 (14%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVD 590 +I I F+ + IS + + I L +G YGIDF GGI + V ++ V+ Sbjct: 4 QIIKPDTKIDFIGFKAKAFIISAVLILLGIGSLIMNGGPKYGIDFAGGIVVQVKFDKKVE 63 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLS 649 + V+ L+ ++ + Q+F + + + L+ D + ++ + Sbjct: 64 VKAVKGALKEAKLPGLVVQSFGHDDDNEILLRTSSSDISSSEVRDKISSGLESGMGGTGF 123 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-------------------- 689 IQ E+VGPK+ +L K I + + + + IYI RF+ Sbjct: 124 EIQRLEMVGPKVGADLRTKAIEALYFAVLLIAIYISGRFEQRWFAAAIMAGGLFGGITLL 183 Query: 690 --------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723 +ALGAI LI DI T+G F+L G EF+LT + Sbjct: 184 QMLGMSTTVLIFGALFITIGLCWYLKLNYALGAIVALIHDIMITVGIFSLLGKEFDLTII 243 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 AA+LT+IGYS+ND ++V+DR+R+N+ L S D I+ SIN+TL R++ TS + V Sbjct: 244 AALLTIIGYSLNDTIIVFDRIRENL-LGKVSDCLADTINISINQTLSRTILTSGTTLLVV 302 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 + GG VI FA+ + G+ V SSIF+A+PILL Sbjct: 303 AALFALGGGVIHDFALALLIGVGVGTYSSIFVASPILLGFG 343 >gi|330819604|ref|YP_004348466.1| hydrophobe/amphiphile efflux-1 family protein [Burkholderia gladioli BSR3] gi|327371599|gb|AEA62954.1| hydrophobe/amphiphile efflux-1 family protein [Burkholderia gladioli BSR3] Length = 1061 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 74/574 (12%), Positives = 160/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ +G+ + ++P+ P + + + Sbjct: 8 RPIFAWVIAIVLMLVGIASIF-----TLPISQYPTIAPPA-------------VQITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S IT+SFA + +V Sbjct: 50 PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITISFAPGTNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L ++ L T ++ N + + + + +D I Sbjct: 110 KLSLATPILPQVVQQLGLKVTKSSSSYLLWIAFNSEDGSMGRNDLTNYVASHVLDPISRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q L + DP++L T A +S N G G + Sbjct: 170 NGVGQTLLLGSQ-YAMRIWLDPNKLNNFSLTPADVSNAISAQNVQIAGGQIGGTPAKAGT 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + ++ + + + + IG Sbjct: 229 VLQATITEQTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + L + Sbjct: 276 NFDTKYMGQPTAGLGIQLATGANALATADAIKAKVKELSKYFPHGMVVHYPYDTTPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A++ L G T+ S+ Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMGLAGFTINTLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + S + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMVEEGLPPKEATKKAMGQITSALVGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F++T+ ++++S+ A+ + A+ I +K I+ Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIEKGHHEEKKG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F + R S L + Sbjct: 511 FFGWFNRNFDKGREKYHVGVHHVIKRSGRWLVIY 544 Score = 79.3 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + L +++A ++ K++++ Sbjct: 258 SQVRLKDVAQIGLGAENYNFDTKYMGQPTAGLGIQLATGANALATADAIKAKVKELSKYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + + R I + + ++ + + + +++ + L + + + Sbjct: 318 PHGMVVHYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T L G N ++ ++ IG V+D +VV + + + + ++ K++ Sbjct: 378 GTFAIMGLAGFTINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATKKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + V ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 GQITSALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492 Score = 71.6 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 76/216 (35%), Gaps = 8/216 (3%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + ++G ++ Q G+S Q + + + Sbjct: 816 ERYNGISAVEIQGQASTGNSTGQAMAAMQRLAAQLPTGIGYSWTGLSFQEIQSGSQAPIL 875 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + +++ + + + W I + L + L L G+E ++ +LT Sbjct: 876 YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLASTLRGLENDVFFQVGLLT 932 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 +G S + +++ + R+ + + ++ L + TS+A + VLP+A+ Sbjct: 933 TVGLSAKNAILIVEFARE--LQVGEKMGPVEAALEAARLRLRPILMTSLAFILGVLPLAI 990 Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 G + + + G++ A +IF+ + Sbjct: 991 SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFV 1026 Score = 45.5 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 59/529 (11%), Positives = 141/529 (26%), Gaps = 58/529 (10%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WLVI ++I +G L + P +G ++++ Sbjct: 536 RSGRWLVIYLAVIVGVGFLFV------RLPKSFLPDED-----------QGYMFMIVQ-T 577 Query: 62 EDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQIQ----------NKITLSFADSRFKE 109 ++ ++ +++ + + + + Sbjct: 578 PSGSTQETTARTLADITDYMAKEEKNVVDSVFTVNGFSFAGRGQNAGLVFVKLRPFEERR 637 Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169 KV ++ K +++ I + + D ++ + + Sbjct: 638 AADRKVQALIKRTFGHY-AGYKDGIVIPFNPPSIPELGTAAGFDFELTDNGGLGHDALMA 696 Query: 170 RIDQI---GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226 +Q+ + T+ + + + + D R + ++ + S Sbjct: 697 ARNQLLGMAAKDPTLALVRPNGLNDTPQYKVDIDREKANALG---VTAAAIDQTFSIAWA 753 Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286 V D+DG V + + + + I + A + Sbjct: 754 SQYVNNFLDTDGRIKKVYVQAD------------SPFRVTPEDLGIWYVRNNAGGMVPFS 801 Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346 G + + Q S + A L A Sbjct: 802 AFATGHWTYGSPKLERYNGISAVEI----QGQASTGNSTGQAMAAMQRLAAQLPTGIGYS 857 Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406 + S AI +V + L + + L VI L + Sbjct: 858 WTGLSFQEIQSG-SQAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAST 916 Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFD 465 L G + G++ +GL+ + IL+ E RE + + + I Sbjct: 917 LRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQVGEKMGPVEAALEAARLRLRPILM 976 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511 +++ ++ + L G + + +L + F AI ++ Sbjct: 977 TSLAFILGVLPLAISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFF 1025 >gi|86740080|ref|YP_480480.1| preprotein translocase subunit SecF [Frankia sp. CcI3] gi|86566942|gb|ABD10751.1| protein translocase subunit secF [Frankia sp. CcI3] Length = 398 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 9/295 (3%) Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + F+ R +S + I + G +GI+F GG + + ++ V Sbjct: 12 FNVDFVGRRKAWYAVSGVVVAVCIISMIFRGFTFGIEFSGGAVFQLPSGGGT-VAQVEDT 70 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L + + E + R+Q + + K+ + P V Sbjct: 71 LSGIGLDPADSVVQQLETSHQFRIQTPTLSDAQTRELTGALAKRFSVSNPD-RDIAVSTV 129 Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 G + K + G+ + + ++IY+ +RF+W AL A+ L+ D+ T+G ++L G E Sbjct: 130 GSSWGSTITNKALQGLAVFLVLVVIYLSVRFEWRMALAAMAALVHDLVVTMGVYSLVGFE 189 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYT 775 + V AVLT++G+S+ D VVV+DR+R+N T ++ + + ++NETL RS+ T Sbjct: 190 VTPSTVIAVLTILGFSLYDTVVVFDRVRENTAGMGTSTRRTYAEATNDALNETLVRSLNT 249 Query: 776 SMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 S+ A I V + G + A+ GI SS+F A P+L+ + Sbjct: 250 SLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPLLVDLKR 304 >gi|220910339|ref|YP_002485650.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Cyanothece sp. PCC 7425] gi|219866950|gb|ACL47289.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Cyanothece sp. PCC 7425] Length = 1043 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 77/614 (12%), Positives = 168/614 (27%), Gaps = 38/614 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + + +I +GL+ LP ++ +P P G Sbjct: 8 RRPVFATVCSLLIILVGLVS-----LPTLAIEYYPDVSPPTI---------GVTANYPGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + ++ + + IT++F K A V + Sbjct: 54 SAETVETNVTTILEQQINGVEGMKYISSTSDSNGGSNITVTFDQGYDKNVAAVDVQNRIA 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 V S+L + + + + + S +D + Sbjct: 114 VVQSQLPQQVIQTGVSVSKASTQIVNVFGLYSPDDRYDPAFISNYASLYIVDPLKRIPGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP+RL T +S N + G Q Sbjct: 174 GSVQIFGERTYAMRLWLDPNRLASRGLTAMDVSDALREQNIQVGAGVIGAPPAPRGQEFQ 233 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 ++ ++ + + Sbjct: 234 IGIQAISRLA-------------TAEEFGDIVIQTGADGSLVRVRDVGRTELGAQDYSSN 280 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + L L+ P + A + Sbjct: 281 TRFNGKNAVGLGIYQLTGANALDVASRTEALMEELKQKFPPGLDYELAFDTTEAVREAVW 340 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T A LV++V+F+ + + L+ +I ++++ T A + G ++ ++ G+ Sbjct: 341 EVANTLAESVFLVVVVIFVFLQGWRTTLIPAMTIPVSLLGTFAFIKAFGFSINSLTLFGL 400 Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLF 478 VL GL VD I+V E I + S + I S + + V+F Sbjct: 401 VLATGLVVDDAIVVIENITRLMEERGLSPREAAFESMREVTGAVIATSLVLMAVFIPVVF 460 Query: 479 FFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSR 530 F G + FA+T+ S+ +S F A+++ A+ ++ + ++ Sbjct: 461 FPGVTGRLYQQFALTIVFSVALSTFNALTLTPALCALLLGRPQATQNWFFRRVNWGINKT 520 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + + +L + + G + +G + A + V Sbjct: 521 RRGYERSLIWITRFKGAVLIAFFLLIGVTYWLFITVPGGFVPEEDQGYFVTIIQAPQGVS 580 Query: 591 LSVVRSNLESLQIG 604 L + + Sbjct: 581 LEYTDKIVSQVDQE 594 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 5/140 (3%) Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 W L T+ + + T F FG N + ++ G V+D +VV + + Sbjct: 364 WRTTLIPAMTIPVSLLGTFAFIKAFGFSINSLTLFGLVLATGLVVDDAIVVIENI--TRL 421 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806 + +S R+ +S+ E G + TS+ +P+ + G FA+ + F + Sbjct: 422 MEERGLSPREAAFESMREVTGAVIATSLVLMAVFIPVVFFPGVTGRLYQQFALTIVFSVA 481 Query: 807 VAASSSIFIAAPILLFIYDW 826 ++ +++ + + + Sbjct: 482 LSTFNALTLTPALCALLLGR 501 Score = 65.1 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 78/246 (31%), Gaps = 9/246 (3%) Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 L +L + L R G+ +++++ Sbjct: 783 SEDDRMIPLSNLIKITQTVAPQSITHYNLFRSANITGNGSPGMSSGQVIQQMENLARQTL 842 Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706 EL G +I + +++ + + L I ++ L I Sbjct: 843 PQGIGYTWTGLSLEELKSGGQAPLIFGLGLVFVFLVLAAQYESYIDPLIIILSVPLAILG 902 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 L L G+ ++ ++ LIG + + +++ + + +S + Sbjct: 903 ALAAQGLRGLNNDVFCQIGLVMLIGLASKNAILIVEFAN---QKKAEGLSNTKAAIAASE 959 Query: 767 ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 E L + T+++ LP+ G + S + G++ + S+FI + I Sbjct: 960 ERLRPILMTALSFIFGTLPLVFATGSGAAARQSLGTAVYGGMISSTFLSLFIVPVFFIVI 1019 Query: 824 YDWRAK 829 + R + Sbjct: 1020 NNIRDR 1025 >gi|606207|gb|AAA58070.1| alternate name envD, has different start annotated [Escherichia coli str. K-12 substr. MG1655] Length = 1034 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V ++ V + +E +G+ + + Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291 Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T + ++ ++ P + I + + + + + + Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + + ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQXPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|73667497|ref|YP_303513.1| preprotein translocase subunit SecD [Ehrlichia canis str. Jake] gi|72394638|gb|AAZ68915.1| SecD/SecF/SecDF export membrane protein [Ehrlichia canis str. Jake] Length = 508 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 175/518 (33%), Positives = 297/518 (57%), Gaps = 23/518 (4%) Query: 7 LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66 I+ S++C + + + LPNF+ L + K +++LGLDL+GG +L+LE D +++ Sbjct: 11 KPIIVSLLCILAIYLILPNFIDSKFL------LSKQKVNLGLDLQGGVYLLLEADFKEYL 64 Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126 + DEL FL + I Q+K+ L+ D + + + ++ Sbjct: 65 KERMYALYDELNEFLLSKKIEYSRFDVEQDKLVLTLKDGKSFDKVKLFGNKNVR------ 118 Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186 ++ E + I + +++ + I ++ IR+R+D+ G E I G Sbjct: 119 ---------ISEREGCVEISFYDSYKSELLRNVISDAISNIRRRLDKSGTKEIIINSHGK 169 Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYLVED 245 RI +Q+PG D S+++ LLG TAK++FH + L+D+ GN Y + Sbjct: 170 DRISLQVPGVHDTSQIKTLLGKTAKLTFHLLEDVKQLSSINSLTTVLLKDNRGNTYPILK 229 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305 KVEISG L ++ +V + A++F ++T++N KP A+VLDG VLTA Sbjct: 230 KVEISGDSLID-VSSGINSLGNVIVHFKLNNEAAKKFAKITKENFNKPFAIVLDGVVLTA 288 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 P+I + I +G +ISGNFT+ETA L+ +L++G+LP+ L ++EE+ +G+ LG++ I +G Sbjct: 289 PIIREPILTGSGEISGNFTVETAKELSILLKSGALPVPLKVIEEKTIGSSLGAEYIKQGR 348 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 A++ ++ + +F+I Y +G++A + N+I +A+L+LL ATLTLP +AGI L +G Sbjct: 349 LAMIISVIAVSVFIIFSYRMFGVLAVVGLVFNIIFIVAVLTLLQATLTLPGLAGITLTVG 408 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 ++VD+N+L+ ERIREE + + +++ GF A STIFDSNIT LI V+F G G + Sbjct: 409 MSVDANVLIFERIREELNSTKKLRWAVESGFKNAMSTIFDSNITTLIVAAVMFVIGSGPI 468 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 GFAIT+ + IL SMF+AI++ + ++ I+ +K++ Sbjct: 469 SGFAITLSIGILCSMFSAITLTKMLIDLYIKLFNLKTL 506 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 79/171 (46%), Gaps = 5/171 (2%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 +G + E I++G + +IIS IA+ ++I ++ F + A+ L+ +I + L Sbjct: 334 TIGSSLGAEYIKQGRLAMIISVIAVSVFIIFSYRM-FGVLAVVGLVFNIIFIVAVLTLLQ 392 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A + +G SV+ V++++R+R+ + R ++ + + Sbjct: 393 ATLTLPGLAGITLTVGMSVDANVLIFERIREELNSTKK---LRWAVESGFKNAMSTIFDS 449 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 ++ I M V G I FAI ++ GI+ + S+I +L+ +Y Sbjct: 450 NITTLIVAAVMFVIGSGPISGFAITLSIGILCSMFSAI-TLTKMLIDLYIK 499 >gi|197337448|ref|YP_002158791.1| OqxB [Vibrio fischeri MJ11] gi|197314700|gb|ACH64149.1| OqxB [Vibrio fischeri MJ11] Length = 1050 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 78/694 (11%), Positives = 188/694 (27%), Gaps = 48/694 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + + +P P + + Sbjct: 8 QRPKFALVISIILTLAGAIALAV-----LPVAEYPKISPP-------------SVSVSAY 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 ++ D + + + E + S + + + ++F + V Sbjct: 50 YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + SKL + + + +++ + DQ+ Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYVNLNIKDQLAR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + DP ++ L TT+ + N G + Sbjct: 170 VTGISEVGVLGGGEYAMRVWLDPDKMTNLGLTTSDVHAALAEQNVQVAAGKIGAAPYASA 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ + K + + + + + + Sbjct: 230 QDVQFNLVTKGRLESVE-------------EFENVVLRANNDGSSVYLKDIARVELGKKF 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + S ++ + + + + L A Sbjct: 277 YDGNGQFRGKDASIVTLSLQSDANALESGKAVMEMLEKLSATFPEGLAYETSYDTTLFVA 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV+ V ++ + + L+ +I +++I T A++ + G T+ + Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMLMTGFTINTVT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471 + G++L IG+ VD ILV E + +++ S + + I S + Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTIMKRDPSLSPRKATLIAMKEVTGPIITSTLVLLAVF 456 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525 I +L G R FA+T+ ++++IS A+++ A+ + + K+ + Sbjct: 457 IPVAMLPGITGIMYRQFALTICIAVIISSINALTLSPALCSLVLKQGGDNTARWFKAFNR 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + + I + T + KG + + V Sbjct: 517 GLDKVTDKYGEIAGFFVRKTMILMTFFVIALGAVTFFAKTTSTAFVPQEDKGILLVNVQL 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 LS + Q DG + + +K Sbjct: 577 PDSASLSRTEEVSAKVLEIIEQEQGVDGVTVANGYAFLTGAAASNGASLFVKLKPWGERN 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 + I R + VI + A Sbjct: 637 DMDGDNSSFAITNRINGRAAME-LPEAVIFAMGA 669 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 88/235 (37%), Gaps = 5/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L + + D + Q + + + +++ + + + +K++ P Sbjct: 262 VYLKDIARVELGKKFYDGNGQFRGKDASIVTLSLQSDANALESGKAVMEMLEKLSATFPE 321 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707 T E I+ + +I + + ++ L + + + + T Sbjct: 322 GLAYETSYDTTLFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 + G N + ++ IG V+D ++V + + + S+S R ++ E Sbjct: 382 FAVMLMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTIMKRDPSLSPRKATLIAMKE 440 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G + +++ +P+A+ G FA+ + +++++ +++ ++ + Sbjct: 441 VTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAVIISSINALTLSPAL 495 Score = 58.5 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 64/197 (32%), Gaps = 6/197 (3%) Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695 +++ V Q + + I ++ I + +++ +++ W L Sbjct: 842 AAMERVAAEVLPHGYQYEWTGMAYQEVKAGNQAIYAFALALIFIYLFMVAQYESWSIPLA 901 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 I + + + L G+ NL A ++ LI + + +++ + + + + Sbjct: 902 IILVVPVATFGSFLALNLTGMPLNLYAQIGLVLLIALAAKNAILIVEFAKNEREE--KEV 959 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--SFAIPMAFGIVVAASSS 812 D TS + + +LP+ G I S + + G++ Sbjct: 960 GLDDASVNGGRLRFRAVNMTSWSFILGILPLVFASGAGYISQNSLGVSLIGGLLCVLLVG 1019 Query: 813 IFIAAPILLFIYDWRAK 829 + + R K Sbjct: 1020 TLLIPGFYAMVQRRREK 1036 >gi|16131154|ref|NP_417732.1| multidrug efflux system protein [Escherichia coli str. K-12 substr. MG1655] gi|89110026|ref|AP_003806.1| multidrug efflux system protein [Escherichia coli str. K-12 substr. W3110] gi|170082794|ref|YP_001732114.1| multidrug efflux system protein [Escherichia coli str. K-12 substr. DH10B] gi|238902365|ref|YP_002928161.1| multidrug efflux system protein [Escherichia coli BW2952] gi|256024160|ref|ZP_05438025.1| multidrug efflux system protein [Escherichia sp. 4_1_40B] gi|300946946|ref|ZP_07161177.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 116-1] gi|300958252|ref|ZP_07170399.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 175-1] gi|301028297|ref|ZP_07191557.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 196-1] gi|399429|sp|P24181|ACRF_ECOLI RecName: Full=Acriflavine resistance protein F; AltName: Full=Protein EnvD gi|290409|gb|AAA02932.1| acriflavine resistance protein [Escherichia coli] gi|510830|emb|CAA41017.1| envD [Escherichia coli K-12] gi|1789666|gb|AAC76298.1| multidrug efflux system protein [Escherichia coli str. K-12 substr. MG1655] gi|85676057|dbj|BAE77307.1| multidrug efflux system protein [Escherichia coli str. K12 substr. W3110] gi|169890629|gb|ACB04336.1| multidrug efflux system protein [Escherichia coli str. K-12 substr. DH10B] gi|238861815|gb|ACR63813.1| multidrug efflux system protein [Escherichia coli BW2952] gi|260447707|gb|ACX38129.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Escherichia coli DH1] gi|299878640|gb|EFI86851.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 196-1] gi|300315070|gb|EFJ64854.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 175-1] gi|300453406|gb|EFK17026.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 116-1] gi|315137849|dbj|BAJ45008.1| multidrug efflux system protein [Escherichia coli DH1] Length = 1034 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V ++ V + +E +G+ + + Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291 Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T + ++ ++ P + I + + + + + + Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + + ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|311748772|ref|ZP_07722557.1| AcrB/AcrD/AcrF family protein [Algoriphagus sp. PR1] gi|311302847|gb|EAZ81556.2| AcrB/AcrD/AcrF family protein [Algoriphagus sp. PR1] Length = 1020 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 74/665 (11%), Positives = 186/665 (27%), Gaps = 44/665 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 +++ +I G + + + FPS P I+ Sbjct: 11 RPVLAIVMSLVIILFGAI-----GISLLGIREFPSVDPP-VIN--------VRTTYVGAN 56 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122 D + + +E + ++ + + IT+ F E A+ V + G Sbjct: 57 ADVIEAQITEPLEEAINGIQGIKSLTSTSNDGGSSITVEFDVGADLEAAANDVRDKVSGA 116 Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182 L D + ++ IV D+ +E S +++ + Sbjct: 117 QRNLPPDAEPPVVSKADADSQPIVFLNVKSDE--RTLLELSDIAENIFKERLQTIPGVSR 174 Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242 + DP ++ T + N + S + Sbjct: 175 VQIWGEKEYAIRLRMDPLKMASYGVTPLDVLSKVQSENVELPSGRIEGEAIELSVRTKSR 234 Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302 + + + E + Sbjct: 235 LSTP--------------------QEFNSLIIKEDQNNIVRFQDVGHAELAALNERTVLK 274 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 + + + ++ ++ + + S Sbjct: 275 RDGVPMVGVVLVPLPGSNNIEIVDEFYRRLEFIKKDLPEDVGLEIGFDSTEYIRSSIQEV 334 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 + T LV+ ++F+ + + + +I +++I ++ ++ ++ + ++ GIVL Sbjct: 335 QETILTAFILVVAIIFLFLRDWRTTFIPVLTIPISLIGVFFIMYVMDFSINVLTLLGIVL 394 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479 IGL VD I+V E I K + + + G + + + + + + F Sbjct: 395 SIGLVVDDAIVVLENIYTRIEKGEKPLAAAEKGAEEIFFAVIATTVALAAVFLPVIFLTG 454 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI----P 535 G R F I + +++IS F A+++ + +++ ++ + N F+ Sbjct: 455 TTGRLFREFGIVVAGAVIISSFVALTMTPMLSSRLLKRREKHNRFYNATEPIFVWLNDGY 514 Query: 536 DCIAIQFMRARFWGVGISILF-SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594 D + FM+ R+ + ++ +G I++ + S + Sbjct: 515 DRMLGGFMKFRWVSFVLIAFMGIGIYWLFNQIPSELAPVEDRGEIRIQLSGPEGATFSYM 574 Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 ++ + + D + G S + + + Sbjct: 575 DRVIDQMVADFKAEFPPDEVTGLISVTSPGFGSSSTNSGFIRFILTDSENRERSQNDYFN 634 Query: 655 EIVGP 659 EI Sbjct: 635 EINEM 639 Score = 84.0 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 74/201 (36%), Gaps = 9/201 (4%) Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 LE +KK + E V L ++ +E+ + I+ + +++ W Sbjct: 304 LEFIKKDLPEDVGLEIGFDSTEYIRSSIQEVQETILTAFILVVAIIFLFL---RDWRTTF 360 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 + T+ + + + N+ + ++ IG V+D +VV + + Sbjct: 361 IPVLTIPISLIGVFFIMYVMDFSINVLTLLGIVLSIGLVVDDAIVVLENI---YTRIEKG 417 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASS 811 +K E + T++A LP+ G+ F I +A +++++ Sbjct: 418 EKPLAAAEKGAEEIFFAVIATTVALAAVFLPVIFLTGTTGRLFREFGIVVAGAVIISSFV 477 Query: 812 SIFIAAPILLFIYDWRAKNAR 832 ++ + + + R K+ R Sbjct: 478 ALTMTPMLSSRLLKRREKHNR 498 Score = 71.3 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 67/171 (39%), Gaps = 7/171 (4%) Query: 667 RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 + + + + + + + +F+ + L + T+ L I L G N+ + Sbjct: 853 NSLLFAFLFALVLIYLVLSAQFESFLDPLTIMFTVPLAIFGALFTLWSLGFTLNIFSQIG 912 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 ++ LIG + +++ + + + +S + I + + TS++ + +LP Sbjct: 913 IIMLIGLVTKNGILIVEFAN---QRKASGMSIHEAIYGAAVARFRPILMTSLSTILGILP 969 Query: 786 MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 +A+ G + G+ A ++F+ I ++ + ARI Sbjct: 970 IALGLGAGAESRVPMGAAVIGGLTFATILTLFVIPAIYTYLTSKEGRLARI 1020 >gi|237805415|ref|ZP_04592119.1| multidrug/solvent transporter [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026522|gb|EGI06577.1| multidrug/solvent transporter [Pseudomonas syringae pv. oryzae str. 1_6] Length = 660 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 67/571 (11%), Positives = 153/571 (26%), Gaps = 30/571 (5%) Query: 27 LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 + ++++PS P G + V + ++ + + Sbjct: 2 ISSLPINQYPSIAPPAI---------GIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRY 52 Query: 87 GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 + IT +F + +V L L + ++ + T + + Sbjct: 53 VSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFL 112 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ + + + I+ D I + + DP++L Sbjct: 113 MVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGSQ-YAMRIWLDPAKLNNF 171 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265 T + N G + K + Sbjct: 172 QLTPVDVKSAITAQNVQVSSGQLGGLPAISGQQLNATIIGKTRL-------------QTA 218 Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325 + + +G + + T Sbjct: 219 EQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTA 278 Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385 + + L P + S + T LV +V+++ + + Sbjct: 279 KAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFR 338 Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445 ++ ++ + ++ T +L+ G T+ ++ G+VL IGL VD I+V E + Sbjct: 339 ATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENVERNIELG 398 Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFT 502 + + I + + V F G + FA+T+ +S +IS F Sbjct: 399 LEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFN 458 Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD---CIAIQFMRARFWGVGISILFSIC 559 ++++ A+ +++ + L F +A VG Sbjct: 459 SLTLSPALAAVLLKGHDAPKDRFSRFLDKMLGGWLFRPFNRFFEKASHGYVGTVARVIRS 518 Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 S L + + + G D Sbjct: 519 SGIALLVYAGLMVLTWVGFASTPTGFVPSQD 549 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 89/243 (36%), Gaps = 7/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + Q + L +++ + + + Sbjct: 233 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 292 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I + +I + + + + +++ + + + T+ + + Sbjct: 293 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 352 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + +N++L + K++ Sbjct: 353 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENVERNIEL---GLEPVAATHKAM 409 Query: 766 NETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 E G + T++ + + G G FA+ +A V++A +S+ ++ + Sbjct: 410 AEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAV 469 Query: 823 IYD 825 + Sbjct: 470 LLK 472 >gi|148359715|ref|YP_001250922.1| putative multidrug-efflux system transmembrane protein [Legionella pneumophila str. Corby] gi|296107758|ref|YP_003619459.1| probable multidrug-efflux system transmembrane protein [Legionella pneumophila 2300/99 Alcoy] gi|148281488|gb|ABQ55576.1| probable multidrug-efflux system transmembrane protein [Legionella pneumophila str. Corby] gi|295649660|gb|ADG25507.1| probable multidrug-efflux system transmembrane protein [Legionella pneumophila 2300/99 Alcoy] Length = 1052 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 70/582 (12%), Positives = 169/582 (29%), Gaps = 40/582 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G+L ++++P +P + ++ Sbjct: 10 RPVFATVISIIIVMVGVLS-----YFNLPIEQYPQVVPPT-------------IQVQASY 51 Query: 63 DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + + + + + E + + + ++T++F + V Sbjct: 52 PGANAKTVAETVATPIEQEVNGVENMLYMDSQSTDDGQMRLTITFKLGTDLDQAQVLVQN 111 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + V KL + ++ + T +++ I D+I Sbjct: 112 RVAVVEPKLPEEVRRLGITTNKNSPDLMLVVNLYSPNGQYDQTYIGNYAILHIRDKIRRI 171 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E L + +P + T + N ++ + Sbjct: 172 EGVGNVLIFGASEYAMRLWLNPDLMNTFNLTANDVLAAVRAQNVQVASGKLNLQPQKKQY 231 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 G +Y +E K + K + I G R + Sbjct: 232 GFEYHIETKGRL-------------VKKEEFENIIVKSGEGGRIVRLKDIGRVELGTQNY 278 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T + + P + Sbjct: 279 LTKGYLDKYPAVALPIYQRPGTNALATAQEIIKTMKTIAKDFPPGITYDMAYNPTLFVQQ 338 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+ + + + ++ +I +++I T A++ +G +L ++ Sbjct: 339 SIDAVFHTIYEAIALVVLVILIFLQTWRASVIPVVAIPVSLIGTFAVMQAIGFSLNYLTL 398 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ VD I+V E + + + + + S + + + + Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERNIQAGMNPRDAARKTMTEVGSALVAMGLVLIAVFLPT 458 Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 F G + F T+ ++ IS+F ++++ M + + ++I L+ + Sbjct: 459 VFLEGISGRFYQQFGTTLAVATAISVFVSLTLTPTMAVLL-LRAHHETIKQEGLAWWRKP 517 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576 F R + YGI Sbjct: 518 VYGFLHGFNRLMEGFSRQYGKLVATLTRKTALMIIAYGIFIS 559 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 24/207 (11%), Positives = 71/207 (34%), Gaps = 7/207 (3%) Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689 + +K+ + I + + ++ + I + + + +++ Sbjct: 844 SSDEALATMEKLAQNNLPDGIGYEWTEIAYQQKMVGNTALMAFTLGVIFIFLVLAAQYES 903 Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 W L I + + + ++ + G+E N+ L LIG + + +++ + R + Sbjct: 904 WSLPLAVILIVPMCLFSSMLGVKILGMENNIMTQIGFLVLIGLASKNAILIVEFAR---Q 960 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806 L + ++ L + TS A + V P+ + G + + + + G++ Sbjct: 961 LENRGYNLWKAAIQAAKLRLRPILMTSFAFILGVFPLIIATGAGAEMRRALGVAVFSGML 1020 Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833 + + I ++ Sbjct: 1021 GVTFFGLIFTPLFYVLISRLSRYKRKL 1047 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 70/203 (34%), Gaps = 9/203 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + + ++ + K + N + + + + + + +LI++ Sbjct: 304 ATAQEIIKTMKTIAKDFPPGITYDMAYNPTLFVQQSIDAVFHTIYEAIALVVLVILIFLQ 363 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W ++ + + + + T G N + ++ IG V+D +VV + M Sbjct: 364 ---TWRASVIPVVAIPVSLIGTFAVMQAIGFSLNYLTLFGLVLAIGIVVDDAIVVVENME 420 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802 +N++ ++ RD K++ E V + LP G F +A Sbjct: 421 RNIQA---GMNPRDAARKTMTEVGSALVAMGLVLIAVFLPTVFLEGISGRFYQQFGTTLA 477 Query: 803 FGIVVAASSSIFIAAPILLFIYD 825 ++ S+ + + + + Sbjct: 478 VATAISVFVSLTLTPTMAVLLLR 500 >gi|258623910|ref|ZP_05718863.1| protein export protein SecD [Vibrio mimicus VM603] gi|258583704|gb|EEW08500.1| protein export protein SecD [Vibrio mimicus VM603] Length = 612 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 152/512 (29%), Positives = 261/512 (50%), Gaps = 25/512 (4%) Query: 25 NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84 + S+ ++ + + I LGLDLRGG +L VD D D ++ L+ E Sbjct: 113 TYSYVSVAPKWLDELGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAE 172 Query: 85 GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144 + S++ + N +F + + V +LQ + + + + Sbjct: 173 RLRGVSVQAVGND---AFDVKTQQPQALNHVRQYLQ--------ENYRGWDIRQGSDHLQ 221 Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204 + SQ N + + I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + Sbjct: 222 VQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKN 281 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 ++G TA ++F++ F L D +G ++ + +SG H+ A A D Sbjct: 282 VIGATASLAFYEAKS--PTDARSFDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNM 339 Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313 V G + V R+ + + + Q+ Sbjct: 340 GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNAHGETVRSERVISVATIQSQL 399 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 + +I+G ++E A LA +LRAGSL + IVEER +GA LG ++I G A+ GL Sbjct: 400 GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLA 459 Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432 + + FM + Y + G VA+ ++ +N+ L L++LL A LTLP IAG+VL +G+AVD+N+ Sbjct: 460 MTLTFMALWYRRLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 519 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 L+ ERIR++ + ++ ++D GF A+STI D+NIT +I V+L+ G G ++GFA+T+ Sbjct: 520 LIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTL 579 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 GL +L SMF+ + RA++ + + + Sbjct: 580 GLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + + TI +G + E I G + + L ++ + + Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLAMTLTFMALWY 469 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L++++ LG AL G L +A ++ +G +V+ V++++R+R Sbjct: 470 R-RLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + +F ID + + ++ I+ + + G I FA+ + G++ Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + S +F + ++ ++ + Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608 >gi|217972304|ref|YP_002357055.1| preprotein translocase subunit SecD [Shewanella baltica OS223] gi|217497439|gb|ACK45632.1| protein-export membrane protein SecD [Shewanella baltica OS223] Length = 604 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 165/527 (31%), Positives = 274/527 (51%), Gaps = 34/527 (6%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 + ++ P L S+ PS + I LGLDLRGG +L+VD D + Sbjct: 94 TLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGE 153 Query: 72 MYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 D LR F++++ I S+ Q N++ L+ D+ + + + Sbjct: 154 ALVDSLRQFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQ------- 206 Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 L T + I LSQ ++ + ++Q+++++R RI+++GI+E+ +QR G HRI Sbjct: 207 ----LSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGDHRIR 262 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 I+LPG QDP+ + ++G TA ++F +V L D G V + Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLNDKSGKPIYVSRTPVLG 317 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306 G H+ A A+ V+I+ D +G ++ E +R NIGKP+A Sbjct: 318 GDHIVDARASLGEMGM-AEVNINLDRVGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAK 376 Query: 307 --------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 Q+ + +I+G T + A LA +LRAGS+ + IVEER +G LG+ Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417 ++I G A+ G+ + +LFM + Y + G VA+ ++ N+++ LL+L+ A LTLP I Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG+VL +G+AVD+N+L+ ERI+++ ++ +S ++D GF A+STIFD+N T +I VVL Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 + G G ++GFA+T+GL +L SMFT I RA++ + + + Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDVSRHVR 603 Score = 121 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 90/256 (35%), Gaps = 5/256 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G + + S + + + ++ L G Q Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I G + + L+++ + ++ Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R++ +K Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID + + I+ + + G I FA+ + G++ + Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580 Query: 811 SSIFIAAPILLFIYDW 826 + IF + ++ +Y Sbjct: 581 TGIFASRALINLVYGR 596 >gi|190573980|ref|YP_001971825.1| preprotein translocase subunit SecD [Stenotrophomonas maltophilia K279a] gi|190011902|emb|CAQ45523.1| putative protein-export membrane protein [Stenotrophomonas maltophilia K279a] Length = 626 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 159/519 (30%), Positives = 273/519 (52%), Gaps = 37/519 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDL+GG H VL+VD+ ++ L Y++++RS L+ I Sbjct: 111 NLASTVPDWLANLGGRPMVLGLDLQGGVHFVLQVDQKAALDKRLDAYTEDVRSTLRDARI 170 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I + + S + ++ + L + I++ Sbjct: 171 AYQSVERRADNSIVANLSPSAGDDAAQRARAALVK---------AQPTLGYDVSGNRITV 221 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + I Q+ + AIEQ++ +R R++Q+G++E IQR G+ R+++QLPG QD + +++ Sbjct: 222 TVPETEIAQIANGAIEQNINTLRNRVNQLGVAEPIIQRQGADRVVVQLPGVQDTAEAKRM 281 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + + V+ N++ G G L+ +V ++G + GA A Sbjct: 282 IGATATLEYRAVVEGNAQDAIDSGRIPPEAKVYQRRDGGGPILLNKRVIVTGDQMVGAQA 341 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319 D + P V ++ + +G +R F+ T N+ KP+AVV RV T +++ G Sbjct: 342 VTDSTSGAPAVSVTLNNVGGQRMFDFTSANVNKPMAVVYTERVPTVTLVDGQEVRGFKVN 401 Query: 320 SGNFTIE------------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 ++ A LA +L++GSL ++ VEER VG LG++++ Sbjct: 402 EEVISVANINGVFGKNFQTTGLQKKEADDLAKLLKSGSLAAPMDFVEERVVGPSLGAENV 461 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 G A+V + ++F V Y +G++ ++ N+++ +A++SL GAT+TLP AG+ Sbjct: 462 KNGMRAVVFAFLFTLVFFSVYYRMFGVITSIAMLFNLLIVVAVMSLFGATMTLPGFAGLA 521 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +GL+VD+N+L+NERIREE R ++ G+ RA TI D+N+T LI V LF FG Sbjct: 522 LSVGLSVDANVLINERIREELRAGVPGKTAIVTGYERASGTILDANLTGLIVGVALFAFG 581 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 G ++GFA+TM + I SMFTAI++ RA+ I +K Sbjct: 582 TGPLKGFALTMIIGIFASMFTAITVSRALATLIYGRRKK 620 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 91/254 (35%), Gaps = 4/254 (1%) Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635 + V+ V + E N + +Q + Sbjct: 371 NVNKPMAVVYTERVPTVTLVDGQEVRGFKVNEEVISVANINGVFGKNFQTTGLQKKEADD 430 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 K + +VGP + E ++ G+ V+ + + L++ + ++ F + Sbjct: 431 LAKLLKSGSLAAPMDFVEERVVGPSLGAENVKNGMRAVVFAFLFTLVFFSVYYRM-FGVI 489 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 ++ ++ + +LFG L A + +G SV+ V++ +R+R+ ++ Sbjct: 490 TSIAMLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRAGVPGK 549 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 + I G + ++ I + + +G + FA+ M GI + ++I + Sbjct: 550 T---AIVTGYERASGTILDANLTGLIVGVALFAFGTGPLKGFALTMIIGIFASMFTAITV 606 Query: 816 AAPILLFIYDWRAK 829 + + IY R K Sbjct: 607 SRALATLIYGRRKK 620 Score = 43.1 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 26/119 (21%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W ++ ++ + L ALPN + + + RGG ++ Sbjct: 10 LEFPRWKYVVILIVLALSALYALPNIYQKDPALQITAN------------RGG-----QI 52 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D D + + LK G+ + + + + D + + +D + + Sbjct: 53 D---------DALRDRVLADLKTAGVTPVGVEKEGESLIVRLPDLKAQSAASDALRDTV 102 >gi|187925230|ref|YP_001896872.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia phytofirmans PsJN] gi|187716424|gb|ACD17648.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia phytofirmans PsJN] Length = 1073 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 67/575 (11%), Positives = 156/575 (27%), Gaps = 46/575 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+ + ++P+ P + + Sbjct: 8 RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPA-------------VQISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 ++ + + + S + ITL+FA + +V Sbjct: 50 PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L ++ T +++ + + + + + D + Sbjct: 110 KLQLATPLLPQAVQQLGTKVTKSSSSFLLVMAFVSEDGSMNKYDLANYVASNIQDPVSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + D ++L T + N G G Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVETALQAQNVQVAGGSLGGTPSVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + + + + + R I Sbjct: 229 VLQATITEATLL-------------NTPEQFGNVLLKVNQDGSRVRIKDVARIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A L + Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATAKAVRAKVAELSKYFPHGLVVQYPYDTTPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A++ L+G ++ S+ Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMGLVGFSINTLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMQEEGLSPRDATRKAMDQITGALVGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F++T+ ++++S+ A+ + A+ I +K I+ + Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIEQGHQEKTTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 F ++R S L + Sbjct: 511 FFGWFNRTFNKSRDKYHSGVHHVIKRSGRWLIIYM 545 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V + + + +++A + + ++++ Sbjct: 258 SRVRIKDVARIELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRAKVAELSKYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + R I + + ++ + + + +++ + L + + + Sbjct: 318 PHGLVVQYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T L G N ++ ++ IG V+D +VV + + + +S RD K++ Sbjct: 378 GTFAIMGLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMQEEGLSPRDATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G V ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 76/221 (34%), Gaps = 8/221 (3%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + ++G ++ PG S Q + + + Sbjct: 816 ERYNGISAVEIQGAAAPGKSTGQAMTAMEALVAKLPAGVGYEWTGLSLQERQSGSQAPIL 875 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + +++ + + + W I + L + L L G+E ++ +LT Sbjct: 876 YGISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 +G S + +++ + R+ + + ++ L + TS+A + V+P+A+ Sbjct: 933 TVGLSAKNAILIVEFARE--LQQGEGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990 Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 G + + + G++ A +IF+ + I Sbjct: 991 SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 Score = 55.9 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 67/520 (12%), Positives = 135/520 (25%), Gaps = 28/520 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I +I +GLL + P L G + Sbjct: 536 RSGRWLIIYMVVIFAVGLLFV------KLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + L + S G Q + + D +++ KV + Sbjct: 590 LKDVSDYLLNTEKSIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHSDQKVQALVGR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L+ I + + D + E + + + + + Sbjct: 650 LFMHFGSYKNA-LVYPVNPPSIPELGTAAGFDFELQDRAGVGHEKLMEARNMLLGMAAKD 708 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 L R Q + + +S + S V D+DG Sbjct: 709 PTLAQVRPNGLNDTPQFKVDIDHEKASALGVSLSAIDQTFSIAWASQYVNNFLDTDGRI- 767 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 KV + G T + + T + + Sbjct: 768 ---KKVYLQGDAPFRMTPEDLNAWYVRNSAGGMVPFSSFASGTWTYGSPKLERYNGISAV 824 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T A + G L++ E ++ Sbjct: 825 EIQGAAAPGKSTGQA------MTAMEALVAKLPAGVGYEWTGLSLQERQSGSQA------ 872 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 I +V + L + + L VI L +L G + G++ Sbjct: 873 -PILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 +GL+ + IL+ E RE + + + I +++ ++ + L Sbjct: 932 TTVGLSAKNAILIVEFARELQQGEGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAIS 991 Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 G + + +L + F AI ++ + I Sbjct: 992 NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 >gi|90021054|ref|YP_526881.1| secretion protein SecD [Saccharophagus degradans 2-40] gi|89950654|gb|ABD80669.1| protein-export membrane protein SecD [Saccharophagus degradans 2-40] Length = 622 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 156/526 (29%), Positives = 277/526 (52%), Gaps = 38/526 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + +SLGLDL GG H +LEVD + + ++ + D++ ++KE + Sbjct: 105 NLAPTTPQWLVDLGAGPMSLGLDLAGGVHFLLEVDTESVLAKEMEGFEDDISGLIRKEKL 164 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 S R +I ++ +D + + + K + + + ++ V Sbjct: 165 YGVSTRLTDGEIVIT--------ADSDDLRTDVLLLLKKELSELETKRTERGGKYIVTAV 216 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 S I + HA++Q++ +R R+++IG+SE +Q G +RI++QLPG QD +R +++L Sbjct: 217 PSDAYIREKEKHAVQQNLTTLRNRVNEIGVSEPLVQTQGRNRIVVQLPGIQDTARAKKIL 276 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL---VEDKVEISGIHLNGATANFDP 263 G TA + F P + F + +Y +E + ++G ++ GAT FD Sbjct: 277 GKTANLEFRLEAPKDGLASQKEHFEFRDEIKQARYGGAWLEKRPFVTGQNVTGATPGFDD 336 Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLD 299 +++ P+V IS D GA TR ++ + + + Sbjct: 337 QSNSPMVSISLDSKGAGLMHRKTRKHVNESMAIVLIEYDTKVREEVNEAGETVIVTEQVP 396 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + + S + QI+G + E A LA +RAG+L ++ VEER +GA LG + Sbjct: 397 NPKMVSLANINEALSKRFQITGLDSPEEASELALYIRAGALAAPMSFVEERTIGASLGQE 456 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 +I G ++ GLVL+++FM+V Y +G A+ ++ +N+++ +A++S+ GATLTLP IAG Sbjct: 457 NIDLGVKSVQLGLVLVLIFMMVFYKVFGFFANLALAVNLMVLVAVMSMFGATLTLPGIAG 516 Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 IVL +G+AVD+N+L+ RI+EE + S +++ G+ A+STI D+N+T I ++L+ Sbjct: 517 IVLTVGMAVDANVLIFSRIKEELKAGSSSQTAINSGYDSAFSTILDANLTTFIVAIILYA 576 Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G V+GFA+T+ + I+ SMFTAI RA++ + +K + I Sbjct: 577 IGSGPVKGFAVTLAIGIITSMFTAIVGTRALVNLAFGGRNVKKLWI 622 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 106/284 (37%), Gaps = 6/284 (2%) Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608 +SI L+ + + + + +++ + + Sbjct: 340 SPMVSISLDSKGAGLMHRKTRKHVNESMAIVLIEYDTKVREEVNEAGETVIVTEQVPNPK 399 Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIR 667 N + ++Q + E + + + + +G + +E I Sbjct: 400 MVSLANINEALSKRFQITGLDSPEEASELALYIRAGALAAPMSFVEERTIGASLGQENID 459 Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727 G+ V + + +LI++ + +K F A L +++ + ++FG L +A ++ Sbjct: 460 LGVKSVQLGLVLVLIFMMVFYKV-FGFFANLALAVNLMVLVAVMSMFGATLTLPGIAGIV 518 Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787 +G +V+ V+++ R+++ +K ++S + I+ + + ++ FI + + Sbjct: 519 LTVGMAVDANVLIFSRIKEELKAGSSSQT---AINSGYDSAFSTILDANLTTFIVAIILY 575 Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF-IYDWRAKN 830 G + FA+ +A GI+ + ++I ++ K Sbjct: 576 AIGSGPVKGFAVTLAIGIITSMFTAIVGTRALVNLAFGGRNVKK 619 Score = 47.8 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 25/164 (15%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W +L + IG L +LPN + G +EVD Sbjct: 3 RYPLWKYLLILAVVVIGFLYSLPNIYVPDPAIQI----------------SGIRSGVEVD 46 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + L++ GI F + + FA + V L Sbjct: 47 A---------NALNTATKALEENGIQYFGAEAGEKSALIRFATQDDQLRARTIVQRALSQ 97 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165 N + + + + ++ + +E E Sbjct: 98 ENYVVAFNLAPTTPQWLVDLGAGPMSLGLDLAGGVHFLLEVDTE 141 >gi|167647069|ref|YP_001684732.1| protein-export membrane protein SecF [Caulobacter sp. K31] gi|167349499|gb|ABZ72234.1| protein-export membrane protein SecF [Caulobacter sp. K31] Length = 316 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 162/303 (53%), Gaps = 3/303 (0%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + LIP +F++ S L + S FT GLN GIDFKGG+ L Sbjct: 1 MASWPLIRLIPRSTHFRFVKWAPIAAIFSALLIVGSGVSFFTQGLNLGIDFKGGVALEAR 60 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 P+ + +R+ L D Q F + ++R + G + Q + ++ K+ + Sbjct: 61 MPTPIPTAELRTALAGFGAHDAQVQPFGSPNSAMIRFLPEAGQNPNQAAM--DLEGKLKQ 118 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 P TI + +G K+S EL+ KG + + I+ ML YIW RF + GA+ ++ DI Sbjct: 119 RFPTMTIPSHSAIGAKVSGELLGKGFMALGIALALMLGYIWFRFGLSYGTGAVVAVLHDI 178 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 TLG ++ IEF++T++AA+LT+IGYS+N+KV+ +DR+++N++ Y + R++ID S Sbjct: 179 LLTLGLLSVLRIEFSMTSIAALLTVIGYSMNEKVITFDRLKENLRKY-KTTPLREIIDLS 237 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 NE L R++ T A +++ +GG V+ M FGI++ SS++IA P++L Sbjct: 238 ENERLSRTIITGTTALLALGGTMFFGGPVLFPLVFTMTFGIIIGTYSSVYIALPLILVWG 297 Query: 825 DWR 827 R Sbjct: 298 VKR 300 Score = 38.5 bits (87), Expect = 5.3, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 75/206 (36%), Gaps = 4/206 (1%) Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375 + A + P G +A +++ Sbjct: 96 RFLPEAGQNPNQAAMDLEGKLKQRFPTMTIPSHSAIGAKVSGELLGKGFMALGIALALML 155 Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435 +G A ++ +++LTL LLS+L ++ SIA ++ IG +++ ++ Sbjct: 156 GYIWFRFGLSYGTGAVVAVLHDILLTLGLLSVLRIEFSMTSIAALLTVIGYSMNEKVITF 215 Query: 436 ERIREENRKNQSV--FCSLD-MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 +R++E RK ++ +D R TI L +FF GG + TM Sbjct: 216 DRLKENLRKYKTTPLREIIDLSENERLSRTIITGTTALLALGGTMFF-GGPVLFPLVFTM 274 Query: 493 GLSILISMFTAISIVRAMMIFIIRYK 518 I+I ++++ I +++ + Sbjct: 275 TFGIIIGTYSSVYIALPLILVWGVKR 300 >gi|254227780|ref|ZP_04921211.1| protein-export membrane protein SecD [Vibrio sp. Ex25] gi|262395822|ref|YP_003287675.1| protein-export membrane protein SecD [Vibrio sp. Ex25] gi|151939822|gb|EDN58649.1| protein-export membrane protein SecD [Vibrio sp. Ex25] gi|262339416|gb|ACY53210.1| protein-export membrane protein SecD [Vibrio sp. Ex25] Length = 612 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 156/513 (30%), Positives = 272/513 (53%), Gaps = 27/513 (5%) Query: 25 NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84 F S+ + + M + I LGLDLRGG +L VD + DE+++ L+ + Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRNALIDEIKASLRDQ 172 Query: 85 GIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143 + +R + N+I + + + +V FL+ +V ++ + Sbjct: 173 RVRGVQIRAESGNRIAV----NSESDTALAEVNKFLRQ--------NYPGWVVKSSSRGF 220 Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203 + S+ NI + S ++Q+++I+R RI+++GI+E+ +QR G I I+LPG QDP++ + Sbjct: 221 VLEPSEQNIQEFQSTTLQQNLKIMRGRIEELGITEALVQRQGKDSIRIELPGVQDPAQAK 280 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 ++G TA ++F++V + L+D+DG ++E + ++G H+ A A D Sbjct: 281 NVIGATASLAFYEVKDAGQARSGQ--DLVLKDNDGRTVVLEKRPVLTGEHIVNARAGVDN 338 Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312 V G + V R+ V + + Q+ Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERVISVATIQSQ 398 Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372 + +I+G +++ A LA +LRAGSL + IVEER +GA LG+++I G A+ G+ Sbjct: 399 LGSQFRITGAGSMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGM 458 Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431 L + FM + Y + G VA+ ++ N++ L L++LL A LTLP IAG+VL +G+AVD+N Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +++ ERI+++ R+ +S ++D+GF A+STI D+NIT +I V+L+ G G ++GFA+T Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALT 578 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +GL +L SMFT + RAM+ I + + Sbjct: 579 LGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 611 Score = 107 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + TI +G + E I G + + L ++ + + Sbjct: 410 SMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 469 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L ++ LG AL G L +A ++ +G +V+ V++++R++ Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 M+ SF ID + + ++ I+ + + G I FA+ + G++ Sbjct: 529 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 585 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + + +F + ++ I+ A+ Sbjct: 586 SMFTGVFASRAMINLIWGRDARR 608 >gi|238759233|ref|ZP_04620400.1| Acriflavine resistance protein B [Yersinia aldovae ATCC 35236] gi|238702520|gb|EEP95070.1| Acriflavine resistance protein B [Yersinia aldovae ATCC 35236] Length = 1050 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 68/689 (9%), Positives = 176/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ISISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGSVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNFGLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVQLGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T L+ + Sbjct: 276 NVIARYNGKPAAGIGIKLATGANALNTSAAVKAELEKLQPFFPAGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS+ G ++ ++ Sbjct: 336 SIHEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSVFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFG G R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D +A + + + + L + +G V Sbjct: 516 NRMFEKSTHHYTDSVANILRSTGRYLLIYLAIVVGMGVLFLRLPSSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L + + + F V G +K Sbjct: 576 QMPAGATQERTQKVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFISLKDWSE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + ++ + Sbjct: 636 RPGAENKVPAIVDRASAAFSQIKDGLVFA 664 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + ++ + + +++ + ++ +K+ Sbjct: 258 SQVRLKDVAIVQLGAESYNVIARYNGKPAAGIGIKLATGANALNTSAAVKAELEKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + +I + I + + +++ + + L + + + Sbjct: 318 PAGLKVVYPYDTTPFVKISIHEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T ++FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSVFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 60.9 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 +L G+ ++ +LT IG S + +++ + + M + +++ L Sbjct: 915 ASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLEAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+ + G + + G++ A +I Sbjct: 973 PILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018 >gi|238021373|ref|ZP_04601799.1| hypothetical protein GCWU000324_01272 [Kingella oralis ATCC 51147] gi|237868353|gb|EEP69359.1| hypothetical protein GCWU000324_01272 [Kingella oralis ATCC 51147] Length = 313 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 85/303 (28%), Positives = 148/303 (48%), Gaps = 1/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FM IS+ I ++ L T GLN ++F GG + V Sbjct: 1 MELFHFKRDIPFMSYGKLTTFISLATFILAVIFLLTRGLNLSVEFTGGTLMEVEYASAQG 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + + + Q N + ++ + ++ ++ V + + + Sbjct: 61 ADLNKVRHSLDTLKMGEIQVQALGTNKHIMIRLPNREDLSSAQLSNQVMDVLKKDSSDVS 120 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E +GP + EL+ G+ + + ++IY+ +RF+W FA+ AI + DI LG Sbjct: 121 LRQVEFIGPAVGDELVSHGLTALGMVVFGIIIYLAMRFEWRFAVSAIIANMHDIVIILGC 180 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769 FA F EF+LT +A VL ++GYSVN+ VVV+DR+R+N + + S ++ID +I T+ Sbjct: 181 FAFFQWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENFYKGSMRNHSVPEVIDNAITHTM 240 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 GR+V T + V+ M ++GG+ + FA+ + GIV SS+ +A+P+LL R Sbjct: 241 GRTVITHGSTEAMVISMLIFGGAALHGFAMALTIGIVFGIYSSVLVASPLLLMFGLDRHN 300 Query: 830 NAR 832 + Sbjct: 301 IVK 303 >gi|323951214|gb|EGB47089.1| hydrophobe/amphiphile efflux-1 family protein RND transporter [Escherichia coli H252] Length = 1034 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.3 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I++ + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + R+ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|301647042|ref|ZP_07246874.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 146-1] gi|307139954|ref|ZP_07499310.1| multidrug efflux system protein [Escherichia coli H736] gi|331643966|ref|ZP_08345097.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli H736] gi|301074792|gb|EFK89598.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 146-1] gi|331037437|gb|EGI09661.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli H736] Length = 1034 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 69/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL +GL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLALGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V ++ V + +E +G+ + + Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291 Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T + ++ ++ P + I + + + + + + Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ +G V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLALGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + + ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|170768847|ref|ZP_02903300.1| multidrug efflux transport protein EefB [Escherichia albertii TW07627] gi|170122395|gb|EDS91326.1| multidrug efflux transport protein EefB [Escherichia albertii TW07627] Length = 1031 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 74/683 (10%), Positives = 188/683 (27%), Gaps = 39/683 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ +I G+L + ++P P Sbjct: 8 RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPTIR---------ISATYTGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 + + + ++ + L S I ++F + +V +Q Sbjct: 54 SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 S+L + ++ + + ++++ + + + + ++ D + E Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKATSSDIADWLVSNVQDPLARVEGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP++L + + N G ++ Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + I + + Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYNAI 279 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 L + T A + + + S Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV+ V+++ + + L+ ++ + ++ T +L+L G ++ ++ + Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399 Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + R + + + + + + F Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 FGG R F++T+ ++L+S+ A+++ A+ ++++ F Sbjct: 460 FGGSTGVIYRQFSVTIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519 Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 + Q R + + L+ + + ++ V P + Sbjct: 520 EVRYQHGVLYVLQRAARTIGVYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650 R+ + QI D N + + + G +K +T Sbjct: 580 AARTAEVNRQIVDWFLVNEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639 Query: 651 IQNTEIVGPKISRELIRKGIVGV 673 Q + K + + + Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 87/235 (37%), Gaps = 10/235 (4%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V + + + + + +++ +++ + +P Sbjct: 261 VRIKDVARVEMGSEDYNAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + + + I + + + ++ +++ + L + + + T Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G ALFG N + A++ IG V+D +VV + + + + R+ +KS+ E Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V ++ LPMA +GGS F++ I+ A S+ +A + Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVT----IISAMLLSVVVALTL 489 >gi|148255765|ref|YP_001240350.1| preprotein translocase subunit SecF [Bradyrhizobium sp. BTAi1] gi|146407938|gb|ABQ36444.1| protein translocase subunit secF [Bradyrhizobium sp. BTAi1] Length = 335 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 114/295 (38%), Positives = 185/295 (62%), Gaps = 6/295 (2%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590 ++PD F + R IS SI +I L FTHGLN+GIDFKGG L V A D Sbjct: 29 RIVPDDTHFDFTQFRRISFPISATLSIIAIVLFFTHGLNFGIDFKGGTLLEVRAKSGTAD 88 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +RS L L +G++ Q F G + L+R QPG AQ + V+ + Sbjct: 89 IASMRSELSKLNLGEVQLQQFGGPADVLIRFAAQPGGDSAQQEAVNKVRGAL---GDTVD 145 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + E++G ++S EL+ G++G++++ +++LIY+W RF+W FALGA+ + DI T+GF Sbjct: 146 YRRVEVLGARVSGELLAMGMLGLMLAIVSILIYLWFRFEWQFALGAMIANVHDIVLTIGF 205 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 ++ ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y + L+++SIN TL Sbjct: 206 MSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLS 264 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824 RS+ T + +++L + ++GG+ I SF M FG ++V +SIFIAAPIL+++ Sbjct: 265 RSIITHVTVTLALLALLLFGGTAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 319 >gi|293603369|ref|ZP_06685797.1| AcrB/AcrD/AcrF family protein [Achromobacter piechaudii ATCC 43553] gi|292818279|gb|EFF77332.1| AcrB/AcrD/AcrF family protein [Achromobacter piechaudii ATCC 43553] Length = 1038 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 74/635 (11%), Positives = 181/635 (28%), Gaps = 41/635 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +L +I IGL+ + + +P + Sbjct: 9 KRPVFASVLSLIIVLIGLIS-----YSRLTVREYPKIDEPIV---------SVDTTYKGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + ++ + ++ + R ++ I + F SR + A +V + Sbjct: 55 SPEVIESQVTKPLEDQLAGIEGVDVMTSRSRSERSLINIKFNLSRNPDAAAAEVRDKVSR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + ++ I+ AI+ S I R ++ + Sbjct: 115 ARRFLPDEIDEPIIGKVEADSQPIIYIAVES--GSFSAIQTSDYINRYIKTRLSVLPGAA 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + L + D +L T + N R S + Sbjct: 173 EVRVFGERLPSMRIYVDRDKLAAYGLTVQDVEAALRSQNVEIPAGRIESRAREFSVVSST 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 ++ + D+ + + A Sbjct: 233 DLQTPAQFE--------------------DVIVANVKGYPVRLRDVSKVEIGAASDRVLS 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + ++ + + A L + + S Sbjct: 273 RFNGKPAINIGVTRQSTANPLELSKAARQEIERLNETLPAGMKLTIAYDSSVFIERSIDS 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++V+F + + ++ +I ++++ AL+ G ++ ++ +V Sbjct: 333 VFHTIGEAIILVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYFFGFSINTLTLLAMV 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IGL VD I+V E I + + G + +T + L F Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMPRKEAALRGSKEIGFAVVAMTMTLVTVYAPLAFAT 452 Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF--FLIPD 536 G R FA+ + ++L+S F A+++ M ++R++ S N + + L Sbjct: 453 GRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQSSHSRWYNLIEGWLNGLSNG 512 Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 + R + + I ++ + + + + + + + Sbjct: 513 YRRLLGASLRHRWLVVVIGVAVALGSGVLFKVVKSELAPIEDRGVVFGIVSSPEGATLNY 572 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 L+S+ + + V + + Sbjct: 573 TLDSMLGIEKFYSEISEASGSQVTVGFPTVTDGTA 607 Score = 83.2 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 32/249 (12%), Positives = 84/249 (33%), Gaps = 7/249 (2%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 PV L V + + + + + + ++ +++ E +P Sbjct: 252 PVRLRDVSKVEIGAASDRVLSRFNGKPAINIGVTRQSTANPLELSKAARQEIERLNETLP 311 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706 I + + I +++ I+ + ++ I T+ + + Sbjct: 312 AGMKLTIAYDSSVFIERSIDSVFHTIGEAIILVVLVIFFFLRNLRASIIPIVTIPVSLVG 371 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 FG N + A++ IG V+D +VV + + + + ++ + Sbjct: 372 ACALMYFFGFSINTLTLLAMVLAIGLVVDDAIVVLENI---YRHIEEGMPRKEAALRGSK 428 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823 E V +M P+A G FA+ +A ++V+ ++ + + + Sbjct: 429 EIGFAVVAMTMTLVTVYAPLAFATGRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVL 488 Query: 824 YDWRAKNAR 832 ++ ++R Sbjct: 489 LRHQSSHSR 497 Score = 49.3 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 60/519 (11%), Positives = 132/519 (25%), Gaps = 42/519 (8%) Query: 12 SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 ++ IG+ +AL + + ++ + + + G+ V + L Sbjct: 525 WLVVVIGVAVALGSGVLFKVVKSELAPIEDRGVVFGI-----------VSSPE--GATLN 571 Query: 72 MYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENI-----ADKVTLFLQGVNSK 125 D + + + +++T+ F I ++ Q + + Sbjct: 572 YTLDSML----GIEKFYSEISEASGSQVTVGFPTVTDGTAILRLKPWEERERKQQAITQQ 627 Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185 L V + V + Q+ R+ + ++E Sbjct: 628 LQPQFASLPGVRAFPTNPPSLGQSARSKPVEFIIMSQASYAELARLTDVFLTEL------ 681 Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245 R L RL G G Q Sbjct: 682 --RKYPGLLNLDTDLRLNTPELRVRVDRDKMAD--VGANVDTVGRTLETMLGGRQVTRYK 737 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305 + T G+ + L+ Sbjct: 738 DEGEQYDVIVQVTPRDRATPTDISGIYVRARDGSMVQLDNLLGVHEGVSPQSLNHFNRLR 797 Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365 V A + + + + LP + + S Sbjct: 798 AVKIDAAVAPG------YALGEVLTHMHQVARDVLPNTIVTDLDGQSREFRDSSGSIYLV 851 Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 + + +VL + + S+ L++ L L L G TL++ S G++ +G Sbjct: 852 FGMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQIGLITLVG 911 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GG 482 L IL+ E + + + +F ++ I + ++ TV L G Sbjct: 912 LITKHGILIVEFTNQLRDEGKELFAAVTEASVLRLRPILMTTGAMVLGTVPLALSTGAGA 971 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521 + + + +L+ + +V I +K Sbjct: 972 ESRQQIGWVLVGGLLLGTLLTLFVVPVAYTLIATARKKP 1010 Score = 47.0 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 G + ++ IY+ + W + ++ L +T L L G ++ + Sbjct: 845 SGSIYLVFGMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQI 904 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 ++TL+G +++ + +L + ++ L + T+ A + + Sbjct: 905 GLITLVGLITKHGILIVEF---TNQLRDEGKELFAAVTEASVLRLRPILMTTGAMVLGTV 961 Query: 785 PMAVWGGS 792 P+A+ G+ Sbjct: 962 PLALSTGA 969 >gi|93006582|ref|YP_581019.1| hydrophobe/amphiphile efflux-1 HAE1 [Psychrobacter cryohalolentis K5] gi|92394260|gb|ABE75535.1| Hydrophobe/amphiphile efflux-1 HAE1 [Psychrobacter cryohalolentis K5] Length = 1100 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 82/696 (11%), Positives = 200/696 (28%), Gaps = 51/696 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ IG++ + ++++P P + + Sbjct: 8 RPIFAWVMAILVMLIGIISVI-----NLPIEQYPRIAPPT-------------ISVSASY 49 Query: 63 DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + +K + S +TL+F + + +V Sbjct: 50 PGANAQTVENSVIQIIEQRMKGLDGLMYMSSSSSSNGSASVTLTFENGTDSDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ S L ++ + +++ + + + I +D I Sbjct: 110 KLQAAMSSLPESVQRQGVNVNKSSSSFLMVQAFISEDGTMDRADIADYINSNVVDSISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + + DPSRLR + + N G Sbjct: 170 EGVGEVQVFGS-TYAMRVWLDPSRLRSYNMVPSDVVNAIRAQNAQVSAGQLGQAPADTDQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 I+ ++ + + + + ++ A Sbjct: 229 QV------------INATVTVQSYLQTPEEFQNILLKTDTSGAQVRLGDVADVEIGSADY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + S + T E G A L +++V Sbjct: 277 SVVSLYNGQEAAALGISLAGGANALETREAVGARMAELEKNFPIGLVSVVPYDTTPFVRL 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + ++ T A+L + G ++ + ++ Sbjct: 337 SIEQVVMTLIEAIVLVFIVMFIFLQNWRATIIPTLAVPVVLLGTFAVLYVAGFSINVLTM 396 Query: 418 AGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIAT 474 +VL IGL VD I+V E + E + S+ + + + I + I + + Sbjct: 397 FAMVLSIGLLVDDAIVVVENVERILEEDPHISIKDATIQSMGEISKIVIGIALILSAVFV 456 Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKS 522 + FF G R F+IT+ ++++S A+ A+ + +++ K+ Sbjct: 457 PMAFFGGSTGVIYRQFSITLITAMVLSAIVALVFTPALCVTLLKRGKSHEKGNEEKQKGF 516 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 S F L RF + + +I + ++ + + + Sbjct: 517 FGWFNRSFFKLSRSYEGFVGKSFRFKWLYLIGYAAIIGVMVVVFLRIPGSFLPEEDQGIM 576 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + S + E L + + + V + + + Sbjct: 577 FTLVQLPAGSTLDETQEVLDKVSNYYTTQEADNIASVFTIAGFSFAGQGQNMGLAFVRLS 636 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + V + + + + + Sbjct: 637 DWEARSGDENTAQAVAGRAMGYFFTQLNEAQVFAIV 672 Score = 84.4 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 93/253 (36%), Gaps = 5/253 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + V L V + E L +++ + ++ Sbjct: 256 TSGAQVRLGDVADVEIGSADYSVVSLYNGQEAAALGISLAGGANALETREAVGARMAELE 315 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 + P+ + R I + ++ +I + + + I ++I + W + + + Sbjct: 316 KNFPIGLVSVVPYDTTPFVRLSIEQVVMTLIEAIVLVFIVMFIFLQNWRATIIPTLAVPV 375 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T + G N+ + A++ IG V+D +VV + + + + IS +D Sbjct: 376 VLLGTFAVLYVAGFSINVLTMFAMVLSIGLLVDDAIVVVENV-ERILEEDPHISIKDATI 434 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 +S+ E + ++ +PMA +GGS F+I + +V++A ++ + Sbjct: 435 QSMGEISKIVIGIALILSAVFVPMAFFGGSTGVIYRQFSITLITAMVLSAIVALVFTPAL 494 Query: 820 LLFIYDWRAKNAR 832 + + + + Sbjct: 495 CVTLLKRGKSHEK 507 Score = 65.9 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 32/255 (12%), Positives = 86/255 (33%), Gaps = 11/255 (4%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 D G + + + ++ ++ N N A + Sbjct: 787 PDDIGKWYVRNEMGDMISFNAFSTSEWQSGSPRLTRYNSLPSMNIQGSAAPGLSTGEAMS 846 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + M++K I T + E ++ + +++ + + + W Sbjct: 847 SMEAMIEKLPEGIGYEWTGMSLEEQKSGAQAPMLYA--LSILVVFLCLA---ALYESWSI 901 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 + + L + + F L G ++ +LT++G S + +++ + ++ Sbjct: 902 PFSVLLVIPLGVLGAVIFTWLRGFANDIYLQVGLLTVVGLSAKNAILIIEFAKE---HQE 958 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809 S ++ + + + + + TS+A + V+P+ + G + + G+V A Sbjct: 959 EGYSLKEAVMTAARQRMRPIIMTSLAFGLGVVPLFLASGPGSGSQNAIGTSVVGGVVSAT 1018 Query: 810 SSSIFIAAPILLFIY 824 IF ++I Sbjct: 1019 LLGIFFIPMFYIWIR 1033 Score = 47.4 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 41/419 (9%), Positives = 103/419 (24%), Gaps = 27/419 (6%) Query: 107 FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166 + + ++LN ++ + + I + + +E Sbjct: 644 DENTAQAVAGRAMGYFFTQLNEAQVFAIVPPAITELGNASGFDLMIQDNGNLGHDGLLEA 703 Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGE-QDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225 + ++ + + + + + ++ S Sbjct: 704 RNMLLGMAAQNDQVAGVRPNGQEDSPQLKVNINQEQAAAYGLSLGNINSVISTAWGSSYV 763 Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285 F R +V + G + + K + A E Sbjct: 764 NDFIDRGRI----------KRVFVQGEASSRTNPDDIGKWYVRNEMGDMISFNAFSTSEW 813 Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345 + L + A + Sbjct: 814 QSGSPRLTRYNSLPSMNIQGSAAPGLSTG------------EAMSSMEAMIEKLPEGIGY 861 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 + S + A+ +V + L + I L V+ + Sbjct: 862 EWTG-MSLEEQKSGAQAPMLYALSILVVFLCLAALYESWSIPFSVLLVIPLGVLGAVIFT 920 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G + G++ +GL+ + IL+ E +E + S+ ++ + I Sbjct: 921 WLRGFANDIYLQVGLLTVVGLSAKNAILIIEFAKEHQEEGYSLKEAVMTAARQRMRPIIM 980 Query: 466 SNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521 +++ + V LF G G+ ++ ++ + I + I+I K Sbjct: 981 TSLAFGLGVVPLFLASGPGSGSQNAIGTSVVGGVVSATLLGIFFIPMFYIWIRSVFPHK 1039 >gi|254701112|ref|ZP_05162940.1| Acriflavin resistance protein [Brucella suis bv. 5 str. 513] gi|261751645|ref|ZP_05995354.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 5 str. 513] gi|261741398|gb|EEY29324.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 5 str. 513] Length = 1046 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 78.6 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E++ I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 62.8 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 85/267 (31%), Gaps = 18/267 (6%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+A + V+P+AV G + S G Sbjct: 947 VLERESGKSAIEAAASAARLRFHPIVMTSLAFILGVVPLAVSTGAGSASRHSIGT----G 1002 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831 ++ ++ FI P+ + + Sbjct: 1003 VIGGMLAATFI--PMFYSLIARKPPKK 1027 Score = 41.6 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 60/537 (11%), Positives = 137/537 (25%), Gaps = 60/537 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGLA + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFHPIVM 973 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++ ++ V L + + +I A + + I R K Sbjct: 974 TSLAFILGVVPLAV--STGAGSASRHSIGTGVIGGMLAATFIPMFYSLIARKPPKKH 1028 >gi|254038431|ref|ZP_04872489.1| multidrug efflux system protein [Escherichia sp. 1_1_43] gi|226840055|gb|EEH72076.1| multidrug efflux system protein [Escherichia sp. 1_1_43] gi|332345221|gb|AEE58555.1| inner membrane protein BpeB [Escherichia coli UMNK88] Length = 1034 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V ++ V + +E +G+ + + Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291 Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T + ++ ++ P + I + + + + + + Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + + ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|312968403|ref|ZP_07782612.1| inner membrane protein [Escherichia coli 2362-75] gi|312286621|gb|EFR14532.1| inner membrane protein [Escherichia coli 2362-75] gi|320194752|gb|EFW69382.1| RND efflux system, inner membrane transporter CmeB [Escherichia coli WV_060327] gi|323189122|gb|EFZ74406.1| inner membrane protein [Escherichia coli RN587/1] Length = 1034 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIQEVVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I++ + + + I + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|170693462|ref|ZP_02884621.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia graminis C4D1M] gi|170141617|gb|EDT09786.