BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str. psy62] (833 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str. psy62] Length = 833 Score = 1677 bits (4344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 833/833 (100%), Positives = 833/833 (100%) Query: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV Sbjct: 1 MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60 Query: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ Sbjct: 61 DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120 Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST Sbjct: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180 Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ Sbjct: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240 Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG Sbjct: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300 Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS Sbjct: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360 Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI Sbjct: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420 Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF Sbjct: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480 Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI Sbjct: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540 Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES Sbjct: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600 Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK Sbjct: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660 Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL Sbjct: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720 Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF Sbjct: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780 Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI Sbjct: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833 >gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 792 Score = 26.9 bits (58), Expect = 1.4, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 15/126 (11%) Query: 63 DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122 D+ N F+Q S ELRS L IG + + +L+ S++ E I+ T+ L V Sbjct: 566 DEIKNSFVQHVSYELRSPLTN-IIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLV 624 Query: 123 NS------------KLNVDP-KKNLLVTTTEKEISIVLSQNNID-QVISHAIEQSMEIIR 168 N KLN N L+ ++ I+ + +NNI +VIS S R Sbjct: 625 NDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDGKLGSFVADR 684 Query: 169 QRIDQI 174 QR+ QI Sbjct: 685 QRLLQI 690 >gi|254780294|ref|YP_003064707.1| N-acetyl-gamma-glutamyl-phosphate reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 26.6 bits (57), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 25/51 (49%) Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490 EE+RK +++ C + G + + FDS+ I + +F G G AI Sbjct: 251 EESRKIKTIACEMMSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAI 301 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 26.2 bits (56), Expect = 2.3, Method: Compositional matrix adjust. Identities = 8/17 (47%), Positives = 15/17 (88%) Query: 117 LFLQGVNSKLNVDPKKN 133 L+ + ++SK+N+DP+KN Sbjct: 196 LYHEMIDSKVNIDPRKN 212 >gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 274 Score = 25.4 bits (54), Expect = 4.1, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 19/95 (20%) Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754 G +T +D+ K + +EF TAV+ ++T + + D +V + K Y S Sbjct: 63 GELTGFDIDLIKEVAHRLNLKVEFFETAVSGLITGLDTNRYDVLVNVAITPERQKKYDFS 122 Query: 755 I-------------------SFRDLIDKSINETLG 770 I SF+DL DK++ + LG Sbjct: 123 IPYIAHRVLLVVRSDQQDIRSFKDLTDKTVAQILG 157 >gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 24.6 bits (52), Expect = 6.7, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 12/73 (16%) Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI-----QLPGEQDP 199 + +S+ I ++I IE++ E+I +RI + G S L S RI++ Q+ G Q+ Sbjct: 314 VQVSRAMISRIIQARIEETFELIGERIKKSGFSS-----LASKRIVLTGGASQVIGLQE- 367 Query: 200 SRLRQLLGTTAKM 212 LR+ + + +M Sbjct: 368 -MLRETICSNVRM 379 >gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter asiaticus str. psy62] Length = 162 Score = 24.6 bits (52), Expect = 6.9, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN--SKKGFMFG--VRFLRDSDGNQYL 242 H +I +P E++ L + L + ++ L + S K F+ +RFL D + L Sbjct: 7 HLTVIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVL 66 Query: 243 VEDKVEISGIHLNGATANFD---PKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294 + + A+FD +H+ VV++ FDE+ R + IG+ L Sbjct: 67 SPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRSL 121 >gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate phosphatase [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 24.6 bits (52), Expect = 7.2, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 28/48 (58%) Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685 V + +TE +P+S+ + +V + +L IV V + A++ L+Y++ Sbjct: 14 VVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYVY 61 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.141 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 510,210 Number of Sequences: 1233 Number of extensions: 21743 Number of successful extensions: 92 Number of sequences better than 100.0: 20 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 75 Number of HSP's gapped (non-prelim): 24 length of query: 833 length of database: 328,796 effective HSP length: 82 effective length of query: 751 effective length of database: 227,690 effective search space: 170995190 effective search space used: 170995190 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 42 (20.8 bits)