Query gi|254780926|ref|YP_003065339.1| hypothetical protein CLIBASIA_04125 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 49
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:36:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780926.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iica1 d.108.1.2 (A:34-218) N 20.9 8.9 0.00065 17.5 -0.2 29 11-44 135-163 (185)
2 d2mhra_ a.24.4.1 (A:) Myohemer 20.3 22 0.0016 15.4 1.8 27 9-35 10-36 (118)
3 d1rxta1 d.108.1.2 (A:78-218) N 16.9 9.4 0.00069 17.4 -0.8 28 11-43 91-118 (141)
4 d1iyka1 d.108.1.2 (A:60-224) N 16.0 14 0.00099 16.6 -0.2 28 11-43 115-142 (165)
5 d1fuia1 b.43.2.1 (A:356-591) L 15.3 23 0.0017 15.4 0.8 12 25-36 183-194 (236)
6 d2hmza_ a.24.4.1 (A:) Hemeryth 15.0 36 0.0026 14.3 1.8 28 9-36 10-37 (113)
7 d1r31a1 d.58.20.1 (A:111-220) 10.4 35 0.0026 14.4 0.6 38 9-46 10-47 (110)
8 d2v7fa1 a.4.5.84 (A:2-150) Rib 10.1 56 0.004 13.3 1.5 15 26-40 50-64 (149)
9 d1ht6a1 b.71.1.1 (A:348-404) P 3.7 1E+02 0.0074 12.0 -0.0 10 1-10 27-36 (57)
10 d2p3ua1 g.3.11.1 (A:87-137) Fa 3.4 1E+02 0.0074 12.0 -0.3 12 9-20 40-51 (51)
No 1
>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.91 E-value=8.9 Score=17.51 Aligned_cols=29 Identities=34% Similarity=0.602 Sum_probs=23.2
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2122334320767787689999999886864324
Q gi|254780926|r 11 DDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQ 44 (49)
Q Consensus 11 ddfacgrkkidaqeerkirlasmlrknlhrrkgq 44 (49)
-||-|-.||. |+-|||..|-+.+-||...
T Consensus 135 VnFLCVhkk~-----R~K~lAPvLI~EitRr~n~ 163 (185)
T d1iica1 135 INFLCVHKQL-----RSKRLTPVLIKEITRRVNK 163 (185)
T ss_dssp EEEEEECGGG-----TTSSCHHHHHHHHHHHHHT
T ss_pred EEEEEECHHH-----HHCCCCHHHHHHHHHHHCC
T ss_conf 9898894657-----5258758999999987400
No 2
>d2mhra_ a.24.4.1 (A:) Myohemerythin {Sipunculan worm (Themiste zostericola) [TaxId: 6437]}
Probab=20.33 E-value=22 Score=15.41 Aligned_cols=27 Identities=7% Similarity=0.033 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 652122334320767787689999999
Q gi|254780926|r 9 DNDDFACGRKKIDAQEERKIRLASMLR 35 (49)
Q Consensus 9 dnddfacgrkkidaqeerkirlasmlr 35 (49)
=+++|.+|-..||.|-.+-+.+..-+.
T Consensus 10 W~~~~~vG~~~ID~qH~~l~~~in~l~ 36 (118)
T d2mhra_ 10 WDESFRVFYEQLDEEHKKIFKGIFDCI 36 (118)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 888873599999999999999999999
No 3
>d1rxta1 d.108.1.2 (A:78-218) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.86 E-value=9.4 Score=17.37 Aligned_cols=28 Identities=36% Similarity=0.593 Sum_probs=23.0
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 212233432076778768999999988686432
Q gi|254780926|r 11 DDFACGRKKIDAQEERKIRLASMLRKNLHRRKG 43 (49)
Q Consensus 11 ddfacgrkkidaqeerkirlasmlrknlhrrkg 43 (49)
-+|-|-.||. |+-|||.+|-+.+.||--
T Consensus 91 InFLCVhKkl-----R~k~lAPvLI~EitRr~n 118 (141)
T d1rxta1 91 INFLCVHKKL-----RSKRVAPVLIREITRRVH 118 (141)
T ss_dssp CCCCEECSSC-----CCSSSHHHHHHHHHHHHT
T ss_pred EEEEEECHHH-----HHCCCCHHHHHHHHHHHH
T ss_conf 9999893547-----535874899999998750
No 4
>d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=15.96 E-value=14 Score=16.55 Aligned_cols=28 Identities=43% Similarity=0.641 Sum_probs=22.8
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 212233432076778768999999988686432
Q gi|254780926|r 11 DDFACGRKKIDAQEERKIRLASMLRKNLHRRKG 43 (49)
Q Consensus 11 ddfacgrkkidaqeerkirlasmlrknlhrrkg 43 (49)
-+|-|-.||. |+-|||.+|-+.+.||--
T Consensus 115 INFLCVhKkl-----R~KrlAPvLI~EitRr~n 142 (165)
T d1iyka1 115 INFLCIHKKL-----RNKRLAPVLIKEITRRVN 142 (165)
T ss_dssp EEEEEECGGG-----TTSSCHHHHHHHHHHHHH
T ss_pred EEEEEECHHH-----HHCCCCHHHHHHHHHHHH
T ss_conf 9898883557-----525873899999998741
No 5
>d1fuia1 b.43.2.1 (A:356-591) L-fucose isomerase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.34 E-value=23 Score=15.37 Aligned_cols=12 Identities=58% Similarity=0.548 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH
Q ss_conf 876899999998
Q gi|254780926|r 25 ERKIRLASMLRK 36 (49)
Q Consensus 25 erkirlasmlrk 36 (49)
..-|.||||||-
T Consensus 183 adlitLasmLRI 194 (236)
T d1fuia1 183 ADFITLASMLRI 194 (236)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHCC
T ss_conf 899999998789
No 6
>d2hmza_ a.24.4.1 (A:) Hemerythrin {Sipunculid worm (Themiste dyscritum) [TaxId: 6436]}
Probab=14.96 E-value=36 Score=14.34 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 6521223343207677876899999998
Q gi|254780926|r 9 DNDDFACGRKKIDAQEERKIRLASMLRK 36 (49)
Q Consensus 9 dnddfacgrkkidaqeerkirlasmlrk 36 (49)
=+++|.+|-..||.|-..-+.+..-|..
T Consensus 10 W~~~~~~Gi~~ID~qH~~l~~~in~l~~ 37 (113)
T d2hmza_ 10 WDISFRTFYTIVDDEHKTLFNGILLLSQ 37 (113)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8888735999999999999999999988
No 7
>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
Probab=10.40 E-value=35 Score=14.39 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65212233432076778768999999988686432454
Q gi|254780926|r 9 DNDDFACGRKKIDAQEERKIRLASMLRKNLHRRKGQAR 46 (49)
Q Consensus 9 dnddfacgrkkidaqeerkirlasmlrknlhrrkgqar 46 (49)
+.+|+.--+.+|..+.+.-+..|.-.-+|+.+|-|-++
T Consensus 10 ~v~d~~~a~~~i~~~k~~l~~~an~~~p~m~kRGGG~~ 47 (110)
T d1r31a1 10 GIQDPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCR 47 (110)
T ss_dssp SCSCHHHHHHHHHHTHHHHHHHHHTTCHHHHHTTCEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEE
T ss_conf 27999999999999799999998752877886499826
No 8
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=10.13 E-value=56 Score=13.34 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 768999999988686
Q gi|254780926|r 26 RKIRLASMLRKNLHR 40 (49)
Q Consensus 26 rkirlasmlrknlhr 40 (49)
--+|.||+|||-..+
T Consensus 50 ~y~RaASilRkiY~~ 64 (149)
T d2v7fa1 50 WYYRVASILRRVYLD 64 (149)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 799999999999870
No 9
>d1ht6a1 b.71.1.1 (A:348-404) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]}
Probab=3.71 E-value=1e+02 Score=11.97 Aligned_cols=10 Identities=50% Similarity=0.614 Sum_probs=6.3
Q ss_pred CCCCCCCCCC
Q ss_conf 9577877665
Q gi|254780926|r 1 MKIGSNQDDN 10 (49)
Q Consensus 1 mkigsnqddn 10 (49)
||||+..|--
T Consensus 27 mKIGp~~d~~ 36 (57)
T d1ht6a1 27 VKIGSRYDVG 36 (57)
T ss_dssp EEESSCSCCG
T ss_pred EEEECCCCCC
T ss_conf 9880764378
No 10
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.40 E-value=1e+02 Score=11.97 Aligned_cols=12 Identities=17% Similarity=0.827 Sum_probs=7.4
Q ss_pred CCCCHHHHHHHC
Q ss_conf 652122334320
Q gi|254780926|r 9 DNDDFACGRKKI 20 (49)
Q Consensus 9 dnddfacgrkki 20 (49)
..+.|.|||-.|
T Consensus 40 ~~~~~pCGr~~~ 51 (51)
T d2p3ua1 40 PTGPYPCGKQTL 51 (51)
T ss_dssp ESSSSCTTCCCC
T ss_pred CCCCCCCCCEEC
T ss_conf 088668878849
Done!