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia graminis C4D1M] Length = 1064 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 66/571 (11%), Positives = 152/571 (26%), Gaps = 38/571 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+ + ++P+ P Sbjct: 8 RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPAVQ---------ISATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 V + ++ S L + ITL+FA + +V LQ Sbjct: 54 AKTVENTVTQVIEQSMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L ++ T +++ + + + + + D + + Sbjct: 114 ATPLLPQAVQQLGTKVTKSSSSFLLVMAFVSEDGSMNKYDLANYVASNVQDPVSRIDGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + D ++L T + N G G Q Sbjct: 174 TVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVQSALQAQNVQVAGGSLGGTPSVPGQVLQA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + + + Sbjct: 233 TITEATLL-------------NTPEQFSNILLKVNPDGSQVRIKDVGRVELGGENYNFDT 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T + L + S Sbjct: 280 KYNGQPTAGFGIQLATGANALATAKAVRAKVDELSKYFPHGLVVKYPYDTTPFVRLSIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A++S++G ++ S+ G+V Sbjct: 340 VVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVMSVVGFSINTLSMFGLV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + V + F Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPRDATRKAMDQITGALVGVALVLSAVFVPVAFS 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG R F++T+ ++++S+ A+ + A+ I +K I Sbjct: 460 GGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKGFFGW 514 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHG 568 F ++R S L + Sbjct: 515 FNRTFNKSRDKYHSGVHHVIKRSGRWLIIYM 545 Score = 79.3 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V + + + +++A + + ++++ Sbjct: 258 SQVRIKDVGRVELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRAKVDELSKYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + R I + + ++ + + + +++ + L + + + Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T ++ G N ++ ++ IG V+D +VV + + + +S RD K++ Sbjct: 378 GTFAVMSVVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPRDATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G V ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492 Score = 71.3 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 67/163 (41%), Gaps = 6/163 (3%) Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 + + IS + + + + ++ W I + L + L L G+E ++ + Sbjct: 871 QAPILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGL 930 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 LT +G S + +++ + R+ + + + ++ L + TS+A + V+P+ Sbjct: 931 LTTVGLSAKNAILIVEFARE--LQQSEGMGPIEAALEAARLRLRPILMTSLAFILGVMPL 988 Query: 787 AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 A+ G + + + G++ A +IF+ + I Sbjct: 989 AISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 Score = 56.6 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 67/524 (12%), Positives = 140/524 (26%), Gaps = 36/524 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I +I +GLL + P L G + Sbjct: 536 RSGRWLIIYMVVIFAVGLLFV------KLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + L + S G Q + + D +++ +KV + Sbjct: 590 LKDVSDYLLNGEKAIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHADEKVQALVGR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + + + + ++ A +++ R +G++ Sbjct: 650 LFMHFGSYKGALVYPVNPPSIPELGTAAGFDFELQDRAGVGHAKLMEARNMLLGMAAQDP 709 Query: 182 Q----RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 R Q D + L + + + S V D+D Sbjct: 710 TLAQVRPNGLNDTPQFKVNIDHEKAAALGVSLSAI-----DQTFSIAWASQYVNNFLDTD 764 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 G KV + G + G + + Sbjct: 765 GRI----KKVYMQGDAQFRMKPEDLNAWY-------VRNTGGGMVPFSSFASGEWTYGSP 813 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 R + + + +G ++A + ++ER G Sbjct: 814 KLERYNGISAVEIQGAAAAGKSTGQAMTAMEALVAKLPAGIGYEWTGLSLQERQSG---- 869 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S I +V + L + + L VI L +L G + Sbjct: 870 --SQAPILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQ 927 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G++ +GL+ + IL+ E RE + + + I +++ ++ + Sbjct: 928 VGLLTTVGLSAKNAILIVEFARELQQSEGMGPIEAALEAARLRLRPILMTSLAFILGVMP 987 Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 L G + + +L + F AI ++ + I Sbjct: 988 LAISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 >gi|21231813|ref|NP_637730.1| preprotein translocase subunit SecD [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768061|ref|YP_242823.1| preprotein translocase subunit SecD [Xanthomonas campestris pv. campestris str. 8004] gi|21113527|gb|AAM41654.1| protein-export membrane protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573393|gb|AAY48803.1| protein-export membrane protein [Xanthomonas campestris pv. campestris str. 8004] Length = 622 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 144/520 (27%), Positives = 251/520 (48%), Gaps = 39/520 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDL GG H ++VD+ + L+ +++++R+ L+ I Sbjct: 111 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRI 170 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I +S + + + + L + + IS+ Sbjct: 171 AYRSVERRGDNSIQVSLGEGASADAARTALAK------------SQPTLTYDVSGQTISV 218 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + + Q+ S AIEQ++ +R R++ +G+SE TIQR G RI+++LPG QD + ++L Sbjct: 219 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 278 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + F V+ N++ G L+ + ++G + A+ Sbjct: 279 IGATASLEFRAVVEGNAEDAVRSGTIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASV 338 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302 + D V + G R T + + + Sbjct: 339 SNDQNGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 398 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 A GK + A LA +L++GSL ++ VEE +G LG++++ Sbjct: 399 EALSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 458 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A+V V ++F V Y +G + ++ N+++ +A++SL GAT+TLP AG+ L Sbjct: 459 RGVTAVVFSFVFTLVFFTVYYRMFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLAL 518 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG Sbjct: 519 SVGLSVDANVLINERIREELRLGVPPKSAIVAGYEKAGGTILDANLTGLIVGVALYAFGT 578 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G ++GFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 579 GPLKGFALTMIIGIFASMFTAITVSRALAVLIYGSRKKLK 618 Score = 151 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 94/254 (37%), Gaps = 4/254 (1%) Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + V+ + + E + + +Q Sbjct: 371 LMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLEKTEAENLAKL 430 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 K + ++GP + E + +G+ V+ S + L++ + ++ F Sbjct: 431 LKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVFFTVYYRM-FGAITSVA 489 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L+ ++ + +LFG L A + +G SV+ V++ +R+R+ ++L + + Sbjct: 490 LLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRL---GVPPKS 546 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 I + G + ++ I + + +G + FA+ M GI + ++I ++ + Sbjct: 547 AIVAGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRAL 606 Query: 820 LLFIYDWRAKNARI 833 + IY R K + Sbjct: 607 AVLIYGSRKKLKSV 620 >gi|331005920|ref|ZP_08329268.1| Protein-export membrane protein SecD [gamma proteobacterium IMCC1989] gi|330420276|gb|EGG94594.1| Protein-export membrane protein SecD [gamma proteobacterium IMCC1989] Length = 616 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 151/525 (28%), Positives = 275/525 (52%), Gaps = 35/525 (6%) Query: 32 LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88 P + + + LGLDL GG H ++EVD V+ L+ EL+ L++ + Sbjct: 96 APTTPQWLVDLGASPMKLGLDLSGGVHFLMEVDTKAVVSTRLESMPIELKRQLRQAKLRY 155 Query: 89 FSMRQI-QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE---IS 144 S+ N+I F+ + ++ + + + L+ + E + I Sbjct: 156 KSVDINANNQIVAKFSTADVRDQAMPV----FRAALADSSALANPFLIERSDEADSFYIR 211 Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204 +++ I + +A+ Q++ +R R++++G+SE +QR G RI+++LPG QD + ++ Sbjct: 212 ASMTEQAISDIEDYAVGQNLTTLRNRVNELGVSEPIVQRQGRTRIVVELPGVQDTAEAKR 271 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ---YLVEDKVEISGIHLNGATANF 261 ++G TA + F ++ + + + ++ + I+G +++GA A F Sbjct: 272 IIGKTANLEFRLEAEPDASLASKELFEYRDEGEQLATGGAYLQRRAVINGTNVSGAQAGF 331 Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKP---------------------LAVVLDG 300 D ++ +P V+I+ D G + TR N+G+ V + Sbjct: 332 DAESSQPNVNITLDSDGGAKMHRGTRKNVGRRLGVLFIEYKTRTQDANGNILAKPVQIIE 391 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + + Q+ + QI+G + A LA +LRAG+L + V+E +G LG ++ Sbjct: 392 KRIISLATIQSALNANFQITGLGSAAEASELALLLRAGALAAPMTFVQESTIGPSLGEEN 451 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 I G ++ GL L+++FM+V Y +G+ A+ ++ N++L A++SL GATLTLP IAGI Sbjct: 452 IRLGVLSVQLGLALVLIFMLVYYRLFGIAANIALAANLVLLTAIMSLFGATLTLPGIAGI 511 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VL +G+AVD+N+L+ RI+EE + S ++ GF RA++TI D+N T LI V+L+ Sbjct: 512 VLTVGMAVDANVLIFSRIKEELKNGLSPQGAISAGFDRAFTTILDANFTTLIVAVILYGI 571 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 G G ++GFA+T+ + IL SMFTAI RA++ + +++K++ I Sbjct: 572 GTGPIKGFAVTLAIGILTSMFTAIVGTRAVVNLMYGSRQVKTLSI 616 Score = 140 bits (353), Expect = 6e-31, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 96/246 (39%), Gaps = 4/246 (1%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + + +QI + + ++ L G A + + Sbjct: 369 IEYKTRTQDANGNILAKPVQIIEKRIISLATIQSALNANFQITGLGSAAEASELALLLRA 428 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + T +GP + E IR G++ V + +LI++ + ++ F + A L Sbjct: 429 GALAAPMTFVQESTIGPSLGEENIRLGVLSVQLGLALVLIFMLVYYRL-FGIAANIALAA 487 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 ++ +LFG L +A ++ +G +V+ V+++ R+++ +K +S + I Sbjct: 488 NLVLLTAIMSLFGATLTLPGIAGIVLTVGMAVDANVLIFSRIKEELK---NGLSPQGAIS 544 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + + + I + + G I FA+ +A GI+ + ++I ++ Sbjct: 545 AGFDRAFTTILDANFTTLIVAVILYGIGTGPIKGFAVTLAIGILTSMFTAIVGTRAVVNL 604 Query: 823 IYDWRA 828 +Y R Sbjct: 605 MYGSRQ 610 >gi|319944505|ref|ZP_08018776.1| protein-export membrane protein SecF [Lautropia mirabilis ATCC 51599] gi|319742218|gb|EFV94634.1| protein-export membrane protein SecF [Lautropia mirabilis ATCC 51599] Length = 314 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 162/303 (53%), Gaps = 3/303 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L I FMR ISI+F + ++ LFT GLN ++F GG + +P D Sbjct: 1 MELFKIRRDIPFMRHVTILNAISIVFFLLAVLFLFTRGLNLSVEFTGGTVMEFSYAQPAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L R +E L + QNF ++ L+RL + G S A+ E V + + P Sbjct: 61 LGKTRQAIEELGFSEPQVQNFGTSRDVLIRLPLKEGVSAAKQA--EQVLAALKQHDPSVE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ E VGP++ +EL G + +++ ++IY+ +RF+W F + I + D+ LGF Sbjct: 119 LRRNEFVGPQVGQELATSGAMALLVVIAGIVIYLAVRFEWKFGVAGIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769 FA F EF+L+ +AAVL ++GYSVN+ V+++DR+R+ + + +++ ++D +I T Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVIIFDRVREKFRERHARNMTTAQVLDHAITTTT 238 Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 R+V T + + VL M +GG + F++ +A GI SSIF+AA I++ + R Sbjct: 239 SRTVITHTSTLMMVLSMLFFGGPTLHYFSLALAIGICFGVYSSIFVAAAIVMRLGLKRED 298 Query: 830 NAR 832 + Sbjct: 299 LVK 301 >gi|111023849|ref|YP_706821.1| preprotein translocase subunit SecF [Rhodococcus jostii RHA1] gi|110823379|gb|ABG98663.1| protein-export membrane protein [Rhodococcus jostii RHA1] Length = 410 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 70/296 (23%), Positives = 135/296 (45%), Gaps = 12/296 (4%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 R + ++ + S+ + G GIDF+GG ++ A V+ + V Sbjct: 49 GRRRFYYILTGTIVLISLLSILVRGFTLGIDFEGGSRIQFPAGGGVETAQVEEVYSEALG 108 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKITEIVPLSTIQNTEIVG 658 D G + AQ + + + K ++ + + V Sbjct: 109 MDPVSVQTVGSGSSATVQIRSEALDAAQVVTLQNALYDEFQPKDSDGNVSKNVISVADVS 168 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 ++ +K ++ +++ + + +YI +RF+ A+ AI L DI T G ++L G E Sbjct: 169 ETWGGQITQKALIALLVFLVIVSVYIAVRFERDMAIAAIVALFFDIAVTAGVYSLVGFEV 228 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTS 776 V +LT++G+S+ D VVV+D++ +N + L+ T ++ + + +IN+TL RS+ T+ Sbjct: 229 TPATVIGLLTILGFSLYDSVVVFDKVEENTRGILHLTRRTYAEQANLAINQTLMRSINTT 288 Query: 777 MAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + + + VL + V G + A+ GI+V A SSIF A P+L+ + + Sbjct: 289 LISVLPVLALMVVAVWMLGVGTLKDLALVQLVGIIVGAYSSIFFATPLLVTLKERW 344 >gi|82545637|ref|YP_409584.1| integral transmembrane protein [Shigella boydii Sb227] gi|81247048|gb|ABB67756.1| integral transmembrane protein [Shigella boydii Sb227] Length = 1034 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 7/178 (3%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 + TS+A + VLP+A+ G + I + G+V A +IF + I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFLPVFFVVIRR 1030 >gi|332098814|gb|EGJ03771.1| inner membrane protein [Shigella boydii 3594-74] Length = 1034 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 69/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + + ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTNDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 7/178 (3%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 + TS+A + VLP+A+ G + I + G+V A +IF + I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFLPVFFVVIRR 1030 >gi|307611015|emb|CBX00649.1| hypothetical protein LPW_23581 [Legionella pneumophila 130b] Length = 1052 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 70/582 (12%), Positives = 169/582 (29%), Gaps = 40/582 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G+L ++++P +P + ++ Sbjct: 10 RPVFATVISIIIVMVGVLS-----YFNLPIEQYPQVVPPT-------------IQVQASY 51 Query: 63 DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + + + + + E + + + ++T++F + V Sbjct: 52 PGANAKTVAETVATPIEQEVNGVENMLYMDSQSTDDGQMRLTITFKLGTDLDQAQVLVQN 111 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + V KL + ++ + T +++ I D+I Sbjct: 112 RVAVVEPKLPEEVRRLGITTNKNSPDLMLVVNLYSPNGQYDQTYIGNYAILHIRDKIRRI 171 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E L + +P + T + N ++ ++ Sbjct: 172 EGVGNVLVFGASEYAMRLWLNPDLMNTFNLTANDVLAAVRAQNVQVASGKLNLQPQKNQY 231 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 G +Y +E K + K + I G R + Sbjct: 232 GFEYHIETKGRL-------------VKKEEFENIIVKSGEGGRIVRLKDIGRVELGTQNY 278 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T + + P + Sbjct: 279 LTKGYLDKYPAVALPIYQRPGTNALATAQEIIKTMKTIAKAFPPGITYDIAYNPTLFVQQ 338 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+ + + + + +I +++I T A++ +G +L ++ Sbjct: 339 SIDAVFHTIYEAIALVVLVILIFLQTWRASAIPVVAIPVSLIGTFAVMQAIGFSLNYLTL 398 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ VD I+V E + + + + + S + + + + Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERNIQAGMNPRDAARKTMTEVGSALVAMGLVLIAVFLPT 458 Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 F G + F T+ ++ IS+F ++++ M + + ++I L+ + Sbjct: 459 VFLEGISGRFYQQFGTTLAVATAISVFVSLTLTPTMAVLL-LRAHHETIKQEGLAWWRKP 517 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576 F R + YGI Sbjct: 518 IYGFLHGFNRLMEGFSRQYGKLVATLTRKTALMTIAYGIFIS 559 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 45/446 (10%), Positives = 129/446 (28%), Gaps = 19/446 (4%) Query: 402 LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461 + + + T++ +G + +E R + + + S Sbjct: 607 ILAIPGIAHTVSFTGFSGATFTNSSNAGAIFTPLLSFQERQRMGINYND-ILKRLRQELS 665 Query: 462 TIFDSNITAL-------IATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMM 511 TI ++ I + I F G + + + +M + + ++ Sbjct: 666 TIKEALIVVIPPPPVRGIGNAGGFKMMLQDRGGRGLDVLMEAAATMVNSANQEKATTSVF 725 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571 F + ++ L + + G F+ + Sbjct: 726 TFFENSTPRLHLKLDREKVERLNVPYANVVEALEVYLGSVFINEFNYLGRTFRVIAQADS 785 Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 L + V ++ ++ + + LQ + Sbjct: 786 EYRHTEDDILRIKVKSNNGDMVPIGSVAQIENTVAPSRMPRFNLYPAIDLQGDVAPGYSS 845 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690 L ++K +P + + + ++ + I + + + +++ W Sbjct: 846 DEALVTMEKLAQNNLPDGIGYEWTEI-AYQQKMVGNTALMAFTLGVIFIFLVLAAQYESW 904 Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 L I + + + ++ + G+E N+ L LIG + + +++ + R +L Sbjct: 905 SLPLAVILIVPMCLFSSMLGVKILGMENNIMTQIGFLVLIGLASKNAILIVEFAR---QL 961 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807 + ++ L + TS A + V P+ + G + + + + G++ Sbjct: 962 ENRGYNLWKAAIQAAKLRLRPILMTSFAFILGVFPLIISTGAGAEMRRALGVAVFSGMLG 1021 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + + I ++ Sbjct: 1022 VTFFGLIFTPLFYVLISRLSRYKRKL 1047 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 69/203 (33%), Gaps = 9/203 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + + ++ + K + N + + + + + + +LI++ Sbjct: 304 ATAQEIIKTMKTIAKAFPPGITYDIAYNPTLFVQQSIDAVFHTIYEAIALVVLVILIFLQ 363 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W + + + + + T G N + ++ IG V+D +VV + M Sbjct: 364 ---TWRASAIPVVAIPVSLIGTFAVMQAIGFSLNYLTLFGLVLAIGIVVDDAIVVVENME 420 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802 +N++ ++ RD K++ E V + LP G F +A Sbjct: 421 RNIQA---GMNPRDAARKTMTEVGSALVAMGLVLIAVFLPTVFLEGISGRFYQQFGTTLA 477 Query: 803 FGIVVAASSSIFIAAPILLFIYD 825 ++ S+ + + + + Sbjct: 478 VATAISVFVSLTLTPTMAVLLLR 500 >gi|311894860|dbj|BAJ27268.1| putative preprotein translocase SecF subunit [Kitasatospora setae KM-6054] Length = 373 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 139/310 (44%), Gaps = 14/310 (4%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L ++ F+ R IS + + + L GL+ GI+FKGG V + Sbjct: 8 HRLYQGEVSFDFVGKRKIWYSISAVIVLVAGIGL-AMGLHLGIEFKGGSVYTVHKPG-LS 65 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S + + + + + + + +++ Q K+ I Sbjct: 66 ASQAKDTADKIIGSNTALAQTTDKGDVRIQVSAQESIPATT-----FTKEFSQAIGVQEQ 120 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 N +++GP ++ +K + G+I+ + + IY+ I F+W A+ A+ LI D+ T+G Sbjct: 121 DINAQVIGPSWGADISKKALTGLIVFMVLVTIYMAIAFEWRMAVAALVALIHDLLITIGV 180 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINET 768 +AL G E V LT++GYS+ D VVV+D +++N + T ++ + + +N+T Sbjct: 181 YALVGFEVTPGTVIGFLTILGYSLYDTVVVFDTVKENTRGLTKQSRRTYSEAANHGLNQT 240 Query: 769 LGRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 L RS+ T++ A + V + GG + ++ + G+ A SSI +A P+L + Sbjct: 241 LVRSINTTVVALLPVSALLFIGGGFLGAGTLNDISLALFIGLAAGAYSSICVATPLLAQL 300 Query: 824 YDWRAKNARI 833 + + Sbjct: 301 KEQAPDMKAL 310 >gi|91785071|ref|YP_560277.1| RND efflux hydrophobe/amphiphile efflux-1 family protein [Burkholderia xenovorans LB400] gi|91689025|gb|ABE32225.1| RND family Hydrophobe/amphiphile efflux pump [Burkholderia xenovorans LB400] Length = 1069 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 66/575 (11%), Positives = 155/575 (26%), Gaps = 46/575 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+ + ++P+ P + + Sbjct: 8 RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPA-------------VQISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 ++ + + + S + ITL+FA + +V Sbjct: 50 PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L ++ T +++ + + + + + D + Sbjct: 110 KLQLATPLLPQAVQQLGTKVTKSSSSFLLVMAFVSEDGSMNKYDLANYVASNIQDPVSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + D ++L T + N G G Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVQTALTAQNVQVAGGSLGGTPSVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + + + + + + I Sbjct: 229 VLQATITEATLL-------------NTPEQFGNVLLKVNPDGSQVRIKDVGRIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L + Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATATAVRAKVAELSKYFPHGLVVQYPYDTTPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A++ L+G ++ S+ Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMGLVGFSINTLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMQEEGLSPRDATRKAMDQITGALVGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F++T+ ++++S+ A+ + A+ I +K I+ + Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIEKGHQEKTTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 F ++R S L + Sbjct: 511 FFGWFNRTFNKSRDKYHSGVHHVIKRSGRWLIIYM 545 Score = 79.3 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V + + + +++A + ++++ Sbjct: 258 SQVRIKDVGRIELGGENYNFDTKYNGQPTAGFGIQLATGANALATATAVRAKVAELSKYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + R I + + ++ + + + +++ + L + + + Sbjct: 318 PHGLVVQYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T L G N ++ ++ IG V+D +VV + + + +S RD K++ Sbjct: 378 GTFAIMGLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMQEEGLSPRDATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G V ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 77/221 (34%), Gaps = 8/221 (3%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + ++G ++ PG S Q + + + Sbjct: 816 ERYNGISAVEIQGAAAPGKSTGQAMTAMEALVAKLPAGVGYEWTGLSLQERQSGSQAPIL 875 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + +++ + + + W I + L + L L G+E ++ +LT Sbjct: 876 YGISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 +G S + +++ + R+ + + + ++ L + TS+A + V+P+A+ Sbjct: 933 TVGLSAKNAILIVEFARE--LQQSEGMGPVEAALEAARLRLRPILMTSLAFILGVMPLAI 990 Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 G + + + G++ A +IF+ + I Sbjct: 991 SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 Score = 55.9 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 67/520 (12%), Positives = 137/520 (26%), Gaps = 28/520 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I +I +GLL + P L G + Sbjct: 536 RSGRWLIIYMVVIFAVGLLFV------KLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + L + S G Q + + D +++ KV + Sbjct: 590 LKDVSDYLLNTEKSIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHSDQKVQALVGR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L+ I + + D + E + + + + + Sbjct: 650 LFMHFGSYKNA-LVYPVNPPSIPELGTAAGFDFELQDRAGVGHEKLMEARNMLLGMAAKD 708 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 L R Q + + +S + S V D+DG Sbjct: 709 PTLAQVRPNGLNDTPQFKVDIDHEKASALGVSLSAIDQTFSIAWASQYVNNFLDTDGRI- 767 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 KV + G + + + R Sbjct: 768 ---KKVYLQGDAPFRMKPEDLNAWY-------VRNGAGNMVPFSSFASGTWTYGSPKLER 817 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + +G ++A + ++ER G S Sbjct: 818 YNGISAVEIQGAAAPGKSTGQAMTAMEALVAKLPAGVGYEWTGLSLQERQSG------SQ 871 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 I +V + L + + L VI L +L G + G++ Sbjct: 872 APILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 +GL+ + IL+ E RE + + + I +++ ++ + L Sbjct: 932 TTVGLSAKNAILIVEFARELQQSEGMGPVEAALEAARLRLRPILMTSLAFILGVMPLAIS 991 Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 G + + +L + F AI ++ + I Sbjct: 992 NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 >gi|262164935|ref|ZP_06032673.1| protein-export membrane protein SecD [Vibrio mimicus VM223] gi|262027315|gb|EEY45982.1| protein-export membrane protein SecD [Vibrio mimicus VM223] Length = 612 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 152/512 (29%), Positives = 261/512 (50%), Gaps = 25/512 (4%) Query: 25 NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84 + S+ ++ + + I LGLDLRGG +L VD D D ++ L+ E Sbjct: 113 TYSYVSVAPKWLDELGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAE 172 Query: 85 GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144 + S++ + N +F + + V +LQ + + + + Sbjct: 173 RLRGVSVQAVGND---AFDVKTQQPQALNHVRQYLQ--------ENYRGWDIRQGSDHLQ 221 Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204 + SQ N + + I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + Sbjct: 222 VQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKN 281 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 ++G TA ++F++ F L D +G ++ + +SG H+ A A D Sbjct: 282 VIGATASLAFYEAKS--PTDARSFDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNM 339 Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313 V G + V R+ + + + Q+ Sbjct: 340 GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNAHGETVRSERVISVATIQSQL 399 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 + +I+G ++E A LA +LRAGSL + IVEER +GA LG ++I G A+ GL Sbjct: 400 GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLA 459 Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432 + + FM + Y + G VA+ ++ +N+ L L++LL A LTLP IAG+VL +G+AVD+N+ Sbjct: 460 MTLTFMALWYRRLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 519 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 L+ ERIR++ + ++ ++D GF A+STI D+NIT +I V+L+ G G ++GFA+T+ Sbjct: 520 LIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTL 579 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 GL +L SMF+ + RA++ + + + Sbjct: 580 GLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + + TI +G + E I G + + L ++ + + Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLAMTLTFMALWY 469 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L++++ LG AL G L +A ++ +G +V+ V++++R+R Sbjct: 470 R-RLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + +F ID + + ++ I+ + + G I FA+ + G++ Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + S +F + ++ ++ + Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608 >gi|309703685|emb|CBJ03026.1| acriflavin resistance protein F [Escherichia coli ETEC H10407] Length = 1034 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNGDEN 641 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V ++ V + +E +G+ + + Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291 Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T + ++ ++ P + I + + + + + + Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + + ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPISVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|110598306|ref|ZP_01386581.1| SecF protein [Chlorobium ferrooxidans DSM 13031] gi|110340114|gb|EAT58614.1| SecF protein [Chlorobium ferrooxidans DSM 13031] Length = 311 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 82/304 (26%), Positives = 141/304 (46%), Gaps = 11/304 (3%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 I F+ R G S++ + L GLNYGIDF+GG ++ + ++ +D+ Sbjct: 1 MRIFHKTNFDFIGFRKIAYGFSLILLASGLISLAVKGLNYGIDFRGGSEVLIRFDKNIDV 60 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 S VR+ L+ I Q + + + L I Sbjct: 61 SAVRAVLDEAGISGSLKQYGL---DRSFLFSTVFSGETNELKSLVSGAFDARLKNNPHEI 117 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + VGP I+ +L + ++ S +A+L+Y+ IRF+ FA + + DI LG F Sbjct: 118 VRIDAVGPSIASDLKWSALKALLASLVAILLYVGIRFEIKFATAGVIAIFHDILSVLGLF 177 Query: 712 A-------LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 + +E + + +AA LT+ GYS+ D VVVYDR+R+ ++ + + ++S Sbjct: 178 SLLGGLFDFMPLEMDQSIIAAFLTIAGYSITDTVVVYDRIRERIR-GQKPADYERIFNES 236 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 +N+TL R++ TS +SV + ++ G I FA + GI++ SSIF+AAP++ Sbjct: 237 MNQTLSRTIITSGTVLLSVFVLFIFAGPAIRGFAFAVFCGILIGTYSSIFVAAPLVFDWL 296 Query: 825 DWRA 828 Sbjct: 297 RLSK 300 >gi|126175450|ref|YP_001051599.1| preprotein translocase subunit SecD [Shewanella baltica OS155] gi|125998655|gb|ABN62730.1| protein-export membrane protein SecD [Shewanella baltica OS155] Length = 604 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 165/527 (31%), Positives = 274/527 (51%), Gaps = 34/527 (6%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 + ++ P L S+ PS + I LGLDLRGG +L+VD D + Sbjct: 94 TLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGE 153 Query: 72 MYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 D LR F++++ I S+ Q N++ L+ D+ + + + Sbjct: 154 ALVDSLRQFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQ------- 206 Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 L T + I LSQ ++ + ++Q+++++R RI+++GI+E+ +QR G HRI Sbjct: 207 ----LSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGDHRIR 262 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 I+LPG QDP+ + ++G TA ++F +V L D G V + Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLNDKSGKPIYVSRTPVLG 317 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306 G H+ A A+ V+I+ D +G ++ E +R NIGKP+A Sbjct: 318 GDHIVDARASLGEMGM-AEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAK 376 Query: 307 --------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 Q+ + +I+G T + A LA +LRAGS+ + IVEER +G LG+ Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417 ++I G A+ G+ + +LFM + Y + G VA+ ++ N+++ LL+L+ A LTLP I Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG+VL +G+AVD+N+L+ ERI+++ ++ +S ++D GF A+STIFD+N T +I VVL Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 + G G ++GFA+T+GL +L SMFT I RA++ + + + Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603 Score = 121 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G + + S + + + ++ L G Q Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I G + + L+++ + ++ Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R++ +K Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID + + I+ + + G I FA+ + G++ + Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + ++ +Y A Sbjct: 581 TGIFASRALINLVYGRDASR 600 >gi|325928043|ref|ZP_08189256.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Xanthomonas perforans 91-118] gi|325541541|gb|EGD13070.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Xanthomonas perforans 91-118] Length = 1086 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 68/685 (9%), Positives = 172/685 (25%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G+L + ++PS P Sbjct: 8 RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPAVA---------IAANYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ L + ITL+F + + +V L Sbjct: 54 AQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQNKLSL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + + + + S + + I E Sbjct: 114 ATPLLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRVEGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G + Sbjct: 174 DTTLFGSQ-YAMRVWMDPNKLSNFSLTPVDVRNAIQAQNAQISAGQLGALPAVANQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + + + I Sbjct: 233 TITAQTRL-------------KTAEQFENILLRTQSDGSQVRLGDVARIELGSESYNTVG 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T+ P S Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRISIEQ 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G T+ ++ +V Sbjct: 340 VVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + Q S + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEQLSPKDATRKSMDQISGALIGVALVLAAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------IDINP 527 G R F+IT+ ++ +S+ A+ + A+ +++ + Sbjct: 460 SGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVHKGHGLATTGFFGWFNRLF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + + + + L ++ + + +G + + V Sbjct: 520 DRGNTGYQGVVRHMLGKGWRYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLVQLPP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ ++ + Q F V G ++ Sbjct: 580 GATNARTSEVLKQVEHHFLVDQKDSVAGVFAVTGFSFAGSGQNVGFAFVKLRPWDERTGK 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 ++ + + + Sbjct: 640 GQSVTDVAARAGAFFAGIRDAKVFA 664 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 89/243 (36%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + L +++ R ++ ++ + Sbjct: 258 SQVRLGDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P R I + + ++ + + + + +++ + + L + + + Sbjct: 318 PPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + A++ IG V+D +VV + + + +S +D KS+ Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEQLSPKDATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 ++ G + ++ +PMA + GS F+I + + ++ ++ + + Sbjct: 436 DQISGALIGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 52.8 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 68/225 (30%), Gaps = 7/225 (3%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + A V + + + N L Sbjct: 776 PYRMNPQDIDHWFVRNSAGTMVPFNAFATASWQSGSPRLERYNSVPSMEILGMALPGAAS 835 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 S +++E K+ + + + + G++ + I L + Sbjct: 836 SGEAMQIVEAAAAKLPPGIGF----EWTGLSRQEKASSGQTGLLYSVSILIVFLCLAALY 891 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W I + L + TL L ++ +LT IG + + +++ + R+ Sbjct: 892 ESWAIPFSVILVVPLGVFGTLLAAMLTWKMNDVYFQVGLLTTIGLASKNAILIVEFARE- 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 L+ S ++ L + TS+A + V+P+ + G+ Sbjct: 951 --LHEGGKSLVAAALEAARMRLRPILMTSLAFILGVVPLVLTSGA 993 >gi|260425392|ref|ZP_05779372.1| AcrB protein [Citreicella sp. SE45] gi|260423332|gb|EEX16582.1| AcrB protein [Citreicella sp. SE45] Length = 1045 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 72/585 (12%), Positives = 156/585 (26%), Gaps = 41/585 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +GLL L + ++P P + + Sbjct: 8 RPVFAWVISILIMGVGLLSIL-----SLPVAQYPEIAPP-------------SVRVSAQY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + + + + S ITL+F + +V Sbjct: 50 PGASAETVANTVTQIIEQQMTGLDGMRYMSSSSTSAGTASITLTFESGTDPDVAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L + L ++ + ++ + + S + +D+ Sbjct: 110 KLSQATALLPETVQRQGVTVEKSSSSFFMVIGLISEDGTLEQADLSDYLNSNLVDEFSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + PS+L T A + N FG D Sbjct: 170 EGVGGAQVFGAQ-YAMRIWLHPSKLAAFEMTPADVVSAVSAQNAQISAGAFGTLPAPDGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + +S + E ++ Sbjct: 229 QLNATITAQSLLS-------------TPEDFRNIVLRAETDGGLVLLQDVADVEIGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E ++ Sbjct: 276 STIARYNGQPASGMALQLASGANALDTSERVKARIEEFSEFFPEGVNYVIPYDTTPFIAI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV V+ + + + L+ ++ + ++ T +L+L G T+ ++ Sbjct: 336 SIHEVQKTLIEAIVLVFFVMLLFLQNFRATLIPTLAVPVVILGTFGVLALAGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + V Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERIMEEEGLSPREATRKSMGQITGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FF G R F+IT+ ++ +S+ A+++ A+ +++ K P F Sbjct: 456 MAFFPGSTGVIYRQFSITIVSAMALSVLVAMTLTPALCATLLKSKDAHHTKRGPAGWFNK 515 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 D + W + I L + + G Sbjct: 516 GFDKTTDGYAGTVGWLIRRPFRVLILYAALGYGMVFLFNNTPTGF 560 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 51/437 (11%), Positives = 124/437 (28%), Gaps = 27/437 (6%) Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 S+ G+V N+ + ++ + S S+ RA+ + V Sbjct: 605 SVFGVVGFSFAGQGQNMGLAFVRMKDWDERPSPAQSVQAVAGRAFPAFMGIQDAMVFPIV 664 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535 G V GF + + + ++ + + S+ N L Sbjct: 665 PPSVIELGNVSGFDFYLQAQAGQTHEQLLEARNQLLGMAAQSPILGSVRPNGLEDASQFN 724 Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ--------------- 580 I + A + + + N K Sbjct: 725 LDIDWRAAGAIGVSPTNVGNLLSVAWAGSYVNDFNDNGRIKRVYVQGSPESRATPSDLQK 784 Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 V + + ES G ++G ++ G S + Sbjct: 785 WRVRNSNGDLVPFANFTSESWTYGPQGLTRYNGVPAMQIQGSPAEGVSTGEAMAEIERIA 844 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699 + + + +S A+ + + ++ W L + Sbjct: 845 SQLPPGYSVAWTGLSLEERDSGG----QAPLLYALSLAAIFLCLAALYESWTIPLSVMLA 900 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 + + + T+G FG + + +LT+IG + + +++ + R+ + Sbjct: 901 MPIGVLGTMGAAYWFGFDNGVFFQVGLLTVIGLTGKNAILIVEFARE---RFEAGEEILT 957 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA-SSSIFI 815 + ++ + + TS+A + V+P+ + G + + G + IF+ Sbjct: 958 AVKEAARQRFRPIIMTSLAFTLGVVPLVLSSGAGAGGRNAVGSAVLGGTITGTVLGVIFV 1017 Query: 816 AAPILLFIYDWRAKNAR 832 ++ + + K R Sbjct: 1018 PLFFVVVMRIFGRKQIR 1034 Score = 76.7 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 83/228 (36%), Gaps = 14/228 (6%) Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665 + Q G L S +E + E V +T E+ Sbjct: 281 YNGQPASGMALQLASGANALDTSERVKARIEEFSEFFPEGVNYVIPYDTTPFIAISIHEV 340 Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 + I +++ ML+++ + L + + I T G AL G N + A Sbjct: 341 QKTLIEAIVLVFFVMLLFLQ---NFRATLIPTLAVPVVILGTFGVLALAGFTINTLTMLA 397 Query: 726 VLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 ++ IG V+D +VV +R+ + +S R+ KS+ + G V ++ Sbjct: 398 MVLAIGLLVDDAIVVVENVERIMEE-----EGLSPREATRKSMGQITGALVGIALVLSAV 452 Query: 783 VLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 +PMA + GS F+I + + ++ ++ + + + + Sbjct: 453 FVPMAFFPGSTGVIYRQFSITIVSAMALSVLVAMTLTPALCATLLKSK 500 >gi|256158996|ref|ZP_05456833.1| Acriflavin resistance protein [Brucella ceti M490/95/1] gi|256254354|ref|ZP_05459890.1| Acriflavin resistance protein [Brucella ceti B1/94] gi|261221514|ref|ZP_05935795.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti B1/94] gi|265997477|ref|ZP_06110034.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti M490/95/1] gi|260920098|gb|EEX86751.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti B1/94] gi|262551945|gb|EEZ07935.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti M490/95/1] Length = 1051 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 71/565 (12%), Positives = 158/565 (27%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117 + L + E + + + I T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGIMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEKVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 80/212 (37%), Gaps = 6/212 (2%) Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + +++ +++ ++ P K + I K + Sbjct: 285 GTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEKVVH 344 Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 I + I +++ ++I + W L + + + I T + G NL + ++ I Sbjct: 345 TFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAI 404 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 G V+D +VV + + + T +S R K++ E G + + +P+A G Sbjct: 405 GIVVDDAIVVLENV--ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMG 462 Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 G + FA+ +A + ++ ++ + + Sbjct: 463 GLVGEMYKQFAVTIAISVTLSGLVALTLTPAL 494 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+A + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032 Score = 49.3 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGLA + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++ ++ V L G + + +L + F A + I R K Sbjct: 974 TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033 >gi|256112817|ref|ZP_05453738.1| transporter, hydrophobe/amphiphile efflux-1, HAE1 family protein [Brucella melitensis bv. 3 str. Ether] gi|265994259|ref|ZP_06106816.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis bv. 3 str. Ether] gi|262765372|gb|EEZ11161.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis bv. 3 str. Ether] Length = 1051 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 71/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P RL Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDRLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E++ I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 69.3 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 82/266 (30%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+ + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLTFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032 Score = 48.9 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 63/540 (11%), Positives = 140/540 (25%), Gaps = 61/540 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFADS---RFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKECTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGLA + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++T ++ V L G + + +L + F A + I R K Sbjct: 974 TSLTFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033 >gi|154250987|ref|YP_001411811.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Parvibaculum lavamentivorans DS-1] gi|154154937|gb|ABS62154.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Parvibaculum lavamentivorans DS-1] Length = 1044 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 69/690 (10%), Positives = 183/690 (26%), Gaps = 50/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I G L + Q ++++P P + + Sbjct: 8 RPVFAWVVAIAIMLAGTLSIM-----QLPIEQYPPIAPA-------------SVTVTGTY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S +TL+F + +V Sbjct: 50 PGASARTVENTVTQVIEQKMNGIDYLRYMSSTSDSSGTGTVTLTFEPEADPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ + E + + D I Sbjct: 110 KLQSALPLLPQEVQQQGVTVAKSARNFLMVIAFISTDGRINETEIADYVASHIQDPISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L+ + + ++ N G R + Sbjct: 170 NGVGEIQLFGPQ-HAMRIWIDPQKLQSYRISISDITTAIRAQNAEVSAGQLGARPAVEGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + + Sbjct: 229 QLNATVTAQTRL-------------ETPAQFENILLRVNEDGSQVRLKEVARVELGSENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E A L ++ Sbjct: 276 QTIGRYNGNPASGIAVRLASGANALDTAEAVRTKIAELEPFFPEGLEVVIPYDTTPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T A LV++V+++ + + + ++ + ++ T +L+ G T+ ++ Sbjct: 336 SINEVIKTLAEAIVLVILVMYLFLQNIRATFIPAIAVPVVLLGTFGILAAFGFTINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + S + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQITGALVGIGLVLSAVLIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524 + FF G R F++T+ ++++S+ A+ + A+ + + + Sbjct: 456 MAFFAGSTGAIYRQFSLTIVSAMVLSVIVALVLTPALCATLLKPVKNHGEEKRGFFGWFN 515 Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 + + V ++ I L + +G + V Sbjct: 516 RMFDRSGRSYDVGVRRFLAGPVRYMVVYGVIVVILGALFLRLPTSFLPDEDQGFMMTLVT 575 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 +++ ++ + + + F V G +K Sbjct: 576 TPAGASAERTLESMKLVENYFLEQEKDSAQGLFSVVGFNFAGAGQNSAMAFINLKPFDER 635 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 ++ + + +I Sbjct: 636 GTDETSAFSVAQRAMGFFGAMKDAMAFAII 665 Score = 74.3 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 83/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + + +++ + ++ Sbjct: 258 SQVRLKEVARVELGSENYQTIGRYNGNPASGIAVRLASGANALDTAEAVRTKIAELEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P R I + I + + + +++ +++ + + + + Sbjct: 318 PEGLEVVIPYDTTPFVRLSINEVIKTLAEAIVLVILVMYLFLQNIRATFIPAIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S R+ KS+ Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V + ++PMA + GS F++ + +V++ ++ + + Sbjct: 436 GQITGALVGIGLVLSAVLIPMAFFAGSTGAIYRQFSLTIVSAMVLSVIVALVLTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 60.1 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 70/208 (33%), Gaps = 9/208 (4%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + F+G + ++ PG S + + Sbjct: 814 ERFNGSSSRQIQGSAAPGVSSGDAMAEMERLMAQLPEGVGYEWTGLSYEERQAGAQAPSL 873 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + ++ + + + W + + + L + + + G+ ++ +L Sbjct: 874 YALSLLFVFLCLA---ALYESWSIPVSVMLVVPLGVLGAVLAATMTGLSNDVYFQVGLLV 930 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 IG + + +++ + + LY S D ++ L + TS+A + VLP+A+ Sbjct: 931 TIGLAAKNAILIVEFAK---SLYERGESLADATIQAARLRLRPIIMTSLAFTLGVLPLAI 987 Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSI 813 G + I + G++ A +I Sbjct: 988 ASGPGSGSQNAIGIGVMGGMISATVLAI 1015 >gi|281424589|ref|ZP_06255502.1| multidrug efflux RND transporter MexF [Prevotella oris F0302] gi|281401260|gb|EFB32091.1| multidrug efflux RND transporter MexF [Prevotella oris F0302] Length = 1062 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 68/535 (12%), Positives = 157/535 (29%), Gaps = 40/535 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +++ +I IG+L + +FPS P ++V D Sbjct: 7 RRPVLAIVVSLVIVFIGILSLF-----NLPITQFPSISPPK-----------VNVV--AD 48 Query: 62 EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 N + + L L G+ + +I + F A V Sbjct: 49 YPGANNELMIKSVLIPLEQALNGVPGMKYIESDAGNDGEGEINIVFKLGTDPNVDAINVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + +KL + + + E+ ++ D ++ Sbjct: 109 NRVSAATNKLPPAVVREGVKISREEPNILMYINLYSDDPKVDQNFLFNYADINISPELAR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + P +L + + ++ + G + + Sbjct: 169 VDGVGDLDILGTRSFAMRVWLKPDKLTAYGLSASDITDALQQQSIEASPGKLGESSGKHA 228 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 +Y+++ + + + + ++ V Sbjct: 229 QSFEYVLKYPGRYT-------------TPEEYSNIVVKSTPDGQFVRLKDVADVSLGSEV 275 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 L + I+ A L+ + Sbjct: 276 YDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDMPKGMHYELSYDISRFLD 335 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV V+F+ + + L+ ++ +++I + A+++ G TL + S Sbjct: 336 ASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLIGSFAVMNAFGITLNMIS 395 Query: 417 IAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 + +V+ IG+ VD I+V E + + ++ + I + + Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVKIAQEGLEPLEATQKAMKEISGAIVAVTLVMASVFI 455 Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 + F G G R F+IT+ I++S FTA+++ ++ I+ ++ I Sbjct: 456 PVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCALILTRERDNHIKKTW 510 Score = 95.1 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 92/248 (37%), Gaps = 6/248 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + V L V ++ DI + Q ++ + ++ + + + Sbjct: 259 QFVRLKDVADVSLGSEVYDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDM 318 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDIT 705 P + I K I + + I + + W AL + + + Sbjct: 319 PKGMHYELSYDISRFLDASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLI 378 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 + FGI N+ ++ A++ IG V+D +VV + + N+K+ + + K++ Sbjct: 379 GSFAVMNAFGITLNMISLFALVMAIGIVVDDAIVVIEAV--NVKIAQEGLEPLEATQKAM 436 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 E G V ++ +P+A GG F+I +A GIV++ +++ + + Sbjct: 437 KEISGAIVAVTLVMASVFIPVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCAL 496 Query: 823 IYDWRAKN 830 I N Sbjct: 497 ILTRERDN 504 Score = 51.6 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 10/245 (4%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V + + + + + S A K I E+ Sbjct: 789 NVKNNQDEMVPYADFLHMEKVYGMSEMTRHNLYNSAEVTGSAAAGYSSGQAIKAIEEVAA 848 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRFK---WYFALGAITTLILD 703 + + I+++ + +G +II + +Y+ + + + L IT L Sbjct: 849 STLPHGYDYDFAGITKDEVDQGNQALIIFIVCLTFVYLILSAQYENFLLPLPIITCLPAG 908 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I T F L G+E N+ A A++ LIG + V++ + ++ + S R + Sbjct: 909 ICGTFIFLKLTGLENNIYAQVAMVMLIGLLGKNAVLMVE---YAVQRHNLGKSIRAAAIE 965 Query: 764 SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820 + TS A +LP+ G I + A G++ + + + Sbjct: 966 GAAARFRPILMTSFAFIAGLLPLVFAHGAGAIGNRTIGTAAAGGMLFGTCFGLILVPGLY 1025 Query: 821 LFIYD 825 Sbjct: 1026 YIFGR 1030 >gi|54298073|ref|YP_124442.1| hypothetical protein lpp2130 [Legionella pneumophila str. Paris] gi|53751858|emb|CAH13282.1| hypothetical protein lpp2130 [Legionella pneumophila str. Paris] Length = 1050 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 70/582 (12%), Positives = 170/582 (29%), Gaps = 40/582 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G+L ++++P +P + ++ Sbjct: 10 RPVFATVISIIIVMVGVLS-----YFNLPIEQYPQVVPPT-------------IQVQASY 51 Query: 63 DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + + + + + E + + + ++T++F + V Sbjct: 52 PGANAKTVAETVATPIEQEVNGVENMLYMDSQSTDDGQMRLTITFKLGTDLDQAQVLVQN 111 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + V KL + ++ + T +++ I D+I Sbjct: 112 RVAVVEPKLPEEVRRLGITTNKNSPDLMLVVNLYSPNGQYDQTYIGNYAILHIRDKIRRI 171 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E L + +P + T + N ++ ++ Sbjct: 172 EGVGNVLVFGASEYAMRIWLNPDLMNTFNLTANDVLAAVRAQNVQVASGKLNLQPQKNQY 231 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 G +Y +E K + K + I G R + Sbjct: 232 GFEYHIETKGRL-------------VKKEEFENIIVKSGEGGRIVRLKDIGRVELGTQNY 278 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T + + P + Sbjct: 279 LTKGYLDKYPAVALPIYQRPGTNALATAQEIIKTMKTIAKDFPPGITYEIAYNPTLFVQQ 338 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+ + + + ++ +I +++I T A++ +G +L ++ Sbjct: 339 SIDAVFHTIYEAIALVVLVILIFLQTWRASVIPVVAIPVSLIGTFAIMQAIGFSLNYLTL 398 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ VD I+V E + + + + + S + + + + Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERNIQAGMNPRDAARKTMTEVGSALVAMGLVLIAVFLPT 458 Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 F G + F T+ ++ IS+F ++++ M + + ++I L+ + Sbjct: 459 VFLEGISGRFYQQFGTTLAVATAISVFVSLTLTPTMAVLL-LRAHHETIKQEGLAWWKKP 517 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576 F R + YGI Sbjct: 518 IYGFLHGFNRLMEGFSRQYGKLVATLTRKTALMIIAYGIFIS 559 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 46/446 (10%), Positives = 128/446 (28%), Gaps = 19/446 (4%) Query: 402 LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461 + + + T++ +G + E R + + + S Sbjct: 607 ILAIPGIAHTVSFTGFSGATFTNSSNAGAIFTPLLSFEERQRMGINYND-ILKRLRQELS 665 Query: 462 TIFDSNITAL-------IATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMM 511 TI ++ I + I F G + + + +M A + ++ Sbjct: 666 TIKEALIVVIPPPPVRGIGNAGGFKMMLQDRGGRGLDVLMEAAATMVNAANQEKATTSVF 725 Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571 F + ++ L + + G F+ + Sbjct: 726 TFFENSTPRLHLKLDREKVERLNVPYANVVEALEVYLGSVFINEFNYLGRTFRVIAQADS 785 Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 L + V ++ ++ + + LQ + Sbjct: 786 EYRHTEDDILRIKVKSNNGDMVPIGSVAQIENTVAPSRMPRFNLYPAIDLQGDVAPGYSS 845 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690 L ++K +P + + + ++ + I + + + +++ W Sbjct: 846 DEALATMEKLAQNNLPDGIGYEWTEI-AYQQKMVGNTALMAFTLGVIFIFLVLAAQYESW 904 Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 L I + + + ++ + G+E N+ L LIG + + +++ + R +L Sbjct: 905 SLPLAVILIVPMCLFSSMLGVKILGMENNIMTQIGFLVLIGLASKNAILIVEFAR---QL 961 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807 + ++ L + TS A + V P+ + G + + + + G++ Sbjct: 962 ENRGYNLWKAAIQAAKLRLRPILMTSFAFILGVFPLIIATGAGAEMRRALGVAVFSGMLG 1021 Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833 + + I ++ Sbjct: 1022 VTFFGLIFTPLFYVLISRLSRYKRKL 1047 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 70/203 (34%), Gaps = 9/203 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + + ++ + K + N + + + + + + +LI++ Sbjct: 304 ATAQEIIKTMKTIAKDFPPGITYEIAYNPTLFVQQSIDAVFHTIYEAIALVVLVILIFLQ 363 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W ++ + + + + T G N + ++ IG V+D +VV + M Sbjct: 364 ---TWRASVIPVVAIPVSLIGTFAIMQAIGFSLNYLTLFGLVLAIGIVVDDAIVVVENME 420 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802 +N++ ++ RD K++ E V + LP G F +A Sbjct: 421 RNIQA---GMNPRDAARKTMTEVGSALVAMGLVLIAVFLPTVFLEGISGRFYQQFGTTLA 477 Query: 803 FGIVVAASSSIFIAAPILLFIYD 825 ++ S+ + + + + Sbjct: 478 VATAISVFVSLTLTPTMAVLLLR 500 >gi|262403744|ref|ZP_06080302.1| protein-export membrane protein SecD [Vibrio sp. RC586] gi|262350248|gb|EEY99383.1| protein-export membrane protein SecD [Vibrio sp. RC586] Length = 612 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 148/512 (28%), Positives = 260/512 (50%), Gaps = 25/512 (4%) Query: 25 NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84 + S+ ++ + + I LGLDLRGG +L VD D D ++ L+ E Sbjct: 113 TYSYVSVAPKWLDNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMIDAVKDSLRAE 172 Query: 85 GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144 + +++ + N +F + + V +LQ + + + + Sbjct: 173 RLRGVTVQAVGND---AFEVKTDQTKALNHVRQYLQ--------ENYRGWDIRQGSDNLQ 221 Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204 + SQ N + + I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + Sbjct: 222 VQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKN 281 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 ++G TA ++F++ F L D +G ++ + +SG H+ A A D Sbjct: 282 VIGATASLAFYEAKS--PTDARSFDDLILEDENGRPVVLAKRPVLSGEHIVNARAGVDNM 339 Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313 V G + V R+ + + + Q+ Sbjct: 340 GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQL 399 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 + +I+G ++E A LA +LRAGSL + IVEER +GA L ++I G A+ G+ Sbjct: 400 GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLSEENIANGFAALALGMA 459 Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432 + + FM + Y + G VA+ ++ +N+ L L++LL A LTLP IAG+VL +G+AVD+N+ Sbjct: 460 MTLTFMALWYRRLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 519 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 L+ ERIR++ + ++ ++D GF A+STI D+N+T +I V+L+ G G ++GFA+T+ Sbjct: 520 LIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANVTTMITAVILYSIGNGPIQGFALTL 579 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 GL +L SMF+ + RA++ + + + Sbjct: 580 GLGLLTSMFSGVLASRALINLVWGRDTRRDVR 611 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + + TI +G +S E I G + + L ++ + + Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLSEENIANGFAALALGMAMTLTFMALWY 469 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L++++ LG AL G L +A ++ +G +V+ V++++R+R Sbjct: 470 R-RLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + +F ID + + ++ I+ + + G I FA+ + G++ Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANVTTMITAVILYSIGNGPIQGFALTLGLGLLT 585 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + S + + ++ ++ + Sbjct: 586 SMFSGVLASRALINLVWGRDTRR 608 >gi|302346846|ref|YP_003815144.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein [Prevotella melaninogenica ATCC 25845] gi|302150515|gb|ADK96776.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein [Prevotella melaninogenica ATCC 25845] Length = 1066 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 77/593 (12%), Positives = 172/593 (29%), Gaps = 45/593 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +++ +I IG+L L + +FPS P +++ + Sbjct: 7 RRPVLSIVVSLVIAFIGILS-----LSNLPITQFPSISPPK-----------VNVI--AN 48 Query: 62 EDDFVNGF-LQMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 N ++ L L G+ + ++ + F A V Sbjct: 49 YPGANNELLVKSVIIPLEQALNGIPGMKYIESNAGNDGEAELNVVFKLGTDPNVDAVNVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + +KL + + + + E+ ++ D ++ Sbjct: 109 NRVSSATNKLPAEVIREGVKISREEPNILMYINLYSDDPKVDQGFLYNYFDINISPELLR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + P ++ +T +S N G + Sbjct: 169 VDGVGDLDILGTRNYAMRVWLHPDKMIAYGLSTDDVSDALEDQNIEVSPGKLGESGGQRP 228 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 +Y+++ + + I ++ V Sbjct: 229 QVKEYVLKYPGRYTTED-------------EYKNIIIKSNKDGNIVRLKDIADVHLGSEV 275 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + I A L+ + Sbjct: 276 YDIYSTFNGRPSAAVTLKQAYGSNARNVITKVKDAMAHLQKDMPKGMHYEISYDVSRFLD 335 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV IV+F+ + + ++ ++ ++++ + + L TL + S Sbjct: 336 ASIEKVIHTLFEAFILVAIVVFIFLGDWRASIIPIMAVPISLLGSFIAMMLFNITLNMIS 395 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + +V+ IG+ VD I+V E + E +N+ S + + I ++ + Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVEISRNKLSPVEATEKAMKEISGAIIAISLVMASVFI 455 Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 + F G G R F+ITM SIL S F A+++ A+ I+ ++ + + + R Sbjct: 456 PVAFMGGPEGMFYRQFSITMASSILFSGFVALTLTPALCALILTKEQENHVKLGFIGRVL 515 Query: 533 LIPDCIAIQFMRARFWGVG-----ISILFSICSICLLFTHGLNYGIDFKGGIQ 580 + R + S+ + + + +N G+ Q Sbjct: 516 QRFNAKFDSGSRKYERLIQHTVKKKSLTIILILVFCGLAYWINMGLPSGFIPQ 568 Score = 97.1 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 104/274 (37%), Gaps = 10/274 (3%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + +N+ ++ ++ + ++ + + Sbjct: 237 YPGRYTTEDEYKNIIIKSNKDGNIVRLKDIADVHLGSEVYDIYSTFNGRPSAAVTLKQAY 296 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYI 684 V+ VK + + + +SR L I K I + + I + I + Sbjct: 297 GSNARNVITKVKDAMAHLQKDMPKGMHYEISYDVSRFLDASIEKVIHTLFEAFILVAIVV 356 Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 +I W ++ I + + + + LF I N+ ++ A++ IG V+D +VV + Sbjct: 357 FIFLGDWRASIIPIMAVPISLLGSFIAMMLFNITLNMISLFALVMAIGIVVDDAIVVIEA 416 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIP 800 + N+++ +S + +K++ E G + S+ +P+A GG F+I Sbjct: 417 V--NVEISRNKLSPVEATEKAMKEISGAIIAISLVMASVFIPVAFMGGPEGMFYRQFSIT 474 Query: 801 MAFGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833 MA I+ + ++ + + L + + + ++ Sbjct: 475 MASSILFSGFVALTLTPALCALILTKEQENHVKL 508 Score = 45.1 bits (104), Expect = 0.053, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 74/224 (33%), Gaps = 12/224 (5%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + V S S ++ + +I+ N A + E+ ++ + + Sbjct: 796 QMVPYSDFMSLSKTYGMSEITRHNLYNSSEVTGAQAPGYSSGQALQAIQEVAQRSLPK-G 854 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 + IV ++ + + + + +++ + L I L + I Sbjct: 855 YDYDWAGISKDEAEQGN----TAIVIFVVCLVFVYLILAAQYENFLLPLPVIIFLPVGIF 910 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 F + G+E N+ A A++ LIG + V++ + ++ + Sbjct: 911 GAFLFLKVCGLENNIYAQIALVMLIGLLGKNAVLMVE---YAVQRKNAGERISQAAISAA 967 Query: 766 NETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIV 806 + TS+A ++P+ G I + G+V Sbjct: 968 IARFRPILMTSIAFIAGLIPLVFASGAGAIGNRTIGTAAVGGMV 1011 >gi|237752081|ref|ZP_04582561.1| preprotein translocase subunit SecF [Helicobacter winghamensis ATCC BAA-430] gi|229376648|gb|EEO26739.1| preprotein translocase subunit SecF [Helicobacter winghamensis ATCC BAA-430] Length = 323 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 84/294 (28%), Positives = 161/294 (54%), Gaps = 3/294 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 F++ +G+ +S++ + S+ L G G+DF GG + V ++P Sbjct: 1 MDFFKHNRIYDFVKMSSYGIVLSLILFVGSLILFVKPGFTLGVDFAGGTIIQVQYDKPAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L+ +R LE++ + + G ++ SV Q E+ I + + Sbjct: 61 LAEIRKTLEAVDAYNGVQVSEFGSPEEILIKLPTASSSVNQDIGQEV--ANILKNTGNLS 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ +IVGPK+ EL KG + ++++ ++++Y+ R++W FAL AI L+ DI G Sbjct: 119 VRRVDIVGPKVGNELKEKGALALVLALASIMLYVSYRYEWRFALAAILALVHDIVIATGA 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF I+ +L +AA+LTLIGYS+ND ++++DR+R+ + + S ++++++++ TL Sbjct: 179 VILFDIDLSLEVIAALLTLIGYSINDTIIIFDRIRETIGIRVN-DSLENVVNEALSATLS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R+V TS+ F +V + +GG +I F++PM G +V + SSIF+A+ +++ Sbjct: 238 RTVLTSLTVFFTVFTLYAFGGEIIKGFSLPMLVGSIVGSYSSIFVASKLVILFK 291 >gi|194365395|ref|YP_002028005.1| preprotein translocase subunit SecD [Stenotrophomonas maltophilia R551-3] gi|194348199|gb|ACF51322.1| protein-export membrane protein SecD [Stenotrophomonas maltophilia R551-3] Length = 618 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 159/519 (30%), Positives = 272/519 (52%), Gaps = 37/519 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + + LGLDL+GG H VL+VD+ ++ L Y++++RS L+ I Sbjct: 103 NLASTVPDWLANLGGRPMVLGLDLQGGVHFVLQVDQKAALDKRLDAYTEDVRSTLRDARI 162 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I + + S + ++ + L + I++ Sbjct: 163 PYQSVERRADNSIVANLSPSAGDDAAQRARAALVK---------AQPTLGYDVSGNRITV 213 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + I Q+ + AIEQ++ +R R++Q+G++E IQR G+ R+++QLPG QD + +++ Sbjct: 214 TVPETEITQIANGAIEQNINTLRNRVNQLGVAEPIIQRQGADRVVVQLPGVQDTAEAKRM 273 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + + V+ N++ G L+ +V ++G + GA A Sbjct: 274 IGATATLEYRAVVEGNAQDAITAGRIPPEAKVYQQRDGRGPILLNKRVIVTGDQMVGAQA 333 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319 D + P V ++ + +G +R F+ T N+ KP+AVV RV T V++ G Sbjct: 334 VTDSNSGSPAVSVTLNNVGGQRMFDFTSANVNKPMAVVYTERVPTVTVVDGQEVRGFKVN 393 Query: 320 SGNFTIE------------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 ++ A LA +L++GSL ++ VEER VG LG++++ Sbjct: 394 EEVISVANINGVFGKNFQTTGLQKKEAEDLAKLLKSGSLAAPMDFVEERVVGPSLGAENV 453 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 G A+V + ++F V Y +G++ ++ N+++ +A++SL GAT+TLP AG+ Sbjct: 454 KNGMRAVVFAFLFTLVFFSVYYRMFGVITSIAMLFNLLIVVAVMSLFGATMTLPGFAGLA 513 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +GL+VD+N+L+NERIREE R ++ G+ RA TI D+N+T LI V LF FG Sbjct: 514 LSVGLSVDANVLINERIREELRAGVPGKTAIVTGYERASGTILDANLTGLIVGVALFAFG 573 Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 G ++GFA+TM + I SMFTAI++ RA+ I +K Sbjct: 574 TGPLKGFALTMIIGIFASMFTAITVSRALATLIYGRRKK 612 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 91/254 (35%), Gaps = 4/254 (1%) Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635 + V+ V V E N + +Q + Sbjct: 363 NVNKPMAVVYTERVPTVTVVDGQEVRGFKVNEEVISVANINGVFGKNFQTTGLQKKEAED 422 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695 K + +VGP + E ++ G+ V+ + + L++ + ++ F + Sbjct: 423 LAKLLKSGSLAAPMDFVEERVVGPSLGAENVKNGMRAVVFAFLFTLVFFSVYYRM-FGVI 481 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 ++ ++ + +LFG L A + +G SV+ V++ +R+R+ ++ Sbjct: 482 TSIAMLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRAGVPGK 541 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815 + I G + ++ I + + +G + FA+ M GI + ++I + Sbjct: 542 T---AIVTGYERASGTILDANLTGLIVGVALFAFGTGPLKGFALTMIIGIFASMFTAITV 598 Query: 816 AAPILLFIYDWRAK 829 + + IY R K Sbjct: 599 SRALATLIYGRRKK 612 Score = 42.4 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 26/119 (21%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W ++ ++ + L ALPN + + + RGG ++ Sbjct: 2 LEFPRWKYVVILIVLALSALYALPNIYQKDPAIQITAN------------RGG-----QI 44 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119 D D + + LKK G+ + + + D + + +D + + Sbjct: 45 D---------DALRDRVLADLKKAGVDAVGAEKEGESLIVRLPDLKAQSAASDALRDTV 94 >gi|269792826|ref|YP_003317730.1| protein-export membrane protein SecF [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100461|gb|ACZ19448.1| protein-export membrane protein SecF [Thermanaerovibrio acidaminovorans DSM 6589] Length = 291 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 146/289 (50%), Gaps = 8/289 (2%) Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598 I FMR R + IS + + S+ L+ T GLN G+D+ GG+ + + R + +RS + Sbjct: 8 NIPFMRYRRVALAISAVAVVLSLLLVLTRGLNLGVDYTGGVLMHLELPREAQVGDIRSVV 67 Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 G+ Q + L + V + E + E VG Sbjct: 68 SPRVSGEPIIQAYGPRDFMLRL-------KSPSEAERKAVLSVLRERFGDVKVLKLETVG 120 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718 P + EL + +V + ++ + +L+Y+ RF++ F + A+ +L+ D LG ++L G E Sbjct: 121 PVVGAELKSEAMVALALALLGILLYMAFRFQFRFGVAAVLSLVHDAAIMLGVYSLTGREV 180 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778 +++ +AAVLT++GYS+ND +VV DR+R+N + ++D SIN+TL R++ TS+ Sbjct: 181 SVSFIAAVLTVVGYSLNDSIVVLDRIRENWRDVPKK-GISQVVDDSINQTLSRTINTSLT 239 Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + VL M GG VI +FA GI V SSI+IA IL + Sbjct: 240 TLLPVLAMFFLGGDVISNFAFAFLVGIGVGTYSSIYIAGAILAEWFLKS 288 >gi|218887253|ref|YP_002436574.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758207|gb|ACL09106.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1078 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 70/570 (12%), Positives = 160/570 (28%), Gaps = 32/570 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G + + + ++P +P I V Sbjct: 9 RPIFACVISIVIMLAGFMA-----MRALPIAQYPEIVPPQVI---------VSAVYPGAS 54 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + ++ + + Q I++SFA + V +Q Sbjct: 55 PEVIAATVASPLEQQINGVDGMLYMNSVSAGNGQMTISVSFAVGTDPDQATINVNNRVQA 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L + ++ + T + ++ ++ S ++ +D++ Sbjct: 115 ATASLPEEVRRQGVTVTKRSPSILQVANMFSPDGRYDSVYISNYVLVNVVDELKRLPGVG 174 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + P +L QL T ++ N G Y Sbjct: 175 DASIFGAKDYSMRIWLHPDKLAQLKLTPGDVALAIREQNAQFAAGRIGQEPSSSPLELNY 234 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 LV K ++ + I E + Sbjct: 235 LVTTKGRLTN-------------PEEFENIILRAEPDGSTLLLKHVARVELGAKDYDVRT 281 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + T + L + S + Sbjct: 282 QLNGKPTVAVGVFLTPGANALETADRVAAKMQELSQRFPDGISYSIPYDTTKFVRISITE 341 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+F+ + + L+ ++ ++++ T A + LG ++ ++ G+V Sbjct: 342 VVHTLVEAMVLVFLVVFLFLQNWRATLIPCLAVPVSIVGTFAGMYALGFSINTLTLFGLV 401 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IG+ VD I+V E + + + + + + V + F Sbjct: 402 LAIGIVVDDAIVVLENVERIMSSERLTPRKATIKAMEEVTGPVIAIVLVLCSVFVPVAFM 461 Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G G + FAIT+ +S++IS A+++ A+ +++ + + Sbjct: 462 GGLAGQMYKQFAITIAVSVVISGLVALTLTPALCALMLKPGHHEPPAFFRWFNNWFERVT 521 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567 A L + H Sbjct: 522 HRYTGGVAFLIRRAGLALVLFACLGGATWH 551 Score = 67.8 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 5/139 (3%) Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 W L + + I T G N + ++ IG V+D +VV + + Sbjct: 364 WRATLIPCLAVPVSIVGTFAGMYALGFSINTLTLFGLVLAIGIVVDDAIVVLENV--ERI 421 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806 + + ++ R K++ E G + + +P+A G G + FAI +A +V Sbjct: 422 MSSERLTPRKATIKAMEEVTGPVIAIVLVLCSVFVPVAFMGGLAGQMYKQFAITIAVSVV 481 Query: 807 VAASSSIFIAAPILLFIYD 825 ++ ++ + + + Sbjct: 482 ISGLVALTLTPALCALMLK 500 Score = 63.9 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 70/200 (35%), Gaps = 9/200 (4%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692 + + + + T +E G ++ +++++ + KW Sbjct: 835 QAIAAIEEVAAEVMPPEYTLAWSGSAYQEKQTGGSSSLVFVLGLVMVFLILAAQYEKWSL 894 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L I + + + L G+ ++ +++TLIG + + +++ + + Sbjct: 895 PLAVIMAVPFALFGAITAVWLRGLANDVYLQISLVTLIGLAAKNAILIVEFA---VIKRH 951 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809 +S + ++ + TS+A + +P+A+ G + S + G++ A Sbjct: 952 EGLSLVESAIEAARLRFRPIIMTSLAFVLGCVPLAISSGAGAASRHSIGTGVIGGMLAAT 1011 Query: 810 SSSIFIAAPILLFIYDWRAK 829 + F I + Sbjct: 1012 FIATFFIPMFYRLIMGVSER 1031 >gi|90578146|ref|ZP_01233957.1| Putative membrane protein SecD [Vibrio angustum S14] gi|90441232|gb|EAS66412.1| Putative membrane protein SecD [Vibrio angustum S14] Length = 585 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 161/515 (31%), Positives = 265/515 (51%), Gaps = 34/515 (6%) Query: 27 LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83 L ++ P + I LGLDLRGG +L+VD Q D+LR +K Sbjct: 87 LTLALEPAAPMWLQDMGFEPIKLGLDLRGGVQFLLDVDVKQVYKNHAQQLMDDLRVNFRK 146 Query: 84 EGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142 + I + +++ + + + + + + Sbjct: 147 QEIRGGRAELKGMDQVIVRLPSEAANDKVRQFIREQYPQWQA-----------TNGSADN 195 Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202 + + LS+ + + ++Q+++ +R RI+++GI+E+++QR G +RI I+LPG QDP+ Sbjct: 196 LLLTLSEKEKTDLRNLTVQQNLQTMRSRIEELGITEASVQRQGENRIRIELPGVQDPAAA 255 Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 + ++G TA ++F+ V L D +GN V K ++G H+ A A+F Sbjct: 256 KNVIGATASLAFYAVKE-----EGTGSTMILPDKNGNPVRVSRKPVLTGDHIVDARASFG 310 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQ 310 P V+I+ D G + + +R N+GKP+A A Q Sbjct: 311 ENGT-PEVNITLDSAGGKIMSDFSRMNVGKPMATSYSEYSRNAQGETVQTNKIISVATIQ 369 Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370 + +I+G ++E A LA +LRAGSL + IVEER +G LG+++I G A+ Sbjct: 370 TQLGSRFRITGAGSLEDAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALAL 429 Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVD 429 GL + +LFM V Y + G VA+ ++ N+I+ LL+L+ A LTLP IAG+VL +G+AVD Sbjct: 430 GLGVTLLFMAVWYRRLGWVANIALLTNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVD 489 Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489 +N+L+ ERIR+ R +S+ ++D GFS A+ TIFD+N T +I VVL+ G G ++GFA Sbjct: 490 TNVLIFERIRDMIRDGRSLAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFA 549 Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +T+GL +L SMFT I RA++ + + + Sbjct: 550 LTLGLGLLTSMFTGIFASRAIINLVWGRDSRRDVR 584 Score = 127 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 95/260 (36%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G ++ V S N + + + + L G + Sbjct: 326 GKIMSDFSRMNVGKPMATSYSEYSRNAQGETVQTNKIISVATIQTQLGSRFRITGAGSLE 385 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I+ G + + L+++ + ++ Sbjct: 386 DAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALALGLGVTLLFMAVWYR-R 444 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A L+ ++ G AL G L +A ++ +G +V+ V++++R+R ++ Sbjct: 445 LGWVANIALLTNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDMIRD 504 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 S ID+ + G + I+ + + G I FA+ + G++ + Sbjct: 505 ---GRSLAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 561 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + I+ ++ ++ Sbjct: 562 TGIFASRAIINLVWGRDSRR 581 >gi|189426481|ref|YP_001953658.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Geobacter lovleyi SZ] gi|189422740|gb|ACD97138.