Query gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 49
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 22:51:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780926.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db2_A KIAA0890 protein; DSRM 26.8 22 0.00091 16.7 1.5 25 13-38 66-90 (119)
2 2wuu_A N-myristoyltransferase; 11.1 56 0.0024 14.6 0.6 29 11-44 166-194 (421)
3 1o9g_A RRNA methyltransferase; 10.8 85 0.0036 13.6 1.4 44 3-46 6-52 (250)
4 3iu1_A Glycylpeptide N-tetrade 10.6 59 0.0025 14.4 0.6 26 12-42 133-158 (383)
5 3jyv_T S19E protein; eukaryoti 10.1 97 0.0041 13.3 1.5 15 26-40 51-65 (141)
6 1iic_A Peptide N-myristoyltran 10.1 45 0.0019 15.1 -0.2 29 11-44 135-163 (422)
7 1vd7_A FMBP-1, fibroin-modulat 10.0 73 0.0031 14.0 0.9 13 22-34 2-14 (26)
8 2v7f_A RPS19, RPS19E SSU ribos 8.4 1.2E+02 0.005 12.9 1.5 15 26-40 51-65 (150)
9 1iyk_A Myristoyl-COA:protein N 7.5 67 0.0028 14.2 -0.2 29 11-44 115-143 (392)
10 2hmq_A Hemerythrin; oxygen tra 6.5 1.5E+02 0.0062 12.4 1.8 26 10-35 11-36 (113)
No 1
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.76 E-value=22 Score=16.74 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=15.0
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 22334320767787689999999886
Q gi|254780926|r 13 FACGRKKIDAQEERKIRLASMLRKNL 38 (49)
Q Consensus 13 facgrkkidaqeerkirlasmlrknl 38 (49)
-+||||||||.. .---+|...-|+|
T Consensus 66 ea~G~kKieAE~-~AAAlAC~~lK~l 90 (119)
T 2db2_A 66 EGYGSKKIDAER-QAAAAACQLFKGW 90 (119)
T ss_dssp EEEESSHHHHHH-HHHHHHHHHHHHH
T ss_pred EEECCHHHHHHH-HHHHHHHHHHHHC
T ss_conf 861522467776-3558999998763
No 2
>2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A {Leishmania donovani} PDB: 3h5z_A* 2wsa_A*
Probab=11.05 E-value=56 Score=14.57 Aligned_cols=29 Identities=38% Similarity=0.634 Sum_probs=22.9
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2122334320767787689999999886864324
Q gi|254780926|r 11 DDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQ 44 (49)
Q Consensus 11 ddfacgrkkidaqeerkirlasmlrknlhrrkgq 44 (49)
-||-|-.||. |+-|||..|-+.+.||-..
T Consensus 166 INFLCVHKkl-----R~KrlAPvLIkEitRRvn~ 194 (421)
T 2wuu_A 166 INFLCVHKQL-----REKRLAPILIKEVTRRVNR 194 (421)
T ss_dssp EEEEEECGGG-----TTSSHHHHHHHHHHHHHHH
T ss_pred EEEEEECHHH-----HHCCCCHHHHHHHHHHHHH
T ss_conf 8788873767-----6468718999999988642
No 3
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=10.80 E-value=85 Score=13.64 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=32.1
Q ss_pred CCCCCCCCCCHHHHHHHCCHHHHH--HHHHHHHH-HHHHHHHHHHHH
Q ss_conf 778776652122334320767787--68999999-988686432454
Q gi|254780926|r 3 IGSNQDDNDDFACGRKKIDAQEER--KIRLASML-RKNLHRRKGQAR 46 (49)
Q Consensus 3 igsnqddnddfacgrkkidaqeer--kirlasml-rknlhrrkgqar 46 (49)
-.+.|++..|||||+---.|+-.- -.||||-+ ..-++.+-|++.
T Consensus 6 ~~t~r~~yeDlAsG~VL~sApGfP~FPVRLAsEifqRal~~~~~~~p 52 (250)
T 1o9g_A 6 HAVERMDSSDLACGVVLHSAPGYPAFPVRLATEIFQRALARLPGDGP 52 (250)
T ss_dssp SSCSCCCCGGGCTTTSSCCBTTBCCCCHHHHHHHHHHHHHTSSCCSC
T ss_pred HHHHCCCHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 33531665663575477438999885189999999999986368887
No 4
>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase, NMT1, acyltransferase, alternative splicing, cytoplasm, phosphoprotein; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A* 3iwe_A* 3jtk_A*
Probab=10.61 E-value=59 Score=14.44 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=21.0
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1223343207677876899999998868643
Q gi|254780926|r 12 DFACGRKKIDAQEERKIRLASMLRKNLHRRK 42 (49)
Q Consensus 12 dfacgrkkidaqeerkirlasmlrknlhrrk 42 (49)
||-|-.|+. |+-|+|..|-+.+-||-
T Consensus 133 nFLCVhkk~-----R~K~lAPvLIkEitRR~ 158 (383)
T 3iu1_A 133 NFLCVHKKL-----RSKRVAPVLIREITRRV 158 (383)
T ss_dssp EEEEECGGG-----TTSSHHHHHHHHHHHHH
T ss_pred EEEEECHHH-----HHCCCHHHHHHHHHHHH
T ss_conf 578866767-----31575799999999998
No 5
>3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=10.09 E-value=97 Score=13.33 Aligned_cols=15 Identities=33% Similarity=0.157 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 768999999988686
Q gi|254780926|r 26 RKIRLASMLRKNLHR 40 (49)
Q Consensus 26 rkirlasmlrknlhr 40 (49)
--+|.||+||+-..+
T Consensus 51 ~Y~RaASilRkiY~~ 65 (141)
T 3jyv_T 51 FYKRAASVARHIYMR 65 (141)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 899989999999862
No 6
>1iic_A Peptide N-myristoyltransferase; HET: MYA; 2.20A {Saccharomyces cerevisiae} SCOP: d.108.1.2 d.108.1.2 PDB: 1iid_A* 2nmt_A* 2p6e_A* 2p6f_A* 2p6g_A*
Probab=10.07 E-value=45 Score=15.07 Aligned_cols=29 Identities=34% Similarity=0.602 Sum_probs=21.7
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2122334320767787689999999886864324
Q gi|254780926|r 11 DDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQ 44 (49)
Q Consensus 11 ddfacgrkkidaqeerkirlasmlrknlhrrkgq 44 (49)
-+|-|-.||. |+-|||..|-+.+.||-..
T Consensus 135 InFLCVHKkl-----R~KrlAPvLIkEitRRvn~ 163 (422)
T 1iic_A 135 INFLCVHKQL-----RSKRLTPVLIKEITRRVNK 163 (422)
T ss_dssp EEEEEECGGG-----TTSSCHHHHHHHHHHHHHT
T ss_pred EEEEEECHHH-----HHCCCHHHHHHHHHHHHHC
T ss_conf 7678744767-----6467648999999987640
No 7
>1vd7_A FMBP-1, fibroin-modulator-binding-protein-1; tandem repeat, N-CAP, DNA binding, transcription; NMR {Synthetic} PDB: 1vdb_A 1vd9_A 1wnk_A
Probab=10.04 E-value=73 Score=13.97 Aligned_cols=13 Identities=54% Similarity=0.639 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6778768999999
Q gi|254780926|r 22 AQEERKIRLASML 34 (49)
Q Consensus 22 aqeerkirlasml 34 (49)
..|||..|||.|-
T Consensus 2 tseeraarlakms 14 (26)
T 1vd7_A 2 TSEERAARLAKMS 14 (26)
T ss_dssp CHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHH
T ss_conf 4489999999988
No 8
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=8.36 E-value=1.2e+02 Score=12.85 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 768999999988686
Q gi|254780926|r 26 RKIRLASMLRKNLHR 40 (49)
Q Consensus 26 rkirlasmlrknlhr 40 (49)
--+|.||++|+-..+
T Consensus 51 ~Y~R~ASilRkiY~~ 65 (150)
T 2v7f_A 51 WYYRVASILRRVYLD 65 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 899999999999853
No 9
>1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM; 2.30A {Candida albicans} SCOP: d.108.1.2 d.108.1.2 PDB: 1iyl_A* 1nmt_A
Probab=7.49 E-value=67 Score=14.17 Aligned_cols=29 Identities=41% Similarity=0.636 Sum_probs=22.8
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2122334320767787689999999886864324
Q gi|254780926|r 11 DDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQ 44 (49)
Q Consensus 11 ddfacgrkkidaqeerkirlasmlrknlhrrkgq 44 (49)
-+|-|-.||+ |.-|||.+|-|.+.||-..
T Consensus 115 INFLCVHKkl-----RsKrLAPvLIkEitRRvn~ 143 (392)
T 1iyk_A 115 INFLCIHKKL-----RNKRLAPVLIKEITRRVNK 143 (392)
T ss_dssp EEEEEECGGG-----TTSSCHHHHHHHHHHHHHT
T ss_pred EEEEEECHHH-----HHCCCCHHHHHHHHHHHHH
T ss_conf 8777762656-----5157617889999987531
No 10
>2hmq_A Hemerythrin; oxygen transport; 1.66A {Themiste dyscritum} SCOP: a.24.4.1 PDB: 2hmz_A 1hmd_A 1hmo_A 1i4y_A 1i4z_A 1hrb_A
Probab=6.53 E-value=1.5e+02 Score=12.37 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=21.1
Q ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 52122334320767787689999999
Q gi|254780926|r 10 NDDFACGRKKIDAQEERKIRLASMLR 35 (49)
Q Consensus 10 nddfacgrkkidaqeerkirlasmlr 35 (49)
+++|.+|-..||.|-..-+.+..-|.
T Consensus 11 ~~~~~~G~~~ID~qHr~L~~~in~l~ 36 (113)
T 2hmq_A 11 DISFRTFYTIIDDEHKTLFNGILLLS 36 (113)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88864698999999999999999998
Done!