BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780925|ref|YP_003065338.1| bifunctional preprotein
translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str.
psy62]
(833 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
Liberibacter asiaticus str. psy62]
Length = 833
Score = 1677 bits (4344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 833/833 (100%), Positives = 833/833 (100%)
Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV
Sbjct: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ
Sbjct: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST
Sbjct: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ
Sbjct: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG
Sbjct: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS
Sbjct: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI
Sbjct: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF
Sbjct: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI
Sbjct: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES
Sbjct: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK
Sbjct: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL
Sbjct: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF
Sbjct: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI
Sbjct: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 792
Score = 26.9 bits (58), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
D+ N F+Q S ELRS L IG + + +L+ S++ E I+ T+ L V
Sbjct: 566 DEIKNSFVQHVSYELRSPLTN-IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624
Query: 123 NS------------KLNVDP-KKNLLVTTTEKEISIVLSQNNID-QVISHAIEQSMEIIR 168
N KLN N L+ ++ I+ + +NNI +VIS S R
Sbjct: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684
Query: 169 QRIDQI 174
QR+ QI
Sbjct: 685 QRLLQI 690
>gi|254780294|ref|YP_003064707.1| N-acetyl-gamma-glutamyl-phosphate reductase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 311
Score = 26.6 bits (57), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
EE+RK +++ C + G + + FDS+ I + +F G G AI
Sbjct: 251 EESRKIKTIACEMMSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAI 301
>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 26.2 bits (56), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 117 LFLQGVNSKLNVDPKKN 133
L+ + ++SK+N+DP+KN
Sbjct: 196 LYHEMIDSKVNIDPRKN 212
>gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 274
Score = 25.4 bits (54), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 19/95 (20%)
Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
G +T +D+ K + +EF TAV+ ++T + + D +V + K Y S
Sbjct: 63 GELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFS 122
Query: 755 I-------------------SFRDLIDKSINETLG 770
I SF+DL DK++ + LG
Sbjct: 123 IPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILG 157
>gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 440
Score = 24.6 bits (52), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI-----QLPGEQDP 199
+ +S+ I ++I IE++ E+I +RI + G S L S RI++ Q+ G Q+
Sbjct: 314 VQVSRAMISRIIQARIEETFELIGERIKKSGFSS-----LASKRIVLTGGASQVIGLQE- 367
Query: 200 SRLRQLLGTTAKM 212
LR+ + + +M
Sbjct: 368 -MLRETICSNVRM 379
>gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 162
Score = 24.6 bits (52), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN--SKKGFMFG--VRFLRDSDGNQYL 242
H +I +P E++ L + L + ++ L + S K F+ +RFL D + L
Sbjct: 7 HLTVIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVL 66
Query: 243 VEDKVEISGIHLNGATANFD---PKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
+ + A+FD +H+ VV++ FDE+ R + IG+ L
Sbjct: 67 SPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRSL 121
>gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate phosphatase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 266
Score = 24.6 bits (52), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
V + +TE +P+S+ + +V + +L IV V + A++ L+Y++
Sbjct: 14 VVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYVY 61
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.141 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,210
Number of Sequences: 1233
Number of extensions: 21743
Number of successful extensions: 92
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 24
length of query: 833
length of database: 328,796
effective HSP length: 82
effective length of query: 751
effective length of database: 227,690
effective search space: 170995190
effective search space used: 170995190
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 42 (20.8 bits)