RPSBLAST alignment for GI: 254780925 and conserved domain: COG0342
>gnl|CDD|30690 COG0342, SecD, Preprotein translocase subunit SecD [Intracellular trafficking and secretion]. Length = 506
Score = 415 bits (1067), Expect = e-116
Identities = 217/532 (40%), Positives = 323/532 (60%), Gaps = 34/532 (6%)
Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
MR + W L +++ IG+L AL + + + N + LGLDLRGG H++LEV
Sbjct: 2 MRFSRWKKQLLALVVLIGILFAL--------NLSWLAKLKVNPMKLGLDLRGGVHILLEV 53
Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
D + L+ +D+LRS L+KEG+ +R N IT+ D+ + + L +
Sbjct: 54 DMPTALKKRLEQLADDLRSRLRKEGVSYSGVRVEGNGITVPLRDAAELDKARKLLRLLHR 113
Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
GV + + L++ +D++ A++Q++ I+R R++++G++E
Sbjct: 114 GV-------------------VLFLALTEAELDEIRKDAVQQNITILRNRVNELGVAEPV 154
Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-------VRFL 233
IQR G+ RI+++LPG QD +R + LLG TA + F V + G V L
Sbjct: 155 IQRQGADRIVVELPGVQDTARAKDLLGKTATLEFRLVDDSVKLADAADGLAPAGSEVLKL 214
Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
L++ +V ++G H+ AT FD + ++PVV+ S D GAR F + T+ N+GK
Sbjct: 215 DREGNRPVLLKKRVILTGDHITDATVGFDQRGNQPVVNFSLDSEGARIFADFTKANVGKR 274
Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
+A+VLDG+V++APVIN+AI G QI+GNFT E A LA +LR+G+LP L IVEER VG
Sbjct: 275 MAIVLDGQVISAPVINEAITGGSGQITGNFTAEEARDLALLLRSGALPAPLEIVEERTVG 334
Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
LG+DSI G A + GL L+ +FM++ Y G++A ++ LN +L LA+LSLLGATLT
Sbjct: 335 PTLGADSIKAGLIAGLIGLALVAVFMLLYYRLAGVIAAIALGLNGVLILAVLSLLGATLT 394
Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
LP IAGI+L IG+AVD+N+L+ ERIREE R +SV ++D GF RA+STI DSN T LIA
Sbjct: 395 LPGIAGIILTIGMAVDANVLIFERIREELRNGKSVLSAIDAGFKRAFSTILDSNATTLIA 454
Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
+LF G G V+GFA+T+ L IL SMFTAI + R ++ ++ +++K + I
Sbjct: 455 AAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLLNLLVGRRRLKKLSI 506