RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str. psy62] (833 letters) >gnl|CDD|183848 PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed. Length = 755 Score = 722 bits (1865), Expect = 0.0 Identities = 288/691 (41%), Positives = 426/691 (61%), Gaps = 28/691 (4%) Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218 A++ ++E++R RID +G+SE IQR G++RI ++LPG QDP R R+LLG+TAK++F V Sbjct: 60 ALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERARELLGSTAKLTFRDVT 119 Query: 219 PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT-HKPVVDISFDEM 277 G + +G V + V +SG L A A FD ++P V + Sbjct: 120 DPPPPGV---GGPVVGPDEGKDTAVLNPVLLSGDDLTDAGAKFDQDQTNRPSVSLKLKSE 176 Query: 278 GARRFFEVTRDNI-----GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 GA+++ +VT N +A+VLD +V++AP +NQ I G QISGNFT+E A LA Sbjct: 177 GAKKWAKVTEKNSKKGPPNNRIAIVLDPKVISAPTVNQPINGGSVQISGNFTVEEAKDLA 236 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392 +L AG+LP L I+E R+VG LG D+I G A + G LI LFM+V YG GL+A+ Sbjct: 237 NLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYYGLPGLIANI 296 Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452 ++ L + LTL LS LGA LTLP IAG+VLGIG+AVD+N+L+ ERI+EE RK +S+ + Sbjct: 297 ALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAF 356 Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 GF A+STI DSNIT LIA +LFFFG G V+GFA T+ + IL S+FTA+ + R ++ Sbjct: 357 KKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLE 416 Query: 513 FIIR----------YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562 +++ KK K +IN + I F++ R W + SI+ I I Sbjct: 417 LLVKRGDKKPFLFGVKKKKIHNINE-----GVTIFDRIDFVKKRKWFLIFSIVLVIAGII 471 Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF-DGEKNFLVRL 621 + F GLN GIDF GG + + ++PVDL VR++L+ L +G+++ F LVR Sbjct: 472 IFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSDNNQVLVRT 531 Query: 622 -QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680 D A T ++ +K + TI ++E VGP + +EL R I+ V+I+ I + Sbjct: 532 YGILSDDEEADTEIVAKLKNALKND-KGGTIPSSETVGPTVGKELARNAIIAVLIALIGI 590 Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 L+YI IRF+W F+LGAI L+ D+ +GFF+LF +E +LT +AA+LT+IGYS+ND VVV Sbjct: 591 LLYILIRFEWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVV 650 Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800 +DR+R+N++LY R++++KSIN+TL R++ TS+ + +L + ++GGS + +F++ Sbjct: 651 FDRIRENLRLYKKK-DLREIVNKSINQTLSRTINTSLTTLLVLLALLIFGGSSLRNFSLA 709 Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831 + G++V SSIFIAAP+ L + R K Sbjct: 710 LLVGLIVGTYSSIFIAAPLWLDLEKRRLKKK 740 Score = 51.0 bits (123), Expect = 1e-06 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 13/64 (20%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MRN W++ +++ IG+ A P F+ + I+LGLDL+GG ++LEV Sbjct: 1 MRNKRWVIFFLTLLLLIGIYYASPKFVTK-------------NINLGLDLQGGFEVLLEV 47 Query: 61 DEDD 64 D Sbjct: 48 SPAD 51 >gnl|CDD|173189 PRK14726, PRK14726, bifunctional preprotein translocase subunit SecD/SecF; Provisional. Length = 855 Score = 691 bits (1784), Expect = 0.0 Identities = 338/834 (40%), Positives = 508/834 (60%), Gaps = 29/834 (3%) Query: 5 PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64 W IL ++ G+ IA PN L ++ L PS +P +++LGLDL+GGSH+VL+V+ D Sbjct: 6 RWKTILIWLVVLAGVAIAAPNLLSEAQLASLPSWLPHRQVTLGLDLQGGSHIVLKVERSD 65 Query: 65 FVNGFLQMYSDELRSFLKKEGIGVFSM----RQIQNKIT----LSFADSRFKENIADKVT 116 V L+ +R+ L+ GI + + +Q +IT A K + V+ Sbjct: 66 IVKDRLEETVANIRNALRDAGIRYTGLTGNGQTVQVRITDPAQTQAAVDALKP-LTAPVS 124 Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 G +S + L E ++ + L+ ID +S A+ QS+E++R+R+ ++G Sbjct: 125 AGGLGGSSIQEL-----TLQEGGEGQLRLQLTDAGIDYRVSSALTQSIEVVRRRVAELGT 179 Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG------- 229 +E I+R G RI++Q+PG DP RL+ LL AK+SF V + + + G Sbjct: 180 TEPLIRRQGDDRIVVQVPGLVDPQRLKNLLNQPAKLSFRLVDSSMPAQEALNGRPPATSE 239 Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289 V + D YLVE + +SG +L A FDP+T++PVV D G +RF + T+ N Sbjct: 240 VLYSLDDPPVPYLVERRAFVSGENLVDAQPVFDPQTNEPVVTFRLDAEGTQRFAQATQQN 299 Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349 +GK A+VLDG+V++APVI++AI G+ +ISGNF+ + A LA +LRAG+LP L +VEE Sbjct: 300 VGKHFAIVLDGQVISAPVIDEAITGGEGRISGNFSEQGANDLAVLLRAGALPATLTVVEE 359 Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409 R VG LG+DSI G A + +L+ MI YG G++A ++ +NV+L +A+LSLLG Sbjct: 360 RTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVLIIAVLSLLG 419 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469 ATLTLP IAGIVL IG+AVDSN+L+ ERIREE + S+ +LD GFSRA +TI D+N+T Sbjct: 420 ATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVT 479 Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529 LIA V+LFF G GAVRGFA+T+ + IL ++FTA ++ R+++ +R ++ K + P Sbjct: 480 ILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLVAVWLRRRRPKHL---PKG 536 Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589 + + I+FM R + +S S+ S+ L T GLN GIDF GG + V A + Sbjct: 537 VRTGLFEGANIRFMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQGN 596 Query: 590 -DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648 D++ +R+ L L +G++ + F ++ L+R+ Q G A+ + +V+ ++ + Sbjct: 597 ADIADIRARLNELNLGEVQVERFGSPRDALIRIASQDGGENAEQSAVTLVRGELEDDY-- 654 Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708 + E+VGP +S EL +GV+ + A+LIYIWIRF+W FA+GAI + D+ TL Sbjct: 655 -DFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQFAVGAIIATLHDVILTL 713 Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768 G F L GIEFNLT++AA+LT++GYS+ND VVVYDR+R+N++ Y + LID SIN+T Sbjct: 714 GLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRY-KKMPLPILIDASINQT 772 Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822 L R+V TS +++L + ++GG VI SF M FG+ V SSI+IAAP+L+ Sbjct: 773 LSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLIV 826 >gnl|CDD|180271 PRK05812, secD, preprotein translocase subunit SecD; Reviewed. Length = 498 Score = 510 bits (1315), Expect = e-145 Identities = 218/532 (40%), Positives = 323/532 (60%), Gaps = 45/532 (8%) Query: 6 WLVILYSMICCIGLLIALPNFLPQ--SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63 W +L ++ IGLL ALPN + A+ + LGLDLRGG H +LEVD D Sbjct: 1 WKYLLILLVLLIGLLYALPNLRGALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMD 60 Query: 64 DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123 D + L+ +D+LRS L+++ I + ++F D DK L+ ++ Sbjct: 61 DALKKRLESLADDLRSLLREKKIRY-------GGVEITFRD----AEDRDKAIALLRKLS 109 Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183 S L++ + ++ A+EQ++EIIR R++++G++E IQR Sbjct: 110 S----------------------LTEAELKEITEEALEQAIEIIRNRVNELGVAEPVIQR 147 Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF--------GVRFLRD 235 G+ RI+++LPG QD +R +++LG TA + F V N Sbjct: 148 QGADRIVVELPGVQDTARAKEILGKTATLEFRLVDENADAAAAAAASGRVPPGSELLPER 207 Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295 