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Geobacter lovleyi SZ] Length = 1055 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 73/689 (10%), Positives = 174/689 (25%), Gaps = 47/689 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GLL + ++P P + V Sbjct: 8 RPIFAWVIAILVMLAGLLAI-----KTLPVSQYPPIAPPQIT---------INAVYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + I L+F +V LQ Sbjct: 54 AQTVQDTVTQVIEQKLNGIDNLIYMSSTSDSAGAVSINLTFKAGTDPNIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L +K + + +++ + + + ++ D + E Sbjct: 114 ATPLLPQVVQKQGIQVVKSTKNFLLIVGLISEDGSMDRHQLTDYMVSNLQDIVSRVEGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + +PS+L T++ + N FG + Sbjct: 174 ELQQFGTQ-NAMRIWLNPSKLNSYQLTSSDVVTALQAQNAQVSAGQFGGTPSNEGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I Sbjct: 233 TITARTLL-------------QTAEQFDAVILRTNPDGSTVRLKDVAVSKIGTENYDIVA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + A + T L + S Sbjct: 280 RYKGKPLAGMAIRLAAGANALDTANRVKAKMTELSKFFPAGMQVVYPYDTTPFVKISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV I++F+ + + L+ ++ + ++ T+ +LS G ++ ++ +V Sbjct: 340 VVHTLVEAVLLVFIIMFLFLQNIRATLIPTIAVPVVLLGTMGVLSAAGFSINTLTMFALV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 + IGL VD I+V E + + S + + S + + + FF Sbjct: 400 IVIGLLVDDAIVVVENVERIMSEEGLSPHDATIKSMGQITSALVGIATVLSAVFLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------------KKMKSI 523 GG R F+IT+ ++++S+ A+ + A+ +++ K + Sbjct: 460 GGSTGVIYRQFSITIIAAMILSVLVALILTPALCSTLLKPVEKGHEPGECGPFCKFFRWF 519 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + F + + V + + + + +G I V Sbjct: 520 NRKFDWARGKYEGIVGRSFNKPIRYLVVYGCIVAAMMLFFHRLPTAFLPDEDQGFIICQV 579 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E L+ + + E V G +K Sbjct: 580 QLPAGATQERTLKVVEQLEQHFLEKEKKTVEAIITVAGFSFAGSGQNMGLAFVKLKDWKL 639 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 ++ Sbjct: 640 RPTKDMKAPAVAGRAMGAFSKIKDGLAFA 668 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + DI + + +++ ++ ++++ Sbjct: 258 STVRLKDVAVSKIGTENYDIVARYKGKPLAGMAIRLAAGANALDTANRVKAKMTELSKFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + + + I +++ + L + + + Sbjct: 318 PAGMQVVYPYDTTPFVKISIEEVVHTLVEAVLLVFIIMFLFLQNIRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T+G + G N + A++ +IG V+D +VV + + + +S D KS+ Sbjct: 378 GTMGVLSAAGFSINTLTMFALVIVIGLLVDDAIVVVENV--ERIMSEEGLSPHDATIKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + V + LPMA +GGS F+I + ++++ ++ + + Sbjct: 436 GQITSALVGIATVLSAVFLPMAFFGGSTGVIYRQFSITIIAAMILSVLVALILTPAL 492 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 30/255 (11%), Positives = 78/255 (30%), Gaps = 11/255 (4%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + Q G + ++G + + Q G S + Sbjct: 793 VRNDKGDMVPFSAFATARWQYGSPRLERYNGIPSVEIMGQAAAGISTGEAMAEMEKMAAK 852 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ +A+ + W + L L Sbjct: 853 LPSGIGYEWTGLSYEEKNAGAQAPALYAISLLVVFLAVA---ALYESWTIPFVNLLMLPL 909 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + L + ++ +LT +G S + +++ +++ + D Sbjct: 910 GLVGAVTAVTLRLLPNDVYLQIGLLTTVGLSTKNAILIIQFIKEQLHQ---GHELVDATL 966 Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A F LP+A+ G + + + G++ A + Sbjct: 967 SAVKIRLRPVIMTSLAFFFGTLPLALTKGAGAAAQNAIGTAVTGGLLSATFIDLIFIPFF 1026 Query: 820 LLFIYDW--RAKNAR 832 + + R K + Sbjct: 1027 FVMVSRLFGRKKYKK 1041 >gi|4321266|gb|AAD15664.1| resistance nodulation cell division family member TbtB [Pseudomonas stutzeri] Length = 1046 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 77/687 (11%), Positives = 184/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L + G L + + + ++P+ + Sbjct: 8 RPIFAWVLAIVAMLAGALSLV-----KMPISQYPNIAAPAV---------SIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ S L + I ++F + +V LQ Sbjct: 54 AQTVQDTVVQVIEQQLSGLDGFRYMSAESASDGSMTIIVTFEQGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 +L + ++ L ++ ++ + I Q D I + Sbjct: 114 ATPRLPEEVQRQGLRVVKYQQNFFLIIGLADSTGKMSNFDLGNVIASQLQDPISRIDGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP++L T ++ N G R Sbjct: 174 DYMLFGSP-NAMRIWLDPAKLNSYQLTPGDVADAIREQNVQVSSGQLGGLPTRTGVQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V K ++ + + + + + Sbjct: 233 TVLGKTRMT-------------TPAEFEEILVKVKTDGSQIRVKDVAQVALGADNFSISS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T+E +A S S Sbjct: 280 THNGKPSAGLALRLASGGNLLETVEAVKAEMEKQKAYLPEGIEVFYPYDTTPVVEASISS 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ ALL G ++ + ++ +V Sbjct: 340 VVQTIVEAVALVFLVMYLFLQNFRATLIPTLAVPVVLLGAFALLPYFGLSINVLTMYAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERLMHEEGLTPLEATRKSMGQIQGALVGIGLVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535 GG + FA+T+ L + +S+ A+ A+ I F I Sbjct: 460 GGSAGIIYKQFAVTIVLCMSLSVLVALIFTPALCATILKKPKGDAHHEKKGFFGWFNRIF 519 Query: 536 DCIAIQFMR--------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D +F R + + ++ + + +G + + V Sbjct: 520 DRGTNRFERGVGGMLKHRGRYLLAFMLITAGTGYLFTQIPKAFLPNEDQGLMMVEVRMPV 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ L+ + S ++ + + G L M+K Sbjct: 580 NSSAERTQAVLQEVSDYLGSEEDHLIDHVLSINGFNFAGRGQNSGLTLLMLKDWSVRQGD 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 + + ++ ++ + Sbjct: 640 GEDVFSLAERANARFAQIKDATVMAFV 666 Score = 74.3 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 84/246 (34%), Gaps = 6/246 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + + V IS + L G+ + ++ +K + Sbjct: 258 SQIRVKDVAQVALGADNFSISSTHNGKPSAGLALRLASGGNLLETVEAVKAEMEKQKAYL 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + ++ + + + +++ + + L + + + Sbjct: 318 PEGIEVFYPYDTTPVVEASISSVVQTIVEAVALVFLVMYLFLQNFRATLIPTLAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 FG+ N+ + A++ IG V+D +VV + + ++ ++ + KS+ Sbjct: 378 GAFALLPYFGLSINVLTMYAMVLAIGLLVDDAIVVVENV--ERLMHEEGLTPLEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V + +PMA +GG +I FA+ + + ++ ++ + Sbjct: 436 GQIQGALVGIGLVLSAVFVPMAFFGGSAGIIYKQFAVTIVLCMSLSVLVALIFTPALCAT 495 Query: 823 IYDWRA 828 I Sbjct: 496 ILKKPK 501 Score = 54.3 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 42/418 (10%), Positives = 120/418 (28%), Gaps = 23/418 (5%) Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490 +L+ + + VF + +R ++ I D+ + A + +L F Sbjct: 626 TLLMLKDWSVRQGDGEDVFSLAERANAR-FAQIKDATVMAFVPPAILEMGNAMGFNLFLQ 684 Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550 ++ A + + + ++++ N I + RA + Sbjct: 685 DNSGVGHAALMDARN---QFLQLANGHPHLRAVRPNGKDDEPQFQVNIDDEKARALQVSI 741 Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610 + ++ + K + + + +G++ + Sbjct: 742 ASINETMSAAWGSMYVNDFIDQGRVKRVY-IQGQDDSRISPEDFGKWYVRNALGEMVPFS 800 Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670 ++ + + + L G+ Sbjct: 801 AFATGEWVFGSPKLERYGGISSVEILGEPAPGYSTGDAMVAIAEIMKELPPGIGLSYTGL 860 Query: 671 ----------VGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIE 717 ++ + +++++ + W + + + L I + + + Sbjct: 861 SYEEIQTGDQAPMLYALTVLIVFLCLAALYESWSVPVSVMMVVPLGILGAVLATLMRELN 920 Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777 ++ ++T +G S + +++ + + + + D + L V TS+ Sbjct: 921 ADVYFQIGLMTTVGLSAKNAILIVEFAKDLYEKE--GMPLVDAAVHAARLRLRPIVMTSL 978 Query: 778 AAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 A VLPMA+ G S A + G+V A ++F + + + Sbjct: 979 AFTFGVLPMALASGAGAGSQHSIATGVVGGMVTATVLAVFFVPLFYVVVVKLFEGRKK 1036 >gi|83944216|ref|ZP_00956672.1| Cation/multidrug efflux pump, RND family protein [Sulfitobacter sp. EE-36] gi|83845083|gb|EAP82964.1| Cation/multidrug efflux pump, RND family protein [Sulfitobacter sp. EE-36] Length = 1037 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 78/684 (11%), Positives = 187/684 (27%), Gaps = 40/684 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I IG+L L + ++P P + Sbjct: 8 RPIFAWVISIFIMGIGVLSIL-----NLPVAQYPQIAPPSV---------AVRASYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L S ITL+F + +V L Sbjct: 54 AQTVANTVTQVIEQQMTGLDGLRYISSSSTSEGGASITLTFETGTDVDIAQVQVQNKLSQ 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 ++ L ++ + +++ + A + + +++I E Sbjct: 114 ASALLPEPVQRQGITVQKSSAGFLMVIGLIGENGKYDATDLGDYMQSNLVNEISRVEGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L T + + N FG R + Sbjct: 174 SVQVFGAQ-YAMRIWLDPVKLAAFELTPSDIVAAVSAENAQISAGSFGSRPAVEGQALNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + E + Sbjct: 233 TITAQSLLT-------------SPEDFRQIVLRAETDGGLVLLNDVARVEIGSESYATIS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 S + T L A +V S Sbjct: 280 RYNRNAATGMAVSLAPGANALDTAAAVEQRIEELSAFFPEGVSYVVPFDTTPFVKISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV IV+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VIKTLIEAIVLVFIVMYLFLQNIRATLIPTLAVPVVLLGTFGVLAAFGFSINTLTMLGMV 399 Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479 L IGL VD I+V E + + + + + I + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEHIGPLEATRKSMDQITGALIGIAVVLSAVFVPMAFF 459 Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDINPLSR 530 G + F+IT+ ++ +S+ A+++ A+ +++ + + Sbjct: 460 PGSTGVIYKQFSITIISAMTLSVVVALTLTPALCASLLKQGSHEKRRGFFGLFNRGFDKT 519 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + R G+ + + + T + +G + V A Sbjct: 520 LGGYTGTVGWLVRRPLRVGLVYLAIIAAMVFLFMRTPAGFLPAEDQGTLFTLVQAPTGAT 579 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ ++ + + E F V G V +K + Sbjct: 580 AERTLEVIKQVENYYLENEGDVVESVFGVVGFSFAGQGQNLGLVFVRLKDWEQRTEAAQS 639 Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674 +Q ++ + ++ Sbjct: 640 VQAVAGRAFGAFSQIQDAMVFPIV 663 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 87/248 (35%), Gaps = 6/248 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L+ V + + + +++ +E ++++ P Sbjct: 260 VLLNDVARVEIGSESYATISRYNRNAATGMAVSLAPGANALDTAAAVEQRIEELSAFFPE 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + I +I + + + I +++ + L + + + T Sbjct: 320 GVSYVVPFDTTPFVKISIEEVIKTLIEAIVLVFIVMYLFLQNIRATLIPTLAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G A FG N + ++ IG V+D +VV + + + I + KS+++ Sbjct: 380 FGVLAAFGFSINTLTMLGMVLAIGLLVDDAIVVVENV--ERIMEQEHIGPLEATRKSMDQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + ++ +PMA + GS F+I + + ++ ++ + + + Sbjct: 438 ITGALIGIAVVLSAVFVPMAFFPGSTGVIYKQFSITIISAMTLSVVVALTLTPALCASLL 497 Query: 825 DWRAKNAR 832 + R Sbjct: 498 KQGSHEKR 505 Score = 50.8 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 9/135 (6%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + + + I TL L G E + +LT++G + + +++ + R Sbjct: 889 SWSIPFAVMLAMPIGILGTLTGAYLGGFENGVFFQVGLLTVVGLTGKNAILIVEFARD-- 946 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 S D + + + TSMA + VLP+ + G+ + G++ Sbjct: 947 -RRQEGESIFDAAVDAARQRFRPIIMTSMAFSLGVLPLVLSTGAG-SGGRTAIGAGVLAG 1004 Query: 809 ASSSIFIAAPILLFI 823 IAA +L + Sbjct: 1005 T-----IAATVLGVL 1014 >gi|120556401|ref|YP_960752.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Marinobacter aquaeolei VT8] gi|120326250|gb|ABM20565.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Marinobacter aquaeolei VT8] Length = 1036 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 74/688 (10%), Positives = 172/688 (25%), Gaps = 48/688 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ M+ G L +++FP P + L V+ Sbjct: 8 RPIFAWVVALMLMLGGGLAV-----KNLAVNQFPDVAPPA-------------IALSVNY 49 Query: 63 DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 +Q ++ + L + I +F + +V Sbjct: 50 PGASAQTVQDTVVQVIEQQLNGLDGLRYISSESNSDGSMTIIATFEQGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ N L + ++ + + K + + + I+ D + + Sbjct: 110 KLQLANPLLPEEVQRQGIRVSKYKVNFFTVFALTSPDGKYTQGDLADYIVSNIQDPVART 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + L + DP +L T + N G + Sbjct: 170 QGVGDFLLFGSQ-YAMRLWLDPEKLNSYQLTPQDVINSVRAQNVQVSAGQLGGLPTAEGV 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q V K + + + + Sbjct: 229 QLQATVIGKQR-------------MKTAEEFENILLKVNPDGSQVRLADVAEVNLGNENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L + Sbjct: 276 ATTGKYNGAPAAGMALRLATGANQLETAGRVKETLAELERFLPEGVEIVFPYDTTPVVSA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + ++ ++ + ++ T +L G T+ + ++ Sbjct: 336 SIETVAMTLIEAVVLVFLVMFLFLQSWRATIIPTLAVPVVLLATFGVLYAFGFTVNVMTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERLMEEEGLSPKEAAKKSMDQISGALLGIGLVISAVFLP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526 + FFGG R F++T+ ++ S+ A A+ + +R + Sbjct: 456 MAFFGGSTGVIYRQFSVTIISAMSFSVLVAFIFTPALCATLLKPGDQHVRKGFFGWFNRT 515 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 ++ R + +L + +G + + V Sbjct: 516 FDRSADRYKSGVSYLIKRKGRFMGVYLLLVVAVGFLFKGLPTAFLPDEDQGVMIVMVQLP 575 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L + ++ + VR G + +K Sbjct: 576 TNATGERTEAVLAEAGNYLLEEESEVVKSVMSVRGFNFAGRGQNSGILFVDLKPFADRES 635 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674 ++ ++ + ++ Sbjct: 636 FAQSVFALAGRSGARFAQIKDAIVFPIV 663 Score = 85.1 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L+ V + + + + + + ++ ++ + Sbjct: 258 SQVRLADVAEVNLGNENYATTGKYNGAPAAGMALRLATGANQLETAGRVKETLAELERFL 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705 P + I + +I + + + + +++ W + + + + Sbjct: 318 PEGVEIVFPYDTTPVVSASIETVAMTLIEAVVLVFLVMFLFLQSWRATIIPTLAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G FG N+ + A++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 ATFGVLYAFGFTVNVMTMFAMVLAIGLLVDDAIVVVENV--ERLMEEEGLSPKEAAKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 ++ G + + LPMA +GGS F++ + + + + + Sbjct: 436 DQISGALLGIGLVISAVFLPMAFFGGSTGVIYRQFSVTIISAMSFSVLVAFIFTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 58.2 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 74/252 (29%), Gaps = 8/252 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + G Q + G ++ G S Sbjct: 786 VRNAQGEMVPFAAFATGEWVFGSPRLQRYQGLPATQIQGAPANGYSTGDAMAALERIAAD 845 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + ++ +++ + + + W I + L Sbjct: 846 LPQGLGLEYTGLSFEEKQAGNQAMMLYLLSILVVFLCLA---ALYESWSIPFAVIMLVPL 902 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + G+ ++ +LT +G + + +++ + R+ + Sbjct: 903 GVLGAVLATMARGLSNDVFFQVGMLTTMGLAAKNAILIVEFARQLYEQEGK--PLLQATA 960 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A VLPMA+ G+ + + G + A +IF Sbjct: 961 EAARLRLRPIIMTSLAFIFGVLPMAIASGASSASQHAIGTAVVGGTLAATILAIFFVPLF 1020 Query: 820 LLFIYDWRAKNA 831 +F+ K Sbjct: 1021 YVFVVGLTGKRK 1032 >gi|119776686|ref|YP_929426.1| AcrB/AcrD/AcrF family protein [Shewanella amazonensis SB2B] gi|119769186|gb|ABM01757.1| AcrB/AcrD/AcrF family protein [Shewanella amazonensis SB2B] Length = 1046 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 71/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + ++P+ P +V+ + Sbjct: 8 RPIFAWVIAILVMLAGVLAI-----KSLPVSQYPNIAPPT-------------VVISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117 L+ + + + + +ITL+F + +V Sbjct: 50 PGASAKTLEDSVTQVIEQRMTGLDNLRYINSTSDGFGNAEITLTFNAEADADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + + + +++ + + + + D + Sbjct: 110 KLQSAMPLLPQEVQAQGVRVNKSTSGFLMVLGFVSEDGSLTKNDIADYVGSNVQDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L Q TT + N G Sbjct: 170 AGVGEITLFGAP-YAMRIWLDPLKLTQYSLTTQDVIAAIREQNAQVSAGQLGGAPAVLGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + I + + F + Sbjct: 229 ELNATVSAQSRL-------------ETPEQFRKIILKSDTNGAKVFLGDVARVELGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + S + T A ++ + Sbjct: 276 VVESFYNGRPAAGLAISLATGANALDTATRVREKIAEMKPFFPAGLDVVYPYDTTPFVKQ 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +++++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIEGVVHTLLEAVVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + +T V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLGPVEATRKSMDQITGALVGIGLTLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + F G R F+IT+ ++ +S+ A+ + A+ + ++ Sbjct: 456 MAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCATMLKPLKPGHSHGQHGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + +A R+ L + + +G + V Sbjct: 516 NRSFEKMTSRYEGSVAAILKRSARVMAIYLALVVATGWIFMRMPTAFLPDEDQGILFAQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + LE + + + F V G +K Sbjct: 576 ILPTNSSQESTVKVLEKMDKFFREDEKDNVNSVFSVAGFSFAGMGQNMGIAFVGMKDWAV 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + + ++ + Sbjct: 636 REGEGQDVFSLQGRAMMAFSQIKEAFVFA 664 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 7/232 (3%) Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 V R L + SF N + L TRV E + + + Sbjct: 264 DVARVELGAESYVVESFYNGRPAAGLAISLATGANALDTATRVREKIAEMKPFFPAGLDV 323 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 P + + + + ++ + + + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKQSI-EGVVHTLLEAVVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAI 382 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 + FG N + A++ IG V+D +VV + + + + + KS+++ G Sbjct: 383 LSAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLGPVEATRKSMDQITG 440 Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V + +PMA GS F+I + + ++ ++ + + Sbjct: 441 ALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 30/267 (11%), Positives = 78/267 (29%), Gaps = 11/267 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + V S + + N N Sbjct: 777 YRMQPEDLNTWYVRNANGEMVPFSAFATGRWDFGSPRLERFNGLPAMNIQGATAPGYSTG 836 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + ++V++ + E + + I + L+ + Sbjct: 837 DAMKDIEKIVEQLPPGFGVEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALYE 891 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + + L I L G+ ++ +LT +G + + +++ + ++ Sbjct: 892 SWSVPFAVVLVVPLGIIGALLAMNGRGLSNDVFFQVGLLTTVGLATKNAILIVEFAKEY- 950 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 Y + ++ L + TS+A + V+P+A+ G + + G+ Sbjct: 951 --YEKGAGLIEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGAQNAIGTGVLGGM 1008 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 + + IF + + +K + Sbjct: 1009 MSSTFLGIFFVPLFFVIVERIFSKREK 1035 >gi|209520688|ref|ZP_03269439.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia sp. H160] gi|209498888|gb|EDZ98992.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia sp. H160] Length = 1076 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 68/575 (11%), Positives = 153/575 (26%), Gaps = 46/575 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL + ++P+ P + + Sbjct: 8 RPIFAWVIAIILMLAGLASVF-----TLPIAQYPTIAPP-------------SIQISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ITL+FA + +V Sbjct: 50 PGASADTVQNTVTQVIEQQMSGLDHLLYLASTSDDSGTATITLTFAAGTNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L ++ T +++ + + + + D I Sbjct: 110 KLQLATPLLPQAVQQLGTRVTKSSSSFLLVMAFVSTDGSMNKYDLANYVASNIQDPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + D ++L T + N G G Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDANKLNNFGLTPLDVQTALQAQNVQVAGGGLGGTPSVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + + + + + + Sbjct: 229 VLQATITQATLL-------------NTPEQFGNILLKVNQDGSQVRLRDVARVELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + A L + Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALSTAKAVRTKIAELSKYFPHGLVVQYPYDTTPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A++S++G ++ + S+ Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMSVVGFSINVLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMQEEGLSPREATRKAMDQITGALVGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F++T+ ++++S+ A+ + A+ I +K I + Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIPKGHHEKATG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568 F +R S L + Sbjct: 511 FFGWFNRTFNNSRDKYHSGVHHVIKRSGRWLIIYM 545 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 51/426 (11%), Positives = 138/426 (32%), Gaps = 19/426 (4%) Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464 L L +T A I L + +I + + + ++ +R + Sbjct: 75 LLYLASTSDDSGTATITLTFAAGTNPDIAQVQVQNKLQLATPLLPQAVQQLGTR----VT 130 Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSIL-------ISMFTAISIVRAMMIFIIRY 517 S+ + L+ + G A + +I + + M + Sbjct: 131 KSSSSFLLVMAFVSTDGSMNKYDLANYVASNIQDPISRIDGVGTVTLFGSQYAMRIWLDA 190 Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577 K+ + + PL + G S+ + + LN F Sbjct: 191 NKLNNFGLTPLDVQTALQAQNVQVAGG--GLGGTPSVPGQVLQATITQATLLNTPEQFGN 248 Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637 + V L V + + + ++++ + + Sbjct: 249 ILLKVNQDGSQVRLRDVARVELGGENYNFDTKYNGQPTAGFGIQLATGANALSTAKAVRT 308 Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696 ++++ P + R I + + ++ + + + +++ + L Sbjct: 309 KIAELSKYFPHGLVVQYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIP 368 Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756 + + + T ++ G N+ ++ ++ IG V+D +VV + + + +S Sbjct: 369 TIAVPVVLLGTFAIMSVVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMQEEGLS 426 Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813 R+ K++++ G V ++ +P+A GGSV F++ + +V++ ++ Sbjct: 427 PREATRKAMDQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVAL 486 Query: 814 FIAAPI 819 + + Sbjct: 487 ILTPAL 492 Score = 70.1 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 83/262 (31%), Gaps = 10/262 (3%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + A V S + + + N Sbjct: 777 PFRMKPEDVNSWFVRNSAGTMVPFSAFANTQWAFGSPKLERYNGISSVEIQGAAAAGKST 836 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + +V K + T + + ++ + +++ + + + Sbjct: 837 GQAMGAMEAIVAKLPAGVGYEWTGLSLQERQSGSQAPILYG--ISILVVFLCLA---ALY 891 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W I + L + L L G+E ++ +LT +G S + +++ + R Sbjct: 892 ESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARD- 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + + ++ L + TS+A + VLP+A+ G + + + G Sbjct: 951 -LQQSEGMGPIEAALEAARLRLRPILMTSLAFILGVLPLAISNGAGSASQHAIGTGVIGG 1009 Query: 805 IVVAASSSIFIAAPILLFIYDW 826 ++ A +IF+ + I Sbjct: 1010 MLTATFLAIFMIPMFFVVIRAK 1031 Score = 57.8 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 67/520 (12%), Positives = 137/520 (26%), Gaps = 28/520 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I +I +GLL + P L G + Sbjct: 536 RSGRWLIIYMVVIFAVGLLFV------RLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + L + S G Q + + D +++ KV ++ Sbjct: 590 LKDVSDYLLIDEKAIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHADQKVQALVRR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + + + I + + D + + + + + + Sbjct: 650 LFMHFSTYKNA-TVYPVNPPSIPELGTAAGFDFQLQDRGGIGHAKLMEARNMLLGLAAKD 708 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 L R Q + + +S + S V D+DG Sbjct: 709 PILAQVRPNGLNDTPQFKVSIDHEKASALGVSLATIDQTFSIAWASAYVNNFLDTDGRI- 767 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 KV + G + V N R Sbjct: 768 ---KKVYLQGDAPFRMKP-------EDVNSWFVRNSAGTMVPFSAFANTQWAFGSPKLER 817 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + +G I+A + ++ER G S Sbjct: 818 YNGISSVEIQGAAAAGKSTGQAMGAMEAIVAKLPAGVGYEWTGLSLQERQSG------SQ 871 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 I +V + L + + L VI L +L G + G++ Sbjct: 872 APILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 +GL+ + IL+ E R+ + + + I +++ ++ + L Sbjct: 932 TTVGLSAKNAILIVEFARDLQQSEGMGPIEAALEAARLRLRPILMTSLAFILGVLPLAIS 991 Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 G + + +L + F AI ++ + I Sbjct: 992 NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031 >gi|300697414|ref|YP_003748075.1| component of acridine efflux pump, multidrug efflux system [Ralstonia solanacearum CFBP2957] gi|299074138|emb|CBJ53683.1| component of acridine efflux pump, multidrug efflux system [Ralstonia solanacearum CFBP2957] Length = 1051 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 82/684 (11%), Positives = 181/684 (26%), Gaps = 39/684 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L + ++PS P Sbjct: 8 RPIFAWVLAIIVMLAGALSIA-----TLPIAQYPSIAPPAI---------AITATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ L + + ITL+F + + +V L Sbjct: 54 AKTLEDTVTQIIEQKMKGLDHLSYMASTSESSGSVTITLTFENGTDPDTAQVQVQNKLAL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + + + + + S + D I E Sbjct: 114 ATPLLPQEVQQQGVQVTKSATNFLNVLAFTSEDGSMNGSDLSDYVAANVQDAISRVEGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G + Sbjct: 174 DTTLFGSQ-YAMRIWLDPNKLSNFSLTPLDVKTAIQAQNAQVSAGQLGAMPALGNQQINA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + + + I Sbjct: 233 TITSQTRL-------------KTVEEFGNILLRTQTDGAQVRLRDVARIELGSENYNTVG 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T++ A L P S Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFPPGMKVQKPYDTTPFVRISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G T+ ++ +V Sbjct: 340 VVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAACGFTINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQITGALVGVALVLAAVFVPMAFF 459 Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G R F+IT+ ++ +S+ A+ + A+ + +K + Sbjct: 460 KGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCATL-----LKPVKKGHAQATTGFFGW 514 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 F R GI S + +G+ + + G ++L V D + Sbjct: 515 FNRTFDRGNHRYQGIVRHMLGKSRRYMAVYGMLFALVVVGFMKLPVGFLPDEDQGTLF-V 573 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L L G + + D + ++V+ + + Sbjct: 574 LAQLPPGATNARTEDVIRQVEHHFLVDQKEAVSGVFSVAGFSFAGSGQNMGFAFVKLRPW 633 Query: 658 GPKISRELIRKGIVGVIISAIAML 681 + L G+V A L Sbjct: 634 NERKGEALSVNGVVAKAFGFFATL 657 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 85/246 (34%), Gaps = 6/246 (2%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V L V + + + L +++ + ++ ++ P Sbjct: 259 QVRLRDVARIELGSENYNTVGRYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFP 318 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706 R I + + ++ + + + +++ + + L + + + Sbjct: 319 PGMKVQKPYDTTPFVRISIEEVVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLG 378 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T G A G N + A++ IG V+D +VV + + + + ++ KS+ Sbjct: 379 TFGVLAACGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSMG 436 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + G V ++ +PMA + GS F+I + + ++ ++ + + + Sbjct: 437 QITGALVGVALVLAAVFVPMAFFKGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCATL 496 Query: 824 YDWRAK 829 K Sbjct: 497 LKPVKK 502 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 60/170 (35%), Gaps = 11/170 (6%) Query: 668 KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFN-LTAV 723 G ++ + + +++ + W I + L + L A+ + N + Sbjct: 869 TGQTTLLYTLSILFVFLCLAALYESWAIPFSVIMVVPLGVLGAL-IGAILTWKMNDVYFQ 927 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 +LT IG + + +++ + + L+ + + + L + TS+A + V Sbjct: 928 VGLLTTIGLASKNAILIVEFAKD---LHAQGMRLAEAAMTAARMRLRPILMTSLAFILGV 984 Query: 784 LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 LPM G + + G++ +IF + + + Sbjct: 985 LPMVTGSGAGAGAQHALGTAVIGGMLSGTVLAIFFVPLFFVLVRGLFRRK 1034 >gi|317504461|ref|ZP_07962439.1| multidrug efflux RND transporter MexF [Prevotella salivae DSM 15606] gi|315664404|gb|EFV04093.1| multidrug efflux RND transporter MexF [Prevotella salivae DSM 15606] Length = 1062 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 68/535 (12%), Positives = 157/535 (29%), Gaps = 40/535 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +++ +I IG+L + +FPS P ++V D Sbjct: 7 RRPVLAIVVSLVIVFIGILSLF-----NLPITQFPSISPPK-----------VNVV--AD 48 Query: 62 EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 N + + L L G+ + +I + F A V Sbjct: 49 YPGANNELMIKSVLIPLEQALNGVPGMKYIESDAGNDGEGEINIVFKLGTDPNVDAINVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + +KL + + + E+ ++ D ++ Sbjct: 109 NRVSAATNKLPPAVVREGVKISREEPNILMYINLYSDDPKVDQNFLFNYADINISPELAR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + P +L + + ++ + G + + Sbjct: 169 VDGVGDLDILGTRSFAMRVWLKPDKLTAYGLSASDITDALQQQSIEASPGKLGESSGKHA 228 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 +Y+++ + + + + ++ V Sbjct: 229 QSFEYVLKYPGRYT-------------TPEEYSNIVVKSTPDGQFIRLKDVADVSLGSEV 275 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 L + I+ A L+ + Sbjct: 276 YDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDMPKGMHYELSYDISRFLD 335 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV V+F+ + + L+ ++ +++I + A+++ G TL + S Sbjct: 336 ASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLIGSFAVMNAFGITLNMIS 395 Query: 417 IAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 + +V+ IG+ VD I+V E + + ++ + I + + Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVKIAQEGLEPLEATQKAMKEISGAIVAVTLVMASVFI 455 Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 + F G G R F+IT+ I++S FTA+++ ++ I+ ++ I Sbjct: 456 PVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCALILTRERDNHIKKTW 510 Score = 94.8 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 92/248 (37%), Gaps = 6/248 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + + L V ++ DI + Q ++ + ++ + + + Sbjct: 259 QFIRLKDVADVSLGSEVYDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDM 318 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDIT 705 P + I K I + + I + + W AL + + + Sbjct: 319 PKGMHYELSYDISRFLDASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLI 378 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 + FGI N+ ++ A++ IG V+D +VV + + N+K+ + + K++ Sbjct: 379 GSFAVMNAFGITLNMISLFALVMAIGIVVDDAIVVIEAV--NVKIAQEGLEPLEATQKAM 436 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 E G V ++ +P+A GG F+I +A GIV++ +++ + + Sbjct: 437 KEISGAIVAVTLVMASVFIPVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCAL 496 Query: 823 IYDWRAKN 830 I N Sbjct: 497 ILTRERDN 504 Score = 51.6 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 10/245 (4%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V + + + + + S A K I E+ Sbjct: 789 NVKNNQGEMVPYADFLHMEKVYGMSEMTRHNLYNSAEVTGSAAAGYSSGQAIKAIEEVAA 848 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRFK---WYFALGAITTLILD 703 + + I+++ + +G +II + +Y+ + + + L IT L Sbjct: 849 STLPHGYDYDFAGITKDEVDQGNQALIIFIVCLTFVYLILSAQYENFLLPLPIITCLPAG 908 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I T F L G+E N+ A A++ LIG + V++ + ++ + S R + Sbjct: 909 ICGTFIFLKLTGLENNIYAQVAMVMLIGLLGKNAVLMVE---YAVQRHNLGKSIRAAAIE 965 Query: 764 SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820 + TS A +LP+ G I + A G++ + + + Sbjct: 966 GAAARFRPILMTSFAFIAGLLPLVFAHGAGAIGNRTIGTAAAGGMLFGTCFGLILVPGLY 1025 Query: 821 LFIYD 825 Sbjct: 1026 YIFGR 1030 >gi|285017901|ref|YP_003375612.1| rnd superfamily protein [Xanthomonas albilineans GPE PC73] gi|283473119|emb|CBA15625.1| probable rnd superfamily protein [Xanthomonas albilineans] Length = 1042 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 71/684 (10%), Positives = 193/684 (28%), Gaps = 53/684 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I G + ++++P P + + Sbjct: 9 RPIFAWVLAICIMAAGAIAVF-----TLPVEQYPDIAPPT-------------VNVSATY 50 Query: 63 DDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + ++ + +K S Q +I+++F + +V Sbjct: 51 NGASAQTVEDSVTQVIEQQIKGIDHLLYFSSTSSSSGQARISITFDQGANPDIAQVQVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + ++L + ++ + + S+++ ++ S ++ D I Sbjct: 111 AVNQALNRLPQEVQQQGVTVAKSQGDSLMVVALYDTTDKLDNVDISDFLVSTLQDPISRI 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L + + + N G Sbjct: 171 DGVGEINVFGAQ-YAMRVWLDPHKLDAYKLMPSDVRSAILAQNTQVTAGELGALPTVADQ 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + I + Sbjct: 230 ALNATVTAQSRL-------------QTPEQFRNIILATREDGSSVRLGDVARVEIGAENY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + L + + + + T + L++ P + Sbjct: 277 QNTTTLNGHPASGFSLTLSSGANALATSDAVRATIERLKSTFPPGVKVAYPRDSTPFVRV 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + G+ L+ ++ + ++ T +L+ G T+ ++ Sbjct: 337 SIEGVVHTLVEAILLVVVVMFLFLQNGRATLIPAITVPVVLLGTFGILAAAGFTINTLTL 396 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + + + Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMHEQHLSPREATECSMGEITGALVGITVVLGAVFLP 456 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------KKMKSIDI 525 + FFGG R F+IT+ ++ +S A+++ A+ +++ + + + Sbjct: 457 MAFFGGSTGIIYRQFSITIASAMALSALVALTLTPALCATLLKPVEQERKLSRFFQWFNR 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + + R R W +++ + T ++ +G +Q+ Sbjct: 517 SVERGQDAYQRRLDTLLRRPRRWMALYALVVLAMVVLYARTPTGFLPVEDQGQVQIQFTT 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 L+ ++L + + N ++ + + Sbjct: 577 PEGTPLA----KTQALGKRIGDYFMTHEKDNLTAIFMVIGRNNAGIGQNAGQAFLALKPW 632 Query: 646 VPLSTIQNTEIVGPKISRELIRKG 669 + + + + + G Sbjct: 633 GERNRDNTAQAIIDRANAYFRDSG 656 Score = 74.3 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 96/264 (36%), Gaps = 6/264 (2%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 F+ I V L V + + + +++A + Sbjct: 246 QFRNIILATREDGSSVRLGDVARVEIGAENYQNTTTLNGHPASGFSLTLSSGANALATSD 305 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YF 692 + +++ P R I + ++ + + +++ +++ + Sbjct: 306 AVRATIERLKSTFPPGVKVAYPRDSTPFVRVSIEGVVHTLVEAILLVVVVMFLFLQNGRA 365 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L T+ + + T G A G N + A++ IG V+D +VV + + ++ Sbjct: 366 TLIPAITVPVVLLGTFGILAAAGFTINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMHE 423 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809 +S R+ + S+ E G V ++ LPMA +GGS F+I +A + ++A Sbjct: 424 QHLSPREATECSMGEITGALVGITVVLGAVFLPMAFFGGSTGIIYRQFSITIASAMALSA 483 Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833 ++ + + + + ++ Sbjct: 484 LVALTLTPALCATLLKPVEQERKL 507 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 9/157 (5%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 I S + + + + ++ W + + + L + T+ L G ++ +LT IG Sbjct: 873 IASILFIFLCLAALYESWSVPVAVLLVIPLGVLGTVTATTLAGFVNDIYFQVGLLTTIGL 932 Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789 S + +++ + + + + L V TS+A VLP+A+ Sbjct: 933 SAKNAILIV----EFAESGQRAGRPLLEAALEGARLRLRPIVMTSLAFVAGVLPLALSTG 988 Query: 790 -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 G + + + G++ + +I + + + Sbjct: 989 AGAASRREIGVSVIGGMLFGTALAILLVPLFFVLVRR 1025 >gi|262369363|ref|ZP_06062691.1| multidrug efflux protein AdeJ [Acinetobacter johnsonii SH046] gi|262315431|gb|EEY96470.1| multidrug efflux protein AdeJ [Acinetobacter johnsonii SH046] Length = 1059 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 61/554 (11%), Positives = 153/554 (27%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L L + ++P+ P + + Sbjct: 8 RPIFAWVIALVVMLAGVLS-----LTTMPVAQYPTIAPPV-------------VTIAATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAQTVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASINLNFEQGIDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVKVTKSGASFMQVLAFYSPDGSLSGADINDYVNSNISEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP+++ L T + ++ N G Sbjct: 170 AGVGELQVFGGQ-YAMRIWLDPAKMNSLQVTPSDIAAAIRAQNAQVAVGQLGGAPSVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + + Sbjct: 229 VLNATVNAQSML-------------QTPEQFKNIFLKNTSSGAQVRLSDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + LR + + Sbjct: 276 QFDSKFNGKAAGGVAIKLATGANALDTAAAVEKRLSELRKNYPNGLKDQLAYDTTPFIEL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIKSVVKTLIEAIILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL----DMGFSRAYSTIFDSNITALIA 473 +VL IGL VD I+V E + + + S A I + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMVEEHLDPVAATEKSMKQISGALVGITSVLTAVFVP 455 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 G R F+IT+ ++++S+ A++ A+ +++ + N + F Sbjct: 456 MAFFAGTTGVIYRQFSITLVTAMILSLIVALTFTPALCATLLKQHDPNKAESNNIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 + + + ++ Sbjct: 516 RWFNSSFEKLSVKY 529 Score = 81.3 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 94/286 (32%), Gaps = 8/286 (2%) Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610 S+ + + + L FK + V LS V + Sbjct: 222 APSVQGQVLNATVNAQSMLQTPEQFKNIFLKNTSSGAQVRLSDVARVELGSDNYQFDSKF 281 Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670 + +++ +E ++ + P I+ + Sbjct: 282 NGKAAGGVAIKLATGANALDTAAAVEKRLSELRKNYPNGLKDQLAYDTTPFIELSIKSVV 341 Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 +I + I + I +++ + W + + + + T +FG N + A++ Sbjct: 342 KTLIEAIILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTMFAMVLA 401 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV-YTSMAAFISVLPMAV 788 IG V+D +VV + + + + +KS+ + G V TS+ +PMA Sbjct: 402 IGLLVDDAIVVVENV--ERVMVEEHLDPVAATEKSMKQISGALVGITSVLT-AVFVPMAF 458 Query: 789 WGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + G VI F+I + ++++ ++ + + N Sbjct: 459 FAGTTGVIYRQFSITLVTAMILSLIVALTFTPALCATLLKQHDPNK 504 Score = 67.0 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 72/244 (29%), Gaps = 13/244 (5%) Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658 E + + S +E + K+ + + Sbjct: 810 EWTYGSPRLERYNGVSSVNIQGTPAPGVSSGDAMLAMEEIIGKLPSMGLQGFDYEWTGLS 869 Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL----- 713 + + + V+ I L + W + + + L I L Sbjct: 870 LEERDSGNQTAPLLVLSMLIVFLCLAALYESWSIPVSVLLVVPLGILGAFALTWLGMIIK 929 Query: 714 --FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 + FN+ A++ +IG S + +++ + ++ L D + L Sbjct: 930 GDPNLSFNIYFQVAIVAVIGLSAKNAILIVEFAKE---LQEQGEDLFDATLHAAKMRLRP 986 Query: 772 SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + T++A VLP+A+ G S + G++ + IF ++I Sbjct: 987 IIMTTLAFGFGVLPLALSTGAGAGSQHSVGFGVLGGVISSTLLGIFFIPVFFVWIRSIFK 1046 Query: 829 KNAR 832 + Sbjct: 1047 YKPK 1050 >gi|225851839|ref|YP_002732072.1| hydrophobe/amphiphile efflux protein [Brucella melitensis ATCC 23457] gi|256264645|ref|ZP_05467177.1| acriflavin resistance protein [Brucella melitensis bv. 2 str. 63/9] gi|225640204|gb|ACO00118.1| transporter, hydrophobe/amphiphile efflux-1, HAE1 family protein [Brucella melitensis ATCC 23457] gi|263095014|gb|EEZ18722.1| acriflavin resistance protein [Brucella melitensis bv. 2 str. 63/9] gi|326408334|gb|ADZ65399.1| hydrophobe/amphiphile efflux protein [Brucella melitensis M28] gi|326538049|gb|ADZ86264.1| transporter, hydrophobe/amphiphile efflux-1, HAE1 family protein [Brucella melitensis M5-90] Length = 1051 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 71/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P RL Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDRLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E++ I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 82/266 (30%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+ + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLTFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1007 MLAATFIAAFFIPMFYSLIARKPPKK 1032 Score = 48.9 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 63/540 (11%), Positives = 140/540 (25%), Gaps = 61/540 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGLA + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++T ++ V L G + + +L + F A + I R K Sbjct: 974 TSLTFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIAAFFIPMFYSLIARKPPKKH 1033 >gi|284052555|ref|ZP_06382765.1| preprotein translocase subunit SecF [Arthrospira platensis str. Paraca] Length = 304 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 67/256 (26%), Positives = 134/256 (52%), Gaps = 7/256 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + P++++ VR L++ +G S Q D + R ++ + Sbjct: 37 NCDGPIEINQVREVLQAQDLGSSSIQLLDKDPIQRDRQIVSVRTKNLNVDERTQLEAALR 96 Query: 644 EIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 E + + VGP + R++ G+ ++++ + +Y+ RF++ +A+ A L Sbjct: 97 EAIGVFDPLATQIDTVGPTLGRQIFTSGLKALLVAFAGITLYLTFRFQFDYAVFAFVALF 156 Query: 702 LDITKTLGFFALFGIEF----NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757 D+ T+G F++FG+ F + + A+LT+IG+SVND VV+YDR+R+ +K S Sbjct: 157 HDVILTMGVFSIFGLVFGLEADTLFLVALLTIIGFSVNDTVVIYDRIREILKQMP-DAST 215 Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817 +++D ++N+TL RS+ T++ + + + ++GG + FA+ + G + + SSIFIA+ Sbjct: 216 GEVVDNAVNQTLARSINTTVTTILPLFCIFLFGGETLKYFALTLIIGFIAGSYSSIFIAS 275 Query: 818 PILLFIYDWRAKNARI 833 +L + D +A + I Sbjct: 276 TLLGWWRDRQASKSTI 291 >gi|160876534|ref|YP_001555850.1| preprotein translocase subunit SecD [Shewanella baltica OS195] gi|160862056|gb|ABX50590.1| protein-export membrane protein SecD [Shewanella baltica OS195] gi|315268728|gb|ADT95581.1| protein-export membrane protein SecD [Shewanella baltica OS678] Length = 604 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 165/527 (31%), Positives = 276/527 (52%), Gaps = 34/527 (6%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 + ++ P L S+ PS + I LGLDLRGG +L+VD D + Sbjct: 94 TLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGE 153 Query: 72 MYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 D LR F++++ I S+ Q N++ L+ D+ + + + Sbjct: 154 ALVDSLRQFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQ------- 206 Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 L T + I LSQ ++ + ++Q+++++R RI+++GI+E+ +QR G HRI Sbjct: 207 ----LSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGDHRIR 262 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 I+LPG QDP+ + ++G TA ++F +V L D G V + Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLNDKSGKPIYVSRTPVLG 317 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR--------- 301 G H+ A A+ V+I+ D +G ++ E +R NIGKP+A Sbjct: 318 GDHIVDARASLGEMGM-AEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDELGKAK 376 Query: 302 ---VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 + + Q+ + +I+G T + A LA +LRAGS+ + IVEER +G LG+ Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417 ++I G A+ G+ + +LFM + Y + G VA+ ++ N+++ LL+L+ A LTLP I Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG+VL +G+AVD+N+L+ ERI+++ ++ +S ++D GF A+STIFD+N T +I VVL Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 + G G ++GFA+T+GL +L SMFT I RA++ + + + Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603 Score = 120 bits (301), Expect = 8e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 90/260 (34%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G + + S + + ++ L G Q Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDELGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I G + + L+++ + ++ Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R++ +K Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID + + I+ + + G I FA+ + G++ + Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + ++ +Y A Sbjct: 581 TGIFASRALINLVYGRDASR 600 >gi|288803840|ref|ZP_06409266.1| HAE1 efflux family protein [Prevotella melaninogenica D18] gi|288333674|gb|EFC72123.1| HAE1 efflux family protein [Prevotella melaninogenica D18] Length = 1066 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 77/593 (12%), Positives = 172/593 (29%), Gaps = 45/593 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +++ +I IG+L L + +FPS P +++ + Sbjct: 7 RRPVLSIVVSLVIAFIGILS-----LSNLPITQFPSISPPK-----------VNVI--AN 48 Query: 62 EDDFVNGF-LQMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 N ++ L L G+ + ++ + F A V Sbjct: 49 YPGANNELLVKSVIIPLEQALNGIPGMKYIESNAGNDGEAELNVVFKLGTDPNVDAVNVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + +KL + + + + E+ ++ D ++ Sbjct: 109 NRVSSATNKLPAEVIREGVKISREEPNILMYINLYSDDPKVDQGFLYNYFDINISPELLR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + P ++ +T +S N G + Sbjct: 169 VDGVGDLDILGTRNYAMRVWLHPDKMIAYGLSTDDVSDALEDQNIEVSPGKLGESGGQCP 228 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 +Y+++ + + I ++ V Sbjct: 229 QVKEYVLKYPGRYTTED-------------EYKNIIIKSNKDGNIVRLKDIADVHLGSEV 275 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + I A L+ + Sbjct: 276 YDIYSTFNGRPSAAVTLKQAYGSNARNVITKVKDAMAHLQKDMPKGMHYEISYDVSRFLD 335 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV IV+F+ + + ++ ++ ++++ + + L TL + S Sbjct: 336 ASIEKVIHTLFEAFILVAIVVFIFLGDWRASIIPIMAVPISLLGSFIAMMLFNITLNMIS 395 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + +V+ IG+ VD I+V E + E +N+ S + + I ++ + Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVEISRNKLSPVEATEKAMKEISGAIIAISLVMASVFI 455 Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 + F G G R F+ITM SIL S F A+++ A+ I+ ++ + + + R Sbjct: 456 PVAFMGGPEGMFYRQFSITMASSILFSGFVALTLTPALCALILTKEQENHVKLGFIGRVL 515 Query: 533 LIPDCIAIQFMRARFWGVG-----ISILFSICSICLLFTHGLNYGIDFKGGIQ 580 + R + S+ + + + +N G+ Q Sbjct: 516 QRFNAKFDSGSRKYERLIQHTVKKKSLTIILILVFCGLAYWINMGLPSGFIPQ 568 Score = 97.1 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 105/284 (36%), Gaps = 10/284 (3%) Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617 + + + +N+ ++ ++ + ++ Sbjct: 227 CPQVKEYVLKYPGRYTTEDEYKNIIIKSNKDGNIVRLKDIADVHLGSEVYDIYSTFNGRP 286 Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVI 674 + + V+ VK + + + +SR L I K I + Sbjct: 287 SAAVTLKQAYGSNARNVITKVKDAMAHLQKDMPKGMHYEISYDVSRFLDASIEKVIHTLF 346 Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 + I + I ++I W ++ I + + + + LF I N+ ++ A++ IG Sbjct: 347 EAFILVAIVVFIFLGDWRASIIPIMAVPISLLGSFIAMMLFNITLNMISLFALVMAIGIV 406 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792 V+D +VV + + N+++ +S + +K++ E G + S+ +P+A GG Sbjct: 407 VDDAIVVIEAV--NVEISRNKLSPVEATEKAMKEISGAIIAISLVMASVFIPVAFMGGPE 464 Query: 793 --VIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833 F+I MA I+ + ++ + + L + + + ++ Sbjct: 465 GMFYRQFSITMASSILFSGFVALTLTPALCALILTKEQENHVKL 508 Score = 44.3 bits (102), Expect = 0.096, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 73/224 (32%), Gaps = 12/224 (5%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + V S S ++ + +I+ N A + E+ ++ + + Sbjct: 796 QMVPYSDFMSLSKTYGMSEITRHNLYNSSEVTGAQAPGYSSGQALQAIQEVAQRSLPK-G 854 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 + IV ++ + + + + +++ + L I L + I Sbjct: 855 YDYDWAGISKDEAEQGN----TAIVIFVVCLVFVYLILAAQYENFLLPLPVIIFLPVGIF 910 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 F G+E N+ A A++ LIG + V++ + ++ + Sbjct: 911 GAFLFLKACGLENNIYAQIALVMLIGLLGKNAVLMVE---YAVQRKNAGERISQAAISAA 967 Query: 766 NETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIV 806 + TS+A ++P+ G I + G+V Sbjct: 968 IARFRPILMTSIAFIAGLIPLVFASGAGAIGNRTIGTAAVGGMV 1011 >gi|300937393|ref|ZP_07152228.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 21-1] gi|300457567|gb|EFK21060.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 21-1] Length = 1034 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINDKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 ++ + + + + +++ + + L + +G Sbjct: 515 VNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 75/200 (37%), Gaps = 6/200 (3%) Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 + ++ ++ P + I + + + + + + + +++ + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L + + + T A FG N + ++ IG V+D +VV + + Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ER 418 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805 + + ++ +KS+++ G V +M +PMA +GGS F+I + + Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 806 VVAASSSIFIAAPILLFIYD 825 ++ ++ + + + Sbjct: 479 ALSVLVALILTPALCATLLK 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|251772533|gb|EES53099.1| SecF export membrane protein [Leptospirillum ferrodiazotrophum] Length = 315 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 152/301 (50%), Gaps = 5/301 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH---GLNYGIDFKGGIQLGVLANR 587 F + +I FM + +G+S L + + L N GIDF GG L V +R Sbjct: 1 MFELIRNPSIDFMGKKKISLGLSSLLVLIGLFALLQIARGQANLGIDFTGGTALLVHFDR 60 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 P +S VR+ L QN +G + +R++ + + + T L + P Sbjct: 61 PEPISEVRAVLSGNGFSGAQIQNVNGTSDLFIRVKARSESAHSVTESLLALLHGHFAGNP 120 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707 L+ Q+ E +GP I EL K +V + S + ++YI +RF++ F L A + ++ Sbjct: 121 LTIRQSIE-IGPTIGSELAGKALVAIFFSLVGFILYIAVRFEFRFGLAAAISTFHNVIAV 179 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 LG L +E NL V ++LTL GYS+ D VVV+DR+R+ M+ + LI+ IN+ Sbjct: 180 LGILYLLHVEINLLIVTSLLTLAGYSLTDTVVVFDRIREQMRRSVR-QTPEALINSGINQ 238 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 L R+V S+ + + + + GG VI F++ + G++V +SIF+A+P+LL + R Sbjct: 239 VLSRTVVVSLTVELVLFALLIGGGPVIHDFSLALFIGVLVGTYASIFVASPLLLILPGRR 298 Query: 828 A 828 Sbjct: 299 K 299 >gi|295097755|emb|CBK86845.1| The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 1037 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 71/684 (10%), Positives = 184/684 (26%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +L ++ G L L + + ++P+ P Sbjct: 7 QRPVFAWVLAIILMIAGGLAIL-----KLPVAQYPTIAPPAV---------AVTATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + N ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGNVTITLTFESGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + S + D I + Sbjct: 113 LAMPLLPQEVQQQGIGVEKSSSSFLLVAGFVSDNKNLTQDDISDYVASNVKDAISRTSGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + + + T + N+ G Sbjct: 173 GDVQLFGAQ-YAMRIWLDSNAMNKYQLTPLDIINQLKTQNDQIAAGQLGGTPSVPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KSPEEFGRVTLKVNQDGSMVHLKDVARIELGGENYNMV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + T A L+ + S Sbjct: 279 TKINGQAATGLGIKLATGANALDTAAAIKSKLAQLQPFFPQGLKVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + +++ + + + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMVEDKLPPKEATQKSMEQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526 FGG R F++T+ ++ +S+ A+ + A+ + + + Sbjct: 459 FGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCATLLKPVSSEHHEKKGGFFGWFNAL 518 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + ++ + + + I+ ++ L + +G V Sbjct: 519 FDKSVEHYSNSVSGILRKTGRYLLVYVIIVGGMAVLFLRLPSSFLPEEDQGVFMTMVQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ +Q ++ + + E F V G +K Sbjct: 579 AGATQMRTQQVLDQVQDYYLTKEKANVESVFTVNGFSFSGQGQNSGIAFVSLKPWEERPG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 + ++ K ++ + Sbjct: 639 KENGVEAIVSRATKAFSQIKDGLV 662 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 83/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + ++ + L +++ ++ ++ Sbjct: 258 SMVHLKDVARIELGGENYNMVTKINGQAATGLGIKLATGANALDTAAAIKSKLAQLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + L + + + Sbjct: 318 PQGLKVVYPYDTTPFVKISIHEVVKTLFEAIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEDKLPPKEATQKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V +M +PMA +GGS F++ + + ++ ++ + + Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 60.5 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 69/193 (35%), Gaps = 7/193 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G+S E + + L + + G L + IS I + + + Sbjct: 828 GESAPGKSTGEAMALMESLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L ++ G+ ++ +LT IG S + +++ + Sbjct: 888 AALYESWSIPFSVMLVVPLGVIGALLAASMRGLNNDVYFQVGLLTTIGLSAKNAILIVEF 947 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + M + ++ L + TS+A + V+P+ + G + Sbjct: 948 AKDLMDKEGKG--IIEATLEASRMRLRPILMTSLAFILGVIPLVISSGAGSGAQNAVGTG 1005 Query: 801 MAFGIVVAASSSI 813 + G++ A +I Sbjct: 1006 VMGGMLSATLLAI 1018 >gi|83955082|ref|ZP_00963738.1| Cation/multidrug efflux pump, RND family protein [Sulfitobacter sp. NAS-14.1] gi|83840411|gb|EAP79584.1| Cation/multidrug efflux pump, RND family protein [Sulfitobacter sp. NAS-14.1] Length = 1037 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 78/684 (11%), Positives = 187/684 (27%), Gaps = 40/684 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I IG+L L + ++P P + Sbjct: 8 RPIFAWVISIFIMGIGVLSIL-----NLPVAQYPQIAPPSV---------AVRASYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L S ITL+F + +V L Sbjct: 54 AQTVANTVTQVIEQQMTGLDGLRYISSSSTSEGGASITLTFETGTDVDIAQVQVQNKLSQ 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 ++ L ++ + +++ + A + + +++I E Sbjct: 114 ASALLPEPVQRQGITVQKSSAGFLMVIGLIGENGKYDATDLGDYMQSNLVNEISRVEGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L T + + N FG R + Sbjct: 174 SVQVFGAQ-YAMRIWLDPVKLAAFELTPSDIVAAVSAENAQISAGSFGSRPAVEGQALNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + E + Sbjct: 233 TITAQSLLT-------------SPEDFRQIVLRAETDGGLVLLNDVARVEIGSESYATIS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 S + T L A +V S Sbjct: 280 RYNRNAATGMAVSLAPGANALDTAAAVEQRIEELSAFFPEGVSYVVPFDTTPFVKISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV IV+++ + + L+ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VIKTLIEAIVLVFIVMYLFLQNIRATLIPTLAVPVVLLGTFGVLAAFGFSINTLTMLGMV 399 Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479 L IGL VD I+V E + + + + + I + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEHIGPLEATRKSMDQITGALIGIAVVLSAVFVPMAFF 459 Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDINPLSR 530 G + F+IT+ ++ +S+ A+++ A+ +++ + + Sbjct: 460 PGSTGVIYKQFSITIISAMTLSVVVALTLTPALCASLLKQGSHEKRRGFFGLFNRGFDKT 519 Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 + R G+ + + + T + +G + V A Sbjct: 520 LGGYTGTVGWLVRRPLRVGLVYLAIIAAMVFLFMRTPAGFLPAEDQGTLFTLVQAPTGAT 579 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ ++ + + E F V G V +K + Sbjct: 580 AERTLEVIKQVENYYLENEGDVVESVFGVVGFSFAGQGQNLGLVFVRLKDWEQRTEAAQS 639 Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674 +Q ++ + ++ Sbjct: 640 VQAVAGRAFGAFSQIQDAMVFPIV 663 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 87/248 (35%), Gaps = 6/248 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L+ V + + + +++ +E ++++ P Sbjct: 260 VLLNDVARVEIGSESYATISRYNRNAATGMAVSLAPGANALDTAAAVEQRIEELSAFFPE 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + I +I + + + I +++ + L + + + T Sbjct: 320 GVSYVVPFDTTPFVKISIEEVIKTLIEAIVLVFIVMYLFLQNIRATLIPTLAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G A FG N + ++ IG V+D +VV + + + I + KS+++ Sbjct: 380 FGVLAAFGFSINTLTMLGMVLAIGLLVDDAIVVVENV--ERIMEQEHIGPLEATRKSMDQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + ++ +PMA + GS F+I + + ++ ++ + + + Sbjct: 438 ITGALIGIAVVLSAVFVPMAFFPGSTGVIYKQFSITIISAMTLSVVVALTLTPALCASLL 497 Query: 825 DWRAKNAR 832 + R Sbjct: 498 KQGSHEKR 505 Score = 48.9 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 9/135 (6%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + + + I TL L G E + +LT++G + + +++ + R Sbjct: 889 SWSIPFAVMLAMPIGILGTLTGAYLGGFENGVFFQVGLLTVVGLTGKNAILIVEFARD-- 946 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808 S + + + TSMA + VLP+ + G+ + G++ Sbjct: 947 -RRQEGESIFGAAVDAARQRFRPIIMTSMAFSLGVLPLVLSTGAG-SGGRTAIGAGVLAG 1004 Query: 809 ASSSIFIAAPILLFI 823 IAA +L + Sbjct: 1005 T-----IAATVLGVL 1014 >gi|83748929|ref|ZP_00945939.1| Transmembrane drug efflux protein [Ralstonia solanacearum UW551] gi|83724428|gb|EAP71596.1| Transmembrane drug efflux protein [Ralstonia solanacearum UW551] Length = 1051 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 82/684 (11%), Positives = 181/684 (26%), Gaps = 39/684 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L + ++PS P Sbjct: 8 RPIFAWVLAIIVMLAGALSIA-----TLPIAQYPSIAPPAV---------AITATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ L + + ITL+F + + +V L Sbjct: 54 AKTLEDTVTQIIEQKMKGLDHLSYMASTSESSGSVTITLTFENGTDPDTAQVQVQNKLAL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + + + + + S + D I E Sbjct: 114 ATPLLPQEVQQQGVQVTKSATNFLNVLAFTSEDGSMNGSDLSDYVAANVQDAISRVEGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G + Sbjct: 174 DTTLFGSQ-YAMRIWLDPNKLSNFSLTPLDVKTAIQAQNAQVSAGQLGAMPALGNQQINA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + + + I Sbjct: 233 TITSQTRL-------------KTVEEFGNILLRTQTDGAQVRLRDVARIELGSENYNTVG 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T++ A L P S Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFPPGMKVQKPYDTTPFVRISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +L+ G T+ ++ +V Sbjct: 340 VVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAACGFTINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQITGALVGVALVLAAVFVPMAFF 459 Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G R F+IT+ ++ +S+ A+ + A+ + +K + Sbjct: 460 KGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCATL-----LKPVKKGHAQATTGFFGW 514 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 F R GI S + +G+ + + G ++L V D + Sbjct: 515 FNRTFDRGNHRYQGIVRHMLGKSRRYMAVYGVLFALVVVGFMKLPVGFLPDEDQGTLF-V 573 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L L G + + D + ++V+ + + Sbjct: 574 LAQLPPGATNARTEDVIRQVEHHFLVDQKEAVSGVFSVAGFSFAGSGQNMGFAFVKLRPW 633 Query: 658 GPKISRELIRKGIVGVIISAIAML 681 + L G+V A L Sbjct: 634 NERKGEALSVNGVVAKAFGFFATL 657 Score = 77.0 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 85/246 (34%), Gaps = 6/246 (2%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V L V + + + L +++ + ++ ++ P Sbjct: 259 QVRLRDVARIELGSENYNTVGRYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFP 318 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706 R I + + ++ + + + +++ + + L + + + Sbjct: 319 PGMKVQKPYDTTPFVRISIEEVVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLG 378 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T G A G N + A++ IG V+D +VV + + + + ++ KS+ Sbjct: 379 TFGVLAACGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSMG 436 Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + G V ++ +PMA + GS F+I + + ++ ++ + + + Sbjct: 437 QITGALVGVALVLAAVFVPMAFFKGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCATL 496 Query: 824 YDWRAK 829 K Sbjct: 497 LKPVKK 502 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 60/170 (35%), Gaps = 11/170 (6%) Query: 668 KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFN-LTAV 723 G ++ + + +++ + W I + L + L A+ + N + Sbjct: 869 TGQTTLLYTLSILFVFLCLAALYESWAIPFSVIMVVPLGVLGAL-IGAILTWKMNDVYFQ 927 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 +LT IG + + +++ + + L+ + + + L + TS+A + V Sbjct: 928 VGLLTTIGLASKNAILIVEFAKD---LHAQGMRLAEAAMTAARMRLRPILMTSLAFILGV 984 Query: 784 LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 LPM G + + G++ +IF + + + Sbjct: 985 LPMVTGSGAGAGAQHALGTAVIGGMLSGTVLAIFFVPLFFVLVRGLFRRK 1034 >gi|108761223|ref|YP_633187.1| HAE1 family efflux transporter [Myxococcus xanthus DK 1622] gi|108465103|gb|ABF90288.1| efflux transporter, HAE1 family, inner membrane component [Myxococcus xanthus DK 1622] Length = 1048 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 69/537 (12%), Positives = 156/537 (29%), Gaps = 32/537 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + ++ ++ +GL+ P + ++P P Sbjct: 8 RRPVFAIVCSILLTLVGLIAI-----PTLPIAQYPDLAPPQVT---------VTSTYVGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120 + V + + ++ + ++ + ++IT++F +R E A V + Sbjct: 54 SAEVVESAVTIPLEQELNGVEGMRYITSTSSNDGTSQITITFEATRDIEVAAVDVQNRVS 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 ++L + +V ++ + A S D I Sbjct: 114 RAAARLPSQVNQTGIVVNKASSQMLLTVGLFSEDNRYDAKFLSNYADVSLKDAIKRVPGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP+ L + T ++ N G + Q Sbjct: 174 GDVRIFGERKFSMRLWLDPTELARRKLTPQDVTRALQEQNLQVAAGQIGQPPSTEDQPYQ 233 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 V + + + + + + + Sbjct: 234 IAVRARGRL-------------VEPAEFGDIVLMRDTDGTSIRVKDVGRVELGAENYGSV 280 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + L P A S + Sbjct: 281 LRFNGKTGVGLGIFQLPTANALDVRDGVYAELERLSKQFPPGMQFQTGTDTTLAVRASIN 340 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV++V+F+ + + L+ F++ +++I T A + L+G ++ ++ G+ Sbjct: 341 EVIKTLVEAIVLVILVIFLFLHGWRSVLITAFTLPVSLIGTFAFVHLMGFSINTLTLFGL 400 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIATVV 476 L GL VD I+V E I + + S + G A I + + + Sbjct: 401 TLATGLVVDDAIVVIENIERLMVERRLSPVQAAREGMKEVTGAVIAISVVLVAVFVPVAL 460 Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 G R FA+T+ S+ +S F A+++ A+ ++++ + L Sbjct: 461 FPGTTGAIYRQFALTIAASVALSTFCALTLTPALSAKMLKHHEGPKWVFFRWVDTVL 517 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 75/190 (39%), Gaps = 8/190 (4%) Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 LE + K+ + T +T + E+I+ + +++ + + +++ W Sbjct: 310 AELERLSKQFPPGMQFQTGTDTTLAVRASINEVIKTLVEAIVLVILVIFLFL---HGWRS 366 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L TL + + T F L G N + + G V+D +VV + + + Sbjct: 367 VLITAFTLPVSLIGTFAFVHLMGFSINTLTLFGLTLATGLVVDDAIVVIENI--ERLMVE 424 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809 +S + + E G + S+ +P+A++ G+ FA+ +A + ++ Sbjct: 425 RRLSPVQAAREGMKEVTGAVIAISVVLVAVFVPVALFPGTTGAIYRQFALTIAASVALST 484 Query: 810 SSSIFIAAPI 819 ++ + + Sbjct: 485 FCALTLTPAL 494 Score = 57.4 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 57/147 (38%), Gaps = 6/147 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + L I ++ L I LG G ++ ++ L+G + + +++ + + + Sbjct: 890 SFSLPLVIIFSVPLAIMGALGLQLARGFANDVFCQVGLVMLVGLASKNAILIVE-FAEQL 948 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805 + S D + ++ L + TS+A + V+P+ G + S + G+ Sbjct: 949 REG--GKSAIDAVVEAAEVRLRPILMTSIAFLLGVVPLMTASGAGAASRNSLGTAVFGGM 1006 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832 +V+ + + + + R R Sbjct: 1007 LVSTVVNFVFIPGLYVLMQKLRGDAKR 1033 >gi|37676738|ref|NP_937134.1| putative acriflavin resistence protein [Vibrio vulnificus YJ016] gi|37201281|dbj|BAC97104.1| putative acriflavin resistance protein [Vibrio vulnificus YJ016] Length = 1050 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 76/692 (10%), Positives = 184/692 (26%), Gaps = 48/692 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + + +P P + + Sbjct: 8 QRPKFALVISIILTLAGAIALAV-----LPVAEYPKISPP-------------SVSVTAY 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 ++ D + + + E + S + + + ++F + V Sbjct: 50 YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + SKL + + + +++ I DQ+ Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + + DP ++ L TT+ + N G + Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYSALSQQNVQVAAGRIGAAPYNNP 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ + K + + + + + Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANPDGSSVYLKDVARVELGKKF 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + S ++ + + + L L Sbjct: 277 YDGNGKFRGRDASIVALSLQSDANALESGQAVMELLERLSGNFPEGMAYETSYDTTVFVA 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV+ V ++ + + L+ +I +++I T A++ G T+ + Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMLATGFTINTVT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471 + G++L IG+ VD ILV E + K+ S + M I S + Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVF 456 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525 + +L G R FA+T+ +S++IS A+++ A+ + K+ + Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLAPALCSLVLKQGGENTANWFKTFNR 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 ++ + + + T + KG + + V Sbjct: 517 GLERVTERYGQVAGFLVKKSLLLVAFFMVAVAAVAFFAKTTSTAFVPQEDKGILLVNVQL 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 LS L DG + + + Sbjct: 577 PDSASLSRTEEVTNHLLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRN 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + + +I+ + V+ + Sbjct: 637 GLN-GNHSANAIAQRINGRAAMELPQAVVFAM 667 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 77/197 (39%), Gaps = 7/197 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 A +LE + E + T +T + + + +++ I +++ +++ Sbjct: 303 ESGQAVMELLERLSGNFPEGMAYETSYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLG 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 L + + + + T G N + ++ IG V+D ++V + + Sbjct: 363 ---SARATLIPVVAIPVSLIGTFAVMLATGFTINTVTLFGLILAIGIVVDDAILVIENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 SIS R ++ E G + +++ LP+A+ G FA+ + Sbjct: 419 DTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTIC 478 Query: 803 FGIVVAASSSIFIAAPI 819 +V+++ +++ +A + Sbjct: 479 ISVVISSINALTLAPAL 495 Score = 48.5 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 48/407 (11%), Positives = 106/407 (26%), Gaps = 23/407 (5%) Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LL P + G+ + G + + + + + + G A + Sbjct: 592 LLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRNGLNGNHSANAIAQRI 651 Query: 467 NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521 N + V+F G AV G G ++ S + M I + Sbjct: 652 NGRAAMELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMGEMIQAANQAP 711 Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 I + +P L + +N F ++ Sbjct: 712 EIAYTFSTFRANVPHYYVDIDREKAQQLGIPLSSIFQTLQGNLGSMYVNDFTMFGKNFRV 771 Query: 582 GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + A+ V S S + D + + Sbjct: 772 TMQADSEHRSSMDDLSRFHVRTSSGEMVPLSTLLSYEQVFEPDVAWRYNMYRSAIIQGQP 831 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685 A + I Q ++ + + G + + + IY + Sbjct: 832 APGYSSGDAIAAMERIAAELLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L I + + + L G NL A ++ LI + + +++ + + Sbjct: 892 QYESWTIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 + ++ + + TS + + + P+ G+ Sbjct: 952 --QQREEKEVAIDEAAVQGGKLRFRAVNMTSWSFILGIFPLIFAAGA 996 >gi|89092657|ref|ZP_01165610.1| Hydrophobe/amphiphile efflux-1 [Oceanospirillum sp. MED92] gi|89083169|gb|EAR62388.1| Hydrophobe/amphiphile efflux-1 [Oceanospirillum sp. MED92] Length = 1037 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 68/584 (11%), Positives = 171/584 (29%), Gaps = 39/584 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +++ ++ G L L + +FP P + ++ Sbjct: 9 RPKFALVISIVLMIAGGLAIL-----SLPVAQFPDITPPK-------------VQVQAKY 50 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 ++ + + + + S + + + ++FA + A V Sbjct: 51 PGANAEVVEQAVATPIEAQVNGVDNMLYMSSKSNNDGSYSLDITFAVGTDPDQAAINVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + S L + + + T + +++ + + S D + Sbjct: 111 RVALAESSLPQEVVRQGVTTRKQATNMLLVINLFSPEGTYDELFLSNYATLYVQDALARI 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP RL+ L + + +S N + G L + Sbjct: 171 NGVGSASQFSPMDYGMRVWLDPDRLKALNMSPSDISNAISQQNIQASVGIIGQPPLTQNQ 230 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 QY + K + + + I + Sbjct: 231 QFQYNLRAKGRLESVE-------------EFENIILRTGENGASVRLRDVARVELGSQSY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 ++ + + L + + Sbjct: 278 SASSIMNGNQAATIAIYQSPGANALDVADQVYAELERLSQRFPDDMDYAILYDTTLSVKA 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T I LV++V F+ + + L+ +I +++I T A+LS+LG ++ S+ Sbjct: 338 SLQEVVETLFITFALVVLVTFLFLADWRATLIPSATIPVSLIATFAVLSVLGFSINTISL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 ++L IG+ VD I+V E ++ ++ S + + + + + L V + Sbjct: 398 FALILAIGIVVDDAIVVVENVKRHMQEGLSAKEATAVSMKEVIGPVIATTLVLLAVFVPV 457 Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 F G FA+T+ +++ S A+++ A+ +++ + + Sbjct: 458 AFMPGITGKLYTEFAVTISVAVCFSSLNALTLSPALCGLLLKPAQEPKGLFRKFDQLISW 517 Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578 + + + +S+ ++ F Sbjct: 518 TRRGYVNKVSFLNKRLLLSMGLLAAMGGGVYHMFSTTPTGFLPY 561 Score = 65.9 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 75/203 (36%), Gaps = 10/203 (4%) Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 ++E + K+ + T + +I + ++ + L + W Sbjct: 835 ALMEKLAKETLPDGYVLEWTGTTQQEQESGGYVIIIMSLAILFAY---LFLVAQYESWSI 891 Query: 693 ALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 + + ++ + + L + + G+ NL A ++ LIG + +++ + + +L Sbjct: 892 PMAVMLSITVALLGAILPLWLIPGLTNNLYAQIGIVMLIGLASKSAILIVEFAK---QLR 948 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808 + +++ N + T+ + + VLP+ G + S + G+++A Sbjct: 949 EQGKGIIEAANEAANLRYRAVLMTAFSFILGVLPLVTASGAGAASRISIGFVVLGGMLLA 1008 Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831 IF + + + R K Sbjct: 1009 TIVGIFFIPSLFVAMQSLREKLK 1031 Score = 61.2 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 85/208 (40%), Gaps = 9/208 (4%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 LE + ++ + + + + +T + +E++ + + + +++ Sbjct: 306 DQVYAELERLSQRFPDDMDYAILYDTTLSVKASLQEVVETLFITFALVVLVTFLFLA--- 362 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W L T+ + + T ++ G N ++ A++ IG V+D +VV + ++ Sbjct: 363 DWRATLIPSATIPVSLIATFAVLSVLGFSINTISLFALILAIGIVVDDAIVVVENVK--- 419 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805 + +S ++ S+ E +G + T++ +P+A G FA+ ++ + Sbjct: 420 RHMQEGLSAKEATAVSMKEVIGPVIATTLVLLAVFVPVAFMPGITGKLYTEFAVTISVAV 479 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833 ++ +++ ++ + + + + Sbjct: 480 CFSSLNALTLSPALCGLLLKPAQEPKGL 507 >gi|320158840|ref|YP_004191218.1| RND efflux system inner membrane transporter CmeB [Vibrio vulnificus MO6-24/O] gi|319934152|gb|ADV89015.1| RND efflux system inner membrane transporter CmeB [Vibrio vulnificus MO6-24/O] Length = 1050 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 76/692 (10%), Positives = 184/692 (26%), Gaps = 48/692 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + + +P P + + Sbjct: 8 QRPKFALVISIILTLAGAIALAV-----LPVAEYPKISPP-------------SVSVTAY 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 ++ D + + + E + S + + + ++F + V Sbjct: 50 YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + SKL + + + +++ I DQ+ Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + + DP ++ L TT+ + N G + Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYSALSQQNVQVAAGRIGAAPYNNP 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ + K + + + + + Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANSDGSSVYLKDVARVELGKKF 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + S ++ + + + L L Sbjct: 277 YDGNGKFRGRDASIVALSLQSDANALESGQAVMELLERLSGNFPEGMAYETSYDTTVFVA 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV+ V ++ + + L+ +I +++I T A++ G T+ + Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMLATGFTINTVT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471 + G++L IG+ VD ILV E + K+ S + M I S + Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVF 456 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525 + +L G R FA+T+ +S++IS A+++ A+ + K+ + Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLAPALCSLVLKQGGENTANWFKTFNR 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 ++ + + + T + KG + + V Sbjct: 517 GLERVTERYGQVAGFLVKKSLLLVAFFMVAVAAVAFFAKTTSTAFVPQEDKGILLVNVQL 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 LS L DG + + + Sbjct: 577 PDSASLSRTEEVTNHLLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRN 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + + +I+ + V+ + Sbjct: 637 GLN-GNHSANAIAQRINGRAAMELPQAVVFAM 667 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 77/197 (39%), Gaps = 7/197 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 A +LE + E + T +T + + + +++ I +++ +++ Sbjct: 303 ESGQAVMELLERLSGNFPEGMAYETSYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLG 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 L + + + + T G N + ++ IG V+D ++V + + Sbjct: 363 ---SARATLIPVVAIPVSLIGTFAVMLATGFTINTVTLFGLILAIGIVVDDAILVIENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 SIS R ++ E G + +++ LP+A+ G FA+ + Sbjct: 419 DTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTIC 478 Query: 803 FGIVVAASSSIFIAAPI 819 +V+++ +++ +A + Sbjct: 479 ISVVISSINALTLAPAL 495 Score = 48.1 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 48/407 (11%), Positives = 106/407 (26%), Gaps = 23/407 (5%) Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LL P + G+ + G + + + + + + G A + Sbjct: 592 LLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRNGLNGNHSANAIAQRI 651 Query: 467 NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521 N + V+F G AV G G ++ S + M I + Sbjct: 652 NGRAAMELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMGEMIQAANQAP 711 Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 I + +P L + +N F ++ Sbjct: 712 EIAYTFSTFRANVPHYYVDIDREKAQQLGIPLSSIFQTLQGNLGSMYVNDFTMFGKNFRV 771 Query: 582 GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + A+ V S S + D + + Sbjct: 772 TMQADSEHRSSMDDLSRFHVRTSSGEMVPLSTLLSYEQVFEPDVAWRYNMYRSAIIQGQP 831 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685 A + I Q ++ + + G + + + IY + Sbjct: 832 APGYSSGDAIAAMERIAAELLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L I + + + L G NL A ++ LI + + +++ + + Sbjct: 892 QYESWTIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 + ++ + + TS + + + P+ G+ Sbjct: 952 --QQREDKEVAIDEAAVQGGKLRFRAVNMTSWSFILGIFPLIFAAGA 996 >gi|283835635|ref|ZP_06355376.1| multidrug resistance protein MdtF [Citrobacter youngae ATCC 29220] gi|291068849|gb|EFE06958.1| multidrug resistance protein MdtF [Citrobacter youngae ATCC 29220] Length = 1038 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 68/576 (11%), Positives = 153/576 (26%), Gaps = 43/576 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G + L + ++P P + + Sbjct: 8 RPVFAWVLAIIMMFTGGIAIL-----NLPVAQYPQIAPPT-------------ITISAAY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117 ++ + + G+ S I L+F + +V Sbjct: 50 PGADAKTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASIILTFKTGTSPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ D + + + D + + Sbjct: 110 KLQLAMPSLPQEVQQQGISVDKSSSNILMVAGFISDNNSLSQYDIADYVASNIKDPLSRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L + T + + NN G G Sbjct: 170 PGVGSVQLFGSQ-YAMRIWLDPQKLDKYNLTPQDVIAQLKVQNNQISGGQLGGMPQSADQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + T + + + I Sbjct: 229 QLNASIIVQTRL-------------QTTDEFGKIFLKVQQDGSQVLLRDVARIELGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 A + T + L A + Sbjct: 276 ATVARYNGKPAAGIAIKLAAGANALQTSQAVKQELNRLSAWFPASMKTVYPYDTTPFIEI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+L + G ++ ++ Sbjct: 336 SIQGVFHTLIEAIILVFLVMYLFLQSFRATLIPTIAVPVVILGTFAILDVAGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM----GFSRAYSTIFDSNITALIA 473 G+VL IGL VD I+V E + + + + RA I + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERIIAEERLSPKAATHKAMGQLQRALVGIAVVLSAVFMP 455 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531 + G R F+IT+ S+L+S+F A+S+ A+ + + + Sbjct: 456 MAFMSGATGEIFRQFSITLISSMLLSVFVAMSLTPALCAMLLKPHEGEKANAHFLFTRFN 515 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 + C R + + Sbjct: 516 HFMEKCTHHYTNSTRRLLHCTGRYMVVYLVIGAGMM 551 Score = 70.9 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 81/244 (33%), Gaps = 8/244 (3%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + +++ ++ ++ +++ Sbjct: 258 SQVLLRDVARIELGAENYATVARYNGKPAAGIAIKLAAGANALQTSQAVKQELNRLSAWF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705 P S I+ +I + I + + +++ + L + + I Sbjct: 318 PASMKTVYPYDTTPFIEISIQGVFHTLIEAIILVFLVMYLFLQSFRATLIPTIAVPVVIL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + G N + ++ IG V+D +VV + + + +S + K++ Sbjct: 378 GTFAILDVAGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERIIAEERLSPKAATHKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + L R++ +V + G + F+I + ++++ ++ + + Sbjct: 436 GQ-LQRALVGIAVVLSAVFMPMAFMSGATGEIFRQFSITLISSMLLSVFVAMSLTPALCA 494 Query: 822 FIYD 825 + Sbjct: 495 MLLK 498 Score = 61.6 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 65/175 (37%), Gaps = 6/175 (3%) Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713 + + + IS I + + + ++ W + + + + L L Sbjct: 857 WTGLSYQEAQSTNQAPMLYGISLIVVFLALAALYESWSIPFSVMLVVPIGVVGALLATDL 916 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 G+ ++ +LT +G S + +++ + + M+ + ++ L + Sbjct: 917 RGLSNDVYFQVGLLTTMGLSAKNAILIVEFAVEIMQKEGKK--PLEAAVEAAQMRLRPIL 974 Query: 774 YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 TS+A + V+P+A+ G + + G++ A +I+ + + + Sbjct: 975 MTSLAFILGVIPLAISHGAGSGAQNAVGTGVIGGMLAATVLAIYFVPLFFVLVEN 1029 >gi|319787466|ref|YP_004146941.1| protein-export membrane protein SecF [Pseudoxanthomonas suwonensis 11-1] gi|317465978|gb|ADV27710.1| protein-export membrane protein SecF [Pseudoxanthomonas suwonensis 11-1] Length = 320 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 159/299 (53%), Gaps = 5/299 (1%) Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + IP I FM+ R+ + I+ L + SI + G NY +DF GG + V Sbjct: 1 MNIFPLSFIPHEPRIDFMKMRWVAIVIAALLFVGSIAGI-VKGFNYALDFTGGTVVEVRF 59 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG--DSVAQTRVLEMVKKKIT 643 + + VR L + Q+F + LVRLQ + G + A R + V ++ Sbjct: 60 AQSTPVDQVRERLAAAGYDGAQVQSFGSGSDVLVRLQPRDGETTTDANNRTAQDVLAAVS 119 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 +T+ TE VGP++ REL G+ I + LIYI RF++ FA+ A T + D Sbjct: 120 TAENPATLLRTEFVGPQVGRELALNGLYAAIFVVVGFLIYIGFRFEFKFAVSATLTTMFD 179 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + G+FA G++F+LT +A +L ++G+S+ND +VV+DR+R+N + ++ ++ Sbjct: 180 VLVVAGYFAWSGLDFDLTVLAGLLAVMGFSINDTIVVFDRVRENFRTL--RAEPNEIFNR 237 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 SIN+TL R++ TS+ F+SVL + ++GG + A+ G VV SSIF+A P+L Sbjct: 238 SINQTLSRTIITSVVFFLSVLALYLYGGGSLEGLALSQMIGAVVGTLSSIFLACPLLTL 296 >gi|262371897|ref|ZP_06065176.1| acridine efflux pump AdeY [Acinetobacter junii SH205] gi|262311922|gb|EEY93007.1| acridine efflux pump AdeY [Acinetobacter junii SH205] Length = 1057 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 62/529 (11%), Positives = 149/529 (28%), Gaps = 41/529 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LTKMPVAQYPTIAPPT-------------VTISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAQTVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASINLNFEQGIDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + A + + + + Sbjct: 110 KLQSATALLPEDVQRQGVRVTKSGASFMQVVAFYSPDGSLPASDIKDYVNSNISEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N G Sbjct: 170 AGVGEVTVFG-GSYAMRIWLDPAKLTSFNLTPSDVAAAIRSQNAQVAVGQLGGAPAVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + + Sbjct: 229 VLNATVNAQSML-------------QTPEQFKNIFLKNAADGAQVRLSDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + LR + + Sbjct: 276 QFDSKFNGNPAGGVAIKLATGANALDTAAAVEKRLSELRVNYPSGLKDKLAYDTTPFIKL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + ++ + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEHLEPVPATEKSMGQISGALIGITSVLTAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 + FFGG R F+IT+ ++++S+ A++ A+ +++ Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMILSLIVALTFTPALCATLLKQHDPNK 504 Score = 82.0 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 85/249 (34%), Gaps = 8/249 (3%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V LS V + + +++ +E ++ P Sbjct: 259 QVRLSDVARVELGSDNYQFDSKFNGNPAGGVAIKLATGANALDTAAAVEKRLSELRVNYP 318 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706 + I + +I + + + I +++ + W + + + + Sbjct: 319 SGLKDKLAYDTTPFIKLSIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLG 378 Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 T +FG N + A++ IG V+D +VV + + + + +KS+ Sbjct: 379 TFAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEHLEPVPATEKSMG 436 Query: 767 ETLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G + TS+ +PMA +GG VI F+I + ++++ ++ + Sbjct: 437 QISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMILSLIVALTFTPALCAT 495 Query: 823 IYDWRAKNA 831 + N Sbjct: 496 LLKQHDPNK 504 Score = 63.9 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 70/221 (31%), Gaps = 18/221 (8%) Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682 GD++ + + + + + I+ ++I + + Sbjct: 837 VSSGDAMLAMEEIIGKLPSMGLQGFDYEWTGLSLEERDSGNQTVPLLILSLLIVFLCLS- 895 Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGI--------EFNLTAVAAVLTLIGYSV 734 + W + + + L I G+ FN+ A++ +IG S Sbjct: 896 --ALYESWAIPISVLLVVPLGIIGAF-TMTWLGMVIKGDPNLSFNIYFQVAIVAVIGLSA 952 Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791 + +++ + ++ L + + L + T++A VLP+A+ G Sbjct: 953 KNAILIVEFAKE---LQEKGEELFEATLHAAKMRLRPIIMTTLAFGFGVLPLALASGAGA 1009 Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 S + G++ + IF ++I + Sbjct: 1010 GSQHSVGYGVLGGVISSTLLGIFFIPVFFVWIRSIFKYKPK 1050 >gi|254713125|ref|ZP_05174936.1| Acriflavin resistance protein [Brucella ceti M644/93/1] gi|254716522|ref|ZP_05178333.1| Acriflavin resistance protein [Brucella ceti M13/05/1] gi|261218316|ref|ZP_05932597.