RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str. psy62] (833 letters) >gnl|CDD|30690 COG0342, SecD, Preprotein translocase subunit SecD [Intracellular trafficking and secretion]. Length = 506 Score = 415 bits (1067), Expect = e-116 Identities = 217/532 (40%), Positives = 323/532 (60%), Gaps = 34/532 (6%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MR + W L +++ IG+L AL + + + N + LGLDLRGG H++LEV Sbjct: 2 MRFSRWKKQLLALVVLIGILFAL--------NLSWLAKLKVNPMKLGLDLRGGVHILLEV 53 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 D + L+ +D+LRS L+KEG+ +R N IT+ D+ + + L + Sbjct: 54 DMPTALKKRLEQLADDLRSRLRKEGVSYSGVRVEGNGITVPLRDAAELDKARKLLRLLHR 113 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 GV + + L++ +D++ A++Q++ I+R R++++G++E Sbjct: 114 GV-------------------VLFLALTEAELDEIRKDAVQQNITILRNRVNELGVAEPV 154 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-------VRFL 233 IQR G+ RI+++LPG QD +R + LLG TA + F V + G V L Sbjct: 155 IQRQGADRIVVELPGVQDTARAKDLLGKTATLEFRLVDDSVKLADAADGLAPAGSEVLKL 214 Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 L++ +V ++G H+ AT FD + ++PVV+ S D GAR F + T+ N+GK Sbjct: 215 DREGNRPVLLKKRVILTGDHITDATVGFDQRGNQPVVNFSLDSEGARIFADFTKANVGKR 274 Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 +A+VLDG+V++APVIN+AI G QI+GNFT E A LA +LR+G+LP L IVEER VG Sbjct: 275 MAIVLDGQVISAPVINEAITGGSGQITGNFTAEEARDLALLLRSGALPAPLEIVEERTVG 334 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 LG+DSI G A + GL L+ +FM++ Y G++A ++ LN +L LA+LSLLGATLT Sbjct: 335 PTLGADSIKAGLIAGLIGLALVAVFMLLYYRLAGVIAAIALGLNGVLILAVLSLLGATLT 394 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 LP IAGI+L IG+AVD+N+L+ ERIREE R +SV ++D GF RA+STI DSN T LIA Sbjct: 395 LPGIAGIILTIGMAVDANVLIFERIREELRNGKSVLSAIDAGFKRAFSTILDSNATTLIA 454 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525 +LF G G V+GFA+T+ L IL SMFTAI + R ++ ++ +++K + I Sbjct: 455 AAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLLNLLVGRRRLKKLSI 506 Score = 70.0 bits (171), Expect = 2e-12 Identities = 37/205 (18%), Positives = 86/205 (41%), Gaps = 5/205 (2%) Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686 + + R L ++ + PL I VGP + + I+ G++ +I + +++ + Sbjct: 304 FTAEEARDLALLLRSGALPAPL-EIVEERTVGPTLGADSIKAGLIAGLIGLALVAVFMLL 362 Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746 ++ + A L L+ L +L G L +A ++ IG +V+ V++++R+R+ Sbjct: 363 YYRL-AGVIAAIALGLNGVLILAVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERIRE 421 Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806 ++ S ID + ++ I+ + G + FA+ + GI+ Sbjct: 422 ELRN---GKSVLSAIDAGFKRAFSTILDSNATTLIAAAILFALGTGPVKGFAVTLILGIL 478 Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831 + ++I + +L + R Sbjct: 479 TSMFTAIPVTRLLLNLLVGRRRLKK 503 >gnl|CDD|30689 COG0341, SecF, Preprotein translocase subunit SecF [Intracellular trafficking and secretion]. Length = 305 Score = 261 bits (668), Expect = 6e-70 Identities = 123/299 (41%), Positives = 189/299 (63%), Gaps = 4/299 (1%) Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591 L P I FM+ R +GIS+ + SI + T GLN GIDF GG + + + DL Sbjct: 2 KLYPGKGDIDFMKLRKLALGISLALLVISILFIGTRGLNLGIDFTGGTVIELQYEQTADL 61 Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651 VRS LE L IGD+ Q+F + L+R+ Q G +V E +K+ ++ P + Sbjct: 62 DQVRSRLEKLGIGDVQVQSFGSSGDVLIRVPTQEGGEDLGNKVKEKLKE---DLDPSGEV 118 Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711 ++ E VGP + +EL R+G++ ++++ + +LIY++ RF+W FAL AI L+ D+ TLGFF Sbjct: 119 RSVEFVGPTVGKELARQGLLALLLALVGILIYVFFRFEWRFALAAILALLHDVIITLGFF 178 Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771 +LFGIEFNL +AA+LT+IGYSVND +VV+DR+R+N++ Y + R++I+ SIN+TL R Sbjct: 179 SLFGIEFNLATIAALLTIIGYSVNDTIVVFDRIRENLRKY-RRETLREIINTSINQTLTR 237 Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 ++ TS+ + V+ + ++GG + FA+ + GI+ SSIFIAAP+LL + R K Sbjct: 238 TINTSVTTLLVVVALLLFGGGSLKDFALALLVGIIAGTYSSIFIAAPLLLLLGKRREKK 296 Score = 83.3 bits (206), Expect = 2e-16 Identities = 47/174 (27%), Positives = 97/174 (55%), Gaps = 4/174 (2%) Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGA 410 VG +G + +G A++ LV I++++ + ++ L A ++ +VI+TL SL G Sbjct: 124 VGPTVGKELARQGLLALLLALVGILIYVFFRFEWRFALAAILALLHDVIITLGFFSLFGI 183 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNI 468 L +IA ++ IG +V+ I+V +RIRE RK + ++ ++ ++ + ++++ Sbjct: 184 EFNLATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSINQTLTRTINTSV 243 Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMK 521 T L+ V L FGGG+++ FA+ + + I+ +++I I + ++ R +K K Sbjct: 244 TTLLVVVALLLFGGGSLKDFALALLVGIIAGTYSSIFIAAPLLLLLGKRREKKK 297 >gnl|CDD|111266 pfam02355, SecD_SecF, Protein export membrane protein. This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. Length = 189 Score = 187 bits (477), Expect = 1e-47 Identities = 73/189 (38%), Positives = 128/189 (67%), Gaps = 1/189 (0%) Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697 V+ + E+ P + I + E VGP + +EL + ++ ++ + + +L+Y+ +RF+W FALGA+ Sbjct: 2 VEALLKEVGPDAEIISVEFVGPTVGKELREQAVIALLGALLGILVYVSLRFEWRFALGAV 61 Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757 L D+ T+G +LFGIE +L +AA+LT+IGYSVND VVV+DR+R+N++ T + + Sbjct: 62 IALAHDVIITVGVMSLFGIEIDLATIAALLTIIGYSVNDTVVVFDRIRENLRKKTRA-TV 120 Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817 ++++ SIN+TL R++ TS+ ++++ + ++GG + FA+ + G++ SSIFIAA Sbjct: 121 NEIMNLSINQTLTRTIMTSLTTLLALVSLFIFGGDSLKDFALALLVGLIAGTYSSIFIAA 180 Query: 818 PILLFIYDW 826 PILL + Sbjct: 181 PILLLLGKK 189 Score = 74.9 bits (185), Expect = 9e-14 Identities = 46/170 (27%), Positives = 94/170 (55%), Gaps = 15/170 (8%) Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGA 410 VG +G + + A++ L+ I++++ + + ++ L A ++ +VI+T+ ++SL G Sbjct: 21 VGPTVGKELREQAVIALLGALLGILVYVSLRFEWRFALGAVIALAHDVIITVGVMSLFGI 80 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRK------NQSVFCSLDMGFSRAYSTIF 464 + L +IA ++ IG +V+ ++V +RIRE RK N+ + S++ +R T Sbjct: 81 EIDLATIAALLTIIGYSVNDTVVVFDRIRENLRKKTRATVNEIMNLSINQTLTRTIMTS- 139 Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILI----SMFTAISIVRAM 510 +T L+A V LF FGG +++ FA+ + + ++ S+F A I+ + Sbjct: 140 ---LTTLLALVSLFIFGGDSLKDFALALLVGLIAGTYSSIFIAAPILLLL 186 >gnl|CDD|31183 COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]. Length = 1009 Score = 64.9 bits (158), Expect = 9e-11 Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 15/220 (6%) Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKW--GLVADFSIFLNVILTLALLSLLGATLTLP 415 SI + + +VL+VL M + G L+ ++ ++++ T A++ G +L Sbjct: 325 KASIEEVIKTLFEAIVLVVLVMYLFLGNLRATLIPALAVPVSLLGTFAVMYAFGFSLNTL 384 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 ++ +VL IGL VD I+V E I E + + + + + + + + Sbjct: 385 TLFALVLAIGLLVDDAIVVVENI-ERHMRGLPPREAAEKAMGEIGGAVIAITLVLIAVFL 443 Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 + F GG R FAIT+ +++L+S+ A+++ A+ +++ +RFF Sbjct: 444 PMAFMGGSTGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPKGFFGWFNRFF 503 Query: 533 LIPDCIAIQFMRA------RFWGVGISILFSICSICLLFT 566 D + ++ R R V + L + LLF Sbjct: 504 ---DRLEDRYQRGLRWVLRRRALVLLLYLVLLGGSVLLFL 540 Score = 48.7 bits (116), Expect = 7e-06 Identities = 34/201 (16%), Positives = 84/201 (41%), Gaps = 7/201 (3%) Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678 V + V+ + ++K E+ S + +E + ++ ++ + Sbjct: 801 VTISGNLAPGVSSGDAMAAMEKLAAELPLPSGYTYEWSGESEQEKEAGGQALLLFALALL 860 Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737 + + + +++ + + T+ L + L L G+ ++ A ++TLIG + Sbjct: 861 VVFLVLAAQYESFSIPFIVMLTVPLGLLGALLALLLTGLPLDVYAQIGLITLIGLVAKNA 920 Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794 +++ + + +S R+ I ++ L + TS+AA + VLP+A+ G Sbjct: 921 ILIVEFANELRAEG---LSLREAILEAARLRLRPILMTSLAAILGVLPLALSTGAGAESR 977 Query: 795 GSFAIPMAFGIVVAASSSIFI 815 I + G++VA ++F+ Sbjct: 978 QPLGIAVVGGLLVATVLTLFV 998 Score = 48.3 bits (115), Expect = 9e-06 Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 28/242 (11%) Query: 593 VVRSNLESLQIGDI-----------SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641 +V+SN +++ D+ S +G+ + ++ PG + + VK K Sbjct: 243 IVKSNGAVVRLKDVARVELGAEDYTSIARLNGKPAVGLAVKKAPGANALD--TAKAVKAK 300 Query: 642 ITEI-------VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694 + E+ V ++ +T E+I+ +++ + M +++ L Sbjct: 301 LAELQANLPQGVDIAIPYDTTEFIKASIEEVIKTLFEAIVLVVLVMYLFLG---NLRATL 357 Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 + + + T FG N + A++ IG V+D +VV + + ++M+ Sbjct: 358 IPALAVPVSLLGTFAVMYAFGFSLNTLTLFALVLAIGLLVDDAIVVVENIERHMRGLPP- 416 Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814 R+ +K++ E G + ++ LPMA GG G A I VA S+ Sbjct: 417 ---REAAEKAMGEIGGAVIAITLVLIAVFLPMAFMGG-STGELFRQFAITIAVAMLLSLL 472 Query: 815 IA 816 +A Sbjct: 473 VA 474 Score = 44.8 bits (106), Expect = 8e-05 Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 7/141 (4%) Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL--ALLSLL--GATLTLPSIAGIVL 422 L+++ L + Y + F + L V L L ALL+LL G L + + G++ Sbjct: 854 LFALALLVVFLVLAAQYESF--SIPFIVMLTVPLGLLGALLALLLTGLPLDVYAQIGLIT 911 Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482 IGL + IL+ E E + S+ ++ I +++ A++ + L Sbjct: 912 LIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILMTSLAAILGVLPL-ALST 970 Query: 483 GAVRGFAITMGLSILISMFTA 503 GA +G++++ + A Sbjct: 971 GAGAESRQPLGIAVVGGLLVA 991 >gnl|CDD|31236 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]. Length = 727 Score = 61.8 bits (150), Expect = 8e-10 Identities = 77/441 (17%), Positives = 167/441 (37%), Gaps = 31/441 (7%) Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 A+ L++IVL+ + + L+ + ++V+ TL + LLG LT+ + A L IG+ Sbjct: 203 ALAVILMVIVLYYVFRSVRRALLPLIIVLVSVLWTLGAMGLLGIPLTITTSAVPPLLIGI 262 Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486 +D + + R EE RK ++V ++ + + +T + L A++ Sbjct: 263 GIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSIPAIK 322 Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546 F I + + I+++ ++++++ A++I I + +K + + + R Sbjct: 323 EFGILLSIGIILAFLSSLTVLPALLILIPKGRKKREEKKDSKKG-----------KLEKR 371 Query: 547 FWGVGISIL---FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 + I ++ + L+ YG K I+ + P DL L+ ++ Sbjct: 372 LSKIAKIIARHPVTVLVVALIIVGVSLYG-ASKVKIETDIEKYLPQDLP-ALKALDFIE- 428 Query: 604 GDISFQNFDGEKNFLVRLQYQPG-DSVAQTRVLEMVKK-KITEIVPLSTIQNTEIVGPKI 661 + F G + L+ + D + E+ ++ + E S ++V Sbjct: 429 -----KEFGGSDPITIVLEAEDVRDPEVLRWMDELEEELEKGEEHVFSASSIVDLVKQVN 483 Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721 + K + +I+ + I K Y + + L + T G G E Sbjct: 484 GGIIPDKSKIQIILEELPESI-----KKRYISGDQLNLLGYSLGDTQGELEDVGREILRD 538 Query: 722 AVAAVL-TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG-RSVYTSMAA 779 + T + V + V+Y M + + + +I + RS ++ Sbjct: 539 IEKENIPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPLKAIIP 598 Query: 780 FISVLPMAVWGGSVIGSFAIP 800 I + + W ++G IP Sbjct: 599 LIPIAIVVGWNFGLMGLLGIP 619 Score = 56.0 bits (135), Expect = 4e-08 Identities = 35/154 (22%), Positives = 72/154 (46%), Gaps = 3/154 (1%) Query: 368 IVAGLVLIVLFMIVLYGKW--GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 V G++L+ +++++ ++ I + V L+ LLG LT + + +G Sbjct: 574 TVLGIILVFALLLIIFRSPLKAIIPLIPIAIVVGWNFGLMGLLGIPLTPATATLGAIILG 633 Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485 + VD +I + ER REE RK +++ R I S +T I + L F + Sbjct: 634 IGVDYSIHITERYREE-RKKGGPKEAIETTVERTGKAILASALTTAIGFLALIFSPFPII 692 Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519 F + + IL+S+ ++ ++ A+++ + +K Sbjct: 693 SNFGLLTVIGILLSLLASLVLLPALLVLLDGRRK 726 Score = 46.0 bits (109), Expect = 5e-05 Identities = 45/218 (20%), Positives = 95/218 (43%), Gaps = 22/218 (10%) Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP----KISRELIRKGIVGVIISAIAMLI 682 + + + E +++ I S ++ P +I RE+ + +V + ++ I M+I Sbjct: 152 NDAQKEEIYEEIERIIEIAKFPSGVKLYLTGDPAIRYQILREIQKDMVVLLALAVILMVI 211 Query: 683 YIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741 ++ F+ AL + +++ + TLG L GI +T A LIG ++ V + Sbjct: 212 VLYYVFRSVRRALLPLIIVLVSVLWTLGAMGLLGIPLTITTSAVPPLLIGIGIDYGVHFH 271 Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGR-------SVYTSMAAFISVLPMAVWGGSVI 794 +R + +++++ E + + T+ A F+S+L ++ I Sbjct: 272 NRYEE-------ERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSI---PAI 321 Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832 F I ++ GI++A SS+ + +L+ I R K Sbjct: 322 KEFGILLSIGIILAFLSSLTVLPALLILIPKGRKKREE 359 Score = 38.7 bits (90), Expect = 0.006 Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 17/166 (10%) Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 + I + L+ I R A+ + + + + G L GI + Sbjct: 573 STVLGIILVFALLLIIFR-SPLKAIIPLIPIAIVVGWNFGLMGLLGIPLTPATATLGAII 631 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL---GRSVYTSMAAFISVLPM 786 +G V+ + + +R R+ K + ++I T+ G+++ S A + + Sbjct: 632 LGIGVDYSIHITERYREERK--------KGGPKEAIETTVERTGKAILAS--ALTTAIGF 681 Query: 787 AVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 S +I +F + GI+++ +S+ + +L+ + R + Sbjct: 682 LALIFSPFPIISNFGLLTVIGILLSLLASLVLLPALLVLLDGRRKR 727 >gnl|CDD|32544 COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]. Length = 937 Score = 60.4 bits (146), Expect = 2e-09 Identities = 47/240 (19%), Positives = 94/240 (39%), Gaps = 15/240 (6%) Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP- 341 V +D + PL L Q +G + E+ + +++R P Sbjct: 105 VNVVQDFVSDPLTAELAQSKDGKAAYAQLTLAGY--LGVTQANESVEAVRSIVRQLPAPD 162 Query: 342 -IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400 + + ADL + LVLI++ ++++Y ++ F + V L Sbjct: 163 GLTAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYR--SVITAFLPLITVGL 220 Query: 401 TLALLSLLGATLTLPSIAGI---------VLGIGLAVDSNILVNERIREENRKNQSVFCS 451 +L + + A L G+ LGIG D + + R REE R+ Q + Sbjct: 221 SLLVAQGIVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAA 280 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 + + A T+ S +T IA + L F ++ I + + +++ A++++ A++ Sbjct: 281 VGTAYRTAGKTVAFSGLTVAIALLGLSFARLPFLKTLGIAAAIGVAVAVLAALTLLPALL 340 Score = 28.5 bits (63), Expect = 8.5 Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 14/178 (7%) Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401 I L + I L+ I+L +++ V ++ L+ Sbjct: 739 IYLGGTAAWWLDIRDWLTHDLPLVVIITLCLIFIILLILLRSVVAPAVLVGTVLLSYGAA 798 Query: 402 LALLSLLGATL-------TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454 L L L+ + +P+++ +VL + + D NIL+ R+REE L Sbjct: 799 LGLSVLIWQHILGIELHWLVPALSFVVL-LAVGSDYNILLISRLREEIGA------GLRT 851 Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 G RA A + + +G +I + + +VR M+ Sbjct: 852 GIIRAMRGTGGVITAAGLIFAATMASLVFSDLRVLGQIGTTIGLGLLLDTLVVRPFMV 909 >gnl|CDD|33492 COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]. Length = 1027 Score = 56.8 bits (137), Expect = 2e-08 Identities = 40/168 (23%), Positives = 79/168 (47%), Gaps = 9/168 (5%) Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431 LV+IVL + + + L+ S+ L++++ +++ G + L S+ G+ + IG VD+ Sbjct: 346 LVIIVLALFLGNFRSALIVIISLPLSLLIAFIVMNFFGISANLMSLGGLAIAIGAMVDAA 405 Query: 432 ILVNE----RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487 I+V E R+ E N + F + +F + + + +F G + Sbjct: 406 IVVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGLLIITVVFLPIFTLTGVEGKL 465 Query: 488 F---AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 F A T ++L ++ +I+ + A+M ++IR + NPL RF Sbjct: 466 FAPLAFTKTYALLAALLLSITFIPALMAYLIR--GILPESENPLMRFL 511 Score = 41.0 bits (96), Expect = 0.001 Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 20/196 (10%) Query: 633 RVLEMVKKKITEIVP--------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684 V+ VK+K+ E+ ++T +E++ I + + I G ++ I + +++ Sbjct: 297 EVIAAVKEKLEELKKSLPEGVKIVTTYDRSELIDKAI-DTVSKTLIEGSVLVIIVLALFL 355 Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---- 740 + AL I +L L + FGI NL ++ + IG V+ +VV Sbjct: 356 G---NFRSALIVIISLPLSLLIAFIVMNFFGISANLMSLGGLAIAIGAMVDAAIVVVENA 412 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 + R+ +N T + F + D S E + + + LP+ G V G P Sbjct: 413 HRRLEENQH--TNATRFHVIYDASK-EVGRPVFFGLLIITVVFLPIFTLTG-VEGKLFAP 468 Query: 801 MAFGIVVAASSSIFIA 816 +AF A +++ ++ Sbjct: 469 LAFTKTYALLAALLLS 484 Score = 36.7 bits (85), Expect = 0.025 Identities = 31/163 (19%), Positives = 68/163 (41%), Gaps = 7/163 (4%) Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729 +V V + I +L+Y + AL + L + + AL G ++ A + L Sbjct: 866 VVPVSLLLIFVLLYFAFK-SVGEALLIFSNLPFALIGGVIALALRGFNLSVAAAVGFIAL 924 Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788 G +V + VV+ +R+ +S ++ I + E + + T++ + +LP+ Sbjct: 925 FGVAVLNGVVMVSYIRQ---ALQQGMSLKEAIMEGAVERVRPKLMTALVILLGLLPILWA 981 Query: 789 --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829 G V+ AI + G+V + + ++ + + R + Sbjct: 982 TGAGSEVMRPLAIVVIGGLVTSTALTLLVLPALYALFGKRRLR 1024 Score = 28.3 bits (63), Expect = 9.1 Identities = 18/87 (20%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL----ALLSLLGATLTLPSIAGIVL 422 +V + L+++F+++ + + IF N+ L L+L G L++ + G + Sbjct: 864 KVVVPVSLLLIFVLLYFAFKSVGEALLIFSNLPFALIGGVIALALRGFNLSVAAAVGFIA 923 Query: 423 GIGLAVDSNILVNERIREENRKNQSVF 449 G+AV + +++ IR+ ++ S+ Sbjct: 924 LFGVAVLNGVVMVSYIRQALQQGMSLK 950 >gnl|CDD|144459 pfam00873, ACR_tran, AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer. Length = 1021 Score = 53.8 bits (130), Expect = 2e-07 Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 20/156 (12%) Query: 368 IVAGLVLIVLFMIVLYGKW--GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425 ++ +VL++L M + + L+ ++ L+++ T A++ G ++ ++ G+VL IG Sbjct: 337 LLEAIVLVILVMFLFLQNFRATLIPAIAVPLSLLGTFAVMKAFGFSINTLTLGGLVLAIG 396 Query: 426 LAVDSNILVNE----RIREENRKNQSVFCSLDMGFSRAYSTIFDSNI-TALIATVV---L 477 L VD I+V E + EE K ++ I + + AL+ + V + Sbjct: 397 LVVDDAIVVVENIERGLAEEGLKPLEA-------AYKSMGEIGGALVAIALVLSAVFLPI 449 Query: 478 FFFGG--GAV-RGFAITMGLSILISMFTAISIVRAM 510 F GG G + R FAIT+ L+IL+S+ A+++ A+ Sbjct: 450 AFLGGVTGRIFRQFAITIVLAILLSVLVALTLTPAL 485 Score = 43.8 bits (104), Expect = 2e-04 Identities = 57/213 (26%), Positives = 90/213 (42%), Gaps = 15/213 (7%) Query: 611 FDGEKNFLVRLQYQPGDSVAQTR-VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669 F+G+ + +Q PG A + V+ K+ E+ P + Q EIV P + +R Sbjct: 274 FNGKPAVGLGVQKLPG---ANAIETADAVRAKLAELKP-TFPQGVEIVVPYDTTPFVRAS 329 Query: 670 IVGV---IISAIAMLIYIWIRFKWYFALGAITTLI--LDITKTLGFFALFGIEFN-LTAV 723 I V ++ AI ++I + F F I + L + T FG N LT Sbjct: 330 IEEVVKTLLEAIVLVILVMFLFLQNFRATLIPAIAVPLSLLGTFAVMKAFGFSINTLTLG 389 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 VL IG V+D +VV + + + + + + KS+ E G V ++ Sbjct: 390 GLVLA-IGLVVDDAIVVVENIERGLA--EEGLKPLEAAYKSMGEIGGALVAIALVLSAVF 446 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 LP+A GG V G A IV+A S+ +A Sbjct: 447 LPIAFLGG-VTGRIFRQFAITIVLAILLSVLVA 478 Score = 41.5 bits (98), Expect = 0.001 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 6/82 (7%) Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL--ALLSLL--GATLTLPSIAGIVL 422 I L+L+ L + LY W SI L V L L ALL+L G ++ + G++ Sbjct: 867 LIALALLLVFLVLAALYESW--SDPLSIMLTVPLALVGALLALWLRGLPNSVYAQVGLIT 924 Query: 423 GIGLAVDSNILVNERIREENRK 444 IGLAV + IL+ E E + Sbjct: 925 LIGLAVKNAILMVEFANELREQ 946 >gnl|CDD|146013 pfam03176, MMPL, MMPL family. Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport. Length = 332 Score = 48.1 bits (115), Expect = 1e-05 Identities = 36/232 (15%), Positives = 80/232 (34%), Gaps = 19/232 (8%) Query: 291 GKPLAVVLDGRVLTAPV---INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347 L V DG+ V + ++ + A +K + Sbjct: 75 TAALFVSPDGKAAYVVVTLEGDPGTTEADESVAA---VRDA---VEQAPPPE-GLKAYLT 127 Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK---WGLV---ADFSIF--LNVI 399 ADL LV+I + ++++Y L S+ ++ Sbjct: 128 GPAATVADLRDAGDRDLGLIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAAQGLV 187 Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459 LA + +G + ++ ++L I + D + + R REE R + ++ Sbjct: 188 AILAHILGIGLSTFALNLLVVLL-IAVGTDYALFLVSRYREELRAGEDREEAVIRAVRGT 246 Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 + + +T IA + L F T+ + +L+ + A++++ A++ Sbjct: 247 GKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTLLPALL 298 >gnl|CDD|37144 KOG1933, KOG1933, KOG1933, Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]. Length = 1201 Score = 38.0 bits (88), Expect = 0.010 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 7/150 (4%) Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN---ILVNER 437 VL G G++ + L+V+ ++ S LG T TL I I + LAV + ILV+ Sbjct: 582 VLLGISGVLI---VLLSVVCSVGFFSYLGITSTLIIIEVIPFLV-LAVGVDNIFILVHTY 637 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 R+ K++ + + +I S+++ + F AVR FA+ GL++L Sbjct: 638 QRDGRSKSEPLEQRIGSVLGEVGPSILLSSLSENFCFFLGAFVDMPAVRVFALYAGLAVL 697 Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINP 527 + I+ A+++ + + IDI Sbjct: 698 LDFLLQITAFVALIVLDAKRRLDNRIDIFC 727 >gnl|CDD|37145 KOG1934, KOG1934, KOG1934, Predicted membrane protein (patched superfamily) [General function prediction only]. Length = 868 Score = 37.9 bits (88), Expect = 0.011 Identities = 31/188 (16%), Positives = 70/188 (37%), Gaps = 15/188 (7%) Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417 + C + + I + V W ++ SI + V LSL G L S+ Sbjct: 681 QSIVIALICMFLVCFLFIPNPLCVF---WITLSIVSINIGVF---GFLSLWGVDLDPISM 734 Query: 418 AGIVLGIGLAVDSNILVN---ERIREENRKNQSVFCSL-DMGFSRAYSTIFDSNITALIA 473 I++ IG +VD + V + R+ + + + +L +G+ + + ++ ++ Sbjct: 735 ITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWP-----VLQAGLSTILG 789 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + L F V+ F T+ L + + + + + ++ KK + Sbjct: 790 VLPLLFVPSYMVQVFFKTVVLVVTLGLLHGLVFLPVILSLFPPIKKKCKRKKRAAASPRS 849 Query: 534 IPDCIAIQ 541 + I+ Sbjct: 850 SSEESEIK 857 Score = 32.9 bits (75), Expect = 0.37 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI----WIRFKWYFALGAITTLILDI 704 S + E+V + L+ VG I I ++ W+R K A+ + + ++ I Sbjct: 240 SQTLDEELV--RNGLTLVPFLSVGFAILVIFSILTSFMIDWVRSKPILAILGVLSPVMAI 297 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 G G FN ++G V+D Sbjct: 298 ITAFGLLFWCGFPFNSIVCVMPFLVLGIGVDD 329 Score = 31.8 bits (72), Expect = 0.87 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%) Query: 368 IVAGLVLIVLFMIV--LYGKW-------GLVADFSIFLNVILTLALLSLLGATLTLPSIA 418 + G ++V+F I+ W ++ S + +I LL G SI Sbjct: 258 LSVGFAILVIFSILTSFMIDWVRSKPILAILGVLSPVMAIITAFGLLFWCG--FPFNSIV 315 Query: 419 GI----VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474 + VLGIG+ D+ +++ R K SV + + A +I +++T +++ Sbjct: 316 CVMPFLVLGIGVD-DAFLMLAAWRRTS--KKLSVEERMAETLAEAGPSITITSLTNVLSF 372 Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518 + AV+ F + ++IL ++ A+M+ R + Sbjct: 373 GIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRRE 416 >gnl|CDD|111366 pfam02460, Patched, Patched family. The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog. This protein associates with the smoothened protein to transduce hedgehog signals. Length = 801 Score = 32.7 bits (75), Expect = 0.46 Identities = 32/169 (18%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 + D I+ C + + I V V +I I LSL G Sbjct: 644 TILPDTIQSIIWTLICMAIVCFLFIPNPNCVF------VITLAIASICIGVFGFLSLWGV 697 Query: 411 TLTLPSIAGIVLGIGLAVD--SNILVNERIREENRKNQSVFCSLD-MGFSRAYSTIFDSN 467 L S+ I++ IG +VD ++I + + ++ V +L+ +G+ +F + Sbjct: 698 DLDPISMITIIMSIGFSVDFSAHIAYHFYRSRGSTPDERVADALEALGWP-----VFQAA 752 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 ++ ++ +VL F V F T+ L ++I + + + ++ Sbjct: 753 LSTILCVLVLLFVPSYMVVVFFKTVVLVVVIGLLHGLIFLPIILSLFDT 801 Score = 28.8 bits (65), Expect = 6.0 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 16/75 (21%) Query: 661 ISRELIRKGI-------VGVIISAIAMLIYI---------WIRFKWYFALGAITTLILDI 704 ++ EL+R I VG I +I W+R K A+ T ++ Sbjct: 205 LADELVRNAITLIPFFVVGFAILLTFSIITSVRLSSGMIDWVRSKPILAILGCLTPLMAT 264 Query: 705 TKTLGFFALFGIEFN 719 G FG FN Sbjct: 265 VSAFGLLFWFGFPFN 279 >gnl|CDD|146370 pfam03699, UPF0182, Uncharacterized protein family (UPF0182). This family contains uncharacterized integral membrane proteins. Length = 771 Score = 31.4 bits (72), Expect = 1.0 Identities = 18/123 (14%), Positives = 46/123 (37%), Gaps = 11/123 (8%) Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721 S+ LI IV +++ I++L ++ + W+ LG ++ + +G F L + Sbjct: 3 SKVLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFL----- 57 Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781 + + + ++ Y + L +S+ R + ++ + Sbjct: 58 -IFFLFLFLNL-----LLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVL 111 Query: 782 SVL 784 +L Sbjct: 112 GLL 114 >gnl|CDD|73247 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.. Length = 382 Score = 30.5 bits (69), Expect = 2.1 Identities = 12/53 (22%), Positives = 25/53 (47%) Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 + + + IAT +L G G R + M ++ +S F + + A+M+ + Sbjct: 62 LTRTGLAKRIATKLLKRAGKGERRLLLLLMLVTAFLSAFMSNTATVAIMLPVA 114 >gnl|CDD|37146 KOG1935, KOG1935, KOG1935, Membrane protein Patched/PTCH [Signal transduction mechanisms]. Length = 1143 Score = 29.9 bits (67), Expect = 2.7 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 7/110 (6%) Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGP--KISRELIRKGIVGVIISAIAMLIYIW--IRF 688 RV + + + +I P S+ +I+ + S I G + ++ A + W ++ Sbjct: 380 RVYQHLANERRQIHPFSSTSLDDILEEFSQFSAISIVIGYLLMVAYACLTQLRWWDAVQS 439 Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFN--LTAVAAVLTLIGYSVND 736 + L + + LG L GIEFN T V L L G V+D Sbjct: 440 QGSVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLAL-GLGVDD 488 >gnl|CDD|37555 KOG2344, KOG2344, KOG2344, Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]. Length = 623 Score = 29.6 bits (66), Expect = 3.4 Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 11/150 (7%) Query: 109 ENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS-----QNNIDQVISHAIEQS 163 E + + FL +N + K + + +E LS Q + ++S QS Sbjct: 50 EQAEEIIEKFLTALNLR---SSSKIISFLESREEAKNFLSAVNTLQETLQFLVSQNGLQS 106 Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223 ++++ + D + + +IL E DP RL L ++ + N+ Sbjct: 107 SKLLKAQADSLLQIAMSRLEKEFRQILENNREELDPERLSVRLRSSLNSKDEEASLNSDS 166 Query: 224 KGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253 K + +S G+ + D + Sbjct: 167 K---YSALSDEESFGDDEIEPDLFPPDVMT 193 >gnl|CDD|72856 cd04716, BAH_plantDCM_I, BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.. Length = 122 Score = 29.5 bits (66), Expect = 3.9 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 590 DLSVVRSNLESLQIGDIS--FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647 D V E I I+ F+ DG+ F + Y+ D+V + + KK+ V Sbjct: 9 DAYVQGGEGEEPFICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATNHDKKR----VF 64 Query: 648 LSTIQNTEIVGPKISR 663 S I+N + IS+ Sbjct: 65 YSEIKNDNPLDCLISK 80 >gnl|CDD|147058 pfam04707, PRELI, PRELI-like family. This family includes a conserved region found in the PRELI protein and yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. This region is also found in a number of other eukaryotic proteins. Length = 157 Score = 29.2 bits (66), Expect = 5.4 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 5/37 (13%) Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776 V D ++ + L T +++F + S++E R YT Sbjct: 68 VVDPKKRTLTLETRNLTFSSRL--SVDE---RCTYTP 99 >gnl|CDD|164495 CHL00091, apcE, phycobillisome linker protein. Length = 877 Score = 28.6 bits (64), Expect = 6.6 Identities = 14/72 (19%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Query: 97 KITLSFADSRFKENIADKVTLFLQ-GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155 + LS DS+ + I+ K F++ G + + + + ++ +S++ Q+ + +V Sbjct: 652 ILRLSIIDSKSAKVISSKEARFIELGQAKES---RSSSSIQSRIQQGVSLLRDQSVVFKV 708 Query: 156 ISHAIEQSMEII 167 SH+ ++++E + Sbjct: 709 NSHSDKENLEQV 720 >gnl|CDD|111338 pfam02432, Fimbrial_K88, Fimbrial, major and minor subunit. Fimbriae (also know as pili) are polar filaments found on the bacterial surface, allowing colonisation of the host. This family consists of the minor and major fimbrial subunits. Length = 238 Score = 28.5 bits (64), Expect = 6.9 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%) Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811 T ISF+ S+ TS LP+ G+VIG+ + + V++ S Sbjct: 70 TPQISFKSYEGFSVT-----LSTTSPGTARVTLPVKGESGTVIGTLSFNLQAAGVLSTGS 124 >gnl|CDD|111273 pfam02364, Glucan_synthase, 1,3-beta-glucan synthase component. This family consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase EC:2.4.1.34 also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall. The reaction catalysed is:- UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP + {(1,3)-beta-D-glucosyl}(N+1). Length = 817 Score = 28.6 bits (64), Expect = 7.8 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%) Query: 478 FFFGG----GAVRGFAIT-MGLSILISMFTAISIVRAMMIFII 515 FGG RGFA + S L S F SI + + ++ Sbjct: 605 LSFGGARYIATGRGFATARLPFSTLYSRFAGPSIYKGARLGLM 647 >gnl|CDD|31488 COG1297, COG1297, Predicted membrane protein [Function unknown]. Length = 624 Score = 28.3 bits (63), Expect = 8.1 Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 16/171 (9%) Query: 365 TCAIVAG-LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423 T A AG L V+F++ G + F F + AL +LG T+P +++ Sbjct: 75 TQASAAGTLSAGVIFVLPGLLMLGYWSGFP-FWQTAIICALGGILGVLFTIPLRRAMIVE 133 Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF-----------DSNITALI 472 L + E ++ N++ + A + ++ S A Sbjct: 134 SKLPYPEGVAAAEVLKAGNQREGDASGIKLIALGGALAALYSLLASGLRVIASSLSAAFS 193 Query: 473 ATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520 F G G A+ G +GL I+M I I + + ++ Sbjct: 194 VGRAAFALGLGLSLALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLIVP 244 >gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341 Score = 28.4 bits (64), Expect = 8.6 Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802 SI E LG +V+T +A +S + + G IG AI +A Sbjct: 145 SIQEPLGNAVHTVLAGDVSGKSVLITGCGPIGLMAIAVA 183 >gnl|CDD|72941 cd02826, Piwi-like, Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.. Length = 393 Score = 28.4 bits (63), Expect = 8.6 Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRF-KENIADKVTLFLQG 121 V L+ L +K+ Q IQ K + +N+ KV L G Sbjct: 98 QLVIFILKEKKPPLHDEIKRLEAKSDIPSQVIQLKTAKKMRRLKQTLDNLLRKVNSKLGG 157 Query: 122 VNSKLNVDPKKN 133 +N L+ K Sbjct: 158 INYILDSPVKLF 169 >gnl|CDD|33602 COG3808, OVP1, Inorganic pyrophosphatase [Energy production and conversion]. Length = 703 Score = 28.3 bits (63), Expect = 8.8 Identities = 85/480 (17%), Positives = 171/480 (35%), Gaps = 93/480 (19%) Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 AD G++ + + AI G M L ++ +A I + ++L LLS L A Sbjct: 30 ADAGNERMKEIAAAIREGA------MAYLARQYKTIAVVGIVVAILLAWFLLSWLTA--- 80 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 I ++ + A ++ R R Q+ L A+ Sbjct: 81 ---IGFLLGAVLSAAAGFAGMHVSTRANVRTAQAASTGLGKALDVAFK------------ 125 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 GAV G ++ GL++L +S+ ++ ++ ++ I I+ L Sbjct: 126 --------SGAVMGLSVA-GLALL-----GLSLYYLVLTSVLGHEPNLRIVIDSLVGLGF 171 Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593 I++ F R G GI FT + G D G ++ G+ + P + + Sbjct: 172 GASLISL-FARV---GGGI------------FTKAADVGADLVGKVEAGIPEDDPRNPAT 215 Query: 594 VRSNLESLQIGDIS------FQNFDGE---KNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644 + N+ +GD + F+++ L + + +++ + + I Sbjct: 216 IADNVGD-NVGDCAGMAADLFESYVVTVVATMVLAAIFFLGTETIEAVILYPLA---ICA 271 Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 + +++I T V S ++ G+I + I ++ + + T + I Sbjct: 272 VGIITSIIGTFFVKLGKSGSIMGALYKGLIATGILSVVALAFVTSFLLGGTIGTVAGMSI 331 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL--ID 762 FF +IG V +VV Y TS ++R + I Sbjct: 332 GAINLFFC---------------GVIGLVVTALIVVITE-------YYTSTNYRPVNSIA 369 Query: 763 KSINETLGRSVYTSMAAFI--SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 ++ G ++ +A + + LP V +I ++ + +G +AA + A I+ Sbjct: 370 QASVTGHGTNIIQGLAVGLESTALPAIVIVIGIIITYQLAGLYGTAIAAVGMLSTAGMIV 429 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.326 0.141 0.405 Gapped Lambda K H 0.267 0.0714 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 9,895,157 Number of extensions: 565447 Number of successful extensions: 2819 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2778 Number of HSP's successfully gapped: 190 Length of query: 833 Length of database: 6,263,737 Length adjustment: 102 Effective length of query: 731 Effective length of database: 4,059,619 Effective search space: 2967581489 Effective search space used: 2967581489 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 62 (27.7 bits)