L++ V ++G + A+A+FD +PVV+I+ D GA++F ++T+ NIGK +A Sbjct: 208 DGQQPVLLKKPVILTGDDITDASASFDQ-QGQPVVNITLDSEGAKKFADITKANIGKRMA 266 Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355 +VLDG V++APVI AI G AQI+GNFT E A LA +LRAG+LP L IVEER +G Sbjct: 267 IVLDGEVISAPVIQSAITGGSAQITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPS 326 Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415 LG+DSI G A + GL L++LFMI+ Y +GL+A+ ++ N++L LA+LSLLGATLTLP Sbjct: 327 LGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILAVLSLLGATLTLP 386 Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 IAGIVL IG+AVD+N+L+ ERIREE R+ +S+ +++ GF RA+STI DSNIT LIA + Sbjct: 387 GIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAI 446 Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-IRYKKMKSIDIN 526 +L+ G G V+GFA+T+G+ IL SMFTAI++ RA++ + R K++K + I Sbjct: 447 ILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGRRKRLKKLSIG 498 Score = 48.3 bits (116), Expect = 8e-06 Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 45/209 (21%) Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT--LIL 702 PL I +GP + + IR G++ +I +L+++ + +Y G I L+ Sbjct: 312 PAPL-EIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMIL---YYRLFGLIANIALVA 367 Query: 703 DITKTLGFFALFGIEFNLTAVAA-VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761 ++ L +L G L +A VLT IG +V+ V++++R+R+ ++ Sbjct: 368 NLVLILAVLSLLGATLTLPGIAGIVLT-IGMAVDANVLIFERIREELR------------ 414 Query: 762 DKSINETLGRSVYTSMAA----------------FISVLPMAVWG-GSVIGSFAIPMAFG 804 GRS+ +++ A I+ + + G G V G FA+ + G Sbjct: 415 -------EGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKG-FAVTLGIG 466 Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833 I+ + ++I + ++ +Y R + ++ Sbjct: 467 ILTSMFTAITVTRALVNLLYGRRKRLKKL 495 >gnl|CDD|171842 PRK13023, PRK13023, bifunctional preprotein translocase subunit SecD/SecF; Reviewed. Length = 758 Score = 428 bits (1101), Expect = e-120 Identities = 240/671 (35%), Positives = 394/671 (58%), Gaps = 17/671 (2%) Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219 +E + I+RQR++++G ++ G ++I +++PG D L+ +L +SF + Sbjct: 69 LETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDD 128 Query: 220 NNSKKGFMFG-------VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272 S + G + + D YL++ ++G + A A+ +PV+ + Sbjct: 129 TMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITL 188 Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332 + D+ G RR ++T A+V+D +V++AP ++ + + + QI G F ++ A +A Sbjct: 189 TLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMA 248 Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392 +LR+G+LP + ++EER + + LG D A + +++ LFM++ YG G++A Sbjct: 249 VVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALV 308 Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452 ++ +N+I+ A+LSL+GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK SV ++ Sbjct: 309 ALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAM 368 Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512 + GF RA STI D+N+T LIA +VLF G G V GFA+T+ + I ++FT ++ R ++ Sbjct: 369 ESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIA 428 Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG 572 +R K K + P R L+P I FMR +F +GIS+L + L G NYG Sbjct: 429 QWVRTAKPKEV---PKRRLKLVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYG 485 Query: 573 IDFKGGIQLGVLA-NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP-GDSVA 630 IDF+GG + + A N +L + L L I ++ LV + Q GD Sbjct: 486 IDFRGGSMVELQARNGDANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAE 545 Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690 QT +++ E + Q ++VGP +S +L R G++ VI+S I + IY+W RF+W Sbjct: 546 QTVAVKLRG----EFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRW 601 Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750 ALGA+ + + D+ G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Sbjct: 602 QLALGAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRR 661 Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810 Y S +ID SIN+TL R++ TS F++ +P+ +GGS I FA+ ++ GI+VA+ Sbjct: 662 Y-KSAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASY 720 Query: 811 SSIFIAAPILL 821 SSIFIAAP+L+ Sbjct: 721 SSIFIAAPLLV 731 Score = 53.1 bits (127), Expect = 3e-07 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%) Query: 6 WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65 WL +L S+I IA PNF + L P +PK ++SLGLDL GGS L+L+V Sbjct: 13 WLAVLVSLI------IASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAG- 65 Query: 66 VNGFLQMYSDELRSFLKKEGIG 87 L+ ++ +R L++ G G Sbjct: 66 -KTDLETTANIMRQRLEELGYG 86 >gnl|CDD|162214 TIGR01129, secD, protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. Length = 397 Score = 400 bits (1030), Expect = e-112 Identities = 170/401 (42%), Positives = 254/401 (63%), Gaps = 21/401 (5%) Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 G L VD +++ +E E++ + A+EQ + I+R R++ +G+SE Sbjct: 8 GARVLLEVDMSTAVVLKLSEAEVN---------AIRKDALEQVITILRNRVNALGVSEPV 58 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN----------NSKKGFMFGV 230 +QR G RI+++LPG D SR + +LG TA + F V N G + Sbjct: 59 VQRQGKDRIVVELPGVTDTSRAKDILGGTATLEFRLVDDESTSPDDALAGNVPAGSE--L 116 Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290 R D YL++ ++G H+ AT++ D ++ +PVV S D GAR F + T+ NI Sbjct: 117 LDSRSGDPKYYLLKKSPVLTGDHITDATSSVDQRSGQPVVSFSLDSEGARIFGDFTQANI 176 Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350 GK LA+VLD +V++AP I +AI G QI+GNFT E A LA +LR+G+LP L I+EER Sbjct: 177 GKRLAIVLDNKVVSAPTIQEAITGGSGQITGNFTAEEANDLALVLRSGALPAPLQILEER 236 Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410 +G LG+DSI G A + GLVL+++FMI+ Y +GL+A ++ +N++L LA+LS GA Sbjct: 237 TIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGA 296 Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470 TLTLP IAG++L IG+AVD+N+L+ ERI+EE R +SV +++ GF RA+STIFD+NIT Sbjct: 297 TLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITT 356 Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511 LIA ++L+ FG G V+GFA+T+ + I+ S+FTA+ R ++ Sbjct: 357 LIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLLL 397 Score = 61.5 bits (150), Expect = 9e-10 Identities = 40/180 (22%), Positives = 88/180 (48%), Gaps = 13/180 (7%) Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704 PL ++ +GP + + I GI +I + +L+++ + ++ F L A L+++I Sbjct: 227 PAPLQILEER-TIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL-FGLIAAIALVINI 284 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 L + FG L +A ++ IG +V+ V++Y+R+++ ++L + + ++ Sbjct: 285 VLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKS-------VRQA 337 Query: 765 INETLGRSVYTSMAA----FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820 I R+ T A I+ L + V+G + FA+ +A GI+ + +++ +L Sbjct: 338 IEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLLL 397 Score = 34.2 bits (79), Expect = 0.15 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 46 LGLDLRGGSHLVLEVDEDD-FVNGFLQMYSDELRSFLKKEGIGVFSMR 92 LGLDLRGG+ ++LEVD V + + +R ++ I + R Sbjct: 1 LGLDLRGGARVLLEVDMSTAVVLKLSEAEVNAIRKDALEQVITILRNR 48 >gnl|CDD|183831 PRK12933, secD, preprotein translocase subunit SecD; Reviewed. Length = 604 Score = 300 bits (770), Expect = 9e-82 Identities = 167/487 (34%), Positives = 276/487 (56%), Gaps = 43/487 (8%) Query: 44 ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSF 102 I LGLDLRGG +L+VD D D +R FL+++ I S+R +++ ++ Sbjct: 126 IKLGLDLRGGVQFLLDVDVDPVYQEQRDALVDSVRQFLREQRIRGVSVRLDDSDQLAVTT 185 Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNL----LVTTTEKEISIVLSQNNIDQVISH 158 D+ + V F+Q +N + + ++ + + LSQ + + Sbjct: 186 PDNDARS----AVRQFIQ-----------QNYPGWQVTNSDDRGLQLKLSQQEKTKFRNL 230 Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218 ++Q+++I+R RI+++GI+E+ +QR G HRI I+LPG QDP+ + ++G TA ++F++V Sbjct: 231 TVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFYEVK 290 Query: 219 PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG 278 + S + L+D +G V + + G H+ A A+ + V+IS D G Sbjct: 291 ESGS-----VNAKVLKDKNGRPVYVARRPVLGGEHIVDARASLG-EMGMAEVNISLDRAG 344 Query: 279 ARRFFEVTRDNIGKPLAVVL--------DGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330 ++ + +RDNIGKP+A + VI+ A + ++Q+ F I AG Sbjct: 345 GKKMSDFSRDNIGKPMATSYSEYSRDEQGKTKQSEEVISVA--TIQSQLGDRFRITGAGS 402 Query: 331 ------LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384 LA +LRAGSL + IVEER +G LG+++I G A+ G+ + +LFM + Y Sbjct: 403 YQEAQQLALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYR 462 Query: 385 KWGLVADFSIFLNVILTLALLSLL-GATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443 + G VA+ ++ N++ LL+L+ GA LTLP IAG+VL +G+AVD+N+L+ ERI+++ + Sbjct: 463 RLGWVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLK 522 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503 + +S ++D GF A+STIFD+N T +I VVL+ G G ++GFA+T+GL +L SMFT Sbjct: 523 EGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTG 582 Query: 504 ISIVRAM 510 I RA+ Sbjct: 583 IFASRAL 589 >gnl|CDD|183847 PRK13022, secF, preprotein translocase subunit SecF; Reviewed. Length = 289 Score = 289 bits (743), Expect = 2e-78 Identities = 118/282 (41%), Positives = 175/282 (62%), Gaps = 5/282 (1%) Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599 I FMR R IS+L + SI LFT GLN GIDF GG + V +P DL VR LE Sbjct: 4 IDFMRWRKIWFIISLLLILASIISLFTRGLNLGIDFTGGTVIEVRFEQPADLEQVREALE 63 Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659 D QNF ++ L+RL P +V + + K + ++ E VGP Sbjct: 64 KAGFEDAQVQNFGSSRDVLIRLP--PASEELSEKVKKALNKAYGP--NDAEVRRVEFVGP 119 Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719 ++ +EL +KG++ ++++ + +LIYI RF+W FALGAI L+ D+ TLG F+LF IEF+ Sbjct: 120 QVGKELAQKGLLALLVALVGILIYIAFRFEWRFALGAIIALLHDVIITLGIFSLFQIEFD 179 Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779 LT +AA+LT+IGYS+ND VVV+DR+R+N + +F ++I+ SIN+TL R++ TS+ Sbjct: 180 LTVIAALLTIIGYSLNDTVVVFDRIRENFRKIRRK-TFAEIINLSINQTLSRTIITSLTT 238 Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821 + VL + ++GG + FA+ + GI+V SSIF+A+P+LL Sbjct: 239 LLVVLALYLFGGGTLHDFALALLIGIIVGTYSSIFVASPLLL 280 Score = 64.4 bits (158), Expect = 1e-10 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 25/172 (14%) Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW--GLVADFSIFLNVILTLALLSLLG 409 VG +G + KG A++ LV I+++ I +W L A ++ +VI+TL + SL Sbjct: 117 VGPQVGKELAQKGLLALLVALVGILIY-IAFRFEWRFALGAIIALLHDVIITLGIFSLFQ 175 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRA 459 L IA ++ IG +++ ++V +RIRE RK N S+ +L SR Sbjct: 176 IEFDLTVIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTL----SR- 230 Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI----SMFTAISIV 507 TI S +T L+ + L+ FGGG + FA+ + + I++ S+F A ++ Sbjct: 231 --TIITS-LTTLLVVLALYLFGGGTLHDFALALLIGIIVGTYSSIFVASPLL 279 >gnl|CDD|171815 PRK12911, PRK12911, bifunctional preprotein translocase subunit SecD/SecF; Reviewed. Length = 1403 Score = 261 bits (669), Expect = 4e-70 Identities = 184/566 (32%), Positives = 311/566 (54%), Gaps = 49/566 (8%) Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353 +AVVLDG V++ PV+N + A +SG F+ LA L++G++ ++ E + Sbjct: 842 MAVVLDGYVVSDPVLNVPLKD-HASVSGKFSHREVHRLATDLKSGAMSFVPEVLSEEVIS 900 Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413 +LG +G ++ GL ++++ M V Y G++A ++ LN++L A L L A LT Sbjct: 901 PELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYLDAPLT 960 Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473 L +AGIVL +G+AVD+N+LV ERIREE ++S+ S++ G+ +A+S IFDSN+T ++A Sbjct: 961 LSGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILA 1020 Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533 + +L G ++GFA+T+ + I SMFTA+ + + F+I K + ++ +++F Sbjct: 1021 SALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTK--FFFMIWMNKTQETQLHMMNKFIG 1078 Query: 534 IPDCIAIQFMRA--RFWGVGISILFSICSICLLFTHGLN-YGIDFKGG--IQLGVLANRP 588 I F++ R W V S+L C + L F + G+DFKGG + L Sbjct: 1079 IKH----DFLKECKRLWVVSGSVLVLGC-VALGFGAWNSVLGMDFKGGYALTLDPSDVCE 1133 Query: 589 VDLSVVRSNLES--LQIG----DISFQNFD-GEK-------NFLVRLQYQPGDSVAQ--- 631 D+ +RS L QIG D + FD EK N L R++ G Q Sbjct: 1134 YDVEQMRSKLRKKFQQIGLSSRDFRIRTFDSSEKIKIYFSQNALDRVEAIEGAGSEQSDH 1193 Query: 632 --TRVLEMVKKKITEIVP--LSTIQNTEI-VGPKISRELIRKGIVGVIISAIAMLIYIWI 686 VL ++ ++ QN V ++S ++ + ++ + + +L+Y+ + Sbjct: 1194 HLALVLGVLSDTGSDTSSEVFDATQNFWFKVSGQLSNKMRTQAVIALFGALGIILLYVSL 1253 Query: 687 RFKWYFALGAITTLILDITKT------LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740 RF+W +A AI LI D+ T L FF L I+ +L A+ A++T++GYS+N+ +++ Sbjct: 1254 RFEWRYAFSAICALIHDLLATCAVLVALHFF-LQKIQIDLQAIGALMTVLGYSLNNTLII 1312 Query: 741 YDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVIGSF 797 +DR+R++ KL+T LI+ ++ +TLGR+V T+ A +SVL + ++ GG I +F Sbjct: 1313 FDRIREDRQEKLFT---PMPILINDALQKTLGRTVMTT-ATTLSVLLILLFVGGGSIFNF 1368 Query: 798 AIPMAFGIVVAASSSIFIAAPILLFI 823 A M GI++ SS++IA P+LLF+ Sbjct: 1369 AFIMTIGILLGTLSSLYIAPPLLLFM 1394 Score = 44.8 bits (106), Expect = 1e-04 Identities = 38/179 (21%), Positives = 86/179 (48%), Gaps = 17/179 (9%) Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL-ALLSLLGAT----- 411 S+ + + G + I+L + L +W FS +I L A ++L A Sbjct: 1229 SNKMRTQAVIALFGALGIILLYVSLRFEWRYA--FSAICALIHDLLATCAVLVALHFFLQ 1286 Query: 412 ---LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468 + L +I ++ +G ++++ +++ +RIRE+ ++ +F + + + A + Sbjct: 1287 KIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEK--LFTPMPILINDALQKTLGRTV 1344 Query: 469 ----TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523 T L ++L F GGG++ FA M + IL+ +++ I +++F++R ++ S+ Sbjct: 1345 MTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERNSL 1403 Score = 34.8 bits (80), Expect = 0.080 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 3/48 (6%) Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217 R++++G+SE ++R G H I + +PG S ++LGT+ KMSFH V Sbjct: 618 RLNKLGVSEVEMRREGDH-IHLSVPGSAGISS-AEILGTS-KMSFHVV 662 >gnl|CDD|162137 TIGR00966, 3a0501s07, protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. Length = 246 Score = 227 bits (580), Expect = 1e-59 Identities = 99/249 (39%), Positives = 159/249 (63%), Gaps = 3/249 (1%) Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627 G N+GIDF GG + + D++ VR LE I + Q F ++R+ + Sbjct: 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTE 60 Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687 + R E +++ + + P + I++ + VGP + EL RK ++ ++ + + +LIYI +R Sbjct: 61 QSEELR--EALEEALKNVDPDAEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVR 118 Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747 F+W FALGAI L+ D+ T+G ++LFGIE NLT VAA+LT+IGYS+ND VVV+DR+R+N Sbjct: 119 FEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVFDRIREN 178 Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807 ++ YT +F ++I+ SIN+TL R++ TS+ ++VL + V+GG VI F++ + G++V Sbjct: 179 LRKYTRK-TFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIV 237 Query: 808 AASSSIFIA 816 SSIFIA Sbjct: 238 GTYSSIFIA 246 Score = 65.0 bits (159), Expect = 8e-11 Identities = 51/195 (26%), Positives = 102/195 (52%), Gaps = 13/195 (6%) Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378 + + E L L+ I VG +G + K A++A LVLI+++ Sbjct: 57 LDTEQSEELREALEEALKNVDPDA--EIRSIDAVGPSVGGELARKAVLALLAALVLILIY 114 Query: 379 MIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437 + V + ++ L A ++ +VI+T+ + SL G + L ++A ++ IG +++ ++V +R Sbjct: 115 ITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVFDR 174 Query: 438 IREENRK------NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 IRE RK + + S++ SR TI S +T L+A + L+ FGGG ++ F++ Sbjct: 175 IRENLRKYTRKTFTEVINLSINQTLSR---TINTS-LTTLLAVLALYVFGGGVIKDFSLA 230 Query: 492 MGLSILISMFTAISI 506 + + +++ +++I I Sbjct: 231 LLVGVIVGTYSSIFI 245 >gnl|CDD|162105 TIGR00916, 2A0604s01, protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. Length = 192 Score = 153 bits (388), Expect = 2e-37 Identities = 64/158 (40%), Positives = 107/158 (67%), Gaps = 3/158 (1%) Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN-VILTLALLSLL 408 VG LG + I G A++ GLVL++L+M++ Y G +A + ++ VIL L +LSL Sbjct: 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLF 94 Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK--NQSVFCSLDMGFSRAYSTIFDS 466 GATLTLP IAG++ IG +VD +++ +RIREE RK ++ ++++G ++ S I D+ Sbjct: 95 GATLTLPGIAGLLTIIGYSVDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDT 154 Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504 N+T L+A + L+ FGGGA++GFA+T+G+ ++ +++I Sbjct: 155 NVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192 Score = 147 bits (372), Expect = 1e-35 Identities = 60/158 (37%), Positives = 101/158 (63%), Gaps = 1/158 (0%) Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715 VGP + ELI+ GI+ ++I + +L+Y+ +R++W A+ AI L+ D+ LG +LFG Sbjct: 36 TVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFG 95 Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775 L +A +LT+IGYSV+D VV++DR+R+ ++ Y +FR+ I+ IN+TL R + T Sbjct: 96 ATLTLPGIAGLLTIIGYSVDDTVVIFDRIREELRKYKGR-TFREAINLGINQTLSRIIDT 154 Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813 ++ ++VL + V+GG I FA+ + G++ SSI Sbjct: 155 NVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192 >gnl|CDD|171840 PRK13021, secF, preprotein translocase subunit SecF; Reviewed. Length = 297 Score = 151 bits (384), Expect = 6e-37 Identities = 80/274 (29%), Positives = 151/274 (55%), Gaps = 6/274 (2%) Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603 + R+ ISI+ + S+ ++ G N+G+DF GG+ V +R + S ++ L + Sbjct: 8 KWRYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQ 67 Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663 ++S + E V L+Y P D+ ++ + V + N+ IVGP++ + Sbjct: 68 QEVSVIS-ASEPGRWV-LRYAPADTAQSNVDIQQALAPLGTEV---QVLNSSIVGPQVGQ 122 Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723 EL +G + ++++ + +L Y+ RF+W A GA+ L+ D+ L FFAL +EFNLT + Sbjct: 123 ELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFALTQMEFNLTVL 182 Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783 AAVL ++GYS+ND +++ DR+R+ + + ++ +++ +++I T R++ TS ++V Sbjct: 183 AAVLAILGYSLNDSIIIADRIRELL-IAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTV 241 Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817 + + GG + F+I M GI+ SSI + Sbjct: 242 GALWIMGGGPLEGFSIAMFIGILTGTFSSISVGT 275 Score = 58.3 bits (141), Expect = 7e-09 Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 5/159 (3%) Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV--ADFSIFLNVILTLALLSLLG 409 VG +G + +G A++ ++ I+ ++ + +W L A F++ +VI LA +L Sbjct: 116 VGPQVGQELAEQGGLALLVAMLCILGYLSYRF-EWRLASGALFALVHDVIFVLAFFALTQ 174 Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS--LDMGFSRAYSTIFDSN 467 L +A ++ +G +++ +I++ +RIRE + + +S ++ Sbjct: 175 MEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTS 234 Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506 T L+ L+ GGG + GF+I M + IL F++IS+ Sbjct: 235 GTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISV 273 >gnl|CDD|181396 PRK08343, secD, preprotein translocase subunit SecD; Reviewed. Length = 417 Score = 125 bits (317), Expect = 4e-29 Identities = 99/364 (27%), Positives = 163/364 (44%), Gaps = 52/364 (14%) Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220 + +EI+ R++ +G+ + + +G I++++PG D ++++ Sbjct: 66 DLVVEILESRLNALGLKDIKVYPVGDQYIVVEVPGV-DADTAKEIIEKQGV--------- 115 Query: 221 NSKKGFMFGVRFLRDSDGNQY-LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279 F R + N+ L D +E G + + DP V + E GA Sbjct: 116 -------FEARIQTPGNNNETVLTGDDIESVG------SPSQDPSGGAWGVPFTLSEDGA 162 Query: 280 RRFFEV------TRDNIGKPLAVVLDGRVLTAPVIN----QAIPSGKAQISGNFTIET-- 327 +F EV T D G PL + LDG ++ A ++ + SG I+ T T Sbjct: 163 EKFAEVAKGKGATDDPSGHPLDMYLDGELIYAAPLSPDLASGLASGPVVITVGSTGTTEE 222 Query: 328 ----AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL--VLIVLFMIV 381 A L LR+G+LP+KL+I +V LG +K +++AGL +L V ++ Sbjct: 223 AKEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQ--FK-KGSLIAGLLALLAVALVVF 279 Query: 382 L-YGKWGLVAD--FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV-NER 437 L Y + + + VI+ L +L+G L L SIAGI+ IG VD I++ +E Sbjct: 280 LRYREPRIALPMVITSLSEVIIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEV 339 Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497 + E ++ VF S RA+ IF + T + A L G G ++GFAIT L +L Sbjct: 340 LHEGKVPSRKVFLS---RIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGVL 396 Query: 498 ISMF 501 I + Sbjct: 397 IGVL 400 Score = 36.0 bits (84), Expect = 0.044 Identities = 39/178 (21%), Positives = 86/178 (48%), Gaps = 19/178 (10%) Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704 V L I+ + V P + + + ++ +++ +A+ + +++R++ AL + T + ++ Sbjct: 241 VKLD-IEGSGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYREPRIALPMVITSLSEV 299 Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764 LGF AL G + +L ++A ++ +IG V+D +++ D + L+ + R + Sbjct: 300 IIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEV-----LHEGKVPSRKVFLSR 354 Query: 765 INETLGRSVYTSMAA----FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 I R+ + AA ++ P+AV G + FAI G+++ + I P Sbjct: 355 I----KRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGVLIG----VLITRP 404 Score = 29.1 bits (66), Expect = 4.6 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 8/51 (15%) Query: 548 WGVGISILFSICSICLLFTH--------GLNYGIDFKGGIQLGVLANRPVD 590 W V + I+ + SI +F L YG+D GG + + PV Sbjct: 11 WRVLLLIVLVLASIVAIFPPGGGPGGFTNLQYGLDLSGGSWIQLKLEGPVT 61 >gnl|CDD|181485 PRK08578, PRK08578, preprotein translocase subunit SecF; Reviewed. Length = 292 Score = 78.0 bits (193), Expect = 8e-15 Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 9/170 (5%) Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626 + GIDF GG ++ + N + S L D+ + +G + + G Sbjct: 40 SPVKLGIDFTGGTEITIQTN-DASPDELESALSGEPGVDVRKGSGNG-----YIITFGSG 93 Query: 627 DSVAQTRVLEMVKKKIT-EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 D ++ + VK+ + + +I GP + + + V + I M + ++ Sbjct: 94 DDTDVDKLADAVKEFFNVDSISELNYSEKQI-GPTFGSQFQEQALKAVGFAFIGMAVVVF 152 Query: 686 IRFKWYFALGA-ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 + F+ A I + DI L LFGIE +L VAA+L LIGYSV Sbjct: 153 LIFRTPVPSLAVILSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSV 202 Score = 52.2 bits (126), Expect = 5e-07 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%) Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451 S F ++I+ LAL++L G L+L ++A +++ IG +VDS+IL+ R+ + + Sbjct: 166 LSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDILLTTRVLKRRG-------T 218 Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFF 480 D RA T +T + A VL+ Sbjct: 219 FDESIKRAMRTGITMTLTTIAAMAVLYIV 247 >gnl|CDD|162109 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. Length = 719 Score = 54.8 bits (132), Expect = 9e-08 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 10/188 (5%) Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397 GS I +I ER G D+G+ T AI LV++VL + L+ I Sbjct: 179 GSPAINYDI--EREFGKDMGT------TMAISGILVVLVLLLDFKRWWRPLLPLVIILFG 230 Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457 V L ++ LG L ++ + + IG+ +D I R EE ++ ++ Sbjct: 231 VAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVR 290 Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--I 515 R + + +T L V F + + ++ + + ++ A++ I Sbjct: 291 RTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPALLQSIDIG 350 Query: 516 RYKKMKSI 523 R K K I Sbjct: 351 REKVKKEI 358 Score = 49.5 bits (118), Expect = 4e-06 Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 18/179 (10%) Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF 718 I RE + + IS I +++ + + FK W+ L + ++ + LG GI Sbjct: 186 DIEREFGKDMGTTMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWLGIPL 245 Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET----LGRSVY 774 T + AV LIG ++ + +R + + + I ++ T L + Sbjct: 246 YATTLLAVPMLIGVGIDYGIQTLNRYEEE---RDIGRAKGEAIVTAVRRTGRAVLIALLT 302 Query: 775 TS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830 TS A +S PM + F + + G++ A ++ + +L I R K Sbjct: 303 TSAGFAALALSEFPM-------VSEFGLGLVAGLITAYLLTLLVLPALLQSIDIGREKV 354 Score = 46.4 bits (110), Expect = 3e-05 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 1/141 (0%) Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431 LVL++L + + +I ++ + L+ L G L I + +GL +D + Sbjct: 579 LVLMILLAVFRNPIKAVFPLIAIGSGILWAIGLMGLRGIPSFLAMATTISIILGLGMDYS 638 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491 I + ER EE RK ++ R I S +T + L +R F + Sbjct: 639 IHLAERYFEE-RKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLV 697 Query: 492 MGLSILISMFTAISIVRAMMI 512 G+ +L S+ A+ + A+++ Sbjct: 698 QGIGVLSSLTAALVVFPALLV 718 >gnl|CDD|163284 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921. Length = 862 Score = 48.8 bits (117), Expect = 6e-06 Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 50/222 (22%) Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA--------TLTLPSIA 418 A VAGL+ VL +++L+ L + + V++TL + +L A L L S+A Sbjct: 271 ATVAGLLSFVLVLVLLW--LALRS-PRLVFAVLVTLIVGLILTAAFATLAVGHLNLISVA 327 Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL----IAT 474 VL IGL VD I + R REE A S AL +AT Sbjct: 328 FAVLFIGLGVDFAIQFSLRYREER--------FRGGNHREALSVAARRMGAALLLAALAT 379 Query: 475 VVLFF-FGGGAVRGFA---ITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKS 522 FF F +G + I G + I++F ++++ A++ + Y + Sbjct: 380 AAGFFAFLPTDYKGVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRRRKPPGYATLA- 438 Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564 PL F R R +G++++ I ++ LL Sbjct: 439 ----PLDAF----------LRRHRRPVLGVTLILGIAALALL 466 Score = 31.5 bits (72), Expect = 0.82 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Query: 364 GTCAIVA-GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422 A+VA ++L++ V L + L +LT+A + LLG +I + L Sbjct: 718 FIYALVAITVLLLLTLRRVRDVLLVLAP---LLLAGLLTVAAMVLLGIPFNFANIIALPL 774 Query: 423 GIGLAVDSNILVNERIREE 441 +GL VD I + R R Sbjct: 775 LLGLGVDFGIYMVHRWRNG 793 Score = 29.6 bits (67), Expect = 3.1 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736 AI +L+ + +R L L+L T+ L GI FN + A+ L+G V+ Sbjct: 724 AITVLLLLTLRRVRDVLLVLAP-LLLAGLLTVAAMVLLGIPFNFANIIALPLLLGLGVDF 782 Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782 + + R R + +L+ S + S T+ AF S Sbjct: 783 GIYMVHRWRNGVDS-------GNLLQSSTARAVFFSALTTATAFGS 821 >gnl|CDD|162104 TIGR00915, 2A0602, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873. Length = 1044 Score = 45.9 bits (109), Expect = 5e-05 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 17/190 (8%) Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI---ISAIAMLIYIWIRFKWYF 692 + VK ++ E+ P Q + V P + + I V+ I AI ++ + F F Sbjct: 304 KAVKAELAELEPFFP-QGMKYVYPYDTTPFVSASIEEVVHTLIEAIVLVFLVMYLFLQNF 362 Query: 693 ALGAITTLILDIT--KTLGFFALFGIEFN-LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749 I T+ + + T A FG N LT A VL IG V+D +VV + + + M Sbjct: 363 RATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMVLA-IGLLVDDAIVVVENVERVMA 421 Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806 + ++ KS+ + G V +M +PMA +GGS + F+I + + Sbjct: 422 --EEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 807 VAASSSIFIA 816 + S+ +A Sbjct: 480 L----SVLVA 485 Score = 42.0 bits (99), Expect = 6e-04 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 26/169 (15%) Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKW--GLVADFSIFLNVILTLALLSLLGATLTLP 415 S SI + ++ +VL+ L M + + L+ ++ + ++ T A+L+ G ++ Sbjct: 334 SASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTL 393 Query: 416 SIAGIVLGIGLAVDSNILVNERI-----------REENRKNQSVFCSLDMGFSRAYSTIF 464 ++ +VL IGL VD I+V E + +E RK+ +G + S +F Sbjct: 394 TMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVF 453 Query: 465 DSNITALIATVVLFFFGG--GAV-RGFAITMGLSILISMFTAISIVRAM 510 V + FFGG GA+ R F+IT+ ++ +S+ A+ + A+ Sbjct: 454 ----------VPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 >gnl|CDD|169983 PRK09579, PRK09579, multidrug efflux protein; Reviewed. Length = 1017 Score = 45.2 bits (107), Expect = 7e-05 Identities = 42/164 (25%), Positives = 83/164 (50%), Gaps = 3/164 (1%) Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431 +V++V+F+ + + L+ +I L++I L + ++G ++ L ++ +VL IGL VD Sbjct: 343 IVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVVDDA 402 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT-ALIATVVLFFFG--GGAVRGF 488 I+V E I + +S F + G + IT A + + F G G + F Sbjct: 403 IVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEF 462 Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532 A+T+ +++IS A+++ M ++R+++ S + L R F Sbjct: 463 ALTLAGAVIISGIVALTLSPMMCALLLRHEENPSGLAHRLDRLF 506 Score = 30.6 bits (69), Expect = 2.0 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 679 AMLIYIWIRFKWYFALGA----ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734 A+LI I + F + AL + + T+ L + L F + G NL + A++ IG V Sbjct: 340 AVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVV 399 Query: 735 NDKVVVYDRMRKNMK 749 +D +VV + + ++++ Sbjct: 400 DDAIVVVENIHRHIE 414 >gnl|CDD|182589 PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional. Length = 1025 Score = 44.3 bits (105), Expect = 1e-04 Identities = 47/196 (23%), Positives = 93/196 (47%), Gaps = 13/196 (6%) Query: 335 LRAGSLP--IKLNIVEERN--VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390 LR ++P I L I ++R+ + A L + T AI LV++V+F+ + G+ L+ Sbjct: 307 LRE-TIPAAIDLQIAQDRSPTIRASLEE---VEQTLAISVALVILVVFLFLRSGRATLIP 362 Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450 ++ +++I T A + L G +L S+ + + G VD I+V E I Sbjct: 363 AVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQ 422 Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV----RGFAITMGLSILISMFTAISI 506 + G T+ +++ L+A + GG R FA+T+ ++I IS+ ++++ Sbjct: 423 AALQGVREVGFTVLSMSLS-LVAVFLPLLLMGGLPGRLFREFAVTLSVAIGISLLVSLTL 481 Query: 507 VRAMMIFIIRYKKMKS 522 M ++++ K + Sbjct: 482 TPMMCAWLLKSSKPRE 497 >gnl|CDD|185081 PRK15127, PRK15127, multidrug efflux system protein AcrB; Provisional. Length = 1049 Score = 43.4 bits (102), Expect = 2e-04 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 30/163 (18%) Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426 AI+ LV +V+++ + + L+ ++ + ++ T A+L+ G ++ ++ G+VL IGL Sbjct: 347 AII--LVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGL 404 Query: 427 AVDSNILVNERI-----------REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475 VD I+V E + +E RK+ +G + S +F V Sbjct: 405 LVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVF----------V 454 Query: 476 VLFFFGG--GAV-RGFAIT----MGLSILISMFTAISIVRAMM 511 + FFGG GA+ R F+IT M LS+L+++ ++ M+ Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATML 497 Score = 37.2 bits (86), Expect = 0.018 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 7/150 (4%) Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL---FGIEFNLTAVAAV 726 +V ++ AI ++ + F F I T+ + + LG FA+ FG N + + Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVV-LLGTFAVLAAFGFSINTLTMFGM 398 Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786 + IG V+D +VV + + + M + ++ KS+ + G V +M +PM Sbjct: 399 VLAIGLLVDDAIVVVENVERVMA--EEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPM 456 Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 A +GGS G+ + IV A + S+ +A Sbjct: 457 AFFGGST-GAIYRQFSITIVSAMALSVLVA 485 >gnl|CDD|129913 TIGR00833, actII, Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. Length = 910 Score = 43.0 bits (101), Expect = 3e-04 Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 8/170 (4%) Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGK---WGLVADFSIFLNVILTLALLSLLG----ATL 412 S K I A +IVL +++L + LV S+ +V++ ++SLLG + Sbjct: 170 SGDKDMNRITATTGIIVLIILLLVYRSPITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGV 229 Query: 413 TLPSIAGIV-LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471 + + L IG D + + R EE RK +S+ + I S +T Sbjct: 230 NAQTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTVA 289 Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521 +A + L + + ++ + +L+++ A+++ A++ R MK Sbjct: 290 VAFLALSLARLPSFKTLGVSCAVGVLVALLNAVTLTPALLTLEGREGLMK 339 Score = 34.9 bits (80), Expect = 0.078 Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 26/163 (15%) Query: 367 AIVAGLVLIVLFMIVLYGKW--GLVADFSIFLNVILTLALLSLL-------GATLTLPSI 417 + L ++ + + +L +V S+ L+ + L L L ++ + Sbjct: 749 ISIITLAIVFMILALLLRAPVAPIVLIGSVALSYLWALGLSVLAFQHILGAELHWSVLAG 808 Query: 418 AGIVLGIGLAVDSNILVNERIREENRK--NQSV---FCSLDMGFSRAYSTIFDSNITALI 472 ++L + L VD N+L+ RI+EE+ + S + A +F + AL Sbjct: 809 VFVLL-VALGVDYNMLLVSRIKEESPAGNRTGIIRALGSTGGVITAA-GLVFAGTMAALA 866 Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515 + + + F T+G+ IL+ F IVR++ + + Sbjct: 867 SAQLTA------IAQFGFTVGVGILLDTF----IVRSVTVPAL 899 >gnl|CDD|182544 PRK10555, PRK10555, aminoglycoside/multidrug efflux system; Provisional. Length = 1037 Score = 41.0 bits (96), Expect = 0.001 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 28/147 (19%) Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431 LV +V+++ + + L+ ++ + ++ T ++L G ++ ++ +VL IGL VD Sbjct: 350 LVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDA 409 Query: 432 ILVNERI-----------REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 I+V E + RE RK+ +G + S +F V + FF Sbjct: 410 IVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVF----------VPMAFF 459 Query: 481 GG--GAV-RGFAIT----MGLSILISM 500 GG GA+ R F+IT M LS+L++M Sbjct: 460 GGTTGAIYRQFSITIVSAMVLSVLVAM 486 Score = 39.4 bits (92), Expect = 0.004 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 9/151 (5%) Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL---FGIEFN-LTAVAA 725 +V ++ AIA++ + F F I T+ + + +G F++ FG N LT A Sbjct: 340 VVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVV-LMGTFSVLYAFGYSINTLTMFAM 398 Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785 VL IG V+D +VV + + + M ++ R+ KS+ + G V +M +P Sbjct: 399 VLA-IGLLVDDAIVVVENVERIMS--EEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455 Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816 MA +GG+ G+ + IV A S+ +A Sbjct: 456 MAFFGGTT-GAIYRQFSITIVSAMVLSVLVA 485 >gnl|CDD|162106 TIGR00917, 2A060601, Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis. Length = 1204 Score = 41.0 bits (96), Expect = 0.001 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 17/148 (11%) Query: 394 IFLNVILTLALLSLLGATLTL---PSIAGIVLGIGLAVDSNILV-------NERIREENR 443 + +V+ ++ + S +G TL I +VL +G+ NI + ER E Sbjct: 615 VLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGV---DNIFILVQTYQRLERFYREVG 671 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG----GAVRGFAITMGLSILIS 499 + +L+ RA + S A ++ + FF G AVR F++ GL++ I Sbjct: 672 VDNEQELTLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFID 731 Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINP 527 I+ A+++ + + +D P Sbjct: 732 FLLQITAFVALLVLDFKRTEDNRVDCFP 759 >gnl|CDD|169981 PRK09577, PRK09577, multidrug efflux protein; Reviewed. Length = 1032 Score = 37.9 bits (88), Expect = 0.010 Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 10/146 (6%) Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431 LV +V+F+ + + L+ + + ++ T ++ G ++ + ++ G+VL IG+ VD Sbjct: 349 LVFLVMFLFMQNFRATLIPTLVVPVALLGTFGVMLAAGFSINVLTMFGMVLAIGILVDDA 408 Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS--NITALIATVVL-FFFGGGAV--- 485 I+V E + E + D +A I + IT ++ +V + F GGAV Sbjct: 409 IVVVENV--ERLMVEEGLSPYDATV-KAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNI 465 Query: 486 -RGFAITMGLSILISMFTAISIVRAM 510 R FA+++ +SI S F A+S+ A+ Sbjct: 466 YRQFALSLAVSIGFSAFLALSLTPAL 491 >gnl|CDD|182501 PRK10503, PRK10503, multidrug efflux system subunit MdtB; Provisional. Length = 1040 Score = 38.2 bits (89), Expect = 0.010 Identities = 49/196 (25%), Positives = 95/196 (48%), Gaps = 14/196 (7%) Query: 325 IETAGILAAMLRA--GSLP--IKLNIVEER--NVGADLGSDSIYKGTCAIVAGLVLIVLF 378 I TA + ML SLP +K+ ++ +R N+ A + D+ ++ AI LV+++++ Sbjct: 303 IATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASV-DDTQFELMLAIA--LVVMIIY 359 Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438 + + ++ ++ L++I T A++ L ++ ++ + + G VD I+V E I Sbjct: 360 LFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENI 419 Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV----RGFAITMGL 494 K + + G TI S +LIA ++ F G V R FA+T+ + Sbjct: 420 SRYIEKGEKPLAAALKGAGEIGFTII-SLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAV 478 Query: 495 SILISMFTAISIVRAM 510 +ILIS ++++ M Sbjct: 479 AILISAVVSLTLTPMM 494 >gnl|CDD|116168 pfam07549, Sec_GG, SecD/SecF GG Motif. This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins. Length = 29 Score = 35.4 bits (83), Expect = 0.065 Identities = 10/26 (38%), Positives = 17/26 (65%) Query: 39 MPKNRISLGLDLRGGSHLVLEVDEDD 64 + ++LGLD GG+ ++LEVD+ Sbjct: 2 LATRGLNLGLDFTGGTQILLEVDQPV 27 Score = 32.3 bits (75), Expect = 0.48 Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 563 LLFTHGLNYGIDFKGGIQL 581 L T GLN G+DF GG Q+ Sbjct: 1 SLATRGLNLGLDFTGGTQI 19 >gnl|CDD|152784 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation. Sterol regulatory element-binding proteins (SREBPs) are membrane-bound transcription factors that promote lipid synthesis in animal cells. They are embedded in the membranes of the endoplasmic reticulum (ER) in a helical hairpin orientation and are released from the ER by a two-step proteolytic process. Proteolysis begins when the SREBPs are cleaved at Site-1, which is located at a leucine residue in the middle of the hydrophobic loop in the lumen of the ER. Upon proteolytic processing SREBP can activate the expression of genes involved in cholesterol biosynthesis and uptake. SCAP stimulates cleavage of SREBPs via fusion of the their two C-termini. This domain is the transmembrane region that traverses the membrane eight times and is the sterol-sensing domain of the cleavage protein. WD40 domains are found towards the C-terminus. Length = 153 Score = 33.7 bits (78), Expect = 0.21 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 12/127 (9%) Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGI---VLGIGLAVDSNILVNERIREENR 443 GL + L+V + L + G TL I VL +G+ + ILV+ R Sbjct: 9 GLAGVIQVLLSVASSFGLCAYFGVPFTLIPGEVIPFLVLAVGVD-NMFILVHAVQRTS-- 65 Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL------ 497 ++ V + +I +++T L+A ++ AV+ F + +++L Sbjct: 66 RSLDVEERIAEALGEVGPSITLTSLTELLAFLIGALTPMPAVQEFCLFAAVAVLFDFLLQ 125 Query: 498 ISMFTAI 504 I+ F A+ Sbjct: 126 ITFFVAV 132 Score = 31.4 bits (72), Expect = 1.0 Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 W++ K+ L + ++L + + G A FG+ F L Sbjct: 1 WVKSKFGLGLAGVIQVLLSVASSFGLCAYFGVPFTL 36 >gnl|CDD|184670 PRK14419, PRK14419, membrane protein; Provisional. Length = 199 Score = 30.3 bits (69), Expect = 2.2 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 7/58 (12%) Query: 770 GRSVYTSMAAFISVLPMAVW--GGSVIGSFAIPMA-FGIVVAASSSIFIAAPILLFIY 824 G++V T + L ++ W G + +G F I +A IV +S S IA P+L+F+ Sbjct: 104 GKAVATGLGML---LALS-WPVGLASLGIFLIVLALSRIVSLSSISAAIALPLLMFLL 157 >gnl|CDD|129992 TIGR00914, 2A0601, heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873. Length = 1051 Score = 29.3 bits (66), Expect = 3.6 Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 27/180 (15%) Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429 A LV+++LF+ + + L+A I L++++T + G + L S+ L GL VD Sbjct: 351 ALLVIVILFLFLGNIRAALIAATVIPLSLLITFIGMVFQGISANLMSLGA--LDFGLIVD 408 Query: 430 SNILVNE----RIREENRKNQSVFCSLDMGFSRAYSTIFDSN--------ITALIATVV- 476 +++ E R+ E + + +F ++ LI T+V Sbjct: 409 GAVVIVENAHRRLAEAQHHHGRQ-----LTLKERLHEVFAASREVRRPLIFGQLIITLVF 463 Query: 477 --LFFFGGGAVRGF---AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531 +F G + F A T+ L++ +M +++ V A + IR K+ + N L R Sbjct: 464 LPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIR-GKVAEKE-NRLMRV 521 >gnl|CDD|183023 PRK11186, PRK11186, carboxy-terminal protease; Provisional. Length = 667 Score = 29.5 bits (67), Expect = 4.0 Identities = 10/30 (33%), Positives = 16/30 (53%) Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642 G K VRL+ P +TR++ + + KI Sbjct: 307 GPKGSKVRLEILPAGKGTKTRIVTLTRDKI 336 >gnl|CDD|150640 pfam09990, DUF2231, Predicted membrane protein (DUF2231). This domain, found in various hypothetical bacterial proteins, has no known function. Length = 100 Score = 29.5 bits (67), Expect = 4.1 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 8/48 (16%) Query: 669 GIVGVIISAIAMLIYIWIRFK-------WYFALGAITTLILDITKTLG 709 GI GV + A+A Y+W R + AL + +L + LG Sbjct: 44 GIGGVSLLALAAARYVW-RLRDPRQVSPSGLALSLVVVALLGVQGWLG 90 >gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional. Length = 499 Score = 29.2 bits (65), Expect = 4.8 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 9/73 (12%) Query: 665 LIRKGIVGVI-ISAIAMLIYIWIRF----KWYFALGAITTLILDITKTLG--FFALFGIE 717 I + G++ I+A+A+ ++ W F +W FAL A+T I+ +G +FA Sbjct: 115 FINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALT--IVGTMNMIGVKWFAEMEFW 172 Query: 718 FNLTAVAAVLTLI 730 F L V A++T + Sbjct: 173 FALIKVLAIVTFL 185 >gnl|CDD|148191 pfam06437, ISN1, IMP-specific 5'-nucleotidase. The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway. Length = 404 Score = 29.2 bits (66), Expect = 5.0 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%) Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205 ++ E R+R +I +++L I SRL+ L Sbjct: 45 ESETAEETRRRYAEI---FRDVEKLIDDHIEHDKDNSPGRSRLKLL 87 >gnl|CDD|162816 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. Length = 595 Score = 28.8 bits (65), Expect = 5.3 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 30/137 (21%) Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122 DDF + +DE F K+EGI + + A R KE A+K + L V Sbjct: 221 DDFDQRIIDWLADE---FKKEEGIDLSKDKM---------ALQRLKE-AAEKAKIELSSV 267 Query: 123 NSK------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176 S + D + K + + L++ +++ + +E++ E +RQ + G+ Sbjct: 268 LSTEINLPFITADA-------SGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGL 320 Query: 177 SESTIQRL----GSHRI 189 S S I + GS RI Sbjct: 321 SASDIDEVILVGGSTRI 337 >gnl|CDD|182892 PRK10999, malF, maltose transporter membrane protein; Provisional. Length = 520 Score = 28.8 bits (65), Expect = 5.9 Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 4 NPWLVILYSMICCIGLLIALP 24 N WL Y MI C+GLL A+P Sbjct: 382 NTWLGYPYMMILCMGLLKAIP 402 >gnl|CDD|183128 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional. Length = 261 Score = 28.8 bits (65), Expect = 6.5 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818 + R + I+++ +VWG G+F + M+ +++AAS+S F P Sbjct: 86 RQILRMIQKFPKPVIAMVEGSVWG----GAFELIMSCDLIIAASTSTFAMTP 133 >gnl|CDD|162210 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family. Length = 313 Score = 28.6 bits (64), Expect = 6.6 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%) Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDN--IGKPLAVVLDGRVLTAPVINQAIPSGKAQ 318 DP H + +E+GA FF +T D + PL+ + + ++ A G Sbjct: 181 LDPVEHTYI-----EEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEV 235 Query: 319 ISGNFTIE 326 I+ Sbjct: 236 EERRIDID 243 >gnl|CDD|182833 PRK10913, PRK10913, dipeptide transporter; Provisional. Length = 300 Score = 28.6 bits (64), Expect = 6.7 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 7/75 (9%) Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMI------VLYGKWGLVADFSIFLNVILTLAL 404 +VG D+ S +Y +++ G +++VL ++ ++ G +G + D I V + LAL Sbjct: 85 DVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLAL 144 Query: 405 LSLLGATLTLPSIAG 419 SLL A L L +I G Sbjct: 145 PSLLLA-LVLVAIFG 158 >gnl|CDD|172088 PRK13498, PRK13498, chemoreceptor glutamine deamidase CheD; Provisional. Length = 167 Score = 28.6 bits (64), Expect = 6.7 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 16/56 (28%) Query: 184 LGSHRILIQLPGE----QDPSRLRQLLGTTAKMSF-----------HKVLPNNSKK 224 +G+ I++Q PGE P+RLR LLG+ ++F H +LP +K Sbjct: 5 VGTKEIVLQ-PGEVVFATRPTRLRTLLGSCVAITFWHPQQHIGGMCHFMLPGRIRK 59 >gnl|CDD|162966 TIGR02666, moaA, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. Length = 334 Score = 28.3 bits (64), Expect = 7.7 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 32/86 (37%) Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329 V++S D + RF ++TR L VL G I+ A Sbjct: 116 VNVSLDSLDPERFAKITRRGGR--LEQVLAG------------------------IDAA- 148 Query: 330 ILAAMLRAGSLPIKLNIVEERNVGAD 355 L AG P+KLN V R V D Sbjct: 149 -----LAAGLEPVKLNTVVMRGVNDD 169 >gnl|CDD|181438 PRK08471, flgK, flagellar hook-associated protein FlgK; Validated. Length = 613 Score = 28.5 bits (64), Expect = 8.2 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Query: 48 LDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLK 82 LDLRG ++ + ++G +Q Y D L +F K Sbjct: 300 LDLRGRNY---DGGSGGTLDGKIQDYIDNLDTFAK 331 >gnl|CDD|118166 pfam09632, Rac1, Rac1-binding domain. The Rac1-binding domain is the C-terminal portion of YpkA from Yersinia. It is an all-helical molecule consisting of two distinct subdomains connected by a linker. the N-terminal end, residues 434-615, consists of six helices organized into two three-helix bundles packed against each other. This region is involved with binding to GTPases. The C-terminal end, residues 705-732. is a novel and elongated fold consisting of four helices clustered into two pairs, and this fold carries the helix implicated in actin activation. Rac1-binding domain mimics host guanidine nucleotide dissociation inhibitors (GDIs) of the Rho GTPases, thereby inhibiting nucleotide exchange in Rac1 and causing cytoskeletal disruption in the host. It is usually found downstream of pfam00069. Length = 297 Score = 28.1 bits (62), Expect = 8.7 Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 7/135 (5%) Query: 90 SMRQIQNKI--TLSFAD----SRFKENIADKVTLFLQGVNSKLNVDPKK-NLLVTTTEKE 142 S+++IQ + T S +D R +++ + + + V + + L E + Sbjct: 107 SLQRIQKHLDQTHSLSDIGSLERAHKHLETLLEVLVTLSQQGQPVSSETYDFLNRLAEAK 166 Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202 ++ N + Q A Q +I + ++ ++QR S R +++ EQ + Sbjct: 167 GTLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFDSTRPVVKFGTEQYTAIH 226 Query: 203 RQLLGTTAKMSFHKV 217 RQ++ A ++ +V Sbjct: 227 RQMMAAHAAITLQEV 241 >gnl|CDD|147888 pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters. Length = 385 Score = 28.4 bits (64), Expect = 8.9 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 4/125 (3%) Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516 + YS I + L+A ++L + G +I + +L+ + + + I+ Sbjct: 100 AIRYSLILQLILQVLLAILLLPLLL--KILGLSILQYVLLLLFLLLLKAWNLLLKWRILY 157 Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576 + K D+ L R L + + F+ A + + ++ + + LL +D++ Sbjct: 158 LVEGKRWDL--LIRLILNLLLLYLLFLLAPLLALILFLILLVVLLLLLRKLKKKKLLDWE 215 Query: 577 GGIQL 581 I+L Sbjct: 216 KLIEL 220 >gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional. Length = 483 Score = 28.3 bits (63), Expect = 9.1 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 6/95 (6%) Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259 L + +++ + + +L +N +G G + S + + A Sbjct: 14 PALALMPSSSSSAAANPLLASNPCRGIFNGGLSKNRRAFHVQFHRA----SSVRCFASAA 69 Query: 260 NFDP-KTHKPVVDISFDEMGARRFFEVTRDNIGKP 293 D K P+V++ DEM R +++ +D + P Sbjct: 70 AADRIKVQNPIVEMDGDEM-TRVIWQMIKDKLIFP 103 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.326 0.141 0.405 Gapped Lambda K H 0.267 0.0819 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 13,715,683 Number of extensions: 954386 Number of successful extensions: 3595 Number of sequences better than 10.0: 1 Number of HSP's gapped: 3479 Number of HSP's successfully gapped: 163 Length of query: 833 Length of database: 5,994,473 Length adjustment: 101 Effective length of query: 732 Effective length of database: 3,812,065 Effective search space: 2790431580 Effective search space used: 2790431580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 61 (27.1 bits)