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti M13/05/1] gi|261320836|ref|ZP_05960033.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti M644/93/1] gi|260923405|gb|EEX89973.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti M13/05/1] gi|261293526|gb|EEX97022.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti M644/93/1] Length = 1051 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E++ I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+A + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032 Score = 49.3 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 62/538 (11%), Positives = 139/538 (25%), Gaps = 57/538 (10%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114 + L S+ +R + + ++ + + D + + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR---- 170 + + +N K +++ I + + + + +E + Q Sbjct: 641 ARNLPRTIMG-MNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLT 699 Query: 171 -IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 E R + Q + D + + + + Sbjct: 700 TEAAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG-------- 751 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 V D + + + + + F + + Sbjct: 752 ----------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDALV 801 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 K + A + + + I+ +AA + I Sbjct: 802 TVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGSAY 861 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSL 407 + V G+ A++ GL+++ L + Y L ++ + L L Sbjct: 862 QEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLATDL 915 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 G T + G+V IGLA + IL+ E E +S + + I ++ Sbjct: 916 RGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVMTS 975 Query: 468 ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 + ++ V L G + + +L + F A + I R K Sbjct: 976 LAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033 >gi|17987912|ref|NP_540546.1| multidrug resistance protein MEXB [Brucella melitensis bv. 1 str. 16M] gi|260563381|ref|ZP_05833867.1| acriflavin resistance protein [Brucella melitensis bv. 1 str. 16M] gi|17983648|gb|AAL52810.1| acriflavin resistance plasma membrane protein [Brucella melitensis bv. 1 str. 16M] gi|260153397|gb|EEW88489.1| acriflavin resistance protein [Brucella melitensis bv. 1 str. 16M] Length = 1051 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 71/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P RL Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDRLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVNSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E++ I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 71.3 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG +V + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAVKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+ + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLTFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032 Score = 50.5 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 64/540 (11%), Positives = 141/540 (26%), Gaps = 61/540 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPYVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGLAV + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLAVKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++T ++ V L G + + +L + F A + I R K Sbjct: 974 TSLTFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033 >gi|330863125|emb|CBX73255.1| acriflavine resistance protein B [Yersinia enterocolitica W22703] Length = 682 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 74/684 (10%), Positives = 180/684 (26%), Gaps = 51/684 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIIIMLAGSLAIM-----KLPVAQYPTIAPPA-------------ISISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q + + + S ++TL+F + +V Sbjct: 50 PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I + Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMKQEDIADYVGSNVKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + + NN G Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNYGLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + + Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQIMLKVNTDGSQVRLKDVAIVQLGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 NIIARFNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFG G R F+IT+ ++++S+ A+ + A+ + + Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + D + + V + + L + +G V Sbjct: 516 NRMFEKSTHHYTDSVGNILRSTGRYLVIYLAIVIGMGVLFLRLPTSFLPEEDQGVFLTMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L+ + + + F V G +K Sbjct: 576 QMPAGATQERTQKVLDQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIR 667 + Q V +SR+L Sbjct: 636 RPGEQTKFQRLLAVLLLLSRKLKT 659 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + +I + + +++ + ++ K+ Sbjct: 258 SQVRLKDVAIVQLGAENYNIIARFNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + I + + +++ + + L + + + Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA +GG+ F+I + +V++ ++ + + Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492 >gi|269963504|ref|ZP_06177829.1| protein export protein SecD [Vibrio harveyi 1DA3] gi|269831679|gb|EEZ85813.1| protein export protein SecD [Vibrio harveyi 1DA3] Length = 612 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 148/513 (28%), Positives = 270/513 (52%), Gaps = 27/513 (5%) Query: 25 NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84 F S+ + + M + I LGLDLRGG +L VD + DE+++ L+++ Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALVDEIKASLRED 172 Query: 85 GIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143 + +R N I ++ + + + + +T++++ Sbjct: 173 RVRGVQVRAEAHNHIAVNSENEAGLKAASQFIRQNY------------PGWTMTSSDRGF 220 Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203 + S+ NI + + ++Q+++I+R RI+++GI+E+ +QR G I I+LPG QDP++ + Sbjct: 221 ELQPSEQNIQEFQTTTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 280 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 ++G TA ++F++V + + L+D+DG ++ + ++G H+ A A D Sbjct: 281 NVIGATASLAFYEVKD--AGQARSSQDLVLKDNDGRTVILTKRPVLTGEHIVNARAGVDK 338 Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312 V G + V R+ + + + Q+ Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTDERGMTERSERVISVATIQSQ 398 Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372 + +I+G +++ A LA +LRAGSL + IVEER +GA LG+++I G A+ G+ Sbjct: 399 LGSQFRITGAGSMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGM 458 Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431 L + FM + Y + G VA+ ++ N++ L L++LL A LTLP IAG+VL +G+AVD+N Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +++ ERI+++ R+ +S ++D+GF A++TI D+NIT +I V+L+ G G ++GFA+T Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGFALT 578 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +GL ++ SMFT + RAM+ I + + Sbjct: 579 LGLGLMTSMFTGVFASRAMINLIWGRDGRRDVR 611 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + TI +G + E I+ G + + L ++ + + Sbjct: 410 SMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWY 469 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L ++ LG AL G L +A ++ +G +V+ V++++R++ Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 M+ SF ID + + ++ I+ + + G I FA+ + G++ Sbjct: 529 MRE---GRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGFALTLGLGLMT 585 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + + +F + ++ I+ + Sbjct: 586 SMFTGVFASRAMINLIWGRDGRR 608 >gi|90021055|ref|YP_526882.1| protein translocase subunit secF [Saccharophagus degradans 2-40] gi|89950655|gb|ABD80670.1| protein translocase subunit secF [Saccharophagus degradans 2-40] Length = 317 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 165/296 (55%), Gaps = 8/296 (2%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 + FM R SIL + SI L GLN+G+DF GG QL DL+ +R+ LE Sbjct: 7 LNFMGQRKLAAVFSILLLVGSIVSLTVQGLNFGLDFTGGTQLEYKYETAADLNAIRATLE 66 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM-------VKKKITEIVPLSTIQ 652 N+ + N L+ LQ S ++ E+ ++ ++ + Sbjct: 67 EAGYTGAVVVNYGSDTNVLMSLQQSVPPSADPSKPQEIVSIGEVVLELLESKSSEEIELL 126 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 T++VG ++ EL G +G++++ ++ Y+ +RF++ F++GA+ LI D+ LG F+ Sbjct: 127 RTDVVGAQVGEELANSGGMGMLLALAVVMAYVAVRFQFKFSVGAVAALIHDVIIVLGVFS 186 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 F + F+LT +AAVL +IGYS+ND +VV DR+R+N +L S ++I+ S+ +TLGR+ Sbjct: 187 FFQLTFDLTVLAAVLAVIGYSLNDTIVVADRIRENFRLIRKGDS-EEVINISLTQTLGRT 245 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + TS+ + +L + GG +I +FA+ + G+V+ SSI+++A IL+ ++ R Sbjct: 246 MITSLTTLLVLLALFFVGGEMIHNFALALIVGVVIGTYSSIYVSANILMAMHIDRE 301 >gi|256044021|ref|ZP_05446932.1| multidrug resistance protein MEXB [Brucella melitensis bv. 1 str. Rev.1] gi|265990431|ref|ZP_06102988.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis bv. 1 str. Rev.1] gi|263001215|gb|EEZ13790.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis bv. 1 str. Rev.1] Length = 1051 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 71/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P RL Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDRLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E++ I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 71.3 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG +V + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAVKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+ + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLTFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032 Score = 50.5 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 64/540 (11%), Positives = 141/540 (26%), Gaps = 61/540 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPYVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGLAV + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLAVKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++T ++ V L G + + +L + F A + I R K Sbjct: 974 TSLTFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033 >gi|91778868|ref|YP_554076.1| RND family hydrophobe/amphiphile efflux pump [Burkholderia xenovorans LB400] gi|91691528|gb|ABE34726.1| hydrophobe/amphiphile efflux pump, RND family [Burkholderia xenovorans LB400] Length = 1076 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 69/680 (10%), Positives = 172/680 (25%), Gaps = 40/680 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L + ++P P + + Sbjct: 10 RPIFASVISIVIALGGVLAMF-----ALPVAQYPDITPP-------------QITITASY 51 Query: 63 DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 + + + + + S I + F + + V Sbjct: 52 PGASADVVANNVAAPIEQQVNGADNMIYMTSSSSSTGSLTINVFFRNGTNPDLAQVDVQN 111 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + +L + + + +++ + + +D + Sbjct: 112 RVNLALPQLPQSVQSQGVQVQKKSSAFMMVVAVYSPDNRFDSTYVANYANVYVLDALKRI 171 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 Q + P R+ QL T + N G Sbjct: 172 PGANQASIFGTPDYAMRIWLRPDRMAQLGITATDVQNAVANQNQQFAVGRLGQAPTGSPV 231 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + V +S + I GA Sbjct: 232 EQSFAVTTSGRLSNPAEFDN------------IIIRAAGNGAAIVRLKDIGRAELGQKDY 279 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + A ++ + Sbjct: 280 SIRSRFQGKPATVIAIYQQPGANALDVSKQVRATLADMKRSFPEGIDYNIAMDTTDFTRA 339 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV+IV+FM + + L+ ++ ++++ T ++ LG ++ + ++ Sbjct: 340 SIADVVKTFFEAVLLVVIVVFMFLQSLRATLIPVLAVPVSILGTFMGMAALGFSINMLTM 399 Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473 G+VL IG+ VD I+V E + R S + TI + Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMREFGLSPNAAAKRAMDEVSGPVVTIVLVMCAVFVP 459 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 L G + FAIT+ +S+++S A+++ A+ +++ + Sbjct: 460 VAFLGGITGQMYKQFAITIAISVVLSGIVALTLSPALAAVLLKPQAHAKHRFFQWFDNAF 519 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 L + LL + + + Sbjct: 520 ARVTAGYGRAVTLTIRRFGIALLLFAGMVLLAVTMMRSIPHAFLPPEDQ-GYLLGAIIMP 578 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 ++L+ + G++ + + G S+ + + + + Sbjct: 579 DSASLDRTGRVSSRVTEYFGKQAGVGSITVVDGYSLLDNQTMNNAATFFVGLKGFDERYS 638 Query: 654 TEIVGPKISRELIRKGIVGV 673 + + + L+ + Sbjct: 639 WANIRTQNAHALLLGAYRAL 658 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 82/201 (40%), Gaps = 8/201 (3%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 S L +K+ E + + +T ++++ V++ I + +++ Sbjct: 307 SKQVRATLADMKRSFPEGIDYNIAMDTTDFTRASIADVVKTFFEAVLLVVIVVFMFLQ-- 364 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 L + + + I T A G N+ + ++ IG V+D +VV + + +N Sbjct: 365 -SLRATLIPVLAVPVSILGTFMGMAALGFSINMLTMFGMVLAIGIVVDDAIVVIENVERN 423 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804 M+ + +S ++++E G V + +P+A G G + FAI +A Sbjct: 424 MREF--GLSPNAAAKRAMDEVSGPVVTIVLVMCAVFVPVAFLGGITGQMYKQFAITIAIS 481 Query: 805 IVVAASSSIFIAAPILLFIYD 825 +V++ ++ ++ + + Sbjct: 482 VVLSGIVALTLSPALAAVLLK 502 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 61/165 (36%), Gaps = 7/165 (4%) Query: 671 VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 + + + + + + ++ +W +G + + + L L G+ ++ + L Sbjct: 877 LVFVFGLVMVFLILAAQYERWSLPVGVLMAVPFALFGALLAILLRGLNNDVYFQIGLTML 936 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 + + + +++++ + S D + + L V TS A + +P+A+ Sbjct: 937 VALAAKNAILIFEFA---VLNRAQGASPFDAALTAARDRLRPIVMTSFAFILGCVPLAIA 993 Query: 790 GGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G+ S + G++ A ++F + + A Sbjct: 994 TGASQNSRHSIGTGVIGGMLGATGVAVFFIPMFFFLLESANERRA 1038 >gi|300693757|ref|YP_003749730.1| component of acridine efflux pump, multidrug efflux system [Ralstonia solanacearum PSI07] gi|299075794|emb|CBJ35100.2| component of acridine efflux pump, multidrug efflux system [Ralstonia solanacearum PSI07] Length = 1050 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 84/684 (12%), Positives = 178/684 (26%), Gaps = 39/684 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L + ++PS P Sbjct: 8 RPIFAWVLAIIVMLAGALSIA-----TLPIAQYPSIAPPAI---------AITATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ L + ITL+F + + +V L Sbjct: 54 AKTLEDTVTQIIEQKMKGLDHLSYMASTSESSGTVTITLTFENGTDPDTAQVQVQNKLAL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + + + + S + D I E Sbjct: 114 ATPLLPQEVQQQGVQVTKSATNFLNVLAFTSEDGSMTGSDLSDYVAANVQDAISRVEGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G D+ Sbjct: 174 DTTLFGSQ-YAMRIWLDPNKLSNFSLTPLDVKTAIQAQNAQVSAGQLGGMPAVDNQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + R I Sbjct: 233 TITSQTRL-------------KTAEAFGNILLRTQTDGSRVRLRDVARIELGSESYSTVG 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T++ A L P S Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFLPPGMKVQKPYDTTPFVRISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T A LV +V+++ + + L+ ++ + ++ T +L+ G T+ ++ +V Sbjct: 340 VVRTLAEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPREATRKSMGQITGALVGVALVLAAVFVPMAFF 459 Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G R F+IT+ ++ +S+ A+ + A+ + +K + Sbjct: 460 KGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCATL-----LKPVKKGHAQATTGFFGW 514 Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 F R GI + +G+ + G ++L V D + Sbjct: 515 FNRTFDRGNHRYQGIVRHMLNKGRRYMIVYGVLLALVVAGFMKLPVGFLPDEDQGTLF-V 573 Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657 L L G + + D + D+V+ + + Sbjct: 574 LAQLPPGATNARTEDVIRQVEHHFLVDQKDAVSGVFSVAGFSFAGSGQNMGFAFVKLRPW 633 Query: 658 GPKISRELIRKGIVGVIISAIAML 681 + L G+V + A + Sbjct: 634 NERKGEALSVNGVVAKAFAFFATI 657 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 34/247 (13%), Positives = 86/247 (34%), Gaps = 6/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + L +++ + ++ ++ + Sbjct: 258 SRVRLRDVARIELGSESYSTVGRYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFL 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P R I + + + + + + + +++ + + L + + + Sbjct: 318 PPGMKVQKPYDTTPFVRISIEEVVRTLAEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + A++ IG V+D +VV + + + + R+ KS+ Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPREATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA + GS F+I + + ++ ++ + + Sbjct: 436 GQITGALVGVALVLAAVFVPMAFFKGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCAT 495 Query: 823 IYDWRAK 829 + K Sbjct: 496 LLKPVKK 502 Score = 57.4 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 69/233 (29%), Gaps = 6/233 (2%) Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 + + S + V + A + + + +P + Sbjct: 800 TAFAKVDWASGSPRLERYNGVPSVEILGMAKPGSASSGEALAIVEDAVAKLPPGIGYSWT 859 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 + + + ++ + I L + W I + L + L L Sbjct: 860 GLSLQEKASSGQTTLLYTLSILIVFLCLAALYESWAIPFSVIMVVPLGVLGALVGAILTW 919 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 ++ +LT IG + + +++ + + L+ + + L + T Sbjct: 920 KMNDVYFQVGLLTTIGLASKNAILIVEFAKD---LHAQGKRLAEAAMTAARMRLRPILMT 976 Query: 776 SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 S+A + VLPM G + + G++ +IF + + Sbjct: 977 SLAFILGVLPMVTGSGAGAGAQHALGTAVIGGMLSGTLLAIFFVPLFFVLVRG 1029 >gi|91790473|ref|YP_551425.1| preprotein translocase subunit SecF [Polaromonas sp. JS666] gi|91699698|gb|ABE46527.1| protein translocase subunit secF [Polaromonas sp. JS666] Length = 317 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I FMR IS ++ LF+ GL+ ++F GG + V + D Sbjct: 1 MEFFKIRRDIPFMRHALIFNVISFATFALAVFFLFSRGLHLSVEFTGGTLMEVNYAQAAD 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R+ + L + D+ QNF ++ ++RL Q G S AQ E V + T Sbjct: 61 VGKIRATVAGLGLTDVQVQNFGTSRDVMIRLPAQKGVSTAQQS--EKVLVALKAASSDVT 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ TE VGP++ EL G+ + + +++Y+ RF+W +A+ AI + D+ LGF Sbjct: 119 LRRTEFVGPQVGEELAHDGLKALAMVVFGIMVYLAFRFEWKYAVAAIIANLHDVVIILGF 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FA F EF+L +AAVL ++GYSVN+ VV++DR+R+N + Y ++ +ID +I T+ Sbjct: 179 FAFFQWEFSLAVLAAVLAVLGYSVNESVVIFDRIRENFRRYRK-MNTVQIIDNAITSTIS 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 R++ T + I VL M ++GG + FA+ + GI+ SS+F+AA I +++ R Sbjct: 238 RTIITHGSTQIMVLSMLLFGGPTLFYFALALTIGILFGIYSSVFVAAAIAMWLGIRREDL 297 Query: 831 AR 832 + Sbjct: 298 VK 299 >gi|315636238|ref|ZP_07891490.1| RND efflux system, inner membrane protein CmeB [Arcobacter butzleri JV22] gi|315479447|gb|EFU70128.1| RND efflux system, inner membrane protein CmeB [Arcobacter butzleri JV22] Length = 1042 Score = 194 bits (493), Expect = 5e-47, Method: Composition-based stats. Identities = 75/675 (11%), Positives = 191/675 (28%), Gaps = 42/675 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 +N + +L +I G + ++++P +P +++ Sbjct: 8 KNPVFAGVLSIIIFLTGTIAMF-----NLPIEQYPRVLPP-------------QIIVSTS 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 + L + + + + I + F ++ V Sbjct: 50 YPGASADTIAKTVAAPLEEQINGAKNMLYMNSLAEDSGRLSINVFFEVGTNPDDAKIDVN 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 +Q +K+ ++ +V ++ + +I S + ++ + Sbjct: 110 NRVQAALAKMPEQVQRQGVVVGERSPSILMFAMLQSPNKTFDSIYLSNYALLNLVESLKR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + + DP +L + T + NN + Sbjct: 170 VKGVGDAMIFGAKDYSIRIWMDPLKLSKYSLATTDVITAIKEQNNQYAAGKIASEPIAQK 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Y + + + + + Sbjct: 230 QMYTYTIRTPQR-------------FENPEQFGNIVIRSNEDGSSLRLKDIATVELGASD 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 L ++ + T + + + Sbjct: 277 YSVTTRLNNAPSIPIGVFLQSGANSLETADAIKKALEDASKSFPEDMTYSIPYDSTDFIT 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV++++F+ + + ++ ++ ++++ A + LG ++ L + Sbjct: 337 ASIHEVVKTFVEALALVILIIFLFLQSWRATIIPFIAVPVSIVGAFAGMYALGFSINLLT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 + G+VL IG+ VD I+V E I + ++ + + + + + Sbjct: 397 LFGLVLAIGIVVDDAIIVIENIERHMEEGKTPKEAAFIAMKEVTGALIAIILVLGAVFIP 456 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFF 532 + F G G R FAIT+ +S++IS F A+++ A+ + + K + F Sbjct: 457 VAFMGGLSGEMYRQFAITIVISVVISGFVALTLTPALCVKVLKNKKHEPKGFFKWFNDSF 516 Query: 533 LIPDCIAIQFMRARFWGVGISILFSIC--SICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 ++ IS+L I + G+ + Sbjct: 517 AKATQGYSIIVKKSIRFSLISVLLYAGLLFISWDMFKSMKTGLLPDEDQGTIFVFGFNPP 576 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +LE + + N + Y S ++ + + K + Sbjct: 577 GYSMSKSLELSEEINKIIAEDPSVNNIITLAGYDFTTSAQRSHTVATIIKLKDWSKRPNP 636 Query: 651 IQNTEIVGPKISREL 665 Q + + K S++L Sbjct: 637 EQEAQALLAKFSKQL 651 Score = 85.9 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 28/289 (9%), Positives = 85/289 (29%), Gaps = 10/289 (3%) Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610 S + + + + + + +N ++ Sbjct: 221 IASEPIAQKQMYTYTIRTPQRFENPEQFGNIVIRSNEDGSSLRLKDIATVELGASDYSVT 280 Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG- 669 + + + +KK + + T + + + Sbjct: 281 TRLNNAPSIPIGVFLQSGANSLETADAIKKALEDASKSFPEDMTYSIPYDSTDFITASIH 340 Query: 670 --IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 + + + +++ I++ W + + + I G NL + + Sbjct: 341 EVVKTFVEALALVILIIFLFLQSWRATIIPFIAVPVSIVGAFAGMYALGFSINLLTLFGL 400 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISV 783 + IG V+D ++V + + + + ++ ++ E L + A FI V Sbjct: 401 VLAIGIVVDDAIIVIENI---ERHMEEGKTPKEAAFIAMKEVTGALIAIILVLGAVFIPV 457 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 M G + FAI + +V++ ++ + + + + + + Sbjct: 458 AFMGGLSGEMYRQFAITIVISVVISGFVALTLTPALCVKVLKNKKHEPK 506 Score = 60.9 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 62/175 (35%), Gaps = 7/175 (4%) Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFAL 713 +++ I + + + + + +W L + + I + + Sbjct: 855 WTGTAYQEKQIGGSSAQAFIFGIVFLFLILCALYERWLLPLSVVLAVPFAIFGAILATNI 914 Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773 ++ N+ +L L G + + +++ + ++ I D ++ L + Sbjct: 915 RSLDNNIYFQIGLLVLAGLAAKNAILIVEFA---IQKQKEGIKLVDAALEAAKVRLRPII 971 Query: 774 YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 TS+A + V+P+A+ G + S + G++ A +I + I Sbjct: 972 MTSLAFTVGVMPLAISSGAGAASKHSIGTGVVGGMLTATFIAILFIPLFFVLISR 1026 >gi|215427987|ref|ZP_03425906.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis T92] Length = 529 Score = 194 bits (493), Expect = 5e-47, Method: Composition-based stats. Identities = 67/296 (22%), Positives = 133/296 (44%), Gaps = 11/296 (3%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 R G+S +I + G +GIDFKGG + V +L Sbjct: 62 GRRRLWFGVSGAIVAVAIASIVFRGFTFGIDFKGGTTVSFPRGSTQVAQVEDVYYRALGS 121 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659 S + V+++ + S ++ + + + P + V Sbjct: 122 EPQSVVIVGAGASATVQIRSETLTSDQTAKLRDALFEAFGPKGTDGQPSKQAISDSAVSE 181 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ +K ++ +++ + + +YI +R++ Y + AIT ++ D+T T G ++L G E Sbjct: 182 TWGGQITKKAVIALVVFLVLVALYITVRYERYMTISAITAMLFDLTVTAGVYSLVGFEVT 241 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777 V +LT++G+S+ D V+V+D++ +N +TT +F + + +IN+T RS+ TS+ Sbjct: 242 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTFMRSINTSL 301 Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + VL + + G + A+ GI++ SSIF A P+L+ + + Sbjct: 302 IGVLPVLALMVVAVWLLGVGTLKDLALVQLIGIIIGTYSSIFFATPLLVTLRERTE 357 >gi|288800552|ref|ZP_06406010.1| multidrug efflux RND transporter MexF [Prevotella sp. oral taxon 299 str. F0039] gi|288332765|gb|EFC71245.1| multidrug efflux RND transporter MexF [Prevotella sp. oral taxon 299 str. F0039] Length = 1062 Score = 194 bits (493), Expect = 5e-47, Method: Composition-based stats. Identities = 68/535 (12%), Positives = 156/535 (29%), Gaps = 40/535 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +++ +I IG+L + +FPS P ++V D Sbjct: 7 RRPVLAIVVSLVIVFIGILSLF-----NLPITQFPSISPPK-----------VNVV--AD 48 Query: 62 EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 N + + L L G+ + +I + F A V Sbjct: 49 YPGANNELMIKSVLIPLEQALNGVPGMKYIESDAGNDGEGEINIVFKLGTDPNVDAINVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + +KL + + + E+ ++ D ++ Sbjct: 109 NRVSAATNKLPPAVVREGVKISREEPNILMYINLYSDDPKVDQNFLFNYADINISPELAR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + P +L + ++ + G + + Sbjct: 169 VDGVGDLDILGTRSFAMRVWLKPDKLTAYGLSATDITDALQQQSIEASPGKLGESSGKHA 228 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 +Y+++ + + + + ++ V Sbjct: 229 QSFEYVLKYPGRYT-------------TPEEYSNIVVKSTPDGQFIRLKDVADVSLGSEV 275 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 L + I+ A L+ + Sbjct: 276 YDIYSTLNNHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDMPKGMHYELSYDISRFLD 335 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV V+F+ + + L+ ++ +++I + A+++ G TL + S Sbjct: 336 ASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLIGSFAVMNAFGITLNMIS 395 Query: 417 IAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 + +V+ IG+ VD I+V E + + ++ + I + + Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVKIAKEGLEPLEATQKAMKEISGAIVAVTLVMASVFI 455 Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 + F G G R F+IT+ I++S FTA+++ ++ I+ ++ I Sbjct: 456 PVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCALILTRERDNHIKKTW 510 Score = 95.5 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 9/278 (3%) Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619 + + V + ++ + ++ + Sbjct: 229 QSFEYVLKYPGRYTTPEEYSNIVVKSTPDGQFIRLKDVADVSLGSEVYDIYSTLNNHPSA 288 Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIIS 676 + + +V++ VKK + + + ISR L I K I + + Sbjct: 289 AITLKQAYGSNARQVIQNVKKTMAHLQKDMPKGMHYELSYDISRFLDASIEKVIHTLFEA 348 Query: 677 AIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735 I + + W AL + + + + FGI N+ ++ A++ IG V+ Sbjct: 349 FILVGFVVFLFLGDWRSALIPCLAVPVSLIGSFAVMNAFGITLNMISLFALVMAIGIVVD 408 Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792 D +VV + + N+K+ + + K++ E G V ++ +P+A GG Sbjct: 409 DAIVVIEAV--NVKIAKEGLEPLEATQKAMKEISGAIVAVTLVMASVFIPVAFMGGPEGM 466 Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 F+I +A GIV++ +++ + + I N Sbjct: 467 FYRQFSITIASGIVLSGFTALTLTPSLCALILTRERDN 504 Score = 52.4 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 10/245 (4%) Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 V + + + + + S A K I E+ Sbjct: 789 NVKNNQGEMVPYADFLHMEKVYGMSEMTRHNLYNSAEVTGSAAAGYSSGQAIKAIEEVAT 848 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRFK---WYFALGAITTLILD 703 + + I+++ + +G +II + IY+ + + + L IT L Sbjct: 849 STLPHGYDYDFAGITKDEVDQGNQALIIFIVCLTFIYLILSAQYENFLLPLPIITCLPAG 908 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 I T F L G+E N+ A A++ LIG + V++ + ++ + S R + Sbjct: 909 ICGTFIFLKLTGLENNIYAQVAMVMLIGLLGKNAVLMVE---YAVQRHNLGRSIRAAAIE 965 Query: 764 SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820 + TS A +LP+ G I + A G++ + + + Sbjct: 966 GAAARFRPILMTSFAFIAGLLPLVFAHGAGAIGNRTIGTAAAGGMLFGTCFGLILVPGLY 1025 Query: 821 LFIYD 825 Sbjct: 1026 YIFGR 1030 >gi|167622139|ref|YP_001672433.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella halifaxensis HAW-EB4] gi|167352161|gb|ABZ74774.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Shewanella halifaxensis HAW-EB4] Length = 1052 Score = 194 bits (493), Expect = 5e-47, Method: Composition-based stats. Identities = 74/687 (10%), Positives = 186/687 (27%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + ++PS P + + V Sbjct: 8 RPIFAWVIAIIVMLAGVLSIV-----GLPVSQYPSIAPPSVV---------ISAVYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + ++ + L + +ITL+F + +V LQ Sbjct: 54 AKTMEDSVTQVIEQRMTGLDNLRYISSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + + T ++++ + + + + D + Sbjct: 114 AMPLLPQEVQAQGVNVTKSSAGFLMVAAFVSEDGSLDKNDIADYVGSNIQDPLSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L Q T+ + N G Sbjct: 174 TIELFGAQ-YAMRIWLDPLKLTQFNLTSQDVISSIREQNAQVSAGQLGGAPSLPGQELNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + I + + F + Sbjct: 233 TVSAQSRL-------------QTAEQFQKIIIKADTSGAKVFLEDVARVELGAESYAVES 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T E A L+ + S Sbjct: 280 FYNGKPAAGIGIQLATGANALATAEGVRAKIAELKPFFPEGMEVVYPYDTTPFVEKSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +++++ + + L+ ++ + ++ T A+L++ G ++ ++ +V Sbjct: 340 VVYTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILAVAGFSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + +T V + F Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPIEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSIDINP 527 G R F+IT+ ++ +S+ AI + A+ +++ + Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVMVAIILTPALCATMLKPIAKGESHAKTGFFGWFNRKF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + +A R + + + + +G + + Sbjct: 520 DALTSRYEANVAAMIKRTGRTMMVYLAITVAVGWIFMRMPTAFLPDEDQGILFTQAILPV 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + LE + ++ ++ + + F V G +K P Sbjct: 580 NSTQQETKQVLEQVSDYFLNDESANVKSVFSVSGYSFAGMGQNMGLAFVGLKDWSERSNP 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +Q+ ++ + + Sbjct: 640 GQDVQSVANRAMAKFSQMKEAFVFAFV 666 Score = 74.7 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 81/240 (33%), Gaps = 6/240 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + V L V + + + +++A + ++ Sbjct: 255 TSGAKVFLEDVARVELGAESYAVESFYNGKPAAGIGIQLATGANALATAEGVRAKIAELK 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + ++ + + + + +++ + + L + + Sbjct: 315 PFFPEGMEVVYPYDTTPFVEKSIEGVVYTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T A+ G N + A++ IG V+D +VV + + + +S + Sbjct: 375 VLLGTFAILAVAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPIEATK 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+++ G V + +PMA GS F+I + + ++ +I + + Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVMVAIILTPAL 492 Score = 63.2 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 73/246 (29%), Gaps = 13/246 (5%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + V S S + N N Sbjct: 777 YRMQPEDLDSWYVRNSKGEMVPFSAFASGTWGYGSPRLERFNGLPAMNIQGGTAPGYSTG 836 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + MVKK + E ++ +S + + + + + Sbjct: 837 AAMDDIEAMVKKLPPGFGIEWNGLSYEERLSGNQAPMLY------ALSIVVVFLVLAALY 890 Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + W + + L I L G+ ++ +LT +G + + +++ + ++ Sbjct: 891 ESWSVPFAVVLVVPLGIIGALIAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEY 950 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 Y + ++ L + TS+A + V+P+A+ G + + G Sbjct: 951 ---YEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGG 1007 Query: 805 IVVAAS 810 ++ + Sbjct: 1008 MMSSTF 1013 >gi|71066131|ref|YP_264858.1| RND superfmily multidrug/dye/detergent efflux pump AcrB [Psychrobacter arcticus 273-4] gi|71039116|gb|AAZ19424.1| RND Superfmily multidrug/dye/detergent efflux pump AcrB [Psychrobacter arcticus 273-4] Length = 1075 Score = 194 bits (493), Expect = 5e-47, Method: Composition-based stats. Identities = 80/696 (11%), Positives = 192/696 (27%), Gaps = 51/696 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ IG++ L ++++P P + + Sbjct: 8 RPIFAWVLAVLVMLIGVISVL-----NLPIEQYPRIAPPT-------------ISVSASY 49 Query: 63 DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + +K + S +TL+F + + +V Sbjct: 50 PGANAQTVENSVIQIIEQRMKGLDGLMYMSSSSSSNGSASVTLTFENGTDSDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ S L ++ + +++ + + I +D I Sbjct: 110 KLQAAMSSLPESVQRQGVNVNKSSSSFMMVQAFISEDGNMDRSDIGDYINSNVLDAISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + + DPSRLR + + N G Sbjct: 170 EGVGEVQVFGS-TYAMRVWLDPSRLRSYNMVPSDVVNAIRAQNTQVSAGQLGQAPADTDQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 I+ ++ + + + + ++ Sbjct: 229 QV------------INATVTVQSYLQTPEEFQNILLKTDTAGAQVRLGDVADVEIGSENY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + S A + T E G+ A L ++V Sbjct: 277 SVVSLYNGQEAAGLGISLAAGANALETREAVGVRMAELEKNFPAGLTSVVPYDTTPFVRL 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + ++ T +L + G ++ + ++ Sbjct: 337 SIEQVVMTLIEAIVLVFIVMFLFLQNWRATIIPTLAVPVVLLGTFGVLYIAGFSINVLTM 396 Query: 418 AGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 +VL IGL VD I+V E + E + S+ + + + + Sbjct: 397 FAMVLSIGLLVDDAIVVVENVERILEEDPHISIKDATVQSMGEISKIVIGIALILSAVFI 456 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKS 522 + FFGG R F+IT+ S+++S A+ A+ + +++ + Sbjct: 457 PMAFFGGSTGVIYRQFSITLITSMVLSAMVALVFTPALCVTLLKRGKSHEKGNSENQKGF 516 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 S RF + + + +I I + + + + Sbjct: 517 FGWFNRSFTKTSQSYEKFIGKSFRFKWLYLIVYAAIIGIMAVVFLRIPGSFLPEEDQGIM 576 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + S + + L + + + V + + + Sbjct: 577 FTLVQLPAGSTLDETQDVLDKIRNYYDTQESDNIASVFTIAGFSFAGQGQNMGLAFVRLS 636 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + V + + + + + Sbjct: 637 DWEERSGDENTAQAVAGRAMGYFFTQLNEAQVFAIV 672 Score = 85.1 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 94/253 (37%), Gaps = 5/253 (1%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A V L V + + E L +++ + + ++ Sbjct: 256 TAGAQVRLGDVADVEIGSENYSVVSLYNGQEAAGLGISLAAGANALETREAVGVRMAELE 315 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 + P R I + ++ +I + + + I +++ + W + + + Sbjct: 316 KNFPAGLTSVVPYDTTPFVRLSIEQVVMTLIEAIVLVFIVMFLFLQNWRATIIPTLAVPV 375 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T G + G N+ + A++ IG V+D +VV + + + + IS +D Sbjct: 376 VLLGTFGVLYIAGFSINVLTMFAMVLSIGLLVDDAIVVVENV-ERILEEDPHISIKDATV 434 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 +S+ E + ++ +PMA +GGS F+I + +V++A ++ + Sbjct: 435 QSMGEISKIVIGIALILSAVFIPMAFFGGSTGVIYRQFSITLITSMVLSAMVALVFTPAL 494 Query: 820 LLFIYDWRAKNAR 832 + + + + Sbjct: 495 CVTLLKRGKSHEK 507 Score = 67.8 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 33/255 (12%), Positives = 84/255 (32%), Gaps = 11/255 (4%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 D G + N + S+ ++ N N A + Sbjct: 787 PDDIGKWYVRNDMNDMISFDAFSSSEWQSGSPRLTRYNSLPSMNIQGSAAPGLSTGEAMS 846 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692 + M+ K I T + E ++ + +++ + + + W Sbjct: 847 SMEAMIDKLPEGISYEWTGMSLEEQKSGAQAPILYA--LSILVVFLCLA---ALYESWSI 901 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 + + L + + F L G ++ +LT++G S + +++ + ++ Sbjct: 902 PFSVLLVIPLGVLGAVIFTWLRGFANDIYLQVGLLTVVGLSAKNAILIIEFAKE---RQE 958 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809 S + + + + L + TS+A + V+P+ + G + + G++ A Sbjct: 959 AGYSLTEAVMTAARQRLRPIIMTSLAFGLGVVPLFLANGPGSGSQNAIGTSVIGGVITAT 1018 Query: 810 SSSIFIAAPILLFIY 824 IF +++ Sbjct: 1019 LLGIFFIPMFYIWVR 1033 Score = 47.0 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 52/529 (9%), Positives = 142/529 (26%), Gaps = 35/529 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 ++ + + +I ++ + + P +L + L GS L D Sbjct: 537 KSFRFKWL--YLIVYAAIIGIMAVVFLRIPGSFLPEEDQGIMFTL-VQLPAGSTLDETQD 593 Query: 62 EDDFVNGFLQ-MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + + SD + S G Q + +D + + Sbjct: 594 VLDKIRNYYDTQESDNIASVFTIAGFSFAGQGQNMGLAFVRLSDWEERSGDENTAQAVAG 653 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI----GI 176 + + I+ + + + + ++ + + + + + + Sbjct: 654 RAMGYFFTQLNEAQVFAIVPPAITELGNASGFNLMLQDSGNLGHDGLLEARNMLLGMAAQ 713 Query: 177 SESTIQRLGSHRILIQLPGEQ-DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235 +E + + + + + + ++ Sbjct: 714 NEQVAGVRPNGQEDSPQLKIDINQEQAAAYGLSLSNINSVISTAW--------------- 758 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 D+ I +++ G ++ + D F + Sbjct: 759 GSSYVNDFVDRGRIKRVYVQGEASSRTNPDDIGKWYVRNDMNDMISFDAFSSSEWQSGSP 818 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 + L + I + G + ++E + + Sbjct: 819 RLTRYNSLPSMNIQGSAAPGLSTGEAMSSMEAMIDKLPEGISYEWTGM--------SLEE 870 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 S + A+ +V + L + I L V+ + L G + Sbjct: 871 QKSGAQAPILYALSILVVFLCLAALYESWSIPFSVLLVIPLGVLGAVIFTWLRGFANDIY 930 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 G++ +GL+ + IL+ E +E S+ ++ + I +++ + V Sbjct: 931 LQVGLLTVVGLSAKNAILIIEFAKERQEAGYSLTEAVMTAARQRLRPIIMTSLAFGLGVV 990 Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521 LF G G+ ++ ++ + I + I++ K Sbjct: 991 PLFLANGPGSGSQNAIGTSVIGGVITATLLGIFFIPMFYIWVRSAFPHK 1039 >gi|307297096|ref|ZP_07576911.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Sphingobium chlorophenolicum L-1] gi|306877484|gb|EFN08713.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Sphingobium chlorophenolicum L-1] Length = 1045 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 83/688 (12%), Positives = 191/688 (27%), Gaps = 49/688 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I GL L + ++P P + + + Sbjct: 9 RPIFAWVIAIGIMMAGLGAML-----SLPIAQYPDIAPP-------------SVNVSANY 50 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + L S Q +IT++F + +V Sbjct: 51 PGASAETVETSVTQVIEQQLTGIDGLMYFSSSSTANGQARITVTFKKGTDPDTAQVQVQN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S+L ++ L T + ++L + + + ++ D I Sbjct: 111 KVQQALSRLPNAVQQQGLTVTKSQTDFLMLVGLYDRTDTASQADIADYLVNNFQDSIARI 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L + + + N G + Sbjct: 171 DGVGSSQIFGSQ-YAMRVWLDPYKLATVKLMPSDVQSAIAAQNIEVSAGQIGADPAPEGQ 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + + Sbjct: 230 QINATVTAQARL-------------QTPEQFRNIVVKTQSDGSVVHLSDVARVELGNESY 276 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + T E L + Sbjct: 277 TSSAHLNRHPASGMAIQLAPGADALKTAELVKARVEALSTDLPHGYTVVYPRDTTPFIKL 336 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T GLV++V+F+ + + LV ++ + ++ T +L+L G ++ ++ Sbjct: 337 SVDEVVQTLIEAVGLVVVVMFLFLQSWRATLVPAIAVPVVLLGTFGVLALFGYSINTMTL 396 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + + Sbjct: 397 FGMVLSIGLLVDDAIVVVENVERLMEEEGLSPRDATIKSMEEIGNALIGIALVLSAVLLP 456 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDI 525 + FFGG R F+IT+ S+L+S+ A+ + A+ I + Sbjct: 457 MAFFGGSTGVIYRQFSITIVSSMLLSVLVALILSPALCATILKPVTREHRESGWHGKFNR 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + R F+ VG +++ + + + ++ +G + + V Sbjct: 517 WFERVTRGYMTRLNGFIGRRTFFWVGYAVILVLLWLLFVRLPTSFLPVEDQGQVMVQVTL 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 S + +ES+Q ++ + + F+ + G + + Sbjct: 577 PAGAKSSRTSAAVESIQNYFLNDEKDNVSFIFMAQGFSFAGQGENTAQGFISLSPWDERK 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673 ++ K + + Sbjct: 637 GMANSATMIANRATKQLAAIRDAKAQAL 664 Score = 80.9 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 80/196 (40%), Gaps = 8/196 (4%) Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 + +E + + + ++T E+++ I V + + M +++ Sbjct: 303 TAELVKARVEALSTDLPHGYTVVYPRDTTPFIKLSVDEVVQTLIEAVGLVVVVMFLFLQ- 361 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 W L + + + T G ALFG N + ++ IG V+D +VV + + Sbjct: 362 --SWRATLVPAIAVPVVLLGTFGVLALFGYSINTMTLFGMVLSIGLLVDDAIVVVENV-- 417 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803 + +S RD KS+ E + ++ +LPMA +GGS F+I + Sbjct: 418 ERLMEEEGLSPRDATIKSMEEIGNALIGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVS 477 Query: 804 GIVVAASSSIFIAAPI 819 ++++ ++ ++ + Sbjct: 478 SMLLSVLVALILSPAL 493 Score = 57.0 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 72/216 (33%), Gaps = 9/216 (4%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 Y+ A ++ ++ + +E + G ++ ++ Sbjct: 822 SYEIQGQAAPGASSGEAMDEMVKLQRQLPSGTSFAWSGLSYQEQLSGGQAPLLYGLSVLV 881 Query: 682 IYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738 +++ + W L + + L + + L G+E N+ +LT +G + + + Sbjct: 882 VFLCLAALYESWSIPLAVLLVIPLGLIGAVLAVTLRGLENNIYFQVGLLTTMGLAAKNAI 941 Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795 ++ + + + ++ + TS+A V+P+A+ G Sbjct: 942 LIVE--FAELA-HLEGKDAMSAALEAARLRFRPILMTSLAFIAGVIPLAIATGAGAQSRV 998 Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + G++ A +IF L I + Sbjct: 999 AIGTAVVGGMLTATVLAIFYVPLFFLTIMRIFNRKG 1034 >gi|145298425|ref|YP_001141266.1| AcrB protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851197|gb|ABO89518.1| AcrB protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 1047 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 71/685 (10%), Positives = 185/685 (27%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + ++PS P G Sbjct: 8 RPIFAWVIALVIMLAGSLAII-----GLPIAQYPSIAPPAV---------GISASYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L N +TL+F + +V LQ Sbjct: 54 AKTVEDSVTQIIEQNMTGLDHLLYMSSQSDSSGNVSVTLTFQAGTDPDIAQVQVQNKLQQ 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S L + ++ + ++++ + + + ++ + + + Sbjct: 114 AMSLLPQEVQQQGIRVQKTSSSFLMVAAFISGDGSMNNDDLADYVVANIKEPLSRLDGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 DP++L ++ T + N G +S Sbjct: 174 DITLFGSQYSM-RVWLDPNKLTRVQMTPIDVQNAIKAQNAQVAFGKVGGTPSVESQQFTA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + +S + + + + + Sbjct: 233 TIMGQTRLSTVE-------------EFNNILLRVNQDGSKVRLQDVARVELAGENYDADA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T E L A + S Sbjct: 280 LYNGQSTAAVAIKLATGANALDTAEKIRGKLDELSAYFPANMKVVYPYDTTPFVQISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV V+++ + + L+ ++ + ++ T ++S G ++ ++ G+V Sbjct: 340 VVQTLIEAIFLVFCVMYLFLQNFRATLIPTIAVPVVLLGTFGVMSAFGFSINTLTMFGLV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + ++ S + ++ + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERLMSEEDLSPLEATRKSMTQITGALVGIALVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F++T+ ++++S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCATLLKPIKHGEFGAQRGFFGWFNRAF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 S + + + + + ++ ++ + + +G I V Sbjct: 520 DSGANRYQSGVRKVIKQGARYSIIYVAMLAVLAVLFMRMPTSFLPEEDQGVIMSMVQLPV 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 L ++ + + + + V G +K P Sbjct: 580 GATKQRTEVVLADMRDYFLKNEKDNVDSVLTVAGFSFAGSGQNSGMAFIKLKDWKERSSP 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + + + Sbjct: 640 DRSANAIIGRAMGYLFSIKEAQVFA 664 Score = 79.0 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 85/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + D + +++ + +++ Sbjct: 258 SKVRLQDVARVELAGENYDADALYNGQSTAAVAIKLATGANALDTAEKIRGKLDELSAYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + + I + + +I + + +++ + + L + + + Sbjct: 318 PANMKVVYPYDTTPFVQISIEEVVQTLIEAIFLVFCVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G + FG N + ++ IG V+D +VV + + + +S + KS+ Sbjct: 378 GTFGVMSAFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ERLMSEEDLSPLEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA +GGS F++ + +V++ ++ + + Sbjct: 436 TQITGALVGIALVLSAVFVPMAFFGGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 70.1 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 83/252 (32%), Gaps = 11/252 (4%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + G + ++G + + PG S K Sbjct: 789 VRNSTGQMVPFSAFASTEWSFGSPRLERYNGVSAMEIVGEAAPGKSTGDAMAAIEQMVKQ 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + + +++ + + + W + + L Sbjct: 849 LPEGIGIEWTGLSLQERQAGSQAPALYAISLLVVFLCLA---ALYESWSIPFSVMLVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + + G+E ++ +LT IG S + +++ + ++ LY + + + Sbjct: 906 GVLGAILAATMRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKE---LYDKGMGLGEAVV 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A + VLP+ + G S + + G++ A +IF Sbjct: 963 EAAR--LRPILMTSLAFILGVLPLVISSGAGASSRNAIGTGVMGGMISATVLAIFFVPLF 1020 Query: 820 LLFIYDWRAKNA 831 + + K+ Sbjct: 1021 FVLVTRHFTKHN 1032 >gi|285018696|ref|YP_003376407.1| secd export membrane protein [Xanthomonas albilineans GPE PC73] gi|283473914|emb|CBA16415.1| probable secd export membrane protein [Xanthomonas albilineans] Length = 614 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 145/520 (27%), Positives = 252/520 (48%), Gaps = 39/520 (7%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++ P + K + LGLDL GG H L+VD+ + L ++++LR+ L+ I Sbjct: 103 NLASTVPGWLSKLGGKPMVLGLDLVGGVHFALQVDQKAALEKRLDAFAEDLRTTLRDNRI 162 Query: 87 GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145 S+ R+ N I + + + + L + + I++ Sbjct: 163 PYRSVERRPDNSIQANLGEGADASAARALLAK------------AQPTLSYAVSGQTIAV 210 Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 + + Q+ + AIEQ++ +R R++Q+G++E IQR G RI+++LPG QD + +++ Sbjct: 211 TVPDAELKQIAAGAIEQNLTTLRNRVNQLGVAEPIIQRQGEDRIVVELPGVQDTAEAKRM 270 Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259 +G TA + F V+ N++ G +G L+ +V +SG + A+ Sbjct: 271 IGATATLEFRGVVDGNAEDAVRSGNIPAEAKVYYRRDNGAPVLLNKRVLVSGDQMVNASV 330 Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302 + D V + G R F T + + + Sbjct: 331 SIDQNGLPAVAVTLNNVAGQRMFDYTSANTGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390 Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362 A GK + A LA +LRAGSL ++ VEE +G LG++++ Sbjct: 391 EALAPTRIAGVFGKNFQTTGLEKTEAENLAKLLRAGSLAAPMDFVEEYVIGPSLGAENVE 450 Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 +G A+V + ++F V Y +G + ++ +N+++ ++++SL GAT+TLP AG+ L Sbjct: 451 RGITAVVYAFLFTLVFFGVYYRMFGAITSVALLMNLLIVVSVMSLFGATMTLPGFAGLAL 510 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 +GL+VD+N+L+NERIREE R ++ G+ +A TI D+N+T LI V L+ FG Sbjct: 511 SVGLSVDANVLINERIREELRLGVPPKSAIASGYEKAGGTILDANLTGLIVGVALYAFGT 570 Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G ++GFA+TM + I SMFTAI++ RA+ + I +K Sbjct: 571 GPLKGFALTMIIGIFASMFTAITVSRALAVLIYGRRKKLK 610 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 101/280 (36%), Gaps = 4/280 (1%) Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613 + ++ + + G + V+ + + E + Sbjct: 337 LPAVAVTLNNVAGQRMFDYTSANTGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALAPT 396 Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 + +Q + + ++GP + E + +GI V Sbjct: 397 RIAGVFGKNFQTTGLEKTEAENLAKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGITAV 456 Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 + + + L++ + ++ F L++++ + +LFG L A + +G S Sbjct: 457 VYAFLFTLVFFGVYYRM-FGAITSVALLMNLLIVVSVMSLFGATMTLPGFAGLALSVGLS 515 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793 V+ V++ +R+R+ ++L + + I + G + ++ I + + +G Sbjct: 516 VDANVLINERIREELRL---GVPPKSAIASGYEKAGGTILDANLTGLIVGVALYAFGTGP 572 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 + FA+ M GI + ++I ++ + + IY R K + Sbjct: 573 LKGFALTMIIGIFASMFTAITVSRALAVLIYGRRKKLKSV 612 Score = 43.9 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 64/224 (28%), Gaps = 28/224 (12%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 + W +L ++ + L ALPN + + ++ RGG Sbjct: 2 LEFPRWKYVLILIVLGLSALYALPNVYQKDPSVQITAS------------RGG------- 42 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL- 119 DD + + + LK GI S+ + + + + + D + + Sbjct: 43 KLDDALRERV-------LADLKAAGITPKSVANEGDSLMVRLPTLQAQTRANDILREQVG 95 Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179 + LN+ ++ + ++ + ++Q + +R+D Sbjct: 96 ENYTVALNLASTVPGWLSKLGGKPMVLGLDLVGGVHFALQVDQ-KAALEKRLDAFAEDLR 154 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223 T R + + G A + + Sbjct: 155 TTLRDNRIPYRSVERRPDNSIQANLGEGADASAARALLAKAQPT 198 >gi|226954464|ref|ZP_03824928.1| preprotein translocase subunit SecF [Acinetobacter sp. ATCC 27244] gi|226834813|gb|EEH67196.1| preprotein translocase subunit SecF [Acinetobacter sp. ATCC 27244] Length = 322 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 96/309 (31%), Positives = 155/309 (50%), Gaps = 3/309 (0%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 M + ++ D I FM+ ISIL +I SI + T GLN G+DF GG+ Sbjct: 1 MSDLTQRDSKQYGRPDDLKIIPFMKIAKPAAIISILLTIASIFFIATKGLNLGLDFTGGV 60 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + PV S V L D Q + +VR+ Q D + + + + Sbjct: 61 SAELNYQNPVQPSQVTQALNQAGFKDAVVQTLGSTTDLIVRMPVQ--DDLVVEDLSQSIT 118 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 + + + + + VG + EL + V ++ I MLIY+ IRF++ A+GA+ + Sbjct: 119 QAVQLPNNMVNVHKVDAVGGAVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVMS 178 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L DI +G FALF F+LT +AA+L +IG+S+ND +VV DR+R+N + + S ++ Sbjct: 179 LFHDIVIIIGAFALFQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRDTSS-QE 237 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 +ID ++ ETL R+++TS + V+ M + GG + F+ M G+ V SSI+I Sbjct: 238 IIDIALTETLRRTIHTSATLLLVVVAMFILGGDGLHWFSAAMIVGVFVGTYSSIYIGTAY 297 Query: 820 LLFIYDWRA 828 L+ R Sbjct: 298 ALWRGLSRQ 306 >gi|304395526|ref|ZP_07377409.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea sp. aB] gi|304356820|gb|EFM21184.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea sp. aB] Length = 1051 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 66/574 (11%), Positives = 156/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I +G L L + ++++P+ P + ++ Sbjct: 8 RPIFAWVLAIIIMLVGALSIL-----KLPIEQYPNVAPPA-------------IEIQATY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L + + + + S +T+SF + +V Sbjct: 50 PGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSDSSGTLTLTISFESGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ D + S I D I + Sbjct: 110 KLQLATPLLPQEVQQQGIQVKKSSSSFLMVAGFISDDDNMTQNDISDFISSSIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L T + N G Sbjct: 170 KGVGDTQVFGAQ-YAMRIWMDPHKLNNYNLTPVDVISALNTQNTQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTSTD-------------EFGKILLKVNEDGSQVRLRDVARIELGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A L+ + Sbjct: 276 EIVARYNGKPASGIGIKLATGANALDTANAVKEELAKLQPTFPAGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+++ G ++ ++ Sbjct: 336 SIFEVVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVINAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLAAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A + A+ +K I + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVAFILTPALCAT-----MLKPIKKGDHGKTTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F ++ V + + + Sbjct: 511 FFGWFNRIFDKSTSHYVDGVGHMVRSTGRYMLIY 544 Score = 75.1 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 84/244 (34%), Gaps = 8/244 (3%) Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 V R L + ++ N ++L V E + K + Sbjct: 264 DVARIELGAENYEIVARYNGKPASGIGIKLATGANALDTANAVKEELAKLQPTFPAGLKV 323 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 P + + + +I + + + + +++ + + L + + + T Sbjct: 324 VYPYDTTPFVKISIFE-VVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAV 382 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 FG N + ++ IG V+D +VV + + + + ++ +S+ + G Sbjct: 383 INAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSMEQIQG 440 Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 V ++ +PMA +GGS F+I + + ++ + FI P L Sbjct: 441 ALVGIALVLAAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVLVA-FILTPALCATMLKP 499 Query: 828 AKNA 831 K Sbjct: 500 IKKG 503 Score = 64.7 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L + IS I + + + ++ W + + L + L F Sbjct: 855 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLF 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+ ++ V +LT IG S + +++ + + M + ++ L Sbjct: 915 TTLRGLSNDVYFVVGLLTTIGLSTKNAILIVEFAKDLMDKEGKG--LIEAALEACRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISTGAGSGSQNAVGTGVIGGMVTATILAI 1018 >gi|288962606|ref|YP_003452900.1| hydrophobic/amphiphilic exporter-1 [Azospirillum sp. B510] gi|288914872|dbj|BAI76356.1| hydrophobic/amphiphilic exporter-1 [Azospirillum sp. B510] Length = 1054 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 66/521 (12%), Positives = 144/521 (27%), Gaps = 41/521 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + ++++P P + + Sbjct: 8 RPVFAWVIAIVIMMAGALAIL-----RLPVEQYPKIAPPT-------------VSITASY 49 Query: 63 DDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 + ++ + L + N ITL+F + +V Sbjct: 50 PGASAKTLEDTVTQVIEQKMTGLDNFRYMSSNSDSSGNVTITLTFEPQANPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ L + +++ + + + D I Sbjct: 110 KLQLAVPLLPQEVQQRGLQVSKAGNDFLLVVGFVSGDGRLSQGDIADYVTSNLQDTISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP L TT +S N G Sbjct: 170 EGVGDVTVFGPQ-HAMRIWLDPDALNNFALTTTDVSNAIKTQNAQVSAGQLGGAPAIAGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + I Sbjct: 229 QINATITAQSRL-------------QTPEQFGAILLRVNPDGSQVRLRDVARIEIGSETY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ I Sbjct: 276 EINAAYNGKPAAGMGIKLATGANALNTAAAVKARVAELQPFFPTGIEVIYPYDTTPFVQL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ +LS+ G ++ + ++ Sbjct: 336 SIHEVIKTLFEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGAFGVLSVFGFSINVLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + S + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMDQITGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514 + FFGG R F++T+ ++ +S+ A+ + A+ I Sbjct: 456 MAFFGGSAGAIYRQFSLTIVSAMALSVLVALVLTPALCATI 496 Score = 80.1 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 31/217 (14%), Positives = 84/217 (38%), Gaps = 8/217 (3%) Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665 + + G L + A + ++ + + +T E+ Sbjct: 281 YNGKPAAGMGIKLATGANALNTAAAVKARVAELQPFFPTGIEVIYPYDTTPFVQLSIHEV 340 Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 I+ +++ + M +++ + L + + + G ++FG N+ + Sbjct: 341 IKTLFEAIVLVFVVMYLFLQ---NFRATLIPTIAVPVVLLGAFGVLSVFGFSINVLTMFG 397 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 ++ IG V+D +VV + + + +S R+ KS+++ G V ++ +P Sbjct: 398 MVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSMDQITGALVGIALVLSAVFVP 455 Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819 MA +GGS + F++ + + ++ ++ + + Sbjct: 456 MAFFGGSAGAIYRQFSLTIVSAMALSVLVALVLTPAL 492 Score = 74.7 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 87/268 (32%), Gaps = 13/268 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + + V S + + + N N Sbjct: 783 PYRMQPSDIDRWYVRNASGQMVPFSAFTTAQWTYGSPKLERYNGSSSVNIQGAAAPGISS 842 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + M+K I T + E + + S I + + + Sbjct: 843 GEAMAEMETMMKTLPPGIGYEWTGLSYEERLSGSQAP----ALYAL--SMIIVFLCLAAL 896 Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ W + I + L + + L G+ ++ +LT IG S + +++ + + Sbjct: 897 YESWSVPVSVILVVPLGVIGAVIAATLRGLPSDVYFQVGLLTTIGLSAKNAILIVEFAK- 955 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803 LY + ++ ++ + L + TSMA + VLP+A+ G + + + Sbjct: 956 --SLYDQGMDLKEAAAEACRQRLRPIIMTSMAFILGVLPLAISTGAGSESQNAIGVGVMG 1013 Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNA 831 G++ A ++ + +Y + Sbjct: 1014 GMISATLLAVLFVPVFFVAVYRLFVRRR 1041 >gi|62289286|ref|YP_221079.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 1 str. 9-941] gi|82699217|ref|YP_413791.1| acriflavin resistance protein [Brucella melitensis biovar Abortus 2308] gi|189023540|ref|YP_001934308.1| Acriflavin resistance protein [Brucella abortus S19] gi|237814778|ref|ZP_04593776.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Brucella abortus str. 2308 A] gi|254688606|ref|ZP_05151860.1| Acriflavin resistance protein [Brucella abortus bv. 6 str. 870] gi|254693088|ref|ZP_05154916.1| Acriflavin resistance protein [Brucella abortus bv. 3 str. Tulya] gi|254696729|ref|ZP_05158557.1| Acriflavin resistance protein [Brucella abortus bv. 2 str. 86/8/59] gi|254729639|ref|ZP_05188217.1| Acriflavin resistance protein [Brucella abortus bv. 4 str. 292] gi|256256854|ref|ZP_05462390.1| Acriflavin resistance protein [Brucella abortus bv. 9 str. C68] gi|260545957|ref|ZP_05821698.1| acriflavin resistance protein [Brucella abortus NCTC 8038] gi|260754076|ref|ZP_05866424.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 6 str. 870] gi|260757298|ref|ZP_05869646.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 4 str. 292] gi|260761120|ref|ZP_05873463.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883103|ref|ZP_05894717.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 9 str. C68] gi|261213323|ref|ZP_05927604.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 3 str. Tulya] gi|297247704|ref|ZP_06931422.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella abortus bv. 5 str. B3196] gi|62195418|gb|AAX73718.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 1 str. 9-941] gi|82615318|emb|CAJ10279.1| Acriflavin resistance protein:Hydrophobe/amphiphile efflux-1 HAE1 [Brucella melitensis biovar Abortus 2308] gi|189019112|gb|ACD71834.1| Acriflavin resistance protein [Brucella abortus S19] gi|237789615|gb|EEP63825.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Brucella abortus str. 2308 A] gi|260097364|gb|EEW81239.1| acriflavin resistance protein [Brucella abortus NCTC 8038] gi|260667616|gb|EEX54556.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 4 str. 292] gi|260671552|gb|EEX58373.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674184|gb|EEX61005.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 6 str. 870] gi|260872631|gb|EEX79700.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 9 str. C68] gi|260914930|gb|EEX81791.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv. 3 str. Tulya] gi|297174873|gb|EFH34220.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella abortus bv. 5 str. B3196] Length = 1051 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 77.8 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E++ I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 87/268 (32%), Gaps = 15/268 (5%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+A + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAAS-SSIFIAAPILLFIYDWRAKNA 831 ++ A +S FI P+ + + Sbjct: 1007 MLAATFIASFFI--PMFYSLIARKPPKK 1032 Score = 48.9 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGLA + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++ ++ V L G + + +L + F A + I R K Sbjct: 974 TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIASFFIPMFYSLIARKPPKKH 1033 >gi|301047878|ref|ZP_07194925.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 185-1] gi|300300221|gb|EFJ56606.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein [Escherichia coli MS 185-1] Length = 1034 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKYVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.3 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 95/254 (37%), Gaps = 7/254 (2%) Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVL 635 G + L V ++ V + +E +G+ + ++ G + T + + Sbjct: 247 GKVTLRVNSDGSVVRLKYVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAI 306 Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694 + ++ P + I++ + + + + + + +++ + L Sbjct: 307 KAKLAELQPFFPQGMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATL 366 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 + + + T A FG N + ++ IG V+D +VV + + + Sbjct: 367 IPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDK 424 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASS 811 + R+ +KS+++ G V +M +PMA +GGS F+I + + ++ Sbjct: 425 LPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLV 484 Query: 812 SIFIAAPILLFIYD 825 ++ + + + Sbjct: 485 ALILTPALCATLLK 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|254707965|ref|ZP_05169793.1| Acriflavin resistance protein [Brucella pinnipedialis M163/99/10] gi|256060443|ref|ZP_05450614.1| Acriflavin resistance protein [Brucella neotomae 5K33] gi|256368753|ref|YP_003106259.1| hydrophobe/amphiphile efflux-1 family protein [Brucella microti CCM 4915] gi|261315457|ref|ZP_05954654.1| hydrophobe/amphiphile efflux-1 family protein [Brucella pinnipedialis M163/99/10] gi|261324432|ref|ZP_05963629.1| hydrophobe/amphiphile efflux-1 family protein [Brucella neotomae 5K33] gi|255998911|gb|ACU47310.1| hydrophobe/amphiphile efflux-1 family protein [Brucella microti CCM 4915] gi|261300412|gb|EEY03909.1| hydrophobe/amphiphile efflux-1 family protein [Brucella neotomae 5K33] gi|261304483|gb|EEY07980.1| hydrophobe/amphiphile efflux-1 family protein [Brucella pinnipedialis M163/99/10] Length = 1051 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 77.8 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E++ I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+A + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032 Score = 49.3 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGLA + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++ ++ V L G + + +L + F A + I R K Sbjct: 974 TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033 >gi|225626819|ref|ZP_03784858.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti str. Cudo] gi|260168085|ref|ZP_05754896.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. F5/99] gi|261757534|ref|ZP_06001243.1| acriflavin resistance protein [Brucella sp. F5/99] gi|225618476|gb|EEH15519.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti str. Cudo] gi|261737518|gb|EEY25514.1| acriflavin resistance protein [Brucella sp. F5/99] Length = 1051 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 77.8 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E++ I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+A + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032 Score = 49.3 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 61/538 (11%), Positives = 136/538 (25%), Gaps = 57/538 (10%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114 + L S+ +R + + ++ + + D + + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ-----NNIDQVISHAIEQSMEIIRQ 169 + + +N K +++ I + + D+ + Sbjct: 641 ARNLPRTIMG-MNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGDVESLTQATKLI 699 Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229 E R + Q + D + + + + Sbjct: 700 TEAAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG-------- 751 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 V D + + + + + F + + Sbjct: 752 ----------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDALV 801 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 K + A + + + I+ +AA + I Sbjct: 802 TVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGSAY 861 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSL 407 + V G+ A++ GL+++ L + Y L ++ + L L Sbjct: 862 QEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLATDL 915 Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467 G T + G+V IGLA + IL+ E E +S + + I ++ Sbjct: 916 RGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVMTS 975 Query: 468 ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 + ++ V L G + + +L + F A + I R K Sbjct: 976 LAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033 >gi|326560223|gb|EGE10611.1| preprotein translocase subunit SecF [Moraxella catarrhalis 7169] Length = 378 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 156/296 (52%), Gaps = 4/296 (1%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 LI + I FM+ + S+L + + + GLN+G+DF GG+ V +PV+ + Sbjct: 60 LIANQRIIPFMKLEKPMIVFSVLSILIGLIAIIVKGLNFGLDFTGGVSANVAYEQPVEQA 119 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V L D Q + LVRL Q G + + L+ + + STI Sbjct: 120 QVIKALADNGFNDAVVQYLGTRQELLVRLPPQDGSAENLSASLDQI---LNFPNNPSTID 176 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + I+G ++ E+ ++ + ++ MLIY+ RF++ ALGA+ L D+ +G FA Sbjct: 177 SISIIGSQLGNEIYLNSLLAMSVALGMMLIYVATRFQFKLALGAVLALFHDVIIVVGIFA 236 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 + G F+LT +AAVL LIGYSVND +VVYDR+R+N + ++ R ++D S+ ETL R+ Sbjct: 237 IMGWPFDLTVLAAVLALIGYSVNDTIVVYDRIRENFRR-VRGLTPRQVLDLSLTETLRRT 295 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + T F+ V+ M GG + F++ + G++ SSI++A+ I L + R Sbjct: 296 IMTVGTVFVVVVAMLFLGGDGLYWFSVALFIGLIAGTYSSIYVASSIPLMMGLSRE 351 >gi|269138465|ref|YP_003295165.1| aminoglycoside/multidrug efflux system [Edwardsiella tarda EIB202] gi|267984125|gb|ACY83954.1| aminoglycoside/multidrug efflux system [Edwardsiella tarda EIB202] gi|304558491|gb|ADM41155.1| Putative aminoglycoside efflux pump [Edwardsiella tarda FL6-60] Length = 1038 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 80/689 (11%), Positives = 185/689 (26%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ + GLL Q ++++P+ P + + Sbjct: 8 RPIFAWVIAIIFSLAGLLAI-----HQLPIEQYPNLAPPT-------------VRISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + + S ITL+F +V Sbjct: 50 PGASAQTLENTVTQVIEQNMTGLDGLMYMSSQSSSSGSASITLTFQSGTDPNEAMQQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L KL + + + + + S++ + + + D + Sbjct: 110 QLSAATRKLPQEVQLQGIRVSKSGDSSLMTVAFVSTDGSMDRQDIADYVASNLQDPLSRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L Q TT + N+ G Sbjct: 170 DGVGSVDAFGSQ-YAMRIWLDPTKLNQFRLTTQDVVSAIKSQNSQIAVGQIGATPAVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + Sbjct: 229 ALNATLMAQSQL-------------QTPAQFRAITLRVNSDGSLVTLGDVAQVELGAEKY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T A L Sbjct: 276 DYLSRFNGKPASGMSIKLASGANELATDARVKAKLAQLEPYFPHGLKVEYAYETTPFVQA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 + T LV +V+++ + + L+ ++ + ++ T A+L +G ++ ++ Sbjct: 336 AIQDVVKTLFEAIALVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVLFAMGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERLMSEEGLSPREATRKSMDQIQGALVGIALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-----KSIDINPL 528 + FFGG R F+IT+ +++ S+ A+ + A+ ++R K Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMIFSVLVALILTPALCATLLRPVNKTQLHAKKGFFGWF 515 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-----KGGIQLGV 583 +R F + G S+L + S+ L T L+ F +G + Sbjct: 516 NRTFERSALRYENGVGRVVRNGGRSMLLYLLSLGGLGTLYLHLPTSFLPLEDRGVFMTQI 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +E ++ + + D + F + G+ R+ +K Sbjct: 576 QLPVGATQQETLKVVEKVERYLLVDEGKDVQSVFSIVGAGPGGNGQNVARMFVRLKPWDQ 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + + + Sbjct: 636 RTGDDDSAAAIIERASRAFANIREARVFA 664 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 83/241 (34%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + +A ++ ++ P Sbjct: 260 VTLGDVAQVELGAEKYDYLSRFNGKPASGMSIKLASGANELATDARVKAKLAQLEPYFPH 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I+ + + + + + +++ + L + + + T Sbjct: 320 GLKVEYAYETTPFVQAAIQDVVKTLFEAIALVFLVMYLFLQNLRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A++ IG V+D +VV + + + +S R+ KS+++ Sbjct: 380 FAVLFAMGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERLMSEEGLSPREATRKSMDQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA +GG+ F+I + ++ + ++ + + + Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMIFSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 R 498 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 79/248 (31%), Gaps = 10/248 (4%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + G + ++GE + + G S + + Sbjct: 789 VRNSQGDMVPFSAFANTRWNYGSPRLERYNGEAAVEIVGEAAQGISTGRAMAIMEQLVSE 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ + + + W + + L Sbjct: 849 LPSGFGLEWTGMSYQERLSGAQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + L G+E ++ +LT+IG S + +++ + + L + + Sbjct: 906 GVLGAVCATWLRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNRSGKDLLEATL 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A VLP+ + G + + G++ A SI+ P+ Sbjct: 963 EACRLRLRPILMTSLAFIFGVLPLTLSHGAGSGSQHAVGTGVLGGMIAATLLSIYFV-PL 1021 Query: 820 LLFIYDWR 827 + R Sbjct: 1022 FFILVRRR 1029 >gi|271499617|ref|YP_003332642.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Dickeya dadantii Ech586] gi|270343172|gb|ACZ75937.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya dadantii Ech586] Length = 1048 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 72/686 (10%), Positives = 181/686 (26%), Gaps = 49/686 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ M+ G L L + + ++P+ P + + Sbjct: 8 RPIFAWVIAIMVMLTGTLAIL-----KLPIAQYPTIAPPA-------------VQITATY 49 Query: 63 DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 + + ++ + + K + +ITL+F + +V Sbjct: 50 PGADAKTLQDTVTQVIEQNMNGIDKLLYMSSNSDSSGTVQITLTFDADANPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + +++ D + + + D I Sbjct: 110 KLQLATPLLPQEVQQQGVSVQKSSSSFLMVLGFVSDDSSVTQQDIADFVGSTIKDPISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L TT+ + + NN G Sbjct: 170 RGVGDTQLFGAQ-YAMRIWLDPDKLNNYQLTTSDVVTAIQVQNNQIAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + I Sbjct: 229 KLNASIIAQTRL-------------NSPEQFGNILLKVNQDGSQVRLNNVARIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T A L+ + Sbjct: 276 TTIARYNGRPAAGLGIKLATGANALDTASAVKAEIAKLQPTFPAGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIYEVVKTLVEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F+IT+ ++++S+ A+ + A+ I++ F Sbjct: 456 MAFSGGSTGAIYRQFSITIVSAMVLSVLVALILTPALCATILKPVPNHGEKKGFFGWFNR 515 Query: 534 IPDCIAIQF--------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 + D + + V ++ + + +G + V Sbjct: 516 LFDKSTHHYTSSVANILRSTGRYLVVYLLVVASLGFAFTQIPSSFLPQEDQGVLLTMVQL 575 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 + L+ + + + + + F V G + Sbjct: 576 PVGATQESTQKVLDQVSDYYLHNEKDNVKSVFTVNGFGFAGRGQNMGISFASLNDWDERK 635 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIV 671 + + ++ ++ Sbjct: 636 GAANKVDAIIGRAFGAFSQIKEAIVI 661 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L+ V + + L +++ ++ K+ Sbjct: 258 SQVRLNNVARIELGGENYTTIARYNGRPAAGLGIKLATGANALDTASAVKAEIAKLQPTF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + + + + +++ + + L + + + Sbjct: 318 PAGLKVVYPYDTTPFVKISIYEVVKTLVEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + A++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +PMA GGS F+I + +V++ ++ + + Sbjct: 436 GQIQGALVGIALVLSAVFIPMAFSGGSTGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 64.7 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 74/229 (32%), Gaps = 7/229 (3%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S + + + E+ + G++ E + L Sbjct: 791 TSNQMVPFSAFASAHWEYGSPRLERYNGLPSVELVGEAAPGKSTGEAMALMEELASQLPP 850 Query: 651 IQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + G L ++I + + L + W + + L + + Sbjct: 851 GIGFDWTGMSYQERLAGNQAPALLIISAIVVFLCLAALYESWSIPFSVMLVVPLGVFGAV 910 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 L G+E ++ +LT IG S + +++ + + M+ + ++ Sbjct: 911 MAAGLRGMENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LVEATLDAVRMR 968 Query: 769 LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814 L + TS+A + V+P+ + G + + G++ A +I+ Sbjct: 969 LRPILMTSLAFILGVVPLVISTGAGSGAQNAVGTGVMGGMITATVLAIY 1017 >gi|298370064|ref|ZP_06981380.1| protein-export membrane protein SecD [Neisseria sp. oral taxon 014 str. F0314] gi|298281524|gb|EFI23013.1| protein-export membrane protein SecD [Neisseria sp. oral taxon 014 str. F0314] Length = 620 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 167/506 (33%), Positives = 279/506 (55%), Gaps = 28/506 (5%) Query: 30 SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P M K N + LGLDLRGG H ++VD + + YS ++R L++ I Sbjct: 104 NLLADSPEWMAKINANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRRRKI 163 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 ++RQ +N + + F D+ + ++ + + + Sbjct: 164 RFGTIRQAENGLIVPFQDASDVQKAIPELQKLFVEAK------------LEADGSNLILS 211 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 LS++ + +V S A++Q++ + R++++G++E IQ+ G RI++QLPG QD ++ + ++ Sbjct: 212 LSEDAMQKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGIDRIVVQLPGVQDTAKAKDII 271 Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVR--------FLRDSDGNQYLVEDKVEISGIHLNGAT 258 G TA + V + +K G + + LV +VE++G ++N A Sbjct: 272 GRTATLEVRMVEDDPAKVQAALGGNVPSGYELLYSAGENPAPTLVSKQVELTGDNINDAQ 331 Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314 +FD V I+ D G F E+T N+GK +A+VL + V+TAPVI AI Sbjct: 332 PSFDEMGSPA-VSINLDGSGGTIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRSAITG 390 Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374 G+ QISG+ T A + +LRAGSL + IVEER +G LG ++I KG + + G + Sbjct: 391 GRVQISGSMTTAEANDTSLLLRAGSLAAPMEIVEERTIGPSLGKENIQKGFDSTLWGFAV 450 Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434 + +FM+V Y G+ + ++ N++ +A+LS L ATLTLP IA + L +G+A+DSN+L+ Sbjct: 451 VAVFMVVYYRMMGVFSTIALTANILFLIAILSALQATLTLPGIAALALTLGMAIDSNVLI 510 Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494 NERIREE R ++++G+ A+STI DSN+T+LIA + L FG G VRGFA+ L Sbjct: 511 NERIREELRAGVPPQQAINLGYQHAWSTIVDSNLTSLIAGIALLIFGSGPVRGFAVVHCL 570 Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520 I+ SM++++ + RA++ ++ Sbjct: 571 GIVTSMYSSVVVSRALVNLWYGRRRK 596 Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 84/208 (40%), Gaps = 4/208 (1%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 G + + + I +GP + +E I+KG + + Sbjct: 393 VQISGSMTTAEANDTSLLLRAGSLAAPMEIVEERTIGPSLGKENIQKGFDSTLWGFAVVA 452 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ + ++ + + L +I + + L +AA+ +G +++ V++ Sbjct: 453 VFMVVYYRM-MGVFSTIALTANILFLIAILSALQATLTLPGIAALALTLGMAIDSNVLIN 511 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 +R+R+ ++ + + I+ V +++ + I+ + + ++G + FA+ Sbjct: 512 ERIREELRA---GVPPQQAINLGYQHAWSTIVDSNLTSLIAGIALLIFGSGPVRGFAVVH 568 Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829 GIV + SS+ ++ ++ Y R K Sbjct: 569 CLGIVTSMYSSVVVSRALVNLWYGRRRK 596 Score = 38.5 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 18/44 (40%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRIS 45 R W +L + + ++ +LPN ++ + + I+ Sbjct: 3 RYPLWKYLLIAFTVVLAVIYSLPNLFGETPAVQVSTNRQSIIIN 46 >gi|254709456|ref|ZP_05171267.1| Acriflavin resistance protein [Brucella pinnipedialis B2/94] gi|256030950|ref|ZP_05444564.1| Acriflavin resistance protein [Brucella pinnipedialis M292/94/1] gi|261316978|ref|ZP_05956175.1| hydrophobe/amphiphile efflux-1 family protein [Brucella pinnipedialis B2/94] gi|265988014|ref|ZP_06100571.1| hydrophobe/amphiphile efflux-1 family protein [Brucella pinnipedialis M292/94/1] gi|261296201|gb|EEX99697.1| hydrophobe/amphiphile efflux-1 family protein [Brucella pinnipedialis B2/94] gi|264660211|gb|EEZ30472.1| hydrophobe/amphiphile efflux-1 family protein [Brucella pinnipedialis M292/94/1] Length = 1051 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E++ I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+A + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032 Score = 49.3 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGLA + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++ ++ V L G + + +L + F A + I R K Sbjct: 974 TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033 >gi|167765034|ref|ZP_02437155.1| hypothetical protein BACSTE_03428 [Bacteroides stercoris ATCC 43183] gi|167697703|gb|EDS14282.1| hypothetical protein BACSTE_03428 [Bacteroides stercoris ATCC 43183] Length = 1010 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 89/687 (12%), Positives = 189/687 (27%), Gaps = 53/687 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +L +I G + + +PS Sbjct: 9 RRPVLSTVLTLIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + + ++ + + +Q ++IT+ F S E A+ V + Sbjct: 55 NADVIENQITEPLEQNINGIPGIRSLSSVSQQGSSRITVEFELSVDLETAANDVRDKVSR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L D + + I++ D +E S +Q+ Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP ++ T + N + + Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPIDVKNAVDNENVELPSGSIEGNTIELTIRTLG 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 L T + ++ E G R A + Sbjct: 233 L--------------------MHTAEEFNNLILKEDGNRIVRFSDIGRAELGPADIKSYM 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + + + + ++ N S Sbjct: 273 KMNGVPMVGVVVIPQPGANHIQIADAVYERMENMKKDLPEDVHYSYGFDNTKFIRASIDE 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 K T LV+I++F+ + + LV I +++I ++ L G ++ + S+ IV Sbjct: 333 VKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +GL VD I++ E I K + G + + + IT + + F Sbjct: 393 LAVGLVVDDAIVMTENIYVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452 Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL----I 534 G R F+I + S++IS F A++ + ++ ++ +S FF + Sbjct: 453 GMTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREKQSWFYRKTEPFFEGLNNL 512 Query: 535 PDCIAIQFMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 F+R R+ + + + ++ + I + V Sbjct: 513 YSRSLAAFLRKRWIALPFTAATILIIGFLWNHIPAEMAPLEDRSQISINTRGAEGVTYEY 572 Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 +R E + S G N + L+ Q V E + K + + Sbjct: 573 IRDYTEDINQLVDSIVPDAEAVTARVSSGSGNVRITLKDMQDRDYTQMEVAEKLSKAVQK 632 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671 + + + ++ Sbjct: 633 KTMAHSFVQQSSSFGGRRGGMPVQYVL 659 Score = 84.7 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 74/240 (30%), Gaps = 6/240 (2%) Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R+ L I N +V Q V E ++ ++ Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIQIADAVYERMENMKKDLPEDVHYSYG 319 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 I + + ++I W L + + + L Sbjct: 320 FDNTKFIRASIDEVKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G N+ ++ A++ +G V+D +V+ + + + ++ + E + Sbjct: 380 GFSINVLSMLAIVLAVGLVVDDAIVMTENI---YVRIEKGMPPKEAGIEGAKEIFFAVIS 436 Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 T++ P+ G F+I ++ +++++ +++ + + R K + Sbjct: 437 TTITLVAVFFPIVFMDGMTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREKQS 496 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 6/146 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + L + T+ L I L F GI N+ + ++ LIG + +++ + Sbjct: 866 SFKDPLIIMLTVPLAIAGALVFMYFGGITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805 + T I + + L + TS + + ++P+A G + G+ Sbjct: 923 QKQETGEDKMQAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982 Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831 +V+ +++I I ++ R+K Sbjct: 983 LVSTLLTMYIVPAIYSYVSTNRSKLK 1008 >gi|27366962|ref|NP_762489.1| inner membrane efflux transporter of RND family multidrug efflux pump [Vibrio vulnificus CMCP6] gi|27358529|gb|AAO07479.1| Inner membrane efflux transporter of RND family multidrug efflux pump [Vibrio vulnificus CMCP6] Length = 1050 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 77/692 (11%), Positives = 184/692 (26%), Gaps = 48/692 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + + +P P + + Sbjct: 8 QRPKFALVISIILTLAGAIALAV-----LPVAEYPKISPP-------------SVSVTAY 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 ++ D + + + E + S + + + ++F + V Sbjct: 50 YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + SKL + + + +++ I DQ+ Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + + DP ++ L TT+ + N G + Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYSALSQQNVQVAAGRIGAAPYNNP 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ + K + + + + + Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANSDGSSVYLKDVARVELGKKF 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + S ++ + + + L L Sbjct: 277 YDGNGKFRGRDASIVALSLQSDANALESGQAVMELLERLSGNFPAGMAYETSYDTTVFVA 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV+ V ++ + + L+ +I +++I T A++ G T+ + Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMLATGFTINTVT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474 + G++L IG+ VD ILV E + K+ S + M I S + L Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVF 456 Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525 + L G R FA+T+ +S++IS A+++ A+ + K+ + Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLAPALCSLVLKQGGENTANWFKTFNR 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 ++ + + + T + KG + + V Sbjct: 517 GLERVTERYGQVAGFLVKKSLLLVAFFMVAVAAVAFFAKTTSTAFVPQEDKGILLVNVQL 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 LS L DG + + + Sbjct: 577 PDSASLSRTEEVTNHLLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRN 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 + + +I+ + V+ + Sbjct: 637 GLN-GNHSANAIAQRINGRAAMELPQAVVFAM 667 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 76/197 (38%), Gaps = 7/197 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 A +LE + + T +T + + + +++ I +++ +++ Sbjct: 303 ESGQAVMELLERLSGNFPAGMAYETSYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLG 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 L + + + + T G N + ++ IG V+D ++V + + Sbjct: 363 ---SARATLIPVVAIPVSLIGTFAVMLATGFTINTVTLFGLILAIGIVVDDAILVIENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802 SIS R ++ E G + +++ LP+A+ G FA+ + Sbjct: 419 DTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTIC 478 Query: 803 FGIVVAASSSIFIAAPI 819 +V+++ +++ +A + Sbjct: 479 ISVVISSINALTLAPAL 495 Score = 47.8 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 48/407 (11%), Positives = 105/407 (25%), Gaps = 23/407 (5%) Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 LL P + G+ + G + + + + + + G A + Sbjct: 592 LLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRNGLNGNHSANAIAQRI 651 Query: 467 NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521 N + V+F G AV G G + S + M I + Sbjct: 652 NGRAAMELPQAVVFAMGPPAVPGMGAASGFEFALEDTLGRSRTDLAMVMGEMIQAANQAP 711 Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 I + +P L + +N F ++ Sbjct: 712 EIAYTFSTFRANVPHYYVDIDREKAQQLGIPLSSIFQTLQGNLGSMYVNDFTMFGKNFRV 771 Query: 582 GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + A+ V S S + D + + Sbjct: 772 TMQADSEHRSSMDDLSRFHVRTSSGEMVPLSTLLSYEQVFEPDVAWRYNMYRSAIIQGQP 831 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685 A + I Q ++ + + G + + + IY + Sbjct: 832 APGYSSGDAIAAMERIAAELLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L I + + + L G NL A ++ LI + + +++ + + Sbjct: 892 QYESWTIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792 + ++ + + TS + + + P+ G+ Sbjct: 952 --QQREDKEVAIDEAAVQGGKLRFRAVNMTSWSFILGIFPLIFAAGA 996 >gi|167561739|ref|ZP_02354655.1| hydrophobe/amphiphile efflux family protein [Burkholderia oklahomensis EO147] Length = 1066 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 69/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+ + ++P+ P + + + Sbjct: 8 RPIFAWVIAIILMLAGIAAIF-----TLPISQYPTIAPP-------------SIQITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S ITL+FA + +V Sbjct: 50 PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L ++ L T +++ N + + + + + D I Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP+RL T ++ N G G Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTRLTNYGLTPVDVTTAITQQNVQIAGGQIGGTPAVPGT 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + + + + + + IG Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAKIGLGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + L + Sbjct: 276 SFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDDLSKYFPHGLVVKYPYDTTPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + ++ ++ + ++ T A++S++G ++ S+ Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPREATRKAMGQITGALVGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F++T+ ++++S+ A+ + A+ I +K I Sbjct: 456 VAFSGGSVGAIYRQFSLTIVTAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F +R S L + Sbjct: 511 FFGWFNRNFNASRDKYHVGVHHVIKRSGRWLIIY 544 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + L +++A + + +++ Sbjct: 258 SQVRLKDVAKIGLGGENYSFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDDLSKYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + R I + + ++ + + + +++ + + + + + Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T ++ G N ++ ++ IG V+D +VV + + + +S R+ K++ Sbjct: 378 GTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVTAMVLSVLVALILTPAL 492 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + ++G ++ Q PG S Q K + + + Sbjct: 816 ERYNGISAMEIQGQAAPGKSTGQAMTAMESLAKKLPNGIGYSWTGLSFQEIQSGSQAPIL 875 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + +++ + + + W I + L + L L G+E ++ +LT Sbjct: 876 YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 +G S + +++ + R+ + + + ++ L + TS+A + VLP+A+ Sbjct: 933 TVGLSAKNAILIVEFARE--LQQSEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990 Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 G + + + G++ A +IF+ + Sbjct: 991 SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026 Score = 57.4 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 61/516 (11%), Positives = 142/516 (27%), Gaps = 32/516 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I ++I +GLL + P + G + Sbjct: 536 RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + L + + S G Q + + D +++ KV + Sbjct: 590 LANISDYLLNDEKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYAQRQHANQKVQALIGR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA--IEQSMEIIRQRIDQIGISES 179 + + ++ + + ++ +A ++ R ++ + + Sbjct: 650 MFGRYAGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGHGHDALMAARNQLLMLAAKDP 709 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 T+Q + + + + D R + ++ + S V D+DG Sbjct: 710 TLQGVRPNGLNDTPQYKVDIDREKANALG---VTASAIDQTFSIAWASSYVNNFLDTDGR 766 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 KV + T + + A T + + Sbjct: 767 I----KKVYVQSDAPFRMTPDDMNIWYVRNGSGGMVPFSAFSTGHWTYGSPKLERYNGIS 822 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + T + G L+ E ++ Sbjct: 823 AMEIQGQAAPGKSTGQA------MTAMESLAKKLPNGIGYSWTGLSFQEIQSGSQA---- 872 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 AI +V + L + + L VI L +L G + G Sbjct: 873 ---PILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVG 929 Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 ++ +GL+ + IL+ E RE + + + I +++ ++ + L Sbjct: 930 LLTTVGLSAKNAILIVEFARELQQSEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLA 989 Query: 479 FF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G + + ++ + F AI ++ Sbjct: 990 ISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025 >gi|259909230|ref|YP_002649586.1| Acriflavine resistance protein B [Erwinia pyrifoliae Ep1/96] gi|224964852|emb|CAX56374.1| Acriflavine resistance protein B [Erwinia pyrifoliae Ep1/96] gi|283479280|emb|CAY75196.1| multidrug efflux transporter [Erwinia pyrifoliae DSM 12163] Length = 1046 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 69/684 (10%), Positives = 175/684 (25%), Gaps = 43/684 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + ++++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGTLSIL-----KLPIEQYPNVAPPAIE---------ITATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + S ++TL+F + +V LQ Sbjct: 54 AKTLQDSVTQVIEQNMNGIDGLMYMGSSSDSSGTLQLTLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ D + S + D I Sbjct: 114 ATPLLPQEVQQQGIRVQKSSSSFLMVAGFINDSGTMTQNDISDYVGSNIKDPISRVSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L T + N G Sbjct: 174 DTQLFGAQ-YAMRIWMDPHKLNNYQLTPVDVISAINTQNAQVAAGQLGGSPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + R +I Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNADGSRVRLSDVAHIELGGENYEVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T L + S + Sbjct: 280 RYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFFPSGLKVVYPYDTTPFVKISINE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A++S G ++ ++ G+V Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMDQIQGALVGIALVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVIVALILTPALCATMLKPVNKGDHGKTTGFFGWFNRLF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + V ++ + L + +G Sbjct: 520 DKSTHHYTDSVGHIVRSTGRYLVIYLLIVVGMAFLFLRLPTAFLPEEDQGVFLTMAQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + ++ + + F V G +K Sbjct: 580 GATQERTQKVLDQVTDYYLNKEKANVNSVFTVNGFGFAGRGQNTGLAFVSLKPWDERSGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671 + + + ++ Sbjct: 640 ANKVPAITGRAMGALSAIKDAMVI 663 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V LS V + ++ + + L +++ ++ K+ Sbjct: 258 SRVRLSDVAHIELGGENYEVIARYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + + + + +++ + + L + + + Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G V ++ +PMA +GGS F+I + +V++ ++ + + Sbjct: 436 DQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALILTPAL 492 Score = 65.9 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 7/193 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G A E + L T + G L + IS I + + + Sbjct: 828 GQPAAGKSSGEAMDLMQELASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L F L G+ + V +LT IG S + +++ + Sbjct: 888 AALYESWSIPFAVMLVVPLGVIGALIFTTLRGLSNDAYFVVGLLTTIGLSAKNAILIVEF 947 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + M+ + +++ L + TS+A + VLP+A+ G + Sbjct: 948 AKDLMEKEGKG--LVEATLEAVRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTG 1005 Query: 801 MAFGIVVAASSSI 813 + G+V A +I Sbjct: 1006 VMGGMVTATVLAI 1018 >gi|306842439|ref|ZP_07475090.1| hydrophobe/amphiphile efflux-1 family transporter [Brucella sp. BO2] gi|306844932|ref|ZP_07477514.1| hydrophobe/amphiphile efflux-1 family transporter [Brucella sp. BO1] gi|306274761|gb|EFM56545.1| hydrophobe/amphiphile efflux-1 family transporter [Brucella sp. BO1] gi|306287295|gb|EFM58775.1| hydrophobe/amphiphile efflux-1 family transporter [Brucella sp. BO2] Length = 1051 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVNKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRIWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDVAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLDGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVIHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 78.6 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E+I I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVIHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 67.4 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+A + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032 Score = 48.9 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLNQASENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGLA + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++ ++ V L G + + +L + F A + I R K Sbjct: 974 TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033 >gi|37519361|gb|AAQ92181.1| inner membrane pump protein [Pseudomonas fluorescens] Length = 1048 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 73/687 (10%), Positives = 188/687 (27%), Gaps = 39/687 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L L + ++++PS P + Sbjct: 8 RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIQVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + S I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKSVKNFLLVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGSQ-YAMRVWLDPAKLNNFSLTPVDVKAAIAAQNIQVSSGQLGGLPAAPGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++G Sbjct: 233 TIIGKTRL-------------QTAEQFNKILLKVNKDGSQVRLSDVADVGLGGENYSINA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L+ + S Sbjct: 280 QFNGAPASGLAVKLANGANALDTAKALRNTINTLKPFFPQGMEVVFPYDTTPVVTESIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+F+ + + ++ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531 G + F+IT+ ++ +S+ A+ A+ + + K +R Sbjct: 460 SGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRS 519 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 F + + +L + + + F GVL + Sbjct: 520 FDRGVKSYERGVGNMLAHKAPYLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTP 579 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + + + I ++ D E + + + G + A + + + Sbjct: 580 AGSSAQRTQVVIDEMRSYLLDKESSAVASVFTVNGFNFAGRGQSSGLAFIMLKPWDQRDA 639 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI 678 +N+ +++ ++ + Sbjct: 640 ENSVFKLAARAQQHFFTFRDAMVFAFA 666 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V LS V + I+ Q + L +++ + L + Sbjct: 258 SQVRLSDVADVGLGGENYSINAQFNGAPASGLAVKLANGANALDTAKALRNTINTLKPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I+ + ++ + + + + +++ + + + T+ + + Sbjct: 318 PQGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A FG N + ++ IG V+D +VV + + + +S ++ KS+ Sbjct: 378 GTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA + GS F+I + + ++ ++ + Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMALSVLVALIFTPAL 492 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 67/161 (41%), Gaps = 7/161 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 +S + + + + ++ W + + + L I L +L G+ ++ +LT IG Sbjct: 876 ALSLLMVFLCLAALYESWSIPIAVMLVVPLGIIGALLATSLRGLSNDVYFQVGLLTTIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 + + +++ + ++ L+ S RD ++ L + TS+A + V+P+A+ Sbjct: 936 AAKNAILIVEFAKE---LHEQGRSLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 G + + G++ A +IF + + + Sbjct: 993 GSGSQHAIGTGVIGGMITATVLAIFWVPLFFVTVSSIGQRK 1033 >gi|310766866|gb|ADP11816.1| Acriflavine resistance protein B [Erwinia sp. Ejp617] Length = 1046 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 69/684 (10%), Positives = 175/684 (25%), Gaps = 43/684 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + ++++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGTLSIL-----KLPIEQYPNVAPPAIE---------ITATYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + S ++TL+F + +V LQ Sbjct: 54 AKTLQDSVTQVIEQNMNGIDGLMYMGSSSDSSGTLQLTLTFESGTDADIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ D + S + D I Sbjct: 114 ATPLLPQEVQQQGIRVQKSSSSFLMVAGFINDSGTMTQNDISDYVGSNIKDPISRVSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L T + N G Sbjct: 174 DTQLFGAQ-YAMRIWMDPHKLNNYQLTPVDVISAINTQNAQVAAGQLGGSPPVKGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + R +I Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNADGSRVRLSDVAHIELGGENYEVIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T L + S + Sbjct: 280 RYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFFPSGLKVVYPYDTTPFVKISINE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A++S G ++ ++ G+V Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMDQIQGALVGIALVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F+IT+ ++++S+ A+ + A+ + + Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVIVALILTPALCATMLKPVNKGDHGKTTGFFGWFNRLF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + V ++ + L + +G Sbjct: 520 DKSTHHYTDSVGHIVRSTGRYLVIYLLIVVGMAFLFLRLPTAFLPEEDQGVFLTMAQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + ++ + + F V G +K Sbjct: 580 GATQERTQKVLDQVTDYYLNKEKANVNSVFTVNGFGFAGRGQNTGLAFVSLKPWDERSGA 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671 + + + ++ Sbjct: 640 ANKVPAITGRAMGALSAIKDAMVI 663 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V LS V + ++ + + L +++ ++ K+ Sbjct: 258 SRVRLSDVAHIELGGENYEVIARYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + ++ + + + + +++ + + L + + + Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T + FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G V ++ +PMA +GGS F+I + +V++ ++ + + Sbjct: 436 DQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALILTPAL 492 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 7/193 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G A E + L T + G L + IS I + + + Sbjct: 828 GQPAAGKSSGEAMDLMQELASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L F L G+ ++ V +LT IG S + +++ + Sbjct: 888 AALYESWSIPFAVMLVVPLGVIGALIFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEF 947 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + M+ + +++ L + TS+A + VLP+A+ G + Sbjct: 948 AKDLMEKEGKG--LVEATLEAVRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTG 1005 Query: 801 MAFGIVVAASSSI 813 + G+V A +I Sbjct: 1006 VMGGMVTATVLAI 1018 >gi|326317837|ref|YP_004235509.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374673|gb|ADX46942.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1069 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 64/552 (11%), Positives = 151/552 (27%), Gaps = 33/552 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G + L+++P P Sbjct: 8 RPIFAWVIAIVIMLAGAMSI-----RNLPLEQYPDIAPPRV---------SISATYTGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ L + ++ TL+F + +V LQ Sbjct: 54 AKTVEESVTQVIEQQLKGLDNLIYMGSTSDASGNSRTTLTFNAGTNIDVAQVQVQNKLQQ 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S+L + + T +++ ++ I +D I + Sbjct: 114 AMSRLPPAVQSRGVTVTKGGNDYLMIVTFTSPDPSVTQVDIGDYISSNLVDVISRIDGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP+RL + + + N G Sbjct: 174 DVATLGTG-YAMRVWMDPARLEKYALMPSDVGNALNAQNAQVSAGQLGALPAVGQQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + ++ + + I + Sbjct: 233 TITARSKL-------------QSREEFENIVLKVATDGSIVRLKDVARIELGADNLTITS 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + E A LR S Sbjct: 280 RLNGQPGAGMGVVLADGANAMAVAEAVNAKVAELRPFFPYQLKPFTSYDTTPFVEASIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 LV++V+++ + + L+ ++ + ++ T +LS G ++ ++ G+V Sbjct: 340 VIKALVEAMALVVLVMYLFLQNFRATLIPAIAVPVVLLGTFGVLSAAGYSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + +T + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMAEITPALVGIALTLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG R F+IT+ ++++S+ A+++ A+ +++ + + + Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVLVALTLTPALCATLLKPIPKGAHSPHGGAPRRGPLGW 519 Query: 538 IAIQFMRARFWG 549 + F Sbjct: 520 VDRFFTGFNHRF 531 Score = 82.4 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 85/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V I+ + + + +++A + ++ Sbjct: 258 SIVRLKDVARIELGADNLTITSRLNGQPGAGMGVVLADGANAMAVAEAVNAKVAELRPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P T I + I ++ + +++ +++ + + L + + + Sbjct: 318 PYQLKPFTSYDTTPFVEASIEEVIKALVEAMALVVLVMYLFLQNFRATLIPAIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G + G N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFGVLSAAGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 E V ++ +PMA +GGS F+I + +V++ ++ + + Sbjct: 436 AEITPALVGIALTLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVLVALTLTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 49.7 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 G + + V S S + + N F+ Sbjct: 783 PFRMLPQDIGPWTVRNNQGQMVPFSAFSSTYWTYGSPQLQRYNGSPSYEFVGDAAPGVSS 842 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + E++K+ I T + + L+ + ++ + + + Sbjct: 843 GAAMGAIDEIMKQMPPGIGYEWTGASYQERLSGSQAPLLYA--ISILFVFLCLA---ALY 897 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W I + L I L + G+ ++ +LT +G + + +++ + Sbjct: 898 ESWSVPFSVILVVPLGIVGALLGIGIRGMSNDVYFQVGLLTTVGLASKNAILIVEFA--- 954 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 +L S D +++ L + TS+A VLP+ Sbjct: 955 TQLQAAGRSVIDATLEAVRLRLRPILMTSLAFGFGVLPL 993 >gi|269966432|ref|ZP_06180517.1| protein export protein SecD [Vibrio alginolyticus 40B] gi|269829019|gb|EEZ83268.1| protein export protein SecD [Vibrio alginolyticus 40B] Length = 599 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 156/513 (30%), Positives = 272/513 (53%), Gaps = 27/513 (5%) Query: 25 NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84 F S+ + + M + I LGLDLRGG +L VD + DE+++ L+ + Sbjct: 100 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALIDEIKANLRDQ 159 Query: 85 GIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143 + +R + N+IT+ + E +V FL+ + ++ + Sbjct: 160 RVRGVQVRAESGNRITV----NSDSEQALSEVNKFLRQ--------NYPGWISKSSSRGF 207 Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203 + S+ NI + S ++Q+++I+R RI+++GI+E+ +QR G I I+LPG QDP++ + Sbjct: 208 VLEPSEQNIQEFQSSTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 267 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 ++G TA ++F++V + + L+D+DG ++ + ++G H+ A A D Sbjct: 268 NVIGATASLAFYEVKD--ASQAHSSQDLVLQDNDGRTVILAKRPVLTGEHIVNARAGVDK 325 Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312 V G + V R+ V + + Q+ Sbjct: 326 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERVISVATIQSQ 385 Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372 + +I+G +++ A LA +LRAGSL + IVEER +GA LG+++I G A+ G+ Sbjct: 386 LGSQFRITGAGSMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGM 445 Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431 L + FM + Y + G VA+ ++ N++ L L++LL A LTLP IAG+VL +G+AVD+N Sbjct: 446 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 505 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +++ ERI+++ R+ +S ++D+GF A+STI D+NIT +I V+L+ G G ++GFA+T Sbjct: 506 VIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALT 565 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +GL +L SMFT + RAM+ I + + Sbjct: 566 LGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 598 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + TI +G + E I G + + L ++ + + Sbjct: 397 SMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 456 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L ++ LG AL G L +A ++ +G +V+ V++++R++ Sbjct: 457 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 515 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 M+ SF ID + + ++ I+ + + G I FA+ + G++ Sbjct: 516 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 572 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + + +F + ++ I+ A+ Sbjct: 573 SMFTGVFASRAMINLIWGRDARR 595 >gi|312960631|ref|ZP_07775137.1| hydrophobic/amphiphilic exporter-1 [Pseudomonas fluorescens WH6] gi|311285157|gb|EFQ63732.1| hydrophobic/amphiphilic exporter-1 [Pseudomonas fluorescens WH6] Length = 1032 Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats. Identities = 83/687 (12%), Positives = 187/687 (27%), Gaps = 47/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I GLL PQ + ++P+ P + + Sbjct: 8 RPIFAWVVALFILLAGLLAI-----PQLPVAQYPNVAPPK-------------VEIYAVY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118 L + + L IT +F E V Sbjct: 50 PGASAQTLDESVVSLIEQELNGADHLLYFESQSSLGSATITATFQPGTNPEMAQVDVQNR 109 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 L+ V +L + L ++L + + S + R ++++ + Sbjct: 110 LKAVEPRLPQAVTQQGLQVEKVSAGFLLLVTLTSNDGKLDDVALSDYLARNVMNELKRLD 169 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + + DP +L T A ++ N G + Sbjct: 170 GVGKAQLYGA-ERAMRIWIDPQKLIGFNLTPADVNAAISAQNAQVSAGSIGDLPGTATQE 228 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 + K ++S + + + Sbjct: 229 ITAAILVKGQLS-------------TPAEFADIVLKANPDGSTVRIGDVARVEIGSQEYQ 275 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 L + T L + S Sbjct: 276 FSTRLNGKPSTAVSVQLAPGANALNTATLVRAKMDELSRYFPANVEYKIPYDTSPFVKVS 335 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 + T LV V+F+ + ++ L+ + + ++ T A L LLG ++ + ++ Sbjct: 336 ITKVVYTLLEAMALVFAVMFLFLQNVRYTLIPTLVVPIALMGTFATLLLLGFSINVLTMF 395 Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ VD I+V E + + S + + I + + + + Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMVTEGLSPKEATRKAMGQITGAIVGITLVLVAVFLPM 455 Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFF 532 F G + F+++M SIL S F A+++ A+ +++ F Sbjct: 456 AFMPGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPIAQGEHHAKGGFFGWFN 515 Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL- 591 + + ++ + + S + + + LL G + + + D+ Sbjct: 516 KRFEQLTDRYEGWVAYALKRSGRYLLIYLVLLVGLGWMFTRLPSSFLPVEDQGYTITDIQ 575 Query: 592 ----SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + ++ + + G + + + + S + K +E Sbjct: 576 LPPGASKNRTVQVAEQIEAHNAGEPGVGDTTMIMGFSFSGSGQNAALAFTTLKDWSERSS 635 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 + + EL V+ Sbjct: 636 DDSATSIADRANMAFSELKDAIAYAVL 662 Score = 77.8 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 87/243 (35%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V Q S + + +++ ++ +++ Sbjct: 257 STVRIGDVARVEIGSQEYQFSTRLNGKPSTAVSVQLAPGANALNTATLVRAKMDELSRYF 316 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + + I K + ++ + + +++ + + L + + + Sbjct: 317 PANVEYKIPYDTSPFVKVSITKVVYTLLEAMALVFAVMFLFLQNVRYTLIPTLVVPIALM 376 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T L G N+ + ++ IG V+D +VV + + + T +S ++ K++ Sbjct: 377 GTFATLLLLGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMVTEGLSPKEATRKAM 434 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ LPMA GSV F++ MA I+ +A ++ + + Sbjct: 435 GQITGAIVGITLVLVAVFLPMAFMPGSVGVIYQQFSLSMATSILFSAFLALTLTPALCAT 494 Query: 823 IYD 825 + Sbjct: 495 LLK 497 Score = 49.7 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 76/231 (32%), Gaps = 11/231 (4%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A V LS + ++ N A + +V + Sbjct: 788 KAGNMVPLSAFVEAKWTQGPAQLTRYNGYPAIAISGEAAPGHSTGEAMNEIQRLVSQLPA 847 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + T + + L+ + ++ +A + W + + L Sbjct: 848 GLGQEWTGLSLQERLSGAQAPLLLGLSLLIVFLCLA-----ALYESWSIPTSVLLVVPLG 902 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + + +L G+ ++ ++T+IG S + +++ + + LY K Sbjct: 903 VLGAVVAVSLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKD---LYDQGEDLISATLK 959 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASS 811 + L + TS+A + V+P+A+ G+ S + G++ A + Sbjct: 960 AARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLA 1010 >gi|194335298|ref|YP_002017092.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pelodictyon phaeoclathratiforme BU-1] gi|194307775|gb|ACF42475.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pelodictyon phaeoclathratiforme BU-1] Length = 1053 Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats. Identities = 74/689 (10%), Positives = 188/689 (27%), Gaps = 47/689 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I G++ ++++P I+ Sbjct: 8 RPVFAWVISICIMLGGIIAI-----NTLPVEQYPRIAAPT-IN--------VSATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + V + ++ + + N IT++F + +V LQ Sbjct: 54 AEAVENSVTQVIEQALTGIDHLRYFSAGSDSNGNVTITVTFEPEANPDIAQVQVQNKLQS 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + S L ++ + T +++ D + I + +D + Sbjct: 114 IMSNLPQQVQQQGIKVTKGDTGFLMVVGVYSDDPRIDEYAMNDFINSKLLDPLSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP R+ TT ++ N G Sbjct: 174 NIQVFG-QPYSMRIWLDPHRMASFNLTTTEVQAAITAQNADVSAGQLGGTPSVPGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + + + Sbjct: 233 TITAQSRL-------------KSVGDFEKIMLKVNSDGSQIRLRDVARVELGVQNYDMTT 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L+ P + S Sbjct: 280 RFNGKPAAGMAITLATGANALNTATLVKAKMSALKPLLPPGVQIVYPFDTTPFVKTSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T + LV +V+F+ + + LV ++ + ++ T ++S+ G ++ S+ +V Sbjct: 340 VVHTLIVAVILVFLVMFLFLQNFRATLVPTIAVPVVLLGTFGVMSMFGFSINTLSMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479 L IGL VD I+V E + + S + + S I + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERIMEEERLSPLEATRKSMKQISSALIGIALVLSAVFVPMAFF 459 Query: 480 FG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------------KKMKSI 523 G G R F+IT+ ++L+S+ A+ + A+ +++ + Sbjct: 460 KGSTGTIYRQFSITIVSAMLLSVLVALILTPALCASLLKPVRADGHLYGAGPLGRFFAWF 519 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + R + + ++ + I L + +G + + + Sbjct: 520 NGMFNHNRERYVNGARVMTERVKRSLLAFMLIVVLLGIVLTRIPTSFLPDEDQGFLFVQL 579 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 +++ ++ ++ + E F V G ++ Sbjct: 580 STPSGATKERTLESVKRMERYLLNQEKESIESIFSVTGFSFAGQGQNSAMGFVQLRDWSK 639 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + + I Sbjct: 640 RKNKGQDVASIAGRTMGALSSVKDAMIFA 668 Score = 84.4 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 91/234 (38%), Gaps = 12/234 (5%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V +Q D++ + + +++ +++ + ++P Sbjct: 264 DVARVELGVQNYDMTTRFNGKPAAGMAITLATGANALNTATLVKAKMSALKPLLPPGVQI 323 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711 + I + +I++ I + + +++ + + L + + + T G Sbjct: 324 VYPFDTTPFVKTSIEGVVHTLIVAVILVFLVMFLFLQNFRATLVPTIAVPVVLLGTFGVM 383 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINET 768 ++FG N ++ A++ IG V+D +VV +R+ + +L S + KS+ + Sbjct: 384 SMFGFSINTLSMFAMVLAIGLLVDDAIVVVENVERIMEEERL-----SPLEATRKSMKQI 438 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + ++ +PMA + GS F+I + ++++ ++ + + Sbjct: 439 SSALIGIALVLSAVFVPMAFFKGSTGTIYRQFSITIVSAMLLSVLVALILTPAL 492 Score = 70.9 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 91/271 (33%), Gaps = 9/271 (3%) Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623 Y ++ V + + + G + F+G + ++ Sbjct: 774 FMQGDAPYRMNPGDVNIWHVRNSSGDMVPFSSFSSGRWSFGSPKLERFNGISSVNIQGAP 833 Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683 PG S + + ++ + + ++ + + Sbjct: 834 APGVSSGDAMAIMANLAEKLPEGFGVEWTGLSYEERAAGQQTLLLYTLSLLFVFLCLA-- 891 Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 + W + + + L + T+ L G+ ++ +LT +G + + +++ + Sbjct: 892 -ALYESWSVPIAVMLVVPLGVLGTVLATFLSGLSNDVFFKVGLLTTVGLTAKNAILIVEF 950 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + LY + +S ++ + + ++ L + TSMA + V P+A G + + I Sbjct: 951 AK---TLYESGMSLQEAVLSAASQRLRPIIMTSMAFILGVTPLAFSSGAGSASQHAIGIG 1007 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + G++ +IF + + A+ Sbjct: 1008 VIGGMLSGTVLTIFFVPLFFILVQSRFARKR 1038 >gi|317491101|ref|ZP_07949537.1| hydrophobe/amphiphile efflux-1 family RND transporter [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920648|gb|EFV41971.1| hydrophobe/amphiphile efflux-1 family RND transporter [Enterobacteriaceae bacterium 9_2_54FAA] Length = 1040 Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats. Identities = 75/682 (10%), Positives = 178/682 (26%), Gaps = 50/682 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L ++ G L L + + ++P+ P + + Sbjct: 8 RPIFAWVLAIILMLAGGLAIL-----RLPVAQYPTIAPPA-------------IAITATY 49 Query: 63 DDFVNGFLQMYSDEL-RSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 +Q ++ + + S ITL+F + +V Sbjct: 50 PGADAQTVQDTVTQIVEQNMNGIDNLMYMSSTSDSAGGVTITLTFNSGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ D + S + D I S Sbjct: 110 KLQLAMPLLPQEVQQQGISVEKSSSSFLLVAGFISDNKNLTQDDISDYVASNIKDPISRS 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + +L + T + + N+ G + Sbjct: 170 NGVGDVQLFGAQ-YAMRIWLNSDQLNKYQLTPIDVINQLKIQNDQIAAGQLGGTPSVHNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + I Sbjct: 229 QLNASIIAQTRL-------------KDPEQFGQVLLKVNQDGSQVRLKDVARIELGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T A L+ + Sbjct: 276 NIVAKINGQPAAGLGIKLATGANALDTAAAIKAKLAELQPYFPQGMRVVYPYDTTPFVQI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIHEVIKTLLEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLSAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEHLSPKEATKKSMEQIQGALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +K + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPVSAEGHGEKKG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 F ++ + L + + G L + Sbjct: 511 FFGWFNRTFEKSAHHYTDSVGGILRSTGRYLIIYV----LIVIGMGVLFLRLPTSFLPEE 566 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 + ++ ++ QY A + V ++ Sbjct: 567 DQGVFMTMVQLPAGATQLRTQQVLDQVTQYYLTKEHANVESVFTVNGFSFSGQGQNSGLA 626 Query: 654 TEIVGPKISRELIRKGIVGVII 675 + P R G+ ++ Sbjct: 627 FISLKPWDQRSGKENGVTAIVG 648 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 92/273 (33%), Gaps = 6/273 (2%) Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610 S+ + ++ L F + V L V + +I + Sbjct: 222 TPSVHNQQLNASIIAQTRLKDPEQFGQVLLKVNQDGSQVRLKDVARIELGGENYNIVAKI 281 Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670 L +++ ++ ++ P + I + I Sbjct: 282 NGQPAAGLGIKLATGANALDTAAAIKAKLAELQPYFPQGMRVVYPYDTTPFVQISIHEVI 341 Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 ++ + I + + +++ + L + + + T + FG N + ++ Sbjct: 342 KTLLEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLSAFGYSINTLTMFGMVLA 401 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 IG V+D +VV + + + +S ++ KS+ + G V +M +PMA + Sbjct: 402 IGLLVDDAIVVVENV--ERVMAEEHLSPKEATKKSMEQIQGALVGIAMVLSAVFIPMAFF 459 Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 GGS F+I + + ++ ++ + + Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 62.8 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 69/193 (35%), Gaps = 7/193 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G+ + ++ + L + G L + IS + + + + Sbjct: 828 GEPTLGKSTGDAMQMMEQLVAKLPAGIGYDWTGMSYQERLSGNQAPALYAISLVVVFLCL 887 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L A+ G+ ++ +LT IG S + +++ + Sbjct: 888 AALYESWSIPFSVMLVVPLGVVGALLAAAIRGMNNDVYFQVGLLTTIGLSAKNAILIVEF 947 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + M+ D ++ L + TS+A + VLP+ + G + Sbjct: 948 AKDLMEKEGKG--LIDATLDAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTG 1005 Query: 801 MAFGIVVAASSSI 813 + G++ A +I Sbjct: 1006 VMGGMLTATLLAI 1018 >gi|83747153|ref|ZP_00944196.1| Acriflavin resistance protein (acrB) [Ralstonia solanacearum UW551] gi|83726128|gb|EAP73263.1| Acriflavin resistance protein (acrB) [Ralstonia solanacearum UW551] Length = 1049 Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats. Identities = 73/686 (10%), Positives = 182/686 (26%), Gaps = 49/686 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I G + Q + ++P+ P +++ Sbjct: 8 RPVFAWVLALFIIVAGAISI-----TQLPIAQYPTIAPP-------------SILITATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN--KITLSFADSRFKENIADKVT 116 L + + + IT++F V Sbjct: 50 PGASAKTLDDAVTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 L+ V ++L + + + ++ + + I R +++I Sbjct: 110 NRLKRVEARLPSSVTQQGVQVDKTRSNFLLFATLISKDGKMDPVALGDYISRNVLNEIKR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 Q + + DP++L T + N G Sbjct: 170 VPGVGQAVLFGT-ERAMRIWVDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSD 228 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + V + G T + + + + + Sbjct: 229 QP----IAATVVVEGQ---------MTTTEQFGNIVLVSKPDGSQVRVKDVARLELGGQT 275 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + I+ + T + L + Sbjct: 276 YATSARINGQPISAIGVQLSPTGNALGTAKAVKAKLDELSKYFPAGVEYKIPYDTSKFVQ 335 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+ + + ++ L+ + ++++ A ++ LG ++ + + Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLVFLQNIRYTLIPSIVVPISLLGAFATMNALGFSINVLT 395 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IG+ VD I+V E + + + + I + + + Sbjct: 396 MFGLVLAIGILVDDAIVVVENVERIMSQEGLPPREATRKAMGQITGAIIGITLVLMAVFI 455 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDI 525 + FF G R F+++M SI S A+++ A+ + ++K Sbjct: 456 PMAFFSGSVGAIYRQFSLSMVASIFFSALMALTLTPALCSTLLKPIEKGSHHEKKGFFGW 515 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 ++ + + I + ++ L + Sbjct: 516 FNRMFTSTTNHYQSLVERVLKKTFRYMVIYGVLIGAVVVLFMRLPSSFLPNEDQGYIITN 575 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 + + L+ ++ + +Q+ +N + + + ++ K ++ Sbjct: 576 IQLPPAASANRTLDVIKQVERYYQHEKAVENIVAVQGFSFSGNGPNAALVFTTLKDWSQR 635 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIV 671 T IR IV Sbjct: 636 GADQTADAVAGRAFGALFGGIRDAIV 661 Score = 78.2 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 87/250 (34%), Gaps = 6/250 (2%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 F + + V + V Q S + + + G+++ + Sbjct: 246 QFGNIVLVSKPDGSQVRVKDVARLELGGQTYATSARINGQPISAIGVQLSPTGNALGTAK 305 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692 ++ ++++ P K + I + + + + + + + + + + Sbjct: 306 AVKAKLDELSKYFPAGVEYKIPYDTSKFVQISIEEVVKTLFEAMALVFLVMLVFLQNIRY 365 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L + + + G N+ + ++ IG V+D +VV + + + Sbjct: 366 TLIPSIVVPISLLGAFATMNALGFSINVLTMFGLVLAIGILVDDAIVVVENV--ERIMSQ 423 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809 + R+ K++ + G + ++ +PMA + GSV F++ M I +A Sbjct: 424 EGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVASIFFSA 483 Query: 810 SSSIFIAAPI 819 ++ + + Sbjct: 484 LMALTLTPAL 493 Score = 54.7 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 27/258 (10%), Positives = 81/258 (31%), Gaps = 9/258 (3%) Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 F + + + + V S Q Sbjct: 759 FPNYGRQQRVIVQADRINRMQPEDIMNLFVRNTQGSMVPMSAFAKGHWIVGPVQLVRYNG 818 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675 +R+ + ++ +++ +++ + T + S + + Sbjct: 819 YPSIRISGDAATGASTGEAMDEMERLASKLPAGIGFEWTGQSLQEKSSGSQAPALYAL-- 876 Query: 676 SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 S +A+ + + ++ W I + L + L L + ++ ++ ++G S Sbjct: 877 SLLAVFLVLAALYESWSIPAAVILVVPLGVLGALLGVTLRVMPDDVYFKVGLIAVVGLSA 936 Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 + +++ + + L + ++++ + TS A + VLP+A+ G+ Sbjct: 937 KNAILIIEFAKD---LQAQGKGLIEATLEAVHLRFRPIIMTSFAFILGVLPLAIATGASS 993 Query: 795 ---GSFAIPMAFGIVVAA 809 + + G++ A Sbjct: 994 ASQRAIGTGVMGGMIAAT 1011 >gi|153001801|ref|YP_001367482.1| preprotein translocase subunit SecD [Shewanella baltica OS185] gi|151366419|gb|ABS09419.1| protein-export membrane protein SecD [Shewanella baltica OS185] Length = 604 Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats. Identities = 165/527 (31%), Positives = 275/527 (52%), Gaps = 34/527 (6%) Query: 15 CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71 + ++ P L S PS + I LGLDLRGG +L+VD D + Sbjct: 94 TLVSSMVTEPKELTLSFASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGE 153 Query: 72 MYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130 D LR F++++ I S+ Q N++ L+ D+ + + + Sbjct: 154 ALVDSLRQFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQ------- 206 Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190 L T + I LSQ ++ + ++Q+++++R RI+++GI+E+ +QR G HRI Sbjct: 207 ----LSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGDHRIR 262 Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250 I+LPG QDP+ + ++G TA ++F +V L D G V + Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLNDKSGKPIYVSRTPVLG 317 Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR--------- 301 G H+ A A+ V+I+ D +G ++ E +R NIGKP+A Sbjct: 318 GDHIVDARASLGEMGM-AEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDELGKAK 376 Query: 302 ---VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 + + Q+ + +I+G T + A LA +LRAGS+ + IVEER +G LG+ Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417 ++I G A+ G+ + +LFM + Y + G VA+ ++ N+++ LL+L+ A LTLP I Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 AG+VL +G+AVD+N+L+ ERI+++ ++ +S ++D GF A+STIFD+N T +I VVL Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556 Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 + G G ++GFA+T+GL +L SMFT I RA++ + + + Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603 Score = 120 bits (301), Expect = 8e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 90/260 (34%), Gaps = 5/260 (1%) Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631 G + + S + + ++ L G Q Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDELGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404 Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691 + + + TI +GP + E I G + + L+++ + ++ Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463 Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 A LI ++ G AL G L +A ++ +G +V+ V++++R++ +K Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 SF ID + + I+ + + G I FA+ + G++ + Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580 Query: 811 SSIFIAAPILLFIYDWRAKN 830 + IF + ++ +Y A Sbjct: 581 TGIFASRALINLVYGRDASR 600 >gi|17973460|gb|AAL32126.1| inner membrane RND family protein AcrB [Proteus mirabilis] Length = 1052 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 71/692 (10%), Positives = 183/692 (26%), Gaps = 43/692 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ + GLL + + + ++P+ P V + Sbjct: 8 RPIFAWVIAIITMLAGLLALI-----KLPVAQYPTIAPPAI---------SISAVYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + ITL+F + +V LQ Sbjct: 54 ATTVQNTVTQVIEQNMNGIDNMVYMSSTSDSAGMMNITLTFEAGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ + + + D + Sbjct: 114 AMPLLPQEVQQQGISVDKSSSSFLMVAGFISGDGSMSQDDIADYVGATIKDPLSRVTGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP +L + TT + NN G Sbjct: 174 ETQLFGTQ-YAMRIWLDPDKLVKYNMTTLDVINAIKSQNNQVAAGQLGGTPPVPGQRLNV 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + + + Sbjct: 233 SIIAQTRL-------------NTPEQFADILMKVNQDGSQVKLKDLGIVEMGAENYSTIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T A + + S Sbjct: 280 RFNGLPAAGIGIKLATGANALDTATAVRAALADMEPFFPSGLEVVYPYDTTPFVKISIFE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ +V Sbjct: 340 VVKTLVEAIMLVFVVIYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F++T+ ++++S+F A+ + A+ + ++ + Sbjct: 460 GGSTGAIYRQFSVTIVSAMVLSVFVALILTPALCATLLKPIPKGSHGVQTGFFGWFNRVF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D ++ + + +L + +I + + +G + V Sbjct: 520 EKSSHHYTDSVSRTLRGTGRYLLIYVLLVAAMAIMFVRLPASFLPEEDQGVLLTVVQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L + + + + F V G ++ Sbjct: 580 GSTQEQTQDVLTQVNDYFNTKEKDVVKSVFTVSGFGFGGQGQNMGLAFVVLNDWDERKSD 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 + + ++ + I AI Sbjct: 640 QDKVPAIVGRANQALSQIKEAFVYSFNIPAIV 671 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 79/211 (37%), Gaps = 7/211 (3%) Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 ++L T V + + P + + + ++ + + Sbjct: 291 IKLATGANALDTATAVRAALADMEPFFPSGLEVVYPYDTTPFVKISIFE-VVKTLVEAIM 349 Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737 + + I++ + + L + + + T + FG N + A++ IG V+D Sbjct: 350 LVFVVIYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFAMVLAIGLLVDDA 409 Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794 +VV + + + +S ++ KS+ + G V ++ +PMA +GGS Sbjct: 410 IVVVENV--ERVMQEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFFGGSTGAIY 467 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F++ + +V++ ++ + + + Sbjct: 468 RQFSVTIVSAMVLSVFVALILTPALCATLLK 498 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 82/244 (33%), Gaps = 8/244 (3%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S + ++ + G + ++G ++ PG S ++ Sbjct: 801 SSFIDTSKDPWLYGSPRLERYNGLPAVQIQGSATPGQSSGDAMLMMEQLASKLPSGIGYE 860 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + + +I+ + + + W + + L + L F Sbjct: 861 WTGMSYQERLSGNQAPALYTISLIVVFLCLA---ALYESWSVPFSVMLVVPLGVIGALAF 917 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+E ++ +LT IG S + +++ + + M+ + S+ L Sbjct: 918 TTLRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LVEATLDSVRMRLR 975 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + TS+A + V+P+ + G S + G++ A S +I+ + I Sbjct: 976 PILMTSLAFMLGVIPLVLSNGAGSGAQNSVGTGVFGGMIAATSLAIYFVPIFFVVIRRRF 1035 Query: 828 AKNA 831 AK Sbjct: 1036 AKKN 1039 >gi|134296813|ref|YP_001120548.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia vietnamiensis G4] gi|134139970|gb|ABO55713.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia vietnamiensis G4] Length = 1066 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 71/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+ + ++P+ P + + + Sbjct: 8 RPIFAWVIAIILMLAGVAAIF-----SLPIAQYPTIAPP-------------SIQITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S ITL+FA + +V Sbjct: 50 PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L ++ L T +++ N + + + + D I Sbjct: 110 KLSLATPVLPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMSKYDLANFVASHVKDPISRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP+RL T +S N G G + Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPNRLTNYGLTPVDVSSAITAQNVQIAGGQIGGTPAKPGT 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + + + + + + IG Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + L + Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + ++ ++ + ++ T A++SL+G ++ S+ Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSLVGFSINTLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F++T+ ++++S+ A+ + A+ I +K I Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F +R S L + Sbjct: 511 FFGWFNRTFNNSRDKYHVGVHHVIKRSGRWLIIY 544 Score = 79.3 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + L +++A + + ++ Sbjct: 258 SQVRLKDVAQIGLGGENYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + + I + + ++ + + + +++ + + + + + Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T +L G N ++ ++ IG V+D +VV + + + +S ++ K++ Sbjct: 378 GTFAIMSLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 80/219 (36%), Gaps = 8/219 (3%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + ++G ++ Q PG S Q K + + + + Sbjct: 816 ERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGSQAPVL 875 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + +++ + + + W I + L + L L G+E ++ +LT Sbjct: 876 YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 +G S + +++ + R+ T + + ++ L + TS+A + V+P+A+ Sbjct: 933 TVGLSAKNAILIVEFARE--LQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990 Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G + + + G++ A +IF+ + I Sbjct: 991 SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029 Score = 58.5 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 61/521 (11%), Positives = 134/521 (25%), Gaps = 36/521 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I +I +GLL + P + G + Sbjct: 536 RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + L+ D + S G Q + + D +++ KV + Sbjct: 590 LANISDYLLKDEKDIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSQRQHANQKVQALIGR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + + ++ + + ++ +A ++ R +G++ Sbjct: 650 MFGRYGSYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKDP 709 Query: 182 QRLGSH----RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 G Q + D + L T + + Sbjct: 710 TLQGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW----------------- 752 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + ++ G P P + Sbjct: 753 -ASKYVNNFLDTDGRIKKVYVQADAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTYG 811 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 V I A TA A + + + + + Sbjct: 812 SPKLERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGS- 870 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 AI +V + L + + L VI L +L G + Sbjct: 871 ---QAPVLYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQ 927 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G++ +GL+ + IL+ E RE + + + I +++ ++ + Sbjct: 928 VGLLTTVGLSAKNAILIVEFARELQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVMP 987 Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 L G + + ++ + F AI ++ + I Sbjct: 988 LAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028 >gi|134292295|ref|YP_001116031.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia vietnamiensis G4] gi|134135452|gb|ABO56566.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia vietnamiensis G4] Length = 1066 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 67/548 (12%), Positives = 154/548 (28%), Gaps = 31/548 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I G++ + +P +P + I Sbjct: 10 RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + +E + ++ N IT++F + V + Sbjct: 56 PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 +L D ++ + T ++ + D++ + Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 Q + DP ++ Q + + N + G Q Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQL 235 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + + IG + Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDIARIGLDASEYGLRS 282 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L + + + A L+ + S Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV+IV+ + + + ++ ++ ++++ T +LL G ++ S+ G+V Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGYSINALSLFGMV 402 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480 L IG+ VD I+V E + + + I +T + V L F Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462 Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G + FA+T+ +S +IS F ++++ A+ +++ K + + L Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRALGGFFR 522 Query: 539 AIQFMRAR 546 + R Sbjct: 523 GFNKVFHR 530 Score = 56.2 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L I + + I L L + N+ ++ L+G S + +++ + R+ Sbjct: 902 SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L + + ++ L + TS+A + V+P+ G + + + + FG+ Sbjct: 960 -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018 Query: 806 VVAASSSIFIAAPILLFIY 824 + + + + + Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037 Score = 51.6 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 90/254 (35%), Gaps = 14/254 (5%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + V ++ +R + V + ++ + V+K Sbjct: 252 IVVKTTPDGGVTHLRDIARIGLDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695 + E+ + + +R I V+ + + A+ + + W ++ Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 + + + I T FG N ++ ++ IG V+D +VV + + +N+ + + Sbjct: 371 PLIAVPVSIVGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ESGM 427 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811 + R K++ E G + ++V + G FA+ +A V++A + Sbjct: 428 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486 Query: 812 SIFIAAPILLFIYD 825 S+ ++ + + Sbjct: 487 SLTLSPALSAILLK 500 >gi|256018820|ref|ZP_05432685.1| acriflavine resistance protein [Shigella sp. D9] gi|332279901|ref|ZP_08392314.1| multidrug efflux system protein [Shigella sp. D9] gi|332102253|gb|EGJ05599.1| multidrug efflux system protein [Shigella sp. D9] Length = 1034 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNIKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILNPALCATLLKPTSAEHHENKGGFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERNSDEN 641 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + G + L V ++ V + +E +G+ + + Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291 Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + G + T + ++ ++ P + I + + + + + + Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 + +++ + L + + + T A FG N + ++ IG V+D +V Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796 V + + + + ++ +KS+++ G V +M +PMA +GGS Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F+I + + ++ ++ + + + Sbjct: 470 FSITIVSAMALSVLVALILNPALCATLLK 498 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|91203068|emb|CAJ72707.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 1158 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 75/272 (27%), Positives = 131/272 (48%), Gaps = 11/272 (4%) Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 L+ ++ G + ++P+ + L+S + +N +K Sbjct: 866 IINKFKDNLYEEKIDVAFQEIGDYLFNMTLSKPLRKETIEKTLDSAGYTGLLTENLAMDK 925 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675 + Q V + + + ++ +G ++ E+ + I+GV Sbjct: 926 EYQTVA----LSFNEQQNVGAAKEAIQKAFIVPNPLKRVVSIGSTVADEMKSRAILGVFF 981 Query: 676 SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFA----LFG-IEFNLTAVAAVLTL 729 + A + Y+W RF + F AI +I DI TLG A LFG ++F+ + VAA L + Sbjct: 982 ACAATIFYVWFRFGDFRFGSAAIIAVIHDILITLGVVAVADYLFGNMKFDSSMVAAFLAV 1041 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 +GYS+ND ++V+DR+R+NM+ ++ LI++SI++TL R++ TS + + Sbjct: 1042 VGYSLNDTIIVFDRIRENMEGRGKILN-AQLINESISQTLSRTILTSATTIGVLFSLFFL 1100 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 GG+ I FA M GI+V SSIFIA+P+LL Sbjct: 1101 GGAEIHGFAFVMLTGIIVGTYSSIFIASPLLL 1132 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 181/679 (26%), Positives = 294/679 (43%), Gaps = 82/679 (12%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 +N W + L ++ IG +I P + +V E D Sbjct: 3 KNLRWKIPLIVIVIAIGFMILYPPAEKVLKRE----------------------MVKEAD 40 Query: 62 EDDFVNGFLQMYSD-------ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114 + ++ +R + E I + I K Sbjct: 41 GKVIESKIVEKAWTHFLVTNPIIRETIIGEEI------------------GTDGKKITTK 82 Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174 + KL +D + + + + ++ +E++++RID Sbjct: 83 TVEYFTKGKIKLGLDL--------KGGSELLYTVRVDEREDRPGITKEIIEVLKKRIDPQ 134 Query: 175 GISESTIQRLGSHRILIQLPGEQ--DPSRLRQLLGTTAKMSFHKVLPNNSKK-------- 224 G+ E IQ G RILIQ+PG + L+ + K+ F +S + Sbjct: 135 GVMEYRIQEQGHRRILIQVPGATRSETESLKNRITKLGKLEFRLAASTDSVEYKDAMEGK 194 Query: 225 -------GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277 ++ + +G +LV + EI+G HL+ A+ K +PVV FD Sbjct: 195 SVPGYYKHWLRKRKGEEGEEGKWFLVRNTTEITGEHLSRIYADT--KGIEPVVGFEFDAA 252 Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337 G +F ++T NIGKPLA++LDG + +AP I GK I G+FT L A +RA Sbjct: 253 GKSKFGQITERNIGKPLAIILDGILYSAPTIRD-RIPGKGIIEGSFTQNEVNELIATMRA 311 Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397 GSLP L + E VG LG DSI KG A + G + +VLF+ + Y G VA+F+ LN Sbjct: 312 GSLPADLELEMETMVGPSLGRDSINKGLTAGIIGGIFVVLFIGIYYLGIGWVANFANALN 371 Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457 V L + +++LL ATLTLP IAG+VL IG+ VD+N+L+ ERIREE K + + ++ G+ Sbjct: 372 VFLIIGIMALLNATLTLPGIAGLVLMIGMGVDANVLIYERIREERAKGKPIRAAVKAGYQ 431 Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517 +A+S IFDSNIT +I V+L G G V+GFA + + ++I++FTAI + R + ++ Sbjct: 432 KAFSAIFDSNITTVITGVILASVGTGPVKGFAWILIIGLIINLFTAIFVTRTIYELLMDL 491 Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFK 576 K +KS + + I+F+ R +S + + Y IDF Sbjct: 492 KWVKSFSM------LRLIGVPDIRFLSIRHTLFIVSGVCVLGGMTFFVIRGDKKYDIDFT 545 Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636 GG + + +R++L+ G+ Q+ +N + + + E Sbjct: 546 GGTLVHLHLKNETTPGFIRTSLKDAGYGEAEVQSIWSGENLTQFVSKADEFGIRIKEINE 605 Query: 637 MVKKKITEIVPLSTIQNTE 655 +K+ + TE Sbjct: 606 EKEKQKIATDISNVFGQTE 624 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 78/176 (44%), Gaps = 4/176 (2%) Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + +VGP + R+ I KG+ II I ++++I I + A L++ +G Sbjct: 321 EMETMVGPSLGRDSINKGLTAGIIGGIFVVLFIGIYY-LGIGWVANFANALNVFLIIGIM 379 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 AL L +A ++ +IG V+ V++Y+R+R+ R + + Sbjct: 380 ALLNATLTLPGIAGLVLMIGMGVDANVLIYERIREERA---KGKPIRAAVKAGYQKAFSA 436 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 +++ I+ + +A G + FA + G+++ ++IF+ I + D + Sbjct: 437 IFDSNITTVITGVILASVGTGPVKGFAWILIIGLIINLFTAIFVTRTIYELLMDLK 492 >gi|310778924|ref|YP_003967257.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Ilyobacter polytropus DSM 2926] gi|309748247|gb|ADO82909.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Ilyobacter polytropus DSM 2926] Length = 1052 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 78/680 (11%), Positives = 189/680 (27%), Gaps = 45/680 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + ++ +I GL+ + + ++P P + + Sbjct: 8 KRPIFAGVISIVIVIAGLVT-----MKSLPVAQYPEIAPPT-------------IQVSAV 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 + + + E + S + ++++F + + V Sbjct: 50 YPGANAETISRTVAQPIEGEVNGVENMIYMSSNSSNSGQYSLSVTFEVGTDMDVAQNLVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + S L + ++ + T ++ + + + + S D++ Sbjct: 110 NRVSQALSSLPEEVQRQGVTTEKRSSNILLFASLTSENSMHDDLFLSNYATLNIKDELSR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + + P +L+ T+ + N G Sbjct: 170 IKGVGGITVFGAGDYSMRIWLYPDKLKARGLTSTDVVNAVREQNTQVAAGQIGQEPSPVD 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ V + +++ + I + Sbjct: 230 QDFQFTVNMRGKLNSTE-------------EFENIIVKTTPDGGMIRVRDIARVELGSQS 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 L + + + E L + Sbjct: 277 YNISNQLNGQPSAAIAVFLQPEANALKVAEGVKAKLDELSQKFPQGMKANIPFDTTTFVK 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S + T I LV + + + + + L+ +I +++I T A+++ LG ++ S Sbjct: 337 SSINEVIETLFISVILVFLTILLFLEDWRATLIPTIAIPVSLIGTFAVMAALGVSINTLS 396 Query: 417 IAGIVLGIGLAVDSNILVNER-IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IG+ VD I+V E +R + N + + + + L + Sbjct: 397 LFGLVLAIGIVVDDAIIVVENAVRNIDENNLEPRDAAIKAMEEITGPVIATTLVLLSVFI 456 Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 F G G R FA+T+ + + S A+++ A+ +R K F Sbjct: 457 PTAFLGGITGQLYRQFALTIATATIFSSINALTLSPALCAIFLRPKNPNRKHNIFTRAFN 516 Query: 533 LIPDCIAIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + R R + I + L G K + ++ + Sbjct: 517 SAFSKTQKGYARILTSVVRRGAIMILAFIILTLGVFWRYDSLPKGFVPKEDLGYAMINVQ 576 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 D + + + I + +G +N + Y D A + Sbjct: 577 LPDAASLTRTKAVVDIITKRLEKVEGLENRIAISGYSIMDGAAASNNAAFWLVFKPWEER 636 Query: 648 LSTIQNTEIVGPKISRELIR 667 + + + ++S+ + Sbjct: 637 KKAGLSMDKIMGEVSKSISD 656 Score = 84.7 bits (207), Expect = 7e-14, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 104/285 (36%), Gaps = 6/285 (2%) Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611 S + + LN +F+ I + + + Q +IS Q Sbjct: 225 PSPVDQDFQFTVNMRGKLNSTEEFENIIVKTTPDGGMIRVRDIARVELGSQSYNISNQLN 284 Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671 + +++ ++ ++++ P N + I + I Sbjct: 285 GQPSAAIAVFLQPEANALKVAEGVKAKLDELSQKFPQGMKANIPFDTTTFVKSSINEVIE 344 Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 + IS I + + I + + W L + + + T A G+ N ++ ++ I Sbjct: 345 TLFISVILVFLTILLFLEDWRATLIPTIAIPVSLIGTFAVMAALGVSINTLSLFGLVLAI 404 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 G V+D ++V + +N+ ++ RD K++ E G + T++ +P A G Sbjct: 405 GIVVDDAIIVVENAVRNIDE--NNLEPRDAAIKAMEEITGPVIATTLVLLSVFIPTAFLG 462 Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 G + FA+ +A + ++ +++ ++ + + N + Sbjct: 463 GITGQLYRQFALTIATATIFSSINALTLSPALCAIFLRPKNPNRK 507 Score = 67.4 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 9/169 (5%) Query: 669 GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725 G + I + +Y+ + W L + T+ L + T+ ++ ++ N+ Sbjct: 870 GNIVFIFGLAVLFVYLVLCAQYESWTLPLTIVLTVPLAVLGTVVALSVRQMDVNVYTQLG 929 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 ++ LI + +++ + ++ + +S + ++ + T+ + VLP Sbjct: 930 IVLLIAMTCKTAILISEFAKEES---NSGMSIVESALEASRLRFRPILMTAFTFILGVLP 986 Query: 786 MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + G S A G++ A IF + I K Sbjct: 987 LTYATGAGAESRRSLGTATAGGMLSATLLLIFFVPVFYIIIMGASEKLK 1035 >gi|222086877|ref|YP_002545411.1| multidrug-efflux system [Agrobacterium radiobacter K84] gi|221724325|gb|ACM27481.1| multidrug-efflux system [Agrobacterium radiobacter K84] Length = 1065 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 67/552 (12%), Positives = 155/552 (28%), Gaps = 39/552 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I GL+ L + +P +P +V+ Sbjct: 10 RPVFAGVLSVLIVVAGLI-----GLRLLPISEYPEVVPP-------------SIVVTAQY 51 Query: 63 DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + + + + + EG+ + + + +T++F + V Sbjct: 52 PGANPKVIAETVATPIEEQINGVEGMLYMNSQATSDGLMTLTVTFKLGTDPDKAQQLVQN 111 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 + +L + + + T +++ D++ Sbjct: 112 RVSQAEPRLPQNVRDLGITTVKSSPDLMMVVNLISPDNRYDITYLRNYATLNIKDRLARI 171 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E Q + DP + + + ++ N + G Sbjct: 172 EGVGQVRVFGSGDYSMRVWVDPQKSAERGLAASDIANAIRAQNIQAAAGIIGQSPSVPGI 231 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q V + ++ + I I A Sbjct: 232 DVQLNVNAQGRLT-------------TPEEFGNIIVKSGSNGEITRLRDVARIELGAADY 278 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 +L + + L+A + Sbjct: 279 SLRSLLDGKPAVAVPVFQAPGSNAITISDDVVKTMNELQAAMPDGVKYEIVYDTTQFVRS 338 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV+IV+ + + + ++ ++ +++I T A++ + G ++ S+ Sbjct: 339 SIDKVVHTLLEAIALVVIVVILFLQTWRASIIPLIAVPVSIIGTFAVMYVFGFSINALSL 398 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ VD I+V E + S + I + + V L Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIENGLSPRDATYRAMKEVSGPIIAIALVLVAVFVPL 458 Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534 F G R FA+T+ +S +IS F ++++ A+ +++ + + Sbjct: 459 AFISGLSGEFYRQFALTIAISTVISAFNSLTLSPALAALLLKDHHAPKDMLTRVMDAVFG 518 Query: 535 PDCIAIQFMRAR 546 + R Sbjct: 519 WFFRGFNKVFNR 530 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 80/188 (42%), Gaps = 9/188 (4%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 S + + ++ + + V + +T +++ + + + I +++++ Sbjct: 306 SDDVVKTMNELQAAMPDGVKYEIVYDTTQFVRSSIDKVVHTLLEAIALVVIVVILFLQ-- 363 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W ++ + + + I T +FG N ++ ++ IG V+D +VV + + +N Sbjct: 364 -TWRASIIPLIAVPVSIIGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERN 422 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804 + +S RD +++ E G + ++ +P+A G FA+ +A Sbjct: 423 I---ENGLSPRDATYRAMKEVSGPIIAIALVLVAVFVPLAFISGLSGEFYRQFALTIAIS 479 Query: 805 IVVAASSS 812 V++A +S Sbjct: 480 TVISAFNS 487 Score = 55.1 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 6/140 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L + + + + L L G + N+ ++ L+G S + +++ + R+ Sbjct: 902 SVTLPLAIVMIVPMGVLAALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L + +S L + TSMA + V+P+ G + + + + G+ Sbjct: 960 -LEFEGRTPIQAAIESSRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRAAMGVAVFAGM 1018 Query: 806 VVAASSSIFIAAPILLFIYD 825 + IF+ + I Sbjct: 1019 IGVTFFGIFMTPVFYVLIRR 1038 >gi|262371656|ref|ZP_06064935.1| protein-export membrane protein SecF [Acinetobacter junii SH205] gi|262311681|gb|EEY92766.1| protein-export membrane protein SecF [Acinetobacter junii SH205] Length = 322 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 92/309 (29%), Positives = 156/309 (50%), Gaps = 3/309 (0%) Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 M + ++ D I FM+ SIL +I SI + T GLN G+DF GG+ Sbjct: 1 MTDLTQQDSKQYGRPDDAKIIPFMKIAKPAAIFSILLTIVSIFFIATKGLNLGLDFTGGV 60 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 + + V + V L+ D Q + +VR+ Q + + E + Sbjct: 61 SAELNYAQAVQPAQVSQALDRAGFKDAVVQTLGSNTDLIVRMPVQE--DLNVADLSETIT 118 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699 K + + + + VG ++ EL + + ++ I MLIY+ IRF++ A+GA+ + Sbjct: 119 KAVQLPNNAAEVHKVDAVGGQVGNELYIRSAGALALAMILMLIYVTIRFEFKLAMGAVLS 178 Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759 L DI +G FALF +F+L+ +AA+L ++G+S+ND +VV DR+R+N + + R+ Sbjct: 179 LFHDIIIIIGTFALFQWQFDLSVLAAILAVMGFSLNDNIVVSDRIRENFRKI-RGATPRE 237 Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++D ++ ETL R+++TSM + VL M GG + F++ M G+ V SSI+I Sbjct: 238 IVDIALTETLRRTIHTSMTLLLVVLAMMFVGGDGLHLFSVAMFVGVFVGTYSSIYIGTAF 297 Query: 820 LLFIYDWRA 828 L+ R Sbjct: 298 ALWRGLNRQ 306 >gi|171464097|ref|YP_001798210.1| protein-export membrane protein SecD [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193635|gb|ACB44596.1| protein-export membrane protein SecD [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 619 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 156/501 (31%), Positives = 268/501 (53%), Gaps = 19/501 (3%) Query: 30 SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86 ++L P + + LGLDLRGG + +L+VD V + + ++R L+ + I Sbjct: 113 NLLSNTPGWLNAMNALPMPLGLDLRGGVYFLLQVDMKGAVQKKVTSLATDIRGQLRDKNI 172 Query: 87 GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146 + + + I+++F + E + + ++ +V Sbjct: 173 RHQGIERGADFISINFGSTADAEATRSVLMTAQPELIWQVKPTGLSPKVVGE-------- 224 Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206 + ++ +A++Q++ + +R++++ + E IQ+ G+ RI++QLPG QD +R + ++ Sbjct: 225 FKSTALKEIHDNAVKQNIITLNKRVNELAVKEPVIQQQGAERIVVQLPGVQDTARAKDII 284 Query: 207 GTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262 G TA + P + G+ R + + + V SG + A+A FD Sbjct: 285 GRTATLESRLADPLVTTIAIGETPPPGMDTFRFGENRLGVFKKSVIFSGDRITDASAGFD 344 Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQAIPSGKAQI 319 +P V+IS D G R EVTR+NIGKP+ ++L + + Q+ S K QI Sbjct: 345 QNQ-RPSVNISLDAAGGRVMQEVTRENIGKPMGMILFEKGKGEVLTIATFQSEFSSKFQI 403 Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379 +G T E+A LA +LRAGSL + I+EER +G LG+++I KG +++ G I + M Sbjct: 404 TGQPTTESANDLALLLRAGSLAAPMEIIEERTIGPSLGAENIEKGFKSLLIGFAAIAISM 463 Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439 + Y +G + ++ +N++L +++LS+L ATLTLP IA + L +G+A+DSN+L+NERIR Sbjct: 464 MAYYLLFGAFSVVALAVNLLLLISVLSMLQATLTLPGIAAMALALGMAIDSNVLINERIR 523 Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499 EE R + S ++ +GF +A++TI DSN+T LIA + L FG G ++GFA+ L IL S Sbjct: 524 EELRNSASPQAAIAVGFDKAWATILDSNVTTLIAGLALLAFGSGPIKGFAVVHCLGILTS 583 Query: 500 MFTAISIVRAMMIFIIRYKKM 520 MF+A+ R ++ K Sbjct: 584 MFSAVFFSRGLVNLWYGRHKK 604 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 48/309 (15%), Positives = 113/309 (36%), Gaps = 7/309 (2%) Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584 P + + G I + +N +D GG + + Sbjct: 307 TPPPGMDTFRFGENRLGVFKKSVIFSGDRITDASAGFDQNQRPSVNISLDAAGGRVMQEV 366 Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + + E + ++ F E + ++ QP A L + + Sbjct: 367 TRENIGKPMGMILFEKGKGEVLTIATFQSEFSSKFQITGQPTTESANDLALLLRAGSLAA 426 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 I +GP + E I KG ++I A+ I + + F ++ L +++ Sbjct: 427 P---MEIIEERTIGPSLGAENIEKGFKSLLIGFAAIAISMMAYY-LLFGAFSVVALAVNL 482 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 + ++ L +AA+ +G +++ V++ +R+R+ ++ S S + I Sbjct: 483 LLLISVLSMLQATLTLPGIAAMALALGMAIDSNVLINERIREELR---NSASPQAAIAVG 539 Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 ++ + +++ I+ L + +G I FA+ GI+ + S++F + ++ Y Sbjct: 540 FDKAWATILDSNVTTLIAGLALLAFGSGPIKGFAVVHCLGILTSMFSAVFFSRGLVNLWY 599 Query: 825 DWRAKNARI 833 K ++ Sbjct: 600 GRHKKIQKL 608 Score = 46.6 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 21/119 (17%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R W ++ ++ IG L +LPNF ++ + S P + Sbjct: 3 RYPLWKYLVIAVALLIGGLYSLPNFYGEAPAVQVSSTKP------------------TIK 44 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D ++ + + G+ + I + F ++ + D + L Sbjct: 45 VDFATQSRVEKILT--EANINNTGVFF-EVAGNVGSIKVRFDNTDIQLRARDLLQQKLN 100 >gi|290474644|ref|YP_003467524.1| multidrug efflux pump (RND family) [Xenorhabdus bovienii SS-2004] gi|289173957|emb|CBJ80744.1| multidrug efflux pump (RND family) [Xenorhabdus bovienii SS-2004] Length = 1049 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 70/685 (10%), Positives = 183/685 (26%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ + GLL + + ++++P+ P + V + Sbjct: 8 RPIFAWVIAIITMLSGLLAIM-----KLPVEQYPAIAPPSI---------SISAVYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + + ITL+F + + +V LQ Sbjct: 54 ATTVQNTVTQIIEQNMNGIDNLVYMASNSDSAGRMSITLTFEANTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ + + + + D + Sbjct: 114 AMPLLPREVQQQGISVDKTTNSFLMVAGFISEDGSMTQDDIADYVGASVKDPLSRVSGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + + DP +L TT + NN G Sbjct: 174 ETMLFGNQ-YAMRIWLDPDKLLNYKMTTQDVITAIKAQNNQVAAGQLGGTPPVPGQRLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + + Sbjct: 233 SIIAQTRL-------------NSPEEFSNILLRMNRDGSHIRLRDVSVVELGAESYSIIG 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T + A + + S Sbjct: 280 RFNGNSAAGIGIKLATGANALDTSKAVKKALAEMAPFFPHGLTVVYPYDTTPFVKISIFE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T A LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ +V Sbjct: 340 VVKTLAEAILLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + S + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLPPKEATRKSMGQIQSALVGIALVLSAVFVPMAFF 459 Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 G G R F+IT+ ++++S+ A+ + A+ + I+ + Sbjct: 460 GGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPVAKGSHGIQIGFFGWFNRLF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D + + + +L + + + +G + V Sbjct: 520 EKSTHHYTDSVGRMLRGTGRYLLIYVVLIAGMAFMFTRMPSSFLPEEDQGVLLAIVQLPP 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L+ + + + + F + G V +K Sbjct: 580 GSTQDQTQKVLDEINDYFHTKETEIVKSVFTINGFSFSGQGQNAGLVFVSLKDWDERKDD 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + ++ + Sbjct: 640 KDKVPAIVDRANAHFSQIKEGIVFA 664 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 85/240 (35%), Gaps = 6/240 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + L V + I + + +++ ++ ++ ++ Sbjct: 255 RDGSHIRLRDVSVVELGAESYSIIGRFNGNSAAGIGIKLATGANALDTSKAVKKALAEMA 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + + + + + + + +++ + + L + + Sbjct: 315 PFFPHGLTVVYPYDTTPFVKISIFEVVKTLAEAILLVFVVMYLFLQNFRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T A FG N + A++ IG V+D +VV + + + + ++ Sbjct: 375 VLLGTFAILAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATR 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+ + V ++ +PMA +GG+ F+I + +V++ ++ + + Sbjct: 433 KSMGQIQSALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492 Score = 67.8 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 74/201 (36%), Gaps = 7/201 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFA 693 + + L + + G L + +S I + + + ++ W Sbjct: 841 DAMVFMEQLASQLPSGIGYDWTGMSYQERLSGNQAPALYTLSLIVVFLCLAALYESWSIP 900 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L I L ++ G++ ++ +LT IG S + +++ + + ++ Sbjct: 901 FSVMLVVPLGIVGALLATSIRGLDNDVYFKVGLLTTIGLSAKNAILIVEFAKDLIEKEGK 960 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + V+P+ + G + + G++ A S Sbjct: 961 G--LIEATLDAVKMRLRPILMTSLAFMLGVMPLVLSNGAGSGAQNAVGTGVLGGMIAATS 1018 Query: 811 SSIFIAAPILLFIYDWRAKNA 831 +I+ + I +K + Sbjct: 1019 LAIYFVPVFFVVIKRRFSKKS 1039 >gi|262376683|ref|ZP_06069911.1| acridine efflux pump AdeY [Acinetobacter lwoffii SH145] gi|262308393|gb|EEY89528.1| acridine efflux pump AdeY [Acinetobacter lwoffii SH145] Length = 1058 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 61/554 (11%), Positives = 158/554 (28%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILTI-----SKMPIAQYPTIAPPT-------------VTISATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S + I+L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGMDGLRYISSNSAGNGSSSISLNFDQGVDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + A + + + + Sbjct: 110 KLQSATALLPEDVQRQGVRVTKSGASFLQVLAFYSPDSSLTADDIKDYVNSNIAEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP+++ L T + ++ N G Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKMASLQVTPSDIANAIRTQNAQVAVGQLGGAPAVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + + Sbjct: 229 VLNATVTAQSLL-------------QTPEQFSNIFLKNATSGAQVRLGDVARVELGADNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + LR ++ + Sbjct: 276 QFDSKFNGKPAGGVAIKLATGANALDTAQAVEERLKQLRPNYPQGMVDQLAFDTTPFIEL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIKSVVKTLIEAIILVFLVMFLFLQNWRATIIPTMAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMVEEHLDPVAATEKSMKQISGALIGITSVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A++ A+ +++ + N + F Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLVVALTFTPALCATLLKQHDPNKPESNGIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 + + ++ Sbjct: 516 RWFNSSFDKVSVKY 529 Score = 81.7 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 90/263 (34%), Gaps = 8/263 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 F + V L V + + +++ + Sbjct: 245 QFSNIFLKNATSGAQVRLGDVARVELGADNYQFDSKFNGKPAGGVAIKLATGANALDTAQ 304 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692 +E K++ P + I+ + +I + I + + +++ + W Sbjct: 305 AVEERLKQLRPNYPQGMVDQLAFDTTPFIELSIKSVVKTLIEAIILVFLVMFLFLQNWRA 364 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 + + + + T +FG N + A++ IG V+D +VV + + + Sbjct: 365 TIIPTMAVPVVVLGTFAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMVE 422 Query: 753 TSISFRDLIDKSINETLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVA 808 + +KS+ + G + TS+ + +PMA +GG VI F+I + +V++ Sbjct: 423 EHLDPVAATEKSMKQISGALIGITSVLS-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLS 481 Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831 ++ + + N Sbjct: 482 LVVALTFTPALCATLLKQHDPNK 504 Score = 62.8 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 63/170 (37%), Gaps = 14/170 (8%) Query: 674 IISAIAMLIYIWIRFK---WYFALGAITTL--ILDITKTLGFFALFG---IEFNLTAVAA 725 +S + + + + ++ F++ + L + + T G L + N+ A Sbjct: 884 ALSLLIVFLCLAALYESWSIPFSVLLVVPLGIVGALLLTFGGMVLLQNPNLSNNIYFQVA 943 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 ++ +IG S + +++ + ++ L + + L + T++A VLP Sbjct: 944 IIAVIGLSAKNAILIVEFAKE---LQEQGEELFEATLHAAKMRLRPIIMTTLAFGFGVLP 1000 Query: 786 MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 +A+ G S + G++ + IF ++I + Sbjct: 1001 LALASGAGAGSQHSVGYGVLGGVISSTLLGIFFIPVFYVWIRSVFKYKPK 1050 >gi|262173910|ref|ZP_06041587.1| protein-export membrane protein SecD [Vibrio mimicus MB-451] gi|261891268|gb|EEY37255.1| protein-export membrane protein SecD [Vibrio mimicus MB-451] Length = 612 Score = 194 bits (491), Expect = 6e-47, Method: Composition-based stats. Identities = 152/512 (29%), Positives = 261/512 (50%), Gaps = 25/512 (4%) Query: 25 NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84 + S+ ++ + + I LGLDLRGG +L VD D D ++ L+ E Sbjct: 113 TYSYVSVAPKWLDELGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAE 172 Query: 85 GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144 + S++ + N +F + + V +LQ + + + + Sbjct: 173 RLRGVSVQAVGND---AFDVKTQQPQALNHVRQYLQ--------ENYRGWDIRQGSDHLQ 221 Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204 + SQ N + + I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + Sbjct: 222 VQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKN 281 Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264 ++G TA ++F++ F L D +G ++ + +SG H+ A A D Sbjct: 282 VIGATASLAFYEAKS--PTDARSFDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNM 339 Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313 V G + V R+ + + + Q+ Sbjct: 340 GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSERVISVATIQSQL 399 Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373 + +I+G ++E A LA +LRAGSL + IVEER +GA LG ++I G A+ GL Sbjct: 400 GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLA 459 Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432 + + FM + Y + G VA+ ++ +N+ L L++LL A LTLP IAG+VL +G+AVD+N+ Sbjct: 460 MTLTFMALWYRRLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 519 Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492 L+ ERIR++ + ++ ++D GF A+STI D+NIT +I V+L+ G G ++GFA+T+ Sbjct: 520 LIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTL 579 Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 GL +L SMF+ + RA++ + + + Sbjct: 580 GLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611 Score = 123 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + + TI +G + E I G + + L ++ + + Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLAMTLTFMALWY 469 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L++++ LG AL G L +A ++ +G +V+ V++++R+R Sbjct: 470 R-RLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + +F ID + + ++ I+ + + G I FA+ + G++ Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + S +F + ++ ++ + Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608 >gi|317047202|ref|YP_004114850.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Pantoea sp. At-9b] gi|316948819|gb|ADU68294.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea sp. At-9b] Length = 1049 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 63/574 (10%), Positives = 155/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + ++++P+ P + ++ Sbjct: 8 RPIFAWVIAIIIMLAGALSII-----SLPIEQYPNVAPPA-------------VEIQASY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L + + + + S +TL+F + +V Sbjct: 50 PGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSDSSGTLTLTLTFQSGTDADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + + + ++++ D + S + D I + Sbjct: 110 KLQLAMPLLPQEVQSQGIQVKKSSSSFLMVAGFVSDDPNMTQNDISDYVASNIKDPISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T + N G Sbjct: 170 PGVGDTQVFGAQ-YAMRIWLDPHKLNNFQLTPVDVISALGTQNTQVAAGQLGGTPPVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + + + I Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGNILLKVNTDGSQVRLRDVAKIELGGESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T + A L+ + Sbjct: 276 DIIARYNGKPASGIGIKLATGANALDTADAVKTELAKLQPFFPSGLKVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A+++ G ++ ++ Sbjct: 336 SIFEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIIAACGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++ +S+ A+ + A+ +K ++ + Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPVEKGSHGKTTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F ++ V + L + Sbjct: 511 FFGWFNRLFDKSTHHYVDSVGHIVRSTGRYLVLY 544 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + DI + + + +++ ++ K+ Sbjct: 258 SQVRLRDVAKIELGGESYDIIARYNGKPASGIGIKLATGANALDTADAVKTELAKLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + + + + +++ + + L + + + Sbjct: 318 PSGLKVVYPYDTTPFVKISIFEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A G N + ++ IG V+D +VV + + + + ++ +S+ Sbjct: 378 GTFAIIAACGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +PMA +GGS F+I + + ++ ++ + + Sbjct: 436 EQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 62.8 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 7/183 (3%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693 + + L + G L + IS I + + + ++ W Sbjct: 838 DAMNLMEQLAAKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753 + + L + L F L G+ ++ V +LT IG S + +++ + + M+ Sbjct: 898 FSVMLVVPLGVVGALLFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810 + ++ L + TS+A + VLP+A+ G + + G+V A + Sbjct: 958 G--LVESTLEASRMRLRPILMTSLAFILGVLPLAISTGAGSGAQNAVGTGVMGGMVTATA 1015 Query: 811 SSI 813 +I Sbjct: 1016 LAI 1018 >gi|146305861|ref|YP_001186326.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas mendocina ymp] gi|145574062|gb|ABP83594.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pseudomonas mendocina ymp] Length = 1045 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 69/527 (13%), Positives = 154/527 (29%), Gaps = 40/527 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I GL + + ++P +P + + Sbjct: 9 RPVFATVISIVIVLAGLAA-----MRALPIAQYPEILPP-------------QVSVSAAY 50 Query: 63 DDFVNGFL-QMYSDELRSFLKKEGIGV----FSMRQIQNKITLSFADSRFKENIADKVTL 117 + + + + L + + S +T+ F + V Sbjct: 51 PGASSQVIAETVAAPLEQAINGVEDMIYQLSNSSSSGAMSLTVYFEVGTDPDQATINVNN 110 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q +KL + ++ + + + + I S + ID++ Sbjct: 111 KVQAALAKLPEEVRRQGVKVEKKSSDILQVITLYSPDDSRDPIFISNYALINVIDELKRL 170 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + P +L Q T + N+ FG + L++ Sbjct: 171 PGVGDASQFGSKDYSMRIWLRPDKLAQYNLTPTDVVNAIREQNSQFAAGSFGQQPLKEPQ 230 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y V + + + I + + Sbjct: 231 DFTYTVTTQGRFT-------------DPKEFENVILRTDATGASLLLKDVARVELGAQDY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L + + T E L + Sbjct: 278 SLVTTLNGQQNAAFGIYLQPGANALDTAEAVQRTMERLSKRFPEGIAYKIPYDTTKFVQV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ +I ++++ T A + +LG ++ L ++ Sbjct: 338 SIEEVIHTFFEALVLVVLVVFIFLQNWRATLIPVLAIPVSLVGTFAGMYMLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + + I + V Sbjct: 398 FGMVLAIGIVVDDAIVVIENVERVMRTQGLGPREASIKAMEEVTGPIIAIVLVLCAVFVP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 + F G G + FAIT+ +S++IS A+++ A+ +++ Sbjct: 458 VGFLGGLAGQMYKQFAITIAVSVVISGIVALTLSPALCALLLKPGHH 504 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 8/203 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + A R +E + K+ E + +T E+I +++ + + I++ Sbjct: 303 DTAEAVQRTMERLSKRFPEGIAYKIPYDTTKFVQVSIEEVIHTFFEALVLVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + + T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVLAIPVSLVGTFAGMYMLGFSINLLTLFGMVLAIGIVVDDAIVVIENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T + R+ K++ E G + + +P+ G G + FAI +A Sbjct: 419 -ERVMRTQGLGPREASIKAMEEVTGPIIAIVLVLCAVFVPVGFLGGLAGQMYKQFAITIA 477 Query: 803 FGIVVAASSSIFIAAPILLFIYD 825 +V++ ++ ++ + + Sbjct: 478 VSVVISGIVALTLSPALCALLLK 500 Score = 70.5 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 66/169 (39%), Gaps = 7/169 (4%) Query: 668 KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 G + I + + + ++ +W L +T + + + L GI+ ++ + Sbjct: 869 SGAQAFVFGLILVFLILAAQYERWTLPLAVVTAVPFAVFGAILAVWLRGIQNDVYFQVGL 928 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 +TLIG + + +++ + + L D ++ V TS+A + +P+ Sbjct: 929 VTLIGLAAKNAILIVEFA---VLLRAEGKGIFDSALEAAKLRFRPIVMTSLAFILGCVPL 985 Query: 787 AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 A+ G + S + G++ A + F+ L + + +R Sbjct: 986 AISSGAGSASRHSIGTGVIGGMLAATLLATFLIPMFYLLVETGAQRLSR 1034 Score = 47.4 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 62/530 (11%), Positives = 136/530 (25%), Gaps = 37/530 (6%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRIS-LGLDLRGGSHLVLEVDEDD 64 L ++ G++ + + P I+ L + E Sbjct: 532 LKRSLVGLLLFGGMIALIMLLFARVPGSLVPDEDQGYVINAYYLPPAASLNRT-EALSSA 590 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124 ++ + E + F +R + D + Sbjct: 591 VSQQLMEHPAVEDVVTFAGFDVLTFGVRSNAGVSFVPLKDWSERRTPELDARNLTHEFMG 650 Query: 125 KLNVDPKKNLLVTTTEKEISIVLS----QNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 + K L+++ I+ + + ++ I ++EQ E ++ + Sbjct: 651 -MGAAQKDGLVLSFNPPPITGMSTTGGFESYIQDRSGGSVEQLGEKVQAFVQAASQRPEL 709 Query: 181 IQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 + Q + D ++ R L + + + S F + Sbjct: 710 AGVQSTFSANVPQYYIDLDRTKTRALGVSVSDVFTAMQATFGSYYVNDFTLFGRTWQVSL 769 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 Q E V + + R Sbjct: 770 QSESE---------------FRRKPEDLGQVYVRSSTGDLVPLSTLLRVRRILGPDSYDR 814 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 V + + G + ++ I E G+ Sbjct: 815 FNVYPSAKVLGGPAPGYSSGQALAAMQAVADEVLGEDYSLGWIGSAYQELATQGS----- 869 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 G A V GL+L+ L + Y L ++ V + + L G + Sbjct: 870 ----GAQAFVFGLILVFLILAAQYERWTLPLAVVTAVPFAVFGAILAVWLRGIQNDVYFQ 925 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+V IGLA + IL+ E + + +F S + I +++ ++ V L Sbjct: 926 VGLVTLIGLAAKNAILIVEFAVLLRAEGKGIFDSALEAAKLRFRPIVMTSLAFILGCVPL 985 Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 G + + +L + A ++ + + + S Sbjct: 986 AISSGAGSASRHSIGTGVIGGMLAATLLATFLIPMFYLLVETGAQRLSRR 1035 >gi|300692983|ref|YP_003753978.1| component of acridine efflux pump, multidrug efflux system [Ralstonia solanacearum PSI07] gi|299080043|emb|CBJ52717.1| component of acridine efflux pump, multidrug efflux system [Ralstonia solanacearum PSI07] Length = 1049 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 71/664 (10%), Positives = 180/664 (27%), Gaps = 49/664 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I G + Q + ++P+ P +++ Sbjct: 8 RPVFAWVLALFIIVAGAISV-----TQLPIAQYPTIAPP-------------SIIITATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN--KITLSFADSRFKENIADKVT 116 L + + + IT++F V Sbjct: 50 PGASAKTLDDAVTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 L+ V ++L + + + ++ + + I R +++I Sbjct: 110 NRLKRVEARLPSSVTQQGVQVDKTRSNFLLFATLASKDGKMDPVALGDYISRNVLNEIKR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 Q + + DP++L T + N G + Sbjct: 170 VPGVGQAVLFGT-ERAMRIWIDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSN 228 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + V + G T + + + + + Sbjct: 229 QP----IAATVVVEGQ---------MTTTEQFGNIVLVSKPDGSQVRIKDVARLELGGQT 275 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + I+ + T + L V Sbjct: 276 YATSARINGQPISAIGVQLSPTGNALGTAKAVKAKLDELSKYFPAGVEYKVPYDTSKFVQ 335 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+ + + ++ L+ + ++++ A ++ LG ++ + + Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLVFLQNIRYTLIPSIVVPISLLGAFATMNALGFSINVLT 395 Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IG+ VD I+V E + + + + I + + + Sbjct: 396 MFGLVLAIGILVDDAIVVVENVERIMSEEGLPPREATRKAMGQITGAIIGITLVLMAVFI 455 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDI 525 + FF G R F+++M SI S A+++ A+ + ++K Sbjct: 456 PMAFFSGSVGAIYRQFSLSMVASIFFSALMALTLTPALCATLLKPIEKGSHHEKKGFFGW 515 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 ++ + + I ++ + +L L + Sbjct: 516 FNRMFTSTTNRYQSLVERMLKKTFRYMVIYGALIAAVVLLFMRLPSSFLPNEDQGYIITN 575 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 + + LE ++ + +Q+ +N + + + ++ K ++ Sbjct: 576 IQLPPAASANRTLEVIKKVEGYYQHEKAVENIVAVQGFSFSGNGPNAALVFTTLKDWSQR 635 Query: 646 VPLS 649 Sbjct: 636 GADQ 639 Score = 79.0 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 89/260 (34%), Gaps = 6/260 (2%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 F + + V + V Q S + + + G+++ + Sbjct: 246 QFGNIVLVSKPDGSQVRIKDVARLELGGQTYATSARINGQPISAIGVQLSPTGNALGTAK 305 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692 ++ ++++ P K + I + + + + + + + + + + Sbjct: 306 AVKAKLDELSKYFPAGVEYKVPYDTSKFVQISIEEVVKTLFEAMALVFLVMLVFLQNIRY 365 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L + + + G N+ + ++ IG V+D +VV + + + Sbjct: 366 TLIPSIVVPISLLGAFATMNALGFSINVLTMFGLVLAIGILVDDAIVVVENV--ERIMSE 423 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809 + R+ K++ + G + ++ +PMA + GSV F++ M I +A Sbjct: 424 EGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVASIFFSA 483 Query: 810 SSSIFIAAPILLFIYDWRAK 829 ++ + + + K Sbjct: 484 LMALTLTPALCATLLKPIEK 503 Score = 54.7 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 80/240 (33%), Gaps = 9/240 (3%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 + + + V S Q VR+ V+ Sbjct: 777 RMQPEDIMNLYVRNTQGSMVPMSAFAKGHWMVGPVQLVRYNGYPSVRISGDATTGVSTGD 836 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692 ++ +++ + + + T + S + + S +A+ + + ++ W Sbjct: 837 AMDEMERLASRLPAGIGFEWTGQSLQEKSSGSQAPALYAL--SLLAVFLVLAALYESWSI 894 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 I + L + TL L + ++ ++ ++G S + +++ + + L Sbjct: 895 PAAVILVVPLGVLGTLLGVTLRVMPDDVYFKVGLIAVVGLSAKNAILIIEFAKD---LQA 951 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA 809 + ++++ + TS A + VLP+A+ G+ + + G++ A Sbjct: 952 QGKGLIEATLEAVHLRFRPIIMTSFAFILGVLPLAIATGASSASQRAIGTGVMGGMIAAT 1011 >gi|294851681|ref|ZP_06792354.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella sp. NVSL 07-0026] gi|294820270|gb|EFG37269.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella sp. NVSL 07-0026] Length = 1051 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVND 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + +S N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E++ I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 65.9 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 82/266 (30%), Gaps = 12/266 (4%) Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628 + + + + L + + + + N Sbjct: 775 FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834 Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 A + E+ + + + ++ + G +I I + + + ++ Sbjct: 835 DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889 Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 +W L IT + I L L G+ ++ ++TLIG + +++ + Sbjct: 890 ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLVAKNAILIVEFA--- 946 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 + + S + + V TS+A + V+P+AV G + S + G Sbjct: 947 VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830 ++ A + F I K Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032 Score = 49.3 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 61/540 (11%), Positives = 138/540 (25%), Gaps = 61/540 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGL + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLVAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++ ++ V L G + + +L + F A + I R K Sbjct: 974 TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033 >gi|215488573|ref|YP_002331004.1| multidrug efflux system protein [Escherichia coli O127:H6 str. E2348/69] gi|215266645|emb|CAS11084.1| multidrug efflux system protein [Escherichia coli O127:H6 str. E2348/69] Length = 1034 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L ++ G L L Q + ++P+ P + + + Sbjct: 7 RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48 Query: 62 EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116 +Q + + + S ITL+F + +V Sbjct: 49 YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 LQ L + ++ + ++++ D + + S + D + Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 + D L + T + + N+ G Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + + + + + Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + + T + A L+ + Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ + Sbjct: 335 LSIQEVVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IGL VD I+V E + +++ + + S+ + + + Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMIEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ + + Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGAFFGW 514 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582 + + + + + +++ + + L + +G Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574 Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 + + L+ + + + + E F V G + +K Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634 Query: 643 TEIVPLS 649 + Sbjct: 635 ERSGDEN 641 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + ++ + L +++ + ++ ++ P Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I++ + + + I + + +++ + L + + + T Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + ++ IG V+D +VV + + + + ++ +KS+++ Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMIEDKLPPKEATEKSMSQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V +M +PMA +GGS F+I + + ++ ++ + + + Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710 + G L ++ IS + + + + ++ W + + + L I L Sbjct: 855 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 LF + ++ + +LT IG S + +++ + + M+ + ++ L Sbjct: 915 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 + TS+A + VLP+A+ G + I + G+V A +I Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 >gi|237785617|ref|YP_002906322.1| protein-export membrane protein [Corynebacterium kroppenstedtii DSM 44385] gi|237758529|gb|ACR17779.1| protein-export membrane protein [Corynebacterium kroppenstedtii DSM 44385] Length = 412 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 132/301 (43%), Gaps = 11/301 (3%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I+F+ R GI + + + + G GIDF+GG ++ + A V + E Sbjct: 17 IEFVSQRRRWYGIYAIILVICLVSIIFRGFTLGIDFEGGTKITMPAGDVSKTEVADTFHE 76 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTE 655 + + Q V ++ + + + E + K Sbjct: 77 ATGVEAQQVQIIGSGNARNVEIESKHLNDDEISEAREALFSKYHPKDASGKETPDSIGDS 136 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 V + + ++ +I+ + +YI +RF+ A+ AI+ L +D G +++ G Sbjct: 137 TVSNSWGSTITHRMVLALIVFLALIFLYITVRFERDMAIAAISALAVDAIVVSGLYSIIG 196 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETLGRSV 773 E + +V +LT++ YS+ D VVV+D++ +N T + ++ + + ++N+T+ RS+ Sbjct: 197 FEVSPASVIGLLTVLSYSLYDTVVVFDKVHENTAGLTKTTTSTYAEQANLAVNQTMMRSI 256 Query: 774 YTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 TS+ + + + + + G + ++ G++ SSIF+A PIL+ + + Sbjct: 257 STSLFSILPIGALMVVAVWLLGVGTLKDLSLVQLLGVIEGTFSSIFLATPILVSLKSRQK 316 Query: 829 K 829 K Sbjct: 317 K 317 >gi|70728711|ref|YP_258460.1| multidrug/solvent RND transporter TtgB [Pseudomonas fluorescens Pf-5] gi|68343010|gb|AAY90616.1| multidrug/solvent RND transporter TtgB [Pseudomonas fluorescens Pf-5] Length = 1048 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 73/687 (10%), Positives = 189/687 (27%), Gaps = 39/687 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L L + ++++PS P + Sbjct: 8 RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AISVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + S I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLLVIGVVSEDGSMSKDDLSNYIVSNMQDPISRTAGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L T + N G Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNNYNLTPVDVKTAVAAQNVQVSSGQLGGLPALPGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + ++G Sbjct: 233 TIIGKTRL-------------QTAEQFKAILLKVNKDGSQVRLGDVADVGLGGENYAISA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L + S Sbjct: 280 QFNGKPASGLAVKLANGANALDTAKALRNTIKDLEPFFPQGMKVVFPYDTTPVVTESIKG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+F+ + + ++ ++ + ++ T +L+ G ++ ++ G+V Sbjct: 340 VVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAAGFSINTLTMFGMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531 G + F+IT+ ++ +S+ A+ A+ + + K +R Sbjct: 460 SGSTGVIYKQFSITVVSAMALSVLVALIFTPALCATMLKAVPQGEHATEKRGFFGWFNRT 519 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 F + + +L + + + F GVL + Sbjct: 520 FDRSVKSYERGVGNMLRHKVPYLLAYVLIVLGMIWLFTRIPTAFLPEEDQGVLFAQVQTP 579 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + + + + ++ D EK+ + + G + A + + + + Sbjct: 580 AGSSAERTQVVVDEMRAYLLDKEKDTVASVFTVNGFNFAGRGQSSGMAFIMLKPWGERSA 639 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI 678 +N +++ ++ + Sbjct: 640 ENNVFNLATRAQQHFFSFRDAMVFAFA 666 Score = 71.6 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 88/237 (37%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + IS Q + L +++ + L K + Sbjct: 258 SQVRLGDVADVGLGGENYAISAQFNGKPASGLAVKLANGANALDTAKALRNTIKDLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I+ + ++ + + + + +++ + + + T+ + + Sbjct: 318 PQGMKVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A G N + ++ IG V+D +VV + + ++ +S ++ KS+ Sbjct: 378 GTFGILAAAGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMHEEGLSPKEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +LPMA + GS F+I + + ++ ++ + Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITVVSAMALSVLVALIFTPAL 492 Score = 65.9 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 67/164 (40%), Gaps = 7/164 (4%) Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732 +S + + + + ++ W + + + L I L ++ G+ ++ +L IG Sbjct: 876 ALSLLMVFLCLAALYESWSIPIAVMLVVPLGIIGALMATSMRGLSNDVYFQVGLLVTIGL 935 Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789 + + +++ + ++ L+ S D ++ L + TS+A + V+P+A+ Sbjct: 936 AAKNAILIVEFAKE---LHEQGRSLVDAAVEACRMRLRPIIMTSLAFVLGVVPLAISTGA 992 Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 G + + G++ A +IF + + + A + Sbjct: 993 GSGSQHAIGTGVIGGMLTATILAIFWVPLFFVTVSSMGRRKADL 1036 >gi|170724502|ref|YP_001758528.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella woodyi ATCC 51908] gi|169809849|gb|ACA84433.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Shewanella woodyi ATCC 51908] Length = 1045 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 73/691 (10%), Positives = 181/691 (26%), Gaps = 51/691 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I GL+ + ++PS P + + + Sbjct: 8 RPIFAWVIAIIIMLAGLMAI-----KGLPVSQYPSIAPPT-------------VAITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S +ITL+F + +V Sbjct: 50 PGASAKTVEDTVTQVIEQRMTGLDHLRYIKSTSDSFGNAEITLTFNAEADGDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + + + +++ D + S + D + Sbjct: 110 KLQLAMPLLPQEVQAQGVGVAKTSAGFLMVLGFVSDDGSMDKADISDYVAANIQDPMSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L+Q T+A + N G Sbjct: 170 AGVGDIQLFGAQ-YAMRIWLDPMKLKQYSLTSADVVMAIREQNAQVSAGQLGGSPAVMGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + ++ + F + Sbjct: 229 ELNATISAQSRL-------------QTAEEFEQIVLKSDVSGAKVFLGDVSTVEVGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + A + T ++ ++ Sbjct: 276 MVNSFYNGKPASGMAIQLAAGANALDTAAAVMAQIDEMKPFFPQGLNVVLPFDTTPFVSK 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV ++++ + + L+ ++ + ++ T +L++ G ++ ++ Sbjct: 336 SIEGVVHTLLEAVILVFFIMYLFLQNFRATLIPMIAVPVVLLGTFGILAVTGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + +T V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGCSPLEATRKSMDQITGALVGIGLTLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + F G R F+IT+ ++ +S+ A+ + A+ + Sbjct: 456 MAFMSGSTGVIYRQFSITIVSAMALSVLVAVILTPALCATMLKPVEKGHGYTNKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A+ R V L + + + +G I V Sbjct: 516 NRTFDRWTSRYEASVAVIIKRTGRVFVIYLALVVATAWVFMRLPTAFLPDEDQGVIFSQV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + ++ + + + + + F V G +K Sbjct: 576 MLPANATQESTMKVMDKVSDYLLESEKENVQSVFAVSGFSFAGMGQNMGIAFIGLKPWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 P +Q+ + + + Sbjct: 636 RSNPGQDVQSIANRAMGYFMTIKEAFVFAFV 666 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 82/235 (34%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + ++ + + +++ + ++ P Sbjct: 260 VFLGDVSTVEVGAESYMVNSFYNGKPASGMAIQLAAGANALDTAAAVMAQIDEMKPFFPQ 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + ++ + I + +++ + + L + + + + T Sbjct: 320 GLNVVLPFDTTPFVSKSIEGVVHTLLEAVILVFFIMYLFLQNFRATLIPMIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G A+ G N + A++ IG V+D +VV + + + S + KS+++ Sbjct: 380 FGILAVTGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGCSPLEATRKSMDQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G V + +PMA GS F+I + + ++ ++ + + Sbjct: 438 ITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVAVILTPAL 492 Score = 66.3 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 79/256 (30%), Gaps = 12/256 (4%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V ++ + S + G + F G ++ PG S Sbjct: 789 VRNDQGEMVPFSAFATGSWEFGAPRLERFGGLPAVNIQGATIPGFSTGAAMDSIETMAGK 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + +++ L+ + W + I + L Sbjct: 849 LPAGFGIAWNGLSYEERLSGNQAPMLYALSILVVF---LVLAALYESWSVPISVILVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 I L G+ ++ +LT +G + + +++ + ++ Y S D Sbjct: 906 GIIGALLATYGRGLNNDVFFQVGLLTTVGLATKNAILIVEFAKEY---YEKGASLTDATL 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A + V+P+A+ G + + G++ + IF Sbjct: 963 HAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGAQNAIGTGVVGGMLSSTFLGIFFVPLF 1022 Query: 820 LLFIYD---WRAKNAR 832 + + R + + Sbjct: 1023 FVIVERIFSKREQKKK 1038 >gi|56384968|gb|AAV85950.1| AcrB [Morganella morganii] Length = 1058 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 69/690 (10%), Positives = 182/690 (26%), Gaps = 51/690 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ + GLL + + + ++P+ P + + + Sbjct: 8 RPIFAWVIAIITMLAGLLAIM-----KLPVAQYPTVAPPT-------------ISISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117 +Q + + V+ + I+L+F + +V Sbjct: 50 PGADAETVQNTVTQVIEQNMNGIDKMVYMSSTSDSAGSMNISLTFEADANPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + ++ + ++++ + + + + D I Sbjct: 110 KLQLAMPLLPQEVQQQGITVEKSTSSFLLVAGFVSEDGTMSQNDIADYVGSNVKDPISRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L + +T + + NN G + Sbjct: 170 TGVGETQLFGTQ-YAMRIWLDPDKLVKYNLSTIDIINAIQVQNNQVAAGQLGGTPPVPNQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + + + Sbjct: 229 RLNTSIIAQTRL-------------NTPEQFQEIMLRVNTDGSVVRLKDVAYVELGAENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + + + Sbjct: 276 GIIARYNGKPAAGIGIKLATGANALDTAKAVRDKLTEMSEFFPDGLEVVYPYDTTPFVKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T A L+ G ++ ++ Sbjct: 336 SIFEVVKTLVEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFATLAAFGYSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + S + + + Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQETGLPPKEATKISMGQIQSALVGIAMVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG R F+IT+ ++++S+F A+ + A+ + + Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMILSVFVALILTPALCATMLKPVAKGSHGSQTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + D + + + +L + + + +G + V Sbjct: 516 NRVFEKQTNHYTDSVGRMLRGTGRYLLIYVLLVAGMIVMFTRLPTSFLPEEDQGVLLSMV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ L+ + + + E F V G ++K Sbjct: 576 QLPPGSTQEQTQTVLDGVSKYYLEDEKKVVESVFTVNGFGFAGQGQNMGLAFIVLKNWDE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 ++ + I V Sbjct: 636 RKAKEDKVEAVVARANQHFFTNSSASIFAV 665 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 86/235 (36%), Gaps = 6/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + I + + +++ + + +++E P Sbjct: 260 VRLKDVAYVELGAENYGIIARYNGKPAAGIGIKLATGANALDTAKAVRDKLTEMSEFFPD 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + ++ + + + + +++ + + L + + + T Sbjct: 320 GLEVVYPYDTTPFVKISIFEVVKTLVEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 A FG N + A++ IG V+D +VV + + + T + ++ S+ + Sbjct: 380 FATLAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQETGLPPKEATKISMGQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 V +M +PMA +GGS F+I + ++++ ++ + + Sbjct: 438 IQSALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMILSVFVALILTPAL 492 Score = 68.9 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 87/281 (30%), Gaps = 7/281 (2%) Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 F + + V S + +F + E+ Sbjct: 761 FIDRGRVKKVYVQADAPFRMQPKNIAEQYVRNNQGQMVPFSAFIDTKKDPWTFGSPRLER 820 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI- 674 + G + + + L E G +L + Sbjct: 821 YNGIPAMQIQGSAAPGKSSGDAMALMENMAKELPQGFGVEWTGMSYQEKLSGNQAPALYT 880 Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733 IS I + + + ++ W + + L + L G++ ++ +LT IG S Sbjct: 881 ISLIVVFLCLAALYESWSVPFSVMLVVPLGVIGALLLTHARGLDNDVYFKVGLLTTIGLS 940 Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790 + +++ + + M+ + +++ L + TS+A + V+P+ + G Sbjct: 941 AKNAILIVEFAKDLMEKEGKG--LIEATLEAVKMRLRPILMTSLAFMLGVIPLVLSNGAG 998 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + G++ A S +IF + I +K + Sbjct: 999 SGAQNAVGTGVFGGMIAATSLAIFFVPVFYVVIRRRFSKKS 1039 Score = 46.6 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 58/525 (11%), Positives = 134/525 (25%), Gaps = 33/525 (6%) Query: 7 LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66 +L ++ G+++ + P +S+ G + + D Sbjct: 539 RYLLIYVLLVAGMIV----MFTRLPTSFLPEEDQGVLLSMVQLPPGSTQEQTQTVLDGVS 594 Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126 +L+ + S G G Q + + ++ DKV + N Sbjct: 595 KYYLEDEKKVVESVFTVNGFGFAGQGQNMGLAFIVLKNWDERKAKEDKVEAVVARANQHF 654 Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE--QSMEIIRQRIDQIGISESTIQRL 184 + ++ + + S +++ +A + +++ R ++ ++ + Sbjct: 655 FTNSSASIFAVNIPPIVELGSSSGFDLELMDNANQGHEALTAARNQLLKMAGEHPDMLVQ 714 Query: 185 ---GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 Q D + L ++ F Sbjct: 715 VRPNGMEDTSQYHIHVDQQKAEALGVDIKTINAALSTMFGGSYVNDF------------- 761 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 G P +P + I G Sbjct: 762 ------IDRGRVKKVYVQADAPFRMQPKNIAEQYVRNNQGQMVPFSAFIDTKKDPWTFGS 815 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + A L + + S + Sbjct: 816 PRLERYNGIPAMQIQGSAAPGKSSGDAMALMENMAKELPQGFGVEWTG-MSYQEKLSGNQ 874 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 I +V + L + + L VI L L G + G++ Sbjct: 875 APALYTISLIVVFLCLAALYESWSVPFSVMLVVPLGVIGALLLTHARGLDNDVYFKVGLL 934 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 IGL+ + IL+ E ++ ++ + + + I +++ ++ + L Sbjct: 935 TTIGLSAKNAILIVEFAKDLMEKEGKGLIEATLEAVKMRLRPILMTSLAFMLGVIPLVLS 994 Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 G GA + ++ + AI V + I R KS Sbjct: 995 NGAGSGAQNAVGTGVFGGMIAATSLAIFFVPVFYVVIRRRFSKKS 1039 >gi|167568973|ref|ZP_02361847.1| hydrophobe/amphiphile efflux family protein [Burkholderia oklahomensis C6786] Length = 1066 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 69/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+ + ++P+ P + + + Sbjct: 8 RPIFAWVIAIILMLAGIAAIF-----TLPISQYPTIAPP-------------SIQITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S ITL+FA + +V Sbjct: 50 PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L ++ L T +++ N + + + + + D I Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP+RL T ++ N G G Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTRLTNYGLTPVDVTTAITQQNVQIAGGQIGGTPAVPGT 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + + + + + + IG Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAKIGLGGENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + L + Sbjct: 276 SFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDDLSKDFPHGLVVKYPYDTTPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + ++ ++ + ++ T A++S++G ++ S+ Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + S + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPREATRKAMGQITGALVGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F++T+ ++++S+ A+ + A+ I +K I Sbjct: 456 VAFSGGSVGAIYRQFSLTIVTAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKTG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F +R S L + Sbjct: 511 FFGWFNRNFNASRDKYHVGVHHVIKRSGRWLIIY 544 Score = 78.2 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 86/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + L +++A + + +++ Sbjct: 258 SQVRLKDVAKIGLGGENYSFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDDLSKDF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + R I + + ++ + + + +++ + + + + + Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T ++ G N ++ ++ IG V+D +VV + + + +S R+ K++ Sbjct: 378 GTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVTAMVLSVLVALILTPAL 492 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + ++G ++ Q PG S Q K + + + Sbjct: 816 ERYNGISAMEIQGQAAPGKSTGQAMTAMESLAKKLPNGIGYSWTGLSFQEIQSGSQAPIL 875 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + +++ + + + W I + L + L L G+E ++ +LT Sbjct: 876 YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 +G S + +++ + R+ + + + ++ L + TS+A + VLP+A+ Sbjct: 933 TVGLSAKNAILIVEFARE--LQQSEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990 Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 G + + + G++ A +IF+ + Sbjct: 991 SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026 Score = 57.8 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 61/516 (11%), Positives = 142/516 (27%), Gaps = 32/516 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I ++I +GLL + P + G + Sbjct: 536 RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + L + + S G Q + + D +++ KV + Sbjct: 590 LANISDYLLNDEKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYAQRQHANQKVQALIGR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA--IEQSMEIIRQRIDQIGISES 179 + + ++ + + ++ +A ++ R ++ + + Sbjct: 650 MFGRYAGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGHGHDALMAARNQLLMLAAKDP 709 Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239 T+Q + + + + D R + ++ + S V D+DG Sbjct: 710 TLQGVRPNGLNDTPQYKVDIDREKANALG---VTASAIDQTFSIAWASSYVNNFLDTDGR 766 Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299 KV + T + + A T + + Sbjct: 767 I----KKVYVQSDAPFRMTPDDMNIWYVRNGSGGMVPFSAFSTGHWTYGSPKLERYNGIS 822 Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359 + T + G L+ E ++ Sbjct: 823 AMEIQGQAAPGKSTGQA------MTAMESLAKKLPNGIGYSWTGLSFQEIQSGSQA---- 872 Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419 AI +V + L + + L VI L +L G + G Sbjct: 873 ---PILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVG 929 Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 ++ +GL+ + IL+ E RE + + + I +++ ++ + L Sbjct: 930 LLTTVGLSAKNAILIVEFARELQQSEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLA 989 Query: 479 FF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511 G + + ++ + F AI ++ Sbjct: 990 ISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025 >gi|255693717|ref|ZP_05417392.1| AcrB/AcrD/AcrF family protein [Bacteroides finegoldii DSM 17565] gi|260620534|gb|EEX43405.1| AcrB/AcrD/AcrF family protein [Bacteroides finegoldii DSM 17565] Length = 1010 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 90/687 (13%), Positives = 194/687 (28%), Gaps = 53/687 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R +L +I G + + +PS Sbjct: 9 RRPVLATVLTIIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 D + + ++ + + +Q Q++IT+ F S E A+ V + Sbjct: 55 NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L D + I++ D +E S +Q+ Sbjct: 115 AQRYLPRDCDPPTVSKADADAQPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP ++ + + N + Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMAGYGISPIDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 L T D+ E R A + Sbjct: 233 L--------------------MHTADEFNDLIIKESDNRIVRFSDIGRAELGPADIKSYM 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + + + + ++ N S + Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYGFDNTKFIRASINE 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 K T LV+I++F+ + + LV I +++I ++ L G ++ + S+ IV Sbjct: 333 VKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L +GL VD I++ E I K S + G + + + IT + + F Sbjct: 393 LSVGLVVDDAIVMTENIYIRIEKGMSPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452 Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G R F+I + S++IS F A++ + ++ ++ +S FF + + Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQSWFYAKTEPFFEGMNRL 512 Query: 539 AIQ----FMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + F+R R+ + +++ ++ + I + V Sbjct: 513 YSRSLAAFLRKRWIALPFTVITICLIGILWNIVPAEMAPLEDRSQISINTRGAEGVTYEY 572 Query: 594 VRSNLESLQIGDISF---------QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 +R E + S + G N + L+ + Q V E + K + + Sbjct: 573 IRDYTEDINQLVDSILPDAEAVTARVSSGSGNVRITLKDMQDRNYTQMEVAEKISKAVQK 632 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671 + + + + ++ Sbjct: 633 KTMARSFVQQQSSFGGRRGSMPVQYVL 659 Score = 82.4 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%) Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654 R+ L I N +V Q V + +++ ++ Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYG 319 Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714 I + + ++I W L + + + L Sbjct: 320 FDNTKFIRASINEVKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379 Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774 G N+ ++ A++ +G V+D +V+ + + +S ++ + E + Sbjct: 380 GFSINVLSMLAIVLSVGLVVDDAIVMTENI---YIRIEKGMSPKEAGIEGAKEIFFAVIS 436 Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 T++ P+ G F+I ++ +++++ +++ + + R K + Sbjct: 437 TTITLVAVFFPIVFMDGMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQS 496 Score = 62.8 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 + L + T+ L I L F I N+ + ++ LIG + +++ + Sbjct: 866 SFKDPLVIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805 + I + + L + TS + + ++P+A G + G+ Sbjct: 923 QKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982 Query: 806 VVAASSSIFIAAPILLFIYDWRAKN 830 VV+ +++I I +I R K Sbjct: 983 VVSTLLTMYIVPAIYSYISTNRIKK 1007 >gi|320534399|ref|ZP_08034883.1| protein-export membrane protein SecF [Actinomyces sp. oral taxon 171 str. F0337] gi|320133398|gb|EFW25862.1| protein-export membrane protein SecF [Actinomyces sp. oral taxon 171 str. F0337] Length = 367 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 77/309 (24%), Positives = 145/309 (46%), Gaps = 13/309 (4%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 L +I F+ R I+++ + S LL T GL GIDFKGG ++ + Sbjct: 9 NELYSAKTSIAFVGKRRIWYLIAVVIVLGSATLLATVGLTPGIDFKGGSEITITGLSSPS 68 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 L + S G + V+ + +++ R+ + + T ++ Sbjct: 69 ERPANEALSKSDLAASSSVTTMGSGSVRVQT-----NQLSKQRLDSLAGELATAYKTNAS 123 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 + VGP S ++ +K G+++ I + + IW F+ W A+ A+ L DI T+G Sbjct: 124 NVSATTVGPTWSSDVTKKAARGLVLFFIFVGLLIWAYFRTWKMAVAALLALCHDIVVTVG 183 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINE 767 +AL G E + VLT++GYS+ D VVV+D++R+N + + + ++ +L + ++N+ Sbjct: 184 IYALSGFEVTPATIIGVLTILGYSLYDTVVVFDKIRENTEGFESQSRSTYAELANLAVNQ 243 Query: 768 TLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 T RS+ TS+ + V + + G + A+ + G++ SSIF+A P+L+ Sbjct: 244 TFIRSINTSVVGVLPVASLLFVGAFILGAGTLRDIALTLFIGMIAGTLSSIFLATPLLVD 303 Query: 823 IYDWRAKNA 831 + + Sbjct: 304 LRSREKRIK 312 >gi|161519923|ref|YP_001583350.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia multivorans ATCC 17616] gi|189353900|ref|YP_001949527.1| putative cation/multidrug efflux pump [Burkholderia multivorans ATCC 17616] gi|160343973|gb|ABX17058.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Burkholderia multivorans ATCC 17616] gi|189337922|dbj|BAG46991.1| putative cation/multidrug efflux pump [Burkholderia multivorans ATCC 17616] Length = 1061 Score = 194 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 67/548 (12%), Positives = 152/548 (27%), Gaps = 31/548 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I G++ + +P +P + I Sbjct: 10 RPIFAGVLSVLILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + +E + ++ N IT++F + V + Sbjct: 56 PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 +L D ++ + T ++ + D++ + Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 Q + DP ++ Q + N + G Q Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLAAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQL 235 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + + I + Sbjct: 236 SVNARGRLQTEE-------------EFGDIVVKTTPDGGVTHLRDIARIELDASEYGLRS 282 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L + + + A L+ + S Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV+IV+ + + + ++ ++ ++++ T +LL G ++ S+ G+V Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLGFGYSINALSLFGMV 402 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480 L IG+ VD I+V E + S + I +T + V L F Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGMSARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462 Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G + FA+T+ +S +IS F ++++ A+ +++ K + + L Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522 Query: 539 AIQFMRAR 546 + R Sbjct: 523 RFNKVFHR 530 Score = 55.1 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L I + + I L L + N+ ++ L+G S + +++ + R+ Sbjct: 902 SLTLPLAVILIVPMSILSALTGVWLTHGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L + + ++ L + TS+A + V+P+ G + + + + FG+ Sbjct: 960 -LEHDGKTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018 Query: 806 VVAASSSIFIAAPILLFIY 824 + + + + + Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037 Score = 51.2 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 89/254 (35%), Gaps = 14/254 (5%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + V ++ +R + V + ++ + V+K Sbjct: 252 IVVKTTPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695 + E+ + + +R I V+ + + A+ + + W ++ Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 + + + I T FG N ++ ++ IG V+D +VV + + +N+ + Sbjct: 371 PLIAVPVSIVGTFSLLLGFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGM 427 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811 S R K++ E G + ++V + G FA+ +A V++A + Sbjct: 428 SARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486 Query: 812 SIFIAAPILLFIYD 825 S+ ++ + + Sbjct: 487 SLTLSPALSAILLK 500 >gi|157963871|ref|YP_001503905.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella pealeana ATCC 700345] gi|157848871|gb|ABV89370.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Shewanella pealeana ATCC 700345] Length = 1052 Score = 194 bits (491), Expect = 8e-47, Method: Composition-based stats. Identities = 70/687 (10%), Positives = 184/687 (26%), Gaps = 43/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + + ++PS P + + V Sbjct: 8 RPIFAWVIAIIVMLAGVLSIV-----GLPVSQYPSIAPPSVV---------ISAVYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + + +ITL+F + +V LQ Sbjct: 54 AKTMEDSVTQVIEQRMTGIDHLRYITSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + + + ++++ + + + D + Sbjct: 114 AMPLLPQEVQAQGVNVSKSSAGFLMVAAFVSQDGSLDKNDIADYVGSNIQDPLSRVPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP +L Q T+ + N G Sbjct: 174 TIELFGAQ-YAMRIWLDPLKLTQYNLTSQDIISSIREQNAQVSAGQLGGAPSVAGQELNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + I + + F + Sbjct: 233 TVSAQSRL-------------QTADQFKKIIIKADTSGAKVFLEDVARVELGAESYAVES 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T E ++ + S Sbjct: 280 FYNGKAAAGVGIQLATGANALATAEGVRAKINEMKPFFPDGMEVVYPYDTTPFVEKSIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +++++ + + L+ ++ + ++ T A+L+ G ++ ++ +V Sbjct: 340 VVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILAAAGFSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + +T V + F Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPVEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSIDINP 527 G R F+IT+ ++ +S+ AI + A+ +++ + Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVMVAIILTPALCATMLKPIAKGESHAKTGFFGWFNRKF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + +A R + + + + +G + + Sbjct: 520 DALTSRYESSVAAMIKRTGRTMMVYLAITVAVGWIFMRMPTAFLPDEDQGILFTQAILPV 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 ++ LE + ++ + + + F V G+ +K P Sbjct: 580 NSTQQETKAVLERVTDFYLNEEGENVKSVFSVSGFSFAGNGQNMGIAFVGLKDWAERSEP 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 +Q+ + + + + Sbjct: 640 GQDVQSVANRAMGMFMGMKEAFVFAFV 666 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 80/240 (33%), Gaps = 6/240 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + V L V + + + +++A + ++ Sbjct: 255 TSGAKVFLEDVARVELGAESYAVESFYNGKAAAGVGIQLATGANALATAEGVRAKINEMK 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + ++ + + + + +++ + + L + + Sbjct: 315 PFFPDGMEVVYPYDTTPFVEKSIEGVVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T A G N + A++ IG V+D +VV + + + +S + Sbjct: 375 VLLGTFAILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPVEATK 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+++ G V + +PMA GS F+I + + ++ +I + + Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVMVAIILTPAL 492 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 75/242 (30%), Gaps = 11/242 (4%) Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632 + + V ++ + S Q G + F G ++ PG S Sbjct: 779 MQPEDLDSWYVRNDKGEMVPFSAFASGSWQYGSPRLERFGGLPAMNIQGGTAPGYSTGAA 838 Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691 K + + +S + + + + ++ W Sbjct: 839 MDDIEAMAKKLPPGFGIEWNGLSYEERLSGN----QAPMLYALSIVVVFLVLAALYESWS 894 Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 + + L I L G+ ++ +LT +G + + +++ + ++ Y Sbjct: 895 VPFAVVLVVPLGIIGALIAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF---Y 951 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808 + ++ L + TS+A + V+P+A+ G + + G++ + Sbjct: 952 EKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGGMMSS 1011 Query: 809 AS 810 Sbjct: 1012 TF 1013 >gi|326570267|gb|EGE20312.1| preprotein translocase subunit SecF [Moraxella catarrhalis BC8] Length = 378 Score = 194 bits (491), Expect = 8e-47, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 156/296 (52%), Gaps = 4/296 (1%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 LI + I FM+ + S+L + + + GLN+G+DF GG+ V +PV+ + Sbjct: 60 LIANQRIIPFMKLEKPMIVFSVLSILIGLIAIIVKGLNFGLDFTGGVSANVAYEQPVEQA 119 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V L D Q + LVRL Q G + + L+ + + STI Sbjct: 120 QVIKALADNGFNDAVAQYLGTRQELLVRLPPQDGSAENLSASLDQI---LNFPNNPSTID 176 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + I+G ++ E+ ++ + ++ MLIY+ RF++ ALGA+ L D+ +G FA Sbjct: 177 SISIIGSQLGNEIYLNSLLAMSVALGMMLIYVATRFQFKLALGAVLALFHDVIIVVGIFA 236 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 + G F+LT +AAVL LIGYSVND +VVYDR+R+N + ++ R ++D S+ ETL R+ Sbjct: 237 IMGWPFDLTVLAAVLALIGYSVNDTIVVYDRIRENFRR-VRGLTPRQVLDLSLTETLRRT 295 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + T F+ V+ M GG + F++ + G++ SSI++A+ I L + R Sbjct: 296 IMTVGTVFVVVVAMLFLGGDGLYWFSVALFIGLIAGTYSSIYVASSIPLMMGLSRE 351 >gi|254821449|ref|ZP_05226450.1| preprotein translocase subunit SecF [Mycobacterium intracellulare ATCC 13950] Length = 432 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 124/300 (41%), Gaps = 15/300 (5%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA---NRPVDLSVVRSNLES 600 R GIS ++ + G ++GIDF GG + + A + V S V+ Sbjct: 49 GRRRLWFGISGAIVAVALLSILLRGFSFGIDFNGGTTVSMPANGTHGTVHTSQVQDVFRK 108 Query: 601 LQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 D G + + + + K + P + Sbjct: 109 TLGNDAESVVVVGNGAAATVQIRSETLSNDQTTKLRNALFDAFGPKGPDGKPSKQAISDS 168 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 V ++ K + +++ + +YI +R++ Y L AI + D+ T G ++L G Sbjct: 169 AVSETWGDQITMKALFALVVFLALVGVYITVRYERYMTLAAIAAMFFDLAVTAGVYSLVG 228 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSV 773 E V +LT++G+S+ D V+V+D++ +N + +F + + +IN+T RS+ Sbjct: 229 FEVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHKPKRTFAEEANLAINQTFMRSI 288 Query: 774 YTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 TS+ + VL + + G + A+ GI+V SSIF A P+L+ + + Sbjct: 289 NTSLIGVLPVLALMVVAVWLLGVGTLKDLALVQLIGIIVGTYSSIFFATPLLVSMRERTE 348 >gi|197284043|ref|YP_002149915.1| inner membrane rnd family protein acrb [Proteus mirabilis HI4320] gi|227358086|ref|ZP_03842428.1| cation/multidrug efflux pump [Proteus mirabilis ATCC 29906] gi|194681530|emb|CAR40435.1| inner membrane rnd family protein acrb [Proteus mirabilis HI4320] gi|227161821|gb|EEI46853.1| cation/multidrug efflux pump [Proteus mirabilis ATCC 29906] Length = 1052 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 71/692 (10%), Positives = 183/692 (26%), Gaps = 43/692 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ + GLL + + + ++P+ P V + Sbjct: 8 RPIFAWVIAIITMLAGLLALI-----KLPVAQYPTIAPPAI---------SISAVYPGAD 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + ITL+F + +V LQ Sbjct: 54 ATTVQNTVTQVIEQNMNGIDNMVYMSSTSDSAGMMNITLTFEAGTDPDIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + ++++ + + + D + Sbjct: 114 AMPLLPQEVQQQGISVDKSSSSFLMVAGFISGDGSMSQDDIADYVGATIKDPLSRVTGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP +L + TT + NN G Sbjct: 174 ETQLFGTQ-YAMRIWLDPDKLVKYNMTTLDVINAIKSQNNQVAAGQLGGTPPVPGQRLNV 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + + + Sbjct: 233 SIIAQTRL-------------NTPEQFADILMKVNQDGSQVKLKDLGIVEMGAENYSTIA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T A + + S Sbjct: 280 RFNGLPAAGIGIKLATGANALDTATAVRAALADMEPFFPSGLEVVYPYDTTPFVKISIFE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T A+LS G ++ ++ +V Sbjct: 340 VVKTLVEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F++T+ ++++S+F A+ + A+ + ++ + Sbjct: 460 GGSTGAIYRQFSVTIVSAMVLSVFVALILTPALCATLLKPIPKGSHGVQTGFFGWFNRVF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 D ++ + + +L + +I + + +G + V Sbjct: 520 EKSSHHYTDSVSRTLRGTGRYLLIYVLLVAAMAIMFVRLPASFLPEEDQGVLLTMVQLPA 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + L + + + + F V G ++ Sbjct: 580 GSTQEQTQDVLAQVNDYFNTKEKDVVKSVFTVSGFGFGGQGQNMGLAFVVLNDWDERKSD 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679 + + ++ + I AI Sbjct: 640 QDKVPAIVGRANQALSQIKEAFVYSFNIPAIV 671 Score = 75.1 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 79/211 (37%), Gaps = 7/211 (3%) Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 ++L T V + + P + + + ++ + + Sbjct: 291 IKLATGANALDTATAVRAALADMEPFFPSGLEVVYPYDTTPFVKISIFE-VVKTLVEAIM 349 Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737 + + +++ + + L + + + T + FG N + A++ IG V+D Sbjct: 350 LVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFAMVLAIGLLVDDA 409 Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794 +VV + + + +S ++ KS+ + G V ++ +PMA +GGS Sbjct: 410 IVVVENV--ERVMQEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFFGGSTGAIY 467 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 F++ + +V++ ++ + + + Sbjct: 468 RQFSVTIVSAMVLSVFVALILTPALCATLLK 498 Score = 73.6 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 82/244 (33%), Gaps = 8/244 (3%) Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 S + ++ + G + ++G ++ PG S ++ Sbjct: 801 SSFIDTSKDPWLYGSPRLERYNGLPAVQIQGSATPGQSSGDAMLMMEQLASKLPSGIGYE 860 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 + + +I+ + + + W + + L + L F Sbjct: 861 WTGMSYQERLSGNQAPALYTISLIVVFLCLA---ALYESWSVPFSVMLVVPLGVIGALAF 917 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 L G+E ++ +LT IG S + +++ + + M+ + S+ L Sbjct: 918 TTLRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LVEATLDSVRMRLR 975 Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827 + TS+A + V+P+ + G S + G++ A S +I+ + I Sbjct: 976 PILMTSLAFMLGVIPLVLSNGAGSGAQNSVGTGVFGGMIAATSLAIYFVPIFFVVIRRRF 1035 Query: 828 AKNA 831 AK Sbjct: 1036 AKKN 1039 >gi|300787169|ref|YP_003767460.1| preprotein translocase SecF subunit [Amycolatopsis mediterranei U32] gi|299796683|gb|ADJ47058.1| preprotein translocase SecF subunit [Amycolatopsis mediterranei U32] Length = 404 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 66/323 (20%), Positives = 135/323 (41%), Gaps = 15/323 (4%) Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 L A + R + + + G N GI+F+GG Q+ Sbjct: 19 KPGKRESVFHRLYVGTGAFDVVGKRKRWYIFFAALVLVCLASMIFRGFNIGIEFEGGTQI 78 Query: 582 GVLANRP----VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637 + AN + S ++L Q ++++ ++ ++ + Sbjct: 79 QMPANGIHGVITEDQAKESFQKALGHPAAETQKVGTGAASTIQIRTDTLNAADVAKLKQG 138 Query: 638 VKKKITEIV----PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693 + + + P + V E+ +K ++ + + +A++I++ I F A Sbjct: 139 LFQDLGPKGTSGQPSVQAISDSAVSASWGGEISQKALIALAVFLVAVVIFLAIYFDLRMA 198 Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LY 751 A+ +L+ DI T G ++L G E V +LT++G+S+ D VVV+D++R+N + L Sbjct: 199 TAALVSLLHDILVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVVVFDKVRENTRGLLG 258 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIV 806 T ++ + + ++N+TL RS T+ A + +L + + G + A+ G + Sbjct: 259 LTRRTYAEAANLALNQTLMRSFNTAFIALLPILGLLIVGYVLLGSGTLQDLALVQLTGTL 318 Query: 807 VAASSSIFIAAPILLFIYDWRAK 829 V SS+ +A P+L+ K Sbjct: 319 VGVLSSVALATPLLVDFKMRDPK 341 >gi|221200903|ref|ZP_03573944.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD2M] gi|221207098|ref|ZP_03580109.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD2] gi|221210232|ref|ZP_03583212.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD1] gi|221169188|gb|EEE01655.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD1] gi|221173172|gb|EEE05608.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD2] gi|221179475|gb|EEE11881.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD2M] Length = 1061 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 67/548 (12%), Positives = 152/548 (27%), Gaps = 31/548 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I G++ + +P +P + I Sbjct: 10 RPIFAGVLSVLILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + +E + ++ N IT++F + V + Sbjct: 56 PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 +L D ++ + T ++ + D++ + Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 Q + DP ++ Q + N + G Q Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLAAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQL 235 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + + I + Sbjct: 236 SVNARGRLQTEE-------------EFGDIVVKTTPDGGVTHLRDIARIELDASEYGLRS 282 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L + + + A L+ + S Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV+IV+ + + + ++ ++ ++++ T +LL G ++ S+ G+V Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLGFGYSINALSLFGMV 402 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480 L IG+ VD I+V E + S + I +T + V L F Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGMSARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462 Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G + FA+T+ +S +IS F ++++ A+ +++ K + + L Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522 Query: 539 AIQFMRAR 546 + R Sbjct: 523 RFNKLFHR 530 Score = 55.1 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L I + + I L L + N+ ++ L+G S + +++ + R+ Sbjct: 902 SLTLPLAVILIVPMSILSALTGVWLTHGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L + + ++ L + TS+A + V+P+ G + + + + FG+ Sbjct: 960 -LEHDGKTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018 Query: 806 VVAASSSIFIAAPILLFIY 824 + + + + + Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037 Score = 51.2 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 89/254 (35%), Gaps = 14/254 (5%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + V ++ +R + V + ++ + V+K Sbjct: 252 IVVKTTPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695 + E+ + + +R I V+ + + A+ + + W ++ Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 + + + I T FG N ++ ++ IG V+D +VV + + +N+ + Sbjct: 371 PLIAVPVSIVGTFSLLLGFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGM 427 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811 S R K++ E G + ++V + G FA+ +A V++A + Sbjct: 428 SARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486 Query: 812 SIFIAAPILLFIYD 825 S+ ++ + + Sbjct: 487 SLTLSPALSAILLK 500 >gi|317487252|ref|ZP_07946047.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila wadsworthia 3_1_6] gi|316921442|gb|EFV42733.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila wadsworthia 3_1_6] Length = 1044 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 68/684 (9%), Positives = 181/684 (26%), Gaps = 48/684 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G + + ++++P P + + Sbjct: 8 RPVFAWVIAILIMMAGGISIF-----RLPVEQYPRIAPPV-------------VTITAKY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117 L+ + L G+ + Q I L+F + +V Sbjct: 50 SGASAQTLEDTVAQVIEQKLNGIDGLLYINSTSDAAGQVSIRLTFDPDTNPDVAQMQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ S L + + + T + + + A + + +D + Sbjct: 110 KLQLATSSLPEEVTRQGITVTKVADSFLQMYAFVSSDDSMSAADLCDFVGSTILDPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + +PS+L T + + N G + +RD Sbjct: 170 DGVGEVSLFGAP-YAMRIWLNPSKLLSYSLTPSDVINAVKAQNKQVSLGEVGGKPIRDGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 ++ + +++ + + + Sbjct: 229 QMNVTIKAQKQLT-------------SVPEFERILLRVNPDGSAVRLRDVARVELGQESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + T +R + V Sbjct: 276 TSSARYNGKPAAGVGIKLASDANALNTSNAVAAFIEDMRPYFPHGVEVVSPYDTVPFIKI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV V+++ + + ++ ++ + ++ T +++ G ++ ++ Sbjct: 336 SIIEVVKTLLEAIVLVFAVIYLFLQNFRATIIPSLAVPVVLLGTFGVMAAFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + V Sbjct: 396 FGMVLAIGLLVDDAIVVVENVARVMEEDGLPPREATIKTMGQITGALIGVAAVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526 + FFGG R F++T+ ++++S+ A+ + + ++ + + Sbjct: 456 MAFFGGTVGAIYRQFSLTIVSAMILSVVVAVVLTPVLCSTFLKPGHMASQHGFFGWFNRS 515 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + V + L + +G + + + Sbjct: 516 FDRATTAYRGAVGRIIKVGGRMMVIYLAMLVCAGWILWRMPTSFLPNEDQGILTVEIQLG 575 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + +E ++ + + + L + G + R ++ Sbjct: 576 PGSTETETLKIVEQVERYFLENEKENVHGMMLTLGRASGGKGQSTARGNIRLRDWSERKD 635 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 P Q + +I + Sbjct: 636 PERRAQAIIDRANQAFSSIINARV 659 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 75/192 (39%), Gaps = 16/192 (8%) Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV----GVIISAIAMLIY 683 S A E + E+V P + I+ I+ ++ + + + Sbjct: 295 SDANALNTSNAVAAFIEDMRPYFPHGVEVVSPYDTVPFIKISIIEVVKTLLEAIVLVFAV 354 Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742 I++ + + + + + + T G A FG N + ++ IG V+D +VV + Sbjct: 355 IYLFLQNFRATIIPSLAVPVVLLGTFGVMAAFGFSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 743 ---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGS 796 R+ + + R+ K++ + G + + +PMA +G G++ Sbjct: 415 NVARVMEE-----DGLPPREATIKTMGQITGALIGVAAVLSAVFVPMAFFGGTVGAIYRQ 469 Query: 797 FAIPMAFGIVVA 808 F++ + ++++ Sbjct: 470 FSLTIVSAMILS 481 Score = 61.6 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 69/214 (32%), Gaps = 9/214 (4%) Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 G + + ++G ++ + G S + Sbjct: 806 YGPMQLERYNGVSAVRIQGRAAAGMSSGTAMLEMERLMGELPEGIGYQWTGMSFQERLSG 865 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 + + +++ + + + W L I + L + L + G+ ++ Sbjct: 866 SQAPFLYALSILVVFLCLA---ALYESWSIPLSVILVVPLGVLGALVATSARGLSNDVYF 922 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 +L IG + + +++ + R+ L+ S D ++ L + TS+A I Sbjct: 923 QIGLLATIGLAAKNAILIVEFARE---LFQQGASLADAAMEAARLRLRPILMTSLAFLIG 979 Query: 783 VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813 VLP+A+ G + + G A I Sbjct: 980 VLPLAISTGAGSGSQNAIGTGVMGGTFAATVLGI 1013 >gi|206564391|ref|YP_002235154.1| multidrug efflux system transporter protein CeoB [Burkholderia cenocepacia J2315] gi|198040431|emb|CAR56416.1| multidrug efflux system transporter protein CeoB [Burkholderia cenocepacia J2315] Length = 1066 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 68/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I G++ + +P +P + I Sbjct: 10 RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + +E + ++ N IT++F + V + Sbjct: 56 PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 +L D ++ + T ++ + D++ + Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 Q + DP ++ Q + + N + G Q Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQL 235 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + + I + Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDIARIQLDASEYGLRS 282 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L + + + A L+ + S Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV+IV+ + + + L+ ++ +++I T +LL G ++ S+ G+V Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLAFGYSINALSLFGMV 402 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480 L IG+ VD I+V E + + + I +T + V L F Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462 Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G + FA+T+ +S +IS F ++++ A+ +++ K + + L Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522 Query: 539 AIQFMRAR 546 + R Sbjct: 523 GFNKVFHR 530 Score = 56.2 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L I + + I L L + N+ ++ L+G S + +++ + R+ Sbjct: 902 SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L + + ++ L + TS+A + V+P+ G + + + + FG+ Sbjct: 960 -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018 Query: 806 VVAASSSIFIAAPILLFIY 824 + + + + + Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037 Score = 52.4 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 89/254 (35%), Gaps = 14/254 (5%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + V ++ +R + V + ++ + V+K Sbjct: 252 IVVKTTPDGGVTHLRDIARIQLDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695 + E+ + + +R I V+ + + A+ + + W +L Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 370 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 + + + I T FG N ++ ++ IG V+D +VV + + +N+ + Sbjct: 371 PLIAVPVSIIGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGM 427 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811 + R K++ E G + ++V + G FA+ +A V++A + Sbjct: 428 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486 Query: 812 SIFIAAPILLFIYD 825 S+ ++ + + Sbjct: 487 SLTLSPALSAILLK 500 >gi|118578772|ref|YP_900022.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pelobacter propionicus DSM 2379] gi|118501482|gb|ABK97964.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pelobacter propionicus DSM 2379] Length = 1054 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 72/689 (10%), Positives = 172/689 (24%), Gaps = 47/689 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L Q + ++P+ P + + Sbjct: 8 RPIFAWVIAIIIMLAGILAI-----KQLPVAQYPAIAPP---------QVSINATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ + + + + ITL+F +V LQ Sbjct: 54 AKTIEDTVTQVIEQKMNGIDNLTYMSSTSDSSGSVTITLTFNAGTDPNIAQVQVQNKLQL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L ++ + T + +++ + + S +D + Sbjct: 114 ATPLLPQAVQQQGIKVTKSTKNFLMVVGFVSEDGSMTRFDLSDYAAANVLDIVSRLPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP +L T + N G Sbjct: 174 ETQMFGSQ-YAMRIWLDPHKLHNYNLTPNDVKSAIKAQNVQVSAGQLGGNPSPQGQQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + I Sbjct: 233 TITAQTLL-------------KTPEEFGAIILRTNSDGSSVHLRDVARSELGSEDYSSMA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + T + A L + S Sbjct: 280 RFNGKPAAGMAIKLATDANALDTAKVVKDKLAELSKFFPSGMKVVYAYDTTPFVKISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +++F+ + + L+ ++ + ++ T +LS G ++ ++ V Sbjct: 340 VVKTLGEAVVLVFLIMFLFMQNIRATLIPTIAVPVVLLGTFGVLSACGFSINTLTMFATV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + S + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERIMTEEGLSPKEATRKSMRQITGALVGIALVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSI 523 G R F+IT+ ++++S+ A+++ A+ + + Sbjct: 460 SGSTGVIYRQFSITIVSAMVLSVLVAMTLTPALCATLLKPVEKGHVAADSGWFSGFFRWF 519 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + F + + V + + + L + +G + V Sbjct: 520 NAWFDRGREKYEEMVGRSFGKPVRYLVVYGAIVTAMVLFFLRMPTAFLPDEDQGMLFSMV 579 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L+ ++ + Q E F V G+ +K Sbjct: 580 QLPVGATQERTLEVLKDVENHFLVDQKEAVESLFTVAGFSFAGNGQNMGLAFVKLKDWEL 639 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 P ++ Sbjct: 640 RQRPDLRVKAVAGKAMAAFSGFRDAQAYA 668 Score = 74.0 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + + + +++ +V++ ++++ P Sbjct: 260 VHLRDVARSELGSEDYSSMARFNGKPAAGMAIKLATDANALDTAKVVKDKLAELSKFFPS 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 + I + + + + + + + +++ + L + + + T Sbjct: 320 GMKVVYAYDTTPFVKISIEEVVKTLGEAVVLVFLIMFLFMQNIRATLIPTIAVPVVLLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G + G N + A + IG V+D +VV + + + +S ++ KS+ + Sbjct: 380 FGVLSACGFSINTLTMFATVLAIGLLVDDAIVVVENV--ERIMTEEGLSPKEATRKSMRQ 437 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA + GS F+I + +V++ ++ + + + Sbjct: 438 ITGALVGIALVLSAVFVPMAFFSGSTGVIYRQFSITIVSAMVLSVLVAMTLTPALCATLL 497 Query: 825 D 825 Sbjct: 498 K 498 Score = 64.3 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 9/218 (4%) Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 + Q PG S + + + + +I+ Sbjct: 827 MEILGQPAPGKSTGVAMAEMEKMAEKLPAGIGFEWTGLSYQERQAGAQAPALYAISLIVV 886 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 + + + W I L L I + G+ ++ +LT +G S + Sbjct: 887 FLCVA---ALYESWTIPFVNILMLPLGIVGAVMATTARGLSNDIYLQIGLLTTMGLSTKN 943 Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793 +++ +++ M + + ++ L + TS+A F LP+A+ G Sbjct: 944 AILIIQFIKEQMHQ---GLGLTEATRAAVKTRLRPVIMTSLAFFFGTLPLALTKGAGAGA 1000 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + G++ A + + + + Sbjct: 1001 QNAIGTAVTGGMLSATFIDLIFIPFFFVLVSRLFGRKN 1038 >gi|229590668|ref|YP_002872787.1| putative multidrug resistance protein [Pseudomonas fluorescens SBW25] gi|229362534|emb|CAY49441.1| putative multidrug resistance protein [Pseudomonas fluorescens SBW25] Length = 1036 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 76/681 (11%), Positives = 184/681 (27%), Gaps = 41/681 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I G L L + + ++P P + + Sbjct: 8 RPNFAWVIALFIVLAGALT-----LGRLPVSQYPDVAPP-------------QISVSASY 49 Query: 63 DDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118 + +E + L + T++F + V Sbjct: 50 PGASAQIINLNVTSLLEEELNGLPDLLYYESTSANGSADTTVTFKPGTDPDRAQIDVQNR 109 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 LQ V +L + L + +++ + ++ + R ++I Sbjct: 110 LQRVVGRLPQAVIEQGLKVEQVRANFLMIYALSYTDEQQDSVGLADFAARAVNNEIRRVA 169 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + + DP+ L + A +S N G R Sbjct: 170 GVGRVEMY-TAERAMRIWVDPAELVGYGLSMADVSKAIAAQNVQVPAGSMGERPGPVDQQ 228 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 V + ++ + + + Sbjct: 229 ITATVMVQGQLESVE-------------AFGNIVLRANDDGASVRIHDVARVELGRQDYR 275 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 L + + T + L + V + Sbjct: 276 FDARLNGKPVAAMSVQLAPGGNALQTAQAVKARLEHLSSTLPGNMRLSVPYDTAPFVQAA 335 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 T LV +V+++ + ++ L+ + + + TLA++ +LG ++ + ++ Sbjct: 336 IKQVVYTLIEAMVLVFLVMWLFLQKLRYTLIPAVVVPVCLSGTLAVMGVLGFSINMMTLF 395 Query: 419 GIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ VD I+V E + +++ S + + I + + L Sbjct: 396 GMVLAIGMLVDDAIVVVESVERLISQERLSPKDATRKAMRQISGAIVGITLVLATVFLPL 455 Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMM-IFIIRYKKMKSIDINPLSRFFL 533 F GG + FA+ + +SIL S F A+++ A+ + + + + L Sbjct: 456 AFMGGSVGVIYQQFALVLSVSILFSGFLALTLTPALCAALLKPFDPTRRVPGFNRHFDRL 515 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + R + + + ++ +L H L V + + Sbjct: 516 TAHYERVAGTWVRRGTRSVCLYLLLLAVLVLAYHRLPSSFIPSEDQGYTVTDIQLPPAAS 575 Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653 ++ + L L + A + + K + + Sbjct: 576 AARTEVTVNAWEQYALAQPATHQVLSILGFSFSGEGANAALSYISLKDWSVRGSDQASRA 635 Query: 654 TEIVGPKISRELIRKGIVGVI 674 + ++ + + Sbjct: 636 VAQRATRAFEDVSDGSVFSTV 656 Score = 87.4 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 96/249 (38%), Gaps = 6/249 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V + V Q + + G+++ + ++ + ++ +P Sbjct: 259 VRIHDVARVELGRQDYRFDARLNGKPVAAMSVQLAPGGNALQTAQAVKARLEHLSSTLPG 318 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707 + + + I++ + +I + + + + +W+ K + L + + ++ T Sbjct: 319 NMRLSVPYDTAPFVQAAIKQVVYTLIEAMVLVFLVMWLFLQKLRYTLIPAVVVPVCLSGT 378 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 L + G N+ + ++ IG V+D +VV + + + +S +D K++ + Sbjct: 379 LAVMGVLGFSINMMTLFGMVLAIGMLVDDAIVVVESV--ERLISQERLSPKDATRKAMRQ 436 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ LP+A GGSV FA+ ++ I+ + ++ + + + Sbjct: 437 ISGAIVGITLVLATVFLPLAFMGGSVGVIYQQFALVLSVSILFSGFLALTLTPALCAALL 496 Query: 825 DWRAKNARI 833 R+ Sbjct: 497 KPFDPTRRV 505 Score = 53.9 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 56/144 (38%), Gaps = 6/144 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 W + + + + ++ + G+ ++ ++T+IG S + +++ + + Sbjct: 882 SWAIPFAVLLIVPVGVLGSVAAVTVMGMPNDVYFKVGLVTIIGLSAKNAILIVEFAK--- 938 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L+ S + ++ + TS+A + V+P+A+ G + + + G+ Sbjct: 939 ALHAQGASLANAAIQAARLRFRPIIMTSLAFILGVVPLALATGPGAASQQAIGTGVIGGM 998 Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829 + A + + + + + Sbjct: 999 LAATVLGVLWVPVLFVKVMSVSQR 1022 >gi|149177810|ref|ZP_01856409.1| protein-export membrane protein secD [Planctomyces maris DSM 8797] gi|148843300|gb|EDL57664.1| protein-export membrane protein secD [Planctomyces maris DSM 8797] Length = 991 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 119/256 (46%), Gaps = 18/256 (7%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 D S + Q+ ++ + ++ Q G + + + + + Sbjct: 718 TNADGSDKYDRIPEFQLQGVADSKEEEADKRFKKMTMQAGPDLLEDDLKTALAAMQDVMA 777 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705 + + ++ E+ ++ ++IS IA++ YIW RF + F L A+ L+ D+ Sbjct: 778 TTAILDEVNSFDSSVASEMQESALLAMLISLIAIVAYIWFRFQRITFGLAAVAALVHDVL 837 Query: 706 KTLG---------------FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 LG L + NL +AA LT++GYS+ND +VV+DR+R+ Sbjct: 838 VVLGMVALGAYLSDTALGPILGLNDFKINLPMIAAFLTIVGYSLNDTIVVFDRIREVRGK 897 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 + +++ S+N+TL R++ TS+ I VL + GG I FA + G++V Sbjct: 898 NPALTT--SMVNDSLNQTLSRTLLTSITTLIVVLILYAIGGEGIHGFAYCLVLGVIVGTY 955 Query: 811 SSIFIAAPILLFIYDW 826 SSIFIA+P+L+++ + Sbjct: 956 SSIFIASPVLIWLMNR 971 Score = 163 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 140/619 (22%), Positives = 251/619 (40%), Gaps = 68/619 (10%) Query: 11 YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD----EDDFV 66 ++ ++ A P + + A I LG+DL GGS++V EVD E + Sbjct: 60 IGLVLFTAVIAATPFVWQVTHGHDWRDA-----IRLGIDLAGGSNMVFEVDESQSEKELS 114 Query: 67 NGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125 N + + + G ++R QN+I + + ++ Sbjct: 115 NEVMDQMVGAIGRRINPSGTEEVTVRKVGQNRIEVIVPGADSED---------------- 158 Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185 + + + I + + E+ R + E R Sbjct: 159 ---------VQRIKSLITRLGSLEFAIVANRRD-RDHADEVAR----ALENPEKKDIRDK 204 Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245 R++ + + ++ V + +G + + D Sbjct: 205 EGRVVASWREVKGDDKYE----GVDQIVARPVTREDGTQGEEVLILIEPNEDR------- 253 Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN-----IGKPLAVVLDG 300 ++G +L + + P V F+ G F +T N + VL Sbjct: 254 --RVTGKYLVR-ASQTTDQNGGPAVRFVFNAKGGSLFGTLTSKNRPSKDGFERHLAVLLD 310 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL--NIVEERNVGADLGS 358 + + + S + ISG FT + L +L AG+L + L V E ++ LGS Sbjct: 311 GKVQSAPSIRDTISTEGIISGRFTQKEVNELLNVLNAGALEVPLKPEPVSEFSISPLLGS 370 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 D KG AI+ +++FM++ Y G+VA+ + LN++L + +S + AT TLP +A Sbjct: 371 DVQEKGKQAILIAACAVIIFMLIYYRFAGVVANICLTLNLLLVMGCMSFIDATFTLPGLA 430 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 G+VL IG+AVD+N+L+ ERIREE + S+ +++ GFSRA++TI D+N+T LI VVL+ Sbjct: 431 GLVLTIGMAVDANVLIFERIREEKARGSSLRMAINNGFSRAFTTIVDANLTTLIVAVVLY 490 Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G VRGFA+T+ + I++SMFTA+ + R R + + + + I Sbjct: 491 IIGTDQVRGFAVTLFIGIVMSMFTALYVGRLFFDIFERKRWITDLKM------MSIVGTT 544 Query: 539 AIQFMRARFWGVGISILFSICSICLLFTH-GLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597 + F+ + S + + ++ T N IDF GG + ++ VR Sbjct: 545 NLDFIGKKMIAAFFSGALIVIGLIVVVTRGQENLDIDFTGGTMVTFEFEDKQEIDDVRGL 604 Query: 598 LESLQIGDISFQNFDGEKN 616 L+ ++ + + Sbjct: 605 LQGPFGNSLTIEQLQLSND 623 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 96/246 (39%), Gaps = 4/246 (1%) Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 + + +L L G + + + +L ++ Sbjct: 289 TLTSKNRPSKDGFERHLAVLLDGKVQSAPSIRDTISTEGIISGRFTQKEVNELLNVLNAG 348 Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701 E+ + + P + ++ KG ++I+A A++I++ I +++ + A L Sbjct: 349 ALEVPLKPEPVSEFSISPLLGSDVQEKGKQAILIAACAVIIFMLIYYRF-AGVVANICLT 407 Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 L++ +G + F L +A ++ IG +V+ V++++R+R+ S R I Sbjct: 408 LNLLLVMGCMSFIDATFTLPGLAGLVLTIGMAVDANVLIFERIREE---KARGSSLRMAI 464 Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + + V ++ I + + + G + FA+ + GIV++ +++++ Sbjct: 465 NNGFSRAFTTIVDANLTTLIVAVVLYIIGTDQVRGFAVTLFIGIVMSMFTALYVGRLFFD 524 Query: 822 FIYDWR 827 R Sbjct: 525 IFERKR 530 >gi|33603251|ref|NP_890811.1| hypothetical protein BB4276 [Bordetella bronchiseptica RB50] gi|33577375|emb|CAE34640.1| probable membrane protein [Bordetella bronchiseptica RB50] Length = 1028 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 68/533 (12%), Positives = 158/533 (29%), Gaps = 39/533 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L +I IGL+ + + +P + Sbjct: 9 RRPVFASVLSLIIVLIGLIS-----YTRLSVREYPKIDEPIV---------SVDTTYKGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + ++ + ++ + R ++ I + F+ SR + A +V + Sbjct: 55 SPEVIESQVTKPLEDQLAGIEGVDVMTSRSRSERSLINIKFSLSRDPDAAAAEVRDKVSR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + ++ I+ AI+ S I R ++ + Sbjct: 115 ARRFLPDEIDEPIIGKVEADSQPIIYIAVES--GSYSAIQTSDYINRYIKTRLSVLPGAA 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + L + D +L T + N R S + Sbjct: 173 EVRVFGERLPSMRIYVDRDKLAAYGLTVQDVEAALRSQNVEIPAGRIESRAREFSVVSST 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 ++ + D+ + + A Sbjct: 233 DLQTPAQFE--------------------DVVVANVKGYPVRLRDVAKVEIGAANDRVLS 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + ++ + + L + + S Sbjct: 273 RYNGRSAINIGLTRQSTANPLELSKAVRAEIVQLNQSLPAGMKLNIAYDSSVFIERSIDS 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++V+F + + ++ +I ++++ AL+ L G ++ ++ +V Sbjct: 333 VFKTIGEAIILVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMV 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IGL VD I+V E I + + G + +T + L F Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGMPRKQAAFQGSREIGFAVVAMTLTLVTVYAPLAFAT 452 Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 G R FA+ + ++L+S F A+++ M ++R++ + N + + Sbjct: 453 GRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQHSHNRWYNLIEGW 505 Score = 83.2 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 76/216 (35%), Gaps = 7/216 (3%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + + + ++ + ++ + +P N I + + I + Sbjct: 285 TRQSTANPLELSKAVRAEIVQLNQSLPAGMKLNIAYDSSVFIERSIDSVFKTIGEAIILV 344 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 ++ I+ + ++ I T+ + + LFG N + A++ IG V+D +V Sbjct: 345 VLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMVLAIGLVVDDAIV 404 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---S 796 V + + + + + + E V ++ P+A G Sbjct: 405 VLENI---FRHIEEGMPRKQAAFQGSREIGFAVVAMTLTLVTVYAPLAFATGRTGRLFIE 461 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 FA+ +A ++V+ ++ + + + + + R Sbjct: 462 FALALAGAVLVSGFVALTLTPMMCSVLLRHQHSHNR 497 Score = 48.5 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 G + ++ + IY+ + W + ++ L +T L L G ++ + Sbjct: 845 SGSIYLVFAMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQI 904 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 ++TL+G +++ + +L + + + ++ L + T+ A + + Sbjct: 905 GLITLVGLITKHGILIVEFAN---QLRDQGKAMHEAVVEASVLRLRPILMTTGAMVLGTV 961 Query: 785 PMAVWGGS 792 P+A+ G+ Sbjct: 962 PLALAQGA 969 >gi|117922476|ref|YP_871668.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella sp. ANA-3] gi|117614808|gb|ABK50262.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Shewanella sp. ANA-3] Length = 1044 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 70/574 (12%), Positives = 154/574 (26%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L + ++PS P +V+ + Sbjct: 8 RPIFAWVIALIIMLAGVLSI-----RSLPVSQYPSIAPPT-------------VVISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + +K I S ITL+F + +V Sbjct: 50 PGASAKIVEDSVTQVIEQRMKGIDHLRYIASTSDSFGNASITLTFNAEADPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQG + L + + + +++ + + + D + Sbjct: 110 KLQGAMTLLPQEVQSQGVNVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANIQDPMSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L Q T+ + N G Sbjct: 170 PGVGEIQIFGAQ-YAMRIWLDPLKLTQYNLTSLDVVSAIRAQNAQVSAGQLGGTPSLPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + I + F + Sbjct: 229 ELNATVSAQSRL-------------QTPEQFRKIIIKSDTSGANVFLGDVARVELGSESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E LR + Sbjct: 276 AVESLYNGKPASGIAIKLATGANALDTAEAVRAKVEELRPFFPAGLDVVYPYDTTPFVEK 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +++++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSATGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + +T V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G R F+IT+ ++ +S+ A+ + A+ +K + Sbjct: 456 MAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPLKKGHGHIETG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F R S ++ + Sbjct: 511 FFGWFNRGFDRLTNRYESSVAGIIKRSFRVMMIY 544 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 29/250 (11%), Positives = 83/250 (33%), Gaps = 6/250 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + V L V + + + + +++ + +++ Sbjct: 255 TSGANVFLGDVARVELGSESYAVESLYNGKPASGIAIKLATGANALDTAEAVRAKVEELR 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + ++ + + + + +++ + + L + + Sbjct: 315 PFFPAGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T + G N + A++ IG V+D +VV + + + +S + Sbjct: 375 VLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPLEATR 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+++ G V + +PMA GS F+I + + ++ ++ + + Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPAL 492 Query: 820 LLFIYDWRAK 829 + K Sbjct: 493 CATMLKPLKK 502 Score = 67.0 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 75/261 (28%), Gaps = 11/261 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + V S + + N N Sbjct: 774 QYRMQPEDLDTWYVRNNKGDMVPFSAFATGAWEYGSPRLERFNGLPAMNIQGATAPGFST 833 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + +MVK+ + E + + I + L+ + Sbjct: 834 GAAMNIMEDMVKQLPPGFGIEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 888 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W I + L I L G+ ++ +LT +G + + +++ + ++ Sbjct: 889 ESWSVPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 948 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 Y + ++ L + TS+A + V+P+A+ G + + G Sbjct: 949 ---YEKGAGLIEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGG 1005 Query: 805 IVVAASSSIFIAAPILLFIYD 825 ++ + IF + + Sbjct: 1006 MMSSTFLGIFFVPLFFVIVER 1026 >gi|327539857|gb|EGF26460.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rhodopirellula baltica WH47] Length = 1052 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 68/544 (12%), Positives = 163/544 (29%), Gaps = 31/544 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I +G + + ++PS P + Sbjct: 10 RPIFASVLSFVIVLVGGI-----VYFTLPVSQYPSVAPPTVL---------VRASYPGAT 55 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + + ++ + + S ++T++F ++ V + Sbjct: 56 PEVIADTVATPIEQEMNGVDDMLYMESSSSSDGTMQLTVTFKLGTDLDDAQVLVQNRVAI 115 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S+L ++ + TT + +++ N + S + D + + Sbjct: 116 AESRLPEQVRQIGVTTTKQIPDMLMVVHLNSPDDSRDQLYISNYAFLRVRDALMRLDGVG 175 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + + D ++ + T ++ N + G ++ Q Sbjct: 176 EIRIAGGNEYAMRIWLDIEKMTHVDLTAGEVVDAIQAQNIQVAAGVIGQPPTDETGDFQL 235 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + + I R I Sbjct: 236 NVTTQGRL-------------IREDEFGDIIVKRGEDGRITRLRDVARIELGAQDYSRLS 282 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + + + T + + + + S + Sbjct: 283 YLDGKSAIAVLVYQRPGTNAVDTAAEVKRVMSEMSEEFPQGIGYEIAYNPTDYVEDSIAE 342 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T I V++ +F+ + + ++ +I +++I T A++ LG TL S+ G+V Sbjct: 343 VFETLFITTIFVVLTVFLFLHGWRPTIIPVIAIPISLIGTFAVMQFLGVTLNTLSLFGLV 402 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IG+ VD I+V E + + + + S + + + + V F Sbjct: 403 LAIGIVVDDAIVVVENVERLIAEGMTAREATHKAMDEVGSALIATTLVLIAVFVPTVFVP 462 Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G + FA+T+ +S IS F ++++ A+ ++R K I F Sbjct: 463 GISGQFYQQFALTISISTAISTFVSLTLSPALCALLLRPKNAPKNRIGKAIDFLFGWFFR 522 Query: 539 AIQF 542 Sbjct: 523 LFNR 526 Score = 66.6 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 78/216 (36%), Gaps = 10/216 (4%) Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 + RV+ + ++ + + N E+ + I + + Sbjct: 300 TNAVDTAAEVKRVMSEMSEEFPQGIGYEIAYNPTDYVEDSIAEVFETLFITTIFVVLTVF 359 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +++ W + + + + + T G+ N ++ ++ IG V+D +VV Sbjct: 360 LFL---HGWRPTIIPVIAIPISLIGTFAVMQFLGVTLNTLSLFGLVLAIGIVVDDAIVVV 416 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFA 798 + + +L ++ R+ K+++E + T++ +P G FA Sbjct: 417 ENV---ERLIAEGMTAREATHKAMDEVGSALIATTLVLIAVFVPTVFVPGISGQFYQQFA 473 Query: 799 IPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833 + ++ ++ S+ ++ + L + A RI Sbjct: 474 LTISISTAISTFVSLTLSPALCALLLRPKNAPKNRI 509 Score = 62.0 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 63/213 (29%), Gaps = 9/213 (4%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + +E + + + ++ + V+ +A+ Sbjct: 837 TTVPGFSTGQSLSTMEQLADQNLPPGFGYEWTEIAFQERQAGNTIVFLFPLAVLFVFLAL 896 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 W L I + L + L G++ N+ + LIG + + +++ Sbjct: 897 S---AQYESWLLPLAIILIVPLCLLFALSGVWFRGMDNNVLTQIGFIVLIGLACKNAILI 953 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797 + + D + L + T+ + + V+P+ V G + Sbjct: 954 VEFAKAEEDAGKNRF---DAAIAACRLRLRPILMTAFSFILGVVPLLVATGAGFEMRRVL 1010 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 + G++ +F+ + + + K Sbjct: 1011 GTAVFAGMLGVTVFGLFLTPVFYVMLRRFAKKK 1043 >gi|290961825|ref|YP_003493007.1| protein-export membrane protein [Streptomyces scabiei 87.22] gi|260651351|emb|CBG74473.1| protein-export membrane protein [Streptomyces scabiei 87.22] Length = 368 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 145/309 (46%), Gaps = 11/309 (3%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L + F+ R G+SIL +I +I L GL+ GI+F+GG + + Sbjct: 10 RLHRGEVGYDFVGHRKIWYGVSILITIAAIAGLGIRGLSMGIEFQGGAVFTTP-KTSISV 68 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + ES D Q +R+Q ++ +V + + Sbjct: 69 AQAEKYAESASGHDAIVQKLGTGSEGSLRIQISGIETAQADKVSAQLADDM---NMKPED 125 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 E+VGP ++ K G++I + ++IY+ I F+W A+ A LI DIT T+G + Sbjct: 126 VAGELVGPSWGDQIASKAWQGLVIFLVLVVIYLAIAFEWRMAIAAFVALIHDITITIGIY 185 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769 AL G E V +LT++GYS+ D VVV+D +++ K T ++ ++ ++SIN TL Sbjct: 186 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDITKQTRWTYAEIANRSINSTL 245 Query: 770 GRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 RS+ T++ A + V + GG V + ++ + G+ A SSIFIA P++ + Sbjct: 246 VRSINTTVVALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLK 305 Query: 825 DWRAKNARI 833 + + + Sbjct: 306 EREPQLKAL 314 >gi|254718487|ref|ZP_05180298.1| Acriflavin resistance protein [Brucella sp. 83/13] gi|265983456|ref|ZP_06096191.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. 83/13] gi|306838294|ref|ZP_07471140.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. NF 2653] gi|264662048|gb|EEZ32309.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. 83/13] gi|306406585|gb|EFM62818.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. NF 2653] Length = 1051 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 69/565 (12%), Positives = 158/565 (27%), Gaps = 39/565 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ GL+ + ++P P +V+ Sbjct: 8 RPVFAAVISIILVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117 + L + E + + + ++T++FA + V Sbjct: 50 PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 +Q S L + ++ + + + + +D + Sbjct: 110 RVQRATSSLPQEVQRLGVTVNKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 I + P +L Q T + + N FG + + Sbjct: 170 PGVGDVQLLGNIDYSMRIWLRPDKLTQYNLTPSDVFAAIQEQNAQFAAGRFGDQPDPHAG 229 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + A + Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 L L + + T+E L+A + Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV++V+F+ + + L+ ++ +++I T A + +LG ++ L ++ Sbjct: 338 SIEEVIHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IG+ VD I+V E + + S + + + + Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457 Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F G G + FA+T+ +S+ +S A+++ A+ I++ + I + Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517 Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558 F L Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542 Score = 78.6 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + +K + + +T E+I I +I+ + + I++ Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVIHTFIEAIILVVLVVFIFLQ 362 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L + + + I T + G NL + ++ IG V+D +VV + + Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802 + T +S R K++ E G + + +P+A G G + FA+ +A Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477 Query: 803 FGIVVAASSSIFIAAPI 819 + ++ ++ + + Sbjct: 478 ISVTLSGLVALTLTPAL 494 Score = 67.0 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 7/167 (4%) Query: 668 KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726 G +I I + + + ++ +W L IT + I L L G+ ++ + Sbjct: 869 TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGL 928 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 +TLIG + + +++ + + + S + + V TS+A + V+P+ Sbjct: 929 VTLIGLAAKNAILIVEFA---VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPL 985 Query: 787 AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 AV G + S + G++ A + F I K Sbjct: 986 AVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKK 1032 Score = 50.1 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62 +I GLL + + P +G G ++ Sbjct: 532 LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580 Query: 63 DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111 + L S+ +R + + ++ + + D + Sbjct: 581 LERTTVVLNQASENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640 Query: 112 ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167 A + + G+N+ + ++ + + Q+ + + + I Sbjct: 641 ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700 Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227 E R + Q + D + + + + Sbjct: 701 E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751 Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287 V D + + + + + F + + Sbjct: 752 ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799 Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 K + A + + + I+ +AA + I Sbjct: 800 LVTVKRIVGPDQLECFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405 + V G+ A++ GL+++ L + Y L ++ + L Sbjct: 860 AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 L G T + G+V IGLA + IL+ E E +S + + I Sbjct: 914 DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973 Query: 466 SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 +++ ++ V L G + + +L + F A + I R K Sbjct: 974 TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033 >gi|323143184|ref|ZP_08077880.1| putative ATP synthase F0, A subunit [Succinatimonas hippei YIT 12066] gi|322417025|gb|EFY07663.1| putative ATP synthase F0, A subunit [Succinatimonas hippei YIT 12066] Length = 1095 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 67/529 (12%), Positives = 160/529 (30%), Gaps = 41/529 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I GL L + ++P+ P + + Sbjct: 8 RPIFAWVIAIVIMLAGLFAVL-----TLPISQYPTIAPP-------------SVSIRSSY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S + IT++F + +V Sbjct: 50 PGADATTVERSVTQIIEQNMTGLDGYMYMSATSDSYGNSDITITFEPGTNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ S+L + N + T +++ I + S I + + Sbjct: 110 KLQQTQSQLPETVQSNGVDVTKSTNAFLMVVGLTAIDGIHDNTDLSDYIYANIREPMARV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + + DP +L L T +++ N G Sbjct: 170 QGVGDLMVFGS-EYAMRIWLDPEKLNNLGVTVTEVTTAITAQNAQVTYGSLGGTPAVPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Y + + + + + + + I Sbjct: 229 QYAYTITGQSRLQNVE-------------QFENILIRVNQDGSKIHLKDIARIELGSESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T + L L Sbjct: 276 QVRGSYNHLPSSGIAIRLSSGANALDTAKRVKTLINDLSQYFPEWIEVNYPYDTTDFINI 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S + T LV+I++++ + + L+ ++ + ++ T A++S+ G ++ ++ Sbjct: 336 SINEVFHTLIEAIILVVIIMYVFLQNIRATLIPTITVPVVLLGTFAIMSVFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + +N + + + + + + Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERIIHEENLPPKEATERSMDQITGALIGIALVLSAVFIP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522 + FFGG R F+IT+ ++ +S+ A+ + A+ I++ K ++ Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMTLSVLIALILTPALCATILQGKDHRN 504 Score = 80.5 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 85/207 (41%), Gaps = 7/207 (3%) Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 + ++ + +++ P N I + +I + I ++I +++ + Sbjct: 301 DTAKRVKTLINDLSQYFPEWIEVNYPYDTTDFINISINEVFHTLIEAIILVVIIMYVFLQ 360 Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L T+ + + T ++FG N + ++ IG V+D +VV + + Sbjct: 361 NIRATLIPTITVPVVLLGTFAIMSVFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ER 418 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805 ++ ++ ++ ++S+++ G + ++ +PMA +GGS F+I + + Sbjct: 419 IIHEENLPPKEATERSMDQITGALIGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 478 Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNA 831 ++ ++ + + + +NA Sbjct: 479 TLSVLIALILTPALCATILQGKDHRNA 505 Score = 64.3 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 76/246 (30%), Gaps = 20/246 (8%) Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655 ++ E + + + +E + ++ + Sbjct: 821 ASTEWTFGSPRLERYNGVGAMNIQGAPAPGVSTGEAMNEMERIAAEVLPPGYSISWTGVS 880 Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714 ++ V +++ + + + W ++L + A Sbjct: 881 YQERLSGQQAPMLYAVSILVVFLCLA---ALYESWSIPFA--VMMVLPLGIIGAVLAALI 935 Query: 715 --------GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766 + ++ +LT +G S + +++ + ++ LY + + ++ Sbjct: 936 TQYVPVRTVLTNDVYFQVGLLTTVGLSAKNAILIVEFAKE---LYDKGARLTEAVIEAAK 992 Query: 767 ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 L + TS A + VLP+AV G + I + G++ A +IF + I Sbjct: 993 IRLRPILMTSAAFILGVLPLAVSSGAGAAGRNEIGICVIGGMLSATVLAIFFVPVFFVLI 1052 Query: 824 YDWRAK 829 + K Sbjct: 1053 MRYFTK 1058 >gi|284991596|ref|YP_003410150.1| protein-export membrane protein SecF [Geodermatophilus obscurus DSM 43160] gi|284064841|gb|ADB75779.1| protein-export membrane protein SecF [Geodermatophilus obscurus DSM 43160] Length = 453 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 135/314 (42%), Gaps = 14/314 (4%) Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580 + L + + I+ + + I + G N+GIDF GG Sbjct: 41 RRPRHRGSLSHRLYNGEAGLDVVGRSRLIYRITAVVVLLCIAAMVFRGFNFGIDFAGGNS 100 Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 L + +++ G L+R ++ Sbjct: 101 L--RLPGGAEQLAEVEEAAEEAGAEVASAQVVGGNALLLRTGALDNETERAVVDAVAAAA 158 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700 +T + E V P+ +++ R+ +V + + +A+++++ +RF+ A+GAI L Sbjct: 159 GVTPS-----QVSPEAVSPEWGQDITRQALVALAVFLVAVVLFLAVRFQPKMAIGAIAAL 213 Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFR 758 + DI T G +AL G E + V LT++G+S+ D VVV+D++ +N+K +++ Sbjct: 214 VHDIVVTAGVYALVGFEVTPSTVIGFLTILGFSLYDTVVVFDKVDENVKDLDRSARMTWG 273 Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSI 813 + + ++N+TL RS+ TS+ A + V + G + A+ + G+ A SSI Sbjct: 274 EAANLAVNQTLMRSINTSVIALLPVAGLLFVGAGLLGVGTLKDLALVLFVGLAAGAYSSI 333 Query: 814 FIAAPILLFIYDWR 827 F+A PI+ + + Sbjct: 334 FLATPIVADLKERE 347 >gi|113972163|ref|YP_735956.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella sp. MR-4] gi|114049413|ref|YP_739963.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella sp. MR-7] gi|113886847|gb|ABI40899.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Shewanella sp. MR-4] gi|113890855|gb|ABI44906.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Shewanella sp. MR-7] Length = 1044 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 75/695 (10%), Positives = 178/695 (25%), Gaps = 57/695 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L + ++PS P +V+ + Sbjct: 8 RPIFAWVIALIIMLAGVLSI-----RSLPVSQYPSIAPPT-------------VVISANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + +K I S ITL+F + +V Sbjct: 50 PGASAKIVEDSVTQVIEQRMKGIDHLRYIASTSDSFGNASITLTFNAEADPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQG + L + + + +++ + + + D + Sbjct: 110 KLQGAMTLLPQEVQSQGVNVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANIQDPMSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L Q T+ + N G Sbjct: 170 PGVGEIQLFGAQ-YAMRIWLDPLKLTQYNLTSLDVVSAIRAQNAQVSAGQLGGTPSLPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + I + F + Sbjct: 229 ELNATVSAQSRL-------------QTPEQFRKIIIKSDTSGANVFLADVARVELGSESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + T E LR + Sbjct: 276 AVESLYNGKPASGIAIKLATGANALDTAEAVRAKVEELRPFFPAGLDVVYPYDTTPFVEK 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +++++ + + L+ ++ + ++ T A+LS G ++ ++ Sbjct: 336 SIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSATGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + +T V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + F G R F+IT+ ++ +S+ A+ + A+ + I Sbjct: 456 MAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCATMLKPLKKGHGHIETGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + +A R+ + + L + + +G + Sbjct: 516 NRGFDRLTNRYESSVAGIVKRSFRVMMIYAALVVAVGWIFMRMPTAFLPDEDQGILFTQA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + LE + + E Q + + + + Sbjct: 576 ILPTNSTQESTMKVLEKVSDHYM------AEDAVKSVFSVAGFSFAGQGQNMGIAFVGLK 629 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 + + + + + + + Sbjct: 630 DWSEREAPGMDVQSIAGRAMGVFSQMKEAFVFAFV 664 Score = 72.8 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 29/250 (11%), Positives = 84/250 (33%), Gaps = 6/250 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + V L+ V + + + + +++ + +++ Sbjct: 255 TSGANVFLADVARVELGSESYAVESLYNGKPASGIAIKLATGANALDTAEAVRAKVEELR 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + ++ + + + + +++ + + L + + Sbjct: 315 PFFPAGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T + G N + A++ IG V+D +VV + + + +S + Sbjct: 375 VLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPLEATR 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+++ G V + +PMA GS F+I + + ++ ++ + + Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPAL 492 Query: 820 LLFIYDWRAK 829 + K Sbjct: 493 CATMLKPLKK 502 Score = 66.6 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 75/261 (28%), Gaps = 11/261 (4%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 + + V S + + N N Sbjct: 774 QYRMQPEDLDTWYVRNNKGDMVPFSAFATGAWEYGSPRLERFNGLPAMNIQGATAPGFST 833 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 A + +MVK+ + E + + I + L+ + Sbjct: 834 GAAMNIMEDMVKQLPPGFGIEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 888 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 W I + L I L G+ ++ +LT +G + + +++ + ++ Sbjct: 889 ESWSVPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 948 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804 Y + ++ L + TS+A + V+P+A+ G + + G Sbjct: 949 ---YEKGSGLIEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGG 1005 Query: 805 IVVAASSSIFIAAPILLFIYD 825 ++ + IF + + Sbjct: 1006 MMSSTFLGIFFVPLFFVIVER 1026 >gi|117620943|ref|YP_857414.1| AcrB protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562350|gb|ABK39298.1| AcrB protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|156179563|gb|ABU54831.1| resistance nodulation cell division efflux pump [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1049 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 69/685 (10%), Positives = 183/685 (26%), Gaps = 43/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L + + + ++PS P G Sbjct: 8 RPIFAWVIALVIMLAGSLAII-----KLPVAQYPSIAPPAV---------GISASYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L +TL+F + +V LQ Sbjct: 54 AKTVEDSVTQIIEQNMTGLDHLLYMSSQSDSSGRVSVTLTFQPGTDPDIAQVQVQNKLQQ 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S L + ++ + ++++ + + ++ + + + Sbjct: 114 AMSLLPQEVQQQGIRVQKTSSSFLMVAAFISKDGAMTNDDLADYVVANIKEPLSRLDGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 DP++L ++ T + N G Sbjct: 174 DITLFGSQYSM-RVWLDPNKLNRVQMTPGDVQAAIKAQNTQVAFGKLGGTPAVSDQRFTA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + +S + + + + + Sbjct: 233 TIMGQTRLSTVE-------------EFNDILLRVNQDGSKVRLKDVARVELAGESYDAEA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T E L + S Sbjct: 280 LYNGQSTAAVAIKLATGANALDTAEKVRGKLNELSTYFPANMEIVYPYDTTPFVKISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV V+++ + + L+ ++ + ++ T ++S G ++ ++ G+V Sbjct: 340 VVQTLVEAIFLVFCVMYLFLQNFRATLIPTIAVPVVLLGTFGVMSAFGFSINTLTMFGLV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + ++ S + ++ + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERLMSEEDLSPLEATRKSMTQITGALVGIALVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527 GG R F++T+ ++++S+ A+ + A+ + + + Sbjct: 460 GGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCATLLKPIKHGEFGAKRGFFGWFNRAF 519 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 + + + +G+ + + ++ +I + + +G I V Sbjct: 520 DASANRYQSGVRKVVKQGVRYGIIYAAMLAVLAILFMRMPTSFLPEEDQGVIMSMVQLPV 579 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 L ++ + + + + V G +K P Sbjct: 580 GATKQRTEVVLADMRDYFMKNEKDNVDSVLTVAGFSFAGSGQNSGMAFIKLKDWKERNTP 639 Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672 + + + Sbjct: 640 DRSANAIIGRAMGYLFSIKEAQVFA 664 Score = 77.8 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 85/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + D + +++ + +++ Sbjct: 258 SKVRLKDVARVELAGESYDAEALYNGQSTAAVAIKLATGANALDTAEKVRGKLNELSTYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + + I + + ++ + + +++ + + L + + + Sbjct: 318 PANMEIVYPYDTTPFVKISIEEVVQTLVEAIFLVFCVMYLFLQNFRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G + FG N + ++ IG V+D +VV + + + +S + KS+ Sbjct: 378 GTFGVMSAFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ERLMSEEDLSPLEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +PMA +GGS F++ + +V++ ++ + + Sbjct: 436 TQITGALVGIALVLSAVFVPMAFFGGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 76.3 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 84/252 (33%), Gaps = 9/252 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V + + G + ++G + + PG S K Sbjct: 789 VRNSAGQMVPFSAFASTDWSFGSPRLERYNGVPAMEIVGEAAPGKSTGDAMAAIEQMVKQ 848 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + + L Sbjct: 849 LPEGIGIEWTGLSYQERQAGSQAPALYAISLLVVFLCLA---ALYESWSIPFSVMLVVPL 905 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + + L G+E ++ +LT IG S + +++ + ++ LY + + + Sbjct: 906 GVLGAIVAATLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKE---LYDRGMGLSEAVV 962 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A + VLP+ + G S + + G++ A +IF Sbjct: 963 EAARLRLRPILMTSLAFILGVLPLVISTGAGASSRNAIGTGVMGGMISATVLAIFFVPLF 1022 Query: 820 LLFIYDWRAKNA 831 + + + K++ Sbjct: 1023 FVLVMRYFTKHS 1034 >gi|108762794|ref|YP_632857.1| protein-export membrane protein SecD [Myxococcus xanthus DK 1622] gi|108466674|gb|ABF91859.1| protein-export membrane protein SecD [Myxococcus xanthus DK 1622] Length = 590 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 183/599 (30%), Positives = 292/599 (48%), Gaps = 88/599 (14%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR------------FPSAMPKNR--ISLG 47 R W L + + +P + +LDR P+ P + ++LG Sbjct: 3 RGWWWKFGLIVAVTLGCIWFLIPTYYSLVVLDREQRNNLAVLEERMPAWAPPAKYRLNLG 62 Query: 48 LDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF--ADS 105 LDL+GG H+V+ VD + + + ++ +++ + +G S K+ ++ D Sbjct: 63 LDLQGGIHMVMRVDTKTALQKRTERRAQQIVNYVNDKKLGEVSADTDPEKLEVTLTAKDP 122 Query: 106 RFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165 + I +V L+ ++ + + A++Q+M Sbjct: 123 GTMDAIQKEVLATFTDFKEVSRSGASLTLVQDESQANVF-----------RTEAVDQAML 171 Query: 166 IIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN---- 221 +IR+RID+ G++E +++LG+ I I LPG +P + ++L+GTTA++ F V +N Sbjct: 172 VIRRRIDKWGVAEVDVRKLGADSIQISLPGRSNPEQAKELVGTTAQLEFRMVDDSNPQFF 231 Query: 222 ----SKKGFMFGVRFLRDSDG--------------------------------------- 238 G ++G Sbjct: 232 AQLLQATPPPAGSEITLTTEGGFPQLQAPTREAITEYTKDKVPENRVVLTECIANPVKKN 291 Query: 239 -----NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 YL++ V ++G L A AN +P V+ISFD GAR F +T +G+ Sbjct: 292 ECTSYRSYLLDKNVPLTGESLASADANISQLN-EPEVNISFDPAGAREFERLTEQGVGRR 350 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISG--------NFTIETAGILAAMLRAGSLPIKLN 345 +A+VLD V TAP IN+ I G A+I+ + A LA +L+AG+LP + Sbjct: 351 MAIVLDENVQTAPNINEKISGGSARITMGRMGGRTFEEWLGEAQTLALVLKAGALPAPVT 410 Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405 + E R VGA LG + I KG A V GL L++LFM + Y GL+AD ++ LN +L LA L Sbjct: 411 VGEIRQVGASLGDELIRKGGMAAVLGLGLVILFMAIYYRASGLIADLALVLNGLLILAGL 470 Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465 + ATLTLP IAG VL +G+AVD+N+L+NERIREE +S ++D G+ RA+ TIFD Sbjct: 471 AFFNATLTLPGIAGFVLTLGVAVDANVLINERIREELGHGKSARAAVDQGYDRAFWTIFD 530 Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 S++TALI+ +LFF G G VRGFA T+ + +L S+FT+I++ R +M + + + K + Sbjct: 531 SHVTALISAFILFFTGTGPVRGFATTLIIGLLASLFTSITVTRVIMTYFVHGRNAKVVS 589 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 107/280 (38%), Gaps = 7/280 (2%) Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612 S+ + +I L +N D G + L + V + E++Q + Sbjct: 311 SLASADANISQLNEPEVNISFDPAGAREFERLTEQGVGRRMAIVLDENVQTAPNINEKIS 370 Query: 613 GEKNFLVRLQYQPGDSVA--QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670 G + + + K + T+ VG + ELIRKG Sbjct: 371 GGSARITMGRMGGRTFEEWLGEAQTLALVLKAGALPAPVTVGEIRQVGASLGDELIRKGG 430 Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730 + ++ +++++ I ++ L A L+L+ L A F L +A + + Sbjct: 431 MAAVLGLGLVILFMAIYYR-ASGLIADLALVLNGLLILAGLAFFNATLTLPGIAGFVLTL 489 Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790 G +V+ V++ +R+R+ + S R +D+ + + + A IS + G Sbjct: 490 GVAVDANVLINERIREEL---GHGKSARAAVDQGYDRAFWTIFDSHVTALISAFILFFTG 546 Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAK 829 + FA + G++ + +SI + I+ F++ AK Sbjct: 547 TGPVRGFATTLIIGLLASLFTSITVTRVIMTYFVHGRNAK 586 >gi|296113229|ref|YP_003627167.1| protein translocase subunit SecF [Moraxella catarrhalis RH4] gi|295920923|gb|ADG61274.1| protein translocase subunit SecF [Moraxella catarrhalis RH4] gi|326562867|gb|EGE13154.1| preprotein translocase subunit SecF [Moraxella catarrhalis 46P47B1] gi|326563691|gb|EGE13943.1| preprotein translocase subunit SecF [Moraxella catarrhalis 103P14B1] gi|326565230|gb|EGE15415.1| preprotein translocase subunit SecF [Moraxella catarrhalis 12P80B1] gi|326566459|gb|EGE16609.1| preprotein translocase subunit SecF [Moraxella catarrhalis BC1] gi|326571003|gb|EGE21027.1| preprotein translocase subunit SecF [Moraxella catarrhalis BC7] gi|326573301|gb|EGE23269.1| preprotein translocase subunit SecF [Moraxella catarrhalis 101P30B1] gi|326575802|gb|EGE25725.1| preprotein translocase subunit SecF [Moraxella catarrhalis CO72] gi|326576882|gb|EGE26788.1| preprotein translocase subunit SecF [Moraxella catarrhalis O35E] Length = 378 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 156/296 (52%), Gaps = 4/296 (1%) Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592 LI + I FM+ + S+L + + + GLN+G+DF GG+ V +PV+ + Sbjct: 60 LIANQRIIPFMKLEKPMIVFSVLSILIGLIAIIVKGLNFGLDFTGGVSANVAYEQPVEQA 119 Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V L D Q + LVRL Q G + + L+ + + STI Sbjct: 120 QVIKALADNGFNDAVVQYLGTRQELLVRLPPQDGSAENLSASLDQI---LNFPNNPSTID 176 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 + I+G ++ E+ ++ + ++ MLIY+ RF++ ALGA+ L D+ +G FA Sbjct: 177 SISIIGSQLGNEIYLNSLLAMSVALGMMLIYVATRFQFKLALGAVLALFHDVIIVVGIFA 236 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 + G F+LT +AAVL LIGYSVND +VVYDR+R+N + ++ R ++D S+ ETL R+ Sbjct: 237 IMGWPFDLTVLAAVLALIGYSVNDTIVVYDRIRENFRR-VRGLTPRQVLDLSLTETLRRT 295 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + T F+ V+ M GG + F++ + G++ SSI++A+ I L + R Sbjct: 296 IMTVGTVFVVVVAMLFLGGDGLYWFSVALFIGLIAGTYSSIYVASSIPLMMGLSRE 351 >gi|269101988|ref|ZP_06154685.1| inner membrane efflux transporter of RND family multidrug efflux pump [Photobacterium damselae subsp. damselae CIP 102761] gi|268161886|gb|EEZ40382.1| inner membrane efflux transporter of RND family multidrug efflux pump [Photobacterium damselae subsp. damselae CIP 102761] Length = 1036 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 70/685 (10%), Positives = 180/685 (26%), Gaps = 42/685 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G + L + ++P+ P + Sbjct: 8 RPIFAWVIAIIIMLAGTMAIL-----TLPVAQYPTIAPPAIQ---------ISATYQGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + L + ITL+F + +V LQ Sbjct: 54 AKTVEDSVTQVIEQNMTGLDNLMYMSSTSDSSGNASITLTFEAGTDPDIAQVQVQNNLQR 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S+L + ++ + + ++ + + + D + Sbjct: 114 ATSQLPTEVQQLGISVRKSTSSFMSVTAFVSTDNSMTGQDIMDYVSSRVKDPVSRVAGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP++L T + N G Sbjct: 174 DVMVFGTQ-YAMRIWLDPAKLNSYNLTPIDIVNAIRQQNTQVTVGQIGGAPAVKGQMINA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + + + + + Sbjct: 233 TITARNRLESVQ-------------QFKDILLRVNKDGSQIRIKDVARVELGGESSDFIT 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L A S Sbjct: 280 RFDGKPASGIGIKLATGANALDTQKAVDAKLEELSANFPQGLKMYKAMDTNPFVKLSIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + L+ ++ + ++ T +++ G T+ ++ G+V Sbjct: 340 VVSTLFEAIVLVFLVMYLFLQNIRATLIPTIAVPVVLLGTFGVMAACGFTINTLTMFGLV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + S + + + + V + F Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPVEATKKSMGQISGALVGVAMVLSAVFVPMAFM 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528 G R F++T+ ++++S+ A+ + A+ + + + Sbjct: 460 TGSTGAIYRQFSLTIVAAMVLSVLVAMILTPALCATMLKAGDADHGEKKGFFGWFNRIFD 519 Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588 +A R+ + + +L + + +G + V Sbjct: 520 RTANGYQSSVAGILKRSGRFVIVYLLLLPVIGWMFKSIPSSFLPNEDQGNFMVMVQLPPG 579 Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 L + ++ + + + E F V G + +K P Sbjct: 580 ASLERSQKVMDEVTHYFETEEKSTVESVFTVSGFSFVGQAQNAGMAFVGLKDWSERTAPG 639 Query: 649 STIQNTEIVGPKISRELIRKGIVGV 673 + + + ++ I V Sbjct: 640 TDVNSIIKRAMIHFKDNQDAMIFAV 664 Score = 75.5 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 83/252 (32%), Gaps = 9/252 (3%) Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 V N+ + + G ++G +F + + PG S + Sbjct: 788 VRNNKGEMVPFSAFSQSHWGFGSPRLARYNGNSSFEILGEAAPGYSTGEAMAAIEQIASK 847 Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702 + + + +++ + + + W + I + L Sbjct: 848 LPEGITVSWTGMSYQERLAGSQAPMLYALSMLVVFLCLA---ALYESWSVPIAVILVVPL 904 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + L G+E ++ +LT IG + + +++ + ++ L+ + + Sbjct: 905 GVLGALAATMFRGLENDVYFQVGLLTTIGLAAKNAILIVEFAKE---LHEKGMGLIEATV 961 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ L + TS+A + VLP+ + G + + + G++ A +IF Sbjct: 962 EACRMRLRPIIMTSLAFILGVLPLVMSSGAGANSRHAIGTSVMGGMISATVLAIFFVPLF 1021 Query: 820 LLFIYDWRAKNA 831 + I + Sbjct: 1022 FVLITKLFTRKK 1033 Score = 73.2 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 85/237 (35%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + + V + D + + + +++ + ++ ++++ Sbjct: 258 SQIRIKDVARVELGGESSDFITRFDGKPASGIGIKLATGANALDTQKAVDAKLEELSANF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + + I + + + + + + + +++ + L + + + Sbjct: 318 PQGLKMYKAMDTNPFVKLSIEEVVSTLFEAIVLVFLVMYLFLQNIRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A G N + ++ IG V+D +VV + + + +S + KS+ Sbjct: 378 GTFGVMAACGFTINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPVEATKKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V +M +PMA GS F++ + +V++ ++ + + Sbjct: 436 GQISGALVGVAMVLSAVFVPMAFMTGSTGAIYRQFSLTIVAAMVLSVLVAMILTPAL 492 >gi|229590184|ref|YP_002872303.1| putative efflux system transmembrane protein [Pseudomonas fluorescens SBW25] gi|229362050|emb|CAY48951.1| putative efflux system transmembrane protein [Pseudomonas fluorescens SBW25] Length = 1030 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 81/687 (11%), Positives = 177/687 (25%), Gaps = 47/687 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ I G L PQ + ++P+ P + + Sbjct: 8 RPIFAWVVALFILLAGALAI-----PQLPVAQYPNVAPPK-------------VEIYAVY 49 Query: 63 DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118 L + + L IT +F E V Sbjct: 50 PGASAQTLDESVVSLIEQELNGADHLLYFESQSSLGSATITATFQPGTNPEMAQVDVQNR 109 Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178 L+ V +L + L ++L + + S + R ++++ + Sbjct: 110 LKAVEPRLPQAVTQQGLQVEKVSAGFLLLVTLTSNDGKLDDVALSDYLARNVMNELKRLD 169 Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238 + + DP +L T A ++ N G +S Sbjct: 170 GVGKAQLYGA-ERAMRIWIDPQKLIGFNLTPADVNAAISAQNAQVSAGSIGDLPGTNSQE 228 Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298 V K ++S + + + Sbjct: 229 ITAAVLVKGQLS-------------TPAEFADIVLKANPDGSTVRIGDVARVEVGSQEYQ 275 Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358 L + T L + S Sbjct: 276 FSTRLNGKPSTAVSVQLSPGANALNTATRVRAKMDELSRFFPANVEYKIPYDTSPFVKVS 335 Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 + T LV V+F+ + ++ L+ + + ++ T A + LLG ++ + ++ Sbjct: 336 ITKVVYTLLEAMALVFAVMFLFLQNVRYTLIPTLVVPIALMGTFATMLLLGFSINVLTMF 395 Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477 G+VL IG+ VD I+V E + + S + + I + + + + Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMATEGLSPKDATKKAMGQITGAIVGITLVLVAVFLPM 455 Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527 F G + F+++M SIL S F A+++ A+ + + K Sbjct: 456 GFMAGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPIAKGEHHAKGGFFGGFN 515 Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587 L + G + I + L + + Sbjct: 516 KRFEQLTDRYEGWVAYALKRSGRYLLIYLMLLVGLGWMFSRLPSSFLPVEDQGYTITDIQ 575 Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 + ++ + + G + + + + S + K +E Sbjct: 576 LPPGASKNRTVQVAEQIEAHNAGEPGVGDTTMIMGFSFSGSGQNAALAFTTLKDWSERSS 635 Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674 + + EL ++ Sbjct: 636 DDSASSIADRANMAFSELKDAIAYAIL 662 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 85/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V Q S + + +++ + +++ Sbjct: 257 STVRIGDVARVEVGSQEYQFSTRLNGKPSTAVSVQLSPGANALNTATRVRAKMDELSRFF 316 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + + I K + ++ + + +++ + + L + + + Sbjct: 317 PANVEYKIPYDTSPFVKVSITKVVYTLLEAMALVFAVMFLFLQNVRYTLIPTLVVPIALM 376 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T L G N+ + ++ IG V+D +VV + + + T +S +D K++ Sbjct: 377 GTFATMLLLGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMATEGLSPKDATKKAM 434 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ LPM GSV F++ MA I+ +A ++ + + Sbjct: 435 GQITGAIVGITLVLVAVFLPMGFMAGSVGVIYQQFSLSMATSILFSAFLALTLTPALCAT 494 Query: 823 IYD 825 + Sbjct: 495 LLK 497 Score = 50.5 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 77/231 (33%), Gaps = 11/231 (4%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 A + V LS + ++ N A + +V + Sbjct: 788 NAGKMVPLSAFVEAKWTQGPTQLTRYNGYPAIAISGEAAPGHSTGEAMDEIQRLVSQLPA 847 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703 + T + + L+ + ++ +A + W + + L Sbjct: 848 GLGQEWTGLSLQERLSGAQAPLLLGLSLLIVFLCLA-----ALYESWSIPTSVLLVVPLG 902 Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763 + + +L G+ ++ ++T+IG S + +++ + + LY K Sbjct: 903 VLGAVVAVSLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKD---LYDQGEDLITATLK 959 Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASS 811 + L + TS+A + V+P+A+ G+ S + G++ A + Sbjct: 960 AARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLA 1010 >gi|33598341|ref|NP_885984.1| hypothetical protein BPP3832 [Bordetella parapertussis 12822] gi|33566899|emb|CAE39115.1| probable membrane protein [Bordetella parapertussis] Length = 1028 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 68/533 (12%), Positives = 158/533 (29%), Gaps = 39/533 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + +L +I IGL+ + + +P + Sbjct: 9 RRPVFASVLSLIIVLIGLIS-----YTRLSVREYPKIDEPIV---------SVDTTYKGA 54 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + + ++ + ++ + R ++ I + F+ SR + A +V + Sbjct: 55 SPEVIESQVTKPLEDQLAGIEGVDVMTSRSRSERSLINIKFSLSRDPDAAAAEVRDKVSR 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + + ++ I+ AI+ S I R ++ + Sbjct: 115 ARRFLPDEIDEPIIGKVEADSQPIIYIAVES--GSYSAIQTSDYINRYIKTRLSVLPGAA 172 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + L + D +L T + N R S + Sbjct: 173 EVRVFGERLPSMRIYVDRDKLAAYGLTVQDVEAALRSQNVEIPAGRIESRAREFSVVSST 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 ++ + D+ + + A Sbjct: 233 DLQTPAQFE--------------------DVVVANVKGYPVRLRDVAKVEIGAANDRVLS 272 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + ++ + + L + + S Sbjct: 273 RYNGRSAINIGLTRQSTANPLELSKAVRAEIVQLNQSLPAGMKLNIAYDSSVFIERSIDS 332 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++V+F + + ++ +I ++++ AL+ L G ++ ++ +V Sbjct: 333 VFKTIGEAIILVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMV 392 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481 L IGL VD I+V E I + + G + +T + L F Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGMPRKQAAFQGSREIGFAVVAMTLTLVTVYAPLAFAT 452 Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 G R FA+ + ++L+S F A+++ M ++R++ + N + + Sbjct: 453 GRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQHSHNRWYNLIEGW 505 Score = 83.2 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 76/216 (35%), Gaps = 7/216 (3%) Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 + + + ++ + ++ + +P N I + + I + Sbjct: 285 TRQSTANPLELSKAVRAEIVQLNQSLPAGMKLNIAYDSSVFIERSIDSVFKTIGEAIILV 344 Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739 ++ I+ + ++ I T+ + + LFG N + A++ IG V+D +V Sbjct: 345 VLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMVLAIGLVVDDAIV 404 Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---S 796 V + + + + + + E V ++ P+A G Sbjct: 405 VLENI---FRHIEEGMPRKQAAFQGSREIGFAVVAMTLTLVTVYAPLAFATGRTGRLFIE 461 Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 FA+ +A ++V+ ++ + + + + + R Sbjct: 462 FALALAGAVLVSGFVALTLTPMMCSVLLRHQHSHNR 497 Score = 48.5 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 G + ++ + IY+ + W + ++ L +T L L G ++ + Sbjct: 845 SGSIYLVFAMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQI 904 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784 ++TL+G +++ + +L + + + ++ L + T+ A + + Sbjct: 905 GLITLVGLITKHGILIVEFAN---QLRDQGKAMHEAVVEASVLRLRPILMTTGAMVLGTV 961 Query: 785 PMAVWGGS 792 P+A+ G+ Sbjct: 962 PLALAQGA 969 >gi|71153377|sp|Q93PU4|TTGH_PSEPU RecName: Full=Toluene efflux pump membrane transporter TtgH gi|14582625|gb|AAK69564.1|AF299253_4 inner membrane efflux pump component TtgH [Pseudomonas putida] Length = 1049 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 77/691 (11%), Positives = 175/691 (25%), Gaps = 51/691 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L + G L + + ++P+ + ++V Sbjct: 8 RPIFAWVLAIVAMLAGALSLA-----KMPISQYPNIAAPA-------------VSIQVSY 49 Query: 63 DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 +Q ++ S L + I ++F + +V Sbjct: 50 PGASAQTVQDTVVQVIEQQLSGLDGFRYMSAESASDGSMTIIVTFEQGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L + ++ L + ++ + I Q D I Sbjct: 110 KLQLATPRLPEEVQRQGLRVVKYQMNFFLVMSLVDRSGKLDNFDLGNLIASQLQDPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T ++ N G R Sbjct: 170 PGVGDFQLFGSP-YAMRIWLDPGKLNSYQLTPTDVASAIREQNVQVSSGQLGGLPTRSGV 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V K ++ + + + Sbjct: 229 QLNATVLGKTRMT-------------TPSQFDEILVKVNPDGSQVRVKDVGRAELGADSF 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T++ L +A I Sbjct: 276 AISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYLPDGVEVIYPYDTTPVVEA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ALL G + + ++ Sbjct: 336 SIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLLATFALLPYFGLNINVLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + + + V Sbjct: 396 YAMVLAIGLLVDDAIVVVENVERLMHDEGLSPLEATRKSMDQISGALVGIGMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG + FAIT+ + + +S+ A+ A+ + I R Sbjct: 456 MAFFGGSAGIIYQQFAITIVVCMGLSILVALVFTPALCVTILKAPEGNSHHERKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + + ++ + +G + + V Sbjct: 516 NRIFDRGTRRFERGVGAMLKGRGRYLLAFLLITGGTGYLFTQIPKAFLPNEDQGLMMIEV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L+ ++ + + E V G VL K Sbjct: 576 RTPANASAERTEGVLQEVRDYLANDEGALVEHFMTVNGFNFAGRGQNSGLVLITFKDWKE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 + + + ++ ++ + Sbjct: 636 RHGAGQDVFSIAQRANQHFAKIKDASVMAFV 666 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 88/243 (36%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V IS Q D L G+ + ++ + ++ + Sbjct: 258 SQVRVKDVGRAELGADSFAISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYL 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705 P + I + + + + + + +++ + L + + + Sbjct: 318 PDGVEVIYPYDTTPVVEASIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T FG+ N+ + A++ IG V+D +VV + + ++ +S + KS+ Sbjct: 378 ATFALLPYFGLNINVLTMYAMVLAIGLLVDDAIVVVENV--ERLMHDEGLSPLEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 ++ G V M +PMA +GGS + FAI + + ++ ++ + + Sbjct: 436 DQISGALVGIGMVLSAVFVPMAFFGGSAGIIYQQFAITIVVCMGLSILVALVFTPALCVT 495 Query: 823 IYD 825 I Sbjct: 496 ILK 498 Score = 61.2 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 79/259 (30%), Gaps = 10/259 (3%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + V S + + N L Sbjct: 778 RISPEDFDKWYVRNSLGQMVPFSAFATGEWVNGSPRLERYGGISSLNILGEPAPGYSTGD 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 + + E++++ I T + E + L+ + I +L + Sbjct: 838 SMIAIAEIMQQLPAGIGLSYTGLSYEEIHAGDQAPLLYA-----LTVLIVVLCLAALYES 892 Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 W + I + L I + + ++ ++T +G S + +++ + ++ + Sbjct: 893 WSVPVSVIMVVPLGILGAVLATLWRDLTADVYFQVGLMTTVGLSAKNAILIVEFAKELYE 952 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806 ++ L + TS+A VLPMA+ G S A + G++ Sbjct: 953 KE--GYPIVKAAIEAAKLRLRPILMTSLAFTFGVLPMAIASGAGAGSQHSIATGVVGGMI 1010 Query: 807 VAASSSIFIAAPILLFIYD 825 A ++F + + Sbjct: 1011 TATVLAVFFVPLFYVVVVK 1029 >gi|37523557|ref|NP_926934.1| RND multidrug efflux transporter [Gloeobacter violaceus PCC 7421] gi|35214561|dbj|BAC91929.1| RND multidrug efflux transporter [Gloeobacter violaceus PCC 7421] Length = 1050 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 72/543 (13%), Positives = 150/543 (27%), Gaps = 32/543 (5%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R + + +I GL+ P + ++P P Sbjct: 8 RRPIFAGVCAVIILLAGLVSI-----PSLPIAQYPEISPPQVT---------VTATYVGA 53 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120 + V + + + ++ + + I ++F R K+ A V + Sbjct: 54 SAEVVEETVTTLLERQINGVEGMRYITSNSSDQGVSTIVVTFELERDKDIAAVDVQNRIS 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 V +L ++ + + + ++ ++ S +D + Sbjct: 114 TVLPQLPSLVQQTGVQISKQSGAPLLGIGLYSEKGQYTNDLLSNYADLYLVDALKRVPGV 173 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + DP+RL T + N G L S Q Sbjct: 174 GNVQIFGERRYSMRLWLDPNRLAARSLTAQDVVNAVNEQNVQVGAGSIGQPPLDKSQTFQ 233 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + + Sbjct: 234 IGLRVLGRL-------------KEPGEFADLVIRTNADGSLTRLKDVGRAELGAENYNSF 280 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + A L P V S + Sbjct: 281 LRFRGQDGVGLGIYPIPGSNALDIGKAVKARMAELEKSFPPGVQYRVAFDTTDFIEESAA 340 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T I LV++V+F+ + K L+ +I ++++ T + L ++ ++ G+ Sbjct: 341 EVIETLIIAILLVVLVMFIFLQDWKSTLIPAITIPVSLVGTFIFVKLFDFSINSLTLFGL 400 Query: 421 VLGIGLAVDSNILVNERI--REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478 L GL VD I+V E I + + C+ D + I + + + V F Sbjct: 401 TLATGLVVDDAIVVIENIARTSKEQCKDPKECASDAMREVTAAVIAIALVLMAVFVPVAF 460 Query: 479 FFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536 F G + FA+T+ SI+IS F A+++ A+ + + +S Sbjct: 461 FPGTTGQLYKQFALTIVFSIVISTFNALTLTPALAALLSTGQVGESRFFLFRWFNSGFEA 520 Query: 537 CIA 539 Sbjct: 521 FKN 523 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 82/235 (34%), Gaps = 6/235 (2%) Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652 V + + + + L +++ + ++ ++ + P Sbjct: 266 DVGRAELGAENYNSFLRFRGQDGVGLGIYPIPGSNALDIGKAVKARMAELEKSFPPGVQY 325 Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711 E + I +II+ + +++ ++I W L T+ + + T F Sbjct: 326 RVAFDTTDFIEESAAEVIETLIIAILLVVLVMFIFLQDWKSTLIPAITIPVSLVGTFIFV 385 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 LF N + + G V+D +VV + + ++ ++ E Sbjct: 386 KLFDFSINSLTLFGLTLATGLVVDDAIVVIENI--ARTSKEQCKDPKECASDAMREVTAA 443 Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 + ++ +P+A + G+ FA+ + F IV++ +++ + + + Sbjct: 444 VIAIALVLMAVFVPVAFFPGTTGQLYKQFALTIVFSIVISTFNALTLTPALAALL 498 Score = 63.6 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 39/381 (10%), Positives = 107/381 (28%), Gaps = 9/381 (2%) Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514 G A F++ ++ F F I + + + + Sbjct: 653 GIKEALVIPFNAPTIQGLSAFGGFAFELQDRGNNGIEALSATAQELIAKGNATPGLQGLF 712 Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574 + + + R + + + S + ++ + Sbjct: 713 TTFNPNSPQIVIEVDRNKAKSLNVPLSEIFNTLQTYLGSRYVNDFNLFGRTYRVYVQADE 772 Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634 + A S ++ L + L R G++ Sbjct: 773 KFRANPRDIRALYVRSTSGRMVSMGELVSTEPVTAPSIVTHYNLFRNVEITGNAAPGFSS 832 Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWY 691 + + E + G+ I + + +Y+ + Sbjct: 833 GQAIAAMEKLAAETLPASMGFEWSGISLEEKVSGGLAPFIFALGILFVYLVLAAQYESLV 892 Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751 + + L + L + GI ++ ++ LIG + + +++ + + Sbjct: 893 EPFIILLAVPLAVLGALLALSFRGIANDVYCQIGLVMLIGLASKNSILIVEFAN---QAR 949 Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808 +S D ++ E L + TS A + + P+ + G + S + G++++ Sbjct: 950 ERGMSIVDAALEASRERLRPILMTSFAFILGIWPLVIASGAGAASRQSLGTAVFGGMIIS 1009 Query: 809 ASSSIFIAAPILLFIYDWRAK 829 S+F+ + + + R + Sbjct: 1010 TFLSLFVVPILYIVLVSIRER 1030 >gi|329938961|ref|ZP_08288335.1| preprotein translocase subunit SecF [Streptomyces griseoaurantiacus M045] gi|329301846|gb|EGG45739.1| preprotein translocase subunit SecF [Streptomyces griseoaurantiacus M045] Length = 385 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 14/303 (4%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L + F+ R G+SIL +I +I L GLN GIDF+GG V + Sbjct: 10 RLHRGEVGYDFVGHRKIWYGVSILITITAIVGLAVRGLNMGIDFQGGAVFTTP-KTSVSV 68 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 S + E + Q +R+Q D+ + + K + + Sbjct: 69 SQAETYAEEAAGHEAVVQKLGTGG---LRIQVAGLDTSKSDEIKAALAKDMK---IDTEN 122 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 N ++VGP ++ K G+ I + ++IY+ I F+W A+ A+ LI DIT T G + Sbjct: 123 INADLVGPSWGEQIANKAWEGLAIFMVLVVIYLAIAFEWRMAVAALVALIHDITITTGIY 182 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769 AL G E V +LT++GYS+ D VVV+D +++ K T ++ ++ ++SIN TL Sbjct: 183 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDLTKQTRWTYSEVANRSINGTL 242 Query: 770 GRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 RS+ T++ A + V + GG + ++ + G+ A SSIFIA P++ + Sbjct: 243 VRSINTTVVALLPVAGLLFIGGGFLGAGTLNDISLSLFVGLAAGAYSSIFIATPLVADLK 302 Query: 825 DWR 827 + Sbjct: 303 ERE 305 >gi|238919140|ref|YP_002932654.1| acriflavine resistance protein B [Edwardsiella ictaluri 93-146] gi|238868708|gb|ACR68419.1| acriflavine resistance protein B [Edwardsiella ictaluri 93-146] Length = 919 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 73/689 (10%), Positives = 178/689 (25%), Gaps = 51/689 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ GLL Q ++++P+ P + + Sbjct: 29 RPIFAWVIAIFFSLAGLLAI-----HQLPIEQYPNLAPPT-------------VRISASY 70 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 L+ + + S ITL+F +V Sbjct: 71 PGASAQTLENTVTQIIEQNMTGLDGLIYTSSQSSSSGSASITLTFQSGTDPNEAMQQVQN 130 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L KL + ++ + + + S++ + + + I Sbjct: 131 QLSAATRKLPQEVQQQGIRVSKSGDSSLMTIAFVSTDDSMDRQDIADYVASNLQGPISRI 190 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L Q TT + N+ G Sbjct: 191 DGVGSIDAFGSQ-YAMRIWLDPNKLNQFRLTTQDVISAIKSQNSQIAVGQIGATLAVPGQ 249 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + ++ + NI Sbjct: 250 ALNATLMAQSQL-------------QTPKQFREITLRVNSDGSLVTLGDVANIELGAEKY 296 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + + + + T A L Sbjct: 297 DYLSRVNGKPASGMSIKLASGANELATDARVKAKLAQLEPYFPHGLKVEYAYETTPFVQA 356 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 + T LV + +++ + + L+ ++ + + T A+L +G ++ ++ Sbjct: 357 AIQDAVKTLFQAIALVFLAMYLFLQSLRATLIPTIAVPVVQLGTFAVLFAMGYSINTLTM 416 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL V+ I+V E + + + S + + + + V Sbjct: 417 FAMVLAIGLLVNDAIVVVENVERLMSEEGLSPREATRKSMDQIQGALVGIALVLSAVFVP 476 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRF 531 + FGG R F+IT+ ++ +S+ A+ + A+ ++R + F Sbjct: 477 MALFGGTTGVTYRQFSITIVFAMPLSVLVALILTPALCATLLRPVSKTQLHAKKGFFGWF 536 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK--------GGIQLGV 583 + A+++ V S + + +L G Y G + Sbjct: 537 NRTFERSALRYENGVARVVRNSGRSMLLYLLILGGLGTLYLHLPTSFLPQEDRGVFMTQI 596 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 ++ ++ + + + + F + G+ R+ K Sbjct: 597 QLPVGATQQETLKVVDKVENYLLVGEGKNVQSVFSIVGAGPGGNGQNVVRMFVRFKPWEQ 656 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672 + + + + Sbjct: 657 RTGDADSAGAIIERTSRAFANIREARVFA 685 Score = 79.3 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 6/241 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + + D + + + + +A ++ ++ P Sbjct: 281 VTLGDVANIELGAEKYDYLSRVNGKPASGMSIKLASGANELATDARVKAKLAQLEPYFPH 340 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707 + I+ + + + + + +++ L + + T Sbjct: 341 GLKVEYAYETTPFVQAAIQDAVKTLFQAIALVFLAMYLFLQSLRATLIPTIAVPVVQLGT 400 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + A++ IG VND +VV + + + +S R+ KS+++ Sbjct: 401 FAVLFAMGYSINTLTMFAMVLAIGLLVNDAIVVVENV--ERLMSEEGLSPREATRKSMDQ 458 Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 G V ++ +PMA++G G F+I + F + ++ ++ + + + Sbjct: 459 IQGALVGIALVLSAVFVPMALFGGTTGVTYRQFSITIVFAMPLSVLVALILTPALCATLL 518 Query: 825 D 825 Sbjct: 519 R 519 >gi|17544729|ref|NP_518131.1| acriflavin resistance transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427018|emb|CAD13538.1| putative acriflavin resistance transmembrane protein [Ralstonia solanacearum GMI1000] Length = 1049 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 68/664 (10%), Positives = 177/664 (26%), Gaps = 49/664 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L I G + Q + ++P+ P +++ Sbjct: 8 RPVFAWVLALFIIVAGAISI-----TQLPIAQYPTIAPP-------------SIIITATY 49 Query: 63 DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN--KITLSFADSRFKENIADKVT 116 L + + + IT++F V Sbjct: 50 PGASAKTLDDAVTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 L+ V ++L + + + ++ + + I R ++++ Sbjct: 110 NRLKRVEARLPSSVTQQGVQVDKTRSNFLLFATLISKDGKMDPVALGDYISRNVLNEVKR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 Q + + DP++L T + N G Sbjct: 170 VPGVGQAVLFGT-ERAMRIWIDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSD 228 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 + V + G T + + + + + Sbjct: 229 QP----IAATVVVEGQ---------MTTTEQFGNIVLVSKPDGSQVRIKDVARLELGGQT 275 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + I+ + T + L + Sbjct: 276 YATSARINGQPISAIGVQLSPTGNALGTAKAVKAKLDELSKYFPAGVEYKIPYDTSKFVQ 335 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV +V+ + + ++ L+ + ++++ A ++ LG ++ + + Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLVFLQNIRYTLIPSIVVPISLLGAFATMNALGFSINVLT 395 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 + G+VL IG+ VD I+V E + + + + I + + + Sbjct: 396 MFGLVLAIGILVDDAIVVVENVERIMSQEGLPPREATRKAMGQITGAIIGITLVLMAVFI 455 Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDI 525 + FF G R F+++M SI S A+++ A+ + ++K Sbjct: 456 PMAFFSGSVGAIYRQFSLSMVASIFFSALMALTLTPALCSTLLKPIEKGSHHEKKGFFGW 515 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 ++ + + I ++ + + L + Sbjct: 516 FNRMFTSTTDRYQSLVERVLKKTFRYMVIYGALIAAVVFLFMRLPSSFLPNEDQGYIITN 575 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 + + LE ++ + +Q+ +N + + + ++ K + Sbjct: 576 IQLPPAASANRTLEVIKHVENYYQHEKAVENIVAVQGFSFSGNGPNAALVFTTLKDWSSR 635 Query: 646 VPLS 649 Sbjct: 636 GADQ 639 Score = 78.2 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 89/260 (34%), Gaps = 6/260 (2%) Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633 F + + V + V Q S + + + G+++ + Sbjct: 246 QFGNIVLVSKPDGSQVRIKDVARLELGGQTYATSARINGQPISAIGVQLSPTGNALGTAK 305 Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692 ++ ++++ P K + I + + + + + + + + + + Sbjct: 306 AVKAKLDELSKYFPAGVEYKIPYDTSKFVQISIEEVVKTLFEAMALVFLVMLVFLQNIRY 365 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 L + + + G N+ + ++ IG V+D +VV + + + Sbjct: 366 TLIPSIVVPISLLGAFATMNALGFSINVLTMFGLVLAIGILVDDAIVVVENV--ERIMSQ 423 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809 + R+ K++ + G + ++ +PMA + GSV F++ M I +A Sbjct: 424 EGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVASIFFSA 483 Query: 810 SSSIFIAAPILLFIYDWRAK 829 ++ + + + K Sbjct: 484 LMALTLTPALCSTLLKPIEK 503 Score = 55.9 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 28/258 (10%), Positives = 79/258 (30%), Gaps = 9/258 (3%) Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615 F + + + + V S Q Sbjct: 759 FPNYGRQQRVIVQADRINRMQPEDIMNLYVRNTQGSMVPMSAFAKGHWVVGPVQLVRYNG 818 Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675 VR+ + ++ ++ + + + T + S + + Sbjct: 819 YPSVRISGDAATGASTGDAMDEMEHLASRLPAGIGFEWTGQSLQEKSSGSQAPALYAL-- 876 Query: 676 SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 S +A+ + + ++ W I + L + L L + ++ ++ ++G S Sbjct: 877 SLLAVFLVLAALYESWSIPAAVILVVPLGVLGALLGVTLRFMPDDVYFKVGLIAVVGLSA 936 Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794 + +++ + + L + ++++ + TS A + VLP+A+ G+ Sbjct: 937 KNAILIIEFAKD---LQAQGKGLIEATLEAVHLRFRPIIMTSFAFILGVLPLAIATGASS 993 Query: 795 ---GSFAIPMAFGIVVAA 809 + + G++ A Sbjct: 994 ASQRAIGTGVMGGMITAT 1011 >gi|91223972|ref|ZP_01259235.1| putative acriflavin resistence protein [Vibrio alginolyticus 12G01] gi|91190883|gb|EAS77149.1| putative acriflavin resistence protein [Vibrio alginolyticus 12G01] Length = 1050 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 78/692 (11%), Positives = 182/692 (26%), Gaps = 48/692 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + + +P P + + Sbjct: 8 QRPKFALVISIILTLAGAISLA-----ILPVAEYPQISPP-------------SVSVSAY 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 ++ D + + + E + S + + + ++F + V Sbjct: 50 YTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + SKL + + + +++ I DQ+ Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 ++ + + DP ++ L TT+ + N G + Sbjct: 170 AKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYAALAEQNVQVAAGRVGAAPYNNP 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ + K + + + + + Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANPNGSTVYLKDVARVELGKKF 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + S ++ + + + L L Sbjct: 277 YDGNGKFRGQDASIVALSLQSDANALESGQAVMELLEGLSKNFPEGMEYETSYDTTVFVS 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV+ V ++ + + L+ +I +++I T A++ G T+ + Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQATGFTINTVT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471 + G++L IG+ VD ILV E + K+ S + + I S + Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSISPRKATLLAMKEVTGPIITSTLVLLAVF 456 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525 I +L G R FA+T+ +S++IS A+++ A+ + ++ + Sbjct: 457 IPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTANWFQAFNR 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 ++ + + + T + KG + + V Sbjct: 517 GLERITTRYGQIAGFLVKKSLLLVTFFIVAIAAVTFFAKTTSTAFVPQEDKGILLVNVQL 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 LS L DG + V + T Sbjct: 577 PDSASLSRTEEVTNDLMKMIGEEPGVDGVTVANGYSFMTGAAASNGASVFIKLHDWDTRN 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 I R V+ + Sbjct: 637 SLQGEHSANAIAARINGRAATE-LPQAVVFAM 667 Score = 75.5 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 86/235 (36%), Gaps = 5/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + +++ + + + + +++ P Sbjct: 262 VYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESGQAVMELLEGLSKNFPE 321 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707 T E I+ + +I + + ++ L + + + + T Sbjct: 322 GMEYETSYDTTVFVSESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + ++ IG V+D ++V + + SIS R ++ E Sbjct: 382 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPSISPRKATLLAMKE 440 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G + +++ +P+A+ G FA+ + +V+++ +++ ++ + Sbjct: 441 VTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495 Score = 55.1 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 52/447 (11%), Positives = 116/447 (25%), Gaps = 26/447 (5%) Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 L+ P + G+ + G + + + + + + G A + Sbjct: 592 LMKMIGEEPGVDGVTVANGYSFMTGAAASNGASVFIKLHDWDTRNSLQGEHSANAIAARI 651 Query: 467 NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521 N + V+F G AV G G ++ S + M I + Sbjct: 652 NGRAATELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLSMVMGEMIQAANQAP 711 Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 I + +P L + +N F ++ Sbjct: 712 EIAYTFSTFRANVPHYYVDIDREKAQQLGISLSSIFQTLQGNLGSLYVNDFTMFGKNFRV 771 Query: 582 GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + A+ V S S + D + + Sbjct: 772 TMQADSQHRSSMEDLERFHVRSSNGDMVPLSTLVSYEQVFEPDVAWRYNMYRSAIIQGQP 831 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685 A + + Q ++ + + G + + + IY + Sbjct: 832 APGYSSGDAIAAMERVAAEVLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L I + + + L G NL A ++ LI + + +++ + + Sbjct: 892 QYESWSIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802 + + K TS + + + P+ G+ S + + Sbjct: 952 QEREE--KDADIDSAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGVSLI 1009 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829 G++ + F+ + R K Sbjct: 1010 GGLLCVLLAGTFLIPGFYALVQRQREK 1036 >gi|325123248|gb|ADY82771.1| acridine efflux pump (RND family) [Acinetobacter calcoaceticus PHEA-2] Length = 687 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 66/554 (11%), Positives = 153/554 (27%), Gaps = 41/554 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G+L L + + ++P+ P + + Sbjct: 8 RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S Q I L+F + +V Sbjct: 50 PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGIDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ + L D ++ + T + + + + + + Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNSLSDSDIKDYVNSSIKEPLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP++L T + ++ N+ G Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + + + Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T E + LR + + Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPTGLADKLAYDTTPFIRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV IV+F+ + + ++ ++ + V+ T A++++ G ++ ++ Sbjct: 336 SIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + + + + V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATSRSMQQISGALIGITSVLTAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + FFGG R F+IT+ ++++S+ A++ A+ I++ N + F Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKAPSNNIFARFF 515 Query: 534 IPDCIAIQFMRARF 547 M + Sbjct: 516 RGFNNGFDRMSHSY 529 Score = 78.6 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 8/236 (3%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + L +++ +E ++ + P Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPT 319 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707 R I + +I + + + I +++ + W + + + + T Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 +FG N + A++ IG V+D +VV + + + +S+ + Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATSRSMQQ 437 Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819 G + TS+ +PMA +GG VI F+I + +V++ ++ + Sbjct: 438 ISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPAL 492 >gi|78222030|ref|YP_383777.1| hydrophobe/amphiphile efflux-1 HAE1 [Geobacter metallireducens GS-15] gi|78193285|gb|ABB31052.1| Hydrophobe/amphiphile efflux-1 HAE1 [Geobacter metallireducens GS-15] Length = 1053 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 80/693 (11%), Positives = 175/693 (25%), Gaps = 55/693 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ M+ GLL + ++P P + + Sbjct: 8 RPIFAWVIAIMVMLAGLLAI-----KTLPVSQYPPIAPP-------------QITINAMY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117 +Q + L + S I L+F +V Sbjct: 50 PGASAQTVQDTVTQVIEQKLNGIDNLIYMSSTSDSAGAVAINLTFKAGTDPNIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L +K + + +++ + + ++ D I + Sbjct: 110 KLQLATPLLPQIVQKQGIQVVKSTKNFLLIVGVVSEDGSMDRPALTDYLVANVQDVISRT 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + + +P++L TT + N FG Sbjct: 170 EGVGEVTVFGSQ-NAMRIWLNPAKLNNYHLTTNDVIAAVQAQNAQVSAGQFGGNPAPPGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 + + + + I Sbjct: 229 QLNATITARTLL-------------QTPEQFNAIILRTNPDGSTVRLKDVAECKIGTENY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + A + T + A L + Sbjct: 276 DIEARYKGKPMGGMALRLAAGANALDTADRVKAKMAELSKYFPAGMEVVYPYDTTPFVKV 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV I++F+ + + L+ ++ + ++ T+ LS G ++ ++ Sbjct: 336 SIEEVVQTLIEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGTMGALSAAGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +V+ IGL VD I+V E + + S + + S ++ + Sbjct: 396 FALVIVIGLLVDDAIVVVENVERIMSEEGLSPHDATVKSMGQITSALWGIATVLSAVFLP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519 + FFGG R F+IT+ ++++S+ TA + A+ + Sbjct: 456 MAFFGGSTGVIYRQFSITIISAMILSVMTAQILTPALCSTLLKPVEKGHEACETGWFCGF 515 Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579 + + + F + + V ++ + + L + +G I Sbjct: 516 FRWFNKCFNWCRGRYEGIVGRSFGKPVRYLVIYGVIVAAMAFFFLRLPTAFLPDEDQGFI 575 Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639 V + LE L+ + + E + G +K Sbjct: 576 VCQVQLPAGAAQERTITVLEQLEHHFLEKEKKSVETIITIAGFSFAGRGQNMGLAFVRLK 635 Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672 P K ++ Sbjct: 636 DWKLRPTPDMKAPAVAGRAMKAFSQIRDGLAFA 668 Score = 70.9 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 75/198 (37%), Gaps = 10/198 (5%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 + + + K + + +T E+++ I V + I M +++ Sbjct: 301 DTADRVKAKMAELSKYFPAGMEVVYPYDTTPFVKVSIEEVVQTLIEAVFLVFIIMFLFLQ 360 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 L + + + T+G + G N + A++ +IG V+D +VV + + Sbjct: 361 ---NIRATLIPTIAVPVVLLGTMGALSAAGFSINTLTMFALVIVIGLLVDDAIVVVENV- 416 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF-ISVLPMAVWGGSV---IGSFAIPM 801 + +S D KS+ + ++ LPMA +GGS F+I + Sbjct: 417 -ERIMSEEGLSPHDATVKSMGQITSA-LWGIATVLSAVFLPMAFFGGSTGVIYRQFSITI 474 Query: 802 AFGIVVAASSSIFIAAPI 819 ++++ ++ + + Sbjct: 475 ISAMILSVMTAQILTPAL 492 Score = 58.9 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 9/218 (4%) Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676 + Q PG S + V + ++ + +++ Sbjct: 827 VEIMGQAAPGVSTGEAMVEMEKMAAQLPPGIGYEWTGLSYEEKQAGKQAPALYAISLLVV 886 Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 +++ + W + L L + + L + ++ +LT +G S + Sbjct: 887 FLSVA---ALYESWTIPFVNLLMLPLGLVGAVTAVKLRMLPNDVYLQIGLLTTVGLSTKN 943 Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793 +++ ++ M + ++ L + TS+A F LP+A+ G + Sbjct: 944 AILIIQFIKDQMHQ---GHELVEATLTAVKIRLRPVIMTSLAFFFGTLPLALTKGAGAAA 1000 Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + + G++ A + + + AK Sbjct: 1001 QNAIGTAVTGGLLSATFIDLIFIPFFFVMVSKVFAKKK 1038 >gi|153004191|ref|YP_001378516.1| protein-export membrane protein SecF [Anaeromyxobacter sp. Fw109-5] gi|152027764|gb|ABS25532.1| protein-export membrane protein SecF [Anaeromyxobacter sp. Fw109-5] Length = 400 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 76/265 (28%), Positives = 129/265 (48%), Gaps = 5/265 (1%) Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621 + + + G ++ +P +++ +E +G + G Sbjct: 118 VQAKFPVERWSFNPEIGDKIDFEFKQPPSPQALQAAVEGAGVGVREVRAEQGLAAGTRSF 177 Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681 + + + E VGP + REL +G V+ + ++ Sbjct: 178 AVITQGIREKIERDLSTHFAQAQPEV----RRVEYVGPAVGRELRNQGFKAVLYAMALIV 233 Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 +Y+ +RF + F+ G I ++ D TLG+FA G EFNLT++A +LT++GYSVND VVVY Sbjct: 234 VYVGLRFDFRFSPGVIIAILHDAIVTLGYFAFTGREFNLTSIAVLLTVVGYSVNDTVVVY 293 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801 DR+R+N Y S ++++ SINETLGR+ TS A +S++ + V+G + F+ M Sbjct: 294 DRIRENQAKY-KGKSLAEIVNLSINETLGRTFLTSFATALSLVGLLVYGVGTLFDFSAAM 352 Query: 802 AFGIVVAASSSIFIAAPILLFIYDW 826 GIV S+ FIAAP+ ++ + Sbjct: 353 LVGIVSGTYSTWFIAAPMTIWFEER 377 >gi|170720211|ref|YP_001747899.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas putida W619] gi|169758214|gb|ACA71530.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pseudomonas putida W619] Length = 1050 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 74/687 (10%), Positives = 192/687 (27%), Gaps = 39/687 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G L L + ++++PS P + Sbjct: 8 RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AISVTYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 V + ++ + + + IT +F + +V L Sbjct: 54 AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNL 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ + T + +++ + + + I+ D I + Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMTKDDLANYIVSNMQDSISRTAGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L + T + N G Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNKFQLTPVDVRTAVAAQNVQVSSGQLGGLPAMPGTQLNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + K + + + + +G Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNSDGSQVRLRDVAQVGLGGENYAISA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L P + S S Sbjct: 280 QFNGKPASGLAVKLATGANALDTATALRKTISDLEPFFPPGVKAVFPYDTTPVVTESISG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV +V+++ + + ++ ++ + ++ T +L+ G ++ ++ +V Sbjct: 340 VIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + + + + + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINPLSRF 531 GG R F+IT+ ++ +S+ A+ A+ +++ K KS +R Sbjct: 460 GGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPLKKGEHHVAKSGFFGWFNRN 519 Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 F + + +L + + F GVL + Sbjct: 520 FDRSVNGYERSVGTILRNKVPFLLGYALIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTP 579 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 + + + I + + E + + + G + A + + + + Sbjct: 580 AGSSAERTQVVIDQMREYLLEDEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERSK 639 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI 678 +N+ + +++ ++ + Sbjct: 640 ENSVFGLAERAQQHFFSFRDAMVFAFA 666 Score = 72.0 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 87/247 (35%), Gaps = 6/247 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + IS Q + L +++ L + Sbjct: 258 SQVRLRDVAQVGLGGENYAISAQFNGKPASGLAVKLATGANALDTATALRKTISDLEPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + E I I +I + + + + +++ + + + T+ + + Sbjct: 318 PPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G A G N + A++ IG V+D +VV + + + + ++ +S+ Sbjct: 378 GTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKRSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V ++ +LPMA +GGS F+I + + ++ ++ + Sbjct: 436 EQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCAT 495 Query: 823 IYDWRAK 829 + K Sbjct: 496 MLKPLKK 502 Score = 71.6 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 70/185 (37%), Gaps = 10/185 (5%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692 E + + L G +L + + + + +++ + W Sbjct: 837 EAMAEVERIAGELPDGIGYSWTGMSYEEKLSGSQMPAL-FALSVLFVFLCLAALYESWSI 895 Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752 + + + L I L +L G+ ++ + +LT IG + + +++ + ++ L+ Sbjct: 896 PIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKE---LHE 952 Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809 S D ++ L + TS+A + V+P+ + G + + G++ A Sbjct: 953 QGKSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTISSGAGAGSQHAIGTGVIGGMISAT 1012 Query: 810 SSSIF 814 +IF Sbjct: 1013 VLAIF 1017 >gi|317484714|ref|ZP_07943615.1| protein-export membrane protein SecF [Bilophila wadsworthia 3_1_6] gi|316924070|gb|EFV45255.1| protein-export membrane protein SecF [Bilophila wadsworthia 3_1_6] Length = 368 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 161/346 (46%), Gaps = 49/346 (14%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPVD 590 + I F+ R + G+S L + + +F +G YG+DF GG + + +PV Sbjct: 4 HIFSKQTKIDFVGMRHYAYGLSALLILVGLITIFMNGGLRYGVDFAGGAAVQLQFEKPVA 63 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 ++ +L +++ ++ Q + + + P + R + + + ++ Sbjct: 64 DEDIKKSLAEMELPGLAIQQYGEDGRDYLVRFSTPNLTSEGIRSNILSSLEKSFAGNPAS 123 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--------------------- 689 IQ E+VGPK+ +L + + + + + +YI RF+ Sbjct: 124 IQRLEMVGPKVGADLRNAALEAMYFAILLITVYISGRFEQRWMIAALMAAVLGSAMYVMG 183 Query: 690 -------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724 +ALGAI L+ D+ TLG A+ G E +L +A Sbjct: 184 FLGMDMVYRVIGALALTLLISWKLKLNYALGAIVGLLHDVLITLGLLAMMGKEIDLNIIA 243 Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSMAAFIS 782 A++TL+GYS+ND ++VYDR+R+N++ D+I+ S+N+TLGR++ TS I+ Sbjct: 244 ALMTLVGYSLNDTIIVYDRIRENLQNQPEDNPAPLADIINLSVNQTLGRTIMTSATTLIA 303 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 L + + GG I FA+ M+ G+ + SS+F++ PILL + D R Sbjct: 304 ALSLTILGGGAIHDFALTMSLGVFIGTFSSVFVSNPILLLLGDTRQ 349 >gi|146340963|ref|YP_001206011.1| preprotein translocase subunit SecF [Bradyrhizobium sp. ORS278] gi|146193769|emb|CAL77786.1| Protein-export membrane protein secF [Bradyrhizobium sp. ORS278] Length = 341 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 102/294 (34%), Positives = 161/294 (54%), Gaps = 2/294 (0%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 ++PD F + R IS SI +I L FTHGLN GIDF+GG L V A Sbjct: 29 RIVPDDTHFDFTQFRRISFPISAALSILAIVLFFTHGLNLGIDFRGGSLLEVRAKSGTAD 88 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 S G L E K I Sbjct: 89 IAGMRATLSTLGLGEVQLQQFGADTDASVLIRIAEQPGGDAAQQEAANKVKAAIGDSVEY 148 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 + E+VGP++S E + G++G++++ +++LIY+W RF+W FALGA+ + DI T+GF Sbjct: 149 RRIEVVGPRVSGEFLAVGLLGLMLAIVSILIYLWFRFEWQFALGAMIANVHDIVLTIGFM 208 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 ++ ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y + L+++SIN TL R Sbjct: 209 SISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLSR 267 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824 S+ T + +++L + ++GG I SF M FG ++V +SIFIA+PIL+++ Sbjct: 268 SIITHVTVTLALLALLLFGGPAIHSFTAVMMFGVVLVGTYTSIFIASPILIYLG 321 >gi|327485704|gb|AEA80110.1| Protein-export membrane protein SecD [Vibrio cholerae LMA3894-4] Length = 612 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 151/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%) Query: 27 LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83 + S + P + + I LGLDLRGG +L VD D D ++ L+ Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRA 171 Query: 84 EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143 E + S++ + N +F + V +LQ + + + ++ Sbjct: 172 ERLRGVSVQAMGND---AFEVKTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220 Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203 + SQ N + + I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280 Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263 ++G TA ++F++ + L D +G ++ + +SG H+ A A D Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338 Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312 V G + V R+ + + + Q+ Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398 Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372 + +I+G ++E A LA +LRAGSL + IVEER +GA LG ++I G A+ G+ Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458 Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431 + + FM + Y + G VA+ ++ +N+ L L++LL A LTLP IAG+VL +G+AVD+N Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 +L+ ERIR++ + ++ ++D GF A+STI D+NIT +I V+L+ G G ++GFA+T Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578 Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524 +GL +L SMF+ + RA++ + + + Sbjct: 579 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%) Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688 + + + + TI +G + E I G + + L ++ + + Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469 Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 + A L++++ LG AL G L +A ++ +G +V+ V++++R+R Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 + +F ID + + ++ I+ + + G I FA+ + G++ Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585 Query: 808 AASSSIFIAAPILLFIYDWRAKN 830 + S +F + ++ ++ + Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608 >gi|71153533|sp|O31100|SRPB_PSEPU RecName: Full=Solvent-resistant pump membrane transporter SrpB gi|2605914|gb|AAD12176.1| inner membrane transporter protein [Pseudomonas putida] Length = 1049 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 77/691 (11%), Positives = 175/691 (25%), Gaps = 51/691 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L + G L + + ++P+ + ++V Sbjct: 8 RPIFAWVLAIVAMLAGALSLA-----KMPISQYPNIAAPA-------------VSIQVSY 49 Query: 63 DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117 +Q ++ S L + I ++F + +V Sbjct: 50 PGASAQTVQDTVVQVIEQQLSGLDGFRYMSAESASDGSMTIIVTFEQGTDPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ +L + ++ L + ++ + I Q D I Sbjct: 110 KLQLATPRLPEEVQRQGLRVVKYQMNFFLVMSLVDRSGKLDNFDLGNLIASQLQDPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP +L T ++ N G R Sbjct: 170 PGVGDFQLFGSP-YAMRIWLDPGKLNSYQLTPTDVASAIREQNVQVSSGQLGGLPTRSGV 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V K ++ + + + Sbjct: 229 QLNATVLGKTRMT-------------TPSQFDEILVKVNPDGSQVRVKDVGRAELGADSF 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T++ L +A I Sbjct: 276 AISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYLPDGVEVIYPYDTTPVVEA 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + L+ ++ + ++ T ALL G + + ++ Sbjct: 336 SIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLLATFALLPYFGLNINVLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + + S + + + + V Sbjct: 396 YAMVLAIGLLVDDAIVVVENVERLMHDEGLSPLEATRKSMDQISGALVGIGMVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + FFGG + FAIT+ + + +S+ A+ A+ + I R Sbjct: 456 MAFFGGSAGIIYQQFAITIVVCMGLSILVALVFTPALCVTILKAPEGNSHHERKGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + + + ++ + +G + + V Sbjct: 516 NRIFDRGTRRFERGVGAMLKGRGRYLLAFLLITGGTGYLFTQIPKAFLPNEDQGLMMIEV 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 L+ ++ + + E V G VL K Sbjct: 576 RTPANASAERTEGVLQEVRDYLANDEGALVEHFMTVNGFNFAGRGQNSGLVLITFKDWKE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 + + + ++ ++ + Sbjct: 636 RHGAGQDVFSIAQRANQHFAKIKDASVMAFV 666 Score = 79.7 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 88/243 (36%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V + V IS Q D L G+ + ++ + ++ + Sbjct: 258 SQVRVKDVGRAELGADSFAISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYL 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705 P + I + + + + + + +++ + L + + + Sbjct: 318 PDGVEVIYPYDTTPVVEASIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T FG+ N+ + A++ IG V+D +VV + + ++ +S + KS+ Sbjct: 378 ATFALLPYFGLNINVLTMYAMVLAIGLLVDDAIVVVENV--ERLMHDEGLSPLEATRKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 ++ G V M +PMA +GGS + FAI + + ++ ++ + + Sbjct: 436 DQISGALVGIGMVLSAVFVPMAFFGGSAGIIYQQFAITIVVCMGLSILVALVFTPALCVT 495 Query: 823 IYD 825 I Sbjct: 496 ILK 498 Score = 59.3 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 34/259 (13%), Positives = 78/259 (30%), Gaps = 10/259 (3%) Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + + + V S + + N L Sbjct: 778 RISPEDFDKWYVRNSLGQMVPFSAFATGEWVNGSPKLERYGGISSLNILGEPAPGYSTGD 837 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689 A + E++++ I T + E + L+ + I L + Sbjct: 838 AMIAIAEIMQQLPAGIGLSYTGLSYEEIQTGDQAPLLYA-----LTVLIVFLCLAALYES 892 Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 W + I + L I + + ++ ++T +G S + +++ + ++ + Sbjct: 893 WSVPVSVIMVVPLGILGAVLATLWRDLTADVYFQVGLMTTVGLSAKNAILIVEFAKELYE 952 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806 ++ L + TS+A VLPMA+ G S A + G++ Sbjct: 953 KE--GYPIVKAAIEAAKLRLRPILMTSLAFTFGVLPMAIASGAGAGSQHSIATGVVGGMI 1010 Query: 807 VAASSSIFIAAPILLFIYD 825 A ++F + + Sbjct: 1011 TATVLAVFFVPLFYVVVVK 1029 >gi|261342743|ref|ZP_05970601.1| multidrug resistance protein MdtF [Enterobacter cancerogenus ATCC 35316] gi|288315396|gb|EFC54334.1| multidrug resistance protein MdtF [Enterobacter cancerogenus ATCC 35316] Length = 1037 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 72/684 (10%), Positives = 183/684 (26%), Gaps = 43/684 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +L ++ G L L + + ++P+ P Sbjct: 7 QRPVFAWVLAIILMIAGGLAIL-----KLPVAQYPTIAPPAV---------AVTATYPGA 52 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120 + V + ++ + + + N ITL+F + +V LQ Sbjct: 53 DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGNVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 L + ++ + ++++ D + S + D I + Sbjct: 113 LAMPLLPQEVQQQGIGVEKSSSSFLLVAGFVSDNKSLSQDDISDYVASNVKDAISRTSGV 172 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 + D + + + T + NN G Sbjct: 173 GDVQLFGAQ-YAMRIWLDSNAMNKYQLTPLDVINQLKTQNNQIAAGQLGGTPSIPGQQLN 231 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 + + + + I Sbjct: 232 ASIIAQTRL-------------KSPEEFGRVTLKVNPDGSMVHLKDVARIELGGENYNMV 278 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 + + T A L+ + S Sbjct: 279 TKINGQAATGLGIKLATGANALDTAAAIKSKLAQLQPFFPQGLRVVYPYDTTPFVKISIH 338 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 T LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+ Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAILAAFGFSINTLTMFGM 398 Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479 VL IGL VD I+V E + +++ + + + + + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMVEDKLPPKEATQKSMEQIQGALVGIAMVLSAVFIPMAF 458 Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526 FGG R F++T+ ++ +S+ A+ + A+ + + + Sbjct: 459 FGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCATLLKPVSGDHHEKKGGFFGWFNAL 518 Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586 + ++ + + + I+ ++ L + +G V Sbjct: 519 FDRSVDHYSNSVSGILRKTGRYLLVYLIIVGGMAVLFLRLPTSFLPEEDQGVFMTMVQLP 578 Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 + L+ +Q ++ + + E F V G +K Sbjct: 579 AGATQMRTQKVLDQVQDYYLTKEKANVESVFTVNGFSFSGQGQNSGIAFVSLKPWEERPG 638 Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670 + + K ++ + Sbjct: 639 KENGVGAIVSRATKAFSQIKDGLV 662 Score = 75.9 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 6/243 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + ++ + L +++ ++ ++ Sbjct: 258 SMVHLKDVARIELGGENYNMVTKINGQAATGLGIKLATGANALDTAAAIKSKLAQLQPFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + I + + + + I + + +++ + L + + + Sbjct: 318 PQGLRVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQNLRATLIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T A FG N + ++ IG V+D +VV + + + + ++ KS+ Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEDKLPPKEATQKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822 + G V +M +PMA +GGS F++ + + ++ ++ + + Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCAT 495 Query: 823 IYD 825 + Sbjct: 496 LLK 498 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 68/193 (35%), Gaps = 7/193 (3%) Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684 G+S E + + L + G L + IS I + + + Sbjct: 828 GESAPGKSTGEAMALMESLASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887 Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743 ++ W + + L + L +L G+ ++ +LT IG + + +++ + Sbjct: 888 AALYESWSIPFSVMLVVPLGVIGALLAASLRGLNNDVYFQVGLLTTIGLAAKNAILIVEF 947 Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800 + M + ++ L + TS+A + V+P+ + G + Sbjct: 948 AKDLMDKEGKG--IIEATLEASRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTG 1005 Query: 801 MAFGIVVAASSSI 813 + G++ A +I Sbjct: 1006 VMGGMLSATLLAI 1018 >gi|167835620|ref|ZP_02462503.1| inner membrane multidrug efflux protein BpeB [Burkholderia thailandensis MSMB43] Length = 1066 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 65/574 (11%), Positives = 156/574 (27%), Gaps = 46/574 (8%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+ + ++P+ P + + + Sbjct: 8 RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + + S IT++FA + +V Sbjct: 50 PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 L L ++ L T +++ N + + + + + D I Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + DP++L T ++ N G G Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTKLTNYGLTPVDVTTAISAQNVQIAGGQLGGTPAVPGT 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 Q + + + + + + IG Sbjct: 229 VLQATITEATLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T + + + Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSTYFPHGLVVKYPYDTTPFVRL 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +V+++ + + ++ ++ + ++ T A++S++G ++ + S+ Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSM 395 Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 G+VL IGL VD I+V E + + + + + + V Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKAMGQITGALVGVALVLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + F GG R F++T+ ++++S+ A+ + A+ I +K I Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567 F +R S L + Sbjct: 511 FFGWFNRTFNSSRDKYHVGVHHVIKRSGRWLIIY 544 Score = 76.7 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + + + L +++A + + +++ Sbjct: 258 SQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSTYF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P + R I + + ++ + + + +++ + + + + + Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T ++ G N+ ++ ++ IG V+D +VV + + + + ++ K++ Sbjct: 378 GTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKAM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 + G V ++ +P+A GGSV F++ + +V++ ++ + + Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492 Score = 72.4 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 79/216 (36%), Gaps = 8/216 (3%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + ++G ++ Q PG S Q K + + + Sbjct: 816 ERYNGISAMEIQGQAAPGKSTGQAMTAMEALAKKLPTGIGYSWTGLSFQEIQSGSQAPIL 875 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + +++ + + + W I + L + L L G+E ++ +LT Sbjct: 876 YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788 +G S + +++ + R+ + T + + ++ L + TS+A + VLP+A+ Sbjct: 933 TVGLSAKNAILIVEFARELQR--TEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990 Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 G + + + G++ A +IF+ + Sbjct: 991 SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026 Score = 59.3 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 62/519 (11%), Positives = 137/519 (26%), Gaps = 38/519 (7%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 R+ WL+I ++I +GLL + P + G + Sbjct: 536 RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589 Query: 62 EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121 + + L+ D + S G Q + + D +++ KV + Sbjct: 590 LANISDYLLKQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSANQKVQALIGR 649 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + + K L++ I + + D ++ + + + +Q+ + Sbjct: 650 MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDSAGLGHDALMAARNQLLGMAAKD 708 Query: 182 QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 L R Q + D + L T + + Sbjct: 709 PTLQGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 V + ++ G + P P + Sbjct: 753 --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTY 810 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + I A TA A + + + + + Sbjct: 811 GSPKLERYNGISAMEIQGQAAPGKSTGQAMTAMEALAKKLPTGIGYSWTGLSFQEIQSGS 870 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 AI +V + L + + L VI L +L G + Sbjct: 871 ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926 Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 G++ +GL+ + IL+ E RE + + + I +++ ++ + Sbjct: 927 QVGLLTTVGLSAKNAILIVEFARELQRTEKMGPIEAALEAARLRLRPILMTSLAFILGVL 986 Query: 476 VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511 L G + + ++ + F AI ++ Sbjct: 987 PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025 >gi|78061148|ref|YP_371056.1| hydrophobe/amphiphile efflux pump, HAE1 [Burkholderia sp. 383] gi|77969033|gb|ABB10412.1| Hydrophobe/amphiphile efflux pump, HAE1 [Burkholderia sp. 383] Length = 1066 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 68/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + +L +I G++ + +P +P + I Sbjct: 10 RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + +E + ++ N IT++F + V + Sbjct: 56 PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 +L D ++ + T ++ + D++ + Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDDRYDMTYLRNYALINVKDRLSRIQGVG 175 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 Q + DP ++ Q + + N + G Q Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQL 235 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 V + + + + I + Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDVARIKLDASEYGLRS 282 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 +L + + + A L+ + S Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV+IV+ + + + L+ ++ +++I T +LL G ++ S+ G+V Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLAFGYSINALSLFGMV 402 Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480 L IG+ VD I+V E + + + I +T + V L F Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGMNARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462 Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538 G + FA+T+ +S +IS F ++++ A+ +++ K + + L Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522 Query: 539 AIQFMRAR 546 + R Sbjct: 523 GFNKVFHR 530 Score = 56.2 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%) Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748 L I + + I L L + N+ ++ L+G S + +++ + R+ Sbjct: 902 SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959 Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805 L + + ++ L + TS+A + V+P+ G + + + + FG+ Sbjct: 960 -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018 Query: 806 VVAASSSIFIAAPILLFIY 824 + + + + + Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037 Score = 51.2 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 90/254 (35%), Gaps = 14/254 (5%) Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640 + V ++ +R + V + ++ + V+K Sbjct: 252 IVVKTTPDGGVTHLRDVARIKLDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311 Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695 + E+ + + +R I V+ + + A+ + + W +L Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 370 Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755 + + + I T FG N ++ ++ IG V+D +VV + + +N+ + + Sbjct: 371 PLIAVPVSIIGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ESGM 427 Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811 + R K++ E G + ++V + G FA+ +A V++A + Sbjct: 428 NARAATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486 Query: 812 SIFIAAPILLFIYD 825 S+ ++ + + Sbjct: 487 SLTLSPALSAILLK 500 >gi|307720506|ref|YP_003891646.1| protein translocase subunit secF [Sulfurimonas autotrophica DSM 16294] gi|306978599|gb|ADN08634.1| protein translocase subunit secF [Sulfurimonas autotrophica DSM 16294] Length = 323 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 93/294 (31%), Positives = 165/294 (56%), Gaps = 3/294 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 FM + S + + S +L T GLNYGIDF GG + V + Sbjct: 1 MEFFKYSRTFDFMSKSKLAMLFSTILVLASYAILATKGLNYGIDFAGGTVVQVKYDTKAP 60 Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650 + +R L++ ++ D + + G + +V + T+ + V +++ + Sbjct: 61 IKAMREKLKANKLFDGASISEFGSPDEVVIR--MKTTTGNVTQDIGDVTREVLKGTGAFE 118 Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710 ++ +IVGPK+ EL KGI+ ++++ +++LIY+ RF+W FA+ +I L+ D++ +G Sbjct: 119 VRRVDIVGPKVGSELKEKGIMSLVLAILSILIYVAFRFEWRFAVASIVALVHDVSIAMGA 178 Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770 ALF I+ NL +AA+LTL+GYS+ND ++V+DR+R+ + + + ++I++SI TL Sbjct: 179 VALFAIDVNLDVLAAILTLLGYSLNDTIIVFDRIREGITK-SKKANLTEIINESITRTLA 237 Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 R+ TS+ F V + ++GG +I +FA + GI+V SSIF+A+PIL+F Sbjct: 238 RTTLTSLTTFFVVFTLFMFGGEIIHAFAFTLLVGIIVGTYSSIFVASPILIFFG 291 >gi|221369327|ref|YP_002520423.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rhodobacter sphaeroides KD131] gi|221162379|gb|ACM03350.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rhodobacter sphaeroides KD131] Length = 1039 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 70/622 (11%), Positives = 173/622 (27%), Gaps = 37/622 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G+L L + + ++PS P + Sbjct: 8 RPVFAWVIAIVIMALGVLSIL-----RLPVSQYPSIAPPAVV---------IGATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 + V + + + L S +ITL+F + +V L Sbjct: 54 AETVTDTVTQVIEREMTGLDGLRYISSSSTSTGVAQITLTFELGTDPDIAQVQVQNKLSQ 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L + + +++ D A E + + ++ I Sbjct: 114 AQALLPQAVVRQGVTVRKSSAGFLMVIAMTSDNGAYSASELADYMSSNMVESISRLPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L + + ++ N FG R + Q Sbjct: 174 SVQVFGSQ-HAMRIWLDPNKLNAYDLSPSDVTAAVSAQNAQISAGSFGARPAPEGQQLQA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + E + Sbjct: 233 TITAQSLL-------------QTPEDFEQIVLRAETDGGLVLLRDVARVELGAQSYEIDG 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T + L A V S Sbjct: 280 RYNRSPASGMAIQLASGANALDTADVVRAKVDELAAFFPEGMTYEVPYDTTPFVRISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++V+ + + + L+ ++ + ++ T +++ LG ++ ++ +V Sbjct: 340 VVKTLIEAIVLVVLVMLLFLQNIRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMV 399 Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFF 459 Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFL 533 G G + F+IT+ ++ +S+ A+++ A+ I++ + Sbjct: 460 GGSTGEIYKQFSITIVSAMALSVLVALTLTPALCATILKRGHHSARRGPVGWFNRGFDAT 519 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + R + + + I + + + + + + Sbjct: 520 TRGYGGLVGRVVRRPVLMMVLFGVIVAGMVTLFQRTPTAFLPDEDQGVLITLIQTPSGAT 579 Query: 594 VRSNLESLQIGDISFQNFDGEK 615 L +++ + + +GE Sbjct: 580 AERTLAAIKEVENYWLEKEGEN 601 Score = 65.5 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 5/140 (3%) Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 L + + + T G A G N + A++ IG V+D +VV + + Sbjct: 362 IRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMVLAIGLLVDDAIVVVENV--ERI 419 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806 + + KS++E G V +M +PMA +G G + F+I + + Sbjct: 420 MEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFFGGSTGEIYKQFSITIVSAMA 479 Query: 807 VAASSSIFIAAPILLFIYDW 826 ++ ++ + + I Sbjct: 480 LSVLVALTLTPALCATILKR 499 Score = 52.0 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 72/252 (28%), Gaps = 15/252 (5%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 D ++ V LS ++ N + Sbjct: 772 PWARTDPDDLDLWRIPNKDGEFVALSTFADQTWFYGPQQVARYNAVRSMEIQGQPVPGIS 831 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 A + + + T + E L+ ++S A+ + + Sbjct: 832 SGEAMAEMERLAAQLPPGFALEWTGLSLEEREAGDQASLL------FLLSVGAVFLCLAA 885 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIGYSVNDKVVVYDRM 744 ++ W + + + + I L A G + N +LT++G + + +++ + Sbjct: 886 LYESWSVPIAVLLAMPVGILGAL-LGAWAGHQANGVYFQVGLLTVVGLTGKNGIMIVEFA 944 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801 R + I + + TS+A + V+P+ + G + + Sbjct: 945 R---SRLAQGEPLLEAIRHAAVLRFRPILMTSLAFSLGVVPLVLSTGAGAGARRAIGDGI 1001 Query: 802 AFGIVVAASSSI 813 G + I Sbjct: 1002 LGGTITGTLLGI 1013 >gi|126464782|ref|YP_001045895.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rhodobacter sphaeroides ATCC 17029] gi|126106593|gb|ABN79123.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rhodobacter sphaeroides ATCC 17029] Length = 1039 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 70/622 (11%), Positives = 173/622 (27%), Gaps = 37/622 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G+L L + + ++PS P + Sbjct: 8 RPVFAWVIAIVIMALGVLSIL-----RLPVSQYPSIAPPAVV---------IGATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 + V + + + L S +ITL+F + +V L Sbjct: 54 AETVTDTVTQVIEREMTGLDGLRYISSSSTSTGVAQITLTFELGTDPDIAQVQVQNKLSQ 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L + + +++ D A E + + ++ I Sbjct: 114 AQALLPQAVVRQGVTVRKSSAGFLMVIAMTSDNGAYSASELADYMSSNMVESISRLPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L + + ++ N FG R + Q Sbjct: 174 SVQVFGSQ-HAMRIWLDPNKLNAYDLSPSDVTAAVSAQNAQISAGSFGARPAPEGQQLQA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + E + Sbjct: 233 TITAQSLL-------------QTPEDFEQIVLRAETDGGLVLLRDVARVELGAQSYEIDG 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T + L A V S Sbjct: 280 RYNRSPASGMAIQLASGANALDTADVVRAKVDELAAFFPEGMTYEVPYDTTPFVRISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++V+ + + + L+ ++ + ++ T +++ LG ++ ++ +V Sbjct: 340 VVKTLIEAIVLVVLVMLLFLQNIRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMV 399 Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFF 459 Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFL 533 G G + F+IT+ ++ +S+ A+++ A+ I++ + Sbjct: 460 GGSTGEIYKQFSITIVSAMALSVLVALTLTPALCATILKRGHHSARRGPVGWFNRGFDAT 519 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + R + + + I + + + + + + Sbjct: 520 TRGYGGLVGRVVRRPVLMMVLFGVIVAGMVTLFQRTPTAFLPDEDQGVLITLIQTPSGAT 579 Query: 594 VRSNLESLQIGDISFQNFDGEK 615 L +++ + + +GE Sbjct: 580 AERTLAAIKEVENYWLEKEGEN 601 Score = 65.5 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 5/140 (3%) Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 L + + + T G A G N + A++ IG V+D +VV + + Sbjct: 362 IRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMVLAIGLLVDDAIVVVENV--ERI 419 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806 + + KS++E G V +M +PMA +G G + F+I + + Sbjct: 420 MEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFFGGSTGEIYKQFSITIVSAMA 479 Query: 807 VAASSSIFIAAPILLFIYDW 826 ++ ++ + + I Sbjct: 480 LSVLVALTLTPALCATILKR 499 Score = 52.0 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 72/252 (28%), Gaps = 15/252 (5%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 D ++ V LS ++ N + Sbjct: 772 PWARTDPDDLDLWRIPNKDGEFVALSTFADQTWFYGPQQVARYNAVRSMEIQGQPVPGIS 831 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 A + + + T + E L+ ++S A+ + + Sbjct: 832 SGEAMAEMERLAAQLPPGFALEWTGLSLEEREAGDQASLL------FLLSVGAVFLCLAA 885 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIGYSVNDKVVVYDRM 744 ++ W + + + + I L A G + N +LT++G + + +++ + Sbjct: 886 LYESWSVPIAVLLAMPVGILGAL-LGAWAGHQANGVYFQVGLLTVVGLTGKNGIMIVEFA 944 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801 R + I + + TS+A + V+P+ + G + + Sbjct: 945 R---SRLAQGEPLLEAIRHAAVLRFRPILMTSLAFSLGVVPLVLSTGAGAGARRAIGDGI 1001 Query: 802 AFGIVVAASSSI 813 G + I Sbjct: 1002 LGGTITGTLLGI 1013 >gi|317122084|ref|YP_004102087.1| protein-export membrane protein SecF [Thermaerobacter marianensis DSM 12885] gi|315592064|gb|ADU51360.1| protein-export membrane protein SecF [Thermaerobacter marianensis DSM 12885] Length = 295 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 151/287 (52%), Gaps = 7/287 (2%) Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596 F+R+R +S+L + GLNY ++F GG + +PV+ +RS Sbjct: 1 MTGFSFVRSRGVAFALSLLLLAAGMVAWAVRGLNYNVEFTGGTAWTLRFEKPVEAGAIRS 60 Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656 L + D Q + + +R + + V + + + V ++ + Sbjct: 61 VLAEQGLDDAIVQLSEEGRVAFLRTPHVD------QATQQKVLEALGKDVAPVQLEQFDS 114 Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716 + P I RE+ KG++ + ++ + M++Y+ +RF+++FA+ AI ++ D+ +G FAL Sbjct: 115 ISPVIGREIKEKGLLALGLATVGMIVYMTVRFEFWFAVAAILAMLHDVFMVVGLFALLQW 174 Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 + + + +AA+LT+ GYS+ND VVV+DR+R+N++L +L+D+SI + L RS+ T Sbjct: 175 QVDASFIAALLTVFGYSINDTVVVFDRIRENLRL-RRKEPLDELVDRSIRQVLRRSILTG 233 Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823 +++ + +GG I +F+ M FGI SSIF+A+P+ + Sbjct: 234 TTTLLALAAVFAFGGETIRAFSGAMFFGIFFGTYSSIFVASPLWYVL 280 >gi|311693824|gb|ADP96697.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [marine bacterium HP15] Length = 1034 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 79/622 (12%), Positives = 186/622 (29%), Gaps = 38/622 (6%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I GLL L ++ +P P + + L Sbjct: 9 RPKFAFVISILITLAGLLA-----LRILPVNMYPDMAPP---------QIQVNASLPGAS 54 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 V + ++ + ++ + KITL+F + V + Sbjct: 55 SQVVEEAVIRPVEQQLNGVEGMIYIESTASSDGTAKITLTFESGTDTDIAQVNVQNRVAL 114 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 L + ++ +V + + ++ ++ + S ++ +G Sbjct: 115 AEPFLPDEVRRQGVVVSKQAGNMLMGINLTSERPDLDGVFLSNYASNNLVEALGRVPGVG 174 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP R+ L T A+++ N G + Y Sbjct: 175 SAEVMGAKDYSMRVWLDPRRMASLDVTVAEVAAALREQNQIVAAGKLGQPPVPAGQQFVY 234 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 ++ + +S + I I Sbjct: 235 SIQTRERLS-------------DPDEFAQTILRSRPDGGFVRLRDVGRIELGSRSYTSTA 281 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 L + + E L V S S Sbjct: 282 KLNNQDTAFLVIYQLPDANALEVAERVKALVEEASVSFPAGVNYTVLYDTTEFISRSISE 341 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T GLV++V+F+ + + L+ +I +++I T A++S+LG ++ ++ G+V Sbjct: 342 VIVTLFQAVGLVILVVFLFLQNWRATLIPSIAIPVSLIGTFAVMSVLGYSINTITLFGLV 401 Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IG+ VD I+V E + + + ++ + + + + L V + F Sbjct: 402 LAIGIVVDDAIVVIENVERILAEEKLPIREAVTKAMAEVTGPVIATTLVLLAVFVPVAFM 461 Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 G + F++T+ ++++IS A+++ A+ + ++ K+I + Sbjct: 462 PGITGKLYQQFSVTISVAVIISSINALTLSPALCVALLGRSGDKAIGWLRPFEVAITRTT 521 Query: 538 IAIQF------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 + GV ++++ + + +G + + V L Sbjct: 522 SGYSKLVVQLLRKGALVGVALAVILVAGAGLFKSVPSAFVPPEDQGFLFVDVQLPDAASL 581 Query: 592 SVVRSNLESLQIGDISFQNFDG 613 + L + + Sbjct: 582 ERTEAVLTKVTDMVLEDPAVTD 603 Score = 85.9 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 80/225 (35%), Gaps = 9/225 (4%) Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673 L V E VK + E V + + R + Sbjct: 284 NNQDTAFLVIYQLPDANALEVAERVKALVEEASVSFPAGVNYTVLYDTTEFISRSISEVI 343 Query: 674 IISAIAMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 + A+ + I + F W L + + + T ++ G N + ++ Sbjct: 344 VTLFQAVGLVILVVFLFLQNWRATLIPSIAIPVSLIGTFAVMSVLGYSINTITLFGLVLA 403 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789 IG V+D +VV + + L + R+ + K++ E G + T++ +P+A Sbjct: 404 IGIVVDDAIVVIENV--ERILAEEKLPIREAVTKAMAEVTGPVIATTLVLLAVFVPVAFM 461 Query: 790 GGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G F++ ++ +++++ +++ ++ + + + A Sbjct: 462 PGITGKLYQQFSVTISVAVIISSINALTLSPALCVALLGRSGDKA 506 Score = 59.7 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 79/223 (35%), Gaps = 9/223 (4%) Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 ++F ++ A + E+ + +E+ + GVI Sbjct: 812 QHFNLKRSVTISGEAAPGFASGDAIATMEELSQSLPQGYEFSWAGQSLQEIQAGNLAGVI 871 Query: 675 ISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731 + +Y+++ W + + + L + + L G+ N+ A ++ LIG Sbjct: 872 FLLALVFVYLFLVAQYESWTLPVAVLGAVPLALAGAMAGLWLVGLANNIYAQVGLVLLIG 931 Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788 S +++ + M+L + +S + K+ + T+++ + VLP+ Sbjct: 932 LSTKTAILIVEFA---MQLRQSGMSTAEAAQKAAVLRFRAVLMTALSFVLGVLPLVFASG 988 Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 G + S I + G+V A + +I R + Sbjct: 989 AGAASRVSLGITVLSGMVAATVLGTLLVPVFYKWIQSVRDRRQ 1031 >gi|254227758|ref|ZP_04921189.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Vibrio sp. Ex25] gi|151939800|gb|EDN58627.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Vibrio sp. Ex25] Length = 1050 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 78/692 (11%), Positives = 182/692 (26%), Gaps = 48/692 (6%) Query: 2 RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61 + + +++ ++ G + + +P P + + Sbjct: 8 QRPKFALVISIILTLAGAISLA-----ILPVAEYPQISPP-------------SVSVSAY 49 Query: 62 EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116 ++ D + + + E + S + + + ++F + V Sbjct: 50 YTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 + + SKL + + + +++ I DQ+ Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236 ++ + + DP ++ L TT+ + N G + Sbjct: 170 AKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYAALAEQNVQVAAGRVGAAPYNNP 229 Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296 Q+ + K + + + + + Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANPNGSTVYLKDVARVELGKKF 276 Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356 + S ++ + + + L L Sbjct: 277 YDGNGKFRGQDASIVALSLQSDANALESGQAVMELLEDLSKNFPEGMAYETSYDTTVFVS 336 Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416 S T LV+ V ++ + + L+ +I +++I T A++ G T+ + Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQATGFTINTVT 396 Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471 + G++L IG+ VD ILV E + K+ S + + I S + Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATLLAMKEVTGPIITSTLVLLAVF 456 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525 I +L G R FA+T+ +S++IS A+++ A+ + ++ + Sbjct: 457 IPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTANWFQAFNR 516 Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585 ++ + + + T + KG + + V Sbjct: 517 GLERITTRYGQVAGFLVKKSLLLVTFFIVAIAAVTFFAKTTSTAFVPQEDKGILLVNVQL 576 Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645 LS L DG + V + T Sbjct: 577 PDSASLSRTEEVTNDLMNMIGEEPGVDGVTVANGYSFMTGAAASNGASVFIKLHDWDTRN 636 Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677 I R V+ + Sbjct: 637 SLQGEHSANAIAARINGRAATE-LPQAVVFAM 667 Score = 75.9 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 86/235 (36%), Gaps = 5/235 (2%) Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 V L V + D + + + + + +++ + + + + +++ P Sbjct: 262 VYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESGQAVMELLEDLSKNFPE 321 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707 T E I+ + +I + + ++ L + + + + T Sbjct: 322 GMAYETSYDTTVFVSESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381 Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767 G N + ++ IG V+D ++V + + +IS R ++ E Sbjct: 382 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLLAMKE 440 Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 G + +++ +P+A+ G FA+ + +V+++ +++ ++ + Sbjct: 441 VTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495 Score = 54.7 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 52/447 (11%), Positives = 116/447 (25%), Gaps = 26/447 (5%) Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466 L+ P + G+ + G + + + + + + G A + Sbjct: 592 LMNMIGEEPGVDGVTVANGYSFMTGAAASNGASVFIKLHDWDTRNSLQGEHSANAIAARI 651 Query: 467 NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521 N + V+F G AV G G ++ S + M I + Sbjct: 652 NGRAATELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLSMVMGEMIQAANQAP 711 Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581 I + +P L + +N F ++ Sbjct: 712 EIAYTFSTFRANVPHYYVDIDREKAQQLGISLSSIFQTLQGNLGSLYVNDFTIFGKNFRV 771 Query: 582 GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629 + A+ V S S + D + + Sbjct: 772 TMQADSQHRSSMEDLERFHVRSSNGDMVPLSTLVSYEQVFEPDVAWRYNMYRSAIIQGQP 831 Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685 A + + Q ++ + + G + + + IY + Sbjct: 832 APGYSSGDAIAAMERVAAEVLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891 Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745 W L I + + + L G NL A ++ LI + + +++ + + Sbjct: 892 QYESWSIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951 Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802 + + K TS + + + P+ G+ S + + Sbjct: 952 QEREE--KDADIDSAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGVSLI 1009 Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829 G++ + F+ + R K Sbjct: 1010 GGLLCVLLAGTFLIPGFYALVQRQREK 1036 >gi|288817990|ref|YP_003432337.1| protein-export membrane protein [Hydrogenobacter thermophilus TK-6] gi|288787389|dbj|BAI69136.1| protein-export membrane protein [Hydrogenobacter thermophilus TK-6] gi|308751589|gb|ADO45072.1| protein-export membrane protein SecD [Hydrogenobacter thermophilus TK-6] Length = 497 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 154/485 (31%), Positives = 263/485 (54%), Gaps = 18/485 (3%) Query: 42 NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101 ++LGLDL+GG ++LE D D + + Y+ ++ L+ GI V + ++ I + Sbjct: 25 KPVNLGLDLKGGISMLLEPDMDYALTQEYERYAKDIERKLRDAGINVLDVTSDKSGIKVE 84 Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161 D + ++I+ V+ D + +V+ + ++ I L + I ++ Sbjct: 85 VLDKKDIDSISQMVSK-----------DFPRFEVVSREKGQVLIKLKDDEIKKLKDSIAG 133 Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV---- 217 Q++E++R+RID++G+ + I ++ R+L++LPG D + + ++G TA + V Sbjct: 134 QTVEVLRRRIDELGVVQPVITKVSGDRVLVELPGVLDIDKAKSIIGKTALLELKLVVGSG 193 Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276 +K + +LVE I+G L A + D P V + Sbjct: 194 PKEVLEQKLNKDTELLPSRNPQEWFLVEKLPVITGADLKTAYTSTDEFG-APAVTFELTD 252 Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336 GAR F + T NIG+ LA+VLD +V++APVI + + QI+G FT E A LA +LR Sbjct: 253 RGARAFGDATEKNIGRRLAIVLDKKVMSAPVIRS-RITDRGQITGQFTPEEAKELAIVLR 311 Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396 AG+LP + ++E VG LG D+I + A + G +L+V ++ Y G+ A+ +I L Sbjct: 312 AGALPTNVKFLQETVVGPSLGRDAINQSIKAGIVGFILLVALLLGRYKVAGITANLAILL 371 Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456 N + A L LLGATLTLP IAGI+L +G+AVDSN+L+ ER++EE R S ++++G+ Sbjct: 372 NALFLWAGLVLLGATLTLPGIAGILLNMGIAVDSNVLIFERVKEELRSGSSPKKAVELGY 431 Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 R+ S ++D++IT LIA ++LF FG G V+GFA T+ + + S + + + + + + Sbjct: 432 RRSLSVVWDTHITLLIAALILFQFGSGPVKGFATTLTIGSIASFVSNVYFTKFFLDVLTK 491 Query: 517 YKKMK 521 +K Sbjct: 492 IGALK 496 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 76/173 (43%), Gaps = 4/173 (2%) Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712 +VGP + R+ I + I I+ I ++ + R+K + A ++L+ Sbjct: 323 QETVVGPSLGRDAINQSIKAGIVGFILLVALLLGRYKV-AGITANLAILLNALFLWAGLV 381 Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772 L G L +A +L +G +V+ V++++R+++ ++ + S + ++ +L Sbjct: 382 LLGATLTLPGIAGILLNMGIAVDSNVLIFERVKEELR---SGSSPKKAVELGYRRSLSVV 438 Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825 T + I+ L + +G + FA + G + + S+++ L + Sbjct: 439 WDTHITLLIAALILFQFGSGPVKGFATTLTIGSIASFVSNVYFTKFFLDVLTK 491 >gi|332560925|ref|ZP_08415243.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rhodobacter sphaeroides WS8N] gi|332274723|gb|EGJ20039.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rhodobacter sphaeroides WS8N] Length = 1039 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 70/622 (11%), Positives = 173/622 (27%), Gaps = 37/622 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I +G+L L + + ++PS P + Sbjct: 8 RPVFAWVIAIVIMALGVLSIL-----RLPVSQYPSIAPPAVV---------IGATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121 + V + + + L S +ITL+F + +V L Sbjct: 54 AETVTDTVTQVIEREMTGLDGLRYISSSSTSTGVAQITLTFELGTDPDIAQVQVQNKLSQ 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 + L + + +++ D A E + + ++ I Sbjct: 114 AQALLPQAVVRQGVTVRKSSAGFLMVIAMTSDNGAYSASELADYMSSNMVESISRLPGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + DP++L + + ++ N FG R + Q Sbjct: 174 SVQVFGSQ-HAMRIWLDPNKLNAYDLSPSDVTAAVSAQNAQISAGSFGARPAPEGQQLQA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 + + + + E + Sbjct: 233 TITAQSLL-------------QTPEDFEQIVLRAETDGGLVLLRDVARVELGAQSYEIDG 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + + T + L A V S Sbjct: 280 RYNRSPASGMAIQLASGANALDTADVVRAKVDELAAFFPEGMTYEVPYDTTPFVRISIEE 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++V+ + + + L+ ++ + ++ T +++ LG ++ ++ +V Sbjct: 340 VVKTLIEAIVLVVLVMLLFLQNIRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMV 399 Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + + + + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFF 459 Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFL 533 G G + F+IT+ ++ +S+ A+++ A+ I++ + Sbjct: 460 GGSTGEIYKQFSITIVSAMALSVLVALTLTPALCATILKRGHHTARRGPVGWFNRGFDAT 519 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 + R + + + I + + + + + + Sbjct: 520 TRGYGGLVGRVVRRPVLMMVLFGVIVAGMVTLFQRTPTAFLPDEDQGVLITLIQTPSGAT 579 Query: 594 VRSNLESLQIGDISFQNFDGEK 615 L +++ + + +GE Sbjct: 580 AERTLAAIKEVENYWLEKEGEN 601 Score = 65.5 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 5/140 (3%) Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 L + + + T G A G N + A++ IG V+D +VV + + Sbjct: 362 IRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMVLAIGLLVDDAIVVVENV--ERI 419 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806 + + KS++E G V +M +PMA +G G + F+I + + Sbjct: 420 MEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFFGGSTGEIYKQFSITIVSAMA 479 Query: 807 VAASSSIFIAAPILLFIYDW 826 ++ ++ + + I Sbjct: 480 LSVLVALTLTPALCATILKR 499 Score = 52.0 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 72/252 (28%), Gaps = 15/252 (5%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 D ++ V LS ++ N + Sbjct: 772 PWARTDPDDLDLWRIPNKDGEFVALSTFADQTWFYGPQQVARYNAVRSMEIQGQPVPGIS 831 Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 A + + + T + E L+ ++S A+ + + Sbjct: 832 SGEAMAEMERLAAQLPPGFALEWTGLSLEEREAGDQASLL------FLLSVGAVFLCLAA 885 Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIGYSVNDKVVVYDRM 744 ++ W + + + + I L A G + N +LT++G + + +++ + Sbjct: 886 LYESWSVPIAVLLAMPVGILGAL-LGAWAGHQANGVYFQVGLLTVVGLTGKNGIMIVEFA 944 Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801 R + I + + TS+A + V+P+ + G + + Sbjct: 945 R---SRLAQGEPLLEAIRHAAVLRFRPILMTSLAFSLGVVPLVLSTGAGAGARRAIGDGI 1001 Query: 802 AFGIVVAASSSI 813 G + I Sbjct: 1002 LGGTITGTLLGI 1013 >gi|332535605|ref|ZP_08411373.1| protein-export membrane protein SecF [Pseudoalteromonas haloplanktis ANT/505] gi|332034989|gb|EGI71510.1| protein-export membrane protein SecF [Pseudoalteromonas haloplanktis ANT/505] Length = 314 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 150/282 (53%), Gaps = 2/282 (0%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 R RF G+ +S + + S+ L GLN+G+DF GG ++ V+L ++S + Sbjct: 13 RLRFIGMLLSAMLVLLSVFTLTQKGLNFGLDFTGGYLTEFTTSQSVELKELQSFIAKNHN 72 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663 G+ G +F +R + + + + ++ +G ++ Sbjct: 73 GEFELT-AQGNSHFQLREAPSASTTSTTANSPDWQSAVTQNDDINAQVLSSAYIGSQVGD 131 Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723 EL +G + + + IA++IY+ +RF+W A+G++ L+ D+ LG F+L IEFNLT + Sbjct: 132 ELFDQGCLAMFAAMIAVMIYLAVRFEWRLAVGSVVALVHDLILVLGLFSLLQIEFNLTVL 191 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRSVYTSMAAFIS 782 A++L +IGYS+ND ++V DR+R+ +++ + + +S +I+ +I TL R++ TS + Sbjct: 192 ASLLAIIGYSLNDSIIVGDRVRELLRVQSNNVLSPATIINNAIKSTLTRTLITSGTTLAT 251 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 V + + G+ + FAI + GIVV SSI IAA + + Sbjct: 252 VASVWLLAGAPLQGFAIALFTGIVVGTFSSICIAATLPELLG 293 >gi|294138917|ref|YP_003554895.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12] gi|293325386|dbj|BAJ00117.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12] Length = 1047 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 71/691 (10%), Positives = 178/691 (25%), Gaps = 51/691 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ G+L + ++PS P +V+ Sbjct: 8 RPIFAWVIAIIVMLAGVLSIF-----GLPVSQYPSIAPPT-------------VVISASY 49 Query: 63 DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + + I S +ITL+F + +V Sbjct: 50 PGASAKTMEDSVTQVIEQRMTGIDNLRYISSTSDSFGNAQITLTFNAEADPDIAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ L + + + +++ + + + D + Sbjct: 110 KLQLAMPLLPQEVQAQGVKVNKSSSGFLMVLGFVSKDGSLDKNDIADYVASNIQDPMSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 + + DP +L Q T+ + N G Sbjct: 170 TGIGEIQLFGAQ-YAMRIWLDPLKLTQYKLTSIDIMASIREQNAQISAGQLGGSPSVGGQ 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297 V + + + I + + I Sbjct: 229 ELNATVSAQSRL-------------QTPEQFEQIIIKSDSSGANVYLKDVAKIELGAESY 275 Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357 + T ++ + Sbjct: 276 AVESFYNGKPAAGLAVKLATGANALATANAVRAKIEEMKPFFPQGIEVVYPYDTTPFVEQ 335 Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 S T LV +++++ + + L+ ++ + ++ T A+LS +G ++ ++ Sbjct: 336 SIEGVVHTLFEAVILVFLIMYLFLQNLRATLIPTIAVPVVLLGTFAILSAVGFSINTLTM 395 Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476 +VL IGL VD I+V E + + S + + + +T V Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLSPVEATKKSMDQITGALVGIGLTLSAVFVP 455 Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523 + F G R F++T+ ++ +S+ A+ + A+ + I Sbjct: 456 MAFMSGSTGVIYRQFSVTIVAAMGLSVMVALILTPALCATMLKPMKKGQTHINTGFFGWF 515 Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583 + + D +A R + L + + +G + Sbjct: 516 NRSFDKLTSRYTDSVAAMIKRTGRVMLIYLALVVAVGWIFMRMPTAFLPDEDQGIMFTQA 575 Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + + +E + ++ ++ + E F V G +K Sbjct: 576 ILPVNSTQESTQKVMEKVTDFYLNEESENVESVFSVSGFSFAGSGQNMGIAFVSLKDWTE 635 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674 +++ ++ + + Sbjct: 636 RKGAGQDVKSVAARAMGKFMQMKEAFVFAFV 666 Score = 69.7 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 81/250 (32%), Gaps = 6/250 (2%) Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643 + V L V + + L +++A + +++ Sbjct: 255 SSGANVYLKDVAKIELGAESYAVESFYNGKPAAGLAVKLATGANALATANAVRAKIEEMK 314 Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702 P + I + + + I + + +++ + L + + Sbjct: 315 PFFPQGIEVVYPYDTTPFVEQSIEGVVHTLFEAVILVFLIMYLFLQNLRATLIPTIAVPV 374 Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762 + T + G N + A++ IG V+D +VV + + + +S + Sbjct: 375 VLLGTFAILSAVGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPVEATK 432 Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 KS+++ G V + +PMA GS F++ + + ++ ++ + + Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSVTIVAAMGLSVMVALILTPAL 492 Query: 820 LLFIYDWRAK 829 + K Sbjct: 493 CATMLKPMKK 502 Score = 69.3 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 69/186 (37%), Gaps = 8/186 (4%) Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709 E G L + +S I + + + ++ W I + L I +L Sbjct: 853 FGVEWNGLSYEERLSGNQAPALYALSIIVVFLVLAALYESWSVPFSVILVVPLGIIGSLI 912 Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769 G+ ++ A+LT +G + + +++ + ++ Y + D ++ L Sbjct: 913 AMNARGLPNDVFFQVALLTTVGLATKNAILIVEFAKEY---YENGANLVDATLHAVRVRL 969 Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826 + TS+A + V+P+A+ G + + G++ A IF + + Sbjct: 970 RPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGGMMSATFMGIFFIPIFFVVVERM 1029 Query: 827 RAKNAR 832 +K + Sbjct: 1030 FSKREK 1035 >gi|320011896|gb|ADW06746.1| protein-export membrane protein SecF [Streptomyces flavogriseus ATCC 33331] Length = 366 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 82/301 (27%), Positives = 145/301 (48%), Gaps = 13/301 (4%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 F+ R G+SIL +I +I L GLN GI+FKGG V +S + Sbjct: 18 YDFIGKRKIWYGVSILITITAILGLAVSGLNMGIEFKGGAVFTTDTKAKVSVSQAHEDAV 77 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 + + Q +R+Q D+ ++ + + + N ++VGP Sbjct: 78 AASGHEAIVQELGNGG---LRIQITEVDTKKADQIKAQLSEDL---GIPEAKINADLVGP 131 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ K G+ I + +++Y+ I F+W A+ A+ LI DIT T+G +AL G E Sbjct: 132 SWGEQIANKAWAGLGIFMVLVVVYLAIAFEWRMAVAALIALIHDITITVGVYALVGFEVT 191 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777 V +LT++GYS+ D VVV+D +++ + T ++ ++ ++SIN TL RS+ T++ Sbjct: 192 PGTVIGLLTILGYSLYDTVVVFDSLKEGTQGITKQTRWTYSEIANRSINGTLVRSINTTV 251 Query: 778 AAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 A + V + GG V + ++ + G+ A SSIFIA P++ + + + Sbjct: 252 VALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLKEREPQIKA 311 Query: 833 I 833 + Sbjct: 312 L 312 >gi|303256594|ref|ZP_07342608.1| multidrug/solvent RND transporter TtgB [Burkholderiales bacterium 1_1_47] gi|330999232|ref|ZP_08322949.1| inner membrane multidrug efflux protein BpeB [Parasutterella excrementihominis YIT 11859] gi|302860085|gb|EFL83162.1| multidrug/solvent RND transporter TtgB [Burkholderiales bacterium 1_1_47] gi|329575090|gb|EGG56641.1| inner membrane multidrug efflux protein BpeB [Parasutterella excrementihominis YIT 11859] Length = 1045 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 77/686 (11%), Positives = 188/686 (27%), Gaps = 41/686 (5%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ +I G L L + +P P + Sbjct: 8 RPIFAWVIAIVIMLAGTLSIL-----NLPVSMYPQIAPP---------QVSISATYPGAS 53 Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121 + + ++ + L + ITL+FA + +V L Sbjct: 54 AKTIEDTVVQVIEQKMTGLDGYLYMSSTSESSGRINITLTFAAGTDPDMAQVQVQNRLSQ 113 Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181 S L ++ + + + + E ++ + + + Sbjct: 114 AQSSLPEVVQRLGVTVIKTTASFLKVIGLTSTDGSISSAELGDYLVSSIQEPLSRVDGVG 173 Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241 + + DP +L + T A + N G Sbjct: 174 EVEVFGS-AFAMRIWLDPEKLHEFSLTPADIKTAISTQNVQISSGQVGGLPAAKGTALNA 232 Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301 ++ + + + + F I K + Sbjct: 233 VITSSSLL-------------ETPEQFGAIFLKTQENGSQVFLRDVARIEKGPKMYEATA 279 Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361 + + T + L ++ S Sbjct: 280 FFNGKPTAGLAIKLASGANALLTSDLVDKKMEELSHFFPEKYEYVIPFDTTPFVRISIEG 339 Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421 T LV++V+++ + + L+ ++ + V+ T +L +G ++ + ++ +V Sbjct: 340 VIHTLLEAIVLVVLVMYLFLQNFRATLIPTIAVPVVVLGTFGILGAMGYSINMLTMFAMV 399 Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 L IGL VD I+V E + +++ S + + S+ + + V + FF Sbjct: 400 LAIGLLVDDAIVVVENVERVMDQERLSPHDATEKSMSQITGALVGIAMVLSAVFVPMAFF 459 Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537 GG R F++T+ ++ +S+ A+++ A+ I++ K + F + Sbjct: 460 GGSTGVIYRQFSVTIVAAMGLSVLVALTLTPALCATILKPIKHDKAEKGFFGWFNRWFNK 519 Query: 538 IA--------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 A R + + V ++ L + +G + + + Sbjct: 520 GAEGATSAVGYMTARWKRFIVIYGVIIGGVVFGFLKVPTAFMPDEDQGSLMVQIQLPEGS 579 Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649 + ++ +Q ++ + + V G +K P Sbjct: 580 TREQILPVVKRMQDYMLNEEKDSVQSVMTVVGFSLAGMGQNSAMAFVKLKDWSERPNPEQ 639 Query: 650 TIQNTEIVGPKISRELIRKGIVGVII 675 Q + + G + Sbjct: 640 KAQAVAARANRTLMSWKDSMVFGFAL 665 Score = 74.7 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 92/237 (38%), Gaps = 6/237 (2%) Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646 V L V + ++ + + L +++ + +++ ++++ Sbjct: 258 SQVFLRDVARIEKGPKMYEATAFFNGKPTAGLAIKLASGANALLTSDLVDKKMEELSHFF 317 Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705 P R I I ++ + + +++ +++ + + L + + + Sbjct: 318 PEKYEYVIPFDTTPFVRISIEGVIHTLLEAIVLVVLVMYLFLQNFRATLIPTIAVPVVVL 377 Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765 T G G N+ + A++ IG V+D +VV + + + +S D +KS+ Sbjct: 378 GTFGILGAMGYSINMLTMFAMVLAIGLLVDDAIVVVENV--ERVMDQERLSPHDATEKSM 435 Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819 ++ G V +M +PMA +GGS F++ + + ++ ++ + + Sbjct: 436 SQITGALVGIAMVLSAVFVPMAFFGGSTGVIYRQFSVTIVAAMGLSVLVALTLTPAL 492 Score = 71.3 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 79/230 (34%), Gaps = 12/230 (5%) Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668 + F+G ++ G + Q + K + + Sbjct: 813 ERFNGLGAVNIQGAPAAGFTTGQAMLAMEEIAKALPYGFGIAWNGISFQEQQAGSQTGAL 872 Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728 + ++I + + + W + I + L + LG FG+ ++ +LT Sbjct: 873 YTLSILIVFLCLA---ALYESWSIPIAVILVVPLGVIGALGMTGAFGMNNDVYFQVGLLT 929 Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA- 787 IG + +++ + ++ L+ S ++ + + TS+A + VLP+A Sbjct: 930 TIGLVSKNAILIVEFAKE---LHEKGESIVHAAAHAVRMRIRPIMMTSLAFGLGVLPLAK 986 Query: 788 --VWGGSVIGSFAIPMAFGIVVAASSSIFIAA---PILLFIYDWRAKNAR 832 G + I + G++ IF +++ ++ + K + Sbjct: 987 ATGAGSGAQNAIGIGVLGGMLTGTFLCIFFVPLFYVLIVKLFGDKIKKKK 1036 >gi|323706429|ref|ZP_08117991.1| protein-export membrane protein SecF [Thermoanaerobacterium xylanolyticum LX-11] gi|323534214|gb|EGB24003.1| protein-export membrane protein SecF [Thermoanaerobacterium xylanolyticum LX-11] Length = 312 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 151/303 (49%), Gaps = 5/303 (1%) Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590 I + IS + + + LFT GLN+G+DF GG + ++PV Sbjct: 1 MRWNNIKWNIDVIGKTKVWFTISGIIILAGLIALFTMGLNWGLDFTGGTVVEFNMHKPVT 60 Query: 591 LS--VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 ++ +N+ S G N V + D +T V+ ++ K V Sbjct: 61 IAMNNEITNILKSNGVKDSQVKAIGPNNTHVSITTPSLDDKTRTAVINAIESKYKLTVKD 120 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + +++ V I +E+ I+ ++A+ +LIYI RF + A+ LI DI + Sbjct: 121 --LVSSQNVSASIGKEMQFGTILASAVAALLILIYIGFRFNFEMGAAAVLALIHDILIMI 178 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 +AL I + VAA+LT+ GYS+ND +V++DR+R N+KL S++++ + S+NET Sbjct: 179 SAYALLRIVVDTPFVAAILTVFGYSINDTIVIFDRIRDNIKLMRK-ASYKEIANVSVNET 237 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828 + RS+ T M + ++ M +G + I SFA+P+ GI A SSIFIA+P+ + D Sbjct: 238 MTRSINTVMTVLLMLILMYFFGPASIKSFALPLLVGITSGAYSSIFIASPLWVIFKDKEG 297 Query: 829 KNA 831 KN Sbjct: 298 KNR 300 >gi|152991991|ref|YP_001357712.1| preprotein translocase subunit SecF [Sulfurovum sp. NBC37-1] gi|151423852|dbj|BAF71355.1| preprotein translocase subunit F [Sulfurovum sp. NBC37-1] Length = 323 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 153/282 (54%), Gaps = 3/282 (1%) Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602 M +S++ I S+ L+ T G NYGIDF GG + V + VR + + Sbjct: 13 MSQSKRFGILSVVVVILSLGLILTKGFNYGIDFAGGTLVQVKYEGKAPIEKVRKAISVDK 72 Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662 + + + G + +V S A L ++ + ++ ++VG K+ Sbjct: 73 NYESATVTYFGSDDEVVIRTKM--SSKALGEDLSDKMTQLLKGTGKFEVRRVDMVGAKVG 130 Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722 EL KG++ + ++ + +LIY+ RF+W FA+ ++ LI D+T +G LFGIE NL Sbjct: 131 SELREKGLMSMFLAILGILIYVSFRFEWRFAVASVMALIHDVTIAMGAVVLFGIEVNLDT 190 Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 +AA+LT++GYS+ND ++V+DR+R+ ++ +ID+S+ +TL R+ TS+ F Sbjct: 191 LAALLTILGYSLNDTIIVFDRIREGIRTI-KKPDLASIIDESVTQTLSRTTLTSLTTFFV 249 Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824 V + ++GG +I F + GIVV SSIF+A+PIL+++ Sbjct: 250 VFTLWMFGGEIIHGFGFTLLVGIVVGTYSSIFVASPILMWLG 291 >gi|148652695|ref|YP_001279788.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Psychrobacter sp. PRwf-1] gi|148571779|gb|ABQ93838.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Psychrobacter sp. PRwf-1] Length = 1076 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 75/692 (10%), Positives = 191/692 (27%), Gaps = 51/692 (7%) Query: 3 NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62 + ++ ++ +G++ + ++++P P + + Sbjct: 8 RPIFAWVIAILVMLLGVISVI-----NLPIEQYPRIAPPT-------------IKVSATY 49 Query: 63 DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117 ++ + +K + S +TL+F + + +V Sbjct: 50 PGANAQTVEDSVVQIIEQRMKGLDGLMYMSSSSSSTGSGSVTLTFENGTDPDTAQVQVQN 109 Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177 LQ S L ++ + +++ + + + + +DQ+ Sbjct: 110 KLQAAMSSLPETVQRQGVNVNKSSSSFLMVQAFVSEDGSMDRSDIADYVASNVVDQLSRV 169 Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237 E + DP+RLR + + N G Sbjct: 170 EGVGDINLFGS-SYAMRVWLDPARLRSYNLVPSDVVNAIRAQNAQVSAGQLGQAPADTDK 228